Query 001637
Match_columns 1039
No_of_seqs 826 out of 5366
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 05:42:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.1E-87 6.6E-92 809.4 80.6 712 67-1008 50-774 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4E-83 8.6E-88 773.5 74.9 677 202-1007 48-726 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.5E-69 5.4E-74 634.2 68.8 549 99-716 366-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 3.7E-68 8.1E-73 624.2 69.1 546 167-751 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 5.6E-63 1.2E-67 583.1 57.0 470 69-573 88-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.5E-60 3.3E-65 562.4 53.9 515 398-1010 84-613 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-51 1.4E-55 510.4 112.4 868 73-1035 27-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-47 2.7E-52 480.8 107.8 835 69-952 57-898 (899)
9 PRK11447 cellulose synthase su 100.0 2.2E-27 4.8E-32 294.4 75.8 650 335-1035 32-739 (1157)
10 PRK11447 cellulose synthase su 100.0 8.2E-27 1.8E-31 289.4 77.8 666 141-918 31-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.6E-24 5.7E-29 252.8 76.6 632 218-960 57-710 (987)
12 PRK09782 bacteriophage N4 rece 100.0 5.4E-24 1.2E-28 250.2 75.8 678 173-961 45-745 (987)
13 KOG2002 TPR-containing nuclear 100.0 1.9E-22 4.1E-27 219.2 67.7 605 382-1002 146-799 (1018)
14 KOG4626 O-linked N-acetylgluco 100.0 5.7E-25 1.2E-29 225.5 40.6 349 613-979 152-509 (966)
15 KOG2002 TPR-containing nuclear 99.9 1.1E-20 2.5E-25 205.5 68.0 581 249-883 137-744 (1018)
16 KOG4626 O-linked N-acetylgluco 99.9 7.8E-24 1.7E-28 217.3 38.2 448 440-943 52-508 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-18 3.7E-23 202.0 50.8 257 763-1035 307-570 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 6.4E-18 1.4E-22 197.2 53.2 256 694-959 308-574 (615)
19 PRK11788 tetratricopeptide rep 99.9 5.6E-19 1.2E-23 196.2 35.5 304 618-961 42-354 (389)
20 PRK11788 tetratricopeptide rep 99.9 9.3E-19 2E-23 194.4 36.1 292 215-534 45-346 (389)
21 PRK15174 Vi polysaccharide exp 99.9 5.3E-17 1.2E-21 188.1 50.9 323 584-918 50-380 (656)
22 KOG2076 RNA polymerase III tra 99.9 1.4E-14 3E-19 157.9 64.8 668 329-1033 137-892 (895)
23 KOG2076 RNA polymerase III tra 99.8 2.6E-14 5.6E-19 155.7 64.5 284 446-743 387-694 (895)
24 KOG0495 HAT repeat protein [RN 99.8 2.7E-14 5.7E-19 149.0 61.1 599 218-848 264-879 (913)
25 KOG0495 HAT repeat protein [RN 99.8 6.3E-14 1.4E-18 146.3 63.4 593 344-975 264-866 (913)
26 PRK15174 Vi polysaccharide exp 99.8 8.4E-17 1.8E-21 186.5 45.9 330 174-535 46-381 (656)
27 PRK10049 pgaA outer membrane p 99.8 1.6E-16 3.4E-21 188.7 48.5 423 505-970 14-470 (765)
28 KOG4318 Bicoid mRNA stability 99.8 7.2E-14 1.6E-18 151.1 60.4 756 91-939 13-828 (1088)
29 KOG2003 TPR repeat-containing 99.8 2.2E-16 4.7E-21 156.8 37.7 491 437-975 202-709 (840)
30 PRK10049 pgaA outer membrane p 99.8 9.9E-16 2.1E-20 181.9 51.2 404 582-1017 21-470 (765)
31 KOG4318 Bicoid mRNA stability 99.8 4E-15 8.8E-20 160.6 48.1 603 125-824 12-634 (1088)
32 PRK14574 hmsH outer membrane p 99.8 4.7E-15 1E-19 171.5 52.5 449 513-1013 41-523 (822)
33 KOG2003 TPR repeat-containing 99.8 1.6E-15 3.4E-20 150.8 38.3 490 507-1034 202-720 (840)
34 PRK14574 hmsH outer membrane p 99.8 7E-14 1.5E-18 161.9 54.8 439 445-918 43-512 (822)
35 KOG1915 Cell cycle control pro 99.7 1.5E-12 3.3E-17 131.0 48.5 447 70-549 75-548 (677)
36 KOG1915 Cell cycle control pro 99.7 6.4E-12 1.4E-16 126.6 50.0 437 217-722 85-547 (677)
37 KOG4422 Uncharacterized conser 99.7 3.3E-12 7.2E-17 126.9 45.0 444 78-570 125-590 (625)
38 KOG4422 Uncharacterized conser 99.7 2.3E-12 5E-17 128.0 43.4 427 331-779 116-590 (625)
39 KOG0985 Vesicle coat protein c 99.7 2.2E-09 4.8E-14 118.0 68.2 782 70-972 362-1261(1666)
40 KOG0547 Translocase of outer m 99.6 3E-12 6.6E-17 129.7 35.2 221 792-1033 333-563 (606)
41 KOG2047 mRNA splicing factor [ 99.6 4.7E-09 1E-13 110.5 59.1 601 236-905 77-709 (835)
42 KOG2047 mRNA splicing factor [ 99.6 7.1E-09 1.5E-13 109.2 59.4 654 101-835 25-709 (835)
43 KOG1173 Anaphase-promoting com 99.6 1.9E-11 4.1E-16 126.7 39.4 285 678-972 242-534 (611)
44 KOG0547 Translocase of outer m 99.6 5.2E-12 1.1E-16 128.0 34.0 215 763-999 339-564 (606)
45 KOG4162 Predicted calmodulin-b 99.6 2.3E-09 5E-14 115.8 55.8 129 892-1035 652-782 (799)
46 KOG0985 Vesicle coat protein c 99.6 5.8E-08 1.3E-12 107.3 72.4 732 71-880 484-1366(1666)
47 KOG1126 DNA-binding cell divis 99.6 2.7E-13 5.8E-18 143.5 24.3 280 695-1001 334-620 (638)
48 KOG1155 Anaphase-promoting com 99.6 2.1E-10 4.6E-15 115.9 43.0 364 570-953 158-535 (559)
49 TIGR00540 hemY_coli hemY prote 99.6 3.5E-12 7.6E-17 140.4 32.7 290 691-1034 95-397 (409)
50 KOG4162 Predicted calmodulin-b 99.6 4.5E-09 9.7E-14 113.6 54.4 437 469-958 321-785 (799)
51 KOG1155 Anaphase-promoting com 99.6 1.8E-10 3.9E-15 116.4 41.1 331 606-953 159-494 (559)
52 PF13429 TPR_15: Tetratricopep 99.6 1.5E-14 3.3E-19 151.1 12.6 232 784-1035 43-276 (280)
53 KOG3785 Uncharacterized conser 99.6 2.8E-10 6.1E-15 110.6 39.9 439 479-958 65-518 (557)
54 KOG1173 Anaphase-promoting com 99.6 1.5E-10 3.2E-15 120.2 40.4 505 332-900 17-532 (611)
55 KOG3616 Selective LIM binding 99.5 1.1E-07 2.3E-12 101.6 61.9 193 338-564 739-931 (1636)
56 KOG1126 DNA-binding cell divis 99.5 3.1E-12 6.7E-17 135.6 26.7 282 663-960 337-624 (638)
57 KOG1127 TPR repeat-containing 99.5 8.4E-09 1.8E-13 114.1 53.3 381 400-792 774-1187(1238)
58 KOG1127 TPR repeat-containing 99.5 9.3E-09 2E-13 113.8 53.3 665 221-936 474-1191(1238)
59 PF13429 TPR_15: Tetratricopep 99.5 4.8E-14 1E-18 147.4 12.0 260 685-953 13-276 (280)
60 PRK10747 putative protoheme IX 99.5 7E-11 1.5E-15 129.2 34.8 282 693-1000 97-389 (398)
61 KOG1156 N-terminal acetyltrans 99.5 2.7E-07 5.9E-12 98.1 57.9 230 334-569 11-247 (700)
62 TIGR00540 hemY_coli hemY prote 99.5 1.2E-10 2.6E-15 128.2 35.1 292 413-742 96-397 (409)
63 PRK10747 putative protoheme IX 99.5 1.7E-10 3.8E-15 126.2 35.9 282 414-743 97-389 (398)
64 COG2956 Predicted N-acetylgluc 99.5 2E-10 4.3E-15 110.7 30.0 292 252-568 47-345 (389)
65 KOG3617 WD40 and TPR repeat-co 99.5 8.7E-08 1.9E-12 103.7 52.5 597 113-919 738-1359(1416)
66 KOG3616 Selective LIM binding 99.5 4.8E-07 1E-11 96.8 64.5 803 79-1032 455-1350(1636)
67 KOG1156 N-terminal acetyltrans 99.4 1.3E-08 2.9E-13 107.7 43.2 238 413-656 19-263 (700)
68 COG2956 Predicted N-acetylgluc 99.4 6E-10 1.3E-14 107.4 30.4 288 625-955 49-348 (389)
69 COG3071 HemY Uncharacterized e 99.4 1.7E-09 3.7E-14 108.1 33.9 283 414-706 97-387 (400)
70 KOG1174 Anaphase-promoting com 99.4 1.2E-08 2.6E-13 101.7 38.5 272 677-960 229-504 (564)
71 KOG3785 Uncharacterized conser 99.4 3.1E-08 6.6E-13 96.7 40.2 377 338-742 29-420 (557)
72 COG3071 HemY Uncharacterized e 99.4 4.9E-09 1.1E-13 104.9 32.8 62 891-954 329-390 (400)
73 KOG1174 Anaphase-promoting com 99.3 1.1E-07 2.3E-12 95.1 41.0 395 330-743 96-499 (564)
74 KOG1840 Kinesin light chain [C 99.3 6.1E-10 1.3E-14 120.3 27.1 242 786-1034 200-477 (508)
75 KOG3617 WD40 and TPR repeat-co 99.3 1.8E-06 3.8E-11 93.9 50.6 50 905-954 1306-1359(1416)
76 PRK12370 invasion protein regu 99.3 8.7E-10 1.9E-14 126.3 27.9 147 801-953 320-469 (553)
77 PRK12370 invasion protein regu 99.3 1.5E-09 3.2E-14 124.5 28.7 199 764-970 318-519 (553)
78 TIGR02521 type_IV_pilW type IV 99.3 1.4E-09 3E-14 111.4 25.3 164 785-953 31-197 (234)
79 KOG0624 dsRNA-activated protei 99.3 9.4E-08 2E-12 93.1 34.7 316 613-960 40-374 (504)
80 PF13041 PPR_2: PPR repeat fam 99.2 1.7E-11 3.7E-16 88.0 6.3 50 238-287 1-50 (50)
81 TIGR02521 type_IV_pilW type IV 99.2 4.1E-09 8.8E-14 107.9 26.5 200 715-953 31-231 (234)
82 KOG2376 Signal recognition par 99.2 1.9E-06 4.1E-11 90.9 42.3 123 824-950 380-516 (652)
83 PF13041 PPR_2: PPR repeat fam 99.2 5.7E-11 1.2E-15 85.3 6.5 50 329-378 1-50 (50)
84 KOG2376 Signal recognition par 99.2 2.7E-06 5.7E-11 89.8 43.0 167 799-974 321-506 (652)
85 KOG1129 TPR repeat-containing 99.2 6.4E-09 1.4E-13 100.3 21.8 238 575-854 222-461 (478)
86 KOG1840 Kinesin light chain [C 99.2 1.4E-08 3E-13 109.9 27.1 97 786-882 368-477 (508)
87 PF12569 NARP1: NMDA receptor- 99.2 1.6E-06 3.4E-11 95.6 42.9 89 375-465 13-106 (517)
88 KOG0548 Molecular co-chaperone 99.2 1.1E-07 2.4E-12 99.1 31.6 235 753-1018 227-471 (539)
89 KOG1129 TPR repeat-containing 99.1 3.7E-09 8.1E-14 101.9 18.8 228 279-534 227-457 (478)
90 PRK11189 lipoprotein NlpI; Pro 99.1 1.9E-08 4.1E-13 105.1 25.7 151 728-882 39-192 (296)
91 PRK11189 lipoprotein NlpI; Pro 99.1 7.9E-09 1.7E-13 108.0 22.6 238 763-1022 39-286 (296)
92 PF12569 NARP1: NMDA receptor- 99.1 3.8E-06 8.2E-11 92.7 43.7 292 338-639 11-333 (517)
93 COG3063 PilF Tfp pilus assembl 99.1 7E-08 1.5E-12 89.4 24.1 207 787-1013 37-246 (250)
94 COG3063 PilF Tfp pilus assembl 99.0 8.3E-08 1.8E-12 88.9 21.9 194 822-1033 37-233 (250)
95 KOG0548 Molecular co-chaperone 99.0 5.6E-07 1.2E-11 94.0 29.9 90 792-884 365-455 (539)
96 cd05804 StaR_like StaR_like; a 98.9 2.1E-06 4.6E-11 93.9 33.1 95 822-918 116-214 (355)
97 PRK04841 transcriptional regul 98.9 0.00024 5.2E-09 88.8 52.3 439 155-640 265-760 (903)
98 KOG1125 TPR repeat-containing 98.9 2.2E-07 4.7E-12 97.8 20.7 258 620-911 294-563 (579)
99 PLN02789 farnesyltranstransfer 98.9 1.3E-06 2.7E-11 90.9 25.8 231 787-1034 39-300 (320)
100 cd05804 StaR_like StaR_like; a 98.9 1E-05 2.2E-10 88.7 34.6 200 368-568 116-334 (355)
101 KOG0624 dsRNA-activated protei 98.8 3.5E-05 7.6E-10 75.7 32.8 326 365-744 37-370 (504)
102 KOG2053 Mitochondrial inherita 98.8 0.00051 1.1E-08 76.9 47.5 223 286-536 20-256 (932)
103 KOG1125 TPR repeat-containing 98.8 4.5E-07 9.7E-12 95.5 21.3 228 784-1030 318-565 (579)
104 KOG1914 mRNA cleavage and poly 98.8 0.00036 7.8E-09 73.4 40.8 297 341-640 147-501 (656)
105 KOG4340 Uncharacterized conser 98.8 1.1E-05 2.5E-10 77.3 27.5 313 71-427 13-336 (459)
106 KOG4340 Uncharacterized conser 98.8 8.8E-06 1.9E-10 78.1 26.7 314 334-705 13-335 (459)
107 PF04733 Coatomer_E: Coatomer 98.8 4.7E-07 1E-11 92.8 19.7 252 690-960 11-269 (290)
108 KOG1128 Uncharacterized conser 98.7 9.1E-07 2E-11 95.7 19.1 214 787-1035 400-615 (777)
109 PRK04841 transcriptional regul 98.7 6.4E-05 1.4E-09 93.8 38.0 238 334-571 494-761 (903)
110 KOG1914 mRNA cleavage and poly 98.7 0.00095 2.1E-08 70.4 44.2 444 468-942 17-527 (656)
111 KOG2053 Mitochondrial inherita 98.7 0.0017 3.7E-08 72.9 47.8 220 415-641 23-256 (932)
112 KOG1070 rRNA processing protei 98.7 1.1E-05 2.3E-10 93.6 26.7 188 333-524 1499-1689(1710)
113 PLN02789 farnesyltranstransfer 98.6 9.4E-06 2E-10 84.5 24.2 228 762-999 49-300 (320)
114 COG5010 TadD Flp pilus assembl 98.6 4E-06 8.7E-11 80.0 19.3 155 859-1031 70-226 (257)
115 TIGR03302 OM_YfiO outer membra 98.6 2.9E-06 6.2E-11 86.4 20.0 164 785-953 33-231 (235)
116 PRK15359 type III secretion sy 98.6 1.9E-06 4.2E-11 78.7 16.2 114 841-963 14-128 (144)
117 PF12854 PPR_1: PPR repeat 98.6 4.7E-08 1E-12 62.5 3.8 32 235-266 2-33 (34)
118 PF12854 PPR_1: PPR repeat 98.5 9E-08 1.9E-12 61.2 3.8 32 361-392 2-33 (34)
119 PRK10370 formate-dependent nit 98.5 1E-05 2.2E-10 78.3 19.9 151 792-960 23-178 (198)
120 PF04733 Coatomer_E: Coatomer 98.5 3.8E-06 8.3E-11 86.2 17.4 149 215-394 112-264 (290)
121 TIGR03302 OM_YfiO outer membra 98.5 6.1E-06 1.3E-10 83.9 18.3 184 819-1036 32-232 (235)
122 PRK15359 type III secretion sy 98.5 5.8E-06 1.3E-10 75.5 16.2 96 823-923 27-123 (144)
123 KOG1070 rRNA processing protei 98.5 7.8E-05 1.7E-09 86.8 28.1 247 713-999 1455-1705(1710)
124 KOG1128 Uncharacterized conser 98.5 3.8E-05 8.2E-10 83.6 24.2 220 677-918 395-615 (777)
125 KOG3060 Uncharacterized conser 98.5 0.0001 2.2E-09 69.8 23.2 170 782-958 48-222 (289)
126 COG4783 Putative Zn-dependent 98.4 7.5E-05 1.6E-09 77.9 22.5 154 786-962 307-461 (484)
127 PRK15179 Vi polysaccharide bio 98.4 9.7E-05 2.1E-09 85.2 25.9 130 784-918 85-216 (694)
128 PRK14720 transcript cleavage f 98.4 5.8E-05 1.3E-09 87.5 23.4 222 709-971 24-268 (906)
129 PRK14720 transcript cleavage f 98.4 9.8E-05 2.1E-09 85.7 25.2 230 680-936 31-268 (906)
130 COG5010 TadD Flp pilus assembl 98.4 7.9E-05 1.7E-09 71.4 20.2 130 783-916 98-228 (257)
131 PRK10370 formate-dependent nit 98.3 7.8E-05 1.7E-09 72.2 19.9 119 414-535 52-173 (198)
132 PRK15179 Vi polysaccharide bio 98.3 0.00022 4.7E-09 82.4 26.8 146 816-967 82-229 (694)
133 TIGR02552 LcrH_SycD type III s 98.3 2E-05 4.4E-10 71.9 14.7 116 841-963 4-121 (135)
134 COG4783 Putative Zn-dependent 98.2 0.0018 4E-08 67.9 27.7 200 382-605 253-454 (484)
135 KOG3081 Vesicle coat complex C 98.2 0.00088 1.9E-08 64.2 22.4 232 691-939 19-255 (299)
136 KOG3060 Uncharacterized conser 98.1 0.0014 3.1E-08 62.3 22.7 184 694-883 26-219 (289)
137 KOG3081 Vesicle coat complex C 98.1 0.0013 2.7E-08 63.2 21.5 69 486-556 188-256 (299)
138 KOG0553 TPR repeat-containing 98.0 0.00023 4.9E-09 69.7 15.6 126 829-960 90-221 (304)
139 TIGR00756 PPR pentatricopeptid 98.0 7.6E-06 1.6E-10 53.6 4.0 35 241-275 1-35 (35)
140 TIGR02552 LcrH_SycD type III s 98.0 0.00022 4.7E-09 65.0 14.7 94 787-883 19-113 (135)
141 PF09976 TPR_21: Tetratricopep 98.0 0.00026 5.6E-09 65.1 14.7 115 833-951 24-144 (145)
142 PRK15363 pathogenicity island 98.0 0.00036 7.8E-09 62.3 14.7 97 855-954 35-132 (157)
143 PF09976 TPR_21: Tetratricopep 98.0 0.00032 6.9E-09 64.5 15.1 126 787-916 14-144 (145)
144 KOG0550 Molecular chaperone (D 97.9 0.0059 1.3E-07 62.5 24.2 85 867-953 261-349 (486)
145 KOG0553 TPR repeat-containing 97.9 0.00012 2.5E-09 71.7 11.4 101 863-968 89-190 (304)
146 PRK10153 DNA-binding transcrip 97.8 0.00095 2.1E-08 74.7 18.3 142 816-963 333-489 (517)
147 TIGR00756 PPR pentatricopeptid 97.8 3.8E-05 8.3E-10 50.2 4.4 33 333-365 2-34 (35)
148 KOG0550 Molecular chaperone (D 97.8 0.032 6.8E-07 57.4 26.3 289 213-535 57-350 (486)
149 PF13812 PPR_3: Pentatricopept 97.8 3.7E-05 7.9E-10 49.8 4.0 33 241-273 2-34 (34)
150 PRK15363 pathogenicity island 97.7 0.00075 1.6E-08 60.3 12.8 97 784-883 34-131 (157)
151 PF14938 SNAP: Soluble NSF att 97.7 0.0037 8.1E-08 65.0 20.3 144 790-951 99-263 (282)
152 COG4700 Uncharacterized protei 97.7 0.0065 1.4E-07 54.8 18.3 108 851-962 85-195 (251)
153 COG4700 Uncharacterized protei 97.7 0.0049 1.1E-07 55.6 17.5 132 886-1033 85-219 (251)
154 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0011 2.4E-08 70.6 16.3 123 787-917 171-295 (395)
155 PRK02603 photosystem I assembl 97.7 0.0015 3.3E-08 62.1 15.1 115 822-960 37-153 (172)
156 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0014 3.1E-08 69.7 15.7 115 413-533 181-295 (395)
157 KOG2041 WD40 repeat protein [G 97.6 0.038 8.3E-07 60.3 25.9 204 329-566 690-903 (1189)
158 PF01535 PPR: PPR repeat; Int 97.6 5.3E-05 1.1E-09 47.8 3.1 31 241-271 1-31 (31)
159 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.001 2.2E-08 59.0 12.7 99 857-959 4-108 (119)
160 PLN03088 SGT1, suppressor of 97.6 0.001 2.2E-08 71.5 14.5 87 829-918 11-98 (356)
161 PF13812 PPR_3: Pentatricopept 97.6 0.00011 2.4E-09 47.5 4.4 32 333-364 3-34 (34)
162 cd00189 TPR Tetratricopeptide 97.6 0.00078 1.7E-08 56.8 11.2 93 858-953 3-96 (100)
163 PF14938 SNAP: Soluble NSF att 97.6 0.032 6.9E-07 58.1 24.9 60 335-394 159-224 (282)
164 PF07079 DUF1347: Protein of u 97.6 0.14 3E-06 53.7 46.5 128 830-966 389-531 (549)
165 KOG1130 Predicted G-alpha GTPa 97.6 0.0024 5.2E-08 64.8 15.3 133 822-954 197-344 (639)
166 PRK02603 photosystem I assembl 97.6 0.0035 7.6E-08 59.7 16.2 112 784-918 34-148 (172)
167 PF07079 DUF1347: Protein of u 97.6 0.15 3.2E-06 53.5 47.9 219 715-952 298-543 (549)
168 PF13414 TPR_11: TPR repeat; P 97.6 0.00023 4.9E-09 55.5 6.5 66 889-958 2-69 (69)
169 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0018 4E-08 57.3 13.0 94 823-918 5-104 (119)
170 COG3898 Uncharacterized membra 97.5 0.14 3.1E-06 52.3 33.8 298 404-750 85-398 (531)
171 PF12895 Apc3: Anaphase-promot 97.5 0.00025 5.3E-09 57.9 6.1 80 868-950 2-83 (84)
172 PF01535 PPR: PPR repeat; Int 97.5 0.00015 3.3E-09 45.6 3.5 29 333-361 2-30 (31)
173 PF13432 TPR_16: Tetratricopep 97.4 0.00041 9E-09 53.2 6.5 61 896-960 3-64 (65)
174 PLN03088 SGT1, suppressor of 97.4 0.003 6.4E-08 67.9 14.8 92 790-884 7-99 (356)
175 cd00189 TPR Tetratricopeptide 97.4 0.0022 4.7E-08 54.0 11.3 91 789-882 4-95 (100)
176 PF12688 TPR_5: Tetratrico pep 97.4 0.005 1.1E-07 53.2 13.1 91 826-918 7-103 (120)
177 PF12895 Apc3: Anaphase-promot 97.4 0.00022 4.7E-09 58.2 4.5 81 833-915 2-83 (84)
178 KOG1130 Predicted G-alpha GTPa 97.4 0.0029 6.3E-08 64.3 13.0 285 339-639 25-343 (639)
179 PF05843 Suf: Suppressor of fo 97.3 0.0045 9.7E-08 64.0 14.4 131 207-359 3-135 (280)
180 COG3898 Uncharacterized membra 97.3 0.26 5.6E-06 50.6 32.5 288 693-1006 97-397 (531)
181 CHL00033 ycf3 photosystem I as 97.3 0.0046 1E-07 58.6 13.1 94 855-950 35-138 (168)
182 COG4235 Cytochrome c biogenesi 97.3 0.011 2.4E-07 58.7 15.4 123 838-967 140-267 (287)
183 PF14559 TPR_19: Tetratricopep 97.2 0.00065 1.4E-08 52.7 5.6 62 901-966 2-64 (68)
184 CHL00033 ycf3 photosystem I as 97.2 0.0044 9.5E-08 58.8 12.3 80 785-866 35-117 (168)
185 PRK10866 outer membrane biogen 97.2 0.11 2.3E-06 52.4 22.6 62 683-744 35-98 (243)
186 PF05843 Suf: Suppressor of fo 97.2 0.0097 2.1E-07 61.5 15.0 133 822-959 3-139 (280)
187 PF08579 RPM2: Mitochondrial r 97.2 0.006 1.3E-07 50.4 10.3 80 333-412 27-115 (120)
188 KOG2041 WD40 repeat protein [G 97.2 0.58 1.3E-05 51.7 32.6 153 184-392 748-904 (1189)
189 PF10037 MRP-S27: Mitochondria 97.2 0.0039 8.5E-08 66.7 11.9 120 330-449 65-186 (429)
190 PRK10866 outer membrane biogen 97.2 0.058 1.3E-06 54.2 19.8 58 790-848 37-97 (243)
191 PF10037 MRP-S27: Mitochondria 97.1 0.0086 1.9E-07 64.2 13.3 113 818-930 64-178 (429)
192 PRK10153 DNA-binding transcrip 97.0 0.03 6.5E-07 63.0 18.2 123 801-929 358-490 (517)
193 PF12688 TPR_5: Tetratrico pep 97.0 0.019 4E-07 49.8 12.6 92 860-953 6-103 (120)
194 PF13414 TPR_11: TPR repeat; P 97.0 0.0024 5.1E-08 49.7 6.5 61 820-882 3-65 (69)
195 PF13432 TPR_16: Tetratricopep 97.0 0.0031 6.8E-08 48.3 7.0 57 791-848 3-59 (65)
196 PF13371 TPR_9: Tetratricopept 97.0 0.0035 7.6E-08 49.4 7.5 61 898-962 3-64 (73)
197 PF08579 RPM2: Mitochondrial r 97.0 0.011 2.4E-07 48.9 10.0 77 370-446 29-114 (120)
198 KOG2796 Uncharacterized conser 97.0 0.41 8.9E-06 46.3 23.1 145 824-972 181-331 (366)
199 KOG1538 Uncharacterized conser 96.9 0.073 1.6E-06 57.8 18.4 38 261-301 621-658 (1081)
200 COG4235 Cytochrome c biogenesi 96.9 0.037 8E-07 55.2 15.2 110 817-932 153-267 (287)
201 KOG2796 Uncharacterized conser 96.8 0.084 1.8E-06 50.8 16.1 232 65-303 66-314 (366)
202 PF13281 DUF4071: Domain of un 96.8 0.25 5.4E-06 52.0 21.2 79 790-870 184-274 (374)
203 KOG1538 Uncharacterized conser 96.8 0.22 4.8E-06 54.3 20.8 55 188-267 618-672 (1081)
204 PRK10803 tol-pal system protei 96.8 0.016 3.6E-07 58.5 12.0 90 865-960 153-250 (263)
205 PF06239 ECSIT: Evolutionarily 96.8 0.029 6.2E-07 52.9 12.4 116 329-463 45-166 (228)
206 PRK10803 tol-pal system protei 96.7 0.022 4.8E-07 57.6 12.7 86 831-918 154-245 (263)
207 COG5107 RNA14 Pre-mRNA 3'-end 96.7 1 2.2E-05 47.3 40.3 92 457-553 30-121 (660)
208 PF06239 ECSIT: Evolutionarily 96.6 0.042 9.1E-07 51.9 12.5 104 364-486 45-153 (228)
209 PF03704 BTAD: Bacterial trans 96.6 0.071 1.5E-06 49.1 14.4 68 892-961 64-137 (146)
210 PF13525 YfiO: Outer membrane 96.6 0.35 7.6E-06 47.3 19.5 62 682-743 7-70 (203)
211 PF14559 TPR_19: Tetratricopep 96.5 0.0077 1.7E-07 46.6 6.1 50 868-918 4-53 (68)
212 PRK15331 chaperone protein Sic 96.5 0.073 1.6E-06 48.1 12.6 100 851-953 32-133 (165)
213 PF13525 YfiO: Outer membrane 96.4 0.39 8.4E-06 47.0 18.7 54 411-464 15-70 (203)
214 PRK11906 transcriptional regul 96.4 0.26 5.6E-06 52.7 18.0 119 836-959 274-404 (458)
215 KOG0543 FKBP-type peptidyl-pro 96.4 0.093 2E-06 54.5 14.3 139 826-999 214-353 (397)
216 PF13424 TPR_12: Tetratricopep 96.2 0.015 3.2E-07 46.5 6.6 63 891-953 6-74 (78)
217 KOG1585 Protein required for f 96.2 1.2 2.6E-05 42.9 19.3 145 786-947 92-249 (308)
218 PRK11906 transcriptional regul 96.2 0.27 5.8E-06 52.6 16.8 109 801-915 320-432 (458)
219 PF13371 TPR_9: Tetratricopept 96.1 0.033 7.3E-07 43.7 8.0 54 794-848 4-57 (73)
220 COG0457 NrfG FOG: TPR repeat [ 96.1 1.8 4E-05 43.7 29.0 200 785-1001 59-265 (291)
221 COG0457 NrfG FOG: TPR repeat [ 96.1 1.9 4.2E-05 43.5 29.8 169 783-959 93-268 (291)
222 PF13281 DUF4071: Domain of un 95.9 1.8 3.8E-05 45.9 21.4 167 790-960 146-338 (374)
223 PRK15331 chaperone protein Sic 95.9 0.24 5.2E-06 44.9 12.9 92 790-883 42-133 (165)
224 PF08631 SPO22: Meiosis protei 95.9 2.7 5.8E-05 43.6 25.5 53 691-743 4-64 (278)
225 KOG1585 Protein required for f 95.8 1.5 3.2E-05 42.3 18.0 26 613-638 33-58 (308)
226 KOG1920 IkappaB kinase complex 95.8 2.7 5.8E-05 50.2 23.8 20 146-165 685-704 (1265)
227 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.075 1.6E-06 56.5 10.7 98 783-886 73-176 (453)
228 PF13424 TPR_12: Tetratricopep 95.7 0.024 5.1E-07 45.3 5.6 23 824-846 9-31 (78)
229 COG1729 Uncharacterized protei 95.7 0.18 4E-06 49.7 12.2 96 822-918 144-243 (262)
230 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.19 4E-06 53.7 13.0 99 852-956 71-176 (453)
231 COG5107 RNA14 Pre-mRNA 3'-end 95.6 3.7 8.1E-05 43.4 37.4 146 785-936 397-546 (660)
232 PF04184 ST7: ST7 protein; In 95.6 0.85 1.8E-05 49.0 17.4 61 892-953 261-323 (539)
233 KOG1941 Acetylcholine receptor 95.6 0.58 1.3E-05 47.5 15.4 227 691-917 17-273 (518)
234 KOG0543 FKBP-type peptidyl-pro 95.5 0.53 1.2E-05 49.1 15.3 140 791-954 214-355 (397)
235 COG4105 ComL DNA uptake lipopr 95.3 3.3 7.1E-05 40.8 20.7 165 791-960 40-237 (254)
236 PF12921 ATP13: Mitochondrial 95.3 0.34 7.4E-06 42.5 11.5 100 274-379 1-101 (126)
237 PF04840 Vps16_C: Vps16, C-ter 95.3 4.7 0.0001 42.3 29.9 103 441-563 182-284 (319)
238 KOG2114 Vacuolar assembly/sort 95.2 7.8 0.00017 44.6 26.5 53 791-847 711-763 (933)
239 COG1729 Uncharacterized protei 95.2 0.23 5E-06 49.0 11.2 60 892-953 144-206 (262)
240 PF08631 SPO22: Meiosis protei 95.1 4.8 0.0001 41.7 25.5 168 856-1033 85-272 (278)
241 KOG2610 Uncharacterized conser 95.1 1.3 2.8E-05 44.7 15.9 152 795-950 113-272 (491)
242 COG4785 NlpI Lipoprotein NlpI, 95.1 2.9 6.3E-05 39.5 17.0 179 763-954 78-266 (297)
243 KOG4555 TPR repeat-containing 95.1 0.34 7.4E-06 41.2 10.1 54 794-848 52-105 (175)
244 PF10300 DUF3808: Protein of u 95.0 0.75 1.6E-05 51.6 16.1 143 806-954 178-334 (468)
245 PF03704 BTAD: Bacterial trans 94.8 0.24 5.2E-06 45.5 10.0 70 787-857 64-138 (146)
246 KOG4555 TPR repeat-containing 94.8 0.43 9.4E-06 40.6 10.0 89 829-919 52-144 (175)
247 PF10300 DUF3808: Protein of u 94.7 1.2 2.6E-05 49.9 16.9 162 789-953 192-375 (468)
248 PF13512 TPR_18: Tetratricopep 94.7 1.2 2.6E-05 39.5 13.1 54 830-883 20-75 (142)
249 COG4105 ComL DNA uptake lipopr 94.6 5.1 0.00011 39.5 20.7 58 687-744 41-100 (254)
250 PF04184 ST7: ST7 protein; In 94.6 1.8 3.9E-05 46.6 16.3 60 859-918 263-323 (539)
251 PF13428 TPR_14: Tetratricopep 94.5 0.1 2.3E-06 35.8 5.1 33 926-960 2-34 (44)
252 PF04840 Vps16_C: Vps16, C-ter 94.5 7.4 0.00016 40.9 31.4 102 337-458 183-284 (319)
253 PF12921 ATP13: Mitochondrial 94.2 0.53 1.1E-05 41.4 9.9 49 502-550 48-97 (126)
254 COG3118 Thioredoxin domain-con 94.2 5.4 0.00012 40.1 17.6 142 689-834 143-286 (304)
255 KOG1941 Acetylcholine receptor 94.2 2.9 6.2E-05 42.8 15.8 167 787-953 85-274 (518)
256 PF13431 TPR_17: Tetratricopep 94.1 0.052 1.1E-06 34.6 2.6 31 913-945 2-33 (34)
257 KOG2396 HAT (Half-A-TPR) repea 94.1 10 0.00023 41.0 39.7 67 468-535 102-169 (568)
258 KOG1258 mRNA processing protei 94.0 12 0.00027 41.6 36.0 123 680-805 297-420 (577)
259 COG3118 Thioredoxin domain-con 94.0 7.2 0.00016 39.3 18.1 142 375-520 143-286 (304)
260 smart00299 CLH Clathrin heavy 94.0 3.3 7.2E-05 37.6 15.4 24 278-301 72-95 (140)
261 KOG1258 mRNA processing protei 93.9 13 0.00028 41.4 40.4 184 715-939 297-489 (577)
262 PRK09687 putative lyase; Provi 93.8 9.2 0.0002 39.5 28.0 218 783-1035 35-262 (280)
263 KOG1586 Protein required for f 93.6 7.2 0.00016 37.6 19.5 56 901-958 165-226 (288)
264 smart00299 CLH Clathrin heavy 93.6 4.5 9.7E-05 36.7 15.5 84 108-196 12-95 (140)
265 PF09205 DUF1955: Domain of un 93.5 3.1 6.7E-05 35.9 12.5 66 890-956 86-151 (161)
266 COG4649 Uncharacterized protei 93.4 5 0.00011 36.5 14.2 54 796-849 69-123 (221)
267 KOG2114 Vacuolar assembly/sort 93.3 20 0.00043 41.6 27.4 152 140-301 336-489 (933)
268 PF13428 TPR_14: Tetratricopep 93.3 0.27 5.8E-06 33.7 5.2 39 892-932 3-42 (44)
269 PF09613 HrpB1_HrpK: Bacterial 93.2 2.4 5.3E-05 38.5 12.4 19 935-953 54-72 (160)
270 KOG2280 Vacuolar assembly/sort 93.2 19 0.00041 41.2 30.4 98 465-565 426-531 (829)
271 PF00515 TPR_1: Tetratricopept 93.2 0.19 4.2E-06 32.0 4.1 32 926-959 2-33 (34)
272 PF07719 TPR_2: Tetratricopept 93.1 0.19 4.2E-06 32.0 4.1 32 926-959 2-33 (34)
273 KOG1920 IkappaB kinase complex 93.1 25 0.00055 42.6 23.3 111 787-917 941-1053(1265)
274 PF04053 Coatomer_WDAD: Coatom 93.0 1.3 2.9E-05 48.7 12.9 155 342-531 272-427 (443)
275 COG4649 Uncharacterized protei 93.0 5.6 0.00012 36.3 14.0 138 821-959 60-201 (221)
276 PF13176 TPR_7: Tetratricopept 92.3 0.29 6.2E-06 31.7 4.1 27 927-953 1-27 (36)
277 PF13512 TPR_18: Tetratricopep 92.0 3.2 6.9E-05 37.0 11.3 65 787-854 12-79 (142)
278 PF06552 TOM20_plant: Plant sp 91.8 1.3 2.9E-05 40.8 8.9 72 940-1016 50-122 (186)
279 PF04053 Coatomer_WDAD: Coatom 91.6 3.2 7E-05 45.8 13.7 45 796-846 329-373 (443)
280 KOG1550 Extracellular protein 91.1 35 0.00075 39.5 27.0 216 765-1002 308-539 (552)
281 PF02259 FAT: FAT domain; Int 91.0 26 0.00057 37.9 25.4 64 820-883 146-212 (352)
282 KOG2610 Uncharacterized conser 90.9 5.6 0.00012 40.4 12.9 116 414-531 116-234 (491)
283 PF00515 TPR_1: Tetratricopept 90.8 0.53 1.1E-05 29.9 4.1 27 822-848 3-29 (34)
284 PF06552 TOM20_plant: Plant sp 90.7 2.8 6.2E-05 38.7 10.0 60 906-969 51-122 (186)
285 COG2976 Uncharacterized protei 90.7 9 0.00019 36.0 13.2 91 933-1036 97-188 (207)
286 COG3629 DnrI DNA-binding trans 90.6 2.5 5.5E-05 42.7 10.6 77 785-862 153-234 (280)
287 KOG3941 Intermediate in Toll s 90.5 1.8 3.9E-05 42.6 9.0 87 381-486 87-173 (406)
288 PF09205 DUF1955: Domain of un 90.4 11 0.00024 32.7 14.5 62 683-745 89-150 (161)
289 KOG3941 Intermediate in Toll s 90.1 2.4 5.1E-05 41.8 9.4 115 329-463 65-186 (406)
290 COG2976 Uncharacterized protei 90.1 14 0.00031 34.7 13.9 91 863-955 97-189 (207)
291 PF13431 TPR_17: Tetratricopep 90.0 0.31 6.7E-06 31.1 2.5 31 843-875 2-33 (34)
292 PF13170 DUF4003: Protein of u 89.9 27 0.00059 36.3 20.0 24 908-931 200-223 (297)
293 PF13176 TPR_7: Tetratricopept 89.8 0.69 1.5E-05 29.9 4.0 25 823-847 2-26 (36)
294 COG4785 NlpI Lipoprotein NlpI, 89.8 19 0.00041 34.4 19.4 193 792-1003 72-268 (297)
295 KOG4648 Uncharacterized conser 89.6 1.9 4.1E-05 43.6 8.5 50 830-881 107-157 (536)
296 KOG1586 Protein required for f 89.4 22 0.00047 34.5 20.6 30 341-370 164-193 (288)
297 COG3629 DnrI DNA-binding trans 89.0 3.7 8E-05 41.6 10.3 71 891-963 154-230 (280)
298 PF13181 TPR_8: Tetratricopept 88.9 0.59 1.3E-05 29.7 3.3 31 927-959 3-33 (34)
299 KOG4642 Chaperone-dependent E3 88.8 6.6 0.00014 38.0 11.1 115 902-1031 22-141 (284)
300 PF10602 RPN7: 26S proteasome 88.7 9.3 0.0002 36.2 12.5 62 787-848 38-101 (177)
301 PF10602 RPN7: 26S proteasome 88.6 4.4 9.6E-05 38.4 10.2 63 821-883 37-101 (177)
302 COG3947 Response regulator con 88.4 30 0.00065 34.8 16.9 54 898-953 287-341 (361)
303 KOG4234 TPR repeat-containing 88.3 4.4 9.5E-05 37.8 9.3 19 830-848 105-123 (271)
304 PF13170 DUF4003: Protein of u 88.2 35 0.00076 35.5 20.3 130 836-967 78-224 (297)
305 COG1747 Uncharacterized N-term 88.1 44 0.00096 36.5 23.5 189 784-981 65-261 (711)
306 KOG4234 TPR repeat-containing 88.0 3.3 7.1E-05 38.6 8.3 93 863-960 103-201 (271)
307 PF07719 TPR_2: Tetratricopept 88.0 1.1 2.4E-05 28.3 4.1 26 823-848 4-29 (34)
308 PF09613 HrpB1_HrpK: Bacterial 87.7 14 0.0003 33.8 12.0 86 866-955 21-107 (160)
309 PRK09687 putative lyase; Provi 87.4 38 0.00083 35.0 28.1 121 784-918 141-262 (280)
310 KOG2066 Vacuolar assembly/sort 87.1 66 0.0014 37.3 27.6 99 446-553 366-467 (846)
311 KOG1464 COP9 signalosome, subu 86.7 35 0.00075 33.7 20.6 261 693-961 40-338 (440)
312 KOG2280 Vacuolar assembly/sort 86.6 68 0.0015 37.0 37.8 110 823-951 687-796 (829)
313 KOG0276 Vesicle coat complex C 86.0 18 0.00039 40.1 13.7 132 368-532 616-747 (794)
314 TIGR02561 HrpB1_HrpK type III 85.8 18 0.00038 32.5 11.3 50 867-918 22-72 (153)
315 KOG4648 Uncharacterized conser 85.7 2.5 5.5E-05 42.7 6.9 93 862-960 104-198 (536)
316 PF07035 Mic1: Colon cancer-as 85.6 30 0.00066 32.1 15.3 20 361-380 24-43 (167)
317 PF10345 Cohesin_load: Cohesin 85.5 85 0.0018 37.1 41.4 51 903-953 547-605 (608)
318 KOG2471 TPR repeat-containing 84.8 24 0.00052 38.1 13.6 107 792-900 247-379 (696)
319 PF00637 Clathrin: Region in C 84.6 0.053 1.2E-06 49.7 -4.9 82 110-195 14-95 (143)
320 PF09986 DUF2225: Uncharacteri 84.4 9.2 0.0002 37.5 10.2 97 937-1038 89-196 (214)
321 PF13374 TPR_10: Tetratricopep 84.3 2.2 4.8E-05 28.5 4.4 28 926-953 3-30 (42)
322 PRK15180 Vi polysaccharide bio 83.8 69 0.0015 34.6 29.8 89 938-1037 711-806 (831)
323 PF04097 Nic96: Nup93/Nic96; 83.5 1E+02 0.0022 36.3 20.7 37 512-550 264-300 (613)
324 PF00637 Clathrin: Region in C 83.5 1.5 3.2E-05 40.1 4.2 83 212-301 14-96 (143)
325 PF13174 TPR_6: Tetratricopept 83.4 1.2 2.5E-05 27.9 2.5 27 1009-1035 2-28 (33)
326 PF13174 TPR_6: Tetratricopept 83.2 1.7 3.7E-05 27.2 3.2 29 929-959 4-32 (33)
327 PF07035 Mic1: Colon cancer-as 82.7 41 0.00089 31.3 15.9 134 387-534 15-148 (167)
328 PF13181 TPR_8: Tetratricopept 82.6 2.3 5E-05 26.9 3.6 27 892-918 3-29 (34)
329 PF10345 Cohesin_load: Cohesin 82.4 1.1E+02 0.0024 36.1 42.0 167 330-497 58-251 (608)
330 KOG1550 Extracellular protein 81.8 1.1E+02 0.0024 35.5 27.7 246 692-953 261-537 (552)
331 TIGR02561 HrpB1_HrpK type III 81.7 35 0.00076 30.7 11.4 51 832-884 22-73 (153)
332 COG0790 FOG: TPR repeat, SEL1 81.7 72 0.0016 33.4 22.5 30 988-1021 207-236 (292)
333 PF07721 TPR_4: Tetratricopept 79.5 2.6 5.6E-05 24.8 2.8 23 1009-1031 3-25 (26)
334 PF02259 FAT: FAT domain; Int 79.5 97 0.0021 33.5 23.2 65 784-848 145-212 (352)
335 PF11207 DUF2989: Protein of u 79.3 19 0.00041 34.3 9.6 78 657-735 118-198 (203)
336 KOG4570 Uncharacterized conser 79.2 22 0.00047 36.1 10.4 98 329-430 62-164 (418)
337 KOG2396 HAT (Half-A-TPR) repea 78.9 1.1E+02 0.0023 33.7 41.8 27 788-814 463-489 (568)
338 KOG1464 COP9 signalosome, subu 78.8 72 0.0016 31.6 17.4 59 895-953 150-219 (440)
339 PF11207 DUF2989: Protein of u 78.6 17 0.00037 34.6 9.2 73 801-874 122-197 (203)
340 KOG0276 Vesicle coat complex C 78.4 44 0.00096 37.3 13.2 27 331-357 666-692 (794)
341 KOG4570 Uncharacterized conser 77.1 24 0.00052 35.8 10.0 93 787-883 66-163 (418)
342 TIGR02508 type_III_yscG type I 75.9 27 0.00058 28.7 8.1 50 900-955 49-98 (115)
343 PF13374 TPR_10: Tetratricopep 75.7 5.8 0.00013 26.4 4.2 26 242-267 4-29 (42)
344 smart00028 TPR Tetratricopepti 75.2 5.4 0.00012 24.1 3.8 27 927-953 3-29 (34)
345 COG5159 RPN6 26S proteasome re 75.1 62 0.0014 32.4 12.0 22 931-952 131-152 (421)
346 PF02284 COX5A: Cytochrome c o 74.8 48 0.001 27.5 9.5 61 593-654 27-87 (108)
347 PF04097 Nic96: Nup93/Nic96; 74.6 1.8E+02 0.004 34.2 23.0 43 476-519 116-158 (613)
348 cd00923 Cyt_c_Oxidase_Va Cytoc 74.4 44 0.00096 27.4 8.9 62 591-653 22-83 (103)
349 KOG2066 Vacuolar assembly/sort 73.9 1.9E+02 0.004 33.9 32.1 91 836-940 610-705 (846)
350 COG0790 FOG: TPR repeat, SEL1 73.3 1.2E+02 0.0027 31.6 23.9 146 800-955 92-267 (292)
351 COG3947 Response regulator con 72.9 1.1E+02 0.0025 31.0 15.6 42 347-390 149-190 (361)
352 PRK13800 putative oxidoreducta 72.8 2.5E+02 0.0055 35.0 26.4 125 889-1035 755-880 (897)
353 TIGR03504 FimV_Cterm FimV C-te 72.5 5.2 0.00011 27.3 3.1 28 1011-1038 3-30 (44)
354 PF04910 Tcf25: Transcriptiona 70.4 1.6E+02 0.0035 31.8 18.5 151 855-1033 40-219 (360)
355 COG4455 ImpE Protein of avirul 69.6 1.1E+02 0.0024 29.6 13.5 59 897-959 8-67 (273)
356 KOG4507 Uncharacterized conser 69.1 24 0.00051 39.1 8.5 99 762-863 619-718 (886)
357 PF14853 Fis1_TPR_C: Fis1 C-te 68.5 15 0.00033 26.3 4.9 31 930-962 6-36 (53)
358 KOG3364 Membrane protein invol 68.5 69 0.0015 28.3 9.5 71 887-960 29-104 (149)
359 PF07575 Nucleopor_Nup85: Nup8 68.3 2.1E+02 0.0046 33.4 17.1 23 472-495 150-172 (566)
360 PF09986 DUF2225: Uncharacteri 68.0 95 0.0021 30.5 12.0 28 927-954 167-194 (214)
361 KOG3364 Membrane protein invol 67.9 87 0.0019 27.7 10.3 70 852-924 29-103 (149)
362 PF10579 Rapsyn_N: Rapsyn N-te 67.4 17 0.00036 28.4 5.1 46 832-877 18-65 (80)
363 KOG0687 26S proteasome regulat 66.9 1.6E+02 0.0035 30.4 15.4 93 613-707 106-208 (393)
364 COG2909 MalT ATP-dependent tra 66.7 2.8E+02 0.0062 33.2 29.3 355 665-1035 331-725 (894)
365 KOG1308 Hsp70-interacting prot 66.7 4.7 0.0001 41.3 2.7 92 866-960 125-217 (377)
366 KOG4279 Serine/threonine prote 66.3 1.3E+02 0.0029 34.7 13.6 102 830-960 297-399 (1226)
367 PF07721 TPR_4: Tetratricopept 66.2 9.4 0.0002 22.4 2.9 21 929-949 5-25 (26)
368 PF04910 Tcf25: Transcriptiona 65.1 2.1E+02 0.0045 31.0 15.4 29 784-812 39-67 (360)
369 PF07575 Nucleopor_Nup85: Nup8 65.0 2.8E+02 0.006 32.4 19.9 26 138-164 149-174 (566)
370 cd00923 Cyt_c_Oxidase_Va Cytoc 64.7 43 0.00092 27.5 7.0 38 844-881 31-68 (103)
371 KOG2063 Vacuolar assembly/sort 64.7 3.3E+02 0.0071 33.2 23.3 59 334-394 310-374 (877)
372 KOG4279 Serine/threonine prote 64.6 91 0.002 35.9 12.0 105 902-1031 255-368 (1226)
373 KOG4521 Nuclear pore complex, 64.6 1.7E+02 0.0038 35.9 14.7 131 891-1029 984-1124(1480)
374 KOG4521 Nuclear pore complex, 64.2 2E+02 0.0044 35.4 15.1 156 787-950 922-1127(1480)
375 TIGR02508 type_III_yscG type I 63.8 68 0.0015 26.5 8.0 31 329-361 68-98 (115)
376 COG1747 Uncharacterized N-term 63.4 2.4E+02 0.0053 31.2 25.3 96 435-535 65-160 (711)
377 KOG4642 Chaperone-dependent E3 63.2 1.3E+02 0.0028 29.7 11.2 83 760-846 20-104 (284)
378 PF10579 Rapsyn_N: Rapsyn N-te 63.0 19 0.00042 28.1 4.7 47 902-948 18-66 (80)
379 KOG0687 26S proteasome regulat 62.9 1.9E+02 0.0042 29.9 13.8 65 891-955 105-174 (393)
380 KOG4507 Uncharacterized conser 61.5 29 0.00063 38.4 7.5 84 832-918 619-704 (886)
381 COG4941 Predicted RNA polymera 60.4 2E+02 0.0043 30.0 12.4 120 800-925 271-398 (415)
382 KOG2063 Vacuolar assembly/sort 60.3 2.5E+02 0.0054 34.1 15.3 26 369-394 507-532 (877)
383 smart00028 TPR Tetratricopepti 60.3 15 0.00033 21.8 3.6 18 829-846 10-27 (34)
384 KOG0686 COP9 signalosome, subu 60.1 2.5E+02 0.0054 30.2 15.6 158 787-954 152-333 (466)
385 PF13929 mRNA_stabil: mRNA sta 59.9 2.1E+02 0.0046 29.3 12.6 111 154-264 144-262 (292)
386 COG4455 ImpE Protein of avirul 59.4 68 0.0015 31.0 8.5 74 476-550 6-81 (273)
387 PF02284 COX5A: Cytochrome c o 59.1 1.1E+02 0.0023 25.6 8.8 59 663-722 28-86 (108)
388 TIGR03504 FimV_Cterm FimV C-te 57.9 21 0.00045 24.4 3.8 21 862-882 6-26 (44)
389 PF04190 DUF410: Protein of un 56.8 2.3E+02 0.0051 28.9 17.3 51 924-978 89-139 (260)
390 COG5187 RPN7 26S proteasome re 56.4 2.3E+02 0.005 28.7 13.3 98 819-918 114-220 (412)
391 KOG2908 26S proteasome regulat 56.2 2.6E+02 0.0056 29.3 17.2 83 866-948 86-180 (380)
392 PRK12798 chemotaxis protein; R 56.1 3E+02 0.0065 29.9 20.6 154 797-954 124-286 (421)
393 PF10366 Vps39_1: Vacuolar sor 56.0 30 0.00064 29.5 5.4 26 1010-1035 42-67 (108)
394 PF11846 DUF3366: Domain of un 55.1 33 0.00071 33.2 6.4 48 907-958 128-175 (193)
395 PF13934 ELYS: Nuclear pore co 55.0 88 0.0019 31.1 9.3 21 108-128 113-133 (226)
396 PF07163 Pex26: Pex26 protein; 54.1 1.6E+02 0.0034 29.9 10.4 87 548-634 90-181 (309)
397 COG4976 Predicted methyltransf 53.9 1.2E+02 0.0027 29.5 9.3 52 866-918 6-57 (287)
398 PF07163 Pex26: Pex26 protein; 53.2 1.4E+02 0.003 30.3 9.9 85 827-913 90-181 (309)
399 PF08424 NRDE-2: NRDE-2, neces 53.2 3.1E+02 0.0067 29.2 17.8 79 453-533 48-129 (321)
400 COG4941 Predicted RNA polymera 53.1 2.3E+02 0.0049 29.6 11.5 116 905-1035 271-393 (415)
401 PRK13800 putative oxidoreducta 51.2 5.9E+02 0.013 31.9 29.5 155 782-953 725-880 (897)
402 KOG1308 Hsp70-interacting prot 51.2 18 0.00038 37.3 3.7 90 798-890 127-217 (377)
403 PRK10941 hypothetical protein; 51.2 1.1E+02 0.0024 31.4 9.4 63 894-960 185-248 (269)
404 COG4259 Uncharacterized protei 50.2 92 0.002 25.6 6.7 56 907-964 54-109 (121)
405 KOG0376 Serine-threonine phosp 49.1 37 0.00081 36.9 5.9 103 827-935 11-115 (476)
406 KOG0376 Serine-threonine phosp 48.8 28 0.0006 37.9 4.9 103 757-865 11-115 (476)
407 PF09477 Type_III_YscG: Bacter 48.3 1.1E+02 0.0024 25.8 7.0 79 255-361 21-99 (116)
408 KOG2062 26S proteasome regulat 48.0 5.2E+02 0.011 30.3 37.4 225 787-1035 399-634 (929)
409 PF00244 14-3-3: 14-3-3 protei 47.3 2.5E+02 0.0054 28.2 11.2 48 988-1035 142-197 (236)
410 PF08424 NRDE-2: NRDE-2, neces 47.2 3.8E+02 0.0082 28.5 20.0 80 487-568 47-129 (321)
411 PRK10941 hypothetical protein; 46.7 1.8E+02 0.004 29.8 10.2 60 788-848 184-243 (269)
412 KOG0545 Aryl-hydrocarbon recep 46.6 3.1E+02 0.0067 27.3 12.2 60 896-959 236-296 (329)
413 KOG2908 26S proteasome regulat 45.9 2.1E+02 0.0044 29.9 10.0 76 897-972 82-168 (380)
414 PF14853 Fis1_TPR_C: Fis1 C-te 44.8 98 0.0021 22.3 5.7 26 827-854 8-33 (53)
415 PF12862 Apc5: Anaphase-promot 44.6 1.2E+02 0.0025 25.1 7.2 22 861-882 47-68 (94)
416 PF09670 Cas_Cas02710: CRISPR- 44.1 3.3E+02 0.0072 29.7 12.5 53 900-953 141-197 (379)
417 KOG2062 26S proteasome regulat 44.1 6E+02 0.013 29.9 39.1 255 586-848 367-634 (929)
418 KOG2659 LisH motif-containing 43.9 81 0.0018 30.8 6.7 30 921-950 22-51 (228)
419 PF11663 Toxin_YhaV: Toxin wit 43.6 30 0.00065 30.3 3.4 30 252-283 107-136 (140)
420 PF14689 SPOB_a: Sensor_kinase 43.6 72 0.0016 23.8 5.1 23 931-953 29-51 (62)
421 PF11663 Toxin_YhaV: Toxin wit 43.4 26 0.00056 30.7 3.0 30 116-147 108-137 (140)
422 KOG0686 COP9 signalosome, subu 42.9 4.7E+02 0.01 28.3 13.7 61 71-131 153-215 (466)
423 KOG0292 Vesicle coat complex C 42.7 6.8E+02 0.015 30.2 21.5 104 370-500 624-727 (1202)
424 PF13929 mRNA_stabil: mRNA sta 42.2 4.1E+02 0.0088 27.4 15.3 108 487-594 144-256 (292)
425 PF11838 ERAP1_C: ERAP1-like C 39.7 4.8E+02 0.01 27.6 21.5 80 221-303 146-229 (324)
426 PRK15180 Vi polysaccharide bio 39.7 5.5E+02 0.012 28.2 28.8 87 447-535 334-420 (831)
427 PF10366 Vps39_1: Vacuolar sor 39.5 2.2E+02 0.0047 24.3 8.0 26 243-268 42-67 (108)
428 KOG3807 Predicted membrane pro 39.4 4.6E+02 0.0099 27.2 15.8 211 756-994 190-423 (556)
429 PF14689 SPOB_a: Sensor_kinase 38.9 72 0.0016 23.8 4.5 30 365-394 22-51 (62)
430 KOG2422 Uncharacterized conser 38.8 6.4E+02 0.014 28.7 15.9 92 933-1034 350-446 (665)
431 PHA02537 M terminase endonucle 38.3 2.4E+02 0.0052 28.0 9.1 120 818-962 82-213 (230)
432 PRK11619 lytic murein transgly 37.6 7.7E+02 0.017 29.3 40.6 448 481-960 43-511 (644)
433 KOG0551 Hsp90 co-chaperone CNS 37.5 3.2E+02 0.007 28.6 9.9 64 895-960 86-152 (390)
434 smart00777 Mad3_BUB1_I Mad3/BU 36.9 92 0.002 27.4 5.5 43 989-1031 80-123 (125)
435 PRK13342 recombination factor 36.8 6.3E+02 0.014 28.1 19.4 42 510-551 231-275 (413)
436 PF09670 Cas_Cas02710: CRISPR- 36.7 4.2E+02 0.0091 29.0 11.8 57 792-849 138-198 (379)
437 KOG0991 Replication factor C, 35.0 4.6E+02 0.01 25.9 14.4 38 922-960 236-273 (333)
438 PHA02875 ankyrin repeat protei 34.6 6.7E+02 0.014 27.7 13.7 195 78-294 9-218 (413)
439 PF09477 Type_III_YscG: Bacter 34.3 2.9E+02 0.0063 23.4 8.7 50 863-918 48-97 (116)
440 KOG0403 Neoplastic transformat 34.2 6.6E+02 0.014 27.5 27.6 60 790-850 514-573 (645)
441 PF12862 Apc5: Anaphase-promot 33.2 2E+02 0.0042 23.7 6.8 19 900-918 51-69 (94)
442 PF13762 MNE1: Mitochondrial s 32.8 3.8E+02 0.0082 24.3 8.8 81 69-149 40-126 (145)
443 KOG2300 Uncharacterized conser 31.6 7.6E+02 0.017 27.5 37.8 159 866-1039 334-521 (629)
444 KOG4077 Cytochrome c oxidase, 31.2 3.1E+02 0.0067 24.0 7.3 47 663-709 67-113 (149)
445 smart00386 HAT HAT (Half-A-TPR 30.1 1.1E+02 0.0024 18.3 3.9 13 221-233 3-15 (33)
446 PF04762 IKI3: IKI3 family; I 29.9 1.2E+03 0.026 29.3 17.4 26 243-268 815-842 (928)
447 KOG2581 26S proteasome regulat 29.9 7.5E+02 0.016 26.8 12.9 90 864-959 178-279 (493)
448 KOG2471 TPR repeat-containing 29.8 8.2E+02 0.018 27.3 24.8 58 892-953 621-683 (696)
449 PF12968 DUF3856: Domain of Un 29.4 3.8E+02 0.0082 23.3 10.8 62 891-952 56-127 (144)
450 PF11846 DUF3366: Domain of un 29.3 2.3E+02 0.0049 27.3 7.7 33 886-918 140-172 (193)
451 PF02631 RecX: RecX family; I 28.7 3.9E+02 0.0085 23.2 9.3 98 907-1022 9-107 (121)
452 PF10475 DUF2450: Protein of u 28.5 4.9E+02 0.011 27.1 10.4 53 336-394 103-155 (291)
453 PHA02875 ankyrin repeat protei 28.0 8.5E+02 0.018 26.9 17.0 52 342-401 176-230 (413)
454 PF04190 DUF410: Protein of un 28.0 6.7E+02 0.014 25.6 18.4 23 792-814 148-170 (260)
455 PF15297 CKAP2_C: Cytoskeleton 28.0 5E+02 0.011 27.5 9.7 64 836-901 119-186 (353)
456 KOG4077 Cytochrome c oxidase, 27.8 3.5E+02 0.0077 23.7 7.1 47 594-640 67-113 (149)
457 PF12931 Sec16_C: Sec23-bindin 27.8 6.8E+02 0.015 26.0 11.2 101 924-1033 115-224 (284)
458 KOG2582 COP9 signalosome, subu 27.6 7.8E+02 0.017 26.3 16.4 55 691-745 288-346 (422)
459 PF08311 Mad3_BUB1_I: Mad3/BUB 27.1 4.4E+02 0.0095 23.3 9.0 43 838-880 81-124 (126)
460 PF11848 DUF3368: Domain of un 27.1 2.2E+02 0.0049 19.9 5.2 28 518-545 14-41 (48)
461 PF07720 TPR_3: Tetratricopept 27.0 1.7E+02 0.0038 18.9 4.2 21 928-948 4-24 (36)
462 PF10255 Paf67: RNA polymerase 27.0 2.6E+02 0.0057 30.5 8.0 92 826-917 81-191 (404)
463 KOG0991 Replication factor C, 25.7 6.7E+02 0.014 24.9 14.6 74 849-925 188-273 (333)
464 PF12753 Nro1: Nuclear pore co 25.7 1.8E+02 0.004 31.1 6.4 59 941-1002 334-392 (404)
465 COG5187 RPN7 26S proteasome re 25.7 7.4E+02 0.016 25.4 14.0 29 506-534 115-143 (412)
466 PF02184 HAT: HAT (Half-A-TPR) 25.6 1.6E+02 0.0035 18.6 3.5 22 836-859 3-24 (32)
467 PF15297 CKAP2_C: Cytoskeleton 25.6 3.5E+02 0.0076 28.6 8.2 62 663-726 121-186 (353)
468 cd00280 TRFH Telomeric Repeat 25.4 4.3E+02 0.0093 25.1 7.8 23 896-918 117-139 (200)
469 cd00280 TRFH Telomeric Repeat 24.0 4.8E+02 0.01 24.8 7.8 23 512-534 117-139 (200)
470 PF11817 Foie-gras_1: Foie gra 23.8 4E+02 0.0088 26.9 8.6 58 895-952 183-245 (247)
471 PRK10564 maltose regulon perip 23.8 1.8E+02 0.0039 30.0 5.8 36 363-398 253-289 (303)
472 PF14929 TAF1_subA: TAF RNA Po 23.5 1.2E+03 0.026 27.0 24.6 35 427-461 124-158 (547)
473 COG5108 RPO41 Mitochondrial DN 23.1 6.1E+02 0.013 29.3 9.8 75 441-518 33-115 (1117)
474 PF14561 TPR_20: Tetratricopep 22.5 4.3E+02 0.0094 21.6 8.9 75 491-566 8-83 (90)
475 PF09454 Vps23_core: Vps23 cor 22.5 2.7E+02 0.0059 21.1 5.1 50 328-378 5-54 (65)
476 PF11817 Foie-gras_1: Foie gra 22.5 2.8E+02 0.0061 28.1 7.1 56 861-916 184-244 (247)
477 PRK10564 maltose regulon perip 22.4 1.5E+02 0.0032 30.6 4.8 43 327-369 252-295 (303)
478 PRK13342 recombination factor 22.3 1.1E+03 0.024 26.2 20.2 24 799-822 244-267 (413)
479 PF11768 DUF3312: Protein of u 22.1 9.8E+02 0.021 27.3 11.2 123 246-396 414-537 (545)
480 COG4976 Predicted methyltransf 22.0 1.9E+02 0.0041 28.4 5.1 52 762-814 7-58 (287)
481 KOG3824 Huntingtin interacting 21.4 1.6E+02 0.0034 30.1 4.7 55 865-923 126-181 (472)
482 cd02680 MIT_calpain7_2 MIT: do 21.2 1.9E+02 0.0042 22.7 4.2 32 906-953 3-34 (75)
483 PF13762 MNE1: Mitochondrial s 21.0 6.4E+02 0.014 23.0 11.6 98 266-379 28-128 (145)
484 PF10475 DUF2450: Protein of u 20.9 4.7E+02 0.01 27.3 8.6 52 791-848 104-155 (291)
485 PF09454 Vps23_core: Vps23 cor 20.4 2.5E+02 0.0055 21.3 4.6 49 399-448 6-54 (65)
486 KOG0551 Hsp90 co-chaperone CNS 20.2 4.1E+02 0.009 27.8 7.3 88 791-880 87-178 (390)
487 COG2178 Predicted RNA-binding 20.1 7.8E+02 0.017 23.7 10.2 18 936-953 132-149 (204)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-87 Score=809.37 Aligned_cols=712 Identities=20% Similarity=0.269 Sum_probs=593.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 001637 67 YAYFFCTLIQLYLTCGRFAKASDTFFTMRNFNIIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVH 146 (1039)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 146 (1039)
....++.+++.|++.|++++|..+|+.|.+.++.|+..+|+.++++|.+.+.++.|..+|..+.+.|..++.+.+|.++.
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHH
Q 001637 147 SFCKVGNLSFALDFLRNVDIDVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEW 226 (1039)
Q Consensus 147 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 226 (1039)
+|++.|+++.|+.+|+++. +||.++||++|.+|++.|++++|+++|.+|...|+.||.+||++++++|++.++++.+.+
T Consensus 130 ~~~~~g~~~~A~~~f~~m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred HHHhCCChHHHHHHHhcCC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 9999999999999999996 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhccc
Q 001637 227 VMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQK 306 (1039)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 306 (1039)
++..+++.|..+|+.+||+||.+|+++|++++|.++|++|. .||.++||++|.+|++.|++++|.++|++|.+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~--- 281 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE--- 281 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999986 46888999999999999999999999999987
Q ss_pred CCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHH
Q 001637 307 ERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAK 386 (1039)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 386 (1039)
.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.
T Consensus 282 ------------------~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 282 ------------------LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred ------------------cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHH
Confidence 67888989999999999999999999999999988888889889999999999999999998
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 001637 387 MLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHN 466 (1039)
Q Consensus 387 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (1039)
++|++|. .||.++|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|
T Consensus 344 ~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 344 KVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 8888885 367788888888888888888888888888888888887777777777777777777777777777777
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001637 467 LVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAA 546 (1039)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 546 (1039)
+.|+..+|++|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~ 494 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIA 494 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHH
Confidence 777777777777777777777777777777653 3566666666666666666666666666654 24444444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 001637 547 LIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGK 626 (1039)
Q Consensus 547 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 626 (1039)
++.+|++.|+.+.+
T Consensus 495 lL~a~~~~g~l~~~------------------------------------------------------------------ 508 (857)
T PLN03077 495 ALSACARIGALMCG------------------------------------------------------------------ 508 (857)
T ss_pred HHHHHhhhchHHHh------------------------------------------------------------------
Confidence 44444433332222
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001637 627 ETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKCEVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEM 706 (1039)
Q Consensus 627 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 706 (1039)
.+++..+.+ .|+.+|..++++|+++|+++|++++|.++|+.+
T Consensus 509 ----~~i~~~~~~----------------------------------~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 509 ----KEIHAHVLR----------------------------------TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred ----HHHHHHHHH----------------------------------hCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 222222222 233456666666666666666666666555543
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHH
Q 001637 707 RRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQA 786 (1039)
Q Consensus 707 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 786 (1039)
. +|..
T Consensus 551 -----~----------------------------------------------------------------------~d~~ 555 (857)
T PLN03077 551 -----E----------------------------------------------------------------------KDVV 555 (857)
T ss_pred -----C----------------------------------------------------------------------CChh
Confidence 2 3445
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCChhHHHHHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMI-NEGVSPNTATYNILLGIF 865 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~ 865 (1039)
+||++|.+|++.|+.++|.++|++|.+.|+.||.+||++++.+|.+.|.+++|.++|++|. +.|+.|+..+|+++++++
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5666666777777777777777788888889999999999999999999999999999999 679999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHH
Q 001637 866 LGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQA 944 (1039)
Q Consensus 866 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 944 (1039)
++.|++++|.+++++|. ++||..+|++|+.+|...|+.+.|+...+++.+ ++| +...|..|.+.|+..|+|++|
T Consensus 636 ~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 636 GRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHH
Confidence 99999999999999984 789999999999999999999999999999988 788 667888888999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhhc-----------CCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChh
Q 001637 945 RELLKEMQARGRNPNSSTYDILIGGWCEL-----------SNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCES 1008 (1039)
Q Consensus 945 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 1008 (1039)
.++.+.|.++|+++++ +++|.+. ..||..+.| ++...++.++|++.|+.||..
T Consensus 711 ~~vr~~M~~~g~~k~~------g~s~ie~~~~~~~f~~~d~~h~~~~~i-----~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 711 ARVRKTMRENGLTVDP------GCSWVEVKGKVHAFLTDDESHPQIKEI-----NTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHHHHHHHcCCCCCC------CccEEEECCEEEEEecCCCCCcchHHH-----HHHHHHHHHHHHhCCcCCCcc
Confidence 9999999999999998 4445433 357777777 466778999999999999975
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4e-83 Score=773.55 Aligned_cols=677 Identities=18% Similarity=0.291 Sum_probs=490.8
Q ss_pred CcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 001637 202 SVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTL 281 (1039)
Q Consensus 202 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 281 (1039)
.++..+++.++.+|++.|++++|..+|+.|...|..|+..+|+.++..+.+.+.++.|..++..+.+.|..++...+|++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45555566666666666666666666666666555566666666666666666666666666666666555666666666
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001637 282 ISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYG 361 (1039)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 361 (1039)
+++|++.|+++.|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|...|
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~-------------------------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE-------------------------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC-------------------------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 6666666666666666666643 555666666666666666666666666666666
Q ss_pred CCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 001637 362 FLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTT 441 (1039)
Q Consensus 362 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 441 (1039)
+.||.+||++++.+|++.++++.+.+++..|.+.|+.||..++++||.+|++.|++++|..+|++|.. ||.++||+
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~ 258 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNA 258 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHH
Confidence 66666666666666666666666666666666666666666666666666666666666666655542 35555555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCC
Q 001637 442 LMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGM 521 (1039)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 521 (1039)
+|.+|++.|++++|.++|.+|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 522 LDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVD 601 (1039)
Q Consensus 522 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 601 (1039)
+++|.++|++|.. ||..+|++++.+|++.|++++|.++|++|
T Consensus 339 ~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M---------------------------------- 380 (857)
T PLN03077 339 WGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALM---------------------------------- 380 (857)
T ss_pred HHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHH----------------------------------
Confidence 5555555555432 34444444444444444443333333333
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCHh
Q 001637 602 MMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKCEVQSVYSGMKEMGLTPDLA 681 (1039)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~a~~~~~~~~~~~~~p~~~ 681 (1039)
.+.|+.||..+|+.++.+|++.|++++|.++++.+ .+.|+.|+..
T Consensus 381 -~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~----------------------------------~~~g~~~~~~ 425 (857)
T PLN03077 381 -EQDNVSPDEITIASVLSACACLGDLDVGVKLHELA----------------------------------ERKGLISYVV 425 (857)
T ss_pred -HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH----------------------------------HHhCCCcchH
Confidence 22334455555555555555555555555555554 4555677888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhh
Q 001637 682 TYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSS 761 (1039)
Q Consensus 682 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 761 (1039)
+|+.|+++|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+++|++|.. ++.||..++..++.+|.
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 888888888888999999999988863 5788899999999999999999999999875 68899999999999999
Q ss_pred ccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001637 762 KSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALA 841 (1039)
Q Consensus 762 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 841 (1039)
+.|+.+.+.+++..+++.|+.+|..++++|+++|+++|++++|.++|+.+ .||.++||++|.+|++.|+.++|++
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 4799999999999999999999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 001637 842 TYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMK-KRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKG 920 (1039)
Q Consensus 842 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 920 (1039)
+|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--- 652 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--- 652 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---
Confidence 99999999999999999999999999999999999999999 68999999999999999999999999999999984
Q ss_pred CccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHH
Q 001637 921 YVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN-SSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMN 999 (1039)
Q Consensus 921 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 999 (1039)
++||..+|++|+.+|..+|+.+.|....+++.+ +.|+ ...|..|...|+..|+ +++|.++.+.|+
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~------------~~~a~~vr~~M~ 718 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGK------------WDEVARVRKTMR 718 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCC------------hHHHHHHHHHHH
Confidence 789999999999999999999999999999999 8885 5566666678877665 689999999999
Q ss_pred hCCCCCCh
Q 001637 1000 EKGFVPCE 1007 (1039)
Q Consensus 1000 ~~~~~p~~ 1007 (1039)
+.|+.+++
T Consensus 719 ~~g~~k~~ 726 (857)
T PLN03077 719 ENGLTVDP 726 (857)
T ss_pred HcCCCCCC
Confidence 99887654
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-69 Score=634.17 Aligned_cols=549 Identities=19% Similarity=0.244 Sum_probs=463.1
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCcccHHHHH
Q 001637 99 IIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGV-LPNVFTINVLVHSFCKVGNLSFALDFLRNVDIDVDNVTYNTVI 177 (1039)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li 177 (1039)
..++...|..++..|.+.|++++|+++|++|.+.|+ +++..+++.++.+|++.|.+++|+.+|+.+.. ||..+|+.++
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL 444 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLM 444 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 346677888999999999999999999999999885 57788889999999999999999999999864 9999999999
Q ss_pred HHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 001637 178 WGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLS 257 (1039)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 257 (1039)
.+|++.|+++.|.++|++|.+.|+.||..+|++|+.+|++.|+++.|.++|++|.+.|+.||+++||+||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHH
Q 001637 258 SALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTL 337 (1039)
Q Consensus 258 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 337 (1039)
+|.++|++|.+.|+.||.++|+.+|.+|++.|++++|.++|++|.... .++.||.++|++|
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~-------------------~gi~PD~vTynaL 585 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET-------------------HPIDPDHITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-------------------CCCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999997521 3578999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001637 338 ISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCA 417 (1039)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 417 (1039)
|.+|++.|++++|+++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001637 418 MEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEM 497 (1039)
Q Consensus 418 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 497 (1039)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 001637 498 EEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNY 577 (1039)
Q Consensus 498 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 577 (1039)
.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ +++++.++.+.+....
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~------ 817 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFD------ 817 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhh------
Confidence 99999999999999999999999999999999999999999999999999876542 4555555443332210
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001637 578 ILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLL 657 (1039)
Q Consensus 578 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 657 (1039)
.+...+.. +..+.|..+|++|.+.|+.||..+|+.++.+++
T Consensus 818 ---------------------------~g~~~~~n------------~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 818 ---------------------------SGRPQIEN------------KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred ---------------------------cccccccc------------chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Confidence 00001111 112335555555555555555555555554444
Q ss_pred hcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001637 658 RHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSV 716 (1039)
Q Consensus 658 ~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 716 (1039)
..+.. .+..+++.|...+..|+..+|+++++++.+. .++|..+|++|.+.|+.|+..
T Consensus 859 ~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 859 LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 44444 4455555555555566666777777766321 356777777777777777654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-68 Score=624.23 Aligned_cols=546 Identities=19% Similarity=0.257 Sum_probs=476.4
Q ss_pred CCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCC-CcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHH
Q 001637 167 DVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGI-SVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNI 245 (1039)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (1039)
.++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++..|++.|.+++|..+|+.|. .||..+||.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHH
Confidence 55667788888888888999999999999988885 4577778888888999999999999888874 388999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCc
Q 001637 246 LIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNV 325 (1039)
Q Consensus 246 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (1039)
+|.+|++.|++++|+++|++|.+.|+.||.++|+.+|.+|++.|++++|.++|++|.+ .
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~---------------------~ 501 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN---------------------A 501 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---------------------c
Confidence 9999999999999999999999999999999999999999999999999999999987 6
Q ss_pred ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh--CCCCCCHHH
Q 001637 326 EVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEK--MGVDPNHVS 403 (1039)
Q Consensus 326 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~ 403 (1039)
|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||.++|+.+|.+|++.|++++|.++|++|.+ .|+.||..+
T Consensus 502 Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 778899999999999999999999999999999999999999999999999999999999999999976 578899999
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHh
Q 001637 404 YTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCK 483 (1039)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 483 (1039)
|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001637 484 LGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDL 563 (1039)
Q Consensus 484 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 563 (1039)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001637 564 YNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIP 643 (1039)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 643 (1039)
|++|...|+.||..+|..++.+|++.|++++|.+++..|.+.|+.||..+|++++..|. +++++|..+.+.+..-+
T Consensus 742 f~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~-- 817 (1060)
T PLN03218 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD-- 817 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--
Confidence 99999889999999999999999999999999999999999999999999999987654 24666665544443211
Q ss_pred CCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001637 644 FDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLV 722 (1039)
Q Consensus 644 ~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 722 (1039)
. .......+.. +|..+|++|++.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++++
T Consensus 818 -------~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li 889 (1060)
T PLN03218 818 -------S-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889 (1060)
T ss_pred -------c-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH
Confidence 0 0111112222 699999999999999999999999988889999999999999998888889999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChH
Q 001637 723 GGLVGFGEIEKAMDVLNDMLVWGFSPTST 751 (1039)
Q Consensus 723 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 751 (1039)
+++.+. .++|+.++++|...|+.|+..
T Consensus 890 ~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 890 DGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 998543 468999999999999999875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.6e-63 Score=583.07 Aligned_cols=470 Identities=21% Similarity=0.336 Sum_probs=446.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 001637 69 YFFCTLIQLYLTCGRFAKASDTFFTMRNFN-IIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHS 147 (1039)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 147 (1039)
..++.+|..|.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.+.++.|.+++..|.+.|+.||.+++|.|+++
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 358999999999999999999999998754 6789999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHhCCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHH
Q 001637 148 FCKVGNLSFALDFLRNVDIDVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWV 227 (1039)
Q Consensus 148 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (1039)
|++.|++++|+++|+++. .||.++||++|.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|..+.+.++
T Consensus 168 y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred HhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 999999999999999996 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccC
Q 001637 228 MDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKE 307 (1039)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 307 (1039)
+..+.+.|..+|+.+||+||++|+++|++++|.++|++|. .+|+++||++|.+|++.|+.++|.++|++|.+
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~---- 318 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD---- 318 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999996 46999999999999999999999999999988
Q ss_pred CcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHH
Q 001637 308 RDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKM 387 (1039)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (1039)
.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.+
T Consensus 319 -----------------~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 319 -----------------SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred -----------------cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-CC
Q 001637 388 LFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILK-HN 466 (1039)
Q Consensus 388 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 466 (1039)
+|++|.+ ||..+||+||.+|++.|+.++|+++|++|...|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999964 799999999999999999999999999999999999999999999999999999999999999986 58
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 001637 467 LVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMP-NVFIFA 545 (1039)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 545 (1039)
+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|.
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~ 532 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYV 532 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchH
Confidence 9999999999999999999999999998876 56789999999999999999999999999998764 34 467899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001637 546 ALIDGYFKAGKQEVAFDLYNDLKLVGME 573 (1039)
Q Consensus 546 ~li~~~~~~g~~~~a~~~~~~~~~~~~~ 573 (1039)
.|++.|++.|++++|.++++.|.+.|+.
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999888764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-60 Score=562.43 Aligned_cols=515 Identities=21% Similarity=0.292 Sum_probs=432.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHH
Q 001637 398 DPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRG-VAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSS 476 (1039)
Q Consensus 398 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 476 (1039)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4466788888888888888888888888887764 678888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001637 477 LIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGK 556 (1039)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 556 (1039)
|+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 88888888888888888888853 58888888888888888888888888888888888888888888888777776
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 557 QEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQE 636 (1039)
Q Consensus 557 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 636 (1039)
.+.+.+++..+. +.|+.||..+|++|+.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~-----------------------------------~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 240 ARAGQQLHCCVL-----------------------------------KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHH-----------------------------------HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 666665555444 455667777777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001637 637 MTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNS 715 (1039)
Q Consensus 637 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 715 (1039)
|.+ +|..+|+.++.+|++.|+. +|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||.
T Consensus 285 m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 285 MPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred CCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 743 3666777777777777776 67777777777777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 001637 716 VTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITIL 795 (1039)
Q Consensus 716 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 795 (1039)
.+|+.++++|++.|++++|.++|++|. .+|..+||+||.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~---------------------------------------~~d~~t~n~lI~~y 401 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP---------------------------------------RKNLISWNALIAGY 401 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------------CCCeeeHHHHHHHH
Confidence 888888888888888888888888873 46778999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCChhHHHHHHHHHHcCCChHHH
Q 001637 796 CRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMIN-EGVSPNTATYNILLGIFLGTGSTKEV 874 (1039)
Q Consensus 796 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A 874 (1039)
++.|+.++|.++|++|.+.|+.||.+||++++.+|.+.|.+++|.++|++|.+ .|+.|+..+|+++++++++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999986 59999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 875 DDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 875 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
.+++++| +..|+..+|++++.+|+..|+++.|..+++++.+ +.| +..+|+.|++.|++.|+|++|.+++++|.+
T Consensus 482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 482 YAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9998876 5889999999999999999999999999999986 677 578999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhhc-----------CCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhH
Q 001637 954 RGRNPNSSTYDILIGGWCEL-----------SNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQ 1010 (1039)
Q Consensus 954 ~g~~p~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 1010 (1039)
+|+.+.+ +++|.+. ..||..+.+ ++...++..+|.+.|+.|+....
T Consensus 557 ~g~~k~~------g~s~i~~~~~~~~f~~~d~~h~~~~~i-----~~~l~~l~~~~~~~gy~~~~~~~ 613 (697)
T PLN03081 557 KGLSMHP------ACTWIEVKKQDHSFFSGDRLHPQSREI-----YQKLDELMKEISEYGYVAEENEL 613 (697)
T ss_pred cCCccCC------CeeEEEECCeEEEEccCCCCCccHHHH-----HHHHHHHHHHHHHcCCCCCcchh
Confidence 9998765 3344333 246766665 56788999999999999997643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.5e-51 Score=510.45 Aligned_cols=868 Identities=14% Similarity=0.090 Sum_probs=610.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 001637 73 TLIQLYLTCGRFAKASDTFFTMRNFNIIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHSFCKVG 152 (1039)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 152 (1039)
...+.+...|++++|+..|.+..+.++ .+...|..+...+.+.|++++|...+.++.+.+. ++......+..++...|
T Consensus 27 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~g 104 (899)
T TIGR02917 27 EAAKSYLQKNKYKAAIIQLKNALQKDP-NDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLARAYLLQG 104 (899)
T ss_pred HHHHHHHHcCChHhHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChhhhHHHHHHHHHHCC
Confidence 356778889999999999999998765 4667788888999999999999999999988764 44556677788899999
Q ss_pred ChHHHHHHHHhCC---CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHH
Q 001637 153 NLSFALDFLRNVD---IDVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMD 229 (1039)
Q Consensus 153 ~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 229 (1039)
++++|...+.+.. .+.....+..+...+...|++++|...|.++++.+ +.+..++..+...+...|++++|..+++
T Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred CHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999887653 12233456666677778888888888888887665 3355667777777778888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCc
Q 001637 230 NLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERD 309 (1039)
Q Consensus 230 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 309 (1039)
.+++..+ .+...|..+...+...|++++|...|++..+.++ .+..++..++..+...|++++|...++.+.+..+
T Consensus 184 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--- 258 (899)
T TIGR02917 184 EVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAP--- 258 (899)
T ss_pred HHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Confidence 7776543 5667777777788888888888888887776532 3555677777777778888888888877766211
Q ss_pred ccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHH
Q 001637 310 ADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLF 389 (1039)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 389 (1039)
.+...+......+.+.|++++|...|+.+.+.+.. +...+..+...+.+.|++++|...|
T Consensus 259 -------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~ 318 (899)
T TIGR02917 259 -------------------NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYL 318 (899)
T ss_pred -------------------CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHH
Confidence 12222333334455677778888777777765422 2334444555667777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcc
Q 001637 390 REMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVS 469 (1039)
Q Consensus 390 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (1039)
+.+.+... .+...+..+...+.+.|++++|...++.+...... +...+..+...+.+.|++++|.++|+.+.+.. +.
T Consensus 319 ~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 395 (899)
T TIGR02917 319 NQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PE 395 (899)
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 77766532 24556666677777777777777777777665433 56667777777777777777777777766653 33
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001637 470 NHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALID 549 (1039)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 549 (1039)
+...+..+...+...|++++|.+.++.+.+..+. .......++..+.+.|++++|..+++++... .+++..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHH
Confidence 4556666666777777777777777776665433 3344555666667777777777777776654 3345566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH
Q 001637 550 GYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETA 629 (1039)
Q Consensus 550 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 629 (1039)
.|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-------------------------- 526 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL-------------------------- 526 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------------------
Confidence 6666677666666666665432 2222333334444444455555555554444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 630 ALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRR 708 (1039)
Q Consensus 630 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 708 (1039)
+.+ |.+..++..+...+...|+. ++...++++...+ ..+...+..++..|...|++++|+.+++.+.+
T Consensus 527 ---------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 527 ---------TID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred ---------HhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 432 33444444444444444444 4444444444431 11244455555666666666666666666654
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHH
Q 001637 709 NGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYY 788 (1039)
Q Consensus 709 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 788 (1039)
.. +.+...|..++.++...|++++|...++++.+.. +.+...+..+...+...|+.++|...++++++.. +.+...+
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 32 2345556666666666666666666666665321 1233345555555666666666666666666542 3467788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcC
Q 001637 789 NSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGT 868 (1039)
Q Consensus 789 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 868 (1039)
..++.++...|++++|..+++.+.+.. +++...+..++..+...|++++|++.|+++.. ..|+..++..++.++...
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHC
Confidence 999999999999999999999998874 55788899999999999999999999999998 567767888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHH
Q 001637 869 GSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELL 948 (1039)
Q Consensus 869 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 948 (1039)
|++++|.+.++++.+.. +.+...+..++..|.+.|++++|.+.|+++++. .++++.+++.++..|...|+ .+|++++
T Consensus 750 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 99999999999998753 456778888999999999999999999999984 23478899999999999999 8899999
Q ss_pred HHHHHCCCCC-ChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhCCCChHHHH
Q 001637 949 KEMQARGRNP-NSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSSTFARPGKKADAQ 1027 (1039)
Q Consensus 949 ~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~l~~~G~~~eA~ 1027 (1039)
+++.+ ..| ++.++..++..+...|+ +++|.++++++.+.+. .+..++.++++++.+.|+.++|+
T Consensus 827 ~~~~~--~~~~~~~~~~~~~~~~~~~g~------------~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 827 EKALK--LAPNIPAILDTLGWLLVEKGE------------ADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HHHHh--hCCCCcHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHH
Confidence 99999 667 56677777777766554 6899999999998763 37779999999999999999999
Q ss_pred HHHHHHhh
Q 001637 1028 RLLQEFYK 1035 (1039)
Q Consensus 1028 ~~~~~~~~ 1035 (1039)
++++++++
T Consensus 892 ~~~~~~~~ 899 (899)
T TIGR02917 892 KELDKLLN 899 (899)
T ss_pred HHHHHHhC
Confidence 99998763
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-47 Score=480.84 Aligned_cols=835 Identities=14% Similarity=0.092 Sum_probs=702.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 001637 69 YFFCTLIQLYLTCGRFAKASDTFFTMRNFNIIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHSF 148 (1039)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 148 (1039)
..+..+...|.+.|++++|...|.++.+.++ ++...+..+...+...|++++|...+.+......+.....+..+...+
T Consensus 57 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (899)
T TIGR02917 57 EARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAY 135 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHH
Confidence 3466788899999999999999999999877 445566777889999999999999998775444445567888888999
Q ss_pred HhcCChHHHHHHHHhC-CC-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHH
Q 001637 149 CKVGNLSFALDFLRNV-DI-DVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEW 226 (1039)
Q Consensus 149 ~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 226 (1039)
.+.|++++|...|++. .. +.+..+|..+...+...|++++|..++.++++.. +.+...+..+...+...|+++.|..
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 214 (899)
T TIGR02917 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALA 214 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999875 22 3445678888889999999999999999998765 5577888899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhccc
Q 001637 227 VMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQK 306 (1039)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 306 (1039)
.|..++...+ .+..++..++..+...|++++|...++.+.+.... +...+......+...|++++|...|+++++.
T Consensus 215 ~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-- 290 (899)
T TIGR02917 215 AYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKS-- 290 (899)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 9999988765 67888999999999999999999999999986433 3334444555667889999999999999872
Q ss_pred CCcccccccccccccCCCcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhH
Q 001637 307 ERDADTSKADNFENENGNVEVEPN-LITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEA 385 (1039)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 385 (1039)
.|+ ...+..+...+.+.|++++|...|+.+.+... .+...+..+...+.+.|++++|
T Consensus 291 ---------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 291 ---------------------APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred ---------------------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHH
Confidence 233 23444556678899999999999999988643 3567788889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 001637 386 KMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKH 465 (1039)
Q Consensus 386 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (1039)
...+..+.+... .+...+..+...+.+.|++++|.+.|+++....+. +...+..+...+...|++++|.+.|..+.+.
T Consensus 349 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 349 IATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 999999987643 36788999999999999999999999999887554 7778889999999999999999999999887
Q ss_pred CCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001637 466 NLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFA 545 (1039)
Q Consensus 466 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 545 (1039)
. +........++..+.+.|++++|.++++.+....+ ++..+|..+...+...|++++|.+.|+++.+.. +.+...+.
T Consensus 427 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 427 D-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred C-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 5 23345667788899999999999999999988644 378899999999999999999999999998763 44567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 001637 546 ALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVG 625 (1039)
Q Consensus 546 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 625 (1039)
.+...+...|++++|.+.++++.... +.+...+..+...+.+.|+.++|...+.++.+.. +.+...+..++..|...|
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC
Confidence 88999999999999999999998764 4466788888999999999999999999998753 345567888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHH
Q 001637 626 KETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTP-DLATYNIMISASCKQGNLEIAFKLW 703 (1039)
Q Consensus 626 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 703 (1039)
++++|..+++++.+.. |.+...|..++..+...|+. +|...++++.+. .| +...+..++..+.+.|++++|...|
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998764 77889999999999999999 999999999886 34 4778889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCc
Q 001637 704 DEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRL 783 (1039)
Q Consensus 704 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 783 (1039)
+++.+.. +.+..++..++..+...|++++|..+++.+.... .++...+..+...+...|++++|...+..++..+ |
T Consensus 659 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~ 734 (899)
T TIGR02917 659 KRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--P 734 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--C
Confidence 9998753 3357889999999999999999999999998653 3455667777788888999999999999988864 4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHH
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILL 862 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 862 (1039)
+..++..++.+|.+.|++++|.+.++++.+. .+.+...++.++..|...|++++|++.|+++++. .| +..++..++
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~ 811 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLA 811 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4466777888999999999999999998876 3457788888888899999999999999999884 44 577888888
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCH
Q 001637 863 GIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKM 941 (1039)
Q Consensus 863 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 941 (1039)
.++...|+ ++|+..++++.+.. +.+...+..++..+...|++++|.+.++++++. .| ++.++..++..|.+.|++
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCH
Confidence 89999998 88999999988742 234456677888888999999999999999884 34 788888899999999999
Q ss_pred HHHHHHHHHHH
Q 001637 942 HQARELLKEMQ 952 (1039)
Q Consensus 942 ~~A~~~~~~~~ 952 (1039)
++|++++++|+
T Consensus 888 ~~A~~~~~~~~ 898 (899)
T TIGR02917 888 AEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHh
Confidence 99999999886
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.2e-27 Score=294.41 Aligned_cols=650 Identities=12% Similarity=0.034 Sum_probs=435.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH----------
Q 001637 335 TTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSY---------- 404 (1039)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---------- 404 (1039)
-..+..+-..++.+.|.+.++++...... |..++..++..+.+.|+.++|.+.+++..+..+. +...+
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcC
Confidence 34456677889999999999999876432 5777888888999999999999999999886432 22221
Q ss_pred ------HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHH
Q 001637 405 ------TTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLI 478 (1039)
Q Consensus 405 ------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 478 (1039)
..+...+.+.|++++|++.|+++......................|+.++|++.++.+.+.. +.+...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 22233456667777777777666654322111111111111223466666777776666653 33445566666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH
Q 001637 479 DGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNV-FIFAALIDGYFKAGKQ 557 (1039)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 557 (1039)
..+...|+.++|++.++++.+.... +. ..+...+..+...+..+.. ..+...+..+-.....
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~-~~----------------~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~ 251 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAG-RD----------------AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV 251 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCc-hH----------------HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH
Confidence 6666666767777766666543110 00 1111111111111111111 1111111111122223
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 558 EVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVP-DRVNYTSLMDGFFKVGKETAALNIAQE 636 (1039)
Q Consensus 558 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 636 (1039)
+.|...+.+.......|... .......+...|++++|+..+++.++. .| +...+..+...|.+.|++++|+..|++
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555544332223221 123355667788888999888888873 34 566788888888899999999999988
Q ss_pred HHHCCCCCCH--HHH------------HHHHHHHHhcCch-HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHH
Q 001637 637 MTEKNIPFDV--TAY------------NVLINGLLRHGKC-EVQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAF 700 (1039)
Q Consensus 637 ~~~~~~~~~~--~~~------------~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 700 (1039)
..+.. |.+. ..| ......+...|+. +|...|+++++. .|+ ...+..+...+...|++++|+
T Consensus 329 Al~~~-p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 329 ALALD-PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred HHHhC-CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88764 2221 112 1224456778888 899999998886 454 667778888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--------ChHhHHHHHHHhhccCChhHHHHH
Q 001637 701 KLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSP--------TSTTIKILLDTSSKSRRGDVILQM 772 (1039)
Q Consensus 701 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~ 772 (1039)
+.|+++.+.. +.+...+..+...|. .++.++|..+++.+....... ....+......+...|+.++|+..
T Consensus 406 ~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~ 483 (1157)
T PRK11447 406 RYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL 483 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999988742 224556666666664 457888988887653221000 012334456677888999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 001637 773 HERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVS 852 (1039)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 852 (1039)
++++++.. +.+..++..+..+|.+.|++++|+..++++.+.. +.++..+..+...+...++.++|+..++++......
T Consensus 484 ~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~ 561 (1157)
T PRK11447 484 QRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWN 561 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcC
Confidence 99999863 3367788889999999999999999999998752 335666666666677889999999999886543222
Q ss_pred CChh---------HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc
Q 001637 853 PNTA---------TYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP 923 (1039)
Q Consensus 853 p~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 923 (1039)
++.. .+..+...+...|+.++|.++++. .+++...+..+...+.+.|++++|++.|+++++ ..|
T Consensus 562 ~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P 634 (1157)
T PRK11447 562 SNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REP 634 (1157)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 2221 223456788999999999999872 345556677889999999999999999999998 567
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhC
Q 001637 924 -KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN-SSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEK 1001 (1039)
Q Consensus 924 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 1001 (1039)
++..+..++..|...|++++|++.++++.+ ..|+ ..+...++..+...| .+++|.++++++.+.
T Consensus 635 ~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g------------~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 635 GNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALG------------DTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCC------------CHHHHHHHHHHHhhh
Confidence 678999999999999999999999999988 6674 445556666665544 478999999999764
Q ss_pred CC--CC---ChhhHHHHHHHhhCCCChHHHHHHHHHHhh
Q 001637 1002 GF--VP---CESTQTCFSSTFARPGKKADAQRLLQEFYK 1035 (1039)
Q Consensus 1002 ~~--~p---~~~~~~~l~~~l~~~G~~~eA~~~~~~~~~ 1035 (1039)
.. .| +...+..+++++...|+.++|++.+++.+.
T Consensus 701 ~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 701 AKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 21 12 123566789999999999999999997653
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.2e-27 Score=289.37 Aligned_cols=666 Identities=12% Similarity=0.041 Sum_probs=332.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCC-CCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhc
Q 001637 141 INVLVHSFCKVGNLSFALDFLRNV-DID-VDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRI 218 (1039)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 218 (1039)
+-..++.+...++.+.|.+.+.+. .+. .|+..+..++..+.+.|+.++|.+.+++..+.. +.+..... +.
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~-~~------ 102 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRS-SR------ 102 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHH-HH------
Confidence 333455666677777777766553 222 344456666666667777777777777776654 11221110 00
Q ss_pred CchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCHHHHHHH
Q 001637 219 GMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIV-SYNTLISGFCKRGDFVKAKSL 297 (1039)
Q Consensus 219 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~li~~~~~~g~~~~A~~~ 297 (1039)
..+.. ..++......+...+.+.|++++|+..|+++.+.+. |+.. ...-+.......|+.++|+..
T Consensus 103 -----------~~~~~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~ 169 (1157)
T PRK11447 103 -----------TTMLL-STPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQ 169 (1157)
T ss_pred -----------HHHHh-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHH
Confidence 00000 001111123333445555555555555555554321 1111 000011111223555555555
Q ss_pred HHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------
Q 001637 298 IDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYG---------------- 361 (1039)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---------------- 361 (1039)
++++++..| .+...+..+...+.+.|+.++|+..++++.+..
T Consensus 170 L~~ll~~~P----------------------~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 170 LQRLNADYP----------------------GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHhCC----------------------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 555554111 123334444555555555555555555554321
Q ss_pred --CCCC-HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHH
Q 001637 362 --FLPD-VVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVV 438 (1039)
Q Consensus 362 --~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 438 (1039)
..++ ...+...+..+-.....+.|...+..+......|+... ......+...|++++|+..|++.++..+. +..+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a 305 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEA 305 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 0100 11111111111112223334444444333222222211 12234445556666666666655554333 4555
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCcc-cHHHH------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 001637 439 YTTLMDGLFKAGRPSEAEDTFNLILKHNLVS-NHVTY------------SSLIDGCCKLGDMSAAESILQEMEEKHVVPN 505 (1039)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 505 (1039)
+..+...+.+.|++++|+..|++.++..... ....| ......+.+.|++++|+..|+++.+..+. +
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-D 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 5555556666666666666665555432111 10111 11123344455555555555555554332 3
Q ss_pred HHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 001637 506 VITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNY 585 (1039)
Q Consensus 506 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (1039)
...+..+...+...|++++|++.|+++.+.. +.+...+..+...|. .++.++|...++.+...... .
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~----~------- 451 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRR----S------- 451 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH----H-------
Confidence 4444445555555555555555555555431 122333333333332 23444444444332110000 0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HH
Q 001637 586 LKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EV 664 (1039)
Q Consensus 586 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a 664 (1039)
. ..... .+ ....+..+...+...|++++|+..+++..+.. |.+...+..+...|...|+. +|
T Consensus 452 ----------~---~~~~~-~l--~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 452 ----------I---DDIER-SL--QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred ----------H---HHHHH-Hh--hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 0 00000 00 01234445566667777777777777777654 44555666666666666666 66
Q ss_pred HHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 001637 665 QSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLV 743 (1039)
Q Consensus 665 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 743 (1039)
...++++.+. .|+ ...+..+...+...++.++|+..++.+......++...... .+
T Consensus 515 ~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~-------------------~l-- 571 (1157)
T PRK11447 515 DALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ-------------------RL-- 571 (1157)
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH-------------------HH--
Confidence 6666666553 332 33444444455566677777666665432211111100000 00
Q ss_pred CCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 001637 744 WGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITY 823 (1039)
Q Consensus 744 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 823 (1039)
....+......+...|+.++|..+++. .+.+...+..+..+|.+.|++++|++.|+++.+. .+.++..+
T Consensus 572 -----~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~ 640 (1157)
T PRK11447 572 -----QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADAR 640 (1157)
T ss_pred -----hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 000111223344555666666555541 1345556677888888888888888888888876 23357788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CC---CHHHHHHHH
Q 001637 824 NALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGL--KP---DASTYDTLI 897 (1039)
Q Consensus 824 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~ 897 (1039)
..++..+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.++++++++... +| +...+..+.
T Consensus 641 ~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 641 LGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 8888888888888888888887776 4554 45566677788888888888888888875321 12 224555567
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 001637 898 SGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 898 ~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
..+...|+.++|++.|++++.
T Consensus 719 ~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 719 RFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 777888888888888888763
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.6e-24 Score=252.76 Aligned_cols=632 Identities=13% Similarity=0.067 Sum_probs=300.0
Q ss_pred cCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 001637 218 IGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSL 297 (1039)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 297 (1039)
.|++++|...|..+++..|. +..++..|...|.+.|+.++|+..+++..+. .|+-..+..++..+ +++++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 37777777777777776553 3666777777777777777777777777764 33333232222222 667777777
Q ss_pred HHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 001637 298 IDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISA--------YCKQQALEEALGLYEEMVKYGFLPDVVTY 369 (1039)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 369 (1039)
++++....| .+..++..+... |.+. ++|.+.++ .......|+..+.
T Consensus 131 ye~l~~~~P----------------------~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL 184 (987)
T PRK09782 131 VEELLAQQK----------------------ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTL 184 (987)
T ss_pred HHHHHHhCC----------------------CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHH
Confidence 777766222 122233333332 4444 34444443 2222233334333
Q ss_pred HHH-HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001637 370 SSI-MGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFK-AGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLF 447 (1039)
Q Consensus 370 ~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 447 (1039)
... ...|.+.|++++|++++.++.+.++. +..-...|..+|.+ .++ +++..+++...+ -+...+..+...|.
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk----~d~~l~~ala~~yi 258 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF----TDPQSRITYATALA 258 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc----cCHHHHHHHHHHHH
Confidence 333 66777777777777777777766533 34445555556665 255 555555443222 36666666777777
Q ss_pred HcCChhHHHHHHHHHHHCCCc-ccHHHHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCC-HHhHHHHHHHHHHcCCHHH
Q 001637 448 KAGRPSEAEDTFNLILKHNLV-SNHVTYSSLIDGCCKLGDMS-AAESILQEMEEKHVVPN-VITYSSIINGYVKKGMLDE 524 (1039)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 524 (1039)
+.|+.++|.+++..+...... |...+|.-+ +.+.+... .|..-|.. + ..++ ....-.++..+.+.+.++-
T Consensus 259 ~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 259 YRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHH
Confidence 777777777666665433211 333333332 23333221 11111111 0 0001 1112233555666666664
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001637 525 AANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMS 604 (1039)
Q Consensus 525 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 604 (1039)
+.++.. ..|.......-..+....+...++...+..|.+.. +.+............+.|+.++|..++.....
T Consensus 332 ~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 332 AQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred HHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 444321 22222221111111112344555555555544321 22333344444444555666666666655544
Q ss_pred c-C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-H---HHHHHHHHHhcCCCC
Q 001637 605 R-G-LVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-E---VQSVYSGMKEMGLTP 678 (1039)
Q Consensus 605 ~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~---a~~~~~~~~~~~~~p 678 (1039)
. + -.++......++..|.+.+.+....++..-.. +.+...- +.-.|.. + +...+..+.... .+
T Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~-p~ 473 (987)
T PRK09782 405 FQGDARLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDM-SP 473 (987)
T ss_pred CCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchh------HHHHhhhhhhhhhHHHHHHhcccC-CC
Confidence 1 0 11122333355555555554222222211110 0111100 0011111 1 112222222110 11
Q ss_pred --CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 001637 679 --DLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKIL 756 (1039)
Q Consensus 679 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 756 (1039)
+...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++++.
T Consensus 474 ~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~-------------- 536 (987)
T PRK09782 474 SYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS-------------- 536 (987)
T ss_pred CCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh--------------
Confidence 23444444444444 4555555555544442 2333222222333345555555555555543
Q ss_pred HHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 001637 757 LDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHI 836 (1039)
Q Consensus 757 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 836 (1039)
.. +|+...+..++.++.+.|+.++|...+++..+.. +.+...+..+.......|++
T Consensus 537 ---------------------~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 537 ---------------------LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred ---------------------cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCH
Confidence 21 2223334445555566666666666666655542 11222222222233334666
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001637 837 NKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEM 916 (1039)
Q Consensus 837 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 916 (1039)
++|+..|++.++ +.|+...+..+..++.+.|++++|+..++++++.. +.+...+..+...+...|++++|++.++++
T Consensus 593 ~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666665 44555555566666666666666666666666531 223344455555566666666666666666
Q ss_pred HHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 917 ITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 917 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
++ ..| ++..+..+..+|...|++++|+..++++++ +.|+.
T Consensus 670 L~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 670 HK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 65 445 455566666666666666666666666666 55543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=5.4e-24 Score=250.19 Aligned_cols=678 Identities=12% Similarity=0.021 Sum_probs=434.0
Q ss_pred HHHHHHHH--HhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001637 173 YNTVIWGL--CEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGY 250 (1039)
Q Consensus 173 ~~~li~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 250 (1039)
+-.+..+. ...|++++|+..|+++++.. +.+..++..|...|.+.|+.++|+...+++++..+ .|...+..+. .+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La-~i 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLA-AI 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHH-Hh
Confidence 33344443 34599999999999999887 33588899999999999999999999999999755 5555555552 22
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHH-----HccCCHHHHHHHHHHHHhcccCCcccccccccccccCCC
Q 001637 251 CKSGDLSSALKLMEGMRREGVIPDIV-SYNTLISGF-----CKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGN 324 (1039)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~li~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1039)
+++++|..+|+++.+. .|+.. ++..+.... ..-.+.++|.+.++ ...
T Consensus 122 ---~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~--------------------- 174 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DAT--------------------- 174 (987)
T ss_pred ---ccChhHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-Hhh---------------------
Confidence 9999999999999996 34433 343333331 34568889998887 322
Q ss_pred cccCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-cCChhhHHHHHHHHHhCCCCCCHH
Q 001637 325 VEVEPNLITHTTL-ISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCK-CGRLAEAKMLFREMEKMGVDPNHV 402 (1039)
Q Consensus 325 ~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~ 402 (1039)
....|+..+.... ...|.+.|++++|+.++.++.+.+.. +......|...|.+ .++ +++..+++.. +..|..
T Consensus 175 ~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~ 248 (987)
T PRK09782 175 FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQ 248 (987)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHH
Confidence 2233345544444 88999999999999999999998644 45557777778888 477 8888886642 335888
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChh-HHHHHHHHHHHCCCcccH-HHHHHHHH
Q 001637 403 SYTTLIDSLFKAGCAMEAFALQSQMMVRGVA-FDVVVYTTLMDGLFKAGRPS-EAEDTFNLILKHNLVSNH-VTYSSLID 479 (1039)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~-~~~~~li~ 479 (1039)
.+..+...|.+.|+.++|..+++++...-.. |+..+|--+ +.+.+... .|..-|.. ...++. .....++.
T Consensus 249 l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 249 SRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLP 321 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHH
Confidence 9999999999999999999999998765332 444444333 45555443 12222211 111111 12344578
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001637 480 GCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEV 559 (1039)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 559 (1039)
.+.+.++++.++++.. +.|.....-.-..+....+...++...+..|.+.. +-+....-.+.-...+.|+.++
T Consensus 322 ~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~ 394 (987)
T PRK09782 322 VLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSRE 394 (987)
T ss_pred HHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHH
Confidence 8899999997765522 22332222111112223467778888888887652 2255555555555678999999
Q ss_pred HHHHHHHHHHc-C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHH---HHHH
Q 001637 560 AFDLYNDLKLV-G-MEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAA---LNIA 634 (1039)
Q Consensus 560 a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~ 634 (1039)
|.++++..... + ...+......++..+.+.+.+.....+..-.. .++...- +.-.|+..++ ...+
T Consensus 395 a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 395 AADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchh------HHHHhhhhhhhhhHHHH
Confidence 99999998762 1 22345566688888888887443333222111 1111111 2223444343 3334
Q ss_pred HHHHHCCCCC--CHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001637 635 QEMTEKNIPF--DVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGI 711 (1039)
Q Consensus 635 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 711 (1039)
...... .|+ +...|..+..++.. +.. +|...+.+.... .|+......+...+...|++++|+..|+++...
T Consensus 465 ~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-- 538 (987)
T PRK09782 465 VRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-- 538 (987)
T ss_pred HHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 444332 255 78888999888877 666 899988888776 577555555566667999999999999998654
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHH
Q 001637 712 MPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSL 791 (1039)
Q Consensus 712 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 791 (1039)
.|+...+..+..++.+.|++++|..+++++++.. |+. ...+..+
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~----------------------------------~~l~~~L 582 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGD----------------------------------NALYWWL 582 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Ccc----------------------------------HHHHHHH
Confidence 4555567777888899999999999999987542 222 1112222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCC
Q 001637 792 ITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGS 870 (1039)
Q Consensus 792 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 870 (1039)
.......|++++|+..+++..+. .|+...|..+...+.+.|++++|+..|++.++ ..|+ ...++.+..++...|+
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCC
Confidence 22333446666666666666553 34555566666666666666666666666665 4454 4455555556666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 001637 871 TKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKT-STYNVLIGDFAKEGKMHQARELLK 949 (1039)
Q Consensus 871 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 949 (1039)
+++|++.++++++.. +-+...+..+..++...|++++|+..++++++ ..|+. .+.........+..+++.|.+-++
T Consensus 659 ~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 659 IAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 666666666666521 22344555566666666666666666666665 45532 444444455555556666666666
Q ss_pred HHHHCCCCCChh
Q 001637 950 EMQARGRNPNSS 961 (1039)
Q Consensus 950 ~~~~~g~~p~~~ 961 (1039)
+... +.|+.+
T Consensus 736 r~~~--~~~~~~ 745 (987)
T PRK09782 736 RRWT--FSFDSS 745 (987)
T ss_pred HHhh--cCccch
Confidence 6665 555554
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-22 Score=219.23 Aligned_cols=605 Identities=16% Similarity=0.144 Sum_probs=445.6
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 001637 382 LAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVR--GVAFDVVVYTTLMDGLFKAGRPSEAEDTF 459 (1039)
Q Consensus 382 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (1039)
++.|...|....+... +|+..+-.-.......|++..|+.+|...+.. ...||+. ..+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 5889999988887642 35544444445556778999999999997665 3344443 23445667899999999999
Q ss_pred HHHHHCCCcccHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 001637 460 NLILKHNLVSNHVTYSSLIDGCCKL---GDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQN 536 (1039)
Q Consensus 460 ~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 536 (1039)
.+..+.+ +-++.++..|...-... ..+..+...+......+.. +++..+.|.+.|...|++..+..+...+....
T Consensus 223 ~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 9998875 23333444443322222 3456677777777666544 78889999999999999999999999887642
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhH
Q 001637 537 IM--PNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNY 614 (1039)
Q Consensus 537 ~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 614 (1039)
.. .-...|-.+..+|...|++++|...|.+..+.........+-.+...+.+.|+++.+...|+...+. .+.+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHH
Confidence 11 1234588889999999999999999988876543333445566788899999999999999999884 23345577
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH----hcCCCCCHhHHHHH
Q 001637 615 TSLMDGFFKVG----KETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKCEVQSVYSGMK----EMGLTPDLATYNIM 686 (1039)
Q Consensus 615 ~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~a~~~~~~~~----~~~~~p~~~~~~~l 686 (1039)
..|...|...+ ..+.|..++.+..+.. |.|...|..+...+-....+..+..+..+. ..+-.+.+...|.+
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 77777777665 5678888888888764 788999999998888777774466665444 44555778899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---CCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH-hHHHH
Q 001637 687 ISASCKQGNLEIAFKLWDEMRRN---GIMPN------SVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTST-TIKIL 756 (1039)
Q Consensus 687 ~~~~~~~g~~~~A~~~~~~m~~~---~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l 756 (1039)
...+...|++.+|...|...... ...++ ..+-..+...+-..++.+.|.+.|..+++. .|.-. .+..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 99999999999999999988753 11222 234455677777889999999999999863 45443 44444
Q ss_pred HHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh---
Q 001637 757 LDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRG-IMMDTITYNALMRGYWV--- 832 (1039)
Q Consensus 757 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 832 (1039)
+......++..++...+..++..+ ..++.++..+++.|.+...|..|.+-|..+...- ..+|+.+.-+|++.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 434445577888888888887753 5678888888999999999999999888776552 23577777777775542
Q ss_pred ---------cCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 001637 833 ---------SSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAK 902 (1039)
Q Consensus 833 ---------~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 902 (1039)
.+..++|+++|.+.+. ..| |...-+.++-+++..|++.+|..+|.++.+... ....+|-.+.++|..
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE 692 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence 2568899999999998 566 577778888899999999999999999998532 344577789999999
Q ss_pred cCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hh-hHHHHHHHHhhc------
Q 001637 903 IGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN-SS-TYDILIGGWCEL------ 973 (1039)
Q Consensus 903 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~-~~~~l~~~~~~~------ 973 (1039)
+|++-.|+++|+...++-++- ++.+...|..++.+.|++.+|.+....+.. ..|. +. -||..+-. -+.
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~-kkla~s~lr 769 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVL-KKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHH-HHHHHHHHh
Confidence 999999999999998874433 678899999999999999999999999999 7773 32 33333221 111
Q ss_pred CCCchhhHH-HhHhHHHHHHHHHHHHHhCC
Q 001637 974 SNEPELDRT-LILSYRAEAKKLFMEMNEKG 1002 (1039)
Q Consensus 974 ~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~ 1002 (1039)
....-++++ ...+..++|.++|.++...+
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111122222 22356788999999997654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=5.7e-25 Score=225.48 Aligned_cols=349 Identities=18% Similarity=0.185 Sum_probs=239.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCC-HhHHHHHHHHH
Q 001637 613 NYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPD-LATYNIMISAS 690 (1039)
Q Consensus 613 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 690 (1039)
.|..+..++...|+.+.|...|.+..+.+ |........+.......|+. +|...+.+.++. .|. .++|..|...+
T Consensus 152 a~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f 228 (966)
T KOG4626|consen 152 AYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVF 228 (966)
T ss_pred HHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHH
Confidence 33334444444444444444444433332 21222222233333333444 444444444432 343 45555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-HhHHHHHHHhhccCChhH
Q 001637 691 CKQGNLEIAFKLWDEMRRNGIMPN-SVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTS-TTIKILLDTSSKSRRGDV 768 (1039)
Q Consensus 691 ~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 768 (1039)
..+|+...|+..|++..+. .|+ ...|..|...|...+.++.|+..|.++. ...|+. ..+..+...|.++|..+.
T Consensus 229 ~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl--~lrpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 229 NAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL--NLRPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred hhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH--hcCCcchhhccceEEEEeccccHHH
Confidence 6666666666666665542 444 4455556666666666666666665554 334432 344445555666666666
Q ss_pred HHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001637 769 ILQMHERLVDMGVRLN-QAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMI 847 (1039)
Q Consensus 769 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 847 (1039)
|+..|++.++. .|+ ...|+.|.+++...|++.+|+..+.+.... .+.-..+.+.|...|...|.+++|..+|.+.+
T Consensus 305 AI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 305 AIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 66666666664 453 568899999999999999999999998876 33347888999999999999999999999999
Q ss_pred HCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-C
Q 001637 848 NEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDA-STYDTLISGHAKIGNKKESIQIYCEMITKGYVP-K 924 (1039)
Q Consensus 848 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~ 924 (1039)
+ +.|. ....+.|...|-.+|++++|+..|+++++ +.|+. ..|+.++..|...|+++.|++.+.+++. +.| -
T Consensus 382 ~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~ 455 (966)
T KOG4626|consen 382 E--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTF 455 (966)
T ss_pred h--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHH
Confidence 8 8887 67788899999999999999999999987 67775 6788899999999999999999999998 777 4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCCCchh
Q 001637 925 TSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN-SSTYDILIGGWCELSNEPEL 979 (1039)
Q Consensus 925 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~~ 979 (1039)
...++.|...|...|+..+|+..+++.++ ++|| +..|..++.++.-.+++.+.
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccch
Confidence 57888999999999999999999999999 8997 55677777766555555543
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-20 Score=205.52 Aligned_cols=581 Identities=13% Similarity=0.084 Sum_probs=392.7
Q ss_pred HHHhcCC--hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcc
Q 001637 249 GYCKSGD--LSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVE 326 (1039)
Q Consensus 249 ~~~~~g~--~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1039)
.|...|. ++.|...|....+.. ++|+..+-.-.......|+|..|+.+|..++...| .
T Consensus 137 ~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp-------------------~ 196 (1018)
T KOG2002|consen 137 FLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINP-------------------A 196 (1018)
T ss_pred hhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCc-------------------c
Confidence 3344444 478888888888752 23443333333334456889999999999876432 2
Q ss_pred cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---cCChhhHHHHHHHHHhCCCCCCHHH
Q 001637 327 VEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCK---CGRLAEAKMLFREMEKMGVDPNHVS 403 (1039)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~ 403 (1039)
..||+.+ .+...+.+.|+.+.|+..|...++..+ .++.++..|...-.. ...+..|..++...-.... -|++.
T Consensus 197 ~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~ 272 (1018)
T KOG2002|consen 197 CKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVA 272 (1018)
T ss_pred cCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHH
Confidence 3344422 233456688999999999999888642 133333333322222 2345667777766655432 37778
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHH
Q 001637 404 YTTLIDSLFKAGCAMEAFALQSQMMVRGVA--FDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGC 481 (1039)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 481 (1039)
.+.|.+.|.-.|++..+..+...+...-.. .-...|--+..+|-..|++++|...|....+.....-...+-.+..+|
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 888899999999999999998888775311 123457788889999999999999998888765222244566788999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001637 482 CKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKG----MLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQ 557 (1039)
Q Consensus 482 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 557 (1039)
.+.|+++.+...|+.+.+..+. +..+...|...|...+ ..+.|..++.+..+. .+.|...|..+...+....-+
T Consensus 353 i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChH
Confidence 9999999999999999887544 6677777777777765 567888888888776 345777888887777654444
Q ss_pred HHHHHHHHHHH----HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCH------hhHHHHHHHHHhc
Q 001637 558 EVAFDLYNDLK----LVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSR---GLVPDR------VNYTSLMDGFFKV 624 (1039)
Q Consensus 558 ~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~ 624 (1039)
. ++..|..+. ..+..+.+.+.+.+.......|.+.+|...|...... ...+|. .+--.+...+-..
T Consensus 431 ~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 431 A-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred H-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 3 377766544 3555677888888888888888888888888887764 122222 1223345555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 001637 625 GKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLW 703 (1039)
Q Consensus 625 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 703 (1039)
++.+.|.+.|..+.+.. |.-+..|..++......+.. +|...+....... .-++..+..+.+.+.+...+..|.+-|
T Consensus 510 ~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f 587 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKF 587 (1018)
T ss_pred hhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHH
Confidence 77788888888877763 44455555555333333334 6776666666542 224555666666677777777777666
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCC
Q 001637 704 DEMRRNG-IMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVR 782 (1039)
Q Consensus 704 ~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 782 (1039)
....+.- ..+|..+...|...|.+ .+...--.| -...+..++|+++|.++++.. +
T Consensus 588 ~~i~~~~~~~~D~YsliaLGN~~~~------------~l~~~~rn~-----------ek~kk~~~KAlq~y~kvL~~d-p 643 (1018)
T KOG2002|consen 588 ETILKKTSTKTDAYSLIALGNVYIQ------------ALHNPSRNP-----------EKEKKHQEKALQLYGKVLRND-P 643 (1018)
T ss_pred HHHHhhhccCCchhHHHHhhHHHHH------------HhcccccCh-----------HHHHHHHHHHHHHHHHHHhcC-c
Confidence 6555421 12344443333332221 111000000 112345678888999888863 4
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhHHHHH
Q 001637 783 LNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINE-GVSPNTATYNIL 861 (1039)
Q Consensus 783 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l 861 (1039)
.|..+-|-++-+++.+|++.+|..+|.++++... .+..+|-.+.+.|...|++..|+++|+...+. .-.-+.....+|
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 4888889999999999999999999999988632 35678999999999999999999999998764 333367888999
Q ss_pred HHHHHcCCChHHHHHHHHHHHh
Q 001637 862 LGIFLGTGSTKEVDDLFGEMKK 883 (1039)
Q Consensus 862 ~~~~~~~g~~~~A~~~~~~~~~ 883 (1039)
..++.+.|.+.+|.+.+..+..
T Consensus 723 ara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999888876
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=7.8e-24 Score=217.27 Aligned_cols=448 Identities=16% Similarity=0.153 Sum_probs=292.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHc
Q 001637 440 TTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKK 519 (1039)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 519 (1039)
..|..-..+.|++.+|++.-...-..+ +.+....-.+-..+.+..+++....--....+.... -..+|+.+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHh
Confidence 344444555666666666544443332 222222333334555555555554444444443322 456677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 001637 520 GMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLV 599 (1039)
Q Consensus 520 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 599 (1039)
|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql----------------------------- 179 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL----------------------------- 179 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-----------------------------
Confidence 77777777777777642 123456666666666666666666666655442
Q ss_pred HHHHhcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCC
Q 001637 600 VDMMSRGLVPDRV-NYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLT 677 (1039)
Q Consensus 600 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~ 677 (1039)
.|+.. ..+.+.......|++++|...+.+.++.. |.-..+|..|...+-..|+. .++.-|++.++. .
T Consensus 180 --------nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--d 248 (966)
T KOG4626|consen 180 --------NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--D 248 (966)
T ss_pred --------CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--C
Confidence 23222 11222223333444555555554444432 23344555555555555555 555555555543 4
Q ss_pred CC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-hHhHH
Q 001637 678 PD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPN-SVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPT-STTIK 754 (1039)
Q Consensus 678 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 754 (1039)
|+ ...|..|...|...+.+++|+..|.+.... .|+ .+.+..+...|...|.++-|+..|++.+. ..|+ ...+.
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~ 324 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYN 324 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHh
Confidence 55 556666666666666777776666666543 343 45566666666667777777777766663 3454 33566
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 001637 755 ILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMD-TITYNALMRGYWVS 833 (1039)
Q Consensus 755 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 833 (1039)
.+..+....|+..+|.+.|.+.+... +......+.|.++|...|.+++|..+|....+. .|+ ....+.|...|-+.
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhc
Confidence 66666666677777777777776642 224557788999999999999999999999874 455 66889999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 001637 834 SHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDA-STYDTLISGHAKIGNKKESIQ 911 (1039)
Q Consensus 834 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 911 (1039)
|++++|+..|++.++ +.|+ ...|+.+...|-..|+.+.|.+.+.+++. +.|.. ...+.|...|...|++.+|+.
T Consensus 402 gnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 999999999999999 9998 78999999999999999999999999997 45654 567889999999999999999
Q ss_pred HHHHHHHCCCccC-hHHHHHHHHHHHhcCCHHH
Q 001637 912 IYCEMITKGYVPK-TSTYNVLIGDFAKEGKMHQ 943 (1039)
Q Consensus 912 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 943 (1039)
.|++.++ ++|| +..|..++.++.-..+|.+
T Consensus 478 sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 478 SYRTALK--LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHc--cCCCCchhhhHHHHHHHHHhcccc
Confidence 9999998 8896 4667777666554444444
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.7e-18 Score=201.98 Aligned_cols=257 Identities=13% Similarity=0.056 Sum_probs=204.2
Q ss_pred cCChhHHHHHHHHHHHcC-CCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001637 763 SRRGDVILQMHERLVDMG-VRL-NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKAL 840 (1039)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 840 (1039)
.+++++|...++.+++.+ ..| ....++.++.++...|++++|+..|++..+.. +.+...|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888888887754 223 45678889999999999999999999998862 224678889999999999999999
Q ss_pred HHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 001637 841 ATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITK 919 (1039)
Q Consensus 841 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 919 (1039)
..|+++++ ..|+ ...|..++.++...|++++|...|+++++.. +.+...+..++.++.+.|++++|+..|+++++
T Consensus 386 ~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~- 461 (615)
T TIGR00990 386 EDFDKALK--LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK- 461 (615)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 99999988 5674 7888999999999999999999999999843 33456677888899999999999999999998
Q ss_pred CCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhhcCCCchhhHHH-hHhHHHHHHHHHH
Q 001637 920 GYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS-STYDILIGGWCELSNEPELDRTL-ILSYRAEAKKLFM 996 (1039)
Q Consensus 920 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~ 996 (1039)
..| ++..|+.++..|...|++++|++.|+++++ +.|+. .++..+...+... ...+ ..|.+++|..+++
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a------~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKA------LALFQWKQDFIEAENLCE 532 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHH------HHHHHHhhhHHHHHHHHH
Confidence 456 678999999999999999999999999999 66642 2221111111000 0011 2366899999999
Q ss_pred HHHhCCCCCChh-hHHHHHHHhhCCCChHHHHHHHHHHhh
Q 001637 997 EMNEKGFVPCES-TQTCFSSTFARPGKKADAQRLLQEFYK 1035 (1039)
Q Consensus 997 ~~~~~~~~p~~~-~~~~l~~~l~~~G~~~eA~~~~~~~~~ 1035 (1039)
++++.. |+.. ++..+++++.+.|++++|++++++..+
T Consensus 533 kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 533 KALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 998753 6655 688999999999999999999996654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=6.4e-18 Score=197.24 Aligned_cols=256 Identities=11% Similarity=0.051 Sum_probs=177.5
Q ss_pred CCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHhhccCChhHHH
Q 001637 694 GNLEIAFKLWDEMRRNG-IMP-NSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPT-STTIKILLDTSSKSRRGDVIL 770 (1039)
Q Consensus 694 g~~~~A~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~ 770 (1039)
+.+++|.+.|+...+.+ ..| ....|..+...+...|++++|+..+++.+.. .|+ ...+..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555555432 122 2334555555555555555555555555532 332 224444455555555666666
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 001637 771 QMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEG 850 (1039)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 850 (1039)
..++.+++.. +.+..++..++.+|...|++++|+..|++..+.. +.+...|..+...+.+.|++++|+..|++.++
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 6666555542 3366788889999999999999999999998763 33567788888889999999999999999887
Q ss_pred CCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc
Q 001637 851 VSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDAS------TYDTLISGHAKIGNKKESIQIYCEMITKGYVP 923 (1039)
Q Consensus 851 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 923 (1039)
..|+ ...++.+..++...|++++|++.|+++++.....+.. .+...+..+...|++++|+++++++++ +.|
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p 539 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDP 539 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCC
Confidence 5665 7788888999999999999999999988732111111 112222234456999999999999988 567
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 924 -KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 924 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
+...+..++..|...|++++|++.|+++.+ +.+.
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~--l~~~ 574 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAE--LART 574 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--Hhcc
Confidence 456788899999999999999999999998 5553
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=5.6e-19 Score=196.15 Aligned_cols=304 Identities=14% Similarity=0.102 Sum_probs=230.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCC---HhHHHHHHHHHHhc
Q 001637 618 MDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPD---LATYNIMISASCKQ 693 (1039)
Q Consensus 618 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~ 693 (1039)
...+...|++++|...|+++.+.+ |.+..++..+...+...|+. +|...++.+...+..++ ..++..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556677777777777777654 45556666666666666666 66666666665422221 24567777888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHH
Q 001637 694 GNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMH 773 (1039)
Q Consensus 694 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 773 (1039)
|++++|..+|+++.+.. .++..++..++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------------- 177 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV---------------------- 177 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------------
Confidence 88888888888887642 2356677888888888888888888888876532111000
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 001637 774 ERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP 853 (1039)
Q Consensus 774 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 853 (1039)
.....+..++..+.+.|++++|...|+++.+.. +.+...+..++..+.+.|++++|++.|+++.+. .|
T Consensus 178 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p 245 (389)
T PRK11788 178 ---------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DP 245 (389)
T ss_pred ---------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Ch
Confidence 011235567888899999999999999998753 334668888899999999999999999999984 45
Q ss_pred C--hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHH
Q 001637 854 N--TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVL 931 (1039)
Q Consensus 854 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 931 (1039)
+ ..++..++.++...|++++|.+.++++.+. .|+...+..++..+.+.|++++|.++++++++ ..|+...++.+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l 321 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRL 321 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHH
Confidence 4 466788999999999999999999999874 46666668889999999999999999999998 57988888888
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHCCCCCChh
Q 001637 932 IGDFAK---EGKMHQARELLKEMQARGRNPNSS 961 (1039)
Q Consensus 932 ~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~ 961 (1039)
+..+.. .|+.++|+.++++|+++++.|++.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 877664 569999999999999988888874
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=9.3e-19 Score=194.38 Aligned_cols=292 Identities=14% Similarity=0.127 Sum_probs=130.3
Q ss_pred HHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCH
Q 001637 215 FCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPD---IVSYNTLISGFCKRGDF 291 (1039)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~g~~ 291 (1039)
+...|+++.|...|.+++..++ .+..+|..+...|...|++++|..+++.+...+..++ ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444555555555555555432 3344555555555566666666666555554321111 12344555555555555
Q ss_pred HHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----Hh
Q 001637 292 VKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPD----VV 367 (1039)
Q Consensus 292 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~ 367 (1039)
++|..+|+++.+. .+++..+++.++..+.+.|++++|.+.++.+.+.+..+. ..
T Consensus 124 ~~A~~~~~~~l~~----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 181 (389)
T PRK11788 124 DRAEELFLQLVDE----------------------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH 181 (389)
T ss_pred HHHHHHHHHHHcC----------------------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 5555555555431 112334455555555555555555555555554432211 11
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001637 368 TYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLF 447 (1039)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 447 (1039)
.+..+...+.+.|++++|...|+++.+... .+...+..+...+.+.|++++|.++|+++...+......+++.++.+|.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 233344444455555555555555544321 1233444444444444444444444444444322211233344444444
Q ss_pred HcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHH---cCCHHH
Q 001637 448 KAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVK---KGMLDE 524 (1039)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~ 524 (1039)
+.|++++|.+.++.+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++
T Consensus 261 ~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchh
Confidence 4444444444444444331 22223333444444444444444444444332 2333344433333332 223444
Q ss_pred HHHHHHHHHh
Q 001637 525 AANVMRKMKS 534 (1039)
Q Consensus 525 A~~~~~~~~~ 534 (1039)
+..++++|.+
T Consensus 337 a~~~~~~~~~ 346 (389)
T PRK11788 337 SLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5.3e-17 Score=188.13 Aligned_cols=323 Identities=11% Similarity=0.041 Sum_probs=154.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-
Q 001637 584 NYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC- 662 (1039)
Q Consensus 584 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~- 662 (1039)
..+.+.|+.++|..++...+..... +...+..++.+....|++++|...++++.+.. |.+...+..+...+...|+.
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 3344444555555544444442111 12223333334444555555555555555443 44444555555555555555
Q ss_pred HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 001637 663 EVQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDM 741 (1039)
Q Consensus 663 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 741 (1039)
+|...++++.+. .|+ ...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...++++
T Consensus 128 ~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 128 TVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 555555555443 333 444445555555555555555555544432111 11122122 2244555555555555554
Q ss_pred HhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCC
Q 001637 742 LVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRK----ATSVLEDMRGRGIM 817 (1039)
Q Consensus 742 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~ 817 (1039)
+.....++......+..++...|+.++|...+..+++.. +.+..++..+..+|...|++++ |+..|++..+.. +
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence 433211222222233344445555555555555555432 2244455555556666665554 555555555531 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-HHHHH
Q 001637 818 MDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDA-STYDT 895 (1039)
Q Consensus 818 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ 895 (1039)
.+...+..+...+...|++++|+..+++.+. ..|+ ...+..+..++...|++++|...++++.+. .|+. ..+..
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 2344555555556666666666666666555 3443 334444555555666666666666555542 2222 12222
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 001637 896 LISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 896 l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
+..++...|+.++|++.|+++++
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555666666666666555
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=1.4e-14 Score=157.86 Aligned_cols=668 Identities=13% Similarity=0.090 Sum_probs=395.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 001637 329 PNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLI 408 (1039)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 408 (1039)
|.+...-...+...-.|++++|.+++.++++.... +...|..|...|-..|+.+++...+-.+-.... .|...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHH
Confidence 33333333334334449999999999999987533 678899999999999999999987766655533 3778999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHH----HHHHHHhc
Q 001637 409 DSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSS----LIDGCCKL 484 (1039)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~ 484 (1039)
....+.|.++.|.-.|.++++..+. +...+-.-+..|-+.|+...|.+.|.++.....+.|..-... ++..+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998655 666666667889999999999999999998764444443333 45567777
Q ss_pred CChHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH------------------
Q 001637 485 GDMSAAESILQEMEEKH-VVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFA------------------ 545 (1039)
Q Consensus 485 g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------------ 545 (1039)
++.+.|.+.++.....+ -..+...++.++..|.+...++.|......+......+|..-|.
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 88899999998887732 22355678889999999999999999888877633333332220
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHH
Q 001637 546 --------ALIDGYFKAGKQEVAFDLYNDLKLVG--MEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYT 615 (1039)
Q Consensus 546 --------~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 615 (1039)
-+.-++.+....+....+........ +..+...+.-+..++...|++.+|+.++..+.......+...|-
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 11112222222222222222233333 33445556666666777777777777777766654444455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhc--------CCCCCHhHHHHH
Q 001637 616 SLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEM--------GLTPDLATYNIM 686 (1039)
Q Consensus 616 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~--------~~~p~~~~~~~l 686 (1039)
.+..+|...|.+++|...|+.+.... |.+..+-..|...+.+.|+. +|.+.++.+... +..|+.......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 67777777777777777777766653 55566666666666666666 666666654321 112222223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhh
Q 001637 687 ISASCKQGNLEIAFKLWDEMRRNG-----IMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSS 761 (1039)
Q Consensus 687 ~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 761 (1039)
.+.+.+.|+.++=+..-..|+... +-|+..--.....+-. +..-.......+..+..
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~------------------~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGT------------------TSKRYSELLKQIIRARE 594 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccc------------------cccccchhHHHHHHHHh
Confidence 444555555554333333333210 0000000000000000 01111122222222222
Q ss_pred ccCChhHHHHH---H---HHHHHcCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHH---H-HHHHHH
Q 001637 762 KSRRGDVILQM---H---ERLVDMGVRLNQ--AYYNSLITILCRLGMTRKATSVLEDMRGRGIM-MDTI---T-YNALMR 828 (1039)
Q Consensus 762 ~~~~~~~a~~~---~---~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~---~-~~~l~~ 828 (1039)
+.++....... . .-....|+.-+. ..+.-++..+++.+++++|+.+...+.+...- .+.. . -..++.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 22221111111 0 011111222222 24556788899999999999998887764221 1222 1 233445
Q ss_pred HHHhcCChHHHHHHHHHHHHC---CCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 001637 829 GYWVSSHINKALATYTQMINE---GVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIG 904 (1039)
Q Consensus 829 ~~~~~~~~~~A~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 904 (1039)
+....+++.+|.+..+.|+.. ...|. ...|++..+.....|+---=..++..+......-+...+...++.+..++
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~ 754 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNA 754 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhcc
Confidence 667889999999999999864 12343 44555444555444442222233333322111111222222334456788
Q ss_pred CHHHHHHHHHHHHHCCCccChHHHHHHH-HHH----------HhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHh
Q 001637 905 NKKESIQIYCEMITKGYVPKTSTYNVLI-GDF----------AKEGKMHQARELLKEMQARGRNP--NSSTYDILIGGWC 971 (1039)
Q Consensus 905 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~----------~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~ 971 (1039)
.+.-|+..+-++-. ..||....+.++ -++ .++-..-+++..+++..+.- .+ --.++++++.+|.
T Consensus 755 s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR-~~~~~QEa~YNigRayh 831 (895)
T KOG2076|consen 755 SFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELR-RCEEKQEAFYNIGRAYH 831 (895)
T ss_pred chHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHH
Confidence 89999998888776 456533333222 222 23345566777777766632 22 3457888899887
Q ss_pred hcCCCchhhHHHhHhHHHHHHHHHHHHHhCC-----------CCCChhhHHHHHHHhhCCCChHHHHHHHHHH
Q 001637 972 ELSNEPELDRTLILSYRAEAKKLFMEMNEKG-----------FVPCESTQTCFSSTFARPGKKADAQRLLQEF 1033 (1039)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----------~~p~~~~~~~l~~~l~~~G~~~eA~~~~~~~ 1033 (1039)
..| ...-|..+++++++.. +.-..++.+.+.-++.+.|+..-|.+++++-
T Consensus 832 ~~g------------l~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 832 QIG------------LVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred Hcc------------cHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 654 3566888888887541 1122335557788899999999999998864
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=2.6e-14 Score=155.75 Aligned_cols=284 Identities=14% Similarity=0.126 Sum_probs=156.6
Q ss_pred HHHcCChhHHHHHHHHHHHCC--CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHH
Q 001637 446 LFKAGRPSEAEDTFNLILKHN--LVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLD 523 (1039)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 523 (1039)
+.+....+...-+.....+.+ +.-+...|.-+.++|...|++.+|+.+|..+......-+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 334444444444444444444 333455678888888888889899988888887755556778888888888888899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCccHHHHHHHHHHHHhcCCHHHH
Q 001637 524 EAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKL--------VGMEENNYILDIFVNYLKRHGKMKEA 595 (1039)
Q Consensus 524 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A 595 (1039)
+|.+.+++++.. .+.+...-..|...+.+.|+.++|.+.++.+.. .+..|+..+.......+.+.|+.++=
T Consensus 467 ~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999888888875 233445566677778888888888888887542 22334444445555556666766664
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HH------HHHH
Q 001637 596 NGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EV------QSVY 668 (1039)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a------~~~~ 668 (1039)
......|+.... ....+- -+..++... .....+.+........++.+-.+.++. .. ...+
T Consensus 546 i~t~~~Lv~~~~------~~~~~f-----~~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 546 INTASTLVDDFL------KKRYIF-----PRNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHHHHHHH------HHHHhc-----chHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 444444433100 000000 000000000 000000111222222333333333222 10 0111
Q ss_pred HHHHhcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHH
Q 001637 669 SGMKEMGLTPD--LATYNIMISASCKQGNLEIAFKLWDEMRRNG-IMPNSV----TCNVLVGGLVGFGEIEKAMDVLNDM 741 (1039)
Q Consensus 669 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 741 (1039)
..-...|+.-+ -..+.-++..+++.+++++|..+...+.... +.-+.. .-...+.+....+++.+|..+++.|
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11111222222 1234556677888888888888887776532 111222 2234556667788888888888888
Q ss_pred Hh
Q 001637 742 LV 743 (1039)
Q Consensus 742 ~~ 743 (1039)
+.
T Consensus 693 i~ 694 (895)
T KOG2076|consen 693 IT 694 (895)
T ss_pred HH
Confidence 74
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=2.7e-14 Score=149.03 Aligned_cols=599 Identities=11% Similarity=0.051 Sum_probs=414.2
Q ss_pred cCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 001637 218 IGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSL 297 (1039)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 297 (1039)
.++...|+.++..+.+.+| .++..|-+-...--..|++..|+.+..+=-+. ++.+...|.-- ++....+.|..+
T Consensus 264 l~DikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHH
Confidence 3466677777777777655 56667777777777777777777766554333 12223333322 223334445555
Q ss_pred HHHHHhcccCCcccccccccccccCC--------CcccCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 001637 298 IDEVLGSQKERDADTSKADNFENENG--------NVEVEP-NLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVT 368 (1039)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 368 (1039)
.....+.-|.......++.+++..-. .....| ++..|-..+ .....++|+-++....+. ++.+...
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dL 412 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDL 412 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHH
Confidence 55555433333222222222221110 011223 333444333 345666688888888875 2223344
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH----HcCCCCCHHHHHHHHH
Q 001637 369 YSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMM----VRGVAFDVVVYTTLMD 444 (1039)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~l~~ 444 (1039)
|. +|.+..-++.|..++....+. ++.+...|.+....--.+|+.+...++.++-+ ..|+..+...|..=..
T Consensus 413 wl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 413 WL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 43 567778889999999988775 55688888888877788899888888876653 4588889999988888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCH
Q 001637 445 GLFKAGRPSEAEDTFNLILKHNLVSN--HVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGML 522 (1039)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 522 (1039)
.|-..|..-.+..+....+..|+... ..||..-...|.+.+.++-|..+|...++.-+. +...|...+..--..|..
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcH
Confidence 88888999888888888888776543 348888899999999999999999998886444 778898888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001637 523 DEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDM 602 (1039)
Q Consensus 523 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 602 (1039)
++-..+|++.... .+-....|......+-..|+...|..++..+.+.... +..+|-.-+.....+..+++|..+|.+.
T Consensus 567 Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 567 ESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999999886 4445566666677788889999999999988876433 6677878888888999999999999988
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCC-H
Q 001637 603 MSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPD-L 680 (1039)
Q Consensus 603 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~-~ 680 (1039)
.. ..|+...|..-+....-.++.++|++++++..+. +|.-...|..+.+.+-+.++. .|.+.|..-.+. -|+ +
T Consensus 645 r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~i 719 (913)
T KOG0495|consen 645 RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSI 719 (913)
T ss_pred hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCc
Confidence 77 4577778877777777889999999999998886 465567888888888888888 777777665554 455 6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHh
Q 001637 681 ATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTS 760 (1039)
Q Consensus 681 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 760 (1039)
..|..|...--+.|.+-.|+.+++...-.+ +.+...|...|+.=.+.|..++|..+..++++ .++.+...|...+...
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLWAEAIWLE 797 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhHHHHHHhc
Confidence 677777777788889999999999887664 23678888889888899999999888888775 3333444555555544
Q ss_pred hccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001637 761 SKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKAL 840 (1039)
Q Consensus 761 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 840 (1039)
...++.-.....+.+ ...|+.+.-.+..++....+++.|.+.|.+..+.+ +-.-.+|.-+...+.++|.-++-.
T Consensus 798 ~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred cCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHH
Confidence 444443333333322 23455555566666666666666666666666542 112445555555666666666666
Q ss_pred HHHHHHHH
Q 001637 841 ATYTQMIN 848 (1039)
Q Consensus 841 ~~~~~~~~ 848 (1039)
++|++...
T Consensus 872 ev~~~c~~ 879 (913)
T KOG0495|consen 872 EVLKKCET 879 (913)
T ss_pred HHHHHHhc
Confidence 66665554
No 25
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=6.3e-14 Score=146.29 Aligned_cols=593 Identities=12% Similarity=0.048 Sum_probs=393.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 001637 344 QQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFAL 423 (1039)
Q Consensus 344 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 423 (1039)
.+++.+|+-+++...+.+.. ++..|.+-...--..|++..|..+..+--+. +..+...|.--+ +....+.|..+
T Consensus 264 l~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHH
Confidence 35788899999999887643 5556665555555677777777666554433 222344443332 23444555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 001637 424 QSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVV 503 (1039)
Q Consensus 424 ~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 503 (1039)
.......-+. ++..|...++. ..+...=.+++...+++- +.++..|-..+. ..+.+.|.-++....+. ++
T Consensus 338 vA~Avr~~P~-Sv~lW~kA~dL---E~~~~~K~RVlRKALe~i-P~sv~LWKaAVe----lE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 338 VANAVRFLPT-SVRLWLKAADL---ESDTKNKKRVLRKALEHI-PRSVRLWKAAVE----LEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHHhCCC-ChhhhhhHHhh---hhHHHHHHHHHHHHHHhC-CchHHHHHHHHh----ccChHHHHHHHHHHHHh-cc
Confidence 5555544222 33333222211 122233344555555542 344445544433 34455577777777664 22
Q ss_pred CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCccHHHH
Q 001637 504 PNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLK----LVGMEENNYIL 579 (1039)
Q Consensus 504 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~ 579 (1039)
.+...| -+|.+..-++.|..++.+..+. ++.+...|.+-...--..|+.+...++..+-. ..|+..+...|
T Consensus 408 ~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 233333 3455666677888888887775 66677777776666667777777777766533 35677777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001637 580 DIFVNYLKRHGKMKEANGLVVDMMSRGLVPD--RVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLL 657 (1039)
Q Consensus 580 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 657 (1039)
-.=...|...|..-.+..++...+.-|++.. ..+|..-...|.+.+.++-|+.+|...++- +|.+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 7777777777877777777777777666543 247777777888888888888888887776 3667777877777777
Q ss_pred hcCch-HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 001637 658 RHGKC-EVQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAM 735 (1039)
Q Consensus 658 ~~g~~-~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 735 (1039)
.+|.. +...+|+++... .|. ...|......+...|++..|+.++....+.... +...|-..+........++.|.
T Consensus 562 ~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred hcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHH
Confidence 77777 677777777775 344 555666667777778888888888887775322 5667777777788888888888
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 001637 736 DVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRG 815 (1039)
Q Consensus 736 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 815 (1039)
.+|.+.. ...|+...|..-...-..+++.++|+++.+..++. ++.-.-.|-.++.++.+.++++.|.+.+..-.+.
T Consensus 639 ~llakar--~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~- 714 (913)
T KOG0495|consen 639 DLLAKAR--SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK- 714 (913)
T ss_pred HHHHHHh--ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-
Confidence 8888776 45677777777777777778888888888888775 2333457777888888888888888887776654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 001637 816 IMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYD 894 (1039)
Q Consensus 816 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 894 (1039)
++-.+..|-.+...-.+.|+.-+|..++++... -.| +...|...+.+-.+.|..++|..+..++++. .+.+...|.
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWa 791 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWA 791 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHH
Confidence 444566777777777777888888888888776 345 4667777788888888888888888887763 344556677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhhc
Q 001637 895 TLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS-STYDILIGGWCEL 973 (1039)
Q Consensus 895 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~ 973 (1039)
--|.+..+-++...+...+++ .+-|+.+.-+....+....++++|.+.|+++++ +.||. -+|..+-..+...
T Consensus 792 EaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRH 864 (913)
T ss_pred HHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHh
Confidence 777777777776666665555 344667766777777777788888888888888 66753 3444444444444
Q ss_pred CC
Q 001637 974 SN 975 (1039)
Q Consensus 974 ~~ 975 (1039)
|+
T Consensus 865 G~ 866 (913)
T KOG0495|consen 865 GT 866 (913)
T ss_pred CC
Confidence 54
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=8.4e-17 Score=186.49 Aligned_cols=330 Identities=15% Similarity=0.077 Sum_probs=226.8
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001637 174 NTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKS 253 (1039)
Q Consensus 174 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 253 (1039)
..++..+.+.|++++|..++...+... +.+...+..++.++...|++++|...+++++...| .+...|..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHc
Confidence 334455566677777777777766554 33445555666666677888888888877777544 4566677777888888
Q ss_pred CChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCCh-
Q 001637 254 GDLSSALKLMEGMRREGVIP-DIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNL- 331 (1039)
Q Consensus 254 g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 331 (1039)
|++++|...|+++.+. .| +...+..++..+...|++++|...++.+... .|+.
T Consensus 124 g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-----------------------~P~~~ 178 (656)
T PRK15174 124 KQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-----------------------VPPRG 178 (656)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----------------------CCCCH
Confidence 8888888888887774 33 3456777777788888888888888777652 1222
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001637 332 ITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSL 411 (1039)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 411 (1039)
..+..+ ..+.+.|++++|...++.+++....++...+..+...+.+.|++++|...|+++.+.... +...+..+...+
T Consensus 179 ~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l 256 (656)
T PRK15174 179 DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAY 256 (656)
T ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 222222 336677888888888887776543334444555566777788888888888887766432 566677777788
Q ss_pred HhcCCHhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCCh
Q 001637 412 FKAGCAME----AFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDM 487 (1039)
Q Consensus 412 ~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 487 (1039)
...|++++ |...|++.....+. +..++..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 88888775 67778877776544 66777788888888888888888888877764 33455666777788888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 001637 488 SAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQ 535 (1039)
Q Consensus 488 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 535 (1039)
++|...++.+...++. +...+..+..++...|+.++|...|++..+.
T Consensus 335 ~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 335 TAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888887766433 2333444566777888888888888887764
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.6e-16 Score=188.66 Aligned_cols=423 Identities=13% Similarity=0.042 Sum_probs=260.8
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 001637 505 NVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVN 584 (1039)
Q Consensus 505 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 584 (1039)
+.....-.+......|+.++|++++.+.... .+.+...+..+..++...|++++|..++++..... +.+......++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455556666777788888888888877752 23445567777777888888888888887776542 223344445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-H
Q 001637 585 YLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-E 663 (1039)
Q Consensus 585 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~ 663 (1039)
.+...|+.++|...++++++. .+.+.. +..+..++...|+.++|+..++++.+.. |.+...+..+...+...+.. +
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 666666666666666666653 122333 5556666666666666666666666653 44444444444444444444 4
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HccCCH---HHHH
Q 001637 664 VQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGL-----VGFGEI---EKAM 735 (1039)
Q Consensus 664 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~g~~---~~A~ 735 (1039)
|.+.++.+.. .|+... .+ .......++... ...+++ ++|+
T Consensus 169 Al~~l~~~~~---~p~~~~--~l---------------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 169 ALGAIDDANL---TPAEKR--DL---------------------------EADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHHhCCC---CHHHHH--HH---------------------------HHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 4444443332 122000 00 000001111111 111222 5556
Q ss_pred HHHHHHHhC-CCCCChH-hH----HHHHHHhhccCChhHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHH
Q 001637 736 DVLNDMLVW-GFSPTST-TI----KILLDTSSKSRRGDVILQMHERLVDMGVR-LNQAYYNSLITILCRLGMTRKATSVL 808 (1039)
Q Consensus 736 ~~~~~~~~~-~~~p~~~-~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 808 (1039)
+.++.+++. ...|+.. .+ ...+.++...++.++|+..++.+++.+.+ |+. ....+..+|...|++++|+..|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHH
Confidence 666665532 2222221 11 01122334556667777777776665421 221 2222567888888888888888
Q ss_pred HHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCC---hhHHHHHHHHHHcCCCh
Q 001637 809 EDMRGRGIMM---DTITYNALMRGYWVSSHINKALATYTQMINEG-----------VSPN---TATYNILLGIFLGTGST 871 (1039)
Q Consensus 809 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~p~---~~~~~~l~~~~~~~g~~ 871 (1039)
+++....... ....+..+..++...|++++|++.++++.... -.|+ ...+..+..++...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 8877542111 12345566667788888999988888887631 1122 23445677788899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 872 KEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKE 950 (1039)
Q Consensus 872 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 950 (1039)
++|++.++++.+. .+.+...+..++..+...|+.++|++.++++++ +.| +...+..++..+...|++++|+.++++
T Consensus 376 ~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 376 PQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999874 244566778888889999999999999999998 678 467777888889999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHH
Q 001637 951 MQARGRNPNSSTYDILIGGW 970 (1039)
Q Consensus 951 ~~~~g~~p~~~~~~~l~~~~ 970 (1039)
+++ ..|+......+-..+
T Consensus 453 ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 453 VVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHH--hCCCCHHHHHHHHHH
Confidence 999 788766554444444
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.82 E-value=7.2e-14 Score=151.11 Aligned_cols=756 Identities=14% Similarity=0.089 Sum_probs=416.5
Q ss_pred HHHhHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCc
Q 001637 91 FFTMRNFNIIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHSFCKVGNLSFALDFLRNVDIDVDN 170 (1039)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 170 (1039)
+-.+...|+.|+-++|..+|..|+..|+.+.|- +|.-|.-...+-+...++.++.+....++.+.+. .|..
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep~a 83 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EPLA 83 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CCch
Confidence 345667788899999999999999999998888 8888876667777788888888888888777553 6777
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001637 171 VTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGY 250 (1039)
Q Consensus 171 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 250 (1039)
.||+.|..+|.+.|++.. ++..++ ..-.+...+...|.-..-+++.-.. ...+.....-.+.|...
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~--~c~p~~lpda~n~illl 149 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKI--HCCPHSLPDAENAILLL 149 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhc--ccCcccchhHHHHHHHH
Confidence 889999999999888765 222222 1112222333333333333332221 11111112223345555
Q ss_pred HhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCC
Q 001637 251 CKSGDLSSALKLMEGMRREGV-IPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEP 329 (1039)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1039)
.-.|-++.++++...++..-- .|-.+ .+.-+... .....++....... .+ .|
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl--------------------~e-~~ 202 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSL--------------------VE-AP 202 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHh--------------------hc-CC
Confidence 566666777776666544210 11111 12222221 12222222222210 11 48
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001637 330 NLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLID 409 (1039)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 409 (1039)
+..++..++..-.-.|+.+.|..++.+|.+.|++-+...|..|+-+ .++...+..+.+-|...|+.|+..|+...+-
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 8999999999999999999999999999999999999988888765 8888899999999999999999999998887
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH------------HHHHCCCcccHHHHHHH
Q 001637 410 SLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFN------------LILKHNLVSNHVTYSSL 477 (1039)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------~~~~~~~~~~~~~~~~l 477 (1039)
.+.++|....+. .|.+ ....+++-...-.-.| ..|.+.++ +..-.|+.....+|...
T Consensus 280 p~l~N~~t~~~~--------e~sq-~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c 348 (1088)
T KOG4318|consen 280 PQLSNGQTKYGE--------EGSQ-LAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC 348 (1088)
T ss_pred hhhcchhhhhcc--------cccc-hhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH
Confidence 777766522221 1222 2222233222222223 22222221 11112222222334333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC--CC-CCHHhHHHHHHHHHHcCCHHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHH
Q 001637 478 IDGCCKLGDMSAAESILQEMEEKH--VV-PNVITYSSIINGYVKKGMLDEAANVMR--KMKSQNIMPNVFIFAALIDGYF 552 (1039)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~li~~~~ 552 (1039)
+.. ..+|.-++.+++-..+..-- .. .++..+..++.-|.+.-+..-...++. +..+.. .+...---+.....
T Consensus 349 ~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~ 425 (1088)
T KOG4318|consen 349 EKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLE 425 (1088)
T ss_pred HHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHH
Confidence 322 22577777777776665421 11 134445555554443321111111111 111110 00000001111111
Q ss_pred hcCCHHHHHHHHHHHHH----cCCC-------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 001637 553 KAGKQEVAFDLYNDLKL----VGME-------ENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGF 621 (1039)
Q Consensus 553 ~~g~~~~a~~~~~~~~~----~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 621 (1039)
+. +...+.+-+..... .... +-..+.+.++..+++.-+..+++..-+.....-+ ...|..|+..+
T Consensus 426 ~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~ 501 (1088)
T KOG4318|consen 426 NL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLM 501 (1088)
T ss_pred Hh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhH
Confidence 10 11111111111110 0011 1123344555566666666666655444433211 14688888988
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCC-CCC-HhHHHHHHHHHHhcCCH
Q 001637 622 FKVGKETAALNIAQEMTEKN--IPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGL-TPD-LATYNIMISASCKQGNL 696 (1039)
Q Consensus 622 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~ 696 (1039)
......+.|..+.++....+ +..+..-+..+.+.+.+.+.. .+..++.++.+.-. .|+ ..+...+.+.-...|+.
T Consensus 502 ~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqq 581 (1088)
T KOG4318|consen 502 DLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQ 581 (1088)
T ss_pred HHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCH
Confidence 88889999998888876543 234556677788888888888 88888888776422 232 44556667777788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHH
Q 001637 697 EIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERL 776 (1039)
Q Consensus 697 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 776 (1039)
+.-.++++-+...|+.-+ .-++....+.++...|.+.++.... ..+|.+.....+.+...+. ..+....+-
T Consensus 582 e~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~q-kyk~~P~~~e~lcrlv~ke-~td~~qk~m--- 652 (1088)
T KOG4318|consen 582 EKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQ-KYKPYPKDLEGLCRLVYKE-TTDSPQKTM--- 652 (1088)
T ss_pred HHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHH-HhcCChHHHHHHHHHHHhh-ccccHHHHH---
Confidence 888888877776654431 2233344566777777777665543 3344443333333322211 110000000
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH-----------hCC-CC---------CCHHHHHHHHHHHHhcCC
Q 001637 777 VDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMR-----------GRG-IM---------MDTITYNALMRGYWVSSH 835 (1039)
Q Consensus 777 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~-~~---------~~~~~~~~l~~~~~~~~~ 835 (1039)
-...-+..|.++|++.+|.++.+.-- ..| +. .+.....-++..|.+.|+
T Consensus 653 ----------Dls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~ 722 (1088)
T KOG4318|consen 653 ----------DLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGR 722 (1088)
T ss_pred ----------hhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhH
Confidence 00111223666676666666554210 000 00 011122336778888999
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCC---hHHHHHHHHHHHh-CCCCCCHHH-HHHHHHHHhccCCHHHHH
Q 001637 836 INKALATYTQMINEGVSPNTATYNILLGIFLGTGS---TKEVDDLFGEMKK-RGLKPDAST-YDTLISGHAKIGNKKESI 910 (1039)
Q Consensus 836 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~p~~~~-~~~l~~~~~~~g~~~~A~ 910 (1039)
++.|..+|.++. +.|+..+...+++.+.+... +.++....++..+ +..-|.... |.--+...++-...+.|.
T Consensus 723 ~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAk 799 (1088)
T KOG4318|consen 723 IERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAK 799 (1088)
T ss_pred HHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHH
Confidence 999999999887 67887777778777765444 4444444444443 222232222 222222233445566788
Q ss_pred HHHHHHHHCCCccChHHHHHHHHHHHhcC
Q 001637 911 QIYCEMITKGYVPKTSTYNVLIGDFAKEG 939 (1039)
Q Consensus 911 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 939 (1039)
+.|++..+....-+..++...+..+.++.
T Consensus 800 k~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 800 KCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 89988887633336777777777776654
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.2e-16 Score=156.78 Aligned_cols=491 Identities=14% Similarity=0.118 Sum_probs=325.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHhHHH
Q 001637 437 VVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTY-SSLIDGCCKLGDMSAAESILQEMEEKHVVPN----VITYSS 511 (1039)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 511 (1039)
.+...|..-|.......+|+..++-+.+...-|+.-.. ..+.+.+.+..++.+|++.++..+..-+..+ +...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445556677777788899999888887666665433 3355678888899999999998887632222 234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 001637 512 IINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGK 591 (1039)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 591 (1039)
+.-.+.+.|+++.|+.-|+...+. .|+..+-..|+-++...|+.++..+.|.+|......+|..-|
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky------------ 347 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY------------ 347 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc------------
Confidence 556778899999999999998874 578877777777777889999999999999876655554322
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHH-----HHHhcCCHHHHHHHHH---HHHHCCCCCCHHHHHHHHHHHHhcCchH
Q 001637 592 MKEANGLVVDMMSRGLVPDRVNYTSLMD-----GFFKVGKETAALNIAQ---EMTEKNIPFDVTAYNVLINGLLRHGKCE 663 (1039)
Q Consensus 592 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 663 (1039)
++..-.|+....+.-+. -.-+.+ -..|.+..- +++.--+.|+ |+ .|...
T Consensus 348 -----------i~~~ddp~~~ll~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~----------fa-~g~dw 404 (840)
T KOG2003|consen 348 -----------IKEKDDPDDNLLNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPD----------FA-AGCDW 404 (840)
T ss_pred -----------cCCcCCcchHHHHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccc----------hh-cccHH
Confidence 11112233322222111 111111 111111111 1111111111 11 11111
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHccCCHHHHHHHHHHH
Q 001637 664 VQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVL--VGGLVGFGEIEKAMDVLNDM 741 (1039)
Q Consensus 664 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 741 (1039)
..+.++.-....+.-+.. ..-..-+.+.|+++.|++++.-+.+..-+.....-+.| +.-+..-.++.+|..+-+.+
T Consensus 405 cle~lk~s~~~~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 405 CLESLKASQHAELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 122222221111111111 11223578999999999999888765333323333333 22222345677888877776
Q ss_pred HhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 001637 742 LVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTI 821 (1039)
Q Consensus 742 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 821 (1039)
+... +-+......-.......|++++|...|..++..+.. .......+.-.+...|++++|+.+|-++... +..+..
T Consensus 483 ln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 483 LNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred hccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 5321 223333333334455679999999999999887533 3334444677889999999999999887543 233666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001637 822 TYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGH 900 (1039)
Q Consensus 822 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 900 (1039)
....+...|....+..+|++++.+... +.| |+..+.-|.+.|-+.|+..+|.+.+-.--++ ++-+..+...|...|
T Consensus 560 vl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayy 636 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYY 636 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHH
Confidence 777788889999999999999988877 666 5889999999999999999999988766554 566777877888888
Q ss_pred hccCCHHHHHHHHHHHHHCCCccChHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 001637 901 AKIGNKKESIQIYCEMITKGYVPKTSTYNVLI-GDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSN 975 (1039)
Q Consensus 901 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 975 (1039)
....-.++|+.+|++..- +.|+.+-|-.|+ +++.+.|++++|..+++...++ ++-|..+...|+..+...|-
T Consensus 637 idtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 888889999999999876 899999999988 5566789999999999999984 34477788888888777663
No 30
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=9.9e-16 Score=181.92 Aligned_cols=404 Identities=12% Similarity=0.052 Sum_probs=269.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 001637 582 FVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGK 661 (1039)
Q Consensus 582 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 661 (1039)
.+......|+.++|++++...... -+.+...+..+...+.+.|++++|..++++..+.. |.+...+..++..+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 334444555555555555555431 12233346666666677777777777777766653 5556666666666666777
Q ss_pred h-HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHH
Q 001637 662 C-EVQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMP-NSVTCNVLVGGLVGFGEIEKAMDVL 738 (1039)
Q Consensus 662 ~-~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 738 (1039)
. +|...++++++. .|+ .. +..+..++...|+.++|+..++++.+. .| +...+..+..++...+..++|++.+
T Consensus 99 ~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 99 YDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 6 677777776665 444 44 777777777788888888888887774 33 4555566677777777777787777
Q ss_pred HHHHhCCCCCChH------hHHHHHHHh-----hccCCh---hHHHHHHHHHHHc-CCCccHH-----HHHHHHHHHHhc
Q 001637 739 NDMLVWGFSPTST------TIKILLDTS-----SKSRRG---DVILQMHERLVDM-GVRLNQA-----YYNSLITILCRL 798 (1039)
Q Consensus 739 ~~~~~~~~~p~~~------~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~ 798 (1039)
+.+.. .|+.. .....+... ...+++ +.|+..++.+++. ...|+.. .....+..+...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 66542 22210 111111111 112223 6678888888754 1222211 111112344677
Q ss_pred CChHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHcCCCh
Q 001637 799 GMTRKATSVLEDMRGRGIM-MD-TITYNALMRGYWVSSHINKALATYTQMINEGVSPN-----TATYNILLGIFLGTGST 871 (1039)
Q Consensus 799 g~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~ 871 (1039)
|++++|+..|+++.+.+.+ |+ ...| +...|...|++++|+..|++++.. .|. ......+..++...|++
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccH
Confidence 9999999999999987532 33 2233 577899999999999999998873 332 24456677788999999
Q ss_pred HHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHH
Q 001637 872 KEVDDLFGEMKKRGL-----------KPD---ASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFA 936 (1039)
Q Consensus 872 ~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 936 (1039)
++|.+.++++.+... .|+ ...+..+...+...|+.++|++.+++++. ..| +...+..++..+.
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 999999999986421 123 12445677788899999999999999998 566 7788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 001637 937 KEGKMHQARELLKEMQARGRNPNS-STYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSS 1015 (1039)
Q Consensus 937 ~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 1015 (1039)
..|++++|++.++++++ +.||. ..+..++..+... +.+++|...++++++. .|+......+.+
T Consensus 405 ~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~------------~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~ 468 (765)
T PRK10049 405 ARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDL------------QEWRQMDVLTDDVVAR--EPQDPGVQRLAR 468 (765)
T ss_pred hcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 99999999999999999 88964 4444554444433 4479999999999874 588776666655
Q ss_pred Hh
Q 001637 1016 TF 1017 (1039)
Q Consensus 1016 ~l 1017 (1039)
.+
T Consensus 469 ~~ 470 (765)
T PRK10049 469 AR 470 (765)
T ss_pred HH
Confidence 54
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.81 E-value=4e-15 Score=160.55 Aligned_cols=603 Identities=14% Similarity=0.088 Sum_probs=307.1
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH--HHHHhCCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCC
Q 001637 125 VYTHMISCGVLPNVFTINVLVHSFCKVGNLSFAL--DFLRNVDIDVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGIS 202 (1039)
Q Consensus 125 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~--~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 202 (1039)
++..+...|+.||.+||.++|.-||..|+.+.|- .+++-...+.+...++.++.+..+.++.+.+. .
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 4556667778888888888888888888777664 33333344556667777777777777665554 5
Q ss_pred cCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCChhhHHHH
Q 001637 203 VDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRR-EGVIPDIVSYNTL 281 (1039)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~~~~~l 281 (1039)
|-+.||+.|+.+|...|++.. |+...+ ..-.++..+...|....-..++-.+.- .+.-||.. +.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NA 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HH
Confidence 667777777777777777655 333222 122344555666666665555544322 23345544 33
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001637 282 ISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYG 361 (1039)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 361 (1039)
+....-.|-++.++++...++.. ....|-.+ ++.-+.... ...+++.......-
T Consensus 146 illlv~eglwaqllkll~~~Pvs--------------------a~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~ 199 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVS--------------------AWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLV 199 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcc--------------------cccchHHH----HHHHhccCC--chHHHHHHHHHHhh
Confidence 44445556677777776666431 01112111 122222211 12222222222111
Q ss_pred CCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 001637 362 FLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTT 441 (1039)
Q Consensus 362 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 441 (1039)
-.|+..++..++..-.-.|+.+.|..++.+|.+.|+..+..-|..|+-+ .++..-+..+..-|.+.|+.|+..|+..
T Consensus 200 e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 200 EAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred cCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 1467777777777777778888888888888887777776666666654 6666777777777777777777777776
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCcccH----HHHHHHHHHHHhcCChHH-----HHHHHHHHHhCCCCCCHHhHHHH
Q 001637 442 LMDGLFKAGRPSEAEDTFNLILKHNLVSNH----VTYSSLIDGCCKLGDMSA-----AESILQEMEEKHVVPNVITYSSI 512 (1039)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~~~~~l 512 (1039)
-+..+...|....+.+ |.+.+. ..+..+..+......++. ....+....-.|+.....+|...
T Consensus 277 yvip~l~N~~t~~~~e--------~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c 348 (1088)
T KOG4318|consen 277 YVIPQLSNGQTKYGEE--------GSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC 348 (1088)
T ss_pred HHHhhhcchhhhhccc--------ccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH
Confidence 6666666544222221 211111 122222222111111111 01111111112332222333322
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 001637 513 INGYVKKGMLDEAANVMRKMKSQN--IMP-NVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRH 589 (1039)
Q Consensus 513 i~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (1039)
.-....|.-++..++-..+..-- ..+ ++..|..++.-| |.+....- ...++. ...+...+
T Consensus 349 -~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy------------Frr~e~~~---~~~i~~-~~qgls~~ 411 (1088)
T KOG4318|consen 349 -EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY------------FRRIERHI---CSRIYY-AGQGLSLN 411 (1088)
T ss_pred -HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH------------HHHHHhhH---HHHHHH-HHHHHHhh
Confidence 22223555555555555553211 111 122333333332 33222110 011111 11111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHH
Q 001637 590 GKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVY 668 (1039)
Q Consensus 590 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~ 668 (1039)
-..+..-.+-+.+.. ..|+.... .+...... ..+.-.. -..-.+ .+--..-+.++-.+...-+. +++..-
T Consensus 412 l~se~tp~vsell~~--lrkns~lr-~lv~Lss~--Eler~he---~~~~~~-h~irdi~~ql~l~l~se~n~lK~l~~~ 482 (1088)
T KOG4318|consen 412 LNSEDTPRVSELLEN--LRKNSFLR-QLVGLSST--ELERSHE---PWPLIA-HLIRDIANQLHLTLNSEYNKLKILCDE 482 (1088)
T ss_pred hchhhhHHHHHHHHH--hCcchHHH-HHhhhhHH--HHhcccc---cchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111 12222111 00000000 0000000 000000 00112233344444433333 444333
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 001637 669 SGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRN--GIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGF 746 (1039)
Q Consensus 669 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 746 (1039)
+..... .- ...|..|++.+......+.|..+.++.... .+..|..-+..+.+.+.+.+....+..++.++.+.-.
T Consensus 483 ekye~~-lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~ 559 (1088)
T KOG4318|consen 483 EKYEDL-LF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAE 559 (1088)
T ss_pred HHHHHH-Hh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhh
Confidence 332221 01 257889999999999999999999988642 2333556678888889999999999999998876322
Q ss_pred -CC-ChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 001637 747 -SP-TSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYN 824 (1039)
Q Consensus 747 -~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 824 (1039)
.| ...++-.++......|+.+...+.++.+...|+..+ .-++....+.++...|.++++....+ .+|.+..-.
T Consensus 560 n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e 634 (1088)
T KOG4318|consen 560 NEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLE 634 (1088)
T ss_pred CCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHH
Confidence 22 234566677778888999999999998888776542 23444556777888888887776654 444444333
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=4.7e-15 Score=171.48 Aligned_cols=449 Identities=13% Similarity=0.080 Sum_probs=255.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 001637 513 INGYVKKGMLDEAANVMRKMKSQNIMPNV--FIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHG 590 (1039)
Q Consensus 513 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 590 (1039)
+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.. ...+........+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcC
Confidence 334557777777777777777642 332 223 66666667777777777777665 111222223333344555666
Q ss_pred CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHH
Q 001637 591 KMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYS 669 (1039)
Q Consensus 591 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~ 669 (1039)
++++|+++++++++.. +.++..+..++..|...++.++|++.++++.... |+...+..++..+...++. +|++.++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 6666666666666531 1123444555566666666666666666665542 2222332222222223333 5555555
Q ss_pred HHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 001637 670 GMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSP 748 (1039)
Q Consensus 670 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 748 (1039)
++.+. .|+ ...+..+..+..+.|-...|.++..+-... +. ...+..+ +.+.|.+.++- +..+
T Consensus 194 kll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l--------~~~~~a~~vr~----a~~~ 256 (822)
T PRK14574 194 EAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQL--------ERDAAAEQVRM----AVLP 256 (822)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHH--------HHHHHHHHHhh----cccc
Confidence 55554 343 444445555555555555555443321110 01 1111110 00111111111 1000
Q ss_pred ChHhHHHHHHHhhccCC---hhHHHHHHHHHHHc-C-CCccHHH----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 001637 749 TSTTIKILLDTSSKSRR---GDVILQMHERLVDM-G-VRLNQAY----YNSLITILCRLGMTRKATSVLEDMRGRGIMMD 819 (1039)
Q Consensus 749 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~-~-~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 819 (1039)
+. ....+ .+.+..-++.++.. + .++.... ..-.+-++...|++.++++.++.+...+.+..
T Consensus 257 ~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 257 TR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred cc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 00 01111 23344444444431 1 1222122 12234467788889999999999887765544
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCC--------
Q 001637 820 TITYNALMRGYWVSSHINKALATYTQMINEG-----VSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGL-------- 886 (1039)
Q Consensus 820 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------- 886 (1039)
..+-..+..+|...++.++|+.+|+++.... ..++......|..++...+++++|..+++++.+...
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 5567778888888889999999999887642 122333456788888899999999999988886211
Q ss_pred ---CCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 887 ---KPDA---STYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 887 ---~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
.|+. ..+..++..+...|++.+|++.++++.. ..| |...+..+...+...|...+|++.++.+.. +.|+
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~ 482 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPR 482 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCc
Confidence 1222 2233456667788899999999999887 567 888888888889999999999999977777 6775
Q ss_pred -hhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHH
Q 001637 960 -SSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCF 1013 (1039)
Q Consensus 960 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 1013 (1039)
..+....+.+... .+.+.+|..+.+++.+. .|+......+
T Consensus 483 ~~~~~~~~~~~al~------------l~e~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 483 SLILERAQAETAMA------------LQEWHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred cHHHHHHHHHHHHh------------hhhHHHHHHHHHHHHhh--CCCchhHHHH
Confidence 4444444444433 35577888888888763 4665544444
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.6e-15 Score=150.81 Aligned_cols=490 Identities=16% Similarity=0.138 Sum_probs=321.5
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHH
Q 001637 507 ITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFA-ALIDGYFKAGKQEVAFDLYNDLKLVGMEEN----NYILDI 581 (1039)
Q Consensus 507 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ 581 (1039)
.+...|..-|..+....+|+..++-+++....|+.-... .+...+.+...+.+|++.++..+..-...+ ..+++.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344455566666777778888777777766666654332 234566777778888887776654322222 234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------------HHHH
Q 001637 582 FVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFD------------VTAY 649 (1039)
Q Consensus 582 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~ 649 (1039)
+...+.+.|.+++|+..|+...+ ..|+..+-..|+-+++..|+-++..+.|.+|+.....+| ....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 44556778888888888888777 457877777777778888888888888888875422222 2222
Q ss_pred HHHHH-----HHHhcCchHHHHHH---HHHHhcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001637 650 NVLIN-----GLLRHGKCEVQSVY---SGMKEMGLTPDL-ATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNV 720 (1039)
Q Consensus 650 ~~l~~-----~~~~~g~~~a~~~~---~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 720 (1039)
+.-+. -.-+..+..|.+.. .+++.--+.|+- .-+.--+...-.....+.|.+ .-..
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d---------------lei~ 424 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID---------------LEIN 424 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh---------------hhhh
Confidence 21111 11111111122111 111111122221 001000000000011111111 0011
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhc--cCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 001637 721 LVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSK--SRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRL 798 (1039)
Q Consensus 721 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 798 (1039)
-...|.+.|+++.|+++++-+.+..-+..+..-+.+-..+.. -+++..|.++.+.++..+ .-+......-.+.-...
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 234578999999999999988765433333333322222222 346677777777776543 33555555556666778
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 001637 799 GMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLF 878 (1039)
Q Consensus 799 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 878 (1039)
|++++|.+.+++.......- ......+.-.+...|+.++|++.|-++..- +.-+..++..+...|....+..+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999998762221 122222334567889999999999988652 3345777888899999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001637 879 GEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRN 957 (1039)
Q Consensus 879 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 957 (1039)
-++... ++.|+.+...|.+.|-+.|+..+|.+.+-+--. +-| +..+...|..-|....-|++|+.+|+++.- +.
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 988764 566788889999999999999999998877655 445 889999999999999999999999999988 89
Q ss_pred CChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhCCCChHHHHHHHHHHh
Q 001637 958 PNSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSSTFARPGKKADAQRLLQEFY 1034 (1039)
Q Consensus 958 p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~l~~~G~~~eA~~~~~~~~ 1034 (1039)
|+.+-|-.++.+|.+. .|.|.+|..+++....+ ++.|.+....++++....|- ++|.++-+++.
T Consensus 657 p~~~kwqlmiasc~rr-----------sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRR-----------SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred ccHHHHHHHHHHHHHh-----------cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 9999999999888653 45589999999999765 66777788889999988886 66777766554
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=7e-14 Score=161.92 Aligned_cols=439 Identities=11% Similarity=0.042 Sum_probs=200.9
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHH
Q 001637 445 GLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDE 524 (1039)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 524 (1039)
...+.|+++.|+..|++..+.........+ .++..+...|+.++|+..+++...... ........+...|...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 345667777777777666665311111222 566666666777777777666662111 122223333445666677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001637 525 AANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMS 604 (1039)
Q Consensus 525 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 604 (1039)
|+++++++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 777777766653 223445555566666666666666666665543 22233333333333334444445555555555
Q ss_pred cCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCHhHH
Q 001637 605 RGLVP-DRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKCEVQSVYSGMKEMGLTPDLATY 683 (1039)
Q Consensus 605 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~a~~~~~~~~~~~~~p~~~~~ 683 (1039)
. .| +...+..++.+..+.|-...|.++.++-...- +...+..+-. ....+.++.+..|+.
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f---~~~~~~~l~~-----------~~~a~~vr~a~~~~~--- 258 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV---SAEHYRQLER-----------DAAAEQVRMAVLPTR--- 258 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc---CHHHHHHHHH-----------HHHHHHHhhcccccc---
Confidence 3 23 23344555555555555555554444322110 0010000000 000000110000100
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHH-cCCCCCH-HH----HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHH
Q 001637 684 NIMISASCKQG---NLEIAFKLWDEMRR-NGIMPNS-VT----CNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIK 754 (1039)
Q Consensus 684 ~~l~~~~~~~g---~~~~A~~~~~~m~~-~~~~p~~-~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 754 (1039)
.... -.+.|+.-++.+.. -+-.|.. .. ..-.+-++...|++.++++.|+.+...+.+....+..
T Consensus 259 -------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 259 -------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred -------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 0001 12334444444443 1111221 11 1122345556666666666666666555443444555
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHcCC-----CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------
Q 001637 755 ILLDTSSKSRRGDVILQMHERLVDMGV-----RLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGI------------- 816 (1039)
Q Consensus 755 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------- 816 (1039)
.+..+|...+..++|..++..+..... +++......|.-+|...+++++|..+++++.+...
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 555666666666666666666544321 11233344556666666777777777766665210
Q ss_pred CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHH
Q 001637 817 MMDT-ITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPD-ASTY 893 (1039)
Q Consensus 817 ~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 893 (1039)
.||- ..+..++..+...|+..+|.+.++++.. ..| |......+.+++...|.+.+|++.++.+... .|+ ....
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~ 487 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILE 487 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHH
Confidence 0111 1122223334444455555555555444 233 3444444444444455555555544333321 222 2222
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 894 DTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 894 ~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
...+..+...|++.+|.++.+++.+
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3333344444445555444444444
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.5e-12 Score=131.01 Aligned_cols=447 Identities=10% Similarity=0.046 Sum_probs=343.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHH
Q 001637 70 FFCTLIQLYLTCGRFAKASDTFFTMRNFNIIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNV-FTINVLVHSF 148 (1039)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~ 148 (1039)
+|-.-.+.=...+++..|+.+|++++..+ ..++..|-.-+..-.++..+.+|..++++++.. .|-+ ..|...+.+=
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 34444455556788999999999999877 478889999999999999999999999999874 3444 5678888888
Q ss_pred HhcCChHHHHHHHHh-CCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHH
Q 001637 149 CKVGNLSFALDFLRN-VDIDVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWV 227 (1039)
Q Consensus 149 ~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (1039)
-..|++.-|+.+|++ +..+|+..+|++.|.--.+-...+.|..+|++.+-. .|++.+|..-.+.-.+.|.+..|+.+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 889999999999977 588999999999999999999999999999998754 58999999999999999999999999
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHH-------
Q 001637 228 MDNLVNG-G-VCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPD-IVSYNTLISGFCKRGDFVKAKSL------- 297 (1039)
Q Consensus 228 ~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~------- 297 (1039)
|..++.. | -.-+...+++....-.++..++.|.-+|.-.+..=+.-. ...|.....---+-|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9998763 1 122345688888888899999999999988776522211 33555555544455664433322
Q ss_pred -HHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHH
Q 001637 298 -IDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDV-VTYSSIMGG 375 (1039)
Q Consensus 298 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~ 375 (1039)
++.+++ .-+-|-.+|-..+..-...|+.+..+++|+..+..-.+... ..|...|-.
T Consensus 310 qYE~~v~----------------------~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 310 QYEKEVS----------------------KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL 367 (677)
T ss_pred HHHHHHH----------------------hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 222222 12346667777888888889999999999999976322221 122222211
Q ss_pred --------HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001637 376 --------LCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLF----KAGCAMEAFALQSQMMVRGVAFDVVVYTTLM 443 (1039)
Q Consensus 376 --------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 443 (1039)
-....+.+.+.++|+..++. ++...+|+.-+--+|+ ++.++..|.+++...+ |..|-..+|-.-|
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YI 444 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYI 444 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHH
Confidence 12468999999999999884 4556777776665555 5678888999888766 6678888999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHHcCCH
Q 001637 444 DGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKH-VVPNVITYSSIINGYVKKGML 522 (1039)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~ 522 (1039)
..-.+.+.+|.+.++++..++.+ +.+..+|......-...|+.+.|..+|+-.++.. .......|.+.|+.-...|.+
T Consensus 445 elElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 99999999999999999999987 6678889988888888999999999999988763 222356788888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001637 523 DEAANVMRKMKSQNIMPNVFIFAALID 549 (1039)
Q Consensus 523 ~~A~~~~~~~~~~~~~~~~~~~~~li~ 549 (1039)
+.|..+++++++.. +...+|.+...
T Consensus 524 ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 524 EKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 99999999998863 33445665553
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.4e-12 Score=126.56 Aligned_cols=437 Identities=11% Similarity=0.092 Sum_probs=266.5
Q ss_pred hcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 001637 217 RIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKS 296 (1039)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 296 (1039)
..+++..|+.+|++++... .++...|--.+.+-.++..+..|+.++++.+..-+..|. .|...+..--..|+...|++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 3444555555555555433 244555555555555555555555555555543111111 23333333444555555555
Q ss_pred HHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 001637 297 LIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGL 376 (1039)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 376 (1039)
+|+.-.. ..|+...|++.|..-.+...++.|+.+++..+-. .|++.+|......-
T Consensus 163 iferW~~-----------------------w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE 217 (677)
T KOG1915|consen 163 IFERWME-----------------------WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFE 217 (677)
T ss_pred HHHHHHc-----------------------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHH
Confidence 5555543 4455555555555555555555555555555432 35555555555555
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 001637 377 CKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAE 456 (1039)
Q Consensus 377 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 456 (1039)
-++|+...|..+|....+.= .|.. .+...+++....-.++..++.|.
T Consensus 218 ~k~g~~~~aR~VyerAie~~--~~d~-------------------------------~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFL--GDDE-------------------------------EAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHh--hhHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444320 0100 02223334444444555666677
Q ss_pred HHHHHHHHCCCccc--HHHHHHHHHHHHhcCChHHHHH--------HHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHH
Q 001637 457 DTFNLILKHNLVSN--HVTYSSLIDGCCKLGDMSAAES--------ILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAA 526 (1039)
Q Consensus 457 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~--------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 526 (1039)
-+|...+++- +.+ ...|......--+-|+.....+ -++.+.+.++. |-.+|--.+..-...|+.+...
T Consensus 265 ~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 265 FIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHH
Confidence 7776666542 222 3344444444444455433332 24556666554 7788888888888889999999
Q ss_pred HHHHHHHhCCCCCCHH-------HHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH----HhcCCH
Q 001637 527 NVMRKMKSQNIMPNVF-------IFAALIDGY---FKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYL----KRHGKM 592 (1039)
Q Consensus 527 ~~~~~~~~~~~~~~~~-------~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~ 592 (1039)
+++++.... ++|-.. .|.-+-.++ ....+.+.+.++|+..++ -++....++..+.-++ .++.++
T Consensus 343 e~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l 420 (677)
T KOG1915|consen 343 ETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNL 420 (677)
T ss_pred HHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHccc
Confidence 999988875 555321 222222222 346788888899988877 2455555555544444 567888
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHH
Q 001637 593 KEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGM 671 (1039)
Q Consensus 593 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~ 671 (1039)
..|.+++...+. ..|...++...|..-.+.++++....++++.++-+ |.+..+|......-...|++ .|..+|+-+
T Consensus 421 ~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 421 TGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred HHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999888875 67888888888999999999999999999999876 77888888888888888888 888888888
Q ss_pred HhcCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001637 672 KEMGL-TPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLV 722 (1039)
Q Consensus 672 ~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 722 (1039)
+.... ......|.+.|+.-...|.++.|..+|+.+++. .+...+|....
T Consensus 498 i~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 498 ISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred hcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 87532 223567888888888899999999999998874 23344555544
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=3.3e-12 Score=126.91 Aligned_cols=444 Identities=16% Similarity=0.161 Sum_probs=283.5
Q ss_pred HHHcCChhHHHHHHHHhHhCCCCCCHhhHHHHHHH--HHhcCChh-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 001637 78 YLTCGRFAKASDTFFTMRNFNIIPVLPLWNKLIYH--FNASGLVS-QVWIVYTHMISCGVLPNVFTINVLVHSFCKVGNL 154 (1039)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 154 (1039)
...+|.+.++.-++++|...|...+...--.|++. |-.+..+. .-++-|-.|...|- .+..+ .|.|.+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~s--------WK~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSS--------WKSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-ccccc--------cccccH
Confidence 34567777777777777766654443333333322 22222222 22344555544441 12222 244544
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHHHHHhC
Q 001637 155 SFALDFLRNVDIDVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNG 234 (1039)
Q Consensus 155 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (1039)
.+ -+|+- .+....|+..+|.|+|+-...+.|.++|.+........+..+||.+|.+-.- .....+..+|...
T Consensus 196 Ad--L~~E~--~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 196 AD--LLFET--LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQ 267 (625)
T ss_pred HH--HHHhh--cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHh
Confidence 43 23332 2566779999999999999999999999999888778999999999887543 2336778888888
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHHhCCCCCChhhHHHHHHHHHccCCH-HHHHHHHHHHHhcccCCc
Q 001637 235 GVCRDVIGFNILIDGYCKSGDLSSA----LKLMEGMRREGVIPDIVSYNTLISGFCKRGDF-VKAKSLIDEVLGSQKERD 309 (1039)
Q Consensus 235 ~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~ 309 (1039)
...||..|+|+++....+.|+++.| ++++.+|.+-|+.|...+|..+|..+++.++. ..|..++.++...-.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt--- 344 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT--- 344 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc---
Confidence 8999999999999999999988765 56778899999999999999999999998775 446666666654211
Q ss_pred ccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HhHHHHHHHHHHhcCCh
Q 001637 310 ADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYG----FLPD---VVTYSSIMGGLCKCGRL 382 (1039)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~ 382 (1039)
.+.-....+.|..-+.+.++.|.+..+.+-|.++..-..... +.|+ .+.|..+....|+....
T Consensus 345 ----------GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 345 ----------GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred ----------cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 000001112244557777888889999999998876665321 1222 34567788888999999
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001637 383 AEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLI 462 (1039)
Q Consensus 383 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (1039)
+.-...|+.|.-.-.-|+..+..-++++....|.++-.-+++..++..|...+.....-+ +..+
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei----------------l~~L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI----------------LMLL 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH----------------HHHH
Confidence 999999999987666678888888888888888888888888888877644333332222 2233
Q ss_pred HHCCCcccHH---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-C
Q 001637 463 LKHNLVSNHV---TYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNI-M 538 (1039)
Q Consensus 463 ~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~ 538 (1039)
......|+.. -+.....-++. .-.+.....-..+.+... .....+..+-.+.+.|..++|.++|..+.+.+. -
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 3322223222 12222111110 011111222233333333 345567777778888999999988888865442 2
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001637 539 ---PNVFIFAALIDGYFKAGKQEVAFDLYNDLKLV 570 (1039)
Q Consensus 539 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 570 (1039)
|......-+++.-.+.++...|..+++-+...
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 22233334455556667777777777666543
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2.3e-12 Score=128.03 Aligned_cols=427 Identities=15% Similarity=0.159 Sum_probs=275.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--hcCChhhH-HHHHHHHHhCC-----------
Q 001637 331 LITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLC--KCGRLAEA-KMLFREMEKMG----------- 396 (1039)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A-~~~~~~m~~~g----------- 396 (1039)
+.+-|.|+.+. ..|.+.++.-+|+.|...|+..+...-..|...-+ ...+..-| .+-|-.|.+.|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 34556666654 57899999999999999988777665555544322 22222211 12222222221
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCc
Q 001637 397 --------VDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLV 468 (1039)
Q Consensus 397 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (1039)
.+.+..|+.+||.+.|+-...+.|.+++++......+.+..+||.+|.+-.-. ...++..+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 12366788999999999999999999999988887788899999988765433 237888889888889
Q ss_pred ccHHHHHHHHHHHHhcCChHHH----HHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHH-HHHHHHHHHh----CCCC-
Q 001637 469 SNHVTYSSLIDGCCKLGDMSAA----ESILQEMEEKHVVPNVITYSSIINGYVKKGMLDE-AANVMRKMKS----QNIM- 538 (1039)
Q Consensus 469 ~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~- 538 (1039)
||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++..+.. ...+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999987654 5677888888999999999999998888877643 4444444432 2222
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001637 539 ---PNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVG----MEE---NNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLV 608 (1039)
Q Consensus 539 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 608 (1039)
.|..-|...++.|.+..+.+.|.++..-..... +.+ ....|..+....|+....+.-...++.|+-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 244566777788888888888888766554311 122 2344666777788888888888888888876667
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 001637 609 PDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKCEVQSVYSGMKEMGLTPDLATYNIMIS 688 (1039)
Q Consensus 609 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 688 (1039)
|+..+...++++....|.++-.-+++..+..-|...+.... .+++..+....+.|+...-..+-.
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~---------------eeil~~L~~~k~hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR---------------EEILMLLARDKLHPLTPEREQLQV 495 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH---------------HHHHHHHhcCCCCCCChHHHHHHH
Confidence 78888888888888888888888888887776532222221 233444444434444222222221
Q ss_pred HHHhc-CCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CChHhHHHHHHHhhc
Q 001637 689 ASCKQ-GNLEIAFK-LWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFS----PTSTTIKILLDTSSK 762 (1039)
Q Consensus 689 ~~~~~-g~~~~A~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~ll~~~~~ 762 (1039)
+..++ -++.++.+ .-.+|.+. .......+.++-.+.+.|..++|.+++..+.+.+.+ |....+..+......
T Consensus 496 ~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 496 AFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 21111 12222221 22234443 334455677777788999999999998888655432 222233344445555
Q ss_pred cCChhHHHHHHHHHHHc
Q 001637 763 SRRGDVILQMHERLVDM 779 (1039)
Q Consensus 763 ~~~~~~a~~~~~~~~~~ 779 (1039)
.++...|..+++.+...
T Consensus 574 ~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAF 590 (625)
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 55555555555555443
No 39
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.2e-09 Score=118.04 Aligned_cols=782 Identities=12% Similarity=0.136 Sum_probs=383.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 001637 70 FFCTLIQLYLTCGRFAKASDTFFTMRNFNIIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHSFC 149 (1039)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 149 (1039)
.|-.-.+.+...|++.+|..+--..++ ++..+.-+-+..=..=...|....-+..|.-++..| +.|.+----+.+.-.
T Consensus 362 Lfv~rFneLfaqG~Y~eAAkvAAsSPr-gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL 439 (1666)
T KOG0985|consen 362 LFVRRFNELFAQGEYEEAAKVAASSPR-GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVL 439 (1666)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHhCch-hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 355556677788999999888776664 233444455554444455666666777777777766 333332222333333
Q ss_pred hcCChHHHHHHHHh--------CC--C-CCC----------cccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhH
Q 001637 150 KVGNLSFALDFLRN--------VD--I-DVD----------NVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSC 208 (1039)
Q Consensus 150 ~~g~~~~A~~~~~~--------~~--~-~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 208 (1039)
..|+.+.--+++.+ .| + +-| ...-+.++..++..|.+++++-... +.|..||-.
T Consensus 440 ~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~k---KvGyTPdym-- 514 (1666)
T KOG0985|consen 440 QQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAK---KVGYTPDYM-- 514 (1666)
T ss_pred hhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHH---HcCCCccHH--
Confidence 33433333222211 11 0 001 0112346677888888887765554 347777643
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh------------
Q 001637 209 NILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIV------------ 276 (1039)
Q Consensus 209 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~------------ 276 (1039)
.+++...+ -..++|.++.-.+.... +...-.+.+++.+......+.+..++-...+. ..||.-
T Consensus 515 -flLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~LQTrLLE~NL~ 589 (1666)
T KOG0985|consen 515 -FLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEGHLQTRLLEMNLV 589 (1666)
T ss_pred -HHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhhhHHHHHHHHHhc
Confidence 34444444 45666666666555522 22333555666666666666665555444432 122222
Q ss_pred ------------------hHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHH--
Q 001637 277 ------------------SYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTT-- 336 (1039)
Q Consensus 277 ------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 336 (1039)
-|-.+.+.|.+.|-+..|++.+..... +...++ .+.
T Consensus 590 ~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~D-----------------------IKR~vV-hth~L 645 (1666)
T KOG0985|consen 590 HAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYD-----------------------IKRVVV-HTHLL 645 (1666)
T ss_pred cchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHH-----------------------HHHHHH-HhccC
Confidence 134445555555555555555544432 111110 111
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC-----------CCCCCHH
Q 001637 337 ---LISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKM-----------GVDPNHV 402 (1039)
Q Consensus 337 ---li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g~~~~~~ 402 (1039)
-+-.|.-.-.++++.++++.|+..++..|..+...+..-|+..=-.+.-.++|+..... ++.-|+.
T Consensus 646 ~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpe 725 (1666)
T KOG0985|consen 646 NPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPE 725 (1666)
T ss_pred CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCch
Confidence 01122223345555555555555555445444444444444433333344444433221 1122333
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH------------HCCCccc
Q 001637 403 SYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLIL------------KHNLVSN 470 (1039)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~~~~~~ 470 (1039)
.....|.+.++.|++.+..++-++---. | ++....++.+.. +.++.+|
T Consensus 726 vh~KYIqAA~kt~QikEvERicresn~Y----d----------------pErvKNfLkeAkL~DqlPLiiVCDRf~fVhd 785 (1666)
T KOG0985|consen 726 VHFKYIQAACKTGQIKEVERICRESNCY----D----------------PERVKNFLKEAKLTDQLPLIIVCDRFDFVHD 785 (1666)
T ss_pred HHHHHHHHHHhhccHHHHHHHHhccccC----C----------------HHHHHHHHHhccccccCceEEEecccccHHH
Confidence 3333444445555544444433221000 0 000000000000 0011122
Q ss_pred HHHH------HHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----------CHHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001637 471 HVTY------SSLIDGCCKLGDMSAAESILQEMEEKHVVP-----------NVITYSSIINGYVKKGMLDEAANVMRKMK 533 (1039)
Q Consensus 471 ~~~~------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 533 (1039)
.+.| .-.|..|.+.=+..+.-.+...++...+.- .......|+.-.-+.+++.--...++...
T Consensus 786 lvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i 865 (1666)
T KOG0985|consen 786 LVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLI 865 (1666)
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2211 112223333222222222222222211110 00111234444455666666777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhcCC
Q 001637 534 SQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVD------MMSRGL 607 (1039)
Q Consensus 534 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~ 607 (1039)
..|.. |..++++|...|..+++-.+-. +..+++.-...+.-||...+..-|.-.+++ ++. +
T Consensus 866 ~eG~~-d~a~hnAlaKIyIDSNNnPE~f----------LkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~--v 932 (1666)
T KOG0985|consen 866 QEGSQ-DPATHNALAKIYIDSNNNPERF----------LKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELIN--V 932 (1666)
T ss_pred hccCc-chHHHhhhhheeecCCCChHHh----------cccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHH--h
Confidence 77765 7888888888887665433211 011111111222223322222111111100 000 0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHH-----------HHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCch-HHHHHHHHHHh
Q 001637 608 VPDRVNYTSLMDGFFKVGKETAA-----------LNIAQEMTEKNIP--FDVTAYNVLINGLLRHGKC-EVQSVYSGMKE 673 (1039)
Q Consensus 608 ~~~~~~~~~l~~~~~~~g~~~~A-----------~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~ 673 (1039)
......|....+-..+..+.+.- +.+.++.....+| .|+......+.++...+-. +..++++++.-
T Consensus 933 cNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL 1012 (1666)
T KOG0985|consen 933 CNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVL 1012 (1666)
T ss_pred cCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 11112223333333333332221 2233334333332 3455556666677777776 77777777664
Q ss_pred cCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH
Q 001637 674 MGL--TPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTST 751 (1039)
Q Consensus 674 ~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 751 (1039)
.+. .-+...-|.|+-.-.+ -+.....++.+++.+.. .|+ +.......+-+++|..+|++. ..+..
T Consensus 1013 ~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~ 1079 (1666)
T KOG0985|consen 1013 DNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF-----DMNVS 1079 (1666)
T ss_pred CCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh-----cccHH
Confidence 321 1112223333322222 23344455555554432 122 233445566678888887765 22333
Q ss_pred hHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001637 752 TIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYW 831 (1039)
Q Consensus 752 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 831 (1039)
....++. ..++.+.|.++.++. ..+.+|..+..+-.+.|...+|++-|-+.- |+..|..+++...
T Consensus 1080 A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVAS 1144 (1666)
T ss_pred HHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHH
Confidence 4444333 234555555554443 245788888888888888888887775542 6778888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 001637 832 VSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQ 911 (1039)
Q Consensus 832 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 911 (1039)
+.|.+++-+.++.-..+..-.|... ..|+-+|.+.+++.|-++++ ..|+......+++-|...|.++.|.-
T Consensus 1145 ~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl 1215 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKL 1215 (1666)
T ss_pred hcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHH
Confidence 8888888887776666655556443 34677788888877755543 35777777778888888888877766
Q ss_pred HHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 001637 912 IYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCE 972 (1039)
Q Consensus 912 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 972 (1039)
+|... +.|.-|...+...|+++.|....+++-. .-||--+-.+|.+
T Consensus 1216 ~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns------~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1216 LYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANS------TKTWKEVCFACVD 1261 (1666)
T ss_pred HHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccc------hhHHHHHHHHHhc
Confidence 66543 4566677777778888888776665543 3355555555554
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3e-12 Score=129.67 Aligned_cols=221 Identities=14% Similarity=0.090 Sum_probs=172.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCC
Q 001637 792 ITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGS 870 (1039)
Q Consensus 792 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 870 (1039)
+..+.-+|+.-.|..-|+..++....+ ...|--+...|....+.++....|++..+ +.| ++.+|..-..+..-.++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHH
Confidence 344566789999999999998864332 23377777789999999999999999888 777 47788888888888899
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHH
Q 001637 871 TKEVDDLFGEMKKRGLKP-DASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLK 949 (1039)
Q Consensus 871 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 949 (1039)
+++|..-|++.++. .| +...|-.+.-++.+.++++++...|++.+++ ++.-+.+|+.....+...+++++|.+.|+
T Consensus 410 ~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 410 YEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 99999999999873 44 3455655666677889999999999999885 66678899999999999999999999999
Q ss_pred HHHHCCCCCC-------hhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChh-hHHHHHHHhhCCC
Q 001637 950 EMQARGRNPN-------SSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCES-TQTCFSSTFARPG 1021 (1039)
Q Consensus 950 ~~~~~g~~p~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~l~~~G 1021 (1039)
++.+ +.|+ +.++..- +..-. +| .+++.+|.++++++.+. .|-.+ +|..|+.+..++|
T Consensus 487 ~ai~--LE~~~~~~~v~~~plV~K--a~l~~-qw--------k~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 487 KAIE--LEPREHLIIVNAAPLVHK--ALLVL-QW--------KEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRG 551 (606)
T ss_pred HHHh--hccccccccccchhhhhh--hHhhh-ch--------hhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHh
Confidence 9999 7776 1111111 11100 11 25578899999999875 46666 8999999999999
Q ss_pred ChHHHHHHHHHH
Q 001637 1022 KKADAQRLLQEF 1033 (1039)
Q Consensus 1022 ~~~eA~~~~~~~ 1033 (1039)
+.+||++++++.
T Consensus 552 ~i~eAielFEks 563 (606)
T KOG0547|consen 552 KIDEAIELFEKS 563 (606)
T ss_pred hHHHHHHHHHHH
Confidence 999999999954
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=4.7e-09 Score=110.52 Aligned_cols=601 Identities=13% Similarity=0.126 Sum_probs=348.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCccccccc
Q 001637 236 VCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKA 315 (1039)
Q Consensus 236 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 315 (1039)
..|....|-.+-+.+ +.++....+|. ..|...+..+.++|++..-+..|+..+..-|
T Consensus 77 ~~~T~~~~~~vn~c~------er~lv~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp--------- 133 (835)
T KOG2047|consen 77 LCPTDPAYESVNNCF------ERCLVFMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALP--------- 133 (835)
T ss_pred cCCCChHHHHHHHHH------HHHHHHHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCc---------
Confidence 344555555443333 34444444443 3577777788888888888888888886322
Q ss_pred ccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 001637 316 DNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKM 395 (1039)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 395 (1039)
+.-...+|...+.-....|-.+-+..+++.-++- ++..-.-.|..+++.+++++|.+.+......
T Consensus 134 -----------vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~ 198 (835)
T KOG2047|consen 134 -----------VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQ 198 (835)
T ss_pred -----------hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCc
Confidence 2223445777777777778888888888888865 4444666777888888888888888776532
Q ss_pred C------CCCCHHHHHHHHHHHHhcCCHhHH---HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 001637 396 G------VDPNHVSYTTLIDSLFKAGCAMEA---FALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHN 466 (1039)
Q Consensus 396 g------~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (1039)
. .+.+...|..+-+..+++.+.-.. -.+++.+..+-..--...|++|.+-|.+.|.+++|..+|++.+..
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~- 277 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT- 277 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 1 123555676666666665443322 233333333211112357888888889999999999988887764
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHH-HhCCCCCCHHHH
Q 001637 467 LVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEK-HVVPNVITYSSIINGYVKKGMLDEAANVMRKM-KSQNIMPNVFIF 544 (1039)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~ 544 (1039)
.....-|+.+-+.|++-.+-.-+..+ +...+. +-.-+...+...+..+-.. .+.--.++... +.+ .+-++..|
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~dl~~~~a~~e~l--m~rr~~~lNsVlLRQ-n~~nV~eW 352 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDVDLELHMARFESL--MNRRPLLLNSVLLRQ-NPHNVEEW 352 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhhhHHHHHHHHHHH--HhccchHHHHHHHhc-CCccHHHH
Confidence 22333455566666543221111111 100011 1111111111111111100 00000011111 122 22345556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HhhHHH
Q 001637 545 AALIDGYFKAGKQEVAFDLYNDLKLVG-----MEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPD---RVNYTS 616 (1039)
Q Consensus 545 ~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 616 (1039)
..-+.. ..|+..+-...+.+..+.- +-.-...|..+...|..+|+++.|..+|++..+...+.- ..+|..
T Consensus 353 ~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~ 430 (835)
T KOG2047|consen 353 HKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA 430 (835)
T ss_pred Hhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 555443 4566777777777776531 111235677788888899999999999998887433221 246666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 001637 617 LMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQGN 695 (1039)
Q Consensus 617 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 695 (1039)
-..+-.+..+++.|+++++..... |.... ..+...+.. .+ .++ .+...|...++.--..|-
T Consensus 431 waemElrh~~~~~Al~lm~~A~~v--P~~~~------~~~yd~~~pvQ~-rlh---------rSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRATHV--PTNPE------LEYYDNSEPVQA-RLH---------RSLKIWSMYADLEESLGT 492 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhcC--CCchh------hhhhcCCCcHHH-HHH---------HhHHHHHHHHHHHHHhcc
Confidence 677777888888898888877654 32222 112222222 11 111 135567777777778889
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH-hHHHHHHHhhc---cCChhHHHH
Q 001637 696 LEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTST-TIKILLDTSSK---SRRGDVILQ 771 (1039)
Q Consensus 696 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~---~~~~~~a~~ 771 (1039)
++....+|+.+++..+. ++.......--+-...-++++.++|++-+..=.-|+.. .|+..+.-+.+ ....+.++.
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99999999999885543 33332333334456667889999888855332234433 56665554432 246788899
Q ss_pred HHHHHHHcCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001637 772 MHERLVDMGVRLNQA--YYNSLITILCRLGMTRKATSVLEDMRGRGIMMD--TITYNALMRGYWVSSHINKALATYTQMI 847 (1039)
Q Consensus 772 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 847 (1039)
+|+++++ |.+|... .|-.-...=.+.|-...|++++++.... +++. ...||..|.--...=-+....++|++.+
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 9999988 5555332 2222223333457777888888887654 4333 3467766654333333455677788877
Q ss_pred HCCCCCChh---HHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCC
Q 001637 848 NEGVSPNTA---TYNILLGIFLGTGSTKEVDDLFGEMKK-RGLKPDASTYDTLISGHAKIGN 905 (1039)
Q Consensus 848 ~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~ 905 (1039)
+ +-|+.. ...-..+.=++.|..+.|..++....+ ....-+...|.+.-.-=.+.|+
T Consensus 650 e--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 650 E--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred H--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 7 455422 222344566778888888888887766 2333355667766666667887
No 42
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=7.1e-09 Score=109.21 Aligned_cols=654 Identities=12% Similarity=0.084 Sum_probs=366.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCcccHHHHHHHH
Q 001637 101 PVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHSFCKVGNLSFALDFLRNVDIDVDNVTYNTVIWGL 180 (1039)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~ 180 (1039)
-++.+|-.-|..-.. .-...-..+|+++++. ++.+--.|...+..=.. ..+ ...|....|..+=+++
T Consensus 25 ~svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~~---------~vk--~~~~T~~~~~~vn~c~ 91 (835)
T KOG2047|consen 25 FSVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARRA---------QVK--HLCPTDPAYESVNNCF 91 (835)
T ss_pred hhHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHH---------Hhh--ccCCCChHHHHHHHHH
Confidence 467777777765433 2223455677777654 34444556555532100 000 1123333333332222
Q ss_pred HhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHH
Q 001637 181 CEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGV-CRDVIGFNILIDGYCKSGDLSSA 259 (1039)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 259 (1039)
+.++-....| +..|..-+....+.|++..-+..|++++..-| ......|...+......|-++.+
T Consensus 92 ------er~lv~mHkm--------pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets 157 (835)
T KOG2047|consen 92 ------ERCLVFMHKM--------PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETS 157 (835)
T ss_pred ------HHHHHHHhcC--------CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHH
Confidence 2222222222 45677777778889999999999999877532 23345699999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHH
Q 001637 260 LKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLIS 339 (1039)
Q Consensus 260 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 339 (1039)
..+|.+-++. .| ..-...|.-+++.+++++|.+.+..++.... +.. ..-+.+...|.-+-+
T Consensus 158 ~rvyrRYLk~--~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~-----------f~s----k~gkSn~qlw~elcd 218 (835)
T KOG2047|consen 158 IRVYRRYLKV--AP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDE-----------FVS----KKGKSNHQLWLELCD 218 (835)
T ss_pred HHHHHHHHhc--CH--HHHHHHHHHHHhccchHHHHHHHHHhcCchh-----------hhh----hcccchhhHHHHHHH
Confidence 9999999874 33 3467778888999999999999999875211 111 112345566777777
Q ss_pred HHHhcCCHHHH---HHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001637 340 AYCKQQALEEA---LGLYEEMVKYGFLPD--VVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKA 414 (1039)
Q Consensus 340 ~~~~~g~~~~A---~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 414 (1039)
..+++-+.-.. ..+++.+... -+| -..|++|.+-|.+.|.++.|..+|++.+.. ...+.-|+.+.++|++-
T Consensus 219 lis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHH
Confidence 76665443332 2334444332 344 467999999999999999999999998764 23455566666766653
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CChhHHHHHHHH-HHHCCCcccHHHHHHHHHHHHhcCChHHHH
Q 001637 415 GCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKA--GRPSEAEDTFNL-ILKHNLVSNHVTYSSLIDGCCKLGDMSAAE 491 (1039)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 491 (1039)
....-+..+=-.-.+.+-.-+...+...+..+-.. ++.- +.+. ++..+ +.++..|..-+.. ..|+..+-.
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~----~lNsVlLRQn-~~nV~eW~kRV~l--~e~~~~~~i 367 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL----LLNSVLLRQN-PHNVEEWHKRVKL--YEGNAAEQI 367 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch----HHHHHHHhcC-CccHHHHHhhhhh--hcCChHHHH
Confidence 32222211110000111111222222211111110 0000 0111 11111 3445556555443 356677777
Q ss_pred HHHHHHHhCCCCC------CHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 001637 492 SILQEMEEKHVVP------NVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPN---VFIFAALIDGYFKAGKQEVAFD 562 (1039)
Q Consensus 492 ~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~ 562 (1039)
..+.++... +.| -...|..+...|-.+|+++.|..+|++..+...+-- ..+|..-.+.-.++.+++.|++
T Consensus 368 ~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 368 NTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 888877764 222 234688889999999999999999999887543211 2345555555667778888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001637 563 LYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNI 642 (1039)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 642 (1039)
+.+........+. ..+...+..-++. +--+...|...++.--..|-++....+++++.+..+
T Consensus 447 lm~~A~~vP~~~~--------~~~yd~~~pvQ~r----------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 447 LMRRATHVPTNPE--------LEYYDNSEPVQAR----------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHhhhcCCCchh--------hhhhcCCCcHHHH----------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 8777654322221 0111222211111 112345677777777777888888888888887653
Q ss_pred CCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 001637 643 PFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPD-LATYNIMISASCK---QGNLEIAFKLWDEMRRNGIMPNSVT 717 (1039)
Q Consensus 643 ~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~ 717 (1039)
.. +.........+-.+..+ ++.+++++-+..=.-|+ ...|+..+..+.+ ...++.|+.+|++.++ |.+|...-
T Consensus 509 aT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aK 586 (835)
T KOG2047|consen 509 AT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAK 586 (835)
T ss_pred CC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHH
Confidence 32 22222222222233333 67777766555432344 4456666555443 3467888888888888 55554322
Q ss_pred HHHHH--HHHHccCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHH---HHHH
Q 001637 718 CNVLV--GGLVGFGEIEKAMDVLNDMLVWGFSPTS--TTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQA---YYNS 790 (1039)
Q Consensus 718 ~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 790 (1039)
+.-|+ ..=-+.|....|+.+++++.. +.++.. ..|+..+.-....=-....+.+|+++++. -|+.. ..-.
T Consensus 587 tiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclr 663 (835)
T KOG2047|consen 587 TIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLR 663 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHH
Confidence 22221 112245777888888888754 333322 24555554333333334456677777665 23322 2333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 001637 791 LITILCRLGMTRKATSVLEDMRGR-GIMMDTITYNALMRGYWVSSH 835 (1039)
Q Consensus 791 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 835 (1039)
..++=.+.|..+.|..++.-..+. ....+..-|.+--.--.++|+
T Consensus 664 FAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 455666777777777777665543 122234556655555556666
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.9e-11 Score=126.69 Aligned_cols=285 Identities=11% Similarity=0.032 Sum_probs=228.2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 001637 678 PDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILL 757 (1039)
Q Consensus 678 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 757 (1039)
-+........+-+...+++.+..++++...+.. ++....+..-|.++.+.|+..+-..+=.++++ ..+....+|..+.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-LYPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH-hCCCCCcchhhHH
Confidence 355566667778889999999999999998752 44555666667789999998888888888875 3344567898888
Q ss_pred HHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 001637 758 DTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHIN 837 (1039)
Q Consensus 758 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 837 (1039)
--|...++..+|++++.+....+ +.=...|-..+..|+-.|..++|...+....+. .+-.-..+--+..-|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 88888899999999999987753 223458899999999999999999999887764 1112223333555788899999
Q ss_pred HHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHhccCCHHHHH
Q 001637 838 KALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKR--GLKP----DASTYDTLISGHAKIGNKKESI 910 (1039)
Q Consensus 838 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~ 910 (1039)
.|-+.|.+... +.| |+..++-+.-+....+.+.+|..+|+..++. ...+ -..+++.|++++.+++.+++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999888 788 5888888888888899999999999988731 1111 2346789999999999999999
Q ss_pred HHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 001637 911 QIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCE 972 (1039)
Q Consensus 911 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 972 (1039)
..+++.+. ..| |..++.+++..|...|+.+.|++.|.+.+. +.||..+...++..+.+
T Consensus 476 ~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999998 566 889999999999999999999999999999 99988776666665443
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.2e-12 Score=128.01 Aligned_cols=215 Identities=14% Similarity=0.139 Sum_probs=125.0
Q ss_pred cCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001637 763 SRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALAT 842 (1039)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 842 (1039)
.|+...+.+-++.+++.... +...|--+..+|....+.++-.+.|++....+ +.++.+|..-.+.+.-.+++++|+.-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 45555566666666654321 22235556666667777777777777666653 23556666666666666667777777
Q ss_pred HHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 001637 843 YTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGY 921 (1039)
Q Consensus 843 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 921 (1039)
|++.+. +.|. ...|.-+.-+..+.++++++...|++.++. ++.-+..|+.....+..+++++.|.+.|+.+++ +
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--L 491 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--L 491 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--h
Confidence 777666 5564 555666666666666777777777776653 444455666666666677777777777776666 4
Q ss_pred ccC-------hH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHH
Q 001637 922 VPK-------TS--TYNVLIGDFAKEGKMHQARELLKEMQARGRNP-NSSTYDILIGGWCELSNEPELDRTLILSYRAEA 991 (1039)
Q Consensus 922 ~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 991 (1039)
+|+ +. +.-+++- +.-.+++.+|.+++.++++ +.| -...|.+|+..-. ++|..++|
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~l------------Q~~~i~eA 556 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFEL------------QRGKIDEA 556 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHH------------HHhhHHHH
Confidence 553 11 1111111 1123566677777777766 666 2444545543322 34445666
Q ss_pred HHHHHHHH
Q 001637 992 KKLFMEMN 999 (1039)
Q Consensus 992 ~~~~~~~~ 999 (1039)
.++|++..
T Consensus 557 ielFEksa 564 (606)
T KOG0547|consen 557 IELFEKSA 564 (606)
T ss_pred HHHHHHHH
Confidence 66666654
No 45
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.60 E-value=2.3e-09 Score=115.79 Aligned_cols=129 Identities=17% Similarity=0.142 Sum_probs=105.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHH
Q 001637 892 TYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN-SSTYDILIGG 969 (1039)
Q Consensus 892 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 969 (1039)
.|....+.+.+.++.++|..-+.++.. +.| ....|+..+..+...|++++|.+.|..++. +.|| +.....++-.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 455667778899999999988888877 566 778888888999999999999999999999 8996 5577788888
Q ss_pred HhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhCCCChHHHHHHHHHHhh
Q 001637 970 WCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSSTFARPGKKADAQRLLQEFYK 1035 (1039)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~l~~~G~~~eA~~~~~~~~~ 1035 (1039)
+.+.|+. . ..+...+++.|.+.+ +-++++|+.+|.++-+.|+.++|-+.+....+
T Consensus 728 lle~G~~-~---------la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 728 LLELGSP-R---------LAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhCCc-c---------hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8887742 2 245556899998865 34466999999999999999999999996654
No 46
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.8e-08 Score=107.26 Aligned_cols=732 Identities=15% Similarity=0.131 Sum_probs=375.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 001637 71 FCTLIQLYLTCGRFAKASDTFFTMRNFNIIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHSFCK 150 (1039)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 150 (1039)
-...+..|+.+|.+++++-... +.|..|+ |-.+|+...+ -.++.+.++...|.+...+ ..-.+.+...+..
T Consensus 484 p~KVi~cfAE~Gqf~KiilY~k---KvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~~--~~die~I~DlFme 554 (1666)
T KOG0985|consen 484 PAKVIQCFAETGQFKKIILYAK---KVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEEP--LADIEQIVDLFME 554 (1666)
T ss_pred cHHHHHHHHHhcchhHHHHHHH---HcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCCC--cccHHHHHHHHHH
Confidence 5567889999999998876543 4556665 4556666666 5778888887777763321 1222333332222
Q ss_pred cCChHHHHH-------------------HHHhC-CCCC------------CcccHHHHHHHHHhcCchhHHHHHHHHHHH
Q 001637 151 VGNLSFALD-------------------FLRNV-DIDV------------DNVTYNTVIWGLCEQGLANQGFGLLSIMVK 198 (1039)
Q Consensus 151 ~g~~~~A~~-------------------~~~~~-~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 198 (1039)
.+....+.. +++.. -..| ...-|..+...|.++|....|++.|.....
T Consensus 555 ~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~D 634 (1666)
T KOG0985|consen 555 LNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYD 634 (1666)
T ss_pred HHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHH
Confidence 222221111 11110 0001 122367777889999999999977765532
Q ss_pred CC---CCcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 001637 199 NG---ISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRRE------ 269 (1039)
Q Consensus 199 ~g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 269 (1039)
.. +..+...--.++.-+ -.-.++++...+..|+..+.+.|....-.+..-|+..=-.+.-.++|+....-
T Consensus 635 IKR~vVhth~L~pEwLv~yF-g~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yf 713 (1666)
T KOG0985|consen 635 IKRVVVHTHLLNPEWLVNYF-GSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYF 713 (1666)
T ss_pred HHHHHHHhccCCHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHH
Confidence 11 000111111223333 33456778888888888777777777766777777666666666676665431
Q ss_pred -----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccc------cCCCcccCCChhhHH---
Q 001637 270 -----GVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFEN------ENGNVEVEPNLITHT--- 335 (1039)
Q Consensus 270 -----g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--- 335 (1039)
++.-|....-..|.+-|+.|.+.+..++-++----.+++.....+...+.+ ...+.++.+|.+.|-
T Consensus 714 LgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrn 793 (1666)
T KOG0985|consen 714 LGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN 793 (1666)
T ss_pred HHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHh
Confidence 234455555567888999999999888765532212221111111111100 011122222322221
Q ss_pred ---HHHHHHH----------------------------------------------hcCCHHHHHHHHHHHHHCCCCCCH
Q 001637 336 ---TLISAYC----------------------------------------------KQQALEEALGLYEEMVKYGFLPDV 366 (1039)
Q Consensus 336 ---~li~~~~----------------------------------------------~~g~~~~A~~~~~~~~~~g~~~~~ 366 (1039)
..|..|. +.+++.--...++..+..|.. |.
T Consensus 794 n~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~ 872 (1666)
T KOG0985|consen 794 NLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DP 872 (1666)
T ss_pred hHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-ch
Confidence 1122222 223333333344444444433 45
Q ss_pred hHHHHHHHHHHhcCChhhHH-H---HHH------HHHhCCCC-------------------CCHHHHHHHHHHHHhcCCH
Q 001637 367 VTYSSIMGGLCKCGRLAEAK-M---LFR------EMEKMGVD-------------------PNHVSYTTLIDSLFKAGCA 417 (1039)
Q Consensus 367 ~~~~~li~~~~~~g~~~~A~-~---~~~------~m~~~g~~-------------------~~~~~~~~li~~~~~~g~~ 417 (1039)
.++|+|...|...++-.+-. + .|+ -..++++. .....|....+-+.+..+.
T Consensus 873 a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~ 952 (1666)
T KOG0985|consen 873 ATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDP 952 (1666)
T ss_pred HHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccCh
Confidence 55555555544433221110 0 000 00000000 0000011111111111111
Q ss_pred hH-----------HHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCc--ccHHHHHHHHHHHH
Q 001637 418 ME-----------AFALQSQMMVRGVA--FDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLV--SNHVTYSSLIDGCC 482 (1039)
Q Consensus 418 ~~-----------A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~ 482 (1039)
+- -.++.+++.+.+++ -|+......+.++...+-+.+-+++++++.-.+.. -+...-+.|+-.-.
T Consensus 953 ~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi 1032 (1666)
T KOG0985|consen 953 DLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI 1032 (1666)
T ss_pred HHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh
Confidence 10 01112222221110 12222233333444444444444444443321100 01111112221111
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001637 483 KLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFD 562 (1039)
Q Consensus 483 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 562 (1039)
+ -+..+..+..+++..-+. | .+......++-+++|..+|++.- .+..+...|++ .-+..+.|.+
T Consensus 1033 k-ad~trVm~YI~rLdnyDa-~------~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1033 K-ADRTRVMEYINRLDNYDA-P------DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYE 1096 (1666)
T ss_pred h-cChHHHHHHHHHhccCCc-h------hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHH
Confidence 1 122233333333222110 0 12233444555666666665532 23344444443 2344555555
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001637 563 LYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNI 642 (1039)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 642 (1039)
.-++. ..+..|..+..+-.+.|.+.+|++-+-+. .|+..|..+++...+.|.+++-.+.+....++..
T Consensus 1097 fAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1097 FAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 44432 24567888888888888888888766544 4677888888999999999998888887777654
Q ss_pred CCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001637 643 PFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVL 721 (1039)
Q Consensus 643 ~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 721 (1039)
.|.+. ..++-+|++.++. +..+.. .-|+..-...+.+-|...|.++.|.-+|... .-|..+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~L 1226 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKL 1226 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHH
Confidence 44443 4677788888876 554443 2477777788888888888888887777544 347778
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcC
Q 001637 722 VGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRL--NQAYYNSLITILCRLG 799 (1039)
Q Consensus 722 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 799 (1039)
...++..|++..|.+.-+++ .+..+|..+-.+|...+.+..|.- .|+.. ...-...|+..|...|
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQi-------CGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQI-------CGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHh-------cCceEEEehHhHHHHHHHHHhcC
Confidence 88889999999888876664 356689988888887776654432 22222 3344567889999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHH
Q 001637 800 MTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFG 879 (1039)
Q Consensus 800 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 879 (1039)
-+++-+.+++...... ...--.|+-|.-.|.+- ++++-.+.++-.-.. .-.--++.++-.+..|.|..-+|.
T Consensus 1294 yFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~ 1365 (1666)
T KOG0985|consen 1294 YFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYD 1365 (1666)
T ss_pred cHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765431 11233455555555543 344444444332221 111124445555555555544444
Q ss_pred H
Q 001637 880 E 880 (1039)
Q Consensus 880 ~ 880 (1039)
+
T Consensus 1366 ~ 1366 (1666)
T KOG0985|consen 1366 K 1366 (1666)
T ss_pred h
Confidence 3
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.7e-13 Score=143.46 Aligned_cols=280 Identities=14% Similarity=0.105 Sum_probs=201.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC-ChHhHHHHHHHhhccCChhHHHHH
Q 001637 695 NLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWG-FSP-TSTTIKILLDTSSKSRRGDVILQM 772 (1039)
Q Consensus 695 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 772 (1039)
+..+|+..|..+..+ +.-.......+..+|...+++++|..+|+.+.+.. ... +..+|...+.-.. +.-+.-.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHH
Confidence 345666666664332 12223445556666666666666666666665321 111 2234444443221 11111122
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 001637 773 HERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMM-DTITYNALMRGYWVSSHINKALATYTQMINEGV 851 (1039)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 851 (1039)
...+++. -+..+.+|-+++++|.-+++.+.|++.|++.... .| ...+|+-++.-+.....+|.|...|+..+. +
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 2233333 1446789999999999999999999999999875 34 578888888888888899999999999887 6
Q ss_pred CCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHH
Q 001637 852 SPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPD-ASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTY 928 (1039)
Q Consensus 852 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 928 (1039)
.|+ ...|..++-+|.++++++.|+-.|+++++ +.|. .+....++..+-+.|+.|+|+.+++++.. ++| |+..-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~ 560 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCK 560 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhH
Confidence 664 56777788899999999999999999997 4454 45556777788899999999999999998 777 77777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhC
Q 001637 929 NVLIGDFAKEGKMHQARELLKEMQARGRNPN-SSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEK 1001 (1039)
Q Consensus 929 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 1001 (1039)
...+..+...+++++|+..++++.+ +.|+ ..++..++..|-+.|+ .+.|...|.-|.+.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~------------~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGN------------TDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHcc------------chHHHHhhHHHhcC
Confidence 7788888899999999999999999 8885 6677777777776655 46788888888664
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.1e-10 Score=115.88 Aligned_cols=364 Identities=13% Similarity=0.114 Sum_probs=215.5
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H
Q 001637 570 VGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDV--T 647 (1039)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 647 (1039)
.+...|...+-.....+.+.|....|+..|...+.. -+..|.+-+....-..+.+.+..+. . +.+.+. .
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~----~-~l~~~~h~M 228 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILV----V-GLPSDMHWM 228 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHH----h-cCcccchHH
Confidence 344555666666666677788888888887777652 2233433333322222222222211 1 112211 1
Q ss_pred HHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Q 001637 648 AYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIM--PNSVTCNVLVGG 724 (1039)
Q Consensus 648 ~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~ 724 (1039)
.---+..++...... ++.+-.+.....|+.-....-+....+.....+++.|+.+|+++.+...- .|..+|..++-
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY- 307 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY- 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH-
Confidence 111223333333333 56666666666665544444444445566677888888888888775211 14566666553
Q ss_pred HHccCCHHHHHHHHHHHHh--CCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 001637 725 LVGFGEIEKAMDVLNDMLV--WGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTR 802 (1039)
Q Consensus 725 ~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 802 (1039)
++..+.. +.++-+-.- ..++| .|...+.+-|+-.++.++|..+|+++++.+ +....+|+.++.-|....+..
T Consensus 308 -v~~~~sk--Ls~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 308 -VKNDKSK--LSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred -HHhhhHH--HHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccH
Confidence 3322211 112211111 12222 344455566666677778888888877753 235567777778888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHH
Q 001637 803 KATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEM 881 (1039)
Q Consensus 803 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 881 (1039)
.|++.++...+. .+.|-..|..++++|.-.+-..=|+-+|++... .+| |...|..|+.+|.+.++.++|++.|..+
T Consensus 382 AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 382 AAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 888888888776 344777888888888888778888888888777 666 4777888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----C-CccC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 882 KKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITK----G-YVPK-TSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 882 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
...|- -+...+..|...+-+.++.++|.+.|++.++. | ..|. ....--|..-+.+.+++++|..+..+...
T Consensus 459 i~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 459 ILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred Hhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 76542 24456667777888888888888887776652 1 1121 11111244556667777777766655544
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=3.5e-12 Score=140.35 Aligned_cols=290 Identities=12% Similarity=0.011 Sum_probs=187.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHH
Q 001637 691 CKQGNLEIAFKLWDEMRRNGIMPN-SVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVI 769 (1039)
Q Consensus 691 ~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 769 (1039)
...|+++.|.+.+.+..+. .|+ ...+-....+..+.|+++.|.+++.++.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~-------------------------- 146 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE-------------------------- 146 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------
Confidence 3456777777666665553 233 23333444555566666666666666543
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001637 770 LQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINE 849 (1039)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 849 (1039)
....+...+.-....++...|+++.|...++++.+.. +.++..+..+...+...|++++|.+.+.++.+.
T Consensus 147 ---------~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 147 ---------LAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred ---------hCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 2111122233345667777888888888888887763 335667777788888888888888888888876
Q ss_pred CCCCChhHHHHHHHH---HHcCCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc
Q 001637 850 GVSPNTATYNILLGI---FLGTGSTKEVDDLFGEMKKRG---LKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP 923 (1039)
Q Consensus 850 ~~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 923 (1039)
+..+.......-..+ ....+..+++.+.+..+.+.. .+.+...+..++..+...|+.++|.+.+++.+++ .|
T Consensus 217 ~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~p 294 (409)
T TIGR00540 217 GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LG 294 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CC
Confidence 543322211111111 123333344444555555421 1136777888888999999999999999999983 45
Q ss_pred ChHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-h--hhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHH
Q 001637 924 KTST---YNVLIGDFAKEGKMHQARELLKEMQARGRNPN-S--STYDILIGGWCELSNEPELDRTLILSYRAEAKKLFME 997 (1039)
Q Consensus 924 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 997 (1039)
|... ...........++.+++++.+++.++ ..|+ + ....++++.+.+.| .+++|.++|++
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~------------~~~~A~~~le~ 360 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHG------------EFIEAADAFKN 360 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcc------------cHHHHHHHHHH
Confidence 4432 12222233345788999999999998 6775 4 45667777776554 47899999996
Q ss_pred HHhCCCCCChhhHHHHHHHhhCCCChHHHHHHHHHHh
Q 001637 998 MNEKGFVPCESTQTCFSSTFARPGKKADAQRLLQEFY 1034 (1039)
Q Consensus 998 ~~~~~~~p~~~~~~~l~~~l~~~G~~~eA~~~~~~~~ 1034 (1039)
+......|+.+.+.++++++.+.|+.++|.++|++.+
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4443456999988899999999999999999999653
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.57 E-value=4.5e-09 Score=113.64 Aligned_cols=437 Identities=12% Similarity=0.079 Sum_probs=234.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001637 469 SNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALI 548 (1039)
Q Consensus 469 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 548 (1039)
.|...|..|.-+...+|+++.+.+.|++....-+. ....|+.+...|...|.-..|..++++-......|+..+--.++
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 34555555555666666666666666665543222 45566666666666666666666666554432223333322222
Q ss_pred H-HHH-hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---
Q 001637 549 D-GYF-KAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFK--- 623 (1039)
Q Consensus 549 ~-~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 623 (1039)
. .|. +.+.+++++++-.++...... +.+. -.+..|..+.-+|..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~--------------~~~~-----------------l~~~~~l~lGi~y~~~A~ 448 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGG--------------QRSH-----------------LKPRGYLFLGIAYGFQAR 448 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhh--------------hhhh-----------------hhhhHHHHHHHHHHhHhh
Confidence 2 222 244555555554444331000 0000 001111111111110
Q ss_pred --------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 001637 624 --------VGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQG 694 (1039)
Q Consensus 624 --------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 694 (1039)
.....+++..+++..+.+ +.|+.+...+.--|+..++. .|.+...+..+.+-.-+...|..+.-.+...+
T Consensus 449 ~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 449 QANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 111344556666666554 44444444444455666666 66666666666644456777777777777777
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHH
Q 001637 695 NLEIAFKLWDEMRR-NGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMH 773 (1039)
Q Consensus 695 ~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 773 (1039)
++.+|+.+.+...+ .|. |......-+..-...++.++|+.....++.. |...-. ....++-....+..
T Consensus 528 r~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~~-~q~~~~~g~~~~lk 596 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEYG-VQQTLDEGKLLRLK 596 (799)
T ss_pred hhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhhh-Hhhhhhhhhhhhhh
Confidence 77777777776654 211 1111111122222356677777666665431 000000 00000000011111
Q ss_pred HHHHHcCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHH
Q 001637 774 ERLVDMGVRL--NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMD------TITYNALMRGYWVSSHINKALATYTQ 845 (1039)
Q Consensus 774 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 845 (1039)
..+.-.--.+ .+.++..+.......+........+...... ..|+ ...|......+...++.++|...+.+
T Consensus 597 ~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 597 AGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred cccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 1110000011 1223333332222111110000001111111 1122 12455566677888889999888888
Q ss_pred HHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHH--HHHHHHHCCC
Q 001637 846 MINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPD-ASTYDTLISGHAKIGNKKESIQ--IYCEMITKGY 921 (1039)
Q Consensus 846 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~ 921 (1039)
... +.| ....|...+..+...|.++||.+.|..+.. +.|+ ..+..++..++.+.|+..-|.. ++.++++ +
T Consensus 676 a~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~ 749 (799)
T KOG4162|consen 676 ASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--L 749 (799)
T ss_pred HHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--h
Confidence 776 556 467777777888889999999999998886 4454 4567788889999998777777 9999998 7
Q ss_pred cc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001637 922 VP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNP 958 (1039)
Q Consensus 922 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 958 (1039)
+| +...|..|+..+.+.|+.++|-+.|+-..+ +.+
T Consensus 750 dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q--Le~ 785 (799)
T KOG4162|consen 750 DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ--LEE 785 (799)
T ss_pred CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh--hcc
Confidence 78 789999999999999999999999999988 665
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.8e-10 Score=116.40 Aligned_cols=331 Identities=11% Similarity=0.043 Sum_probs=239.4
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCC-C-HhHH
Q 001637 606 GLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKCEVQSVYSGMKEMGLTP-D-LATY 683 (1039)
Q Consensus 606 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~a~~~~~~~~~~~~~p-~-~~~~ 683 (1039)
+..-|...+-...-.+.+.|....|++.|...... .|..-.+|..|...... .+........ ... + .-.-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit~------~e~~~~l~~~-l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELITD------IEILSILVVG-LPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhch------HHHHHHHHhc-CcccchHHHH
Confidence 34455555555556778899999999999988875 35555555555443321 2222222222 111 1 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CC-ChHhHHHHHHHhh
Q 001637 684 NIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGF-SP-TSTTIKILLDTSS 761 (1039)
Q Consensus 684 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~ll~~~~ 761 (1039)
..+..++......++++.-.......|+..+...-+....+.....++++|+..|+++.+... +. |..++..++-.-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 234566777778899998888888888776666666666677788999999999999987521 11 3446655554332
Q ss_pred ccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001637 762 KSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALA 841 (1039)
Q Consensus 762 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 841 (1039)
..... + -+...+...+ +-.+.+.-.+++-|.-.++.+.|+..|++..+.+ +.-...|+-+++-|...++...|++
T Consensus 311 ~~skL--s-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSKL--S-YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHHH--H-HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 22221 1 1111121111 2244566677888889999999999999999863 2246789999999999999999999
Q ss_pred HHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 001637 842 TYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKG 920 (1039)
Q Consensus 842 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 920 (1039)
.|+.+++ +.| |...|..|+++|.-.+...=|+-.|+++.+. .+-|...|.+|+++|.+.++.++|++-|.+++.-|
T Consensus 386 sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 386 SYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999998 778 6899999999999999999999999999984 24578899999999999999999999999998743
Q ss_pred CccChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 921 YVPKTSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 921 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
+.+...+..|+..|.+.++.++|...|++-++
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33568889999999999999999999998877
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.5e-14 Score=151.13 Aligned_cols=232 Identities=16% Similarity=0.234 Sum_probs=102.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLG 863 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 863 (1039)
+...|..+..+....+++++|+..++++...+.. ++..+..++.. ...+++++|++++.+..+. .+++..+...+.
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~ 118 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQ 118 (280)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHH
Confidence 4556666777777788888888888888765322 44556666655 5778888888888776653 355666777778
Q ss_pred HHHcCCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCH
Q 001637 864 IFLGTGSTKEVDDLFGEMKKR-GLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKM 941 (1039)
Q Consensus 864 ~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 941 (1039)
.+...|+++++.++++++.+. ..+.+...|..+...+.+.|+.++|++.++++++ ..| |+...+.++..+...|+.
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 119 LYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCh
Confidence 888888888888888887752 2345667777888888889999999999999888 677 577788888888888998
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhCCC
Q 001637 942 HQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSSTFARPG 1021 (1039)
Q Consensus 942 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~l~~~G 1021 (1039)
+++.++++...+.. +.|+..+..++.++...|+ .++|..+++++.+.. +.|..+..+++++|.+.|
T Consensus 197 ~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~------------~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 197 DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGR------------YEEALEYLEKALKLN-PDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-------------HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccc------------ccccccccccccccc-cccccccccccccccccc
Confidence 88888888888742 3466677777777765544 688999999887642 345667789999999999
Q ss_pred ChHHHHHHHHHHhh
Q 001637 1022 KKADAQRLLQEFYK 1035 (1039)
Q Consensus 1022 ~~~eA~~~~~~~~~ 1035 (1039)
+.++|.++.+++.+
T Consensus 263 ~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 263 RKDEALRLRRQALR 276 (280)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 99999998886543
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.8e-10 Score=110.57 Aligned_cols=439 Identities=11% Similarity=0.107 Sum_probs=251.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001637 479 DGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQE 558 (1039)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 558 (1039)
.++...|++++|...+.-+.+.. .++...+..|...+.-.|.+.+|..+..+..+ +...-..|...-.+.++-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHH
Confidence 44455556666665555554432 33445555555555555555555555443322 2222223333334445544
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHH-HHHHHHhcCCHHHHHHHHHHH
Q 001637 559 VAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTS-LMDGFFKVGKETAALNIAQEM 637 (1039)
Q Consensus 559 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 637 (1039)
+-..+.+.+... ..---.+.......-.+.+|+.++...+.. .|+....+. +.-+|.+..-++-+.+++.-.
T Consensus 139 ~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 139 RILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 444443333221 111112222233334566677777666652 244333333 334667777777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCC
Q 001637 638 TEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCK-----QGNLEIAFKLWDEMRRNGI 711 (1039)
Q Consensus 638 ~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~ 711 (1039)
... +|.+..+.|.......+.=.. .+..-.+.+.+.+-. . |- .+.-.++ -.+-+.|++++-.+.+.
T Consensus 212 L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~-- 283 (557)
T KOG3785|consen 212 LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH-- 283 (557)
T ss_pred HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--
Confidence 665 455566666555444332222 222222333222110 0 11 1112222 23456677777666542
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhh-----ccCChhHHHHHHHHHHHcCCCccH-
Q 001637 712 MPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSS-----KSRRGDVILQMHERLVDMGVRLNQ- 785 (1039)
Q Consensus 712 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~- 785 (1039)
.|. .-..++--|.+.++..+|..+.+++. +..|-...+..+..+.. .....+.|.+.+..+-+.+...|.
T Consensus 284 IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 284 IPE--ARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred ChH--hhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 333 33345556788999999998888764 44555555555544332 223356677888887766655543
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH-HHHHHH
Q 001637 786 AYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATY-NILLGI 864 (1039)
Q Consensus 786 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~ 864 (1039)
.-..++...+.-..++++.+..++.+...-...|..-+ .+.++++..|++.+|.++|-++....++ |..+| ..|..+
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArC 437 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARC 437 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHH
Confidence 34556677777778899999999998876444444444 4788999999999999999887653333 34455 456678
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHH
Q 001637 865 FLGTGSTKEVDDLFGEMKKRGLKPDASTY-DTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQ 943 (1039)
Q Consensus 865 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 943 (1039)
|.+.++.+-|++++-++- .+.+..+. ..+...|.+++.+--|-+.|+.+.. .+|++..|. |+--.
T Consensus 438 yi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe---------GKRGA 503 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE---------GKRGA 503 (557)
T ss_pred HHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC---------Cccch
Confidence 899999999988776653 33344443 3445568899999999999988876 789888875 44445
Q ss_pred HHHHHHHHHHCCCCC
Q 001637 944 ARELLKEMQARGRNP 958 (1039)
Q Consensus 944 A~~~~~~~~~~g~~p 958 (1039)
+..+|..+....-.|
T Consensus 504 CaG~f~~l~~~~~~~ 518 (557)
T KOG3785|consen 504 CAGLFRQLANHKTDP 518 (557)
T ss_pred HHHHHHHHHcCCCCC
Confidence 556777766643334
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.5e-10 Score=120.22 Aligned_cols=505 Identities=14% Similarity=0.093 Sum_probs=309.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001637 332 ITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSL 411 (1039)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 411 (1039)
.-+..++.-+..+.++.-|.-+-++....+..|+..-| +++++.-.|+++.|..+...-.-. ..|..+..-....+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~--~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW--LAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH--HHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence 34555566566667788888777777766655555544 567788888888888777554322 24777777778888
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHH
Q 001637 412 FKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAE 491 (1039)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 491 (1039)
.+..+++.|..++...... -++..+-.-=. ...-..+.+.+....-.+ ...+-.-...|....+.++|.
T Consensus 93 ~~lk~~~~al~vl~~~~~~---~~~f~yy~~~~--~~~l~~n~~~~~~~~~~e------ssic~lRgk~y~al~n~~~ar 161 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVE---TNPFSYYEKDA--ANTLELNSAGEDLMINLE------SSICYLRGKVYVALDNREEAR 161 (611)
T ss_pred HHHHHHHHHHHHhcccchh---hcchhhcchhh--hceeccCcccccccccch------hceeeeeeehhhhhccHHHHH
Confidence 8888888888877643111 01111100000 000011111110000000 001111123444556677777
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001637 492 SILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVG 571 (1039)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 571 (1039)
..+.+.... |...+.++...-.. ..-.+.+.|+.+... |..+. ...+.+.-..+|+-.....
T Consensus 162 ~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l----~~a~~--------~~ed~e~l~~lyel~~~k~ 223 (611)
T KOG1173|consen 162 DKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESL----DLAML--------TKEDVERLEILYELKLCKN 223 (611)
T ss_pred HHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcc----cHHhh--------hhhHHHHHHHHHHhhhhhh
Confidence 777777665 44444333222111 111222223222221 11100 0000111111111000000
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001637 572 MEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNV 651 (1039)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 651 (1039)
..... ..+.++ ..+ .+..-+........+-+...+++.+..++.+.+.+.+ |+....+..
T Consensus 224 ~n~~~---------~~r~~~--------~sl--~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~ 283 (611)
T KOG1173|consen 224 RNEES---------LTRNED--------ESL--IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPL 283 (611)
T ss_pred ccccc---------cccCch--------hhh--hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHH
Confidence 00000 000000 111 1234455666666777777888888888888888875 777777777
Q ss_pred HHHHHHhcCch-HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc
Q 001637 652 LINGLLRHGKC-EVQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPN-SVTCNVLVGGLVGF 728 (1039)
Q Consensus 652 l~~~~~~~g~~-~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 728 (1039)
-|..+...|+. +...+=.++++. -|+ +.+|.++...|...|+.++|++.|.+.... .|. ...|.....+|.-.
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhc
Confidence 77777788877 766777777775 565 788888888888889999999999887653 333 55788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChH-hHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 001637 729 GEIEKAMDVLNDMLVWGFSPTST-TIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSV 807 (1039)
Q Consensus 729 g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 807 (1039)
|..++|+..+..+-+. -|-.. -...+.--|...++.+.|.+++..+.... +.|+.+.+-++-+....+.+.+|..+
T Consensus 360 ~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred chHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHH
Confidence 8999998888777542 22222 22333445777888999999998888752 44888899998888889999999999
Q ss_pred HHHHHhC--CCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHH
Q 001637 808 LEDMRGR--GIM----MDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGE 880 (1039)
Q Consensus 808 ~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 880 (1039)
|+..... .+. .-..+++.|+.+|.+.+.+++|+..|++.+. ..| +..++.+++-++...|.++.|.+.|.+
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 9887621 011 1234688899999999999999999999998 566 588889999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHH
Q 001637 881 MKKRGLKPDASTYDTLISGH 900 (1039)
Q Consensus 881 ~~~~~~~p~~~~~~~l~~~~ 900 (1039)
.+- +.|+......++..+
T Consensus 515 aL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 515 ALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHh--cCCccHHHHHHHHHH
Confidence 885 678876666555543
No 55
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.54 E-value=1.1e-07 Score=101.57 Aligned_cols=193 Identities=20% Similarity=0.189 Sum_probs=132.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001637 338 ISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCA 417 (1039)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 417 (1039)
|.+-.....+.+|+.+++.+.... .-...|.-+.+.|+..|+++.|.++|-+.- .++..|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 444456678888888888877542 123346677788999999999999886642 256678899999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001637 418 MEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEM 497 (1039)
Q Consensus 418 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 497 (1039)
++|.++-.+.. |.+.....|.+-..-+-+.|++.+|++++-.+. .|+ .-|.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 99988866553 445456667777777778888888888775443 233 2367888888888887777654
Q ss_pred HhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001637 498 EEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLY 564 (1039)
Q Consensus 498 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 564 (1039)
... .-..|...+..-|-..|++..|..-|-+.. -|.+-++.|-..+.|++|.++-
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 221 123455566777778888888887765443 2455566677777777776554
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=3.1e-12 Score=135.55 Aligned_cols=282 Identities=13% Similarity=0.055 Sum_probs=214.5
Q ss_pred HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 001637 663 EVQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNG--IMPNSVTCNVLVGGLVGFGEIEKAMDVLN 739 (1039)
Q Consensus 663 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 739 (1039)
+|...|.++-.. .++ ..+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+.-+-+. -++.++.
T Consensus 337 ~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 337 EALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 566666664333 233 4566677888889999999999999887631 111566777777655332 2223332
Q ss_pred HHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 001637 740 DMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRL-NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMM 818 (1039)
Q Consensus 740 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 818 (1039)
+-+-.--+..+.+|..+..+|+-+++.+.|+..+++++.. +| ...+|+.++.-+.....++.|...|+..+... +.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~r 487 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PR 487 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-ch
Confidence 2221122335678999999999999999999999999885 55 66788888889999999999999999998752 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001637 819 DTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLI 897 (1039)
Q Consensus 819 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 897 (1039)
+.-+|.-++..|.+.++++.|.-.|+++++ +.|. .+....+...+-+.|+.|+|+++++++.....+ ++..---.+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 456777888899999999999999999999 8895 666677888899999999999999999874322 332222345
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 898 SGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 898 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
..+...+++++|+..++++.+ +.| +..++..++..|.+.|+.+.|+.-|--|.+ ++|..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg 624 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKG 624 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCcc
Confidence 567789999999999999998 788 678888899999999999999999999998 77754
No 57
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.54 E-value=8.4e-09 Score=114.12 Aligned_cols=381 Identities=11% Similarity=0.022 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHh----cC----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccH
Q 001637 400 NHVSYTTLIDSLFK----AG----CAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNH 471 (1039)
Q Consensus 400 ~~~~~~~li~~~~~----~g----~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 471 (1039)
+..+|..++.-|.+ .| +...|+..+.+.++..-. +..+|+.|.-. ...|.+.-|...|-...... +...
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccch
Confidence 35566666655554 11 223566777766655333 66677776655 55567777777665554443 4566
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCCCCHHHHHHH
Q 001637 472 VTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMK----SQNIMPNVFIFAAL 547 (1039)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l 547 (1039)
.+|..+.-.+.+..+++.|...|.......+. |...|--........|+.-++..+|..-- ..|-.++..-|...
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 78888888888899999999999988877554 67777666666667788888888887632 22334455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH---------cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHhhHH--
Q 001637 548 IDGYFKAGKQEVAFDLYNDLKL---------VGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSR-GLVPDRVNYT-- 615 (1039)
Q Consensus 548 i~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~-- 615 (1039)
.......|+.++-+...+++.. .+.+.....|.+.+....+.+.+++|.++..+.+.- ...-|...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5555667776665554444322 234555666777777777777777777666654431 0112333333
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCC-CCC-HhHHHHHHHHH
Q 001637 616 --SLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGL-TPD-LATYNIMISAS 690 (1039)
Q Consensus 616 --~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~-~p~-~~~~~~l~~~~ 690 (1039)
...+.++..|.++.|...+...... .+..+...-+..+. .+++ +..+.|+++...-- +.+ ++....++-..
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l~lFf-kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~ 1085 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDLTLFF-KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCM 1085 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhHHHHH-HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHH
Confidence 3444566667777665544332211 11122222222222 3344 67777777665321 223 23334444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---C-CCCChHhHHHHHHHhhccCCh
Q 001637 691 CKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVW---G-FSPTSTTIKILLDTSSKSRRG 766 (1039)
Q Consensus 691 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-~~p~~~~~~~ll~~~~~~~~~ 766 (1039)
...+.-+.|...+-+..... +|+..+.-.+...+.-..+-.....+.+++.+. . +.-+..... -..+..+++-
T Consensus 1086 g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~--e~i~~~~~r~ 1162 (1238)
T KOG1127|consen 1086 GLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLK--ELIYALQGRS 1162 (1238)
T ss_pred hhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHH--HHHHHHhhhh
Confidence 55666666666555554421 334443333333332222222222222222211 0 101111111 1124456666
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHH
Q 001637 767 DVILQMHERLVDMGVRLNQAYYNSLI 792 (1039)
Q Consensus 767 ~~a~~~~~~~~~~~~~~~~~~~~~l~ 792 (1039)
..+.+.+.+..... +.|+.+|..|-
T Consensus 1163 ~~vk~~~qr~~h~~-P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1163 VAVKKQIQRAVHSN-PGDPALWSLLS 1187 (1238)
T ss_pred HHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 67777777776642 34666666543
No 58
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.53 E-value=9.3e-09 Score=113.79 Aligned_cols=665 Identities=11% Similarity=0.017 Sum_probs=352.7
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 001637 221 VKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDE 300 (1039)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 300 (1039)
...|...|-+.++..+ .=...|+.|..-|+..-+...|.+.|++..+.+. .|..++......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5555556655555322 2246788999999888888899999999887543 2666888888999999999999888433
Q ss_pred HHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 001637 301 VLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCG 380 (1039)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 380 (1039)
.-+..+ ...-...|.-..-.|.+.++...|..-|+...+..+. |...|..++.+|..+|
T Consensus 552 ~~qka~--------------------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 552 AAQKAP--------------------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESG 610 (1238)
T ss_pred Hhhhch--------------------HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcC
Confidence 332111 0001112333344466778888899889888887544 7788899999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCChh
Q 001637 381 RLAEAKMLFREMEKMGVDPNH-VSYTTLIDSLFKAGCAMEAFALQSQMMVRG------VAFDVVVYTTLMDGLFKAGRPS 453 (1039)
Q Consensus 381 ~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~l~~~~~~~g~~~ 453 (1039)
++..|+++|.+.... +|+. ..-.-.....+..|.+.+|+..+....... ..--..++..+...+.-.|-..
T Consensus 611 ry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ 688 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQK 688 (1238)
T ss_pred ceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999888765 3332 222222334567788888888887776531 1111223333333333334444
Q ss_pred HHHHHHHHHH-------HCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCH---H
Q 001637 454 EAEDTFNLIL-------KHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGML---D 523 (1039)
Q Consensus 454 ~A~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~ 523 (1039)
.|...++..+ .+....+...|..+.+ |..+|-... .. .|+......+..-.-..+.. +
T Consensus 689 kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d 756 (1238)
T KOG1127|consen 689 KAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKND 756 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchh
Confidence 4444444333 2222223333333322 233333332 11 12222222222212222221 1
Q ss_pred ---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 001637 524 ---EAANVMRKMKSQNIMPNVFIFAALIDGYFK----A----GKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKM 592 (1039)
Q Consensus 524 ---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 592 (1039)
-|.+.+-.-++ ...+..+|..++..|.+ . .+...|+..+.+..+.. ..+...|+.+.- ....|.+
T Consensus 757 ~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnv 832 (1238)
T KOG1127|consen 757 LLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNV 832 (1238)
T ss_pred HHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchh
Confidence 11222211111 11234455555444333 1 12235666666655431 223344444433 3555677
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHH
Q 001637 593 KEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGM 671 (1039)
Q Consensus 593 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~ 671 (1039)
.-|...|-+.... .+....+|..+.-.+.+..+.+-|...|....... |.+...|..........|+. +...+|..-
T Consensus 833 a~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs 910 (1238)
T KOG1127|consen 833 ACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHS 910 (1238)
T ss_pred hhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 7776666655542 22355688888888888999999999998888775 77777887777666777777 777776652
Q ss_pred H----hcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 001637 672 K----EMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRR---------NGIMPNSVTCNVLVGGLVGFGEIEKAMDVL 738 (1039)
Q Consensus 672 ~----~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 738 (1039)
. ..|-.|+...|..........|+.++-+..-+.+.. .+.+.....|.......-..+.+++|.+..
T Consensus 911 ~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela 990 (1238)
T KOG1127|consen 911 DELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELA 990 (1238)
T ss_pred HHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2 223345555555555555666766655444333211 123334667777777777778888887777
Q ss_pred HHHHhC-CCCCChHh----HHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001637 739 NDMLVW-GFSPTSTT----IKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRG 813 (1039)
Q Consensus 739 ~~~~~~-~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 813 (1039)
.+++.. ..+-+... -..+...+...|+++.|......... ..+......-+. ..-.|+++++.+.|++...
T Consensus 991 ~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLs 1066 (1238)
T KOG1127|consen 991 TRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALS 1066 (1238)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhh
Confidence 765421 00111122 22233334444555544333222111 001111111111 1335677777888777764
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHH
Q 001637 814 R-GIMMD-TITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDAS 891 (1039)
Q Consensus 814 ~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 891 (1039)
. .-..| ++....++......+.-+.|...+-+.+.. .+|+..+...+.-++.-..+-.....+.+++.... .....
T Consensus 1067 is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~-k~e~~ 1144 (1238)
T KOG1127|consen 1067 ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLL-KLEWF 1144 (1238)
T ss_pred hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhh-hhHHh
Confidence 3 11223 233344444455666667777766666653 33444444444333332223222223333333210 00000
Q ss_pred HHH---HHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHH
Q 001637 892 TYD---TLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFA 936 (1039)
Q Consensus 892 ~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 936 (1039)
+|. ..=..|.+.|+-.-..+.+++.+. +-| |+..|..|-..|+
T Consensus 1145 ~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h--~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1145 CWPPGLLKELIYALQGRSVAVKKQIQRAVH--SNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred ccChhHHHHHHHHHhhhhHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 110 111125567777777777777776 445 7777776654443
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=4.8e-14 Score=147.40 Aligned_cols=260 Identities=16% Similarity=0.234 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhcc
Q 001637 685 IMISASCKQGNLEIAFKLWDEMRRNGIMP-NSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKS 763 (1039)
Q Consensus 685 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 763 (1039)
.+...+.+.|++++|++++++.......| +...|..+.......+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555666666666666664433322112 3334444444555566666666666666543221 22233333333 355
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001637 764 RRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRG-IMMDTITYNALMRGYWVSSHINKALAT 842 (1039)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 842 (1039)
++.++|.++.....+. .+++..+...+..|...|+++++..+++++.... .+.++..|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555544433 2344555566666777777777777777765432 234566666777777777777777777
Q ss_pred HHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 001637 843 YTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGY 921 (1039)
Q Consensus 843 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 921 (1039)
|++.++ ..|+ ......++..+...|+.+++.++++...+.. +.+...+..+..++...|+.++|+.+|++..+ .
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~ 243 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--L 243 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--H
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--c
Confidence 777776 5564 5566667777777777777766666665431 33334555666677777777777777777766 3
Q ss_pred cc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 922 VP-KTSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 922 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
.| |+.+...+..++...|+.++|..+.+++.+
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 45 666666677777777777777777766554
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=7e-11 Score=129.25 Aligned_cols=282 Identities=11% Similarity=0.063 Sum_probs=200.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHH--HHHHHhhccCChhHH
Q 001637 693 QGNLEIAFKLWDEMRRNGIMPNSVT-CNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIK--ILLDTSSKSRRGDVI 769 (1039)
Q Consensus 693 ~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a 769 (1039)
.|+++.|.+......+.. +++.. +.....+..+.|+++.|.+++.++.+ ..|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 578888877666654431 12222 33334444677888888888888764 344443222 234566777888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHH
Q 001637 770 LQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDT-------ITYNALMRGYWVSSHINKALAT 842 (1039)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~ 842 (1039)
...++++.+.. +.++.+...+..+|.+.|+|++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887764 446788889999999999999999999999987554222 1233333333344445566666
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCc
Q 001637 843 YTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYV 922 (1039)
Q Consensus 843 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 922 (1039)
+++.-+. .+.++.....+..++...|+.++|.+++++..+. +|+..... +.+....++.+++++.+++..+ -.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk--~~ 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIK--QH 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHh--hC
Confidence 6665432 3346778888999999999999999999999873 45554332 2233356999999999999998 45
Q ss_pred c-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHh
Q 001637 923 P-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNE 1000 (1039)
Q Consensus 923 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 1000 (1039)
| |+..+..++..+.+.|+|++|.+.|+++++ ..|+..++..+...+...|+ .++|..++++.+.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~------------~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHK------------PEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHh
Confidence 6 677788999999999999999999999999 78999888888888877666 4677777776643
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=2.7e-07 Score=98.12 Aligned_cols=230 Identities=18% Similarity=0.140 Sum_probs=120.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001637 334 HTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFK 413 (1039)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 413 (1039)
+..++..| ..+++...+.+.+.+++. ..-...|.....-.++..|+.++|....+...+.++. +.+.|..+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 34444444 556777777777776663 2222333333333456677777777777666664433 55667666666666
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHH
Q 001637 414 AGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESI 493 (1039)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (1039)
..++++|++.|......+.. |...|.-+.-.-.+.|+++.....-....+.. +.....|..++.++--.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777776666544 55555555555555566665555555554432 23344566666666666666666666
Q ss_pred HHHHHhCC-CCCCHHhHHHHHH------HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 494 LQEMEEKH-VVPNVITYSSIIN------GYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYND 566 (1039)
Q Consensus 494 ~~~~~~~~-~~~~~~~~~~li~------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 566 (1039)
.++..+.. -.|+...+..... ...+.|..++|.+.+..-... +......-..-.+.+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 66655542 1234433332222 223445555555544433322 111111122223444445555555555544
Q ss_pred HHH
Q 001637 567 LKL 569 (1039)
Q Consensus 567 ~~~ 569 (1039)
++.
T Consensus 245 Ll~ 247 (700)
T KOG1156|consen 245 LLE 247 (700)
T ss_pred HHh
Confidence 443
No 62
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=1.2e-10 Score=128.24 Aligned_cols=292 Identities=11% Similarity=0.022 Sum_probs=156.1
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHH
Q 001637 413 KAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAES 492 (1039)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (1039)
..|+++.|.+.+.+..+.... ....+-....+..+.|+.+.|.+.+....+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456666666666555544322 2233334445555666667776666666554312222233334566666777777777
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHH
Q 001637 493 ILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFA-ALIDGY---FKAGKQEVAFDLYNDLK 568 (1039)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~g~~~~a~~~~~~~~ 568 (1039)
.++.+.+..+. +..++..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.+.+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777766544 5566666777777777777777777777666433 222221 111111 11111111222222222
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001637 569 LVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTA 648 (1039)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 648 (1039)
...... ...+...+..+...+...|+.++|.+++++..+.. |.+...
T Consensus 253 ~~~p~~--------------------------------~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~ 299 (409)
T TIGR00540 253 KNQPRH--------------------------------RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAI 299 (409)
T ss_pred HHCCHH--------------------------------HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccc
Confidence 111000 01244455555555566666666666666655542 222211
Q ss_pred HHHHHHH--HHhcCch-HHHHHHHHHHhcCCCCC-H--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001637 649 YNVLING--LLRHGKC-EVQSVYSGMKEMGLTPD-L--ATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLV 722 (1039)
Q Consensus 649 ~~~l~~~--~~~~g~~-~a~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 722 (1039)
...++.. ....++. .+.+.++...+. .|+ + ....++...+.+.|++++|.+.|+........|+...+..+.
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 0011111 1222333 555555555554 444 3 456677788888888888888888544333467777777888
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 001637 723 GGLVGFGEIEKAMDVLNDML 742 (1039)
Q Consensus 723 ~~~~~~g~~~~A~~~~~~~~ 742 (1039)
..+.+.|+.++|.+++++.+
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888887754
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=1.7e-10 Score=126.16 Aligned_cols=282 Identities=12% Similarity=0.097 Sum_probs=152.2
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHH--HHHHHHHHHHhcCChHHHH
Q 001637 414 AGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHV--TYSSLIDGCCKLGDMSAAE 491 (1039)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~ 491 (1039)
.|+++.|.+.+.......-.| ...+........+.|+++.|.+.+.++.+.. |+.. ........+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555544432111 2223333334466677777777777776543 3322 2223356667777777777
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 001637 492 SILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVF-------IFAALIDGYFKAGKQEVAFDLY 564 (1039)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~ 564 (1039)
..++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777776654 66677777777777777777777777777665432221 1222222222222333333333
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001637 565 NDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPF 644 (1039)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 644 (1039)
+.+... .+. ++.....+...+...|+.++|.+++++..+. ++
T Consensus 253 ~~lp~~-~~~-----------------------------------~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 253 KNQSRK-TRH-----------------------------------QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred HhCCHH-HhC-----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 332211 122 3334444444455555555555555444442 23
Q ss_pred CHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001637 645 DVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLV 722 (1039)
Q Consensus 645 ~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 722 (1039)
+.... ++.+....++. ++.+..+...+. .|+ ...+..+...+.+.+++++|.+.|+.+.+. .|+..++..+.
T Consensus 295 ~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 295 DERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred CHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 32111 11111222444 444444444443 343 555666777777777777777777777763 56777777777
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 001637 723 GGLVGFGEIEKAMDVLNDMLV 743 (1039)
Q Consensus 723 ~~~~~~g~~~~A~~~~~~~~~ 743 (1039)
..+.+.|+.++|.+++++.+.
T Consensus 369 ~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 369 DALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777777776643
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2e-10 Score=110.68 Aligned_cols=292 Identities=17% Similarity=0.154 Sum_probs=211.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCCh
Q 001637 252 KSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNL 331 (1039)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1039)
-..+.++|..+|-+|.+.... ...+--+|.+.|-+.|..+.|++++.....+.. .....-.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd------------------lT~~qr~ 107 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD------------------LTFEQRL 107 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC------------------CchHHHH
Confidence 357889999999999985321 333667899999999999999999999986311 0011112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH----HHHHH
Q 001637 332 ITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHV----SYTTL 407 (1039)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~l 407 (1039)
.....|..-|...|-+|.|+.+|..+...|- --......|+..|-+..+|++|+++-+++.+.+..+..+ .|.-|
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 3445577788999999999999999987532 134566778999999999999999999998876655432 46666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCCh
Q 001637 408 IDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDM 487 (1039)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 487 (1039)
...+....+.+.|..++.+..+.... .+.+-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 67777778889999999998887554 55566677788888899999999999988887555566788888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHH
Q 001637 488 SAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKA---GKQEVAFDLY 564 (1039)
Q Consensus 488 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~ 564 (1039)
++....+..+.+... ....-..+........-.+.|...+.+-+.+ .|+...+..+++.-... |...+...++
T Consensus 266 ~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~l 341 (389)
T COG2956 266 AEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLL 341 (389)
T ss_pred HHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHH
Confidence 999988888877633 3333444444444445556666666555543 58888888888765432 3344444455
Q ss_pred HHHH
Q 001637 565 NDLK 568 (1039)
Q Consensus 565 ~~~~ 568 (1039)
..|.
T Consensus 342 r~mv 345 (389)
T COG2956 342 RDMV 345 (389)
T ss_pred HHHH
Confidence 5544
No 65
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=8.7e-08 Score=103.66 Aligned_cols=597 Identities=15% Similarity=0.099 Sum_probs=299.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCcccHHHHHHHHHhcCchhHHHHH
Q 001637 113 FNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHSFCKVGNLSFALDFLRNVDIDVDNVTYNTVIWGLCEQGLANQGFGL 192 (1039)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 192 (1039)
|..-|+.+.|.+-.+.+. +...|..+.++|.+..+++.|.-.+..|+. -.+.+.
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~--------------------aRgaRA 791 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN--------------------ARGARA 791 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhh--------------------hhhHHH
Confidence 556677777766555443 246788888888888888777655544421 122344
Q ss_pred HHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 001637 193 LSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVI 272 (1039)
Q Consensus 193 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 272 (1039)
+++..+.|- .+-..+...-...|.+++|..++.+... |..|=..|-..|.+++|+++-+.--+-.
T Consensus 792 lR~a~q~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH-- 856 (1416)
T KOG3617|consen 792 LRRAQQNGE----EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH-- 856 (1416)
T ss_pred HHHHHhCCc----chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee--
Confidence 555555442 1222223333466788888888876654 4445566777788888877765332111
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHH
Q 001637 273 PDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALG 352 (1039)
Q Consensus 273 pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 352 (1039)
=-.||.....-+-..+|.+.|++.|++.-. |--.++ .|+.- ++....+
T Consensus 857 -Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~-------------------------hafev~-rmL~e-----~p~~~e~ 904 (1416)
T KOG3617|consen 857 -LRNTYYNYAKYLEARRDIEAALEYYEKAGV-------------------------HAFEVF-RMLKE-----YPKQIEQ 904 (1416)
T ss_pred -hhhhHHHHHHHHHhhccHHHHHHHHHhcCC-------------------------hHHHHH-HHHHh-----ChHHHHH
Confidence 112565666666667788888888776522 111111 11111 1112222
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 001637 353 LYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGV 432 (1039)
Q Consensus 353 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 432 (1039)
..+.+. |...|.=....+-..|+.+.|+.+|....+ |.++++..|-.|+.++|-++-++-.
T Consensus 905 Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg---- 965 (1416)
T KOG3617|consen 905 YVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG---- 965 (1416)
T ss_pred HHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc----
Confidence 222222 444444455555667888888888776653 5667777777788888777665532
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 001637 433 AFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSI 512 (1039)
Q Consensus 433 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 512 (1039)
|..+.-.+...|-..|++.+|...|.+... +..-|..|-. +++++-+.-+..| .+..
T Consensus 966 --d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKE-nd~~d~L~nlal~--s~~~--------- 1022 (1416)
T KOG3617|consen 966 --DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKE-NDMKDRLANLALM--SGGS--------- 1022 (1416)
T ss_pred --cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHh-cCHHHHHHHHHhh--cCch---------
Confidence 666666777777777888888777766542 4444443322 2222221111111 1111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 001637 513 INGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKM 592 (1039)
Q Consensus 513 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 592 (1039)
+.-.|-..|++.- .. ....+..|.+.|.+.+|+++--+..+
T Consensus 1023 --------d~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQ----------------------- 1063 (1416)
T KOG3617|consen 1023 --------DLVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQ----------------------- 1063 (1416)
T ss_pred --------hHHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcc-----------------------
Confidence 1112222222211 00 01111224444555554443211100
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 001637 593 KEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKCEVQSVYSGMK 672 (1039)
Q Consensus 593 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~a~~~~~~~~ 672 (1039)
-.|++++.+=+. ...|+...+.-.+.++...++++|..++-...+ |...++.|...+-.-..++-+.|.
T Consensus 1064 f~aL~lIa~DLd--~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1064 FSALDLIAKDLD--AGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNVRVTEEFAELMT 1132 (1416)
T ss_pred cHHHHHHHHhcC--CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCchhHHHHHhcC
Confidence 012222211111 112344444444555555555555555544332 122222233222221222222222
Q ss_pred hc-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH--------------
Q 001637 673 EM-GLTPD----LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEK-------------- 733 (1039)
Q Consensus 673 ~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-------------- 733 (1039)
-. .-.|+ ......+...|.++|.+..|-+-|.+.-.+ ...++++.+.|+.++
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiY 1203 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIY 1203 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceee
Confidence 11 11233 345666778888999998888777655321 123456666666543
Q ss_pred --HHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001637 734 --AMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDM 811 (1039)
Q Consensus 734 --A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 811 (1039)
|..+++.+ .++.++.++..+..-|.+-..++..-.+|+...... +.-+...- ...|-.++|.+.+.+.
T Consensus 1204 ImAANyLQtl---DWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiE----iee~q~yd---Ka~gAl~eA~kCl~ka 1273 (1416)
T KOG3617|consen 1204 IMAANYLQTL---DWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIE----IEELQTYD---KAMGALEEAAKCLLKA 1273 (1416)
T ss_pred eehhhhhhhc---ccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhh----HHHHhhhh---HHhHHHHHHHHHHHHH
Confidence 23333332 566777777777777766666665555555443321 11111111 1235567777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--
Q 001637 812 RGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPD-- 889 (1039)
Q Consensus 812 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 889 (1039)
..++ .....++.|-.-.. .++..++ ...++- .+..+.+.-...|.+.+.-|+
T Consensus 1274 ~~k~--~~~t~l~~Lq~~~a----------~vk~~l~------------~~q~~~--eD~~~~i~qc~~lleep~ld~~I 1327 (1416)
T KOG3617|consen 1274 EQKN--MSTTGLDALQEDLA----------KVKVQLR------------KLQIMK--EDAADGIRQCTTLLEEPILDDII 1327 (1416)
T ss_pred Hhhc--chHHHHHHHHHHHH----------HHHHHHH------------HHHHhh--hhHHHHHHHHHHHhhCcCCCCcc
Confidence 6542 11222333222111 1111111 111111 134444555555665443333
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 001637 890 --ASTYDTLISGHAKIGNKKESIQIYCEMITK 919 (1039)
Q Consensus 890 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 919 (1039)
...|..+|..+....++..|.+.+++|..+
T Consensus 1328 r~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1328 RCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred hhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 356778888888888899999999988874
No 66
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.45 E-value=4.8e-07 Score=96.75 Aligned_cols=803 Identities=15% Similarity=0.132 Sum_probs=402.3
Q ss_pred HHcCChhHHHHHHHHhHhCCCCCCH-hhHHHHHH-------------HHHhcCChhHHHHHHHHHH-------hCCCC-C
Q 001637 79 LTCGRFAKASDTFFTMRNFNIIPVL-PLWNKLIY-------------HFNASGLVSQVWIVYTHMI-------SCGVL-P 136 (1039)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~-------------~~~~~g~~~~a~~~~~~~~-------~~g~~-~ 136 (1039)
...|+++.|...++.. +.+ |+. ..|-.+-. +|+..|++..|..+++-.. +.|-. .
T Consensus 455 id~~df~ra~afles~-~~~--~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt 531 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESL-EMG--PDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGT 531 (1636)
T ss_pred cccCchHHHHHHHHhh-ccC--ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCc
Confidence 4568888887666543 333 332 33544443 3444455555544443321 11211 1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHH
Q 001637 137 NVFTINVLVHSFCKVGNLSFALDFLRNVDIDVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFC 216 (1039)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 216 (1039)
+-+-...++.++. .++.+|..+|-+.. .-...|..|....++++++.+-+ ..|.+.-.-.-.+.+.++.
T Consensus 532 ~fykvra~lail~--kkfk~ae~ifleqn------~te~aigmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l~ 600 (1636)
T KOG3616|consen 532 DFYKVRAMLAILE--KKFKEAEMIFLEQN------ATEEAIGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQALM 600 (1636)
T ss_pred hHHHHHHHHHHHH--hhhhHHHHHHHhcc------cHHHHHHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHHH
Confidence 2222222332222 24556655553321 11234455555666666665443 2243333333445555555
Q ss_pred hcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 001637 217 RIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKS 296 (1039)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 296 (1039)
..|+-+.|.++-. +.----+-|..|.+.|.+..|.+.-..=.. ...|......+..++.+..-++.|-.
T Consensus 601 dt~qd~ka~elk~---------sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagd 669 (1636)
T KOG3616|consen 601 DTGQDEKAAELKE---------SDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGD 669 (1636)
T ss_pred hcCchhhhhhhcc---------ccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhh
Confidence 5666555544321 111123457888999988887765421111 12355566666677777777778878
Q ss_pred HHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHH
Q 001637 297 LIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTY-SSIMGG 375 (1039)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~ 375 (1039)
+|+++.. | ...+..|.+-.-+.+|.++-+-. ++..+++. ......
T Consensus 670 lfeki~d-------------------------~-----dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~h 715 (1636)
T KOG3616|consen 670 LFEKIHD-------------------------F-----DKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDH 715 (1636)
T ss_pred HHHHhhC-------------------------H-----HHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHH
Confidence 8877743 2 22333443333455555544332 12223322 234455
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 001637 376 LCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEA 455 (1039)
Q Consensus 376 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 455 (1039)
+...|+++.|..-|-+... .-..+.+......+.+|+.+++.+..... -...|..+.+-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHH
Confidence 6677778877776655421 12234455566778888888887766532 233466777888888888888
Q ss_pred HHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 001637 456 EDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQ 535 (1039)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 535 (1039)
+++|.+.- .++.-|.+|.+.|+++.|.++-++.. |+......|-+-..-+-+.|++.+|.+++-.+..
T Consensus 785 e~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~- 852 (1636)
T KOG3616|consen 785 EELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE- 852 (1636)
T ss_pred HHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-
Confidence 88875432 25666788888888888888776654 3344455666666667778888888877754432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHH
Q 001637 536 NIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYT 615 (1039)
Q Consensus 536 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 615 (1039)
|+ ..|..|-+.|..+..+++.++-. .+.-..+...+..-+...|++..|..-|.+..+ |.
T Consensus 853 ---p~-----~aiqmydk~~~~ddmirlv~k~h---~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~k 912 (1636)
T KOG3616|consen 853 ---PD-----KAIQMYDKHGLDDDMIRLVEKHH---GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FK 912 (1636)
T ss_pred ---ch-----HHHHHHHhhCcchHHHHHHHHhC---hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HH
Confidence 33 23567778888777777765432 111223444566667778888888777765543 55
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----------HHHHHhcCch--------------HHHHHHHH
Q 001637 616 SLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVL-----------INGLLRHGKC--------------EVQSVYSG 670 (1039)
Q Consensus 616 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~g~~--------------~a~~~~~~ 670 (1039)
+-+.+|...+.+++|.++.+.- | ..+..-.... +..+-++|.. -|.++-+-
T Consensus 913 aavnmyk~s~lw~dayriakte---g-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari 988 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKTE---G-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARI 988 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhcc---c-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHH
Confidence 6667777777777776665431 1 0111111111 1111122222 11111111
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHccC-CHHHHHHHHHHHHhC
Q 001637 671 MKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLV-----GGLVGFG-EIEKAMDVLNDMLVW 744 (1039)
Q Consensus 671 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-----~~~~~~g-~~~~A~~~~~~~~~~ 744 (1039)
..+ .-.|. +..-+...+-..|++++|.+.|-+.++.+. -..||...+ .-+.+.| ++++|.+.|-.-..+
T Consensus 989 ~~k-~k~~~--vhlk~a~~ledegk~edaskhyveaiklnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndw 1063 (1636)
T KOG3616|consen 989 AAK-DKMGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDW 1063 (1636)
T ss_pred hhh-ccCcc--chhHHhhhhhhccchhhhhHhhHHHhhccc--ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccH
Confidence 111 11222 223334445678888888887777765321 112222111 1123344 455555544221110
Q ss_pred --------CCCCChH--hHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH---
Q 001637 745 --------GFSPTST--TIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDM--- 811 (1039)
Q Consensus 745 --------~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 811 (1039)
...||.. .+..-.......|+..+|.-++-++ -+|+.. ++.|...+.|.+|+++-+..
T Consensus 1064 a~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra----nkp~i~-----l~yf~e~~lw~dalri~kdylp~ 1134 (1636)
T KOG3616|consen 1064 AAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA----NKPDIA-----LNYFIEAELWPDALRIAKDYLPH 1134 (1636)
T ss_pred HHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeec----CCCchH-----HHHHHHhccChHHHHHHHhhChh
Confidence 1112211 1111112223334444444332222 134432 34456667777776655421
Q ss_pred -------------HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 001637 812 -------------RGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLF 878 (1039)
Q Consensus 812 -------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 878 (1039)
.++|. ..+..|..-..-+.+.|++.+|...+-+.-+.. .+. ..|+.-| +++|-++-
T Consensus 1135 q~a~iqeeyek~~~k~ga-rgvd~fvaqak~weq~gd~rkav~~~lkinrds--t~n---d~l~e~~-----~~kaadl~ 1203 (1636)
T KOG3616|consen 1135 QAAAIQEEYEKEALKKGA-RGVDGFVAQAKEWEQAGDWRKAVDALLKINRDS--TDN---DALAEHC-----TEKAADLS 1203 (1636)
T ss_pred HHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHhcccHHHHHHHHhhhccCC--CCc---HHHHHHH-----HHHHHhhh
Confidence 22222 244555555666677788888877776653321 111 1122111 12222221
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001637 879 GEMKKRGLKPDA--STYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGR 956 (1039)
Q Consensus 879 ~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 956 (1039)
-+. +.|+. ....+.+..+-..|..+.|-+++--.- . -.--|+++++...|.+|..+.+++.-. .
T Consensus 1204 ikf----l~~d~nme~i~aa~~al~~~~~~e~aael~l~f~-----~----~keaida~~~~eewakakqvake~~p~-~ 1269 (1636)
T KOG3616|consen 1204 IKF----LMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD-----L----SKEAIDAFCEAEEWAKAKQVAKELDPE-M 1269 (1636)
T ss_pred hhh----cCCccchhhHHhcchhhhcccccHHHHHHHHHhh-----h----HHHHHHHHHhHHHHHHHHHHHHHhCch-h
Confidence 111 22332 444455555666677766666553321 1 112456677777888887776654321 1
Q ss_pred CCC-hhhHHHHHHHHhhcCCCch---------hhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHH-HHHHHhhCCCChHH
Q 001637 957 NPN-SSTYDILIGGWCELSNEPE---------LDRTLILSYRAEAKKLFMEMNEKGFVPCESTQT-CFSSTFARPGKKAD 1025 (1039)
Q Consensus 957 ~p~-~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~l~~~G~~~e 1025 (1039)
.|. .-.|.-.+. ..|+-.+ ++.+...+.++ +-++.+++.++.|-..-|. ..+-.|.+.|++..
T Consensus 1270 ~~~idk~yke~lk---negkl~eli~vdviaaidl~ien~qwd---k~idtak~qnykpil~kyva~yaa~li~~~d~aq 1343 (1636)
T KOG3616|consen 1270 EDEIDKHYKEFLK---NEGKLDELIDVDVIAAIDLMIENDQWD---KAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQ 1343 (1636)
T ss_pred hHHHHHHHHHHHh---ccCccccccchhHHHHHHHHHhcccHH---HHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHH
Confidence 111 001111111 1111111 11122223333 3345555666777665443 45667778888888
Q ss_pred HHHHHHH
Q 001637 1026 AQRLLQE 1032 (1039)
Q Consensus 1026 A~~~~~~ 1032 (1039)
|..++.+
T Consensus 1344 ~lal~~q 1350 (1636)
T KOG3616|consen 1344 ALALLEQ 1350 (1636)
T ss_pred HHHHHHH
Confidence 8888774
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=1.3e-08 Score=107.74 Aligned_cols=238 Identities=13% Similarity=0.070 Sum_probs=129.0
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHH
Q 001637 413 KAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAES 492 (1039)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (1039)
..+++...++..+.+++.-.+ ...|.....-.+...|+-++|..........+ .-+.+.|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 445566666666666553222 34444444444555566666666666655544 3345566666666666666777777
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 001637 493 ILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVG- 571 (1039)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 571 (1039)
.+..+...+.. |...|.-+.-.-.+.|+++.....-.++.+. .+.....|...+-++.-.|++..|..+.++..+..
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77666665544 5566665555555666666666655555553 12234556666666666666666666666665533
Q ss_pred CCccHHHHHHHHH------HHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 572 MEENNYILDIFVN------YLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFD 645 (1039)
Q Consensus 572 ~~~~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 645 (1039)
..|+...+..... .....|..++|.+.+..-... +......-..-...+.+.+++++|..++..+...+ |.+
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn 252 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDN 252 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chh
Confidence 2333333322221 233455566666555443321 11111222344556777788888888888777763 333
Q ss_pred HHHHHHHHHHH
Q 001637 646 VTAYNVLINGL 656 (1039)
Q Consensus 646 ~~~~~~l~~~~ 656 (1039)
...|-.+..++
T Consensus 253 ~~Yy~~l~~~l 263 (700)
T KOG1156|consen 253 LDYYEGLEKAL 263 (700)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=6e-10 Score=107.44 Aligned_cols=288 Identities=16% Similarity=0.174 Sum_probs=155.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCC------HhHHHHHHHHHHhcCCHH
Q 001637 625 GKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPD------LATYNIMISASCKQGNLE 697 (1039)
Q Consensus 625 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~ 697 (1039)
++.++|.+.|-+|.+.+ +....+-.+|.+.|.+.|.. .|+.+.+.+.+. || ..+...|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 45566666666665542 34444555555555555555 555555555553 33 234555667777888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHH
Q 001637 698 IAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLV 777 (1039)
Q Consensus 698 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 777 (1039)
.|..+|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+-.+....+
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI------------------------ 179 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI------------------------ 179 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH------------------------
Confidence 8888888777532 113445667777777778888888877777665444332211
Q ss_pred HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--h
Q 001637 778 DMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN--T 855 (1039)
Q Consensus 778 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~ 855 (1039)
...|--|...+....+.+.|..++.+..+.+ +..+..--.+++.+...|+++.|++.++...+. +|+ .
T Consensus 180 -------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~ 249 (389)
T COG2956 180 -------AQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLS 249 (389)
T ss_pred -------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHH
Confidence 0123334444444555555666666555431 112223333445555666666666666666653 333 4
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHH
Q 001637 856 ATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDF 935 (1039)
Q Consensus 856 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 935 (1039)
.+...|..+|.+.|+.+++...+.++.+....++.. ..+.+.-....-.+.|...+.+-+. -.|+...+..|+..-
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhh
Confidence 455556666666667666666666666532223322 1122221122224445544444444 356666555555433
Q ss_pred H---hcCCHHHHHHHHHHHHHCC
Q 001637 936 A---KEGKMHQARELLKEMQARG 955 (1039)
Q Consensus 936 ~---~~g~~~~A~~~~~~~~~~g 955 (1039)
. ..|.+.+-+.++++|+...
T Consensus 326 l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 326 LADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred hccccccchhhhHHHHHHHHHHH
Confidence 2 2345666666666666653
No 69
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.7e-09 Score=108.06 Aligned_cols=283 Identities=13% Similarity=0.133 Sum_probs=159.2
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHH
Q 001637 414 AGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESI 493 (1039)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (1039)
.|++..|.++..+..+.+.. ....|..-..+--+.|+.+.+-.++.+..+..-.++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46777777777666655544 23345555556666777777777777777653345555666777777778888888888
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 494 LQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNV-------FIFAALIDGYFKAGKQEVAFDLYND 566 (1039)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~ 566 (1039)
..++.+.++. +.........+|.+.|++.+...++.++.+.|.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8777777665 6667777778888888888888888888877655443 2455555555444444444444444
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 001637 567 LKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDV 646 (1039)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 646 (1039)
.... ...++.....++.-+.+.|..++|.++.++.++++..|. ......+.+.++.+.-++..++-.+.. |.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 3321 233444445555555556666666666655555544433 111223344455554444444444431 3333
Q ss_pred HHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001637 647 TAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEM 706 (1039)
Q Consensus 647 ~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 706 (1039)
..+.++...|.+++.+ +|.+.|+..++. .|+..+|+.+..++.+.|+..+|.+.+++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4444444444444444 444444433332 344444444444444444444444444433
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.2e-08 Score=101.74 Aligned_cols=272 Identities=12% Similarity=0.071 Sum_probs=208.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHH
Q 001637 677 TPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNS-VTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKI 755 (1039)
Q Consensus 677 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 755 (1039)
..|......+...+...|+.++|+..|++.+.. .|+. .......-.+...|+.+.-..+...+.... +-...-|..
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 335778888999999999999999999988753 4432 223333444567788888777777765321 122333444
Q ss_pred HHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001637 756 LLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSH 835 (1039)
Q Consensus 756 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 835 (1039)
-+......++++.|+.+.++.+..+ +.+...+-.-+.++...|+.++|.-.|+..+.. .+-+..+|.-|+..|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhch
Confidence 4455567788999999999988864 235667777788999999999999999999875 23478899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHH-HHHHcCCC-hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHH
Q 001637 836 INKALATYTQMINEGVSPNTATYNILL-GIFLGTGS-TKEVDDLFGEMKKRGLKPDA-STYDTLISGHAKIGNKKESIQI 912 (1039)
Q Consensus 836 ~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~-~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 912 (1039)
+.+|..+-+...+. +.-+..++..+. .+|...-. -++|.+++++.++ +.|+- ..-..+...+...|+.++++.+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 99999998887763 333566777663 55554433 5789999999886 45654 2345667778899999999999
Q ss_pred HHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 913 YCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 913 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
+++.+. ..||....+.|+..+...+.+++|.+.|..+++ +.|+.
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 999998 688999999999999999999999999999999 88865
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=3.1e-08 Score=96.71 Aligned_cols=377 Identities=14% Similarity=0.075 Sum_probs=224.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001637 338 ISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCA 417 (1039)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 417 (1039)
+.-+....++..|+.+++.-...+-.-...+-.-+..++.+.|++++|+..+..+... -.++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 4455667889999998887664332222222223456778999999999999988774 456778888888888889999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001637 418 MEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEM 497 (1039)
Q Consensus 418 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 497 (1039)
.+|..+-.+..+ ++-.-..|....-+.++-++-..+.+.+.+. ..--.+|.......-++.+|++++...
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999887665432 3333444455555677777777766666542 122344555555566789999999999
Q ss_pred HhCCCCCCHHhHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 001637 498 EEKHVVPNVITYSSI-INGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENN 576 (1039)
Q Consensus 498 ~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 576 (1039)
+..+ |.-...|.. .-+|.+..-++-+.++++--++. .+.+..+.+..+.-..+.=+-..|.+-.+++...+...
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 8763 344444443 34567778888888888887775 44444555555444444322233333333333322111
Q ss_pred HHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001637 577 YILDIFVNYLKRHG-----KMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNV 651 (1039)
Q Consensus 577 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 651 (1039)
-..+..+++++ .-+.|.+++-.+++ +.| .....|+--|.+.++..+|..+.+++. |.++.-|-.
T Consensus 253 ---~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Eyil 321 (557)
T KOG3785|consen 253 ---YPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYIL 321 (557)
T ss_pred ---chhHHHHHHcCeEEEeCCccHHHhchHHHh--hCh--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHH
Confidence 11233334432 34667777766665 223 234456677889999999998887763 334444433
Q ss_pred HHHHHHhcCch----H----HHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001637 652 LINGLLRHGKC----E----VQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLV 722 (1039)
Q Consensus 652 l~~~~~~~g~~----~----a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 722 (1039)
-.-.++..|.. + |.+.|+-.-+.+...| ..--.++...+.-..++++.+-.+..+...=.. |..--..+.
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~A 400 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLA 400 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHH
Confidence 33334444432 1 3334433333444444 233444555555556677777777666654222 333333456
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 001637 723 GGLVGFGEIEKAMDVLNDML 742 (1039)
Q Consensus 723 ~~~~~~g~~~~A~~~~~~~~ 742 (1039)
.+.+..|.+.+|.++|-+..
T Consensus 401 QAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHhcChHHHHHHHhhhc
Confidence 67777777777777776654
No 72
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=4.9e-09 Score=104.89 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001637 891 STYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQAR 954 (1039)
Q Consensus 891 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 954 (1039)
..+.+|+..|.+.+.+.+|.+.|+..++ ..|+..+|+.+..++.+.|+.++|..++++.+..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4555566666666666666666666655 5566666666666666666666666666665543
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-07 Score=95.13 Aligned_cols=395 Identities=14% Similarity=0.075 Sum_probs=258.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 001637 330 NLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKC-GRLAEAKMLFREMEKMGVDPNHVSYTTLI 408 (1039)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~li 408 (1039)
|...-..++..|...++-+.|..........--.| --+.|+.-+.+. ++-.++.--+.+.... -+... ..|
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p---~inlMla~l~~~g~r~~~~vl~ykevvre----cp~aL-~~i 167 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSP---RINLMLARLQHHGSRHKEAVLAYKEVIRE----CPMAL-QVI 167 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccch---hHHHHHHHHHhccccccHHHHhhhHHHHh----cchHH-HHH
Confidence 44445567788888888888888776655431111 123333323232 2332333333333221 01111 111
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHC-CCcccHHHHHHHHHHHHhcC
Q 001637 409 DSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFK--AGRPSEAEDTFNLILKH-NLVSNHVTYSSLIDGCCKLG 485 (1039)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 485 (1039)
.+..+.+ +..+..-=..|......|+..+....+.+++. .++...|...+-.+... -++.|+.....+.+.+...|
T Consensus 168 ~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G 246 (564)
T KOG1174|consen 168 EALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG 246 (564)
T ss_pred HHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc
Confidence 1111111 00011111122233344444444555555544 46666666666555443 34556778888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001637 486 DMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYN 565 (1039)
Q Consensus 486 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 565 (1039)
+..+|+..|+.....++. ++...-...-.+.+.|+++....+...+.... .-....|..-+.......+++.|+.+-+
T Consensus 247 dn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred CchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998876432 33333334445667888888888887776541 1234445555555566788888888888
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001637 566 DLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVP-DRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPF 644 (1039)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 644 (1039)
+.+... +.+...+-.-...+...|+.++|.-.|..... +.| +...|..|+..|...|+..+|....+...+. ++.
T Consensus 325 K~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~ 400 (564)
T KOG1174|consen 325 KCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN 400 (564)
T ss_pred HHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence 777543 23445555566778889999999999998877 444 5679999999999999999999888877664 466
Q ss_pred CHHHHHHHH-HHHHhcCch--HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001637 645 DVTAYNVLI-NGLLRHGKC--EVQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNV 720 (1039)
Q Consensus 645 ~~~~~~~l~-~~~~~~g~~--~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 720 (1039)
+..+...+. ..+...... +|..++++.++. +|+ ....+.+...+...|..++++.+++..... .||....+.
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~ 476 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNH 476 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHH
Confidence 667666663 444444333 788888887775 787 777888899999999999999999998873 689999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 001637 721 LVGGLVGFGEIEKAMDVLNDMLV 743 (1039)
Q Consensus 721 l~~~~~~~g~~~~A~~~~~~~~~ 743 (1039)
|.+.+...+.+++|++.|..++.
T Consensus 477 Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 477 LGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999999874
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=6.1e-10 Score=120.26 Aligned_cols=242 Identities=18% Similarity=0.206 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CC
Q 001637 786 AYYNSLITILCRLGMTRKATSVLEDMRGR-----GI-MMDTI-TYNALMRGYWVSSHINKALATYTQMINE-----G-VS 852 (1039)
Q Consensus 786 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~ 852 (1039)
.+...|..+|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|+.+|++++.. | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35556899999999999999999887653 21 23322 3445777899999999999999998752 2 33
Q ss_pred CC-hhHHHHHHHHHHcCCChHHHHHHHHHHHh-----CCC-CCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHC---CC
Q 001637 853 PN-TATYNILLGIFLGTGSTKEVDDLFGEMKK-----RGL-KPDAS-TYDTLISGHAKIGNKKESIQIYCEMITK---GY 921 (1039)
Q Consensus 853 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 921 (1039)
|. ..+++.|..+|...|++++|...++++.+ .+. .|+.. .++.++..++-.+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 43 56788899999999999999999988874 122 22332 3456777788999999999999987652 12
Q ss_pred ccC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C--CC-ChhhHHHHHHHHhhcCCCchhhHHHhHhHHHH
Q 001637 922 VPK----TSTYNVLIGDFAKEGKMHQARELLKEMQARG----R--NP-NSSTYDILIGGWCELSNEPELDRTLILSYRAE 990 (1039)
Q Consensus 922 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~--~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 990 (1039)
.++ ..+++.|...|...|++++|.+++++++++- - .+ ....++.|...|.+.++..+...+ +.+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l-----~~~ 434 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL-----FEE 434 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH-----HHH
Confidence 232 3689999999999999999999999988852 1 12 244667777788665553333332 344
Q ss_pred HHHHHHHHHhCCCCCChh-hHHHHHHHhhCCCChHHHHHHHHHHh
Q 001637 991 AKKLFMEMNEKGFVPCES-TQTCFSSTFARPGKKADAQRLLQEFY 1034 (1039)
Q Consensus 991 a~~~~~~~~~~~~~p~~~-~~~~l~~~l~~~G~~~eA~~~~~~~~ 1034 (1039)
+..+. +...- ..|+.. +|..|+-+|.+.|++++|+++.+.+.
T Consensus 435 ~~~i~-~~~g~-~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIM-KLCGP-DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHH-HHhCC-CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44444 22211 235544 78899999999999999999998765
No 75
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.8e-06 Score=93.95 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHCCCccCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001637 905 NKKESIQIYCEMITKGYVPKT----STYNVLIGDFAKEGKMHQARELLKEMQAR 954 (1039)
Q Consensus 905 ~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 954 (1039)
+..+.++-...|+++...||+ ..|..|+..|....+|..|-..+++|..+
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 566667777777765444443 46778889999999999999999999984
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=8.7e-10 Score=126.33 Aligned_cols=147 Identities=15% Similarity=0.010 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHH
Q 001637 801 TRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFG 879 (1039)
Q Consensus 801 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 879 (1039)
+++|...+++..+.+ +.+...|..+...+...|++++|+..|+++++ +.|+ ...+..+..++...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 556666666665542 22455555555555566666666666666665 4454 4445555556666666666666666
Q ss_pred HHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 880 EMKKRGLKPDA-STYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 880 ~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
++.+. .|+. ..+..++..+...|++++|+..+++++.. ..| ++..+..+...|...|++++|...++++..
T Consensus 397 ~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 397 ECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 66552 2221 11222233344456666666666665542 123 334455555556666666666666665554
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=1.5e-09 Score=124.46 Aligned_cols=199 Identities=12% Similarity=0.023 Sum_probs=144.5
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001637 764 RRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATY 843 (1039)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 843 (1039)
++.++|...++++++.+ +.+..++..+..++...|++++|+..|++..+.+ +.+...|..+...+...|++++|+..+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34556666666666643 3367788888899999999999999999998863 335778888899999999999999999
Q ss_pred HHHHHCCCCCCh-hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCc
Q 001637 844 TQMINEGVSPNT-ATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYV 922 (1039)
Q Consensus 844 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 922 (1039)
+++++ +.|+. ..+..++.++...|++++|...++++.+...+-+...+..+..++...|+.++|...++++.. ..
T Consensus 396 ~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~ 471 (553)
T PRK12370 396 NECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QE 471 (553)
T ss_pred HHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--cc
Confidence 99998 66763 333445556777899999999999987643222344566777888899999999999998766 45
Q ss_pred c-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHH
Q 001637 923 P-KTSTYNVLIGDFAKEGKMHQARELLKEMQAR-GRNPNSSTYDILIGGW 970 (1039)
Q Consensus 923 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~ 970 (1039)
| +...++.+...|...| ++|...++++.+. .-.|....+..++.++
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 5 3455666667777777 4788877777664 1234444444444443
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=1.4e-09 Score=111.41 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHH
Q 001637 785 QAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLG 863 (1039)
Q Consensus 785 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 863 (1039)
...+..++..|...|++++|...+++..+.. +.+...+..+...+...|++++|++.|++.++. .| +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 4566677777777777777777777776642 334566667777777777777777777777763 34 3455666666
Q ss_pred HHHcCCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCH
Q 001637 864 IFLGTGSTKEVDDLFGEMKKRGL-KPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKM 941 (1039)
Q Consensus 864 ~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 941 (1039)
.+...|++++|.+.++++.+... ......+..+...+...|++++|.+.+++.++ ..| +...+..++..+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCH
Confidence 77777777777777777765321 12233455556666677777777777777666 334 345566666666677777
Q ss_pred HHHHHHHHHHHH
Q 001637 942 HQARELLKEMQA 953 (1039)
Q Consensus 942 ~~A~~~~~~~~~ 953 (1039)
++|...++++++
T Consensus 186 ~~A~~~~~~~~~ 197 (234)
T TIGR02521 186 KDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHHHH
Confidence 777777777666
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=9.4e-08 Score=93.07 Aligned_cols=316 Identities=15% Similarity=0.105 Sum_probs=206.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCC-HhHHHHHHHHH
Q 001637 613 NYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPD-LATYNIMISAS 690 (1039)
Q Consensus 613 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 690 (1039)
-..-+...+...|++..|+.-|...++.+ |.+..++..-...|...|+. .|+.-+.+.++. +|| ...-..-...+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 34456667778899999999999888864 55666666667788889998 788888888875 788 34444455678
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHH
Q 001637 691 CKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVIL 770 (1039)
Q Consensus 691 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 770 (1039)
.++|.+++|..-|+..++.. |+..+ ...++.+....++-..+ ...+..+...|+...++
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchhhHH
Confidence 89999999999999998753 32111 11111111111222111 12223344556666666
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 001637 771 QMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEG 850 (1039)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 850 (1039)
.+...+++.. +-|...+..-..+|...|....|+.-++...+. ..-+..+..-+-..+...|+.+.++...++.++
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-- 251 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-- 251 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--
Confidence 6666666642 226666666777777777777777776666553 122344555555666677777777777777776
Q ss_pred CCCChh----HHHHH---------HHHHHcCCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHH
Q 001637 851 VSPNTA----TYNIL---------LGIFLGTGSTKEVDDLFGEMKKRGLKPDAS---TYDTLISGHAKIGNKKESIQIYC 914 (1039)
Q Consensus 851 ~~p~~~----~~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~ 914 (1039)
+.||.. .|..| +....+.++|-++.+..+...+.......+ .+..+-.++...|++.+|++...
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 566532 11111 123445777888888888877643221222 23345556777888999999999
Q ss_pred HHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 915 EMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 915 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
+++. +.| |..++.--..+|.-...|++|+.-|+++.+ ..|+.
T Consensus 332 evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn 374 (504)
T KOG0624|consen 332 EVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESN 374 (504)
T ss_pred HHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCccc
Confidence 9887 777 477777778888888899999999999998 66654
No 80
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.7e-11 Score=88.01 Aligned_cols=50 Identities=50% Similarity=1.020 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 001637 238 RDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCK 287 (1039)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 287 (1039)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=4.1e-09 Score=107.93 Aligned_cols=200 Identities=14% Similarity=0.064 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 001637 715 SVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITI 794 (1039)
Q Consensus 715 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 794 (1039)
...+..+...+...|++++|.+.++++++ .. +.+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----------------------------------~~-p~~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE-----------------------------------HD-PDDYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------------------hC-cccHHHHHHHHHH
Confidence 44555566666666666666666665543 21 2345677778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHH
Q 001637 795 LCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKE 873 (1039)
Q Consensus 795 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 873 (1039)
|...|++++|.+.+++..+.. +.+...+..+...+...|++++|++.|++.+.....| ....+..+..++...|++++
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 888899999999988888763 3456777888888888899999999999888743223 34566777888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 874 VDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 874 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
|.+.+.+..+.. +.+...+..+...+...|++++|.+.++++++. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 154 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 154 AEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988742 234566777888888999999999999998874 233667777788888889999999998888776
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.9e-06 Score=90.91 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCChHHHHHHHH--------HHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHh--CCCCCC----
Q 001637 824 NALMRGYWVSSHINKALATYT--------QMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKK--RGLKPD---- 889 (1039)
Q Consensus 824 ~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---- 889 (1039)
-.++......|+++.|++++. ...+.+..|. +...+...+.+.+..+-|..++.+++. ....+.
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 333444445555555555555 3333223332 233344445555555445555544442 001111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 890 ASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKE 950 (1039)
Q Consensus 890 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 950 (1039)
...+.-++..-.+.|+.++|..+++++.+. .++|..+...++.+|++. +.++|..+-++
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 122333344444668999999999998873 334778888888888876 77888777554
No 83
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=5.7e-11 Score=85.33 Aligned_cols=50 Identities=52% Similarity=0.920 Sum_probs=33.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 001637 329 PNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCK 378 (1039)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 378 (1039)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.7e-06 Score=89.83 Aligned_cols=167 Identities=12% Similarity=0.141 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHcCCChHHH
Q 001637 799 GMTRKATSVLEDMRGRGIMMDTITYNALMRGYW--VSSHINKALATYTQMINEGVSPN--TATYNILLGIFLGTGSTKEV 874 (1039)
Q Consensus 799 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A 874 (1039)
+..+.+.++....... .|. ..+..++..+. +.....+|.+++.+.-+ -.|. .++....+.....+|.++.|
T Consensus 321 nk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred hhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 4445555554444332 233 33444443332 22247778887777766 3454 45566677788899999999
Q ss_pred HHHHH--------HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCccChH----HHHHHHHHHHhcCC
Q 001637 875 DDLFG--------EMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITK--GYVPKTS----TYNVLIGDFAKEGK 940 (1039)
Q Consensus 875 ~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~----~~~~l~~~~~~~g~ 940 (1039)
.+++. ...+.+..|..+. +++..+.+.++.+-|..++.+++.. .-.+... +|.-+...-.++|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 6666566666554 4677777888877777777776642 0112222 33333344457799
Q ss_pred HHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcC
Q 001637 941 MHQARELLKEMQARGRNP-NSSTYDILIGGWCELS 974 (1039)
Q Consensus 941 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~ 974 (1039)
-++|..+++++++ ..| |.-+...++.+|+...
T Consensus 474 ~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 474 EEEASSLLEELVK--FNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred hHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhcC
Confidence 9999999999999 555 7778888999998763
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=6.4e-09 Score=100.28 Aligned_cols=238 Identities=15% Similarity=0.077 Sum_probs=143.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001637 575 NNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLIN 654 (1039)
Q Consensus 575 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 654 (1039)
|-++-..+..+|.+.|.+.+|...++..++. .|-+.+|..|...|.+..+++.|+.++.+-.+. +|.++.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3344455677777777777777777777663 355556666777777777787777777777665 2444444444444
Q ss_pred HHHhcCchHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 001637 655 GLLRHGKCEVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKA 734 (1039)
Q Consensus 655 ~~~~~g~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 734 (1039)
.+-.. ++.++|.++|+...+.. ..++....++...|.-.++.+-|
T Consensus 299 i~eam----------------------------------~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 299 IHEAM----------------------------------EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHHHH----------------------------------HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH
Confidence 44444 44455555555444421 11333444444444444555555
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001637 735 MDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLN--QAYYNSLITILCRLGMTRKATSVLEDMR 812 (1039)
Q Consensus 735 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 812 (1039)
+.+|++++..|.. +...+..+.-+|.-.+.++.++..+.+++..-..|+ ..+|..|..+....|++.-|.+.|+-..
T Consensus 344 lryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 344 LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 5555555444432 223333344444444455555555555544433343 3477778888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001637 813 GRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN 854 (1039)
Q Consensus 813 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 854 (1039)
..+ ......+|.|.-.-.+.|++++|..+++.... +.|+
T Consensus 423 ~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 423 TSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred ccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 653 22467788888778888888888888888777 6676
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=1.4e-08 Score=109.94 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCC-CC
Q 001637 786 AYYNSLITILCRLGMTRKATSVLEDMRGR----GIM--MD-TITYNALMRGYWVSSHINKALATYTQMIN----EGV-SP 853 (1039)
Q Consensus 786 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~p 853 (1039)
.+++.|..+|.+.|++++|.+++++++.. +-. +. ...++.|...|.+.+++++|.++|.+... .|. .|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 47888999999999999999999887643 111 11 34567777788888888888887776543 221 22
Q ss_pred C-hhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 001637 854 N-TATYNILLGIFLGTGSTKEVDDLFGEMK 882 (1039)
Q Consensus 854 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 882 (1039)
+ ..+|..|+.+|...|++++|.++.+.+.
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 4556666677777777777777666655
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=1.6e-06 Score=95.64 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=47.3
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----
Q 001637 375 GLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAG---- 450 (1039)
Q Consensus 375 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g---- 450 (1039)
.+...|++++|++.+..-.+. +.............+.+.|+.++|..++..++.+++. |..-|..+..+..-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 445667777777776654433 2222334445556666666666666666666666543 4444444444442222
Q ss_pred -ChhHHHHHHHHHHHC
Q 001637 451 -RPSEAEDTFNLILKH 465 (1039)
Q Consensus 451 -~~~~A~~~~~~~~~~ 465 (1039)
..+...++++.+...
T Consensus 91 ~~~~~~~~~y~~l~~~ 106 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK 106 (517)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 234445555554443
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.1e-07 Score=99.13 Aligned_cols=235 Identities=15% Similarity=0.177 Sum_probs=165.5
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-------H
Q 001637 753 IKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYN-------A 825 (1039)
Q Consensus 753 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~ 825 (1039)
...+.++..+..+++.+.+.|...++.. .+...++....+|...|.+.+....-+...+.|.. ...-|+ -
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3456777788889999999999999864 66677778888999999988888877776665432 111222 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccC
Q 001637 826 LMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDAS-TYDTLISGHAKIG 904 (1039)
Q Consensus 826 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g 904 (1039)
+..+|.+.++++.|+..|.+.+.....|+. ..+....+++........- +.|... -...-+..+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 344677778899999999998775445443 2233345555555554443 334331 1223366688999
Q ss_pred CHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHH
Q 001637 905 NKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTL 983 (1039)
Q Consensus 905 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 983 (1039)
++..|++.|.++++. .| |...|....-+|.+.|.+..|+.-.+..++ +.|+. +.+|.+.|. -..
T Consensus 373 dy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~------~kgy~RKg~-----al~ 437 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNF------IKAYLRKGA-----ALR 437 (539)
T ss_pred CHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchH------HHHHHHHHH-----HHH
Confidence 999999999999984 57 788999999999999999999999999999 77876 555555421 112
Q ss_pred hHhHHHHHHHHHHHHHhCCCCCChh-hHHHHHHHhh
Q 001637 984 ILSYRAEAKKLFMEMNEKGFVPCES-TQTCFSSTFA 1018 (1039)
Q Consensus 984 ~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~l~ 1018 (1039)
....|+.|.+-|.+.++.. |+.. ...++.++..
T Consensus 438 ~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 2345789999999998764 5543 5556655555
No 89
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=3.7e-09 Score=101.86 Aligned_cols=228 Identities=14% Similarity=0.080 Sum_probs=135.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001637 279 NTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMV 358 (1039)
Q Consensus 279 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (1039)
+.+.++|.+.|.+.+|..-|+..++ ..|-+.||-.|-.+|.+..+.+.|+.+|.+-+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-----------------------q~~~~dTfllLskvY~ridQP~~AL~~~~~gl 283 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-----------------------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGL 283 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-----------------------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhh
Confidence 5566677777777777776666655 23455566666666777777777777666665
Q ss_pred HCCCCCCHhHH-HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 001637 359 KYGFLPDVVTY-SSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVV 437 (1039)
Q Consensus 359 ~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 437 (1039)
.. .|-.+|+ .-+...+-..++.++|.++|++..+... .++.....+...|.-.++.+-|+..++++++.|+. +..
T Consensus 284 d~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-spe 359 (478)
T KOG1129|consen 284 DS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPE 359 (478)
T ss_pred hc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChH
Confidence 54 2333333 3445555666666666666666665432 24445555555566666666666666666666665 666
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 001637 438 VYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNH--VTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIING 515 (1039)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 515 (1039)
.|+.+.-+|.-.+++|-++..|.+....--.|+. .+|-.+.......|++.-|.+.|+-.+..+.. ....++.|.-.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL 438 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVL 438 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHH
Confidence 6666666666666666666666665543222222 23444555555556666666666666655433 45556666666
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 001637 516 YVKKGMLDEAANVMRKMKS 534 (1039)
Q Consensus 516 ~~~~g~~~~A~~~~~~~~~ 534 (1039)
-.+.|++++|..++.....
T Consensus 439 ~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKS 457 (478)
T ss_pred HhhcCchHHHHHHHHHhhh
Confidence 6666666666666665544
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.9e-08 Score=105.12 Aligned_cols=151 Identities=11% Similarity=-0.021 Sum_probs=74.2
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--hHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHH
Q 001637 728 FGEIEKAMDVLNDMLVWG-FSPT--STTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKA 804 (1039)
Q Consensus 728 ~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 804 (1039)
.+..+.++.-+.+++... ..|+ ...+......+...|+.+.|...+..+++.. +.+..+|+.++..|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 455566666666665321 1222 1234444445555555555555555555542 22445555555555566666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 001637 805 TSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMK 882 (1039)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 882 (1039)
...|++..+.. +.+..+|..++..+...|++++|++.|++.++ ..|+..........+...++.++|.+.+++..
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 66555555431 11244555555555555556666666655555 34432211111122233445555555554443
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=7.9e-09 Score=107.97 Aligned_cols=238 Identities=12% Similarity=0.020 Sum_probs=154.8
Q ss_pred cCChhHHHHHHHHHHHcC-CCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 001637 763 SRRGDVILQMHERLVDMG-VRL--NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKA 839 (1039)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 839 (1039)
....+.++.-+..++... ..| ....|..++.+|...|++++|...|++..+.. +.++..|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356677777777777532 122 24568888888999999999999999888863 34578889999999999999999
Q ss_pred HHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 840 LATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 840 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
++.|++.++ +.|+ ..++..++.++...|++++|.+.+++..+. .|+..........+...++.++|...+++...
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999988 6775 667788888888899999999999988873 34332111112223456788999999877654
Q ss_pred CCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-ChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHH
Q 001637 919 KGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQAR---G--RNP-NSSTYDILIGGWCELSNEPELDRTLILSYRAEAK 992 (1039)
Q Consensus 919 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g--~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~ 992 (1039)
. ..|+...| ...+...|++.++ +.++.+.+. . +.| ...+|..++..+...| ++++|.
T Consensus 194 ~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g------------~~~~A~ 256 (296)
T PRK11189 194 K-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLG------------DLDEAA 256 (296)
T ss_pred h-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC------------CHHHHH
Confidence 2 33333222 2223345655444 344554431 1 122 2346667776666554 478899
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhCCCC
Q 001637 993 KLFMEMNEKGFVPCESTQTCFSSTFARPGK 1022 (1039)
Q Consensus 993 ~~~~~~~~~~~~p~~~~~~~l~~~l~~~G~ 1022 (1039)
..|+++.+.+.....++-..++......++
T Consensus 257 ~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 257 ALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 999988875422223355555555444443
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=3.8e-06 Score=92.73 Aligned_cols=292 Identities=18% Similarity=0.177 Sum_probs=203.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhc--
Q 001637 338 ISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSY-TTLIDSLFKA-- 414 (1039)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~-- 414 (1039)
...+...|++++|++.++.-.+. +.............+.+.|+.++|..+|+.+++.+ |+...| ..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567889999999999876554 33235556678889999999999999999999985 455554 4444444222
Q ss_pred ---CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHH
Q 001637 415 ---GCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPS-EAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAA 490 (1039)
Q Consensus 415 ---g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (1039)
...+....+++++...-+. ..+...+.-.+.....+. .+...+..+...|+|+ +++.|-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 2567778888888765322 222212211122212222 3455566777888665 577777777766666666
Q ss_pred HHHHHHHHhC----C----------CCCCHH--hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001637 491 ESILQEMEEK----H----------VVPNVI--TYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKA 554 (1039)
Q Consensus 491 ~~~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 554 (1039)
.+++...... + -.|... ++.-+...|...|++++|++.+++..+.. +..+..|..-...+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 6666665432 1 123443 44666788899999999999999999863 22367788888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHh------hH--HHHHHHHHhcCC
Q 001637 555 GKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRV------NY--TSLMDGFFKVGK 626 (1039)
Q Consensus 555 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~ 626 (1039)
|++++|.+.++...... .-|.++-+..+..+.+.|++++|.+++....+.+..|... .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988764 3466777778888999999999999999998765433221 12 345678999999
Q ss_pred HHHHHHHHHHHHH
Q 001637 627 ETAALNIAQEMTE 639 (1039)
Q Consensus 627 ~~~A~~~~~~~~~ 639 (1039)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877654
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=7e-08 Score=89.35 Aligned_cols=207 Identities=17% Similarity=0.106 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIF 865 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 865 (1039)
+...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++.++ +.|+ ..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 45667888999999999999999999863 33578999999999999999999999999999 7785 77889999999
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHH
Q 001637 866 LGTGSTKEVDDLFGEMKKRGLKPD-ASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQ 943 (1039)
Q Consensus 866 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 943 (1039)
|.+|++++|...|+++.....-|. ..+|..++.+..+.|+.+.|.+.|++.++ ..| .+.+.-.+.....+.|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchH
Confidence 999999999999999997433332 35788888888899999999999999998 677 56777788899999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHH
Q 001637 944 ARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCF 1013 (1039)
Q Consensus 944 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 1013 (1039)
|...++....++- ++.......|..-- ..|+.+.+.++=..+.. ..|.++-|.++
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak------------~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAK------------RLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHH------------HhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 9999999999763 65544433333221 23445555555545533 35776666544
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=8.3e-08 Score=88.85 Aligned_cols=194 Identities=15% Similarity=0.117 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001637 822 TYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGH 900 (1039)
Q Consensus 822 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 900 (1039)
+...+.-+|...|+...|..-+++.++ ..|+ ..++..+...|...|..+.|.+.|+++++.. +-+..+.|..+.-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 445567789999999999999999999 6786 7899999999999999999999999999742 33456788889999
Q ss_pred hccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCCCch
Q 001637 901 AKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN-SSTYDILIGGWCELSNEPE 978 (1039)
Q Consensus 901 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~ 978 (1039)
|..|++++|...|++++....-| -+.+|..++.+..+.|+.+.|.+.+++.++ +.|+ +.+.-.+....
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~-------- 183 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLH-------- 183 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHH--------
Confidence 99999999999999999754334 467899999999999999999999999999 7785 44554444433
Q ss_pred hhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhCCCChHHHHHHHHHH
Q 001637 979 LDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSSTFARPGKKADAQRLLQEF 1033 (1039)
Q Consensus 979 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~l~~~G~~~eA~~~~~~~ 1033 (1039)
++.|++..|.-+++.....+ .+..+..--.+++--+.|+.+-|.++=.++
T Consensus 184 ----~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 184 ----YKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred ----HhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34566788999998887665 477777766678888899998888865544
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.6e-07 Score=93.96 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=68.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCC
Q 001637 792 ITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGS 870 (1039)
Q Consensus 792 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 870 (1039)
++.+.+.|++..|++.+.+++... +.|...|.....+|.+.|.+..|+.-.+..++ +.|+ ...|..-+.++....+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHH
Confidence 566777888888888888887764 44677788777788888888888888777777 5665 5566666777777778
Q ss_pred hHHHHHHHHHHHhC
Q 001637 871 TKEVDDLFGEMKKR 884 (1039)
Q Consensus 871 ~~~A~~~~~~~~~~ 884 (1039)
++.|.+.|++.++.
T Consensus 442 ydkAleay~eale~ 455 (539)
T KOG0548|consen 442 YDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888764
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=2.1e-06 Score=93.93 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CCCH--HHHHHHH
Q 001637 822 TYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGL-KPDA--STYDTLI 897 (1039)
Q Consensus 822 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~ 897 (1039)
....+...+...|++++|.+.+++.++ ..|+ ...+..+..++...|++++|...+++..+... .|+. ..|..+.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 333444556666667777777776666 4443 44555666666677777777777666665211 1222 2334555
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 001637 898 SGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 898 ~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
..+...|++++|+..++++..
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhc
Confidence 666677777777777777653
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=0.00024 Score=88.78 Aligned_cols=439 Identities=13% Similarity=0.034 Sum_probs=220.5
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCC--c-C----chhHHHHHHHHHhcC----chhh
Q 001637 155 SFALDFLRNVDIDVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGIS--V-D----SFSCNILVKGFCRIG----MVKY 223 (1039)
Q Consensus 155 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~--~-~----~~~~~~l~~~~~~~g----~~~~ 223 (1039)
++.++++....+-+ .++ ..+..+... .+.+.+++......|+- + + .+.|..++.-+.+.. ..+.
T Consensus 265 ~~~~~~l~~~a~~~-~~~-~~l~~~l~~---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~ 339 (903)
T PRK04841 265 LETRHFLLRCSVLR-SMN-DALIVRVTG---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQE 339 (903)
T ss_pred HHHHHHHHHhcccc-cCC-HHHHHHHcC---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchH
Confidence 45566665554322 333 233333333 33456677777766641 1 1 244666666554321 1222
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH----HHHHHHHHccCCHHHHHHHHH
Q 001637 224 GEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSY----NTLISGFCKRGDFVKAKSLID 299 (1039)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~----~~li~~~~~~g~~~~A~~~~~ 299 (1039)
...++. .....|...|++.+|........ |.... ......+...|+++.+...++
T Consensus 340 ~~~lh~---------------raa~~~~~~g~~~~Al~~a~~a~------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~ 398 (903)
T PRK04841 340 LPELHR---------------AAAEAWLAQGFPSEAIHHALAAG------DAQLLRDILLQHGWSLFNQGELSLLEECLN 398 (903)
T ss_pred HHHHHH---------------HHHHHHHHCCCHHHHHHHHHHCC------CHHHHHHHHHHhHHHHHhcCChHHHHHHHH
Confidence 233332 23455777888887776554432 22111 112233445677777777766
Q ss_pred HHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCH--hHHHH
Q 001637 300 EVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGF------LPDV--VTYSS 371 (1039)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~~--~~~~~ 371 (1039)
.+.... ...+..........+...|++++|...+......-- .+.. .....
T Consensus 399 ~lp~~~---------------------~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 457 (903)
T PRK04841 399 ALPWEV---------------------LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNAL 457 (903)
T ss_pred hCCHHH---------------------HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHH
Confidence 552200 001111223334445577899999888887754310 1111 11222
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CCCHHHHHHH
Q 001637 372 IMGGLCKCGRLAEAKMLFREMEKMGVDPNH----VSYTTLIDSLFKAGCAMEAFALQSQMMVR----GV-AFDVVVYTTL 442 (1039)
Q Consensus 372 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l 442 (1039)
+...+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |. .....++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 334456788899998888887653111121 23455566677788888888888777643 11 1112344556
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC----CCc--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCC--CHHhHHH
Q 001637 443 MDGLFKAGRPSEAEDTFNLILKH----NLV--S-NHVTYSSLIDGCCKLGDMSAAESILQEMEEK--HVVP--NVITYSS 511 (1039)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~ 511 (1039)
...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 66777788888888877765542 211 1 2223445555666678888888777766542 1111 1233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH---HHHHHH
Q 001637 512 IINGYVKKGMLDEAANVMRKMKSQNIM-PNVFIF-----AALIDGYFKAGKQEVAFDLYNDLKLVGMEENN---YILDIF 582 (1039)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l 582 (1039)
+...+...|+.++|...+++....... .....+ ...+..+...|+.+.|...+............ ..+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 555666778888887777776432100 000111 01123334466666666665543321111000 012233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001637 583 VNYLKRHGKMKEANGLVVDMMSR----GLVPDR-VNYTSLMDGFFKVGKETAALNIAQEMTEK 640 (1039)
Q Consensus 583 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 640 (1039)
...+...|+.++|...+...... |...+. .+...+..++.+.|+.++|...+.+..+.
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44445555555555555554431 111111 13333444555555555555555555443
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=2.2e-07 Score=97.81 Aligned_cols=258 Identities=15% Similarity=0.125 Sum_probs=170.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHH
Q 001637 620 GFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLE 697 (1039)
Q Consensus 620 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 697 (1039)
-+.+.|++.+|.-.|+..++++ |.+..+|..|.......++- .|+..+.+.++. .|+ ..+...|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 3456677778887888777765 66777787777777777776 777777777775 554 667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHH
Q 001637 698 IAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLV 777 (1039)
Q Consensus 698 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 777 (1039)
+|++.++.-+... |. |..+..+ ...+++..- +-.++...+..+ ...+++-+.
T Consensus 371 ~Al~~L~~Wi~~~--p~---y~~l~~a-~~~~~~~~~----------~s~~~~~~l~~i------------~~~fLeaa~ 422 (579)
T KOG1125|consen 371 QALKMLDKWIRNK--PK---YVHLVSA-GENEDFENT----------KSFLDSSHLAHI------------QELFLEAAR 422 (579)
T ss_pred HHHHHHHHHHHhC--cc---chhcccc-CccccccCC----------cCCCCHHHHHHH------------HHHHHHHHH
Confidence 7877777665431 11 1111000 000000000 001111111111 122233334
Q ss_pred HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hh
Q 001637 778 DMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TA 856 (1039)
Q Consensus 778 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~ 856 (1039)
..+...|..+...|+-+|--.|+++.|+.+|+..+... +-|...||-|+..++...+.++|++.|+++++ +.|. +.
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR 499 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR 499 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee
Confidence 44445688889999999999999999999999998862 34688999999999999999999999999999 8898 55
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHh---CCC------CCCHHHHHHHHHHHhccCCHHHHHH
Q 001637 857 TYNILLGIFLGTGSTKEVDDLFGEMKK---RGL------KPDASTYDTLISGHAKIGNKKESIQ 911 (1039)
Q Consensus 857 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~p~~~~~~~l~~~~~~~g~~~~A~~ 911 (1039)
+...|.-.|...|.++||.+.|-.++. .+. .++..+|.+|=.++.-.++.|-+.+
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 666688889999999999999888764 111 1123456665555666666654443
No 99
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=1.3e-06 Score=90.91 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=157.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCC-hhHHHHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSS-HINKALATYTQMINEGVSPN-TATYNILLGI 864 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 864 (1039)
++..+-.++...++.++|+.+.+++++.. +-+..+|+.....+...| ++++++..++++++ ..|+ ..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHH
Confidence 44445555667778888888888888752 224567776666666666 57888888888887 4554 5566666656
Q ss_pred HHcCCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhc---
Q 001637 865 FLGTGST--KEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKE--- 938 (1039)
Q Consensus 865 ~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--- 938 (1039)
+.+.|+. +++..+++++++.. +-+...|.-...++.+.|++++|++.++++++ ..| |...|+.....+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhcccc
Confidence 6666653 67788888888642 33556777777788888899999999999988 455 778888877666554
Q ss_pred CC----HHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHH
Q 001637 939 GK----MHQARELLKEMQARGRNP-NSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCF 1013 (1039)
Q Consensus 939 g~----~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 1013 (1039)
|. .++++++..+++. +.| |...|+.+...+...+.. .+...+|.+.+.+..+.+ +.+......+
T Consensus 193 ~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~--------l~~~~~~~~~~~~~~~~~-~~s~~al~~l 261 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEA--------LVSDPEVSSVCLEVLSKD-SNHVFALSDL 261 (320)
T ss_pred ccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcc--------cccchhHHHHHHHhhccc-CCcHHHHHHH
Confidence 22 2567888888888 677 677888888777653221 112345777777766532 2334477788
Q ss_pred HHHhhCCC------------------ChHHHHHHHHHHh
Q 001637 1014 SSTFARPG------------------KKADAQRLLQEFY 1034 (1039)
Q Consensus 1014 ~~~l~~~G------------------~~~eA~~~~~~~~ 1034 (1039)
++++.... ..++|.++++.+.
T Consensus 262 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 262 LDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 88887632 3477888888774
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.86 E-value=1e-05 Score=88.65 Aligned_cols=200 Identities=13% Similarity=0.027 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC--HHHHHHHHH
Q 001637 368 TYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGV-AFD--VVVYTTLMD 444 (1039)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~--~~~~~~l~~ 444 (1039)
....+...+...|++++|.+.+++..+.... +...+..+..++...|++++|...+++...... .++ ...|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3334445566667777777777776665322 445566666666677777777777666665422 112 223445666
Q ss_pred HHHHcCChhHHHHHHHHHHHCCC-cccHHHH-H--HHHHHHHhcCChHHHHHH---HHHHHhCCC-CCCHHhHHHHHHHH
Q 001637 445 GLFKAGRPSEAEDTFNLILKHNL-VSNHVTY-S--SLIDGCCKLGDMSAAESI---LQEMEEKHV-VPNVITYSSIINGY 516 (1039)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~~~~~~-~~~~~~~~~li~~~ 516 (1039)
.+...|++++|.++++....... .+..... + .++.-+...|....+.+. ......... ............++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 67777777777777776643321 1111111 1 222333333433333222 111111100 00112222455566
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001637 517 VKKGMLDEAANVMRKMKSQNIMP--------NVFIFAALIDGYFKAGKQEVAFDLYNDLK 568 (1039)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 568 (1039)
...|+.++|..+++.+....... .........-++...|++++|.+.+....
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77788888888887775532110 01111112223345666666666666554
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=3.5e-05 Score=75.69 Aligned_cols=326 Identities=13% Similarity=0.098 Sum_probs=199.2
Q ss_pred CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 001637 365 DVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVV-VYTTLM 443 (1039)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~ 443 (1039)
++.-..-+...+...|++..|+.-|....+.++. +..++.--...|...|+...|+.-+.++++. .||-. +-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 4444556777788889999999999888875321 3334445556777888888888888888776 44432 222334
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHH
Q 001637 444 DGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLD 523 (1039)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 523 (1039)
..+.+.|.++.|..-|+.++++....+ ...+|.+-+..+.+ .......+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~---------------~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNG---------------LVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcc---------------hhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchh
Confidence 567788889999888888887742111 11111111111111 111222334445567777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001637 524 EAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMM 603 (1039)
Q Consensus 524 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 603 (1039)
.|+.....+++. .+.|...+..-..+|...|++..|+.=++...+.. ..+...+..+...+...|+.+.++..+.+.+
T Consensus 173 ~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 788888777775 34566667777777888888877777666655443 2334444455666777778887777777777
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCCC--H
Q 001637 604 SRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPD--L 680 (1039)
Q Consensus 604 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~--~ 680 (1039)
+ +.||....-. .|-+ +.+..+.++.|.+ ..+.+.+ ++.+..+...+. +|. .
T Consensus 251 K--ldpdHK~Cf~---~YKk---lkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~--ep~~~~ 304 (504)
T KOG0624|consen 251 K--LDPDHKLCFP---FYKK---LKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKN--EPEETM 304 (504)
T ss_pred c--cCcchhhHHH---HHHH---HHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhc--CCcccc
Confidence 6 5666542211 1222 2222222333322 1233455 566666666654 333 2
Q ss_pred h---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 001637 681 A---TYNIMISASCKQGNLEIAFKLWDEMRRNGIMPN-SVTCNVLVGGLVGFGEIEKAMDVLNDMLVW 744 (1039)
Q Consensus 681 ~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 744 (1039)
. .+..+-.++...+++-+|++.-.+.++. .|+ +.++.--..+|.-...++.|+.-|+.+.+.
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 2 2334455667778888888888877763 454 777777788888888888888888888754
No 102
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.84 E-value=0.00051 Score=76.90 Aligned_cols=223 Identities=14% Similarity=0.113 Sum_probs=141.5
Q ss_pred HccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCC
Q 001637 286 CKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAY--CKQQALEEALGLYEEMVKYGFL 363 (1039)
Q Consensus 286 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~g~~ 363 (1039)
...+++..|+....++++. .||. .|..++.++ .|.|+.++|..+++.....+..
T Consensus 20 ld~~qfkkal~~~~kllkk-----------------------~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~ 75 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK-----------------------HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT 75 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH-----------------------CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC
Confidence 4567888899998888873 3554 244455554 4889999999888888766555
Q ss_pred CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001637 364 PDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLM 443 (1039)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 443 (1039)
|..|...+-.+|...|++++|..+|+..... .|+......+..+|.+.+++.+-.+.--++-+. .+-+...+-+++
T Consensus 76 -D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 76 -DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVI 151 (932)
T ss_pred -chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHH
Confidence 8889999999999999999999999998875 567777778888888888877654444444433 222566666677
Q ss_pred HHHHHcCC----------hhHHHHHHHHHHHCC-CcccHHHHHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCCHHhHHH
Q 001637 444 DGLFKAGR----------PSEAEDTFNLILKHN-LVSNHVTYSSLIDGCCKLGDMSAAESILQ-EMEEKHVVPNVITYSS 511 (1039)
Q Consensus 444 ~~~~~~g~----------~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~ 511 (1039)
+...+.-. ..-|.+.++.+.+.+ .--+..-...-.......|++++|..++. ...+.-...+...-+.
T Consensus 152 Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~ 231 (932)
T KOG2053|consen 152 SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENK 231 (932)
T ss_pred HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHH
Confidence 66654421 123445555555443 11111111112233445666777777763 2223222223444445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC
Q 001637 512 IINGYVKKGMLDEAANVMRKMKSQN 536 (1039)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~~~~ 536 (1039)
-+..+...+++.+..++-.++...|
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhC
Confidence 5666667777777777777776664
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=4.5e-07 Score=95.53 Aligned_cols=228 Identities=16% Similarity=0.072 Sum_probs=150.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHH-H
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNIL-L 862 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-~ 862 (1039)
+..+|--|+..-...++-..|+..+++..+.. +.+....-+|.-.|...|.-.+|+.++++.+.. .|.......- .
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~--~p~y~~l~~a~~ 394 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRN--KPKYVHLVSAGE 394 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CccchhccccCc
Confidence 45566666666666666666666666666642 223555555666666666666666666666542 2211000000 0
Q ss_pred -------HHHHcCCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHH
Q 001637 863 -------GIFLGTGSTKEVDDLFGEMK-KRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIG 933 (1039)
Q Consensus 863 -------~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 933 (1039)
........+....++|-++. +.+..+|..++..|+-.|.-.|++++|+..|+.++. ..| |...||-|+.
T Consensus 395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGA 472 (579)
T ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhH
Confidence 01111122334445555555 466567888888898889999999999999999998 788 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHh---CCC------
Q 001637 934 DFAKEGKMHQARELLKEMQARGRNPNSS-TYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNE---KGF------ 1003 (1039)
Q Consensus 934 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~------ 1003 (1039)
.++...+.++|+..|.++++ ++|+.+ +.+.|+-+|. ..|.|+||.++|-+++. ++.
T Consensus 473 tLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~m------------NlG~ykEA~~hlL~AL~mq~ks~~~~~~~ 538 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCM------------NLGAYKEAVKHLLEALSMQRKSRNHNKAP 538 (579)
T ss_pred HhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhh------------hhhhHHHHHHHHHHHHHhhhcccccccCC
Confidence 99998999999999999999 999743 5556665665 45668899988887742 211
Q ss_pred CCChhhHHHHHHHhhCCCChHHHHHHH
Q 001637 1004 VPCESTQTCFSSTFARPGKKADAQRLL 1030 (1039)
Q Consensus 1004 ~p~~~~~~~l~~~l~~~G~~~eA~~~~ 1030 (1039)
.++..+|..|=.+|.-.++.|-+.+..
T Consensus 539 ~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 539 MASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred cchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 223347877777777777766555443
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=0.00036 Score=73.38 Aligned_cols=297 Identities=14% Similarity=0.184 Sum_probs=175.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH------HHHHH-------HhcCChhhHHHHHHHHHh--CCCCCCHHH--
Q 001637 341 YCKQQALEEALGLYEEMVKYGFLPDVVTYSS------IMGGL-------CKCGRLAEAKMLFREMEK--MGVDPNHVS-- 403 (1039)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~~~~~~-- 403 (1039)
|..+.+++..++++++++...+..=...|+- =|+.. -+...+..|.+++++... .|...+..+
T Consensus 147 ~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp 226 (656)
T KOG1914|consen 147 YEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP 226 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 5556678888889988886533311222221 11111 123457778888877753 343322222
Q ss_pred -------------HHHHHHHHHhcCCH--------hHHHHHHHHH-HHcCCCCCHHHHH-----HHHHHHHHcCC-----
Q 001637 404 -------------YTTLIDSLFKAGCA--------MEAFALQSQM-MVRGVAFDVVVYT-----TLMDGLFKAGR----- 451 (1039)
Q Consensus 404 -------------~~~li~~~~~~g~~--------~~A~~~~~~m-~~~g~~~~~~~~~-----~l~~~~~~~g~----- 451 (1039)
|-.+|.--..++-- ....-.+++. .-.+..|++.... ...+.+...|+
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch
Confidence 55555433222211 0111112222 2224444433211 11223334444
Q ss_pred --hhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHHcCCHHHH
Q 001637 452 --PSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLG---DMSAAESILQEMEEK-HVVPNVITYSSIINGYVKKGMLDEA 525 (1039)
Q Consensus 452 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A 525 (1039)
-+++..++++.+..-...+..+|..+.+.--..- ..+.....+++++.. .+.| ..+|..+++.-.+..-+..|
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHH
Confidence 3456666666655433334445554443222111 244555566666554 2333 35678888888888889999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001637 526 ANVMRKMKSQNIMP-NVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMS 604 (1039)
Q Consensus 526 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 604 (1039)
..+|.+..+.+..+ ++...++++.-|| .++.+-|.++|+--.+. ...++......+..+...++-..|..+|+..+.
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 99999998887666 6778888888776 47788889988875543 344555666778888888888889999998888
Q ss_pred cCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001637 605 RGLVPDR--VNYTSLMDGFFKVGKETAALNIAQEMTEK 640 (1039)
Q Consensus 605 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 640 (1039)
.++.||. ..|..++.--.+-|++..++++-+++...
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 7666554 47888888888888888888877776543
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.1e-05 Score=77.33 Aligned_cols=313 Identities=13% Similarity=0.020 Sum_probs=173.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHH
Q 001637 71 FCTLIQLYLTCGRFAKASDTFFTMRNFNIIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINV-LVHSFC 149 (1039)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~ 149 (1039)
|+..+..+.+..++.+|+++...-.+.++ .+......|..+|-...++..|...|+++-.. .|...-|.. -..++-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 56677778889999999999988877764 35667788888999999999999999998663 344332222 234556
Q ss_pred hcCChHHHHHHHHhCCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHH
Q 001637 150 KVGNLSFALDFLRNVDIDVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMD 229 (1039)
Q Consensus 150 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 229 (1039)
+.+.+.+|+.+...++-.++ ..+..+. +-. . .....+++..++.+.+
T Consensus 90 ~A~i~ADALrV~~~~~D~~~--L~~~~lq-------------Lqa-A-----------------IkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPA--LHSRVLQ-------------LQA-A-----------------IKYSEGDLPGSRSLVE 136 (459)
T ss_pred HhcccHHHHHHHHHhcCCHH--HHHHHHH-------------HHH-H-----------------HhcccccCcchHHHHH
Confidence 67777777777665532111 1111110 000 0 0012233333444333
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCC
Q 001637 230 NLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRRE-GVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKER 308 (1039)
Q Consensus 230 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 308 (1039)
.... +.+..+.+...-...+.|++++|++-|....+. |+.| .+.||..+ +..+.|+++.|+++..++++.+...
T Consensus 137 Qlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 137 QLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred hccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 3311 123333444444555666666666666665553 4443 33454333 3344566666666666666655444
Q ss_pred cccccccccccccCCCcccC-CCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhc
Q 001637 309 DADTSKADNFENENGNVEVE-PNL-------ITHTTLISAYCKQQALEEALGLYEEMVKY-GFLPDVVTYSSIMGGLCKC 379 (1039)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~ 379 (1039)
+++..---..+...- ..+. |-. ..+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-. --.
T Consensus 212 HPElgIGm~tegiDv-rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~ 289 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDV-RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMD 289 (459)
T ss_pred CCccCccceeccCch-hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-ccc
Confidence 333211000000000 0000 111 12333334456788888888888877532 234466666554322 224
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 001637 380 GRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQM 427 (1039)
Q Consensus 380 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (1039)
+++.+..+-+.-+....+- -..||..++-.||++.-++-|-.++.+-
T Consensus 290 ~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 5566666666666665432 3567888888888888888777776553
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=8.8e-06 Score=78.10 Aligned_cols=314 Identities=11% Similarity=0.096 Sum_probs=147.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 001637 334 HTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTT-LIDSLF 412 (1039)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~ 412 (1039)
+++.+..+.+..++.+|++++..-.+...+ +....+.|..+|....++..|-+.++++-.. .|...-|.- -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 445555556666777777776666555321 5555666666666666777776666666543 233222211 123334
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHH
Q 001637 413 KAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAES 492 (1039)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (1039)
+.+.+.+|+.+...|... ++...-..-+. .......+++..+..
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLq---------------------------------aAIkYse~Dl~g~rs 133 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQ---------------------------------AAIKYSEGDLPGSRS 133 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHH---------------------------------HHHhcccccCcchHH
Confidence 445555555555544421 01110000000 011123344555555
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001637 493 ILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQN-IMPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVG 571 (1039)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 571 (1039)
+.++....| +..+.+.......+.|++++|.+-|+...+-+ .. ....|+.-+. ..+.++++.|++...++.+.|
T Consensus 134 LveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 134 LVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhh
Confidence 555444221 23333333344445555555555555554432 22 2334443332 234455555555555555544
Q ss_pred CCccHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH
Q 001637 572 MEENNYILD----IFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEK-NIPFDV 646 (1039)
Q Consensus 572 ~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 646 (1039)
++..+..-- -.++. ...|+ -..+.... =...++.-...+.+.|+++.|.+.+-.|.-+ ....|+
T Consensus 209 ~r~HPElgIGm~tegiDv-rsvgN---t~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDV-RSVGN---TLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred hhcCCccCccceeccCch-hcccc---hHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 432221100 00000 00000 00000000 0112333334567788888888888777533 123456
Q ss_pred HHHHHHHHHHHhcCch-HHHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 647 TAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTP-DLATYNIMISASCKQGNLEIAFKLWDE 705 (1039)
Q Consensus 647 ~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 705 (1039)
+|...+.-.-.. +++ +..+-+.-++.. .| ...|+..++-.||+..-++.|-.++.+
T Consensus 278 vTLHN~Al~n~~-~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 278 VTLHNQALMNMD-ARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hhhhHHHHhccc-CCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 666555433222 223 444444444444 33 356777788888888888888777654
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=4.7e-07 Score=92.84 Aligned_cols=252 Identities=15% Similarity=0.151 Sum_probs=150.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHH
Q 001637 690 SCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVI 769 (1039)
Q Consensus 690 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 769 (1039)
+.-.|++..++.-.+ ........+......+.+++...|+++.++. ++.. +-.|....+..+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~-~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKK-SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-T-TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---Hhcc-CCChhHHHHHHHHHHHhCccchHHH
Confidence 344677777775554 2222111124445566777777787665443 2222 2255555555554444443444444
Q ss_pred HHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 770 LQMHERLVDMGVR-LNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 770 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
..-.+..+..... .+..+......+|...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4333333222222 23333444455677788888888887653 2455556667788888888888888888887
Q ss_pred CCCCCChhHHHHHHHHHH----cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-
Q 001637 849 EGVSPNTATYNILLGIFL----GTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP- 923 (1039)
Q Consensus 849 ~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 923 (1039)
...|.. ...+..++. ..+.+++|..+|+++.+. ..++..+.+.+..+....|++++|.+++++.+. ..|
T Consensus 160 --~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~ 233 (290)
T PF04733_consen 160 --IDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPN 233 (290)
T ss_dssp --CSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CC
T ss_pred --cCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccC
Confidence 445532 333333332 234688899999987753 457777888888888888999999998888876 345
Q ss_pred ChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCh
Q 001637 924 KTSTYNVLIGDFAKEGKM-HQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 924 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~ 960 (1039)
++.+...++-...-.|+. +.+.+++.++.. ..|+.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h 269 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTS
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCC
Confidence 667777777777777877 667788888887 56764
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=9.1e-07 Score=95.71 Aligned_cols=214 Identities=14% Similarity=0.148 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFL 866 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 866 (1039)
.-..+...+...|-..+|..+|++.. .|...+-.|...|+..+|-++..+-++ -+||+..|..++++..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 33444555555555555555555442 233444455555555555555444444 3445555555555555
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHH
Q 001637 867 GTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQAR 945 (1039)
Q Consensus 867 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 945 (1039)
...-+++|.++.+..... .-..+.......++++++.+.++...+ +.| -..+|..++.+..+.++++.|.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHH
Confidence 544555555555443321 001111112234555555555555544 334 4455555555555555555555
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhCCCChH
Q 001637 946 ELLKEMQARGRNPN-SSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSSTFARPGKKA 1024 (1039)
Q Consensus 946 ~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~l~~~G~~~ 1024 (1039)
+.|..-+. +.|| ...|+++..+|.+.++ ..+|...+.++.+.++ ....+|...--+.-..|.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~------------k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKK------------KKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhh------------hHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHH
Confidence 55555555 4553 3345555555444332 2445555555554442 22223333333344555555
Q ss_pred HHHHHHHHHhh
Q 001637 1025 DAQRLLQEFYK 1035 (1039)
Q Consensus 1025 eA~~~~~~~~~ 1035 (1039)
+|++.+.++++
T Consensus 605 da~~A~~rll~ 615 (777)
T KOG1128|consen 605 DAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=6.4e-05 Score=93.84 Aligned_cols=238 Identities=14% Similarity=0.092 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCC--C-CH
Q 001637 334 HTTLISAYCKQQALEEALGLYEEMVK----YGFL-PDVVTYSSIMGGLCKCGRLAEAKMLFREMEKM----GVD--P-NH 401 (1039)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~ 401 (1039)
.+.+...+...|++++|...+++... .|.. ....++..+...+...|++++|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 34444455555555555555555432 1211 11223334444455555555555555444321 111 0 12
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCcccHHH
Q 001637 402 VSYTTLIDSLFKAGCAMEAFALQSQMMVR----GVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKH----NLVSNHVT 473 (1039)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~ 473 (1039)
..+..+...+...|++++|...+.+.... +.......+..+...+...|++++|.+.+...... +.......
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 22333444445556666665555554332 11111223334445555666666666666555321 10000000
Q ss_pred H--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHH
Q 001637 474 Y--SSLIDGCCKLGDMSAAESILQEMEEKHVVPN---VITYSSIINGYVKKGMLDEAANVMRKMKSQ----NIMPN-VFI 543 (1039)
Q Consensus 474 ~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~ 543 (1039)
. ...+..+...|+.+.|.+.+........... ...+..+..++...|+.++|...+++.... |...+ ..+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0 1112334446677777776655443211111 111345566677777777777777766542 22222 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001637 544 FAALIDGYFKAGKQEVAFDLYNDLKLVG 571 (1039)
Q Consensus 544 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 571 (1039)
...+..++.+.|+.++|...+.+.....
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5566677778888888888887777643
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.67 E-value=0.00095 Score=70.36 Aligned_cols=444 Identities=11% Similarity=0.131 Sum_probs=236.1
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001637 468 VSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAAL 547 (1039)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 547 (1039)
+.|..+|..||.-+... .++++.+.++++...-+ .....|..-|..-.+..+++....+|.+-+..-+ +...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP-SSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 66888899998866655 88899999998887633 3667888888888888999999999988776422 45555555
Q ss_pred HHHHHh-cCCHHHH----HHHHHHH-HHcCCCcc-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCCCCH
Q 001637 548 IDGYFK-AGKQEVA----FDLYNDL-KLVGMEEN-NYILDIFVNYLK---------RHGKMKEANGLVVDMMSRGLVPDR 611 (1039)
Q Consensus 548 i~~~~~-~g~~~~a----~~~~~~~-~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~ 611 (1039)
++--.+ .|+...+ .+.|+-. .+.|+++- ..+|+-.+..+. .+.+++....++.+++...+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 543222 2333222 2223322 23444432 234444444432 222334444455555432111111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-h-HHHHHHHHHHh--cCCCCCH-------
Q 001637 612 VNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGK-C-EVQSVYSGMKE--MGLTPDL------- 680 (1039)
Q Consensus 612 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~-~a~~~~~~~~~--~~~~p~~------- 680 (1039)
..|+-... ++..+.. .+-.-++ ...+. + .|..+++++.. .|++.+.
T Consensus 173 kLW~DY~~-------fE~~IN~-------------~tarK~i---~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 173 KLWKDYEA-------FEQEINI-------------ITARKFI---GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred HHHHHHHH-------HHHHHHH-------------HHHHHHH---HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 12221110 0000000 0000000 00111 1 23333333321 1211110
Q ss_pred --------hHHHHHHHHHHhcC------CH--HHHHHHHHHHH-HcCCCCCHHH-----HHHHHHHHHccCC-------H
Q 001637 681 --------ATYNIMISASCKQG------NL--EIAFKLWDEMR-RNGIMPNSVT-----CNVLVGGLVGFGE-------I 731 (1039)
Q Consensus 681 --------~~~~~l~~~~~~~g------~~--~~A~~~~~~m~-~~~~~p~~~~-----~~~l~~~~~~~g~-------~ 731 (1039)
..|..+|..-...+ .. ....-.+++.. -.+..|+..- +....+.+.+.|+ .
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 11222222111110 00 01111122221 1222332111 0111122333333 4
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHhhcc---CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 001637 732 EKAMDVLNDMLVWGFSPTSTTIKILLDTSSKS---RRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVL 808 (1039)
Q Consensus 732 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 808 (1039)
+++..+++..+..-..-+..++..+..--... ...+....++++++..-...-..+|..+++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 56666666665422222222332222211111 125556667777666432223347777888888888899999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 001637 809 EDMRGRGIMM-DTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGL 886 (1039)
Q Consensus 809 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 886 (1039)
.+..+.+..+ ++...++++.-| ..++.+-|..+|+--++ --+| +.--...++-+++.++=..|..+|++++..++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999887776 677788887665 56789999999997655 2344 34445677888899999999999999998766
Q ss_pred CCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCc----cChHHHHHHHHHHHhcCCHH
Q 001637 887 KPDA--STYDTLISGHAKIGNKKESIQIYCEMITKGYV----PKTSTYNVLIGDFAKEGKMH 942 (1039)
Q Consensus 887 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~ 942 (1039)
.|+. .+|..+++-=..-|+...+.++-++.... ++ |.-..-..+++.|.-.+.+.
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhccccc
Confidence 6654 78999999888999999999888877653 33 11122334556666555543
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.66 E-value=0.0017 Score=72.91 Aligned_cols=220 Identities=14% Similarity=0.192 Sum_probs=107.9
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHH
Q 001637 415 GCAMEAFALQSQMMVRGVAFDVVVYTTLMDG--LFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAES 492 (1039)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (1039)
+++.+|+....++.++.+ +. .|..++.+ +.+.|+.++|..+++.....+ ..|..|...+-.+|-..++.++|..
T Consensus 23 ~qfkkal~~~~kllkk~P--n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHP--NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHHCC--Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 445555555555554421 21 12222222 345566666665555544433 2255566666666666666666666
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HHHHHH
Q 001637 493 ILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAG-K---------QEVAFD 562 (1039)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~~a~~ 562 (1039)
+++..... .|+......+..+|.+-+.+.+-.+.--++-+. .+-....+-++++.+.+.- . ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 66666554 344555555556666655554433333333221 2223344444444443311 1 112333
Q ss_pred HHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001637 563 LYNDLKLVG-MEENNYILDIFVNYLKRHGKMKEANGLVV-DMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEK 640 (1039)
Q Consensus 563 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 640 (1039)
.++.+.+.+ ...+..-.......+...|++++|..++. ...+.-...+...-+.-++.+...+++.+-.++..++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 444444332 22222222233334556677777777763 3333222223334445566777777777777777777766
Q ss_pred C
Q 001637 641 N 641 (1039)
Q Consensus 641 ~ 641 (1039)
+
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 5
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=1.1e-05 Score=93.57 Aligned_cols=188 Identities=16% Similarity=0.121 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001637 333 THTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLF 412 (1039)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 412 (1039)
.|.++++....-|.-+...++|+++.+.- .--.+|..|...|.+.+++++|-++++.|.+. +......|...+..+.
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLL 1575 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHh
Confidence 34444444444444444455555554431 11233444555555555555555555555432 1123444555555555
Q ss_pred hcCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHH
Q 001637 413 KAGCAMEAFALQSQMMVRGVA-FDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAE 491 (1039)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 491 (1039)
+..+-++|..++.+.++.=+. -.+......+..-.+.|+.+.++.+|+-..... |-....|+..|++-.++|+.+.++
T Consensus 1576 ~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHH
Confidence 555555555555444433111 012222333333345555555555555444432 222334555555555555555555
Q ss_pred HHHHHHHhCCCCCCH--HhHHHHHHHHHHcCCHHH
Q 001637 492 SILQEMEEKHVVPNV--ITYSSIINGYVKKGMLDE 524 (1039)
Q Consensus 492 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 524 (1039)
.+|+++...++.|-. ..|...+..--..|+-..
T Consensus 1655 ~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1655 DLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 555555555443321 234444444444444333
No 113
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=9.4e-06 Score=84.50 Aligned_cols=228 Identities=13% Similarity=0.127 Sum_probs=162.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hH
Q 001637 762 KSRRGDVILQMHERLVDMGVRL-NQAYYNSLITILCRLG-MTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSH--IN 837 (1039)
Q Consensus 762 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 837 (1039)
..+..+.|+...+.+++. .| +..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|. .+
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 346677788888888775 44 5568888888888888 6799999999998863 4467788877767766676 37
Q ss_pred HHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CC----HHHH
Q 001637 838 KALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKI---GN----KKES 909 (1039)
Q Consensus 838 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A 909 (1039)
+++++++++++ ..| +..+|.....++...|+++++++.++++++.+. -+...|+.....+.+. |. .+++
T Consensus 126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHH
Confidence 88999999998 667 478888888999999999999999999998542 2344555444444443 22 3578
Q ss_pred HHHHHHHHHCCCcc-ChHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCCCc-hhhHH
Q 001637 910 IQIYCEMITKGYVP-KTSTYNVLIGDFAKE----GKMHQARELLKEMQARGRNP-NSSTYDILIGGWCELSNEP-ELDRT 982 (1039)
Q Consensus 910 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~-~~~~~ 982 (1039)
+++..+++. ..| |...|+.+...|... ++..+|.+.+.+..+ ..| ++.....|+..|++..... +.+..
T Consensus 203 l~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 203 LKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 888888887 677 789999999988873 456779999999887 456 5667888888887532110 10000
Q ss_pred H-----hHhHHHHHHHHHHHHH
Q 001637 983 L-----ILSYRAEAKKLFMEMN 999 (1039)
Q Consensus 983 ~-----~~~~~~~a~~~~~~~~ 999 (1039)
+ .....++|.++++.+.
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhccccccccHHHHHHHHHHHH
Confidence 0 0012367888888874
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=4e-06 Score=79.95 Aligned_cols=155 Identities=12% Similarity=0.111 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHh
Q 001637 859 NILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAK 937 (1039)
Q Consensus 859 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 937 (1039)
..+...+...|+-+.+..+..+.... ...|......++....+.|++.+|+..+.++.. ..| |...|+.++-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33444555555555555555544321 122333334455555566666666666666655 333 55666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 001637 938 EGKMHQARELLKEMQARGRNP-NSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSST 1016 (1039)
Q Consensus 938 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 1016 (1039)
.|+.++|..-+.++++ +.| ++...++++..+.-. |+++.|..++.++...+ .-|..+-..++.+
T Consensus 147 ~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~------------gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~ 211 (257)
T COG5010 147 LGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLR------------GDLEDAETLLLPAYLSP-AADSRVRQNLALV 211 (257)
T ss_pred ccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHc------------CCHHHHHHHHHHHHhCC-CCchHHHHHHHHH
Confidence 6666666666666666 555 344555555444322 23455666666664432 2244455566666
Q ss_pred hhCCCChHHHHHHHH
Q 001637 1017 FARPGKKADAQRLLQ 1031 (1039)
Q Consensus 1017 l~~~G~~~eA~~~~~ 1031 (1039)
....|++.+|+.+..
T Consensus 212 ~~~~g~~~~A~~i~~ 226 (257)
T COG5010 212 VGLQGDFREAEDIAV 226 (257)
T ss_pred HhhcCChHHHHhhcc
Confidence 666666666665544
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=2.9e-06 Score=86.35 Aligned_cols=164 Identities=16% Similarity=0.142 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hH
Q 001637 785 QAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDT---ITYNALMRGYWVSSHINKALATYTQMINEGVSPNT----AT 857 (1039)
Q Consensus 785 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~ 857 (1039)
...+..++..|...|++++|...|+++.... +.++ .++..+...+...|++++|+..|+++++ ..|+. .+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 4455555556666666666666666665531 1111 3445555566666666666666666665 33321 13
Q ss_pred HHHHHHHHHcC--------CChHHHHHHHHHHHhCCCCCCH-HH-----------------HHHHHHHHhccCCHHHHHH
Q 001637 858 YNILLGIFLGT--------GSTKEVDDLFGEMKKRGLKPDA-ST-----------------YDTLISGHAKIGNKKESIQ 911 (1039)
Q Consensus 858 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~-----------------~~~l~~~~~~~g~~~~A~~ 911 (1039)
+..+..++... |++++|.+.++++.+. .|+. .. ...+...+.+.|++++|+.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 34444444433 5566666666666542 1221 11 1245566888999999999
Q ss_pred HHHHHHHCCC-cc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 912 IYCEMITKGY-VP-KTSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 912 ~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
.++++++..- .| ....+..++.+|.+.|++++|..+++.+..
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999987411 12 346888999999999999999999998877
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=1.9e-06 Score=78.67 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=91.5
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 001637 841 ATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKG 920 (1039)
Q Consensus 841 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 920 (1039)
.+|++.++ +.|+. +..+..++...|++++|...|+.++... +.+...|..++.++.+.|++++|+..|+++++
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 45666666 56664 4456778888999999999999988742 34667778888889999999999999999998
Q ss_pred Ccc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 001637 921 YVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTY 963 (1039)
Q Consensus 921 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 963 (1039)
..| ++..+..++.++...|++++|++.|+++++ +.|+...+
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~ 128 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASW 128 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHH
Confidence 667 778899999999999999999999999999 77864433
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=4.7e-08 Score=62.46 Aligned_cols=32 Identities=47% Similarity=0.939 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001637 235 GVCRDVIGFNILIDGYCKSGDLSSALKLMEGM 266 (1039)
Q Consensus 235 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 266 (1039)
|..||+++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666665
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=9e-08 Score=61.16 Aligned_cols=32 Identities=56% Similarity=0.979 Sum_probs=15.1
Q ss_pred CCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 001637 361 GFLPDVVTYSSIMGGLCKCGRLAEAKMLFREM 392 (1039)
Q Consensus 361 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 392 (1039)
|+.||++||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=1e-05 Score=78.30 Aligned_cols=151 Identities=11% Similarity=0.115 Sum_probs=116.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCC
Q 001637 792 ITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGS 870 (1039)
Q Consensus 792 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 870 (1039)
+..|...|+++......+.+... . ..+...++.++++..+++.++ ..| +...|..+...+...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 45788889888875555433221 0 022235677889999999888 556 58889999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCC--HHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHH
Q 001637 871 TKEVDDLFGEMKKRGLKPDASTYDTLISGH-AKIGN--KKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARE 946 (1039)
Q Consensus 871 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 946 (1039)
+++|...|+++.+.. +.+...+..+..++ ...|+ .++|.++++++++ ..| +..++..++..+.+.|++++|+.
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999843 33566777777764 67777 5999999999998 677 77889999999999999999999
Q ss_pred HHHHHHHCCCCCCh
Q 001637 947 LLKEMQARGRNPNS 960 (1039)
Q Consensus 947 ~~~~~~~~g~~p~~ 960 (1039)
.++++++.. +|+.
T Consensus 166 ~~~~aL~l~-~~~~ 178 (198)
T PRK10370 166 LWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHhhC-CCCc
Confidence 999999942 4444
No 120
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.53 E-value=3.8e-06 Score=86.23 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=65.8
Q ss_pred HHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHccCCH
Q 001637 215 FCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSY---NTLISGFCKRGDF 291 (1039)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~---~~li~~~~~~g~~ 291 (1039)
+...|++++|.++.... .+.......+..|.+.++++.|.+.++.|.+. ..|.... .+.++.......+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchhH
Confidence 33445555555443321 23344444555555555555555555555543 2232211 1112222222345
Q ss_pred HHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 001637 292 VKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSS 371 (1039)
Q Consensus 292 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 371 (1039)
.+|.-+|+++... ..+++.+.|.+..++...|++++|.+++.+....... |..+...
T Consensus 184 ~~A~y~f~El~~~----------------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaN 240 (290)
T PF04733_consen 184 QDAFYIFEELSDK----------------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLAN 240 (290)
T ss_dssp CHHHHHHHHHHCC----------------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHH
T ss_pred HHHHHHHHHHHhc----------------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHH
Confidence 5555555555431 2244455555555555555555555555555443321 3444444
Q ss_pred HHHHHHhcCCh-hhHHHHHHHHHh
Q 001637 372 IMGGLCKCGRL-AEAKMLFREMEK 394 (1039)
Q Consensus 372 li~~~~~~g~~-~~A~~~~~~m~~ 394 (1039)
++.+....|+. +.+.+.+.++..
T Consensus 241 liv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 241 LIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555555554 334444444443
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=6.1e-06 Score=83.92 Aligned_cols=184 Identities=13% Similarity=0.028 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCCH-HH
Q 001637 819 DTITYNALMRGYWVSSHINKALATYTQMINEGVSPN----TATYNILLGIFLGTGSTKEVDDLFGEMKKR-GLKPDA-ST 892 (1039)
Q Consensus 819 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~ 892 (1039)
....+..++..+...|++++|+..|++++. ..|+ ..++..+..++...|++++|...++++.+. +-.|.. ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES--RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 455666666777777777777777777766 3443 134556666777777777777777777652 112221 12
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHHHHCCCccCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 001637 893 YDTLISGHAKI--------GNKKESIQIYCEMITKGYVPKT-STYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTY 963 (1039)
Q Consensus 893 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 963 (1039)
+..+..++... |+.++|.+.+++++. ..|+. ..+..+..... ..... . ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~~~-------~-------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRNRL-------A-------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHHHH-------H-------HHH
Confidence 33344444433 556666666666665 34432 22222211100 00000 0 000
Q ss_pred HHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCC-CC-ChhhHHHHHHHhhCCCChHHHHHHHHHHhhc
Q 001637 964 DILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGF-VP-CESTQTCFSSTFARPGKKADAQRLLQEFYKS 1036 (1039)
Q Consensus 964 ~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~l~~~G~~~eA~~~~~~~~~~ 1036 (1039)
..++..|. +.|.+.+|...++++.+... .| ..+.+..++.++.+.|++++|.++++.+.+.
T Consensus 170 ~~~a~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYL------------KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHH------------HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12233333 34557899999999976421 23 2458889999999999999999999977554
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=5.8e-06 Score=75.52 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 001637 823 YNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHA 901 (1039)
Q Consensus 823 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 901 (1039)
+......+...|++++|++.|++.+. +.| +...|..+..++...|++++|...|+++.+.. +.+...+..++.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 44445555566666666666666655 444 35555666666666666666666666666532 234455555666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCcc
Q 001637 902 KIGNKKESIQIYCEMITKGYVP 923 (1039)
Q Consensus 902 ~~g~~~~A~~~~~~~~~~~~~p 923 (1039)
..|+.++|++.|++.++ ..|
T Consensus 104 ~~g~~~eAi~~~~~Al~--~~p 123 (144)
T PRK15359 104 MMGEPGLAREAFQTAIK--MSY 123 (144)
T ss_pred HcCCHHHHHHHHHHHHH--hCC
Confidence 66666666666666665 455
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=7.8e-05 Score=86.78 Aligned_cols=247 Identities=14% Similarity=0.144 Sum_probs=150.7
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHH
Q 001637 713 PN-SVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSL 791 (1039)
Q Consensus 713 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 791 (1039)
|| ...|...+.-..+.++.++|.++.++++.. +.+... ..-..+|.++
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REe------------------------------eEKLNiWiA~ 1503 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREE------------------------------EEKLNIWIAY 1503 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchh------------------------------HHHHHHHHHH
Confidence 44 667777777788888888888888888753 211110 0012245555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCCh
Q 001637 792 ITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGST 871 (1039)
Q Consensus 792 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 871 (1039)
+++-...|.-+...++|+++.+. --....|..|...|.+.+++++|.++|+.|.+. ..-....|...++.+.+..+-
T Consensus 1504 lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1504 LNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred HhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHH
Confidence 55555556666666677766653 111334666666677777777777777777653 223456677777777777777
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 872 KEVDDLFGEMKKR-GLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKE 950 (1039)
Q Consensus 872 ~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 950 (1039)
+.|..++.++++. .-.-......-.+..-.+.|+.+.+..+|+..+.. ++-....|+..+..=.++|+.+.++.+|++
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 7777777777652 11112233344555556788888888888887763 222567788888888888888888888888
Q ss_pred HHHCCCCCChhhHHHHHHH-H-hhcCCCchhhHHHhHhHHHHHHHHHHHHH
Q 001637 951 MQARGRNPNSSTYDILIGG-W-CELSNEPELDRTLILSYRAEAKKLFMEMN 999 (1039)
Q Consensus 951 ~~~~g~~p~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 999 (1039)
++..++.|--.-+-.--|. | -+.|+...++.. -.+|.++.+.-.
T Consensus 1660 vi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V-----KarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1660 VIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV-----KARAKEYVESIK 1705 (1710)
T ss_pred HHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH-----HHHHHHHHHHhh
Confidence 8887777643322221111 1 123555555554 356777776553
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=3.8e-05 Score=83.60 Aligned_cols=220 Identities=12% Similarity=0.131 Sum_probs=161.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 001637 677 TPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKIL 756 (1039)
Q Consensus 677 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 756 (1039)
.|-...-..+...+.+.|-..+|..+|+++. .|...+.+|...|+..+|.++..+.++ -+||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3334445567778888888889988888764 466678888888888888888887775 46777777777
Q ss_pred HHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 001637 757 LDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHI 836 (1039)
Q Consensus 757 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 836 (1039)
+.......-+++|.++.+.... .+-..+.......++++++.+.|+.-.+.+ +--..+|..+.-+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 7776666666666666655432 122233333445788999999998877652 23467888888888888999
Q ss_pred HHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001637 837 NKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCE 915 (1039)
Q Consensus 837 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 915 (1039)
+.|.+.|..... +.|| ...|+.+..+|.+.|+..+|...++++.+.+.. +...|........+.|.+++|++.+.+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999998888 7786 678999999999999999999999999886533 333444344445588999999998888
Q ss_pred HHH
Q 001637 916 MIT 918 (1039)
Q Consensus 916 ~~~ 918 (1039)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 775
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.0001 Score=69.76 Aligned_cols=170 Identities=14% Similarity=0.161 Sum_probs=132.6
Q ss_pred CccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH
Q 001637 782 RLNQA-YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNI 860 (1039)
Q Consensus 782 ~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 860 (1039)
.++.. +|-.+.-+...+|+.+.|..+++++..+ .+.+...-..-..-+...|++++|+++|+..++.+ +-|.+++..
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 34433 4556666777899999999999998876 32222222222234567799999999999999854 235788888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcC
Q 001637 861 LLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEG 939 (1039)
Q Consensus 861 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 939 (1039)
-+-+.-..|+.-+|++-+....+. +..|...|.-+.+.|...|+++.|.--+++++- +.| ++..+-.+...+.-.|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHh
Confidence 888888899999999988888874 678999999999999999999999999999987 778 6666667776655544
Q ss_pred ---CHHHHHHHHHHHHHCCCCC
Q 001637 940 ---KMHQARELLKEMQARGRNP 958 (1039)
Q Consensus 940 ---~~~~A~~~~~~~~~~g~~p 958 (1039)
+++-|.+++.+.++ +.|
T Consensus 203 g~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 203 GAENLELARKYYERALK--LNP 222 (289)
T ss_pred hHHHHHHHHHHHHHHHH--hCh
Confidence 78899999999999 777
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=7.5e-05 Score=77.87 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHH
Q 001637 786 AYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGI 864 (1039)
Q Consensus 786 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 864 (1039)
..+.-..-.+...|++++|+..++.+... .+-|+..+......+...++.++|.+.+++++. ..|+ ......+..+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHH
Confidence 34444555677889999999999998876 444677777778889999999999999999998 7787 6667778899
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHH
Q 001637 865 FLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQA 944 (1039)
Q Consensus 865 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 944 (1039)
+.+.|++.+|+.+++..... .+.|...|..|..+|...|+..+|.....+. |.-.|+|++|
T Consensus 384 ll~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A 444 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQA 444 (484)
T ss_pred HHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHH
Confidence 99999999999999998764 4667889999999999999999888776654 4568999999
Q ss_pred HHHHHHHHHCCCCCChhh
Q 001637 945 RELLKEMQARGRNPNSST 962 (1039)
Q Consensus 945 ~~~~~~~~~~g~~p~~~~ 962 (1039)
+..+..+.+.. +++..+
T Consensus 445 ~~~l~~A~~~~-~~~~~~ 461 (484)
T COG4783 445 IIFLMRASQQV-KLGFPD 461 (484)
T ss_pred HHHHHHHHHhc-cCCcHH
Confidence 99999998863 555443
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=9.7e-05 Score=85.19 Aligned_cols=130 Identities=10% Similarity=0.101 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHH
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMD-TITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNIL 861 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 861 (1039)
+..++..|..+....|++++|+.+++...+. .|| ...+..++..+.+.+++++|+..+++.+. ..|+ ......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3444444444444445555555554444442 222 33344444444444445555554444444 3343 3333344
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 862 LGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 862 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
..++.+.|++++|..+|+++... .+-+...+..+...+.+.|+.++|...|+++++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444445555555555544431 111233444444444444555555555544444
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.37 E-value=5.8e-05 Score=87.51 Aligned_cols=222 Identities=11% Similarity=0.053 Sum_probs=142.2
Q ss_pred cCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHH-HHHhhccCChhHHHHHHHHHHHcCCCccHH
Q 001637 709 NGIMP-NSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKIL-LDTSSKSRRGDVILQMHERLVDMGVRLNQA 786 (1039)
Q Consensus 709 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 786 (1039)
.+..| +...|..|+..+...+++++|.++.+..++ ..|+...+..+ ...+.+.++.+.+..+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------- 87 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-------------- 87 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--------------
Confidence 34455 477899999999999999999999997764 45655433322 2234444443333222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIF 865 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 865 (1039)
.+++......++.-...+.+.+... .-+...+..++.+|.+.|+.++|.+.|+++++ +.| |..+.|.++..+
T Consensus 88 ---~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 88 ---NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSY 160 (906)
T ss_pred ---hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHH
Confidence 3444455555554444444445443 22445677778888888888888888888888 446 477888888888
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH------------------C-CCccChH
Q 001637 866 LGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT------------------K-GYVPKTS 926 (1039)
Q Consensus 866 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------~-~~~p~~~ 926 (1039)
+.. ++++|++++.+++.. +...+++.++.++++++.. . |+.--..
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHH
Confidence 887 888888888887652 2223344444444444444 1 1111233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHh
Q 001637 927 TYNVLIGDFAKEGKMHQARELLKEMQARGRNP-NSSTYDILIGGWC 971 (1039)
Q Consensus 927 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 971 (1039)
++.-+-..|....+|++++.+++.+++ +.| |..+..-++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 445555678888899999999999999 777 5556666666554
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.37 E-value=9.8e-05 Score=85.70 Aligned_cols=230 Identities=11% Similarity=0.073 Sum_probs=115.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 001637 680 LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPN-SVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLD 758 (1039)
Q Consensus 680 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 758 (1039)
...+..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++.+++..+ .+ +.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~ 91 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL---------------ID 91 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hh
Confidence 556666677776777777777776655553 333 22333333345555554444433 22 22
Q ss_pred HhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 001637 759 TSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINK 838 (1039)
Q Consensus 759 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 838 (1039)
......++.....++..+.+. ..+..++..|+.+|.+.|+.++|..+++++.+.. +.|+.+.|.+...|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 222233333333344444432 2233455556666666666666666666666553 33455666666666555 6666
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHH-----HHHcCCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 001637 839 ALATYTQMINEGVSPNTATYNILLG-----IFLGTGSTKEVDDLFGEMKK-RGLKPDASTYDTLISGHAKIGNKKESIQI 912 (1039)
Q Consensus 839 A~~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 912 (1039)
|++++.+.+..-+ +..-|+.+.. +-+..-+++.-..+.+.+.. .|..--..++--+...|.+.+++++++.+
T Consensus 168 A~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 168 AITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 6666666554200 0000000000 00111122222333333332 12222233444455667778888999999
Q ss_pred HHHHHHCCCcc-ChHHHHHHHHHHH
Q 001637 913 YCEMITKGYVP-KTSTYNVLIGDFA 936 (1039)
Q Consensus 913 ~~~~~~~~~~p-~~~~~~~l~~~~~ 936 (1039)
++.+++ ++| |.....-++..|.
T Consensus 246 LK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHh--cCCcchhhHHHHHHHHH
Confidence 999888 666 5556666666554
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.36 E-value=7.9e-05 Score=71.36 Aligned_cols=130 Identities=18% Similarity=0.110 Sum_probs=88.5
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHH
Q 001637 783 LNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNIL 861 (1039)
Q Consensus 783 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 861 (1039)
.|..+...++....+.|++.+|+..|++.... -++|...|+.+.-+|.+.|+.++|...|.+.++ +.|+ +..++.+
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNl 174 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNL 174 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhH
Confidence 35556666777777777777777777777765 455677777777777777777777777777777 5564 5666777
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001637 862 LGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEM 916 (1039)
Q Consensus 862 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 916 (1039)
...+.-.|+++.|..++......+ .-|..+-..+.-.....|++++|..+...-
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 777777777777777777776543 224444445555566777777777666543
No 131
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.33 E-value=7.8e-05 Score=72.23 Aligned_cols=119 Identities=8% Similarity=0.043 Sum_probs=78.1
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHH-HHhcCC--hHHH
Q 001637 414 AGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDG-CCKLGD--MSAA 490 (1039)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 490 (1039)
.++.+++...++..+...+. |...|..+...|...|++++|...|+...+.. +.+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455566666666655544 66677777777777777777777777766654 3455566666654 345555 4777
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 001637 491 ESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQ 535 (1039)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 535 (1039)
.+++++..+.++. +..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777776555 6667777777777777777777777777665
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=0.00022 Score=82.36 Aligned_cols=146 Identities=10% Similarity=0.098 Sum_probs=122.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 001637 816 IMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYD 894 (1039)
Q Consensus 816 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 894 (1039)
.+.++..+..|.....+.|.+++|..+++...+ +.|+ ......++.++.+.+++++|+..+++..... +-+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 455788899999999999999999999999999 8897 5677788999999999999999999999742 33455667
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 001637 895 TLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILI 967 (1039)
Q Consensus 895 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 967 (1039)
.+..++.+.|++++|+.+|++++. -.| +..++..+...+.+.|+.++|...|+++++. ..|..-.|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 788889999999999999999997 345 5788999999999999999999999999984 234444444433
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=2e-05 Score=71.91 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=93.2
Q ss_pred HHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 001637 841 ATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITK 919 (1039)
Q Consensus 841 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 919 (1039)
+.|++++. ..|+ ......++..+...|++++|.+.++.+.+.+ +.+...+..+...+.+.|++++|...+++.++
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~- 79 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA- 79 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 35566666 5664 4556677788889999999999999988743 34667777888889999999999999999887
Q ss_pred CCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 001637 920 GYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTY 963 (1039)
Q Consensus 920 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 963 (1039)
..| +...+..++..|...|++++|...+++.++ +.|+...+
T Consensus 80 -~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 80 -LDPDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred -cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchH
Confidence 455 678888889999999999999999999999 77876544
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=0.0018 Score=67.91 Aligned_cols=200 Identities=13% Similarity=0.048 Sum_probs=135.6
Q ss_pred hhhHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 001637 382 LAEAKMLFREMEKMG--VDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTF 459 (1039)
Q Consensus 382 ~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (1039)
+.++...-+.+...+ -.|+...+...+.+.........+..++.+..+. --...+-...-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 334444444443321 2345555555555444443333333333333321 12233333444566778999999999
Q ss_pred HHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 001637 460 NLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMP 539 (1039)
Q Consensus 460 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 539 (1039)
+.+++.- +-|...+....+.+.+.++..+|.+.++.+....+. ....+-.+.++|.+.|++.+|+.+++..... .+.
T Consensus 330 ~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~ 406 (484)
T COG4783 330 QPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPE 406 (484)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCC
Confidence 9887763 445556666778889999999999999999887443 3677788889999999999999999888776 456
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001637 540 NVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSR 605 (1039)
Q Consensus 540 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 605 (1039)
|...|..|..+|...|+..++.....+ .+.-.|++++|...+....+.
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 888999999999999988888776554 355678888888888777664
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00088 Score=64.21 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=108.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHH-
Q 001637 691 CKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVI- 769 (1039)
Q Consensus 691 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a- 769 (1039)
.-.|++..++..-...... +.+...-..+.++|...|.+.....-... +-.|....++.+......-++.+..
T Consensus 19 fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~----~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKE----GKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccccc----ccCChHHHHHHHHHHhhCcchhHHHH
Confidence 3346666666544433321 13444455566777777765543322221 2233333333333333333333222
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001637 770 LQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINE 849 (1039)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 849 (1039)
....+.+.......+......-...|...|++++|++....... -+....+. ..+.+..+.+-|....++|.+
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~- 165 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LEAAALNV--QILLKMHRFDLAEKELKKMQQ- 165 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHc-
Confidence 23344444433333333333334466677777777776665221 12222221 223344456666666666665
Q ss_pred CCCCChhHHHHHHHHHH----cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccCh
Q 001637 850 GVSPNTATYNILLGIFL----GTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKT 925 (1039)
Q Consensus 850 ~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 925 (1039)
+ .+..|++-|..+|. ..+++.+|.-+|+++.+. ..|+..+.+-..-++...|++++|..++++++.+. .-++
T Consensus 166 -i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp 241 (299)
T KOG3081|consen 166 -I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP 241 (299)
T ss_pred -c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH
Confidence 2 22334444444443 233455666666666542 34555555544445555566666666666665531 1244
Q ss_pred HHHHHHHHHHHhcC
Q 001637 926 STYNVLIGDFAKEG 939 (1039)
Q Consensus 926 ~~~~~l~~~~~~~g 939 (1039)
.+...++-.-...|
T Consensus 242 etL~Nliv~a~~~G 255 (299)
T KOG3081|consen 242 ETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHHHHHhC
Confidence 44444443333333
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0014 Score=62.32 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH-hHHHHHHHhhccCChh
Q 001637 694 GNLEIAFKLWDEMRR---NG-IMPNSV-TCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTST-TIKILLDTSSKSRRGD 767 (1039)
Q Consensus 694 g~~~~A~~~~~~m~~---~~-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~ 767 (1039)
.+.++..+++.++.. .| ..++.. .|..+.-+....|+.+-|...++++... + |.+. ....-.-.+...|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 455555666665553 22 333322 2223333444555666666666665442 2 3222 1111111223344555
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001637 768 VILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMI 847 (1039)
Q Consensus 768 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 847 (1039)
+|.++++.+++.+ +.|..++-.-+.+....|+.-+|++.+....+. +.-|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 5555555555432 224445555555555566666666666655554 34466666666666666666666666666665
Q ss_pred HCCCCCC-hhHHHHHHHHHHcCCC---hHHHHHHHHHHHh
Q 001637 848 NEGVSPN-TATYNILLGIFLGTGS---TKEVDDLFGEMKK 883 (1039)
Q Consensus 848 ~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 883 (1039)
- +.|- +..+..+.+.+.-.|- ++-|.+.|.+.++
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5 4452 3333344443333222 3334444444443
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0013 Score=63.18 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001637 486 DMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGK 556 (1039)
Q Consensus 486 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 556 (1039)
.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..+++..+... ..+..+...++..-...|.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 344444444444442 22344444444444444455555555554444432 1233444444433333333
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00023 Score=69.71 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=90.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCH
Q 001637 829 GYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPD-ASTYDTLISGHAKIGNK 906 (1039)
Q Consensus 829 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 906 (1039)
-..+.++|++|+..|.+.++ +.|. .+.|..-..+|++.|.++.|++-.+..+. +.|. ...|..|+-+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 45678899999999999998 7785 66666678899999999999999988887 3443 46788899999999999
Q ss_pred HHHHHHHHHHHHCCCccChHHH-HHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCh
Q 001637 907 KESIQIYCEMITKGYVPKTSTY-NVLIGDFAKEGKMH---QARELLKEMQARGRNPNS 960 (1039)
Q Consensus 907 ~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~---~A~~~~~~~~~~g~~p~~ 960 (1039)
++|++.|++.++ ++|+..+| +.|-.+=.+.+... .+...++.....|..||.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 999999999998 88965544 34433333333322 334444444444444554
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=7.6e-06 Score=53.61 Aligned_cols=35 Identities=43% Similarity=0.883 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 001637 241 IGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDI 275 (1039)
Q Consensus 241 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 275 (1039)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999874
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.99 E-value=0.00022 Score=65.04 Aligned_cols=94 Identities=12% Similarity=0.112 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIF 865 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 865 (1039)
....++..+...|++++|...|+.+...+ +.+...|..+...+...|++++|...|++.++ ..| +..++..+..++
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 34444555555555555555555554432 22344455555555555555555555555444 223 233444444444
Q ss_pred HcCCChHHHHHHHHHHHh
Q 001637 866 LGTGSTKEVDDLFGEMKK 883 (1039)
Q Consensus 866 ~~~g~~~~A~~~~~~~~~ 883 (1039)
...|++++|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 445555555555544444
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00026 Score=65.11 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=66.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCH
Q 001637 833 SSHINKALATYTQMINEGVSPN----TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDA--STYDTLISGHAKIGNK 906 (1039)
Q Consensus 833 ~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~ 906 (1039)
.++...+.+.++++... .|+ ......+...+...|++++|...|+.+.+....|.. .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 55666666666666653 222 233334456666677777777777777664322221 1223455566677777
Q ss_pred HHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001637 907 KESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEM 951 (1039)
Q Consensus 907 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 951 (1039)
++|+..++.... -...+..+..++..|.+.|++++|+..|+++
T Consensus 102 d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777755332 1124455666667777777777777777654
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.97 E-value=0.00036 Score=62.30 Aligned_cols=97 Identities=10% Similarity=-0.086 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHH
Q 001637 855 TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIG 933 (1039)
Q Consensus 855 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 933 (1039)
......+...+...|++++|.++|+-+.... +-+...|-.|+.++...|++++|+..|..+.. +.| |+..+..++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHH
Confidence 4555667777889999999999999988743 23455667888889999999999999999998 667 7888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 001637 934 DFAKEGKMHQARELLKEMQAR 954 (1039)
Q Consensus 934 ~~~~~g~~~~A~~~~~~~~~~ 954 (1039)
+|...|+.+.|++.|+.++..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998873
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00032 Score=64.52 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMD---TITYNALMRGYWVSSHINKALATYTQMINEGVSPN--TATYNIL 861 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l 861 (1039)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|.+.|++.+.....|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 444455444 4788888888888888763 223 23334455678888999999999999988653333 2345557
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001637 862 LGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEM 916 (1039)
Q Consensus 862 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 916 (1039)
..++...|++++|+..++..... ......+...++++.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78889999999999999775432 234456678899999999999999999875
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0059 Score=62.45 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=35.0
Q ss_pred cCCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccC-hHHHHHHHHHHHhcCCHH
Q 001637 867 GTGSTKEVDDLFGEMKK---RGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPK-TSTYNVLIGDFAKEGKMH 942 (1039)
Q Consensus 867 ~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 942 (1039)
+.|.+.+|.+.|.+.+. ...+|+...|........+.|+..+|+.--++.++ +.|. ...|-.-..++...++|+
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444442 12223333343333344455555555555444443 2221 111111123344445555
Q ss_pred HHHHHHHHHHH
Q 001637 943 QARELLKEMQA 953 (1039)
Q Consensus 943 ~A~~~~~~~~~ 953 (1039)
+|.+-+++..+
T Consensus 339 ~AV~d~~~a~q 349 (486)
T KOG0550|consen 339 EAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHh
Confidence 55555555544
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00012 Score=71.68 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=86.6
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCH
Q 001637 863 GIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKM 941 (1039)
Q Consensus 863 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 941 (1039)
.-..+.+++++|+..|.++++.. +-|.+.|..-..+|++.|.++.|++-.+..+. +.| -+.+|..|+.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 44677899999999999999842 34567777788899999999999999999998 888 467999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHH
Q 001637 942 HQARELLKEMQARGRNPNSSTYDILIG 968 (1039)
Q Consensus 942 ~~A~~~~~~~~~~g~~p~~~~~~~l~~ 968 (1039)
++|++.|++.++ +.|+..+|..=+.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 999999999999 9998766654443
No 146
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.00095 Score=74.74 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcC--------CChHHHHHHHHHH
Q 001637 816 IMMDTITYNALMRGYWVS-----SHINKALATYTQMINEGVSPN-TATYNILLGIFLGT--------GSTKEVDDLFGEM 881 (1039)
Q Consensus 816 ~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 881 (1039)
.+.+...|...+++.... ++.++|+++|++.++ ..|+ ...|..+..++... +++..+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 456778888887774332 237789999999998 7887 44555444333221 1234444455544
Q ss_pred HhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 882 KKR-GLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 882 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
... ....+...|..+.-.....|++++|...+++++. +.|+...|..++..|...|+.++|.+.++++.+ +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 432 1333556777666666678999999999999999 678888999999999999999999999999999 88976
Q ss_pred hhH
Q 001637 961 STY 963 (1039)
Q Consensus 961 ~~~ 963 (1039)
.||
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 665
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.79 E-value=3.8e-05 Score=50.18 Aligned_cols=33 Identities=48% Similarity=0.771 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 333 THTTLISAYCKQQALEEALGLYEEMVKYGFLPD 365 (1039)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 365 (1039)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455566666666666666666666655555554
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.032 Score=57.41 Aligned_cols=289 Identities=13% Similarity=0.017 Sum_probs=154.2
Q ss_pred HHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCH
Q 001637 213 KGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIV-SYNTLISGFCKRGDF 291 (1039)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~li~~~~~~g~~ 291 (1039)
..+.+...+.+|...+..+++..| .++..|..-...|...|++++|+--...-++. .|... ...-.-.++...++.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 344455566666666666666543 34556777777777777777777655554442 22211 333444555555555
Q ss_pred HHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 001637 292 VKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLI-SAYCKQQALEEALGLYEEMVKYGFLPDVVTYS 370 (1039)
Q Consensus 292 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 370 (1039)
.+|.+.++.-.. . .....+......-....-+|...+|-.+- ..+.-.|++++|.+.--..++.... +.....
T Consensus 134 i~A~~~~~~~~~---~--~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~ 207 (486)
T KOG0550|consen 134 IEAEEKLKSKQA---Y--KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALY 207 (486)
T ss_pred HHHHHHhhhhhh---h--HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHH
Confidence 555555542110 0 00000000111111111225555555553 3455778888888887777765311 222222
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 001637 371 SIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAG 450 (1039)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 450 (1039)
.-..++.-.++.+.|...|.+.++.+ ||...-.++- .-.+.++.+...| +-..+.|
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~----------~~~k~le~~k~~g------------N~~fk~G 263 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSAS----------MMPKKLEVKKERG------------NDAFKNG 263 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccC--hhhhhHHhHh----------hhHHHHHHHHhhh------------hhHhhcc
Confidence 22223445678888888888887753 4433222211 1112223333332 3346777
Q ss_pred ChhHHHHHHHHHHHCC---CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHH
Q 001637 451 RPSEAEDTFNLILKHN---LVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAAN 527 (1039)
Q Consensus 451 ~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 527 (1039)
++..|.+.|.+.+..+ ..++...|........+.|+..+|+.-.++..+.... -+..+..-..++...++|++|.+
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776542 3455556666667777788888888877777764211 11122222334445677788887
Q ss_pred HHHHHHhC
Q 001637 528 VMRKMKSQ 535 (1039)
Q Consensus 528 ~~~~~~~~ 535 (1039)
-+++..+.
T Consensus 343 d~~~a~q~ 350 (486)
T KOG0550|consen 343 DYEKAMQL 350 (486)
T ss_pred HHHHHHhh
Confidence 77776654
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=3.7e-05 Score=49.80 Aligned_cols=33 Identities=36% Similarity=0.674 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 001637 241 IGFNILIDGYCKSGDLSSALKLMEGMRREGVIP 273 (1039)
Q Consensus 241 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 273 (1039)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999988877
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.00075 Score=60.32 Aligned_cols=97 Identities=7% Similarity=-0.036 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHH
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILL 862 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 862 (1039)
+......+...+...|++++|.++|+-..... +-+..-|..|...+-..|++++|+..|..... +.|| +..+-.+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHH
Confidence 44455667777888999999999999887753 23567788888888888999999999999888 5564 77888888
Q ss_pred HHHHcCCChHHHHHHHHHHHh
Q 001637 863 GIFLGTGSTKEVDDLFGEMKK 883 (1039)
Q Consensus 863 ~~~~~~g~~~~A~~~~~~~~~ 883 (1039)
.++...|+.+.|.+.|+.++.
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888899999999999888875
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.73 E-value=0.0037 Score=64.98 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=84.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--hhHHHHHH
Q 001637 790 SLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVS-SHINKALATYTQMINE----GVSPN--TATYNILL 862 (1039)
Q Consensus 790 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~ 862 (1039)
..+.+|...|++..|-+++.++-+ .|... |++++|++.|++..+. + .+. ...+..++
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 344567777777777776666543 55566 7888888888887642 2 222 44556677
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc----C--hHHHHH
Q 001637 863 GIFLGTGSTKEVDDLFGEMKKRGLK-----PDAS-TYDTLISGHAKIGNKKESIQIYCEMITKGYVP----K--TSTYNV 930 (1039)
Q Consensus 863 ~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~--~~~~~~ 930 (1039)
..+...|++++|.++|+++...... .+.. .+-..+-++...|+...|.+.+++... ..| + ......
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS--QDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT--TSTTSTTSHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHH
Confidence 8888899999999999988763222 1121 222233355567889899999988875 333 1 234555
Q ss_pred HHHHHHhc--CCHHHHHHHHHHH
Q 001637 931 LIGDFAKE--GKMHQARELLKEM 951 (1039)
Q Consensus 931 l~~~~~~~--g~~~~A~~~~~~~ 951 (1039)
|+.+|-.. ..+++|..-|+.+
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHccc
Confidence 66666432 2344444444443
No 152
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.73 E-value=0.0065 Score=54.81 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=83.7
Q ss_pred CCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc---ChHH
Q 001637 851 VSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP---KTST 927 (1039)
Q Consensus 851 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~ 927 (1039)
+.|+...-..|..++.+.|+..||...|++...--+.-|....-.+..+....+++.+|...++++-+ ..| .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e--~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME--YNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh--cCCccCCCCc
Confidence 56777667778888889999999999999888644555666777777888888899999999988877 334 3445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 001637 928 YNVLIGDFAKEGKMHQARELLKEMQARGRNPNSST 962 (1039)
Q Consensus 928 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 962 (1039)
.-.+...|...|++++|+.-|+.+.. ..|++..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~a 195 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQA 195 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHH
Confidence 55667888888999999999999888 6776543
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.72 E-value=0.0049 Score=55.58 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=107.0
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---Chhh
Q 001637 886 LKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNP---NSST 962 (1039)
Q Consensus 886 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~ 962 (1039)
..|+...--.|..++.+.|+..||...|++.+.--+.-|....-.+.++....++...|...++++-+. .| .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCc
Confidence 567777777888999999999999999999987445558888888999999999999999999999884 34 2334
Q ss_pred HHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhCCCChHHHHHHHHHH
Q 001637 963 YDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSSTFARPGKKADAQRLLQEF 1033 (1039)
Q Consensus 963 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~l~~~G~~~eA~~~~~~~ 1033 (1039)
.-.+...+...|+ +++|+.-|+.+.. +-|+.+.....+..|.++|+.+||...+..+
T Consensus 163 ~Ll~aR~laa~g~------------~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGK------------YADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCC------------chhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4555667766655 5778889999886 4588888888889999999999998766543
No 154
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.72 E-value=0.0011 Score=70.59 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIF 865 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 865 (1039)
....|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|++++++.+. ..| +...+..-...|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 33445555666677777777777776652 33 333455566666666677777777665 234 344445555566
Q ss_pred HcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001637 866 LGTGSTKEVDDLFGEMKKRGLKP-DASTYDTLISGHAKIGNKKESIQIYCEMI 917 (1039)
Q Consensus 866 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 917 (1039)
...++++.|+++.+++.+. .| +..+|..|+.+|...|++++|+-.++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666666653 33 33466666666666666666666666654
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.66 E-value=0.0015 Score=62.15 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001637 822 TYNALMRGYWVSSHINKALATYTQMINEGVSPN--TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISG 899 (1039)
Q Consensus 822 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 899 (1039)
.+..++..+...|++++|+..|++.++....+. ...+..++.++.+.|++++|...++++.+.. +-+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555555666666666666554221111 2344455555555555555555555555421 1123333344444
Q ss_pred HhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 900 HAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 900 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
+...|+...+..-+++... .+++|.+.++++.+ ..|+.
T Consensus 116 ~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~--~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR--LAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh--hCchh
Confidence 5555554444433333221 25677788888777 56654
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.64 E-value=0.0014 Score=69.75 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=53.7
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHH
Q 001637 413 KAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAES 492 (1039)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (1039)
..++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++.+.++.. +.+......-...+.+.++++.|++
T Consensus 181 ~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 3344444444444444432 11 22223444444444444444444444332 2233444444455555555555555
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001637 493 ILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMK 533 (1039)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 533 (1039)
+.+++.+..+. +..+|..|..+|.+.|++++|+..++.+.
T Consensus 256 iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 256 IAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555554322 34455555555555555555555555443
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.038 Score=60.32 Aligned_cols=204 Identities=14% Similarity=0.128 Sum_probs=119.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 001637 329 PNLITHTTLISAYCKQQALEEALGLYEEMVKY-GFLP--------DVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDP 399 (1039)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 399 (1039)
|.+..|..+...-.+.-.++-|+..|-+.... |++. +...-.+=+.+ --|++++|.++|-+|.++++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh--
Confidence 56666777666655556666666666554332 2210 00011111222 24788889888888766422
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHH
Q 001637 400 NHVSYTTLIDSLFKAGCAMEAFALQSQMMVR-GVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLI 478 (1039)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 478 (1039)
.|..+.+.|++-...++++.--.. .-+.-..+|+.+...++....+++|.+.|..-.. -...+
T Consensus 766 -------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 766 -------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred -------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 356667777777666665431100 0001134677788888877788888877754432 12345
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001637 479 DGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQE 558 (1039)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 558 (1039)
.++.+..++++-+.+.+.+.+ |....-.+.+++.+.|.-++|.+.|-+-. . | ...+..|...++|.
T Consensus 830 ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHHH
Confidence 556665566655555544433 55667778888888888888887764432 1 2 23456677778888
Q ss_pred HHHHHHHH
Q 001637 559 VAFDLYND 566 (1039)
Q Consensus 559 ~a~~~~~~ 566 (1039)
+|.++-+.
T Consensus 896 ~avelaq~ 903 (1189)
T KOG2041|consen 896 EAVELAQR 903 (1189)
T ss_pred HHHHHHHh
Confidence 88777554
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=5.3e-05 Score=47.79 Aligned_cols=31 Identities=42% Similarity=0.941 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001637 241 IGFNILIDGYCKSGDLSSALKLMEGMRREGV 271 (1039)
Q Consensus 241 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 271 (1039)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.001 Score=58.97 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccC----hHHHHH
Q 001637 857 TYNILLGIFLGTGSTKEVDDLFGEMKKRGL--KPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPK----TSTYNV 930 (1039)
Q Consensus 857 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 930 (1039)
++..++..+...|++++|.+.+.++.+... ......+..++.++.+.|++++|.+.|++++.. .|+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 344455556666666666666666664211 111234445666677777777777777777652 232 345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 931 LIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 931 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
++.++.+.|++++|...++++++ ..|+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~--~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK--RYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH--HCcC
Confidence 66777777777777777777777 4454
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.001 Score=71.47 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=40.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 001637 829 GYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKK 907 (1039)
Q Consensus 829 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 907 (1039)
.+...|++++|+++|+++++ ..|+ ...|..+..++...|++++|+..++++++.. +.+...|..++.+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 33444555555555555554 3342 3344444444555555555555555554421 112333444444444455555
Q ss_pred HHHHHHHHHHH
Q 001637 908 ESIQIYCEMIT 918 (1039)
Q Consensus 908 ~A~~~~~~~~~ 918 (1039)
+|+..|+++++
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 161
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.60 E-value=0.00011 Score=47.50 Aligned_cols=32 Identities=34% Similarity=0.497 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001637 333 THTTLISAYCKQQALEEALGLYEEMVKYGFLP 364 (1039)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 364 (1039)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.60 E-value=0.00078 Score=56.85 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHH
Q 001637 858 YNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFA 936 (1039)
Q Consensus 858 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 936 (1039)
+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++... ..| +..++..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHH
Confidence 3344555556666666666666665531 22234455566666666777777777777666 233 4456666677777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001637 937 KEGKMHQARELLKEMQA 953 (1039)
Q Consensus 937 ~~g~~~~A~~~~~~~~~ 953 (1039)
..|++++|...+++..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 77777777777777665
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.032 Score=58.05 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHh-HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 001637 335 TTLISAYCKQQALEEALGLYEEMVKYGFLP-----DVV-TYSSIMGGLCKCGRLAEAKMLFREMEK 394 (1039)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 394 (1039)
..+...+.+.|++++|.++|+++....... ++. .+...+-++...|+...|...|++...
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444555555555555555554432211 111 112222244445566666666665543
No 164
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.59 E-value=0.14 Score=53.67 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=82.0
Q ss_pred HHhcCC-hHHHHHHHHHHHHCCCCC-ChhHHHHHH----HHHHc---CCChHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 001637 830 YWVSSH-INKALATYTQMINEGVSP-NTATYNILL----GIFLG---TGSTKEVDDLFGEMKKRGLKPD----ASTYDTL 896 (1039)
Q Consensus 830 ~~~~~~-~~~A~~~~~~~~~~~~~p-~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 896 (1039)
+.+.|. -++|+.+++..++ ..| |...-+.+. .+|.. ...+.+-..+-+-+.+.|++|- ....+.|
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 555666 7788888888887 455 333333222 12211 1123333333344445677763 3456677
Q ss_pred HHH--HhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 001637 897 ISG--HAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDIL 966 (1039)
Q Consensus 897 ~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 966 (1039)
.++ +...|++.++.-.-.=+.+ +.|++.+|..++-++....++++|.+++.+ ++|+..+++.-
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSK 531 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHH
Confidence 666 6688999988754444444 889999999999888899999999998875 57776655443
No 165
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.59 E-value=0.0024 Score=64.83 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHH----hCCCC-CCHH
Q 001637 822 TYNALMRGYWVSSHINKALATYTQMI----NEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMK----KRGLK-PDAS 891 (1039)
Q Consensus 822 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~ 891 (1039)
.|..|...|.-.|++++|+...+.=+ +.|-+.. ...+..+..++.-.|.++.|.+.|+... +.|-. ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666667778888887665432 2233332 4566777888888888888888777654 22211 1223
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCC--C---ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001637 892 TYDTLISGHAKIGNKKESIQIYCEMITKG--Y---VPKTSTYNVLIGDFAKEGKMHQARELLKEMQAR 954 (1039)
Q Consensus 892 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 954 (1039)
..-+|...|.-..+++.|+.++.+=++.. + .-....+.+|+.+|...|..++|+...++-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44467777777777888888877644310 1 113346777888888888888888888777664
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0035 Score=59.66 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHH
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMD--TITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNI 860 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ 860 (1039)
....+..++..|...|++++|...|++..+....+. ...|..++..+...|++++|+..|++.++ ..|+ ...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 344678888899999999999999999986533222 46788889999999999999999999998 5674 666777
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 861 LLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 861 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
+..++...|+...+..-+.++.. .+++|.+.+++++.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~ 148 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 77888888887666554444321 25677777777766
No 167
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.57 E-value=0.15 Score=53.46 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHH-------HHHHHhh----ccCChhHHHHHHHHHHHcCCCc
Q 001637 715 SVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIK-------ILLDTSS----KSRRGDVILQMHERLVDMGVRL 783 (1039)
Q Consensus 715 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~ 783 (1039)
..++..++...++.++..+|..++.-+.. +.|+...-. .+-+..+ ..-+...-..+++..-..++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 34566677777777887777777766652 334322111 1111111 1122333445555554443332
Q ss_pred cHHHH--HHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhc---CChHHHHHHHHHHHHCCCCC
Q 001637 784 NQAYY--NSLITILCRLGM-TRKATSVLEDMRGRGIMMDTITYNALM----RGYWVS---SHINKALATYTQMINEGVSP 853 (1039)
Q Consensus 784 ~~~~~--~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---~~~~~A~~~~~~~~~~~~~p 853 (1039)
..-+. ..-+.-+.+.|. -+.|+.+++.+..- -+-|..+-|.+. ..|.+. ....+-+.+-+-+.+.|+.|
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 21111 122345667776 78899999988874 233554444433 223211 11333333333444568888
Q ss_pred ----ChhHHHHHHHH--HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHH
Q 001637 854 ----NTATYNILLGI--FLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTST 927 (1039)
Q Consensus 854 ----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 927 (1039)
+...-|.|.+| +...|++.++.-.-.-+.+ +.|+..+|..++-++....+++||..++.+ ++|+..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~ 527 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERM 527 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhh
Confidence 34555666654 4578999988654443333 789999999999999999999999999987 5778777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001637 928 YNVLIGDFAKEGKMHQARELLKEMQ 952 (1039)
Q Consensus 928 ~~~l~~~~~~~g~~~~A~~~~~~~~ 952 (1039)
+++ +.++|.-+.++-+
T Consensus 528 ~ds---------kvqKAl~lCqKh~ 543 (549)
T PF07079_consen 528 RDS---------KVQKALALCQKHL 543 (549)
T ss_pred HHH---------HHHHHHHHHHHhh
Confidence 765 3445555555443
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.56 E-value=0.00023 Score=55.53 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCC
Q 001637 889 DASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEG-KMHQARELLKEMQARGRNP 958 (1039)
Q Consensus 889 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p 958 (1039)
+...|..++..+...|++++|+..|+++++ +.| ++..|..++.+|...| ++++|++.+++.++ +.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK--LDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH--HST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH--cCc
Confidence 456777888888899999999999999988 667 6678888999999998 79999999999888 555
No 169
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.54 E-value=0.0018 Score=57.32 Aligned_cols=94 Identities=13% Similarity=0.175 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCC-CHHHHHHH
Q 001637 823 YNALMRGYWVSSHINKALATYTQMINEGVSPN----TATYNILLGIFLGTGSTKEVDDLFGEMKKRG-LKP-DASTYDTL 896 (1039)
Q Consensus 823 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l 896 (1039)
+..++..+...|++++|.+.|++++.. .|+ ...+..++.++...|++++|.+.++.+.... -.+ ....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344444555556666666666665542 222 2344445566666666666666666665421 111 13344555
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 001637 897 ISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 897 ~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
+.++.+.|+.++|.+.++++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 5566666666666666666665
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.53 E-value=0.14 Score=52.34 Aligned_cols=298 Identities=16% Similarity=0.121 Sum_probs=162.5
Q ss_pred HHHHHHHHH--hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHCCCcccHHHHH----
Q 001637 404 YTTLIDSLF--KAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLF--KAGRPSEAEDTFNLILKHNLVSNHVTYS---- 475 (1039)
Q Consensus 404 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~---- 475 (1039)
|..|-.++. ..|+-..|.++-.+..+. +..|......++.+-. -.|+++.|.+-|+.|... ..+-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHH
Confidence 444444443 335555555554443321 2224444444444332 346666666666666542 22221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHH
Q 001637 476 SLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQN-IMPNVF--IFAALIDGYF 552 (1039)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~li~~~~ 552 (1039)
.|.-.--+.|+.+.|.+.-+..-..-+. -...+.+.+...|..|+++.|+++.+.-.+.. +.++.. .-..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 1111223456666666666655544322 34556666666666666666666665544332 122211 1111111100
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhh-HHHHHHHHHhcCCHHHHH
Q 001637 553 KAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVN-YTSLMDGFFKVGKETAAL 631 (1039)
Q Consensus 553 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~ 631 (1039)
.. .-..+...|...-.+..+ +.||... -..-..++++.|+..++-
T Consensus 238 --------~s------------------------~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 238 --------MS------------------------LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred --------HH------------------------HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 00 001123344444444444 5566542 233456888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCch--HHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 632 NIAQEMTEKNIPFDVTAYNVLINGLLRHGKC--EVQSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRR 708 (1039)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 708 (1039)
.+++.+-+.. |.+..+... .+++.|+. .-.+-.+.+... +|| ..+...+..+-...|++..|..--+....
T Consensus 284 ~ilE~aWK~e--PHP~ia~lY--~~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAE--PHPDIALLY--VRARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcC--CChHHHHHH--HHhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9999998874 444444333 34566665 333444444443 555 66777777888888999888877666655
Q ss_pred cCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCh
Q 001637 709 NGIMPNSVTCNVLVGGLVG-FGEIEKAMDVLNDMLVWGFSPTS 750 (1039)
Q Consensus 709 ~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 750 (1039)
..|....|..|.+.-.. .|+-.++...+-+.++..-.|+-
T Consensus 358 --~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 358 --EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred --hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 36777778777776554 48888888888888876666643
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.49 E-value=0.00025 Score=57.90 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=38.6
Q ss_pred CCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHH
Q 001637 868 TGSTKEVDDLFGEMKKRGL-KPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQAR 945 (1039)
Q Consensus 868 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 945 (1039)
.|++++|+.+++++.+... .++...+-.+..+|.+.|++++|++++++ .+ ..| +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3455555555555554211 11233333455556666666666666655 22 233 2233334455566666666666
Q ss_pred HHHHH
Q 001637 946 ELLKE 950 (1039)
Q Consensus 946 ~~~~~ 950 (1039)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00015 Score=45.64 Aligned_cols=29 Identities=48% Similarity=0.800 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001637 333 THTTLISAYCKQQALEEALGLYEEMVKYG 361 (1039)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g 361 (1039)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00041 Score=53.22 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=48.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 896 LISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 896 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
++..+.+.|++++|++.|+++++ ..| +...|..++.++...|++++|+..|+++++ ..|+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 34567788899999999999887 446 667888888888899999999999999888 67764
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.41 E-value=0.003 Score=67.91 Aligned_cols=92 Identities=8% Similarity=-0.042 Sum_probs=77.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcC
Q 001637 790 SLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGT 868 (1039)
Q Consensus 790 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 868 (1039)
..+..+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++ +.|+ ...|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 34566778899999999999998863 34677888888999999999999999999998 6674 67788888899999
Q ss_pred CChHHHHHHHHHHHhC
Q 001637 869 GSTKEVDDLFGEMKKR 884 (1039)
Q Consensus 869 g~~~~A~~~~~~~~~~ 884 (1039)
|++++|...|+++++.
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999873
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.40 E-value=0.0022 Score=54.02 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHc
Q 001637 789 NSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLG 867 (1039)
Q Consensus 789 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 867 (1039)
..++..+...|++++|...++++.+.. +.+...+..+...+...+++++|++.|++... ..|. ..++..+..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHH
Confidence 344455555556666666655555431 22334444555555555555555555555554 2222 2344444444445
Q ss_pred CCChHHHHHHHHHHH
Q 001637 868 TGSTKEVDDLFGEMK 882 (1039)
Q Consensus 868 ~g~~~~A~~~~~~~~ 882 (1039)
.|++++|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555555555544443
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.005 Score=53.24 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=60.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC---H-HHHHHHHHH
Q 001637 826 LMRGYWVSSHINKALATYTQMINEGVSPN--TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPD---A-STYDTLISG 899 (1039)
Q Consensus 826 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~-~~~~~l~~~ 899 (1039)
+..++-..|+.++|+.+|++.+..|+... ...+..+.+.+...|++++|..++++..... |+ . .....+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44566677778888888888777766654 4456667777888888888888888777521 22 1 112223345
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 001637 900 HAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 900 ~~~~g~~~~A~~~~~~~~~ 918 (1039)
+...|+.++|++.+-..+.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6677888888887766654
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.39 E-value=0.00022 Score=58.21 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=41.9
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 001637 833 SSHINKALATYTQMINEGV-SPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQ 911 (1039)
Q Consensus 833 ~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 911 (1039)
.|++++|+.+|+++++... .|+...+..++.++.+.|++++|.+++++ .+.+. .+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666665211 11333444456666666666666666666 22111 112223344556666667777666
Q ss_pred HHHH
Q 001637 912 IYCE 915 (1039)
Q Consensus 912 ~~~~ 915 (1039)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.38 E-value=0.0029 Score=64.25 Aligned_cols=285 Identities=15% Similarity=0.078 Sum_probs=137.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHhcCChhhHHHHHHHHH--hC--CCC-CCHHHHHHHHH
Q 001637 339 SAYCKQQALEEALGLYEEMVKYGFLPDVV----TYSSIMGGLCKCGRLAEAKMLFREME--KM--GVD-PNHVSYTTLID 409 (1039)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~--~~--g~~-~~~~~~~~li~ 409 (1039)
.-+|+.|+......+|+..++-|.. |.. .|..|.++|.-.+++++|++.+..=+ .+ |-+ -...+...|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3477888888888888888887754 433 35566667777778888877653211 10 000 01112223333
Q ss_pred HHHhcCCHhHHHHHHHHHH----HcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhc
Q 001637 410 SLFKAGCAMEAFALQSQMM----VRGV-AFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKL 484 (1039)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~----~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 484 (1039)
.+--.|.+++|+..-.+-+ +.|- .....++-.+...|...|+--.... -.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------
Confidence 3334455555443322211 1110 0012223333333333332100000 000010111110
Q ss_pred CChHHHHHHHHHHH----hCCC-CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhc
Q 001637 485 GDMSAAESILQEME----EKHV-VPNVITYSSIINGYVKKGMLDEAANVMRKMK----SQNIM-PNVFIFAALIDGYFKA 554 (1039)
Q Consensus 485 g~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~ 554 (1039)
..++.|.+.|.+=+ +.|- -.....|..|.+.|.-.|+++.|+...+.-+ +-|-+ .....+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 01233333333211 1110 0123356666777777788888887665432 22211 1234667777888888
Q ss_pred CCHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCHhhHHHHHHHHHhc
Q 001637 555 GKQEVAFDLYNDLKLVGM-----EENNYILDIFVNYLKRHGKMKEANGLVVDMMSR-----GLVPDRVNYTSLMDGFFKV 624 (1039)
Q Consensus 555 g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 624 (1039)
|+++.|.+.|+......+ .........+.+.|.-...++.|+.++.+-+.- ...-....+-+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 888888888876543211 122334445555555556666666665543320 0112234566667777777
Q ss_pred CCHHHHHHHHHHHHH
Q 001637 625 GKETAALNIAQEMTE 639 (1039)
Q Consensus 625 g~~~~A~~~~~~~~~ 639 (1039)
|..++|+.+.+...+
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777666655443
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.33 E-value=0.0045 Score=64.01 Aligned_cols=131 Identities=13% Similarity=0.007 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 001637 207 SCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCK-SGDLSSALKLMEGMRREGVIPDIVSYNTLISGF 285 (1039)
Q Consensus 207 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 285 (1039)
+|..+++..-+.+..+.|+.+|.++++.+. .+...|-.......+ .++.+.|..+|+...+. +..+...|...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455555555555556666666666654322 122233333333333 34444466666666654 333555566666666
Q ss_pred HccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 286 CKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEP-NLITHTTLISAYCKQQALEEALGLYEEMVK 359 (1039)
Q Consensus 286 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (1039)
.+.|+.+.|+.+|+..+..- .... ....|...+.--.+.|+++....+.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l--------------------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSL--------------------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTS--------------------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhc--------------------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665410 0011 123556666665566666666666555554
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.32 E-value=0.26 Score=50.55 Aligned_cols=288 Identities=12% Similarity=0.121 Sum_probs=171.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHhCCCCCChH--hHHHHHHHhhccCChhH
Q 001637 693 QGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGL--VGFGEIEKAMDVLNDMLVWGFSPTST--TIKILLDTSSKSRRGDV 768 (1039)
Q Consensus 693 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~ 768 (1039)
.|+-..|.+.-.+..+. +..|......++.+- .-.|+++.|.+-|+.|.. .|... -++-+.-.....|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 45555665555444321 223433444443332 235677777777777753 12211 22223333445677777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHH--HHHHHHHH---HhcCChHHHHHH
Q 001637 769 ILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGR-GIMMDTIT--YNALMRGY---WVSSHINKALAT 842 (1039)
Q Consensus 769 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~--~~~l~~~~---~~~~~~~~A~~~ 842 (1039)
++++-+..-..- +.-...+...+...+..|+|+.|+++.+.-... -+.+|..- --.|+.+- .-..+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 777777766542 223456777888899999999999999876543 23344321 12222221 122456777777
Q ss_pred HHHHHHCCCCCChhHH-HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH-HHHHHHHHHCC
Q 001637 843 YTQMINEGVSPNTATY-NILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKES-IQIYCEMITKG 920 (1039)
Q Consensus 843 ~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 920 (1039)
-.+..+ +.||.+.- ..-..++.+.|++.++-.+++.+-+. .|...++...+++ +.|+.-.. .+-.+++..
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~~a--r~gdta~dRlkRa~~L~s-- 323 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYVRA--RSGDTALDRLKRAKKLES-- 323 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHHHh--cCCCcHHHHHHHHHHHHh--
Confidence 666666 77874433 33457889999999999999999874 5666666555543 77774322 222333333
Q ss_pred CccC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHH
Q 001637 921 YVPK-TSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMN 999 (1039)
Q Consensus 921 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 999 (1039)
++|| ....-.+..+-...|++..|..-.+.+.+ ..|....|..|...=.- ..|+-.++...+.+..
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeA-----------etGDqg~vR~wlAqav 390 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEA-----------ETGDQGKVRQWLAQAV 390 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhh-----------ccCchHHHHHHHHHHh
Confidence 6674 45555566777788999999999988888 78987777655442111 1244456777777776
Q ss_pred hCCCCCC
Q 001637 1000 EKGFVPC 1006 (1039)
Q Consensus 1000 ~~~~~p~ 1006 (1039)
+..-.|+
T Consensus 391 ~APrdPa 397 (531)
T COG3898 391 KAPRDPA 397 (531)
T ss_pred cCCCCCc
Confidence 5433343
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0046 Score=58.65 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHH
Q 001637 855 TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKP--DASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVL 931 (1039)
Q Consensus 855 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 931 (1039)
...|..++..+...|++++|...+++++.....+ ...+|..+..++...|++++|++.+++++. +.| ...++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 3445555566666777777777777776532121 124566677777777888888888877776 445 34555566
Q ss_pred HHHHH-------hcCCHHHHHHHHHH
Q 001637 932 IGDFA-------KEGKMHQARELLKE 950 (1039)
Q Consensus 932 ~~~~~-------~~g~~~~A~~~~~~ 950 (1039)
+..|. ..|++++|+..+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 65555 67777755444444
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.011 Score=58.69 Aligned_cols=123 Identities=10% Similarity=0.120 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHH
Q 001637 838 KALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIG---NKKESIQIY 913 (1039)
Q Consensus 838 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~ 913 (1039)
+.+.-++.-+. -.| |...|..|..+|...|+.+.|...|..+.+. ..++...+..+..++..+. ...++..+|
T Consensus 140 ~l~a~Le~~L~--~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 140 ALIARLETHLQ--QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 33333444344 356 5889999999999999999999999999873 1344555555555543332 356899999
Q ss_pred HHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 001637 914 CEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILI 967 (1039)
Q Consensus 914 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 967 (1039)
+++++ .+| |......|...+...|++.+|...++.|++ .-|....+..++
T Consensus 217 ~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~i 267 (287)
T COG4235 217 RQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLI 267 (287)
T ss_pred HHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHH
Confidence 99998 677 667777788999999999999999999999 445434444443
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.00065 Score=52.74 Aligned_cols=62 Identities=24% Similarity=0.448 Sum_probs=45.6
Q ss_pred hccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 001637 901 AKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDIL 966 (1039)
Q Consensus 901 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 966 (1039)
.+.|++++|++.|++++. ..| +..++..++.+|.+.|++++|.++++++.. ..|+...+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 357888888888888887 456 667777788888888888888888888888 56765444333
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.0044 Score=58.81 Aligned_cols=80 Identities=15% Similarity=-0.054 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHH
Q 001637 785 QAYYNSLITILCRLGMTRKATSVLEDMRGRGIMM--DTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNIL 861 (1039)
Q Consensus 785 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 861 (1039)
...+..++..+...|++++|+..|++.......+ ...+|..+...+...|++++|+..|++.+. +.|+ ..++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 3456667777777788888888888776542221 134677777777777888888888877776 4453 4445555
Q ss_pred HHHHH
Q 001637 862 LGIFL 866 (1039)
Q Consensus 862 ~~~~~ 866 (1039)
..++.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55554
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.24 E-value=0.11 Score=52.39 Aligned_cols=62 Identities=8% Similarity=0.029 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 001637 683 YNIMISASCKQGNLEIAFKLWDEMRRNGIMPN--SVTCNVLVGGLVGFGEIEKAMDVLNDMLVW 744 (1039)
Q Consensus 683 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 744 (1039)
+......+...|++++|++.|+.+...-..+. ....-.++.++.+.+++++|...+++.++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33344455667888888888888776422211 112245566777788888888888877754
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.18 E-value=0.0097 Score=61.53 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001637 822 TYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLG-TGSTKEVDDLFGEMKKRGLKPDASTYDTLISGH 900 (1039)
Q Consensus 822 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 900 (1039)
+|..+++...+.+..+.|..+|.++.+.+ .-+...|...+..-.+ .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554311 1122333333333222 33344455555555542 233444555555555
Q ss_pred hccCCHHHHHHHHHHHHHCCCccCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 901 AKIGNKKESIQIYCEMITKGYVPKT---STYNVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 901 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
.+.|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+++.+.++.+++.+ ..|+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhh
Confidence 5556666666666665543 22221 3555555555555666666666666665 4444
No 187
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.18 E-value=0.006 Score=50.37 Aligned_cols=80 Identities=20% Similarity=0.420 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcC--------ChhhHHHHHHHHHhCCCCCCHHH
Q 001637 333 THTTLISAYCKQQALEEALGLYEEMVKYGF-LPDVVTYSSIMGGLCKCG--------RLAEAKMLFREMEKMGVDPNHVS 403 (1039)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~ 403 (1039)
|-...|.-+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566667777999999999999999998 889999998888877643 23344556666666666666666
Q ss_pred HHHHHHHHH
Q 001637 404 YTTLIDSLF 412 (1039)
Q Consensus 404 ~~~li~~~~ 412 (1039)
|+.++..+.
T Consensus 107 Ynivl~~Ll 115 (120)
T PF08579_consen 107 YNIVLGSLL 115 (120)
T ss_pred HHHHHHHHH
Confidence 666655543
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.58 Score=51.69 Aligned_cols=153 Identities=12% Similarity=0.081 Sum_probs=82.6
Q ss_pred CchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHH
Q 001637 184 GLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRD----VIGFNILIDGYCKSGDLSSA 259 (1039)
Q Consensus 184 g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 259 (1039)
|.+++|.++|-+|-+.+ ..+..+.+.|++-...+++. ..|-..| ..+|+.+...+.....+++|
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777666664433 22344455555543333322 2221111 24577777777777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHH
Q 001637 260 LKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLIS 339 (1039)
Q Consensus 260 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 339 (1039)
.+.|..-.. . -..+.++.+..++++-..+...+. .|....-.+.+
T Consensus 816 ~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lp--------------------------e~s~llp~~a~ 860 (1189)
T KOG2041|consen 816 AKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLP--------------------------EDSELLPVMAD 860 (1189)
T ss_pred HHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcC--------------------------cccchHHHHHH
Confidence 777765421 1 134455555555555444433332 24445566777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 001637 340 AYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREM 392 (1039)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 392 (1039)
++.+.|.-++|.+.|-+- +. |. +.+..|...++|.+|.++-++.
T Consensus 861 mf~svGMC~qAV~a~Lr~---s~-pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 861 MFTSVGMCDQAVEAYLRR---SL-PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHhhchHHHHHHHHHhc---cC-cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 788888888877766432 21 11 2344566667777777765543
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.16 E-value=0.0039 Score=66.70 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=88.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 001637 330 NLITHTTLISAYCKQQALEEALGLYEEMVKY--GFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTL 407 (1039)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 407 (1039)
+.+....+++.+....+++++..++-+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4455666777777777788888888777764 22222445668888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 001637 408 IDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKA 449 (1039)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 449 (1039)
++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887776655666666555555554
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.15 E-value=0.058 Score=54.22 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 790 SLITILCRLGMTRKATSVLEDMRGRGIMMDTITY---NALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 790 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
..+..+...|++++|.+.|+++...... ++..- -.++.+|.+.+++++|+..|++.++
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444455566666666666666654211 12221 2344555666666666666666665
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.06 E-value=0.0086 Score=64.18 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 001637 818 MDTITYNALMRGYWVSSHINKALATYTQMINE--GVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDT 895 (1039)
Q Consensus 818 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 895 (1039)
.+.+....++..+....+.+++..++.+.... ...--..|..+++..|.+.|..++++.+++.=..+|+=||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555555555555555442 1111123334555566666666666666655555666666666666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHH
Q 001637 896 LISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNV 930 (1039)
Q Consensus 896 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 930 (1039)
|++.+.+.|++..|.+++..|...+.-.++.++..
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L 178 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQAL 178 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHH
Confidence 66666666666666665555554333334444433
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.05 E-value=0.03 Score=63.00 Aligned_cols=123 Identities=16% Similarity=0.098 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCC
Q 001637 801 TRKATSVLEDMRGRGIMMD-TITYNALMRGYWVS--------SHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGS 870 (1039)
Q Consensus 801 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 870 (1039)
...|..+|++..+. .|+ ...|..+..++... .+...+.+...+.......| +...|..+.-.....|+
T Consensus 358 ~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 45566666666654 333 23333333222111 12334444444443321122 35666666666666788
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHH
Q 001637 871 TKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYN 929 (1039)
Q Consensus 871 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 929 (1039)
+++|...++++++. .|+...|..++..+...|+.++|.+.++++.. +.|...+|.
T Consensus 436 ~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 436 TDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY 490 (517)
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence 88888888888874 46777788888888888888888888888877 667544443
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.01 E-value=0.019 Score=49.76 Aligned_cols=92 Identities=21% Similarity=0.184 Sum_probs=71.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccC----hHHHHHHHH
Q 001637 860 ILLGIFLGTGSTKEVDDLFGEMKKRGLKPDA--STYDTLISGHAKIGNKKESIQIYCEMITKGYVPK----TSTYNVLIG 933 (1039)
Q Consensus 860 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 933 (1039)
.+..++-..|+.++|+.+|++..+.|..... ..+-.+...+...|++++|+.++++.... .|+ ......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 3566778899999999999999998766543 34556778899999999999999999874 243 233333455
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 001637 934 DFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 934 ~~~~~g~~~~A~~~~~~~~~ 953 (1039)
++...|+.++|++.+-..+.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77888999999999887765
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.99 E-value=0.0024 Score=49.71 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCC-ChHHHHHHHHHHH
Q 001637 820 TITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTG-STKEVDDLFGEMK 882 (1039)
Q Consensus 820 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 882 (1039)
+..|..++..+...|++++|+..|++.++ +.|+ ...|..+..++...| ++++|++.+++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 33444444444444555555555555444 3343 344444444444444 3455555554444
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.98 E-value=0.0031 Score=48.26 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=32.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 791 LITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 791 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
++..+.+.|++++|++.|+++.+.. +-+...|..+...+...|++++|+..|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556666666666666666542 22455555566666666666666666666655
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.97 E-value=0.0035 Score=49.44 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=51.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 001637 898 SGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSST 962 (1039)
Q Consensus 898 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 962 (1039)
..|.+.+++++|.+.++.++. ..| ++..|...+..|...|++++|.+.+++.++ ..|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHH
Confidence 457788999999999999988 566 677888888999999999999999999998 6776543
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.96 E-value=0.011 Score=48.88 Aligned_cols=77 Identities=10% Similarity=0.199 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHhHHHHHHHHHHHcCCCCCHHHHH
Q 001637 370 SSIMGGLCKCGRLAEAKMLFREMEKMGV-DPNHVSYTTLIDSLFKAG--------CAMEAFALQSQMMVRGVAFDVVVYT 440 (1039)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~ 440 (1039)
...|.-+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++...+.+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555566777777777777777777 777777777777665542 1223344444444444444544554
Q ss_pred HHHHHH
Q 001637 441 TLMDGL 446 (1039)
Q Consensus 441 ~l~~~~ 446 (1039)
.++..+
T Consensus 109 ivl~~L 114 (120)
T PF08579_consen 109 IVLGSL 114 (120)
T ss_pred HHHHHH
Confidence 444443
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.41 Score=46.32 Aligned_cols=145 Identities=15% Similarity=0.132 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHH
Q 001637 824 NALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKR-----GLKPDASTYDTLIS 898 (1039)
Q Consensus 824 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~ 898 (1039)
+.++..+.-.|.+.-.+.++++.++...+-++.....|..+-...|+.+.|...|+...+. +..-..........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4455555566777888888888887543446777777888888888888888888876642 22222233333344
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 001637 899 GHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCE 972 (1039)
Q Consensus 899 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 972 (1039)
.+.-.+++.+|...+.+++. .+| |+..-|.-.-+..-.|+..+|++..+.|++ ..|.+.+.++++..++.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~--~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~nL~t 331 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILR--MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFNLTT 331 (366)
T ss_pred heecccchHHHHHHHhhccc--cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHHHHH
Confidence 56677889999999999987 445 555555544444557899999999999999 88988887777766553
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.92 E-value=0.073 Score=57.76 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 001637 261 KLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEV 301 (1039)
Q Consensus 261 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~ 301 (1039)
.-+++|.++|-.||.+. +...++-.|.+.+|-++|.+-
T Consensus 621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 33566777777777663 344566677777777777654
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.037 Score=55.17 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCC---ChHHHHHHHHHHHhCCCCC-CHH
Q 001637 817 MMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTG---STKEVDDLFGEMKKRGLKP-DAS 891 (1039)
Q Consensus 817 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~~ 891 (1039)
+-|...|..|...|...|+++.|...|.+..+ +.|+ ...+..+..++..+. ...++..++++++.. .| +..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 34667777777777777777777777777776 4443 555555555544322 256677777777763 33 333
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHH
Q 001637 892 TYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLI 932 (1039)
Q Consensus 892 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 932 (1039)
....|...+...|++.+|...++.|++ .-|....+..++
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~i 267 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHH
Confidence 344455556777788888888877777 334333344443
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.084 Score=50.80 Aligned_cols=232 Identities=11% Similarity=-0.022 Sum_probs=146.3
Q ss_pred chhHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCCCCCHhhHHHHHHHH-HhcCCh-hHHHH-HHHHHHhCCCCCChhhH
Q 001637 65 HLYAYFFCTLIQLYLTCGRFAKASDTFFTMRNFNIIPVLPLWNKLIYHF-NASGLV-SQVWI-VYTHMISCGVLPNVFTI 141 (1039)
Q Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~-~~a~~-~~~~~~~~g~~~~~~~~ 141 (1039)
+.+...|+.-+..+++...+++|..-+...-+.+- |+.. |..--..| .+.|.. +=+.+ ++..+++ ..| +-|
T Consensus 66 ~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~-pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~--~lg--npq 139 (366)
T KOG2796|consen 66 TDSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQ-PDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQ--YLG--NPQ 139 (366)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCC-ccee-eeeccccCCCCcCccccHHHHHHHHHHHH--hcC--CcH
Confidence 34445688888888999988888776665554432 2211 00000000 112221 22222 2333332 112 336
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC-CCCc--------ccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHH
Q 001637 142 NVLVHSFCKVGNLSFALDFLRNVDI-DVDN--------VTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILV 212 (1039)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~~~~-~~~~--------~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 212 (1039)
+.|++.+.-..-+++.+..++.... +... ..-++++..+...|.+.-....+.+.++...+.++.....|.
T Consensus 140 esLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lg 219 (366)
T KOG2796|consen 140 ESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLG 219 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHH
Confidence 6777666554444444444433211 1111 223456666677888888999999999987777888889999
Q ss_pred HHHHhcCchhhHHHHHHHHHhCCCCCCHHH-----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 001637 213 KGFCRIGMVKYGEWVMDNLVNGGVCRDVIG-----FNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCK 287 (1039)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 287 (1039)
+.-.+.|+.+.|...|+++.+..-..|-.. .-.....|.-..++.+|...|++.+..+.. |.+.-|+-.-++.-
T Consensus 220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllY 298 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLY 298 (366)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHH
Confidence 999999999999999998876433333333 334445677778999999999999886533 55555555555556
Q ss_pred cCCHHHHHHHHHHHHh
Q 001637 288 RGDFVKAKSLIDEVLG 303 (1039)
Q Consensus 288 ~g~~~~A~~~~~~~~~ 303 (1039)
.|+..+|++..+.|.+
T Consensus 299 lg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7899999999999987
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.82 E-value=0.25 Score=52.04 Aligned_cols=79 Identities=20% Similarity=0.144 Sum_probs=42.4
Q ss_pred HHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCChhH
Q 001637 790 SLITILCR---LGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWV---------SSHINKALATYTQMINEGVSPNTAT 857 (1039)
Q Consensus 790 ~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~p~~~~ 857 (1039)
..+.++.+ .|+.++|+.++..+......+++.+|..+++.|-. ....++|+..|.+.-+ +.|+..+
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~ 261 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYS 261 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccc
Confidence 34445555 67777777777775544455666666666655411 1125667777776665 4455433
Q ss_pred HHHHHHHHHcCCC
Q 001637 858 YNILLGIFLGTGS 870 (1039)
Q Consensus 858 ~~~l~~~~~~~g~ 870 (1039)
-..++..+...|.
T Consensus 262 GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 262 GINAATLLMLAGH 274 (374)
T ss_pred hHHHHHHHHHcCC
Confidence 3333333333343
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.80 E-value=0.22 Score=54.27 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHCCCCcCchhHHHHHHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001637 188 QGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMR 267 (1039)
Q Consensus 188 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (1039)
+.+.-++++.+.|-.|+... +...|+-.|.+.+|.++|. ++|.-..|+++|..|+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk----------------------~~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK----------------------RSGHENRALEMYTDLR 672 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH----------------------HcCchhhHHHHHHHHH
Confidence 34455667777787677643 4456677788888888775 4566666777776654
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.76 E-value=0.016 Score=58.55 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=55.3
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccC----hHHHHHHHHHHH
Q 001637 865 FLGTGSTKEVDDLFGEMKKRGLKPD----ASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPK----TSTYNVLIGDFA 936 (1039)
Q Consensus 865 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~ 936 (1039)
....|++++|...|+..++. .|+ ...+-.++..|...|++++|...|+++++. .|+ +..+..++..|.
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHH
Confidence 34456666666666666642 121 123345666677777777777777777752 232 344555566677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 937 KEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 937 ~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
..|++++|.+.++++++ ..|+.
T Consensus 229 ~~g~~~~A~~~~~~vi~--~yP~s 250 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIK--KYPGT 250 (263)
T ss_pred HcCCHHHHHHHHHHHHH--HCcCC
Confidence 77777888887777777 56654
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.76 E-value=0.029 Score=52.93 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=64.2
Q ss_pred CChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 001637 329 PNLITHTTLISAYCK-----QQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVS 403 (1039)
Q Consensus 329 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 403 (1039)
.|..+|..+++.|.+ .|.++=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+--+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h-------- 114 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH-------- 114 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc--------
Confidence 344555555555553 24555555555555556665566666665555433 2211 11111111100
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHH
Q 001637 404 YTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRP-SEAEDTFNLIL 463 (1039)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 463 (1039)
.-.+.+-|++++++|...|+-||..++..+++.+.+.+.. .+..++.-.|.
T Consensus 115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 0123456888999999999999999999999998766543 23334333333
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.73 E-value=0.022 Score=57.60 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=47.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCC-CHHHHHHHHHHHhccC
Q 001637 831 WVSSHINKALATYTQMINEGVSPN----TATYNILLGIFLGTGSTKEVDDLFGEMKK-RGLKP-DASTYDTLISGHAKIG 904 (1039)
Q Consensus 831 ~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g 904 (1039)
.+.|++++|+..|+++++ ..|+ ...+..++.++...|++++|...|+.+++ ....| ....+..++..+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 344556666666666555 2343 23455566666666666666666666654 11111 1233333455555667
Q ss_pred CHHHHHHHHHHHHH
Q 001637 905 NKKESIQIYCEMIT 918 (1039)
Q Consensus 905 ~~~~A~~~~~~~~~ 918 (1039)
+.++|.+.|+++++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777666
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.71 E-value=1 Score=47.30 Aligned_cols=92 Identities=10% Similarity=0.135 Sum_probs=64.1
Q ss_pred HHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 001637 457 DTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQN 536 (1039)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 536 (1039)
++-+++.+. +.|..+|-.||.-+...|.+++..+++++|..-- +--..+|...+.+-....++.....+|.+-+...
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444444443 5678888899999988899998889988887642 2245678777877777788888888888877654
Q ss_pred CCCCHHHHHHHHHHHHh
Q 001637 537 IMPNVFIFAALIDGYFK 553 (1039)
Q Consensus 537 ~~~~~~~~~~li~~~~~ 553 (1039)
. +...|..-++--.+
T Consensus 107 l--~ldLW~lYl~YIRr 121 (660)
T COG5107 107 L--NLDLWMLYLEYIRR 121 (660)
T ss_pred c--cHhHHHHHHHHHHh
Confidence 3 34455555543333
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.62 E-value=0.042 Score=51.85 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCHhHHHHHHHHHHh-----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHH
Q 001637 364 PDVVTYSSIMGGLCK-----CGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVV 438 (1039)
Q Consensus 364 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 438 (1039)
.|..+|..+++.|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+. -..+|+.+-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence 477788888888775 46777777888899999999999999999988754 2221 111222211
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCC
Q 001637 439 YTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGD 486 (1039)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 486 (1039)
.- .-.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 113 -----~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -----MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 123457789999999999999999999999999988765
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.62 E-value=0.071 Score=49.10 Aligned_cols=68 Identities=18% Similarity=0.410 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChh
Q 001637 892 TYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQAR-----GRNPNSS 961 (1039)
Q Consensus 892 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~ 961 (1039)
....++..+...|++++|..+.++++. ..| |...|..++.+|...|+..+|++.|+++.+. |+.|++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 445667778889999999999999998 677 7789999999999999999999999887553 7777764
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.56 E-value=0.35 Score=47.34 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 001637 682 TYNIMISASCKQGNLEIAFKLWDEMRRNGIMP--NSVTCNVLVGGLVGFGEIEKAMDVLNDMLV 743 (1039)
Q Consensus 682 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 743 (1039)
.+......+...|++++|++.|+.+...-... .....-.++.++.+.|++++|...++++++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555667788888888888887632111 144556667777788888888888887764
No 211
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.51 E-value=0.0077 Score=46.62 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=23.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 868 TGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 868 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
.|++++|+++|+++.+.. +-+...+..++.+|.+.|++++|.+++++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555554421 12333444455555555555555555555554
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=96.47 E-value=0.073 Score=48.14 Aligned_cols=100 Identities=10% Similarity=-0.007 Sum_probs=78.5
Q ss_pred CCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHH
Q 001637 851 VSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTY 928 (1039)
Q Consensus 851 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 928 (1039)
++++ .........-+...|++++|..+|.-+...+ .-+...|..|..++...|++++|+..|.-+.. +.+ |+..+
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~ 108 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPV 108 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCcc
Confidence 4443 3333445556778999999999999988643 22455667888889999999999999998876 334 66777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 929 NVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 929 ~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
...+.+|...|+.+.|+..|+....
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh
Confidence 7888999999999999999999987
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.40 E-value=0.39 Score=47.05 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=22.6
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001637 411 LFKAGCAMEAFALQSQMMVRGVA--FDVVVYTTLMDGLFKAGRPSEAEDTFNLILK 464 (1039)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (1039)
+...|++.+|...|+.+...-+. .-..+...++.++.+.|+++.|...++..++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455555555444443111 1122333444445555555555555555443
No 214
>PRK11906 transcriptional regulator; Provisional
Probab=96.38 E-value=0.26 Score=52.73 Aligned_cols=119 Identities=14% Similarity=0.138 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHH-CCCCCC-hhHHHHHHHHHHc---------CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 001637 836 INKALATYTQMIN-EGVSPN-TATYNILLGIFLG---------TGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIG 904 (1039)
Q Consensus 836 ~~~A~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 904 (1039)
.+.|+.+|.+.+. ..+.|+ ...|..+..++.. .....+|.++-+++++.+ +-|......++.++.-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 6788888998882 137776 4455555443321 233567777888888754 446666667777777788
Q ss_pred CHHHHHHHHHHHHHCCCccC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 905 NKKESIQIYCEMITKGYVPK-TSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 905 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
+++.|..+|+++.. +.|| +.+|...+....-.|+.++|.+.+++.++ +.|.
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPR 404 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCch
Confidence 89999999999988 7885 46777777777889999999999999988 7884
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.093 Score=54.47 Aligned_cols=139 Identities=13% Similarity=0.082 Sum_probs=92.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 001637 826 LMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGN 905 (1039)
Q Consensus 826 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 905 (1039)
-.+.|.+.|++..|...|++.+.. -.. ...-..++.... .. .-..++..+..++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~-~~-------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKA-EA-------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHH-HH-------HHHHHhhHHHHHHHhhhh
Confidence 356778888888888888887652 010 000011221111 11 123355667778889999
Q ss_pred HHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHh
Q 001637 906 KKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLI 984 (1039)
Q Consensus 906 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 984 (1039)
+.+|++.-++.+. .+| |.....--+.+|...|+++.|+..|+++++ +.|++-....-+..|.+. .
T Consensus 273 ~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k----------~ 338 (397)
T KOG0543|consen 273 YKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQK----------I 338 (397)
T ss_pred HHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHH----------H
Confidence 9999999999998 566 777888888999999999999999999999 899654444433333221 1
Q ss_pred HhHHHHHHHHHHHHH
Q 001637 985 LSYRAEAKKLFMEMN 999 (1039)
Q Consensus 985 ~~~~~~a~~~~~~~~ 999 (1039)
..+.+...++|..|-
T Consensus 339 ~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 339 REYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHh
Confidence 223455677777774
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.25 E-value=0.015 Score=46.55 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCc---cC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 891 STYDTLISGHAKIGNKKESIQIYCEMITK--GYV---PK-TSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 891 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
.+|..+...|...|++++|++.|+++++. .+. |+ ..+++.++..|...|++++|++++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666677777777666666542 011 11 34566677777777777777777777665
No 217
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=1.2 Score=42.90 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---hhHHHH
Q 001637 786 AYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINE--GVSPN---TATYNI 860 (1039)
Q Consensus 786 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~---~~~~~~ 860 (1039)
..++.-+.+|..+|..+.|-..+++.-+. ....++++|+++|++...- .-..+ ...+..
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 35556677888888888888887776532 2345677777777776542 01111 223334
Q ss_pred HHHHHHcCCChHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCC--Ccc-ChHHHHHHH
Q 001637 861 LLGIFLGTGSTKEVDDLFGEMKK----RGLKPDA-STYDTLISGHAKIGNKKESIQIYCEMITKG--YVP-KTSTYNVLI 932 (1039)
Q Consensus 861 l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l~ 932 (1039)
....+.+..+++||-..+.+-.. ...-++. ..|-+.|-.+.-..++..|.+.+++.-+.+ ..| +..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 45567777788887766654431 1112222 123333334445668889999888854421 122 556777888
Q ss_pred HHHHhcCCHHHHHHH
Q 001637 933 GDFAKEGKMHQAREL 947 (1039)
Q Consensus 933 ~~~~~~g~~~~A~~~ 947 (1039)
.+| ..|+.+++..+
T Consensus 236 ~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKV 249 (308)
T ss_pred HHh-ccCCHHHHHHH
Confidence 877 56777765544
No 218
>PRK11906 transcriptional regulator; Provisional
Probab=96.16 E-value=0.27 Score=52.64 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHH
Q 001637 801 TRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFG 879 (1039)
Q Consensus 801 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 879 (1039)
..+|.++-++..+.+ +-|+.....++.+....++++.|...|++... +.|| ..+|......+...|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555555553 23566666666655666666667777776666 5665 4455555555666666666666666
Q ss_pred HHHhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHH
Q 001637 880 EMKKRGLKPDA---STYDTLISGHAKIGNKKESIQIYCE 915 (1039)
Q Consensus 880 ~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 915 (1039)
+..+ ..|.. ......++.|+..+ .++|+++|-+
T Consensus 397 ~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 6554 23322 22333444554433 5556665543
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.13 E-value=0.033 Score=43.75 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=28.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 794 ILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 794 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
+|.+.+++++|+++++.+...+ +.++..|......+...|++++|++.|++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555555555555555555542 22344455555555555555555555555555
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.11 E-value=1.8 Score=43.73 Aligned_cols=200 Identities=17% Similarity=0.072 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 001637 785 QAYYNSLITILCRLGMTRKATSVLEDMRGR-GIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLG 863 (1039)
Q Consensus 785 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 863 (1039)
...+......+...+++..+...+...... ........+......+...++++++++.+.+.......+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 456667777888888888888888887652 133455667777777778888889999998888733222 122222333
Q ss_pred -HHHcCCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccC--hHHHHHHHHHHHhc
Q 001637 864 -IFLGTGSTKEVDDLFGEMKKRGL--KPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPK--TSTYNVLIGDFAKE 938 (1039)
Q Consensus 864 -~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 938 (1039)
++...|++++|...+.++..... ......+......+...++.++|...+.+... ..|+ ...+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 78889999999999998865211 12233344444446678899999999999887 3443 57778888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhC
Q 001637 939 GKMHQARELLKEMQARGRNPN-SSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEK 1001 (1039)
Q Consensus 939 g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 1001 (1039)
+++++|...+..... ..|+ ...+..+...+... +..+++...+.+..+.
T Consensus 216 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALE--LDPDNAEALYNLALLLLEL------------GRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHc------------CCHHHHHHHHHHHHHh
Confidence 899999999999988 5665 33343444333322 1246677777777653
No 221
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.06 E-value=1.9 Score=43.55 Aligned_cols=169 Identities=18% Similarity=0.168 Sum_probs=120.6
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----ChhH
Q 001637 783 LNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMR-GYWVSSHINKALATYTQMINEGVSP----NTAT 857 (1039)
Q Consensus 783 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~ 857 (1039)
.....+......+...+.+..+.+.+.........+ ......... .+...|++++|...|++... ..| ....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ 169 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEA 169 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHH
Confidence 345566667777778888888888888887653332 222222333 67788899999999998866 344 2344
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccC-hHHHHHHHHHH
Q 001637 858 YNILLGIFLGTGSTKEVDDLFGEMKKRGLKP-DASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPK-TSTYNVLIGDF 935 (1039)
Q Consensus 858 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 935 (1039)
+......+...++.+++...+.+..+.. .. ....+..+...+...+++++|...+..... ..|+ ...+..+...+
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 246 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLL 246 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHH
Confidence 4444555677889999999999988742 22 356677777888888899999999999987 4554 45566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 936 AKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 936 ~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
...|+++++...+.+... ..|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~--~~~~ 268 (291)
T COG0457 247 LELGRYEEALEALEKALE--LDPD 268 (291)
T ss_pred HHcCCHHHHHHHHHHHHH--hCcc
Confidence 677789999999999988 5565
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.94 E-value=1.8 Score=45.91 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=104.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 001637 790 SLITILCRLGMTRKATSVLEDMRGRG---IMMDTITYNALMRGYWV---SSHINKALATYTQMINEGVSPNTATYNILLG 863 (1039)
Q Consensus 790 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 863 (1039)
.++-.|....+|+.-+++.+.+.... +......-....-++.+ .|+.++|+.++..++...-.+++.+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 45556888889999999998887641 11112222233445666 8999999999999776656677888887776
Q ss_pred HHH----c-----CCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccC-CHHHHHHHH----HHHHHCCC-cc--
Q 001637 864 IFL----G-----TGSTKEVDDLFGEMKKRGLKPDAS---TYDTLISGHAKIG-NKKESIQIY----CEMITKGY-VP-- 923 (1039)
Q Consensus 864 ~~~----~-----~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g-~~~~A~~~~----~~~~~~~~-~p-- 923 (1039)
+|- . ...+++|...|.+.-+ +.|+.. .+.+|+......- .-.+..++. .-+.++|. .+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 542 2 2347888888888765 335543 2334443322211 112223332 11223332 23
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 924 KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 924 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
|-..+.+++.++.-.|++++|.+..++|.+ ..|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~--l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK--LKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCcc
Confidence 445566788888889999999999999998 55544
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=95.90 E-value=0.24 Score=44.92 Aligned_cols=92 Identities=9% Similarity=-0.056 Sum_probs=63.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCC
Q 001637 790 SLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTG 869 (1039)
Q Consensus 790 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 869 (1039)
...--+...|++++|..+|.-+.-.+. -+..-|..|...|-..+++++|+..|......+ .-|+..+.....++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 344455677888888888887766532 255566777777777788888888888776532 123455556677777788
Q ss_pred ChHHHHHHHHHHHh
Q 001637 870 STKEVDDLFGEMKK 883 (1039)
Q Consensus 870 ~~~~A~~~~~~~~~ 883 (1039)
+.+.|...|..+++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888877775
No 224
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.87 E-value=2.7 Score=43.59 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=32.4
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCCCHH-----HHHHHHHHHHccC-CHHHHHHHHHHHHh
Q 001637 691 CKQGNLEIAFKLWDEMRRN--GIMPNSV-----TCNVLVGGLVGFG-EIEKAMDVLNDMLV 743 (1039)
Q Consensus 691 ~~~g~~~~A~~~~~~m~~~--~~~p~~~-----~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 743 (1039)
.++|+.+.|..++.+.... ...|+.. .+..++....+.+ ++++|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4678888888888887652 2334321 2223333444555 88888888877643
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=1.5 Score=42.32 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001637 613 NYTSLMDGFFKVGKETAALNIAQEMT 638 (1039)
Q Consensus 613 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 638 (1039)
.|..-..+|....++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444556777777777777766665
No 226
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.80 E-value=2.7 Score=50.24 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=14.2
Q ss_pred HHHHhcCChHHHHHHHHhCC
Q 001637 146 HSFCKVGNLSFALDFLRNVD 165 (1039)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~~~ 165 (1039)
+-++..+++.+|+++.++..
T Consensus 685 r~~l~~~~y~~AF~~~RkhR 704 (1265)
T KOG1920|consen 685 RTLLDRLRYKEAFEVMRKHR 704 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34566778888888887653
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.77 E-value=0.075 Score=56.55 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=69.2
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH
Q 001637 783 LNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDT----ITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATY 858 (1039)
Q Consensus 783 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 858 (1039)
.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++.++.+ .|. |
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~---f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLK---F 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chh---H
Confidence 36778999999999999999999999998885 4553 458999999999999999999999998841 221 2
Q ss_pred HHHHH--HHHcCCChHHHHHHHHHHHhCCC
Q 001637 859 NILLG--IFLGTGSTKEVDDLFGEMKKRGL 886 (1039)
Q Consensus 859 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 886 (1039)
..+.. .+....+.++..++++.+.+.|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 11111 11122334466666776666553
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.74 E-value=0.024 Score=45.35 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=8.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 001637 824 NALMRGYWVSSHINKALATYTQM 846 (1039)
Q Consensus 824 ~~l~~~~~~~~~~~~A~~~~~~~ 846 (1039)
+.+...|...|++++|++.|++.
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333344444444444444433
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.18 Score=49.70 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCCCH-HHHHHHH
Q 001637 822 TYNALMRGYWVSSHINKALATYTQMINEGVSP--NTATYNILLGIFLGTGSTKEVDDLFGEMKK-RGLKPDA-STYDTLI 897 (1039)
Q Consensus 822 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~l~ 897 (1039)
.|+.-+..+ +.|++.+|...|...++....- ....+.+|+.++...|++++|..+|..+.+ ++-.|.. ..+--|+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444333 5566777777777666631111 244556666666666777776666666664 3333322 4455556
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 001637 898 SGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 898 ~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
.+..+.|+.++|...|+++++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 666666667777777766665
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.63 E-value=0.19 Score=53.68 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=68.1
Q ss_pred CC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChH
Q 001637 852 SP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDA----STYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTS 926 (1039)
Q Consensus 852 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 926 (1039)
.| +...++.+..+|...|++++|+..|+++++ +.|+. ..|..+..+|...|++++|++.++++++.+ .|
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~--- 144 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL--- 144 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---
Confidence 45 477888899999999999999999999887 45553 347788888999999999999999998731 11
Q ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHHCCC
Q 001637 927 TYNVLIG--DFAKEGKMHQARELLKEMQARGR 956 (1039)
Q Consensus 927 ~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~ 956 (1039)
.|..+.. .+....+.++..++++.+.+-|.
T Consensus 145 ~f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 145 KFSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hHHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2221111 11122234466667777776663
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.61 E-value=3.7 Score=43.35 Aligned_cols=146 Identities=16% Similarity=0.253 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH-HHHH
Q 001637 785 QAYYNSLITILCRLGMTRKATSVLEDMRGRG-IMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATY-NILL 862 (1039)
Q Consensus 785 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 862 (1039)
..+|...++.-.+..-++.|..+|-+..+.| +.+++..+++++.-+ ..|+..-|..+|+--+. ..||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 4566777777777778899999999999887 567888888888655 56788889998887555 35664444 3456
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHH
Q 001637 863 GIFLGTGSTKEVDDLFGEMKKRGLKPD--ASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFA 936 (1039)
Q Consensus 863 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 936 (1039)
.-+...++-+.|..+|+..++. +..+ ..+|..+++-=..-|+...+..+=+.+.+ .-|...+-....+.|+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 6777888989999999976642 2223 46788888887888888888887777776 4554443333334443
No 232
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.59 E-value=0.85 Score=48.97 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=48.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 892 TYDTLISGHAKIGNKKESIQIYCEMITKGYVP--KTSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 892 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
.-..+..++.+.|+.+||++.++++.+. +++ +..+...|+.++...+.+.++..++.+.-+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3345777788999999999999999874 333 235777899999999999999999999765
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.59 E-value=0.58 Score=47.53 Aligned_cols=227 Identities=12% Similarity=0.069 Sum_probs=125.1
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHH-HHHhC-CCCCCh---HhHHHHHHHhhcc
Q 001637 691 CKQGNLEIAFKLWDEMRRN--GIMPNSVTCNVLVGGLVGFGEIEKAMDVLN-DMLVW-GFSPTS---TTIKILLDTSSKS 763 (1039)
Q Consensus 691 ~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~-~~~p~~---~~~~~ll~~~~~~ 763 (1039)
.+..+.++|+..|.+-..+ +......++..+..+..+.|.+++++.+-- +|.-. ...... ..+..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555432 111124455666666677777766655421 11100 000011 1233334444444
Q ss_pred CChhHHHHHHHHHHHc-CCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcC
Q 001637 764 RRGDVILQMHERLVDM-GVRLN---QAYYNSLITILCRLGMTRKATSVLEDMRGRGIM-----MDTITYNALMRGYWVSS 834 (1039)
Q Consensus 764 ~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 834 (1039)
.++.+++++-..-+.. |..+. -.+.-++..+..-.+.++.+++.|+...+.... .....+.+|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444444433321 11120 123344666667777888888888876543111 12356777888888888
Q ss_pred ChHHHHHHHHHHHHC----CCCCC-----hhHHHHHHHHHHcCCChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHH
Q 001637 835 HINKALATYTQMINE----GVSPN-----TATYNILLGIFLGTGSTKEVDDLFGEMKK----RGLKPD-ASTYDTLISGH 900 (1039)
Q Consensus 835 ~~~~A~~~~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~ 900 (1039)
++++|+-+..+..+. ++..= ......+.-++...|++-+|.+.-++..+ .|-.+. .....++.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 888888877776542 22221 12233344577788888888887777654 443321 23445788889
Q ss_pred hccCCHHHHHHHHHHHH
Q 001637 901 AKIGNKKESIQIYCEMI 917 (1039)
Q Consensus 901 ~~~g~~~~A~~~~~~~~ 917 (1039)
...|+.+.|..-|+++.
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 99999988888887754
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.53 Score=49.11 Aligned_cols=140 Identities=13% Similarity=0.055 Sum_probs=93.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCC
Q 001637 791 LITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGS 870 (1039)
Q Consensus 791 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 870 (1039)
-.+.|.+.|++..|...|++.... + .|...-+.++.-.. .. .-..++..+.-++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l------------~~~~~~~~ee~~~~-~~-------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-L------------EYRRSFDEEEQKKA-EA-------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-h------------hccccCCHHHHHHH-HH-------HHHHHhhHHHHHHHhhhh
Confidence 456789999999999999987652 0 11111122221111 11 122455667778889999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccCh-HHHHHHHHHHHhcCCH-HHHHHHH
Q 001637 871 TKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKT-STYNVLIGDFAKEGKM-HQARELL 948 (1039)
Q Consensus 871 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~-~~A~~~~ 948 (1039)
+.+|++.-+++++.+ +++....---+.+|...|+++.|+..|+++++ +.|+. .+-+-|+..-.+...+ ++..++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998854 44555544557788889999999999999998 78844 4555565555555443 4457888
Q ss_pred HHHHHC
Q 001637 949 KEMQAR 954 (1039)
Q Consensus 949 ~~~~~~ 954 (1039)
..|...
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 888874
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.31 E-value=3.3 Score=40.80 Aligned_cols=165 Identities=20% Similarity=0.191 Sum_probs=102.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhHHHHHHHHHH
Q 001637 791 LITILCRLGMTRKATSVLEDMRGRGIMMD---TITYNALMRGYWVSSHINKALATYTQMINE-GVSPNTATYNILLGIFL 866 (1039)
Q Consensus 791 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 866 (1039)
-+..-.+.|++++|.+.|+.+..+ .+-+ ..+--.++.++.+.+++++|+...++.+.. +-.|| .-|..-+.+++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLS 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Confidence 344456778999999999988865 2222 344555667778888999999999988773 33333 22332222222
Q ss_pred c-------CCC---hHHHHHHHHHHHh-C---CCCCCHHH------------HHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 001637 867 G-------TGS---TKEVDDLFGEMKK-R---GLKPDAST------------YDTLISGHAKIGNKKESIQIYCEMITKG 920 (1039)
Q Consensus 867 ~-------~g~---~~~A~~~~~~~~~-~---~~~p~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 920 (1039)
. ..+ ..+|..-|++.++ . ...||... =..+..-|.+.|.+..|..-+++|++.
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~- 196 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN- 196 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-
Confidence 1 122 3444555555553 1 22233311 114566688889999999999999885
Q ss_pred CccChHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 921 YVPKTSTYN---VLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 921 ~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
++-.+.+.. .|..+|...|-.++|...-+-+.. -.||.
T Consensus 197 y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~--N~p~s 237 (254)
T COG4105 197 YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA--NYPDS 237 (254)
T ss_pred cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh--cCCCC
Confidence 443444443 455788889988888888776666 36665
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.30 E-value=0.34 Score=42.52 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=66.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001637 274 DIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGL 353 (1039)
Q Consensus 274 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 353 (1039)
|..++.+++.++++.|+.+....+.+.......+....... ........|+..+..+++.+|+..|++..|+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 44567778888888888888877777765432211110000 122345668888888888888888888888888
Q ss_pred HHHHHHC-CCCCCHhHHHHHHHHHHhc
Q 001637 354 YEEMVKY-GFLPDVVTYSSIMGGLCKC 379 (1039)
Q Consensus 354 ~~~~~~~-g~~~~~~~~~~li~~~~~~ 379 (1039)
.+...+. +++-+..+|..|+.-....
T Consensus 75 vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 75 VDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 8887654 6666677788777754433
No 237
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.25 E-value=4.7 Score=42.34 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=52.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcC
Q 001637 441 TLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKG 520 (1039)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 520 (1039)
..+.-+...|+...|.++-.... .|+..-|-..+.+++..+++++-.++... ++ .+.-|..++..|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHHHCC
Confidence 33444455555555555433331 35555566666666666666555543321 11 3345556666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001637 521 MLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAGKQEVAFDL 563 (1039)
Q Consensus 521 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 563 (1039)
+..+|..+..++. +..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 6666665554411 13344555566666555544
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=7.8 Score=44.64 Aligned_cols=53 Identities=8% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001637 791 LITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMI 847 (1039)
Q Consensus 791 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 847 (1039)
++..+.+..+.+.+..+.+...+. |+..|-.++..+...+..+.-.+...+.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 455566667777777777666543 67778888888877776555555554444
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=0.23 Score=49.01 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCccC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 892 TYDTLISGHAKIGNKKESIQIYCEMITKGYVPK---TSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 892 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
.|+.-++.+ +.|++.+|...|.+-++. ++-+ +..+..|+..+...|++++|..+|..+.+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 455444433 556666666666666653 2211 23444566666666666666666666665
No 240
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.14 E-value=4.8 Score=41.74 Aligned_cols=168 Identities=10% Similarity=0.075 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHcCCCh---HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHH
Q 001637 856 ATYNILLGIFLGTGST---KEVDDLFGEMKK-RGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVL 931 (1039)
Q Consensus 856 ~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 931 (1039)
.++..++.++...+.. ++|..+++.+.. .|-+|. .+..-+..+.+.++.+++.+.+.+|+.. +.-....+...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~--~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPE--VFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH--HHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 4566677788777764 456666666653 443343 3333455666688999999999999874 22122334444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHhhc--CCCchhhHHHhHhHHHHHHHHHHHHHh-CC
Q 001637 932 IGDF---AKEGKMHQARELLKEMQARGRNPNSS--TYDILIG-GWCEL--SNEPELDRTLILSYRAEAKKLFMEMNE-KG 1002 (1039)
Q Consensus 932 ~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~-~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~ 1002 (1039)
+..+ ... ....|...+.+++..-+.|... .=..++. .|... ++.+.. +..+...++++...+ .+
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~------~~i~~l~~~~~~v~~~~~ 234 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSS------EKIESLEELLSIVEHSLG 234 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccch------hHHHHHHHHHHHHHHHhc
Confidence 4333 333 3345666666666554555432 1111111 11111 111111 113445555554432 22
Q ss_pred CCCChhhHHHH-------HHHhhCCCChHHHHHHHHHH
Q 001637 1003 FVPCESTQTCF-------SSTFARPGKKADAQRLLQEF 1033 (1039)
Q Consensus 1003 ~~p~~~~~~~l-------~~~l~~~G~~~eA~~~~~~~ 1033 (1039)
..-+.++..++ +...++.+++++|.+.++-.
T Consensus 235 ~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 235 KQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 23333333322 56677899999999999843
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=1.3 Score=44.68 Aligned_cols=152 Identities=9% Similarity=0.027 Sum_probs=102.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH----HHHHHHcCCC
Q 001637 795 LCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNI----LLGIFLGTGS 870 (1039)
Q Consensus 795 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~ 870 (1039)
..-.|+..+|-..++++.+. .+.|..+++-.-.+|.-.|+.+.-...+++++-. -.||...|.. +.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 44567888888888888876 6668888887788888888888888888887753 3455333322 2234557888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc----ChHHHHHHHHHHHhcCCHHHHHH
Q 001637 871 TKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP----KTSTYNVLIGDFAKEGKMHQARE 946 (1039)
Q Consensus 871 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 946 (1039)
+++|++.-++..+.+ +.|.....+..+.+.-.|++.++.++..+-... ..- -...|-...-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 888888888887642 345555567777788888888888888764331 111 01223333344556678888888
Q ss_pred HHHH
Q 001637 947 LLKE 950 (1039)
Q Consensus 947 ~~~~ 950 (1039)
+|+.
T Consensus 269 IyD~ 272 (491)
T KOG2610|consen 269 IYDR 272 (491)
T ss_pred HHHH
Confidence 8876
No 242
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.08 E-value=2.9 Score=39.52 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=105.7
Q ss_pred cCChhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001637 763 SRRGDVILQMHERLVDMGVRLN-QAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALA 841 (1039)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 841 (1039)
.|-...|+.-+...+. +.|+ +.++|-|+--+...|+++.|.+.|+...+.+..-+....|.-|. +.--|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 3444445555555555 3564 56889899889999999999999999998743333333333333 234588888888
Q ss_pred HHHHHHHCC-CCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHHC
Q 001637 842 TYTQMINEG-VSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDT-LISGHAKIGNKKESIQIYCEMITK 919 (1039)
Q Consensus 842 ~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 919 (1039)
-+.+.-..+ -.|=...|..+. ...=+..+|..-+.+-.+ ..|...|.. ++..| .|++. -+.+++++.+.
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~y--LgkiS-~e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFY--LGKIS-EETLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHH--Hhhcc-HHHHHHHHHhh
Confidence 777766532 122223333222 233446666655444332 234444433 33333 23331 22344444431
Q ss_pred CCccC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001637 920 GYVPK-------TSTYNVLIGDFAKEGKMHQARELLKEMQAR 954 (1039)
Q Consensus 920 ~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 954 (1039)
-..+ ..||..|+.-|...|+.++|..+|+-+...
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1112 357888999999999999999999988873
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.07 E-value=0.34 Score=41.23 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=28.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 794 ILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 794 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
+++..|+.+.|++.|.+.... .+..+..||.-..++.-.|+.++|++-+++.++
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344555555555555555543 233445555555555555555555555555554
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.98 E-value=0.75 Score=51.56 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=86.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCh-----hHHHHHHHHHH-c---CCChHHHH
Q 001637 806 SVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINE-GVSPNT-----ATYNILLGIFL-G---TGSTKEVD 875 (1039)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~-----~~~~~l~~~~~-~---~g~~~~A~ 875 (1039)
.+|.-+... +||. ...++....-.|+-+.+++++.+..+. ++.-.. ..|...+..++ . ....++|.
T Consensus 178 G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 178 GLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 344455543 4443 344555666678999999988887663 233222 22333333222 2 44577888
Q ss_pred HHHHHHHhCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHC--CCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001637 876 DLFGEMKKRGLKPDASTYD-TLISGHAKIGNKKESIQIYCEMITK--GYVP-KTSTYNVLIGDFAKEGKMHQARELLKEM 951 (1039)
Q Consensus 876 ~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 951 (1039)
++++.+.+. -|+...|. --...+...|++++|++.|+++... ..+. ....+.-++..+.-.++|++|.+.|.++
T Consensus 254 ~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 254 ELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 888888762 45554442 3344566788888888888876531 1111 2334455666777788888888888888
Q ss_pred HHC
Q 001637 952 QAR 954 (1039)
Q Consensus 952 ~~~ 954 (1039)
.+.
T Consensus 332 ~~~ 334 (468)
T PF10300_consen 332 LKE 334 (468)
T ss_pred Hhc
Confidence 883
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.84 E-value=0.24 Score=45.54 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChhH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMIN-----EGVSPNTAT 857 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~ 857 (1039)
+...++..+...|++++|+...+++... -+-|...|..+|.+|...|+..+|++.|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455666777788888888888877765 234667777888888888888888888877643 366666543
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.80 E-value=0.43 Score=40.65 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=59.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCCCH--HHHHHHHHHHhccC
Q 001637 829 GYWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKK-RGLKPDA--STYDTLISGHAKIG 904 (1039)
Q Consensus 829 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~--~~~~~l~~~~~~~g 904 (1039)
+....|+.+.|++.|.+.+. +-| ....||.-..++.-+|+.++|++-++++++ .|-.-.. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45677888888888888887 555 467788888888888888888888888876 3322111 12223333466667
Q ss_pred CHHHHHHHHHHHHHC
Q 001637 905 NKKESIQIYCEMITK 919 (1039)
Q Consensus 905 ~~~~A~~~~~~~~~~ 919 (1039)
+-+.|..-|+...+.
T Consensus 130 ~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHhHHHHHHh
Confidence 777777766666553
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.72 E-value=1.2 Score=49.92 Aligned_cols=162 Identities=14% Similarity=0.127 Sum_probs=102.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHH
Q 001637 789 NSLITILCRLGMTRKATSVLEDMRGRGIMMDTI------TYNALMRGYWV----SSHINKALATYTQMINEGVSPNTATY 858 (1039)
Q Consensus 789 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~ 858 (1039)
..++....-.|+-+.+++.+.+..+.+--..+. .|...+..+.. ..+.+.|.++++.+.+ .-|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHH
Confidence 345566666777777877777766542222222 23333433332 3457888888888887 56775555
Q ss_pred HH-HHHHHHcCCChHHHHHHHHHHHhCCC-C--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHH-HH
Q 001637 859 NI-LLGIFLGTGSTKEVDDLFGEMKKRGL-K--PDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVL-IG 933 (1039)
Q Consensus 859 ~~-l~~~~~~~g~~~~A~~~~~~~~~~~~-~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~ 933 (1039)
.. -...+...|++++|++.++++..... - .....+--+.+.+.-.+++++|.+.|.++.+.. .-+..+|..+ +.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 44 45677788999999999997663111 1 122344556777888899999999999998742 2233444443 35
Q ss_pred HHHhcCCH-------HHHHHHHHHHHH
Q 001637 934 DFAKEGKM-------HQARELLKEMQA 953 (1039)
Q Consensus 934 ~~~~~g~~-------~~A~~~~~~~~~ 953 (1039)
+|...|+. ++|.++|+++-.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 56677877 788888777544
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.70 E-value=1.2 Score=39.51 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=28.5
Q ss_pred HHhcCChHHHHHHHHHHHHCC-CCC-ChhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 001637 830 YWVSSHINKALATYTQMINEG-VSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKK 883 (1039)
Q Consensus 830 ~~~~~~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 883 (1039)
..+.|++++|.+.|+.+...- ..| ....-..++.++...|++++|...+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345566666666666655421 001 234444555566666666666666666555
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.61 E-value=5.1 Score=39.51 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=40.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 001637 687 ISASCKQGNLEIAFKLWDEMRRNG-IMP-NSVTCNVLVGGLVGFGEIEKAMDVLNDMLVW 744 (1039)
Q Consensus 687 ~~~~~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 744 (1039)
+..-.+.|++++|.+.|+.+...- ..| ...+...++-++.+.+++++|+..+++.++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 344557788888888888887631 111 2455666777788888888888888887754
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.57 E-value=1.8 Score=46.63 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 859 NILLGIFLGTGSTKEVDDLFGEMKKR-GLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 859 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
..+..++.+.|+.+||++.++++.+. .......+...|+.+|...+.+.++..++.+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34666777889999999999988753 2212334556788888888999999888888643
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.53 E-value=0.1 Score=35.77 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 926 STYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 926 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
.+|..+...|...|++++|+++++++++ ..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 3556677777777777777777777777 56643
No 252
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.51 E-value=7.4 Score=40.93 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=51.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001637 337 LISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGC 416 (1039)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 416 (1039)
.|.-+...|+...|.++-.+.. .||..-|...+.+|+..|+|++-..+-.. ...++-|-..+..|.+.|.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444445555555555443332 24555566666666666666554443221 1233555556666666666
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 001637 417 AMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDT 458 (1039)
Q Consensus 417 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (1039)
..+|..+..++. +..-+..|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 666555554411 13344555566666655543
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.20 E-value=0.53 Score=41.36 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=26.5
Q ss_pred CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 001637 502 VVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQ-NIMPNVFIFAALIDG 550 (1039)
Q Consensus 502 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~ 550 (1039)
..|+..+..+++.+|+.+|++..|+++.+...+. +++.+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4455555555555555555555555555555432 344445555555543
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=5.4 Score=40.14 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=78.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhH
Q 001637 689 ASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDV 768 (1039)
Q Consensus 689 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 768 (1039)
.....|++.+|..+|+........ +......++.+|...|+.+.|..++..+-..--.........-+....+......
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 445667777777777777654211 3455566777777788887777777765322111111121222333333333333
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC
Q 001637 769 ILQMHERLVDMGVRL-NQAYYNSLITILCRLGMTRKATSVLEDMRGRGI-MMDTITYNALMRGYWVSS 834 (1039)
Q Consensus 769 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 834 (1039)
...+..++-. .| |...-..+...|...|+.++|.+.+-.+..+.. ..|...-..++..+...|
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444433 34 677777888888888888888887776665411 113333444444444444
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.16 E-value=2.9 Score=42.83 Aligned_cols=167 Identities=13% Similarity=0.080 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCC--ChhH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGR-GIMMD---TITYNALMRGYWVSSHINKALATYTQMINE---GVSP--NTAT 857 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p--~~~~ 857 (1039)
.|-.+...+.+..++.+++.+-..-... |..|. -....++..++.-.+.++++++.|+...+. .-.| ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4555666666666677777666554432 22221 123344667777778899999999998753 2233 2567
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHh----CCCCCCHHHHHH-----HHHHHhccCCHHHHHHHHHHHHHC----CCcc-
Q 001637 858 YNILLGIFLGTGSTKEVDDLFGEMKK----RGLKPDASTYDT-----LISGHAKIGNKKESIQIYCEMITK----GYVP- 923 (1039)
Q Consensus 858 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~----~~~p- 923 (1039)
+..|...+....++++|..+..++.+ .++..-...|.+ |.-++...|+.-+|.+.-++..+. |-.|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 88899999999999999988877764 333222223332 333577788888888877776552 3222
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 924 KTSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 924 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
-....-.+.+.|...|+.+.|+.-++++-.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 223445677899999999999988887554
No 256
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.12 E-value=0.052 Score=34.61 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=25.3
Q ss_pred HHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHH
Q 001637 913 YCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQAR 945 (1039)
Q Consensus 913 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 945 (1039)
|+++++ +.| |+..|+.|+..|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 566676 677 7788999999999999998886
No 257
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.09 E-value=10 Score=40.99 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHH-cCCHHHHHHHHHHHHhC
Q 001637 468 VSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVK-KGMLDEAANVMRKMKSQ 535 (1039)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~ 535 (1039)
..|...|...+..+-+.+.+.+...+|..|...++. ++..|-.-..-... +-+.+.|..+|.+-++.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 346677777777666666677777777777776443 44444433333222 33377777777766654
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.02 E-value=12 Score=41.56 Aligned_cols=123 Identities=13% Similarity=0.029 Sum_probs=63.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 001637 680 LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDT 759 (1039)
Q Consensus 680 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 759 (1039)
..+|...++--.+.|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+- ..|+......+-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHHH
Confidence 567888888888888888888888877631 0111334555555555557777666666555432 12222222222222
Q ss_pred -hhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH
Q 001637 760 -SSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKAT 805 (1039)
Q Consensus 760 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 805 (1039)
+...|+...|..+++.+.+.- +.-..+-..-+.+..+.|..+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 223345666666666555542 112222222334444555555554
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=7.2 Score=39.30 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=75.6
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 001637 375 GLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSE 454 (1039)
Q Consensus 375 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 454 (1039)
.....|++.+|..+|+........ +...-..+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 445677777777777777665332 3444556667777777777777777766544222122222223344444444444
Q ss_pred HHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHHcC
Q 001637 455 AEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEK--HVVPNVITYSSIINGYVKKG 520 (1039)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 520 (1039)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.++ |.. |...-..|+..+.--|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44443333332 234555555666666666666666555544443 333 4444555555554444
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.96 E-value=3.3 Score=37.58 Aligned_cols=24 Identities=13% Similarity=-0.075 Sum_probs=11.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 001637 278 YNTLISGFCKRGDFVKAKSLIDEV 301 (1039)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~~ 301 (1039)
...++..|.+.+.++++.-++.++
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhh
Confidence 334445555555555555555444
No 261
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.89 E-value=13 Score=41.40 Aligned_cols=184 Identities=10% Similarity=0.022 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 001637 715 SVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITI 794 (1039)
Q Consensus 715 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 794 (1039)
..+|...++--...|+.+...-+|++..- . +..-...|-..+..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli-----------------------------------~-cA~Y~efWiky~~~ 340 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI-----------------------------------P-CALYDEFWIKYARW 340 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh-----------------------------------H-HhhhHHHHHHHHHH
Confidence 45666666666667777766666666531 0 01122344444444
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHcCCCh
Q 001637 795 LCRLGMTRKATSVLEDMRGRGIM--MDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNT-ATYNILLGIFLGTGST 871 (1039)
Q Consensus 795 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 871 (1039)
....|+.+-|..++....+--++ |......+.+ .-..|++..|..+++...+. . |+. ..-..-+....+.|..
T Consensus 341 m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred HHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcch
Confidence 44446666666666555443222 2222223222 33456777777777777764 3 652 2223345556677777
Q ss_pred HHHH---HHHHHHHhCCCCCCH--HHHHHHHHH-HhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcC
Q 001637 872 KEVD---DLFGEMKKRGLKPDA--STYDTLISG-HAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEG 939 (1039)
Q Consensus 872 ~~A~---~~~~~~~~~~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 939 (1039)
+.+. +++....+....+.. ..+.-.... +.-.++.+.|..++.++... .+++...|..++.....++
T Consensus 417 ~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 417 EDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 7776 444433321111111 111111111 33456788888888888873 3335666777776555444
No 262
>PRK09687 putative lyase; Provisional
Probab=93.83 E-value=9.2 Score=39.48 Aligned_cols=218 Identities=9% Similarity=0.014 Sum_probs=94.5
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCChhHH
Q 001637 783 LNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHI----NKALATYTQMINEGVSPNTATY 858 (1039)
Q Consensus 783 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~p~~~~~ 858 (1039)
+|..+....+..+...|. +++...+..+.. .+|+..-...+.++.+.|+. ++++..+..+.. -.|+...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHHHH
Confidence 344444444444444443 222222223322 12444444444455555542 345555555433 23443333
Q ss_pred HHHHHHHHcCCC-----hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHH
Q 001637 859 NILLGIFLGTGS-----TKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIG 933 (1039)
Q Consensus 859 ~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 933 (1039)
...+.++.+.+. ..++...+.... ..++..+-...+.++++.|+ ++|+..+-.+++ .+|..+-..-+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 334444433321 122233332222 12233344444555555554 355555555554 233333333333
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHH
Q 001637 934 DFAKEG-KMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTC 1012 (1039)
Q Consensus 934 ~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 1012 (1039)
++...+ +-+++...+..++. .+|..+-..-+.++.+.+. .++...+-+.++.+. ....
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-------------~~av~~Li~~L~~~~-----~~~~ 240 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-------------KRVLSVLIKELKKGT-----VGDL 240 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-------------hhHHHHHHHHHcCCc-----hHHH
Confidence 444332 23355555555553 4454444444555544432 234444444444322 1234
Q ss_pred HHHHhhCCCChHHHHHHHHHHhh
Q 001637 1013 FSSTFARPGKKADAQRLLQEFYK 1035 (1039)
Q Consensus 1013 l~~~l~~~G~~~eA~~~~~~~~~ 1035 (1039)
.+.+|+..|. .+|...+..+.+
T Consensus 241 a~~ALg~ig~-~~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGD-KTLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCC-HhHHHHHHHHHh
Confidence 5555666666 356666665554
No 263
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=7.2 Score=37.57 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=28.2
Q ss_pred hccCCHHHHHHHHHHHHHCCCccChHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001637 901 AKIGNKKESIQIYCEMITKGYVPKTSTYNVLI------GDFAKEGKMHQARELLKEMQARGRNP 958 (1039)
Q Consensus 901 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~g~~p 958 (1039)
...+++.+|+++|+++.......+..-|..-. -++.-.++.-.+...+++..+ +.|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP 226 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDP 226 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCC
Confidence 34566777777777766533332222232211 111222455566666666666 666
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.56 E-value=4.5 Score=36.71 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=37.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCcccHHHHHHHHHhcCchh
Q 001637 108 KLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHSFCKVGNLSFALDFLRNVDIDVDNVTYNTVIWGLCEQGLAN 187 (1039)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 187 (1039)
.++..+.+.+.+.....+++.+...| +.+....|.++..|++.. .....++++. ..+......+++.|.+.+.++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcCcHH
Confidence 34444444445555555555555444 234445555555555432 2233333432 112333344455555555555
Q ss_pred HHHHHHHHH
Q 001637 188 QGFGLLSIM 196 (1039)
Q Consensus 188 ~a~~~~~~~ 196 (1039)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555554443
No 265
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.52 E-value=3.1 Score=35.92 Aligned_cols=66 Identities=24% Similarity=0.262 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001637 890 ASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGR 956 (1039)
Q Consensus 890 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 956 (1039)
......-++.+.+.|+.+.-.+++.++.+. -+|++....-+..+|.+.|+..++.+++.++.++|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455677788899999999999998752 467888888999999999999999999999999985
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.35 E-value=5 Score=36.54 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=24.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001637 796 CRLGMTRKATSVLEDMRGRGIMMDTI-TYNALMRGYWVSSHINKALATYTQMINE 849 (1039)
Q Consensus 796 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 849 (1039)
++.+..++|+.-|..+.+.|...-++ .---+.....+.|+...|+..|+++-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 44455556666666555544331111 1111222334455555555555555543
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.29 E-value=20 Score=41.61 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhCCCCCCcc--cHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchhHHHHHHHHHh
Q 001637 140 TINVLVHSFCKVGNLSFALDFLRNVDIDVDNV--TYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCR 217 (1039)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 217 (1039)
....-++.+++...+..|+.+-+.....++.. .......-+.+.|++++|...|-+.+..- +| .-++.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhcC
Confidence 45566777788888888888776654333322 22233345667888888888887776331 11 223444444
Q ss_pred cCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 001637 218 IGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSL 297 (1039)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 297 (1039)
..+..+--..++.+.+.|. .+..--+.|+..|.+.++.+.-.++.+.-. .|.. .+-.-..+..+-+.+-+++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 3444444444555555554 344445667777777777776665554433 1211 11123455555566666666555
Q ss_pred HHHH
Q 001637 298 IDEV 301 (1039)
Q Consensus 298 ~~~~ 301 (1039)
-...
T Consensus 486 A~k~ 489 (933)
T KOG2114|consen 486 ATKF 489 (933)
T ss_pred HHHh
Confidence 4443
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.28 E-value=0.27 Score=33.73 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=25.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHH
Q 001637 892 TYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLI 932 (1039)
Q Consensus 892 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 932 (1039)
.+..+...|...|++++|+++|+++++ ..| |+..|..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 445566777777777777777777777 456 455555443
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.19 E-value=2.4 Score=38.46 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=9.0
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 001637 935 FAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 935 ~~~~g~~~~A~~~~~~~~~ 953 (1039)
+...|+|.+|+.+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444455555555554443
No 270
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=19 Score=41.15 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=51.2
Q ss_pred CCCcccHHHHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCC---HHHHHHHHHHHHhCC
Q 001637 465 HNLVSNHVTYS-----SLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGM---LDEAANVMRKMKSQN 536 (1039)
Q Consensus 465 ~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~ 536 (1039)
.|++.+..-|. .+++-+...+.+..|+++...+...-.. ...++.....-+.+..+ .+-+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 35554444333 3456666677777777777666432111 14555555665555532 12222222222221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001637 537 IMPNVFIFAALIDGYFKAGKQEVAFDLYN 565 (1039)
Q Consensus 537 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 565 (1039)
. .+...|..+..---..|+.+.|..+++
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLE 531 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHh
Confidence 2 234556666666667777777777765
No 271
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.15 E-value=0.19 Score=32.02 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 926 STYNVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 926 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
.+|..++..|...|++++|+..|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4567777778888888888888888877 6665
No 272
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.12 E-value=0.19 Score=31.97 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 926 STYNVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 926 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
..|..++..|...|++++|++.++++++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3566777788888888888888888887 6665
No 273
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.06 E-value=25 Score=42.56 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNT--ATYNILLGI 864 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~ 864 (1039)
.|..-.+-+...+.+++|.-.|+..-+. .-.+.+|...|++++|+.+..++.. .-+. .+-..|+.-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHH
Confidence 4444455556667788887777765431 1234577778888888887776543 1122 222557778
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001637 865 FLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMI 917 (1039)
Q Consensus 865 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 917 (1039)
+..+++.-||-++..+... .|. -.+..|++...+++|+.+.....
T Consensus 1009 L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 8888998888888777653 222 23456778888999988776543
No 274
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.04 E-value=1.3 Score=48.71 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=97.5
Q ss_pred HhcCCHHHHHHHHHHH-HHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 001637 342 CKQQALEEALGLYEEM-VKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEA 420 (1039)
Q Consensus 342 ~~~g~~~~A~~~~~~~-~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 420 (1039)
.-.|+++++.++...- .-..+ ...-.+.++..+-+.|-.+.|+++-. |..+ -.....+.|+.+.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHH
Confidence 3567888876666411 11111 23447888888889999999988643 3322 23445678888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 001637 421 FALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEK 500 (1039)
Q Consensus 421 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 500 (1039)
.++.++.. +...|..|.+...+.|+++-|++.|.+..+ +..|+-.|.-.|+.+.-.++.+.....
T Consensus 338 ~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 87654432 677899999999999999999988876653 667777788888888888877777665
Q ss_pred CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 001637 501 HVVPNVITYSSIINGYVKKGMLDEAANVMRK 531 (1039)
Q Consensus 501 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 531 (1039)
|- ++....++.-.|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 44555556667777777776654
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.00 E-value=5.6 Score=36.27 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHH-HHH--HH
Q 001637 821 ITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDAS-TYD--TL 896 (1039)
Q Consensus 821 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~--~l 896 (1039)
..|...+. ..+.+..++|+.-|..+.+.|...- ..............|+..+|...|+++-.-...|... -.. --
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34443333 3567889999999999988754432 2233345567789999999999999998643344332 111 11
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 897 ISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 897 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
...+...|.+++....++-+...+-+-....-.+|.-+-.+.|++.+|...|+++....-.|-
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 224668899998888887776543222455667788788899999999999999887443453
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.34 E-value=0.29 Score=31.74 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 927 TYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 927 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
+|..|+..|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888999999999999999999664
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.01 E-value=3.2 Score=36.97 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMD---TITYNALMRGYWVSSHINKALATYTQMINEGVSPN 854 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 854 (1039)
.+..-+....+.|++++|++.|+.+... .+-. ...--.++.+|.+.+++++|+..+++.++ +.|+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~ 79 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPT 79 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 3344455566777888888888887766 2212 34455667777788888888888888777 5554
No 278
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.76 E-value=1.3 Score=40.75 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 001637 940 KMHQARELLKEMQARGRNPN-SSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSST 1016 (1039)
Q Consensus 940 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 1016 (1039)
-+++|++-|++++. +.|+ ..++..++.++...+.... +..-...++++|...|+++.+. .|+.+.|..-.++
T Consensus 50 miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~-d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 50 MIEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTP-DTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 35667777778888 8885 5788888888776643111 0111335578888888888764 5888888755444
No 279
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.65 E-value=3.2 Score=45.81 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=20.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001637 796 CRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQM 846 (1039)
Q Consensus 796 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 846 (1039)
.++|+++.|.++.++. +++..|..|.......|+++-|.+.|.+.
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3445555554433221 14445555555555555555555555443
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.13 E-value=35 Score=39.55 Aligned_cols=216 Identities=15% Similarity=0.096 Sum_probs=116.3
Q ss_pred ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHH
Q 001637 765 RGDVILQMHERLVDMGVRLNQAYYNSLITILCRL---GMTRKATSVLEDMRGRGIMMDTITYNALMRG--YWVSSHINKA 839 (1039)
Q Consensus 765 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A 839 (1039)
+.+.|..++.+..+.|. |+. ...+..+|... .+...|.++|......|.. +..-+.++.-. -....+.+.|
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence 55667777777776652 222 22234444333 3567888888888877633 22222222111 1133467888
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----hc--cCCHHHHHHH
Q 001637 840 LATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGH-----AK--IGNKKESIQI 912 (1039)
Q Consensus 840 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~--~g~~~~A~~~ 912 (1039)
..+|++..+.| .|....-...+..+.. ++++.+.-.+..+.+.|.+-....-..+.+.. .+ ..+.+.+...
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 88888888876 4432222333444444 77888877777777655432221111111111 11 2255667777
Q ss_pred HHHHHHCCCccChHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHhHhHH
Q 001637 913 YCEMITKGYVPKTSTYNVLIGDFAKE----GKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLILSYR 988 (1039)
Q Consensus 913 ~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 988 (1039)
+.+....| +......|...|..- .+++.|...+......+ ......+++.+ +.|- ++ .. +
T Consensus 462 ~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~-e~g~--g~-----~~-~ 525 (552)
T KOG1550|consen 462 YSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMH-EHGE--GI-----KV-L 525 (552)
T ss_pred HHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHH-hcCc--Cc-----ch-h
Confidence 77766543 555556666555432 26888888888887744 44444444332 2221 11 11 3
Q ss_pred HHHHHHHHHHHhCC
Q 001637 989 AEAKKLFMEMNEKG 1002 (1039)
Q Consensus 989 ~~a~~~~~~~~~~~ 1002 (1039)
..|.++++++.+.+
T Consensus 526 ~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 526 HLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhcC
Confidence 56888888776543
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.99 E-value=26 Score=37.93 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 001637 820 TITYNALMRGYWVSSHINKALATYTQMINEGVSP---NTATYNILLGIFLGTGSTKEVDDLFGEMKK 883 (1039)
Q Consensus 820 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 883 (1039)
..+|..++..+.+.|+++.|...+.++...+..+ .+.....-+..+...|+.++|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666666666666666666666655422111 222233334445555666666666665554
No 282
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=5.6 Score=40.38 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=60.4
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCcccHHHHHHHHHHHHhcCChHHH
Q 001637 414 AGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKH---NLVSNHVTYSSLIDGCCKLGDMSAA 490 (1039)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 490 (1039)
.|+..+|-..++++++.-+. |..++.-.=+++.-.|+.+.-...+++++.. ++|-.+..-....-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34444444444444443222 4444444455555555555555555555433 1111122222233344556677777
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 001637 491 ESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRK 531 (1039)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 531 (1039)
++.-++..+.+.. |...-.++...+--.|+..++.+.+.+
T Consensus 195 Ek~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 7776666665433 555556666666666777777666554
No 283
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.76 E-value=0.53 Score=29.92 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 822 TYNALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 822 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
+|..++..|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 444555555555555555555555554
No 284
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.75 E-value=2.8 Score=38.67 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHCCCccC-hHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 001637 906 KKESIQIYCEMITKGYVPK-TSTYNVLIGDFAKEG-----------KMHQARELLKEMQARGRNPNSSTYDILIGG 969 (1039)
Q Consensus 906 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 969 (1039)
+++|+.-|++++. +.|+ ..++..++.+|...+ .+++|.+.|+++.+ .+|+...|+.-+..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHH
Confidence 4456666666666 6674 356666666655333 25677777888887 78887777665544
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.73 E-value=9 Score=35.99 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=55.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHH
Q 001637 933 GDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGG-WCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQT 1011 (1039)
Q Consensus 933 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 1011 (1039)
..+...|++++|+.-++..+. .|....+..++.. +.+ -.+.++.+++|...++...+.++.+- ...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLAr--------vq~q~~k~D~AL~~L~t~~~~~w~~~--~~e 163 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLAR--------VQLQQKKADAALKTLDTIKEESWAAI--VAE 163 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHhccccccHHHH--HHH
Confidence 566778888888888888776 3322333333321 100 02345667788887766654432221 233
Q ss_pred HHHHHhhCCCChHHHHHHHHHHhhc
Q 001637 1012 CFSSTFARPGKKADAQRLLQEFYKS 1036 (1039)
Q Consensus 1012 ~l~~~l~~~G~~~eA~~~~~~~~~~ 1036 (1039)
.-||+|...|+.+||+.-|++.+.+
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHc
Confidence 4588888889999998888866655
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.60 E-value=2.5 Score=42.70 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChhHHH
Q 001637 785 QAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMIN-----EGVSPNTATYN 859 (1039)
Q Consensus 785 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~ 859 (1039)
..++..++..+..+|+.+.+.+.+++.... -+-|...|..++.+|.+.|+...|+..|+++.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 346777889999999999999999999887 345788999999999999999999999998875 36777665544
Q ss_pred HHH
Q 001637 860 ILL 862 (1039)
Q Consensus 860 ~l~ 862 (1039)
...
T Consensus 232 ~y~ 234 (280)
T COG3629 232 LYE 234 (280)
T ss_pred HHH
Confidence 433
No 287
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.53 E-value=1.8 Score=42.58 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=43.2
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 001637 381 RLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFN 460 (1039)
Q Consensus 381 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (1039)
.++--...++.|.+.|+..|..+|+.|+..+-+.... | ...+..+.--|- .+-+-++++++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P-~nvfQ~~F~HYP--~QQ~C~I~vLe 147 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------P-QNVFQKVFLHYP--QQQNCAIKVLE 147 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------c-HHHHHHHHhhCc--hhhhHHHHHHH
Confidence 3444445556666667766777777666654332111 0 001111111111 12234556666
Q ss_pred HHHHCCCcccHHHHHHHHHHHHhcCC
Q 001637 461 LILKHNLVSNHVTYSSLIDGCCKLGD 486 (1039)
Q Consensus 461 ~~~~~~~~~~~~~~~~li~~~~~~g~ 486 (1039)
+|...|+.||..+-..|++++.+.+.
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhccccc
Confidence 66666666666666666666665553
No 288
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.42 E-value=11 Score=32.70 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 001637 683 YNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWG 745 (1039)
Q Consensus 683 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 745 (1039)
....++....+|+-+.--+++..+.+. -.+++.....+..+|.+.|+..++-++++++.+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334445555566665555555555431 24455555566666666666666666666665544
No 289
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.10 E-value=2.4 Score=41.78 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=76.2
Q ss_pred CChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 001637 329 PNLITHTTLISAYCK-----QQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVS 403 (1039)
Q Consensus 329 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 403 (1039)
.|-.+|-+.+..|.. .+.++-.-..++.|.+.|+..|..+|+.|++.+-|..-... .+|+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~----------- 131 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV----------- 131 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH-----------
Confidence 466677777777764 36677777788999999999999999999987654332111 111111
Q ss_pred HHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHH
Q 001637 404 YTTLIDSLFKA-GCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPS-EAEDTFNLIL 463 (1039)
Q Consensus 404 ~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~ 463 (1039)
+..- .+-+=++.++++|...|+.||..+-..|++++.+.+-.- +..++.-.|.
T Consensus 132 -------F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 -------FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred -------HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1111 122346788899999999999999889999888776543 3333433443
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.07 E-value=14 Score=34.74 Aligned_cols=91 Identities=4% Similarity=0.004 Sum_probs=45.5
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCC
Q 001637 863 GIFLGTGSTKEVDDLFGEMKKRGLKPDA--STYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGK 940 (1039)
Q Consensus 863 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 940 (1039)
..+...|++++|+..++..+......+. ..--.|.......|.+++|++.++.....++ .+.....-++.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 4555566666666666655532111110 1111233445556666666666665543221 12223334456666666
Q ss_pred HHHHHHHHHHHHHCC
Q 001637 941 MHQARELLKEMQARG 955 (1039)
Q Consensus 941 ~~~A~~~~~~~~~~g 955 (1039)
-++|+..|++.++++
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666643
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.05 E-value=0.31 Score=31.05 Aligned_cols=31 Identities=32% Similarity=0.640 Sum_probs=17.3
Q ss_pred HHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHH
Q 001637 843 YTQMINEGVSPN-TATYNILLGIFLGTGSTKEVD 875 (1039)
Q Consensus 843 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 875 (1039)
|++.++ +.|+ ...|+.+..++...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344444 4453 556666666666666666654
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.85 E-value=27 Score=36.30 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHCCCccChHHHHHH
Q 001637 908 ESIQIYCEMITKGYVPKTSTYNVL 931 (1039)
Q Consensus 908 ~A~~~~~~~~~~~~~p~~~~~~~l 931 (1039)
.+.++++.+.+.|+++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 445555555555555544444443
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.78 E-value=0.69 Score=29.95 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 001637 823 YNALMRGYWVSSHINKALATYTQMI 847 (1039)
Q Consensus 823 ~~~l~~~~~~~~~~~~A~~~~~~~~ 847 (1039)
|..|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555566666666655533
No 294
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.78 E-value=19 Score=34.38 Aligned_cols=193 Identities=17% Similarity=0.097 Sum_probs=108.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCC
Q 001637 792 ITILCRLGMTRKATSVLEDMRGRGIMMD-TITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTG 869 (1039)
Q Consensus 792 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 869 (1039)
+..|-..|-+.-|.--|.+... +.|+ +..||.++-.+...|+++.|.+.|+...+ +.|. ..+...-.-++.--|
T Consensus 72 GvlYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecC
Confidence 3455566677777777777766 3555 77899999899999999999999999998 6674 222222333455679
Q ss_pred ChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHH-HHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHH
Q 001637 870 STKEVDDLFGEMKKR-GLKPDASTYDTLISGHAKIGNKKESIQIY-CEMITKGYVPKTSTYNVLIGDFAKEGKMHQAREL 947 (1039)
Q Consensus 870 ~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 947 (1039)
+++-|.+-+.+.-+. ...|-...|--++. ..-+..+|..-+ ++... . |..-|..-+-.|. .|+. ....+
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~--~--d~e~WG~~iV~~y-Lgki-S~e~l 218 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK--S--DKEQWGWNIVEFY-LGKI-SEETL 218 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh--c--cHhhhhHHHHHHH-Hhhc-cHHHH
Confidence 999998877666542 22333334433333 234566666544 33332 2 4344444332221 2332 12344
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCC
Q 001637 948 LKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGF 1003 (1039)
Q Consensus 948 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 1003 (1039)
++++..- ..-+......|-.+|.-.|++ -...|..++|..+|+-+....+
T Consensus 219 ~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~-----~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 219 MERLKAD-ATDNTSLAEHLTETYFYLGKY-----YLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHhh-ccchHHHHHHHHHHHHHHHHH-----HhccccHHHHHHHHHHHHHHhH
Confidence 5555541 122222222222233322221 1234667899999988765543
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.56 E-value=1.9 Score=43.61 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHcCCChHHHHHHHHHH
Q 001637 830 YWVSSHINKALATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEM 881 (1039)
Q Consensus 830 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 881 (1039)
|.++|.+++|+.+|.+.+. +.| +++++..-..+|.+..++..|+.-...+
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 4444555555555544444 344 4444444444444444444444444433
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.38 E-value=22 Score=34.50 Aligned_cols=30 Identities=17% Similarity=0.426 Sum_probs=20.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 001637 341 YCKQQALEEALGLYEEMVKYGFLPDVVTYS 370 (1039)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 370 (1039)
-+..+++.+|..+|+++.+..+..+..-|.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 346678888888888887766554444443
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.98 E-value=3.7 Score=41.57 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhH
Q 001637 891 STYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQA-----RGRNPNSSTY 963 (1039)
Q Consensus 891 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~ 963 (1039)
.++..++..+..+|+.+.+.+.+++++. ..| +...|..++.+|.+.|+...|+..++++.+ .|+.|-+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3555677888889999999999999988 677 788899999999999999999999888877 3666655433
No 298
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.94 E-value=0.59 Score=29.65 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 927 TYNVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 927 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
+|..++..|...|++++|.+.|++.++ +.||
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 466677777777777777777777776 5553
No 299
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.80 E-value=6.6 Score=37.97 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=61.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhh
Q 001637 902 KIGNKKESIQIYCEMITKGYVPKT-STYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELD 980 (1039)
Q Consensus 902 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~ 980 (1039)
...+++.|+.-|.+.+. +.|.. ..|..-+-.|.+..+|+.+.+-..++++ +.||.+--..++..|....+.
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~---- 93 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG---- 93 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc----
Confidence 44556666666666665 55644 4555556666666777777777777776 667655444334333322111
Q ss_pred HHHhHhHHHHHHHHHHHH----HhCCCCCChhhHHHHHHHhhCCCChHHHHHHHH
Q 001637 981 RTLILSYRAEAKKLFMEM----NEKGFVPCESTQTCFSSTFARPGKKADAQRLLQ 1031 (1039)
Q Consensus 981 ~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~l~~~l~~~G~~~eA~~~~~ 1031 (1039)
+++|...+.++ .+..+.|..++...|-++=.+.=...++.++++
T Consensus 94 -------~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 94 -------YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred -------ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 23444444444 223334444455555555555555555555444
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.73 E-value=9.3 Score=36.19 Aligned_cols=62 Identities=10% Similarity=0.014 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMD--TITYNALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
.+..+++.|.+.|+.++|.+.+.++.+....+. ...+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 556667777777777777777777766533333 23445556666666666666666555543
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.62 E-value=4.4 Score=38.37 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 001637 821 ITYNALMRGYWVSSHINKALATYTQMINEGVSPN--TATYNILLGIFLGTGSTKEVDDLFGEMKK 883 (1039)
Q Consensus 821 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 883 (1039)
..+..++.-|.+.|+.++|++.|.++.+....|. ...+..++.+....|++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567778888899999999999999888655554 45566777888888888888888777764
No 302
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.39 E-value=30 Score=34.82 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 898 SGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 898 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
..|..+|.+.+|.++.++.++ +.| +...|-.|+..|...||--.|.+-++++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 345566666666666666665 455 555566666666666665555555554443
No 303
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.28 E-value=4.4 Score=37.84 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=11.9
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 001637 830 YWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 830 ~~~~~~~~~A~~~~~~~~~ 848 (1039)
+...|++++|..-|...++
T Consensus 105 ~F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE 123 (271)
T ss_pred hhhcccHHHHHHHHHHHHH
Confidence 4456666666666666665
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.25 E-value=35 Score=35.50 Aligned_cols=130 Identities=16% Similarity=0.265 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHc--CC----ChHHHHHHHHHHHhC-CC--CCCHHHHHHHHHHHhccCCH
Q 001637 836 INKALATYTQMINEGVSPNTATYNILLGIFLG--TG----STKEVDDLFGEMKKR-GL--KPDASTYDTLISGHAKIGNK 906 (1039)
Q Consensus 836 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~-~~--~p~~~~~~~l~~~~~~~g~~ 906 (1039)
+++.+.+|+.|.+.|..-+..+|.+..-.... .. ....|.++|+.|.+. ++ .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566777888888877776555543332222 22 256788899999873 21 3555666666554 44443
Q ss_pred ----HHHHHHHHHHHHCCCccC-h-HHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 001637 907 ----KESIQIYCEMITKGYVPK-T-STYNVLIGDFAKEG--KMHQARELLKEMQARGRNPNSSTYDILI 967 (1039)
Q Consensus 907 ----~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 967 (1039)
++.+..|+.+.+.|+..+ . .....++....... ...++.++++.+.+.|+++....|..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 567788888888788873 3 33333333332222 2568999999999999988766666554
No 305
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.13 E-value=44 Score=36.50 Aligned_cols=189 Identities=12% Similarity=0.133 Sum_probs=107.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLG 863 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 863 (1039)
|.....+++..+...-.+.-.+.+-.+|.+.| .+-..|..++..|... ..++-..+|+++.+ ..-+.+....-+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHH
Confidence 55555566677776666766777777776643 3555666677777666 55666677777766 3334344444444
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCccChHHHHHHHHHHH
Q 001637 864 IFLGTGSTKEVDDLFGEMKKRGLKP------DASTYDTLISGHAKIGNKKESIQIYCEMITK-GYVPKTSTYNVLIGDFA 936 (1039)
Q Consensus 864 ~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 936 (1039)
.+...++.+.+..+|.++... +-| -...|..+... --.+.+.-+.+..++.+. |..--...+..+-.-|.
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 444447777777777777642 122 11345555543 133556666666665543 12122344555556677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-hcCCCchhhH
Q 001637 937 KEGKMHQARELLKEMQARGRNPNSSTYDILIGGWC-ELSNEPELDR 981 (1039)
Q Consensus 937 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~~~~~~~~~ 981 (1039)
...+|.+|+++...+++.. ..|..+--.++..+. +...|..++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd~y~~~~~~e~ 261 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENLRDKYRGHSQLEE 261 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHHHhccchhHHH
Confidence 7788888888888887743 345554444444332 2334444443
No 306
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.04 E-value=3.3 Score=38.63 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=70.8
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHH
Q 001637 863 GIFLGTGSTKEVDDLFGEMKKRGLKP-----DASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFA 936 (1039)
Q Consensus 863 ~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 936 (1039)
.-+...|++++|..-|..+++.- ++ ....|..-..++.+.+.++.|++-..+.++ +.| ......--..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 34567899999999999999742 22 234566666778899999999999999987 555 2233333456888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 937 KEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 937 ~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
+..++++|++-++++++ ..|..
T Consensus 180 k~ek~eealeDyKki~E--~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE--SDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHH--hCcch
Confidence 89999999999999999 67754
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.96 E-value=1.1 Score=28.28 Aligned_cols=26 Identities=12% Similarity=0.349 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 823 YNALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 823 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
|..+...+...|++++|++.|++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444555555555554444
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.65 E-value=14 Score=33.79 Aligned_cols=86 Identities=16% Similarity=0.253 Sum_probs=41.4
Q ss_pred HcCCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHH
Q 001637 866 LGTGSTKEVDDLFGEMKK-RGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQA 944 (1039)
Q Consensus 866 ~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 944 (1039)
...++.+++..++..+.- .+-.|...++...+ +...|++.+|+.+|+++.+. .|....-.+|+..|....+-..=
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHH
Confidence 455666666666666654 22222233333333 44667777777777776552 34333333444333332222222
Q ss_pred HHHHHHHHHCC
Q 001637 945 RELLKEMQARG 955 (1039)
Q Consensus 945 ~~~~~~~~~~g 955 (1039)
..+.+++++.+
T Consensus 97 r~~A~evle~~ 107 (160)
T PF09613_consen 97 RRYADEVLESG 107 (160)
T ss_pred HHHHHHHHhcC
Confidence 33455555543
No 309
>PRK09687 putative lyase; Provisional
Probab=87.40 E-value=38 Score=34.99 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSS-HINKALATYTQMINEGVSPNTATYNILL 862 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 862 (1039)
+..+....+.++.+.|+ .+|+..+-.+.+. +|...-...+.++...+ +..++...+.+++. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444444555555543 3455555555442 23333333333333332 13455555555553 33444444455
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 863 GIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 863 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
.++.+.|. .+|...+-+..+.+ + .....+.++...|.. +|...+.++.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555555 34555555554432 1 122445556666664 56666666665
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.10 E-value=66 Score=37.35 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=48.7
Q ss_pred HHHcCChhHHHHHHHHHHHCCCcc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCH
Q 001637 446 LFKAGRPSEAEDTFNLILKHNLVS---NHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGML 522 (1039)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 522 (1039)
+.+.+.+++|+++-+..... .+ -...+...|..+...|++++|-...-.|... +..-|...+..+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence 34445555555544333222 12 2234555666666666677666666666654 555566555555555554
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001637 523 DEAANVMRKMKSQNIMPNVFIFAALIDGYFK 553 (1039)
Q Consensus 523 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 553 (1039)
.....+ +.....+.+...|..++-.+..
T Consensus 440 ~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 432222 2221112334455555555544
No 311
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.68 E-value=35 Score=33.72 Aligned_cols=261 Identities=16% Similarity=0.179 Sum_probs=145.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CC--CCChHhHHHHHHHhhccC
Q 001637 693 QGNLEIAFKLWDEMRRNGIMP---NSVTCNVLVGGLVGFGEIEKAMDVLNDMLVW---GF--SPTSTTIKILLDTSSKSR 764 (1039)
Q Consensus 693 ~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~ll~~~~~~~ 764 (1039)
...+++|+.-|++..+..... ...+.-.++..+.+.+++++.++.+++++.. .+ .-+....+.++.-.+..+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 446677777777776532111 1334455677777777777777777776531 11 123345666666666667
Q ss_pred ChhHHHHHHHHHHHcCC-CccHH----HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC---CC---CHHHHHHHHH
Q 001637 765 RGDVILQMHERLVDMGV-RLNQA----YYNSLITILCRLGMTRKATSVLEDMRGR-----GI---MM---DTITYNALMR 828 (1039)
Q Consensus 765 ~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~---~~~~~~~l~~ 828 (1039)
+.+....+|+.-++.-- ..+.. +-..|...|...|.+..-.++++++... |- +. -...|..-|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 77666666665443200 11222 3356788888888888888888876532 11 00 1245666678
Q ss_pred HHHhcCChHHHHHHHHHHHHC-CCCCChhHHHHH----HHHHHcCCChHHHHHHHHHH-H---hCCCCCCHH---HHHHH
Q 001637 829 GYWVSSHINKALATYTQMINE-GVSPNTATYNIL----LGIFLGTGSTKEVDDLFGEM-K---KRGLKPDAS---TYDTL 896 (1039)
Q Consensus 829 ~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~-~---~~~~~p~~~---~~~~l 896 (1039)
.|....+-.+--.+|++.+.- ..-|.+.....+ ..+..+.|++++|..-|=++ . +.| .|... -|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHH
Confidence 888888888888889887752 234544443322 22445788899887544444 3 234 34333 24455
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCC--ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 001637 897 ISGHAKIGNKKESIQIYCEMITKGY--VPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSS 961 (1039)
Q Consensus 897 ~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 961 (1039)
..++.+.|-- =|+.-..+.+ +|.......|+.+|..+ +..+-..+++.- ++++-.|+.
T Consensus 279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~~-~~~IM~DpF 338 (440)
T KOG1464|consen 279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKSN-RSNIMDDPF 338 (440)
T ss_pred HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHhh-hccccccHH
Confidence 6666665521 1111111122 34456778889998654 554433333322 223444554
No 312
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.61 E-value=68 Score=37.03 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 001637 823 YNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAK 902 (1039)
Q Consensus 823 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 902 (1039)
.+--+.-+...|+..+|.++-.+.. -||...|-.-+.++...++|++-+++-+.... +.-|.=++..|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHh
Confidence 3444555667788888877666543 47777777788889999999887777665542 3344446778889
Q ss_pred cCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001637 903 IGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEM 951 (1039)
Q Consensus 903 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 951 (1039)
.|+.+||.+++-+... .. -...+|.+.|++.+|.++.-+-
T Consensus 757 ~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred cccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHHh
Confidence 9999999988876532 11 4567788888888888775543
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.00 E-value=18 Score=40.11 Aligned_cols=132 Identities=17% Similarity=0.125 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001637 368 TYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLF 447 (1039)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 447 (1039)
..+.++..+.+.|..++|+++ .+|.... .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 345566667777777777764 2333221 222346788888877766553 5667888888888
Q ss_pred HcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHH
Q 001637 448 KAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAAN 527 (1039)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 527 (1039)
+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. | .-..+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHH
Confidence 88888888888876654 556666777777766666666666555532 2 23345566788888877
Q ss_pred HHHHH
Q 001637 528 VMRKM 532 (1039)
Q Consensus 528 ~~~~~ 532 (1039)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 76543
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.81 E-value=18 Score=32.49 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=26.3
Q ss_pred cCCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 867 GTGSTKEVDDLFGEMKK-RGLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 867 ~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
..++.+++..++..+.- .+-.|...++...+ +...|++++|+.+|+++.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhc
Confidence 45666666666666654 22222333333333 3356666666666666654
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.74 E-value=2.5 Score=42.72 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=70.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcC
Q 001637 862 LGIFLGTGSTKEVDDLFGEMKKRGLKP-DASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEG 939 (1039)
Q Consensus 862 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 939 (1039)
..-|.++|+++||++.|...+. ..| +.+++..-..+|.+..++..|+.-...++. +.- -...|.--+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--Ld~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--LDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--hhHHHHHHHHHHHHHHHHHh
Confidence 3467889999999999999886 345 667777777789999999988887777765 221 2234555555556678
Q ss_pred CHHHHHHHHHHHHHCCCCCCh
Q 001637 940 KMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 940 ~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
+..+|.+-++..++ ++|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 89999999999999 88974
No 316
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.65 E-value=30 Score=32.09 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=7.5
Q ss_pred CCCCCHhHHHHHHHHHHhcC
Q 001637 361 GFLPDVVTYSSIMGGLCKCG 380 (1039)
Q Consensus 361 g~~~~~~~~~~li~~~~~~g 380 (1039)
++.|+...+..+++.+.+.|
T Consensus 24 ~i~~~~~L~~lli~lLi~~~ 43 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNG 43 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 33333333333333333333
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.47 E-value=85 Score=37.06 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHHHCC-Ccc--ChHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 001637 903 IGNKKESIQIYCEMITKG-YVP--KTSTYNV-----LIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 903 ~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
.|+..|..+......... -.| ....|.. +...|...|+.++|.+..++..+
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677777665555543211 113 3345533 33457788999999988887765
No 318
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.77 E-value=24 Score=38.12 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=67.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHh---CCCC--C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCC--
Q 001637 792 ITILCRLGMTRKATSVLEDMRG---RGIM--M---DTITYNALMRGYWVSSHINKALATYTQMIN-------EGVSPN-- 854 (1039)
Q Consensus 792 ~~~~~~~g~~~~A~~~~~~~~~---~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~p~-- 854 (1039)
...+...|++..|.+++...-- .|.. | .-..||.|+-.+.+.|.+.-+..+|.+.++ .|++|.
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 4566777899999888865421 1211 1 234467777777777888888888877763 365552
Q ss_pred ---------hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001637 855 ---------TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGH 900 (1039)
Q Consensus 855 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 900 (1039)
..+|| ..-.+.+.|+.-.|.+.|.+...- +..++..|-.|..+|
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 22333 334677889999999988888752 234455665555554
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.58 E-value=0.053 Score=49.70 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=41.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCcccHHHHHHHHHhcCchhHH
Q 001637 110 IYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHSFCKVGNLSFALDFLRNVDIDVDNVTYNTVIWGLCEQGLANQG 189 (1039)
Q Consensus 110 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 189 (1039)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~----~~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS----NNYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS----SSS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc----cccCHHHHHHHHHhcchHHHH
Confidence 3444445555555555555554444444555666666666666555555555432 113334455555555555555
Q ss_pred HHHHHH
Q 001637 190 FGLLSI 195 (1039)
Q Consensus 190 ~~~~~~ 195 (1039)
.-+|.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555543
No 320
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.36 E-value=9.2 Score=37.50 Aligned_cols=97 Identities=19% Similarity=0.134 Sum_probs=59.5
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCChhhHH--HHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCC----
Q 001637 937 KEGKMHQARELLKEMQAR----GRNPNSSTYD--ILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPC---- 1006 (1039)
Q Consensus 937 ~~g~~~~A~~~~~~~~~~----g~~p~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~---- 1006 (1039)
....+++|++.+.-++-. +-+|...... -+.|.|-..++. +. ...++..|.+.|+++.+..-.|.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~-~~----E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE-EN----EKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH-HH----HHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 344666666665554432 2233322332 333334343332 22 23456889999999976543333
Q ss_pred -hhhHHHHHHHhhCCCChHHHHHHHHHHhhccC
Q 001637 1007 -ESTQTCFSSTFARPGKKADAQRLLQEFYKSND 1038 (1039)
Q Consensus 1007 -~~~~~~l~~~l~~~G~~~eA~~~~~~~~~~~~ 1038 (1039)
....+.+|++..|.|+.+||.+.+.++...++
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 23666789999999999999999998877664
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.34 E-value=2.2 Score=28.49 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 926 STYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 926 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
.+++.|+..|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888888776
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.80 E-value=69 Score=34.64 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChh-hHHH
Q 001637 938 EGKMHQARELLKEMQARGRNPNSS----TYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCES-TQTC 1012 (1039)
Q Consensus 938 ~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ 1012 (1039)
.|+.++|+.++-.+.+ ++||.. -|..++..+.+..+..+..- ...+.++-+++. ..-|.+ +|..
T Consensus 711 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~ 779 (831)
T PRK15180 711 EGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTI--------TSYEHLDYAKKL-LVFDSENAYAL 779 (831)
T ss_pred cccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCccc--------chhhhHhhhhhh-eeeccchHHHH
Confidence 5789999999888887 889865 34455555544433222110 011122222211 222333 3321
Q ss_pred --HHHHhhCCCChHHHHHHHHHHhhcc
Q 001637 1013 --FSSTFARPGKKADAQRLLQEFYKSN 1037 (1039)
Q Consensus 1013 --l~~~l~~~G~~~eA~~~~~~~~~~~ 1037 (1039)
.+--..+..++.+|.++|+++.|.+
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 780 KYAALNAMHLRDYTQALQYWQRLEKVN 806 (831)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHhcc
Confidence 1222235678999999999988765
No 323
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.54 E-value=1e+02 Score=36.34 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=19.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001637 512 IINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDG 550 (1039)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 550 (1039)
....+.-.|+++.|++.+-+ ..+...|.+++...+.-
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~ 300 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAY 300 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHH
Confidence 34555667888888887766 11233455555554443
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.46 E-value=1.5 Score=40.06 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCH
Q 001637 212 VKGFCRIGMVKYGEWVMDNLVNGGVCRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDF 291 (1039)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 291 (1039)
++.+.+.+........++.+...+...+....|.++..|++.++.++..+++... +.+-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 3444444555555555555555444455666666777777776666666655511 112233455566666666
Q ss_pred HHHHHHHHHH
Q 001637 292 VKAKSLIDEV 301 (1039)
Q Consensus 292 ~~A~~~~~~~ 301 (1039)
++|.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 6666666554
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.38 E-value=1.2 Score=27.93 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=22.5
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHhh
Q 001637 1009 TQTCFSSTFARPGKKADAQRLLQEFYK 1035 (1039)
Q Consensus 1009 ~~~~l~~~l~~~G~~~eA~~~~~~~~~ 1035 (1039)
++..++.++.+.|+.++|++.++++++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456888999999999999999996643
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.23 E-value=1.7 Score=27.16 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 929 NVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 929 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
..++.+|.+.|++++|.+.|+++++ -.|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~--~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK--RYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--HCcC
Confidence 3455666677777777777777776 3454
No 327
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.73 E-value=41 Score=31.26 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=80.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 001637 387 MLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHN 466 (1039)
Q Consensus 387 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (1039)
+..+.+.+.++.|+...+..+++.+.+.|++.. +..++..++-+|.......+-.+. +....+.++--+|.+.=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 455666677888888888888998888887654 444555565556655554443322 22333333333333320
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001637 467 LVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKS 534 (1039)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 534 (1039)
...+..++..+...|++-+|.+..+..... +...-..++.+..+.++...=..+++-..+
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 013566777788888888888888775332 233345566777777776555555555444
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.59 E-value=2.3 Score=26.85 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 892 TYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 892 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
.|..+...+...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566667777777777777777766
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.35 E-value=1.1e+02 Score=36.05 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=99.6
Q ss_pred ChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHh-----HHHHHHHHHHhcCChhhHHHHHHHHHhCCCC----C
Q 001637 330 NLITHTTLISAYC-KQQALEEALGLYEEMVKYGFLPDVV-----TYSSIMGGLCKCGRLAEAKMLFREMEKMGVD----P 399 (1039)
Q Consensus 330 ~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~ 399 (1039)
+..++-.+...+. ...++++|+..+++.....-.++.. ....++..+.+.+... |+...++.++.--. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3456666777766 6789999999999876432223321 2334567777777666 99888887653111 1
Q ss_pred CHHHHHHH-HHHHHhcCCHhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHCC-------
Q 001637 400 NHVSYTTL-IDSLFKAGCAMEAFALQSQMMVRG---VAFDVVVYTTLMDGLF--KAGRPSEAEDTFNLILKHN------- 466 (1039)
Q Consensus 400 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~------- 466 (1039)
-...+.-+ +..+...+++..|.+.++.+...- ..|...++..++.+.. +.+..+++.+..+.+....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 11222222 222333479999999998886542 3334555555665554 3465677777777664321
Q ss_pred --CcccHHHHHHHHHHHH--hcCChHHHHHHHHHH
Q 001637 467 --LVSNHVTYSSLIDGCC--KLGDMSAAESILQEM 497 (1039)
Q Consensus 467 --~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 497 (1039)
..|...+|..+++.++ ..|++..+.+.++++
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1345556777776554 567766666655444
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.78 E-value=1.1e+02 Score=35.54 Aligned_cols=246 Identities=15% Similarity=0.055 Sum_probs=123.8
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 001637 692 KQGNLEIAFKLWDEMRR-------NGIMPNSVTCNVLVGGLVGFG-----EIEKAMDVLNDMLVWGFSPTSTTIKILLDT 759 (1039)
Q Consensus 692 ~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 759 (1039)
...+.+.|+.+|+.+.+ .| .......+..+|.+.. +.+.|+.++.+.-..|.......+..+...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYET 337 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHc
Confidence 34455555555555544 33 2223344444554422 455566666666554433222211111111
Q ss_pred hhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001637 760 SSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCR----LGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSH 835 (1039)
Q Consensus 760 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 835 (1039)
-....+...|.+.+..+...|. +.....+..+|.. .-+...|..++++..++|. |....-...+..+.. +.
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-cc
Confidence 1112455677777777766552 2333333333332 2367788888888888762 221111222233434 67
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHH---Hc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----C
Q 001637 836 INKALATYTQMINEGVSPNTATYNILLGIF---LG----TGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKI----G 904 (1039)
Q Consensus 836 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g 904 (1039)
++.+...+..+.+.|..-....-..+.... .. ..+.+.+...+.+....| +......+.+.|..- .
T Consensus 413 ~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred ccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCC
Confidence 777777777777654333211111111111 11 224566667777766544 344445555554332 3
Q ss_pred CHHHHHHHHHHHHHCCCccChHHHHHHHHHHH----hcCCHHHHHHHHHHHHH
Q 001637 905 NKKESIQIYCEMITKGYVPKTSTYNVLIGDFA----KEGKMHQARELLKEMQA 953 (1039)
Q Consensus 905 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~ 953 (1039)
+.+.|...|......+ ......|...+. ... +..|..++++..+
T Consensus 490 d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASE 537 (552)
T ss_pred ChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHh
Confidence 4788888888877654 333334444332 223 6778888887776
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.68 E-value=35 Score=30.68 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=32.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 001637 832 VSSHINKALATYTQMINEGVSPNTA-TYNILLGIFLGTGSTKEVDDLFGEMKKR 884 (1039)
Q Consensus 832 ~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 884 (1039)
..++.+++..+++.|.- +.|+.. .-..-...+...|+|++|..+++.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 46677777777777766 666532 2222344566677777777777777653
No 332
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=81.68 E-value=72 Score=33.37 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHhhCCC
Q 001637 988 RAEAKKLFMEMNEKGFVPCESTQTCFSSTFARPG 1021 (1039)
Q Consensus 988 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~l~~~G 1021 (1039)
.++|..+|+++.+.|. ......++ ++++.|
T Consensus 207 ~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence 3556666666655553 22333344 444444
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.47 E-value=2.6 Score=24.78 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.9
Q ss_pred hHHHHHHHhhCCCChHHHHHHHH
Q 001637 1009 TQTCFSSTFARPGKKADAQRLLQ 1031 (1039)
Q Consensus 1009 ~~~~l~~~l~~~G~~~eA~~~~~ 1031 (1039)
....+++++...|+.++|++.++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34578999999999999999875
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.45 E-value=97 Score=33.46 Aligned_cols=65 Identities=9% Similarity=0.111 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMM---DTITYNALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
...+|..++.+..+.|.++-|...+.++...+... ++.....-+......|+..+|+..+++.++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777888888888888888888877643111 233333345556677888888888877776
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.29 E-value=19 Score=34.35 Aligned_cols=78 Identities=12% Similarity=-0.017 Sum_probs=49.1
Q ss_pred HhcCchHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHccCCHHH
Q 001637 657 LRHGKCEVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRR---NGIMPNSVTCNVLVGGLVGFGEIEK 733 (1039)
Q Consensus 657 ~~~g~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~ 733 (1039)
.+.|+.+|...|-++...+.--++.....|...|. ..+.++++.++....+ .+-.+|+..+..|+..+.+.|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44555566666666666554445555555555554 5667777777777665 2225567777777777777777776
Q ss_pred HH
Q 001637 734 AM 735 (1039)
Q Consensus 734 A~ 735 (1039)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 63
No 336
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.25 E-value=22 Score=36.10 Aligned_cols=98 Identities=14% Similarity=0.231 Sum_probs=64.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC--HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 001637 329 PNLITHTTLISAYCKQQALEEALGLYEEMVKY---GFLPD--VVTYSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVS 403 (1039)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 403 (1039)
-...+...++..-....+++++...+-+++.. -..|+ .++|..++ . .-+.++++.++..=+..|+-||..+
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll---l-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL---L-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH---H-ccChHHHHHHHhCcchhccccchhh
Confidence 34445555666666677888888887777653 11111 23333322 2 2356677777777778888888888
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 001637 404 YTTLIDSLFKAGCAMEAFALQSQMMVR 430 (1039)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (1039)
++.+++.+.+.+++.+|.++.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888877777666654
No 337
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.91 E-value=1.1e+02 Score=33.73 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 001637 788 YNSLITILCRLGMTRKATSVLEDMRGR 814 (1039)
Q Consensus 788 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 814 (1039)
-+.+++.+.+.|-..+|.+.+..+...
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~l 489 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQEL 489 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhC
Confidence 344555555666666666666666554
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.78 E-value=72 Score=31.63 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=28.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCcc----C-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 895 TLISGHAKIGNKKESIQIYCEMITKGYVP----K-------TSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 895 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
.|...|...|.+..-.++++++....-.. | ..+|..=+..|-...+-.+-..++++.+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 34445555555555555555554321000 0 12344445555555555555555555544
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.64 E-value=17 Score=34.57 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCChhHHHHHHHHHHcCCChHHH
Q 001637 801 TRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINE---GVSPNTATYNILLGIFLGTGSTKEV 874 (1039)
Q Consensus 801 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 874 (1039)
-++|.+.|-++...+.-.++.....+...| ...+.++|+.++.+.++. +-.+|+..+.+|++.+.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 355666666666655544555555554444 345666666666666542 2234555556666666666655554
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.39 E-value=44 Score=37.32 Aligned_cols=27 Identities=15% Similarity=-0.026 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001637 331 LITHTTLISAYCKQQALEEALGLYEEM 357 (1039)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (1039)
..-|..|.++..+.|++..|.+.|...
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 334555555555555555555555443
No 341
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.07 E-value=24 Score=35.81 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRG---IMM--DTITYNALMRGYWVSSHINKALATYTQMINEGVSPNTATYNIL 861 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 861 (1039)
+...++..-....+.++++..+-+++... ..| ..++|-.++.- -+.++++.++..=++.|+-||..++..+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchhhHHHH
Confidence 33444444455667777777776665431 011 12333333322 3667777777777777888888888888
Q ss_pred HHHHHcCCChHHHHHHHHHHHh
Q 001637 862 LGIFLGTGSTKEVDDLFGEMKK 883 (1039)
Q Consensus 862 ~~~~~~~g~~~~A~~~~~~~~~ 883 (1039)
++.+.+.|.+.+|..+-..|+.
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 8888888888777777666653
No 342
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.87 E-value=27 Score=28.70 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=24.1
Q ss_pred HhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001637 900 HAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARG 955 (1039)
Q Consensus 900 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 955 (1039)
+...|++++|..+.+.. ..||...|.+|. -.+.|..+++..-+.+|-.+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 44555555555555444 245555554442 224444444444444454444
No 343
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.70 E-value=5.8 Score=26.36 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 001637 242 GFNILIDGYCKSGDLSSALKLMEGMR 267 (1039)
Q Consensus 242 ~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (1039)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555556666666666666555554
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.17 E-value=5.4 Score=24.10 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 927 TYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 927 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
+|..++..|...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566666667777777777776665
No 345
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.12 E-value=62 Score=32.42 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=15.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 001637 931 LIGDFAKEGKMHQARELLKEMQ 952 (1039)
Q Consensus 931 l~~~~~~~g~~~~A~~~~~~~~ 952 (1039)
++..+.+.|++.+|+.+...++
T Consensus 131 li~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHH
Confidence 5677778888888877654433
No 346
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.85 E-value=48 Score=27.54 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001637 593 KEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLIN 654 (1039)
Q Consensus 593 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 654 (1039)
-+...-+..+....+.|++....+.+.+|.+.+++..|.++|+-+..+- ......|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 3556666677777788999999999999999999999999999887652 222225555543
No 347
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.62 E-value=1.8e+02 Score=34.20 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=27.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHc
Q 001637 476 SLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKK 519 (1039)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 519 (1039)
.+|-.|.++|++++|.++..+..+. .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4566778888888888888554433 333445666777777664
No 348
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.36 E-value=44 Score=27.39 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001637 591 KMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLI 653 (1039)
Q Consensus 591 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 653 (1039)
+.-+..+-+..+....+.|++....+.+++|.+.+++..|.++++-+..+- ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 344566666777777788999999999999999999999999999887542 22334555444
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.91 E-value=1.9e+02 Score=33.94 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHCCCCC---C--hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 001637 836 INKALATYTQMINEGVSP---N--TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESI 910 (1039)
Q Consensus 836 ~~~A~~~~~~~~~~~~~p---~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 910 (1039)
-++.+++|-+.-...+-| + .......+..|.+.|-++|-.-++.+|-+ .......++ .+.++.++|+
T Consensus 610 ~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn-----~k~AL~lII---~el~die~AI 681 (846)
T KOG2066|consen 610 HDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN-----AKEALKLII---NELRDIEKAI 681 (846)
T ss_pred hhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc-----hHHHHHHHH---HHhhCHHHHH
Confidence 355666666655443434 1 22233455666666767776666666631 112222333 3566777777
Q ss_pred HHHHHHHHCCCccChHHHHHHHHHHHhcCC
Q 001637 911 QIYCEMITKGYVPKTSTYNVLIGDFAKEGK 940 (1039)
Q Consensus 911 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 940 (1039)
++.++ .-|...|+.|+.-....-.
T Consensus 682 efvKe------q~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 682 EFVKE------QDDSELWEDLINYSLDKPE 705 (846)
T ss_pred HHHHh------cCCHHHHHHHHHHhhcCcH
Confidence 76654 3478888888876554433
No 350
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.28 E-value=1.2e+02 Score=31.59 Aligned_cols=146 Identities=18% Similarity=0.061 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcC-----C-
Q 001637 800 MTRKATSVLEDMRGRGIMMDTITYNALMRGYWV----SSHINKALATYTQMINEGVSPNTATYNILLGIFLGT-----G- 869 (1039)
Q Consensus 800 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g- 869 (1039)
+..+|..++....+.| .+.....|...|.. ..+..+|...|+++.+.|..+...+...+...+..- -
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 4566666666555554 22333334444433 336677777777777766544322233333333332 1
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcC-----
Q 001637 870 -STKEVDDLFGEMKKRGLKPDASTYDTLISGH----AKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEG----- 939 (1039)
Q Consensus 870 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----- 939 (1039)
....|...+.++...+ +......+...| .-..+.++|..+|++..+.|. ......+. .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchh
Confidence 2236777888777665 333333344443 223477888888888887654 33333333 444444
Q ss_pred ----------CHHHHHHHHHHHHHCC
Q 001637 940 ----------KMHQARELLKEMQARG 955 (1039)
Q Consensus 940 ----------~~~~A~~~~~~~~~~g 955 (1039)
+...|...+......|
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcC
Confidence 5555566666555544
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.86 E-value=1.1e+02 Score=30.98 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 001637 347 LEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFR 390 (1039)
Q Consensus 347 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 390 (1039)
..+|+++|..++.+. .-.++-+.++.++-...+..+|...+.
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHH
Confidence 467888888877652 124444555666666666666655544
No 352
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.83 E-value=2.5e+02 Score=35.02 Aligned_cols=125 Identities=10% Similarity=-0.009 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHhccCCHH-HHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 001637 889 DASTYDTLISGHAKIGNKK-ESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILI 967 (1039)
Q Consensus 889 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 967 (1039)
+...-...+.++...+..+ .+...+..+.+ .+|+.+-.+.+.++.+.|.-+.+...+..+++ .+|+.+-...+
T Consensus 755 ~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa 828 (897)
T PRK13800 755 NREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAA 828 (897)
T ss_pred CHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHH
Confidence 3333333444444444322 12333444432 34455555555555555554433333444443 33443333333
Q ss_pred HHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhCCCChHHHHHHHHHHhh
Q 001637 968 GGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSSTFARPGKKADAQRLLQEFYK 1035 (1039)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~l~~~G~~~eA~~~~~~~~~ 1035 (1039)
.++...+. .++...+.++++ .|+..+-...+.+|.+.+.-.++...+.++++
T Consensus 829 ~aL~~l~~-------------~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 829 RALAGAAA-------------DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhccc-------------cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 34333322 233344444432 24444555555555554222345555544443
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.54 E-value=5.2 Score=27.26 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHhhccC
Q 001637 1011 TCFSSTFARPGKKADAQRLLQEFYKSND 1038 (1039)
Q Consensus 1011 ~~l~~~l~~~G~~~eA~~~~~~~~~~~~ 1038 (1039)
..++.+|...|+.+.|+++++.++..++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 3678888888999999999997776543
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.42 E-value=1.6e+02 Score=31.78 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHH
Q 001637 855 TATYNILLGIFLGTGSTKEVDDLFGEMKK---RGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVL 931 (1039)
Q Consensus 855 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 931 (1039)
..++..+..++..+|+.+.|.+++++++= ....|....+ .. -...|+. ++ .-...-|...|-++
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~---~~-~~~~g~~--------rL-~~~~~eNR~fflal 106 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF---RS-NLTSGNC--------RL-DYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh---hc-ccccCcc--------cc-CCccccchHHHHHH
Confidence 55666667777778888888777777751 1111110000 00 0011110 00 00001133334333
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhC-----
Q 001637 932 ---IGDFAKEGKMHQARELLKEMQARGRNP--NSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEK----- 1001 (1039)
Q Consensus 932 ---~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----- 1001 (1039)
+..+.+.|-+.-|.++.+-++. +.| |+......|+.|+-.++. ++-..++.+.....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLls--Ldp~~DP~g~ll~ID~~ALrs~~-----------y~~Li~~~~~~~~~~~~~~ 173 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLS--LDPDEDPLGVLLFIDYYALRSRQ-----------YQWLIDFSESPLAKCYRNW 173 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh--cCCCCCcchhHHHHHHHHHhcCC-----------HHHHHHHHHhHhhhhhhhh
Confidence 4577899999999999999999 777 676666777766644332 22233333333221
Q ss_pred -CCCCChhhHHHHHHHhhCCCCh---------------HHHHHHHHHH
Q 001637 1002 -GFVPCESTQTCFSSTFARPGKK---------------ADAQRLLQEF 1033 (1039)
Q Consensus 1002 -~~~p~~~~~~~l~~~l~~~G~~---------------~eA~~~~~~~ 1033 (1039)
..-|+. ....+-++++.|+. ++|.+.+.++
T Consensus 174 ~~~lPn~--a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 174 LSLLPNF--AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred hhhCccH--HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHH
Confidence 113433 23455566677777 8899888843
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.58 E-value=1.1e+02 Score=29.58 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=41.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 897 ISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 897 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
++.+.+.++.++|+...++-++ -+| |...-..|+..|+-.|+|++|..-++-.-+ +.|+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~ 67 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQ 67 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcc
Confidence 4455567778888877777666 355 555666677778888888888877777776 6664
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.11 E-value=24 Score=39.05 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=64.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001637 762 KSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALA 841 (1039)
Q Consensus 762 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 841 (1039)
..|+...|...+..+..............|.++..+.|...+|..++.+..... ...+.++.+++++|....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555544432111122234457777778888888888888877664 3467788888888888899999999
Q ss_pred HHHHHHHCCCCCC-hhHHHHHHH
Q 001637 842 TYTQMINEGVSPN-TATYNILLG 863 (1039)
Q Consensus 842 ~~~~~~~~~~~p~-~~~~~~l~~ 863 (1039)
.|++..+ ..|+ .+.-+.|..
T Consensus 698 ~~~~a~~--~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 698 AFRQALK--LTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHh--cCCCChhhHHHHHH
Confidence 9998887 5564 444444443
No 357
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.54 E-value=15 Score=26.28 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 001637 930 VLIGDFAKEGKMHQARELLKEMQARGRNPNSST 962 (1039)
Q Consensus 930 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 962 (1039)
.+.-++.+.|++++|.+..+.+++ ++|+..-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 455577888888888888888888 7887643
No 358
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.53 E-value=69 Score=28.29 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCcc--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 887 KPDASTYDTLISGHAKIGN---KKESIQIYCEMITKGYVP--KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 887 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
.++..+--.+.+++.+..+ +.+.+.+++++.+. -.| +-.....|.-++.+.++|++++.+.+.+++ .+||+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 4555555566666666654 45677888888752 233 233444455677788888888888888888 67765
No 359
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.34 E-value=2.1e+02 Score=33.39 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 001637 472 VTYSSLIDGCCKLGDMSAAESILQ 495 (1039)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~ 495 (1039)
.-|. .+..+.-.|.++.|.+++.
T Consensus 150 ~FW~-~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 150 DFWD-YVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHH-HHHHHHHTT-HHHHHHHH-
T ss_pred hHHH-HHHHHHHcCCHHHHHHHHH
Confidence 3444 4555666677777776664
No 360
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.00 E-value=95 Score=30.52 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001637 927 TYNVLIGDFAKEGKMHQARELLKEMQAR 954 (1039)
Q Consensus 927 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 954 (1039)
....++..+.+.|+.++|.+.|.+++..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444556666777777777777777764
No 361
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.88 E-value=87 Score=27.69 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=46.3
Q ss_pred CCChhHHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccC
Q 001637 852 SPNTATYNILLGIFLGTGS---TKEVDDLFGEMKKRGLKPDA--STYDTLISGHAKIGNKKESIQIYCEMITKGYVPK 924 (1039)
Q Consensus 852 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 924 (1039)
.++..+-..+..++.+..+ ..+++.++++..+.. .|+. ...--|.-++.+.|+++.+.++++.+++ .+||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCC
Confidence 5666666667777776555 566778888888622 2322 2222233456699999999999999887 5553
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.40 E-value=17 Score=28.45 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=26.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-C-hhHHHHHHHHHHcCCChHHHHHH
Q 001637 832 VSSHINKALATYTQMINEGVSP-N-TATYNILLGIFLGTGSTKEVDDL 877 (1039)
Q Consensus 832 ~~~~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~ 877 (1039)
...+.++|+..|++.++.-..| + -.++.+++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777666532222 2 34555666666777766666554
No 363
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=66.88 E-value=1.6e+02 Score=30.42 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCc-h-HHHHHHHHHHhcCCCCC----HhH
Q 001637 613 NYTSLMDGFFKVGKETAALNIAQEMTEK----NIPFDVTAYNVLINGLLRHGK-C-EVQSVYSGMKEMGLTPD----LAT 682 (1039)
Q Consensus 613 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~-~-~a~~~~~~~~~~~~~p~----~~~ 682 (1039)
.+.....-|++.|+-+.|++.+++..++ |...|+..+..-+..+....+ . +-.+..+.+.+.|...+ ..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4445556777777777777776655443 444444444333333222222 2 55666666666665443 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001637 683 YNIMISASCKQGNLEIAFKLWDEMR 707 (1039)
Q Consensus 683 ~~~l~~~~~~~g~~~~A~~~~~~m~ 707 (1039)
|..+- |..-.++.+|-.+|-+..
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 44432 344567777777776654
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=66.75 E-value=2.8e+02 Score=33.18 Aligned_cols=355 Identities=12% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HccCCHHHHHHHHH
Q 001637 665 QSVYSGMKEMGLTPD-LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGL----VGFGEIEKAMDVLN 739 (1039)
Q Consensus 665 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~ 739 (1039)
.+.+..-...+..|+ ..........+...|..++|++.--... |......++.-+ ...+++.--....+
T Consensus 331 aeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~------d~~~aa~lle~~~~~L~~~~~lsll~~~~~ 404 (894)
T COG2909 331 AEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAG------DPEMAADLLEQLEWQLFNGSELSLLLAWLK 404 (894)
T ss_pred HHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCC------CHHHHHHHHHhhhhhhhcccchHHHHHHHH
Q ss_pred HHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHH-------HHHHHHH-HHHhcCChHHHHHHHHHH
Q 001637 740 DMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQA-------YYNSLIT-ILCRLGMTRKATSVLEDM 811 (1039)
Q Consensus 740 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~A~~~~~~~ 811 (1039)
.+-..-...++..............+++++..+.+++...-..|+.. .++.|-. +....|+.++|.++-+..
T Consensus 405 ~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~a 484 (894)
T COG2909 405 ALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLA 484 (894)
T ss_pred hCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q ss_pred HhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhHHHHHHHHHHcCC--ChHHHHHHHHH
Q 001637 812 RGR----GIMMDTITYNALMRGYWVSSHINKALATYTQMINE----GVSP-NTATYNILLGIFLGTG--STKEVDDLFGE 880 (1039)
Q Consensus 812 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 880 (1039)
... -..+..+.+..+..+..-.|++++|+.+..+..+. ++.+ ...+...-...+..+| .+.+.+..+..
T Consensus 485 l~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 485 LVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHh--CCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 001637 881 MKK--RGLKPD-----ASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYN--VLIGDFAKEGKMHQARELLKEM 951 (1039)
Q Consensus 881 ~~~--~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 951 (1039)
... .+-.|- ......+-.-+.-.+.-.+|...++-.......|-...+. .|+..+...|+.++|.....++
T Consensus 565 ~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 565 IREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q ss_pred HHCCCCC----ChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChh---hHHHHHHHhhCCCChH
Q 001637 952 QARGRNP----NSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCES---TQTCFSSTFARPGKKA 1024 (1039)
Q Consensus 952 ~~~g~~p----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~l~~~G~~~ 1024 (1039)
......+ +..+...++....+. .+|+.+++.....+-...+..-..- .+..+...-...|...
T Consensus 645 ~~l~~~~~~~~~~~a~~~~v~~~lwl----------~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~ 714 (894)
T COG2909 645 ERLLLNGQYHVDYLAAAYKVKLILWL----------AQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILL 714 (894)
T ss_pred HHHhcCCCCCchHHHHHHHhhHHHhc----------ccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhh
Q ss_pred HHHHHHHHHhh
Q 001637 1025 DAQRLLQEFYK 1035 (1039)
Q Consensus 1025 eA~~~~~~~~~ 1035 (1039)
||+..+..+.+
T Consensus 715 eae~al~~l~~ 725 (894)
T COG2909 715 EAELALDELAS 725 (894)
T ss_pred HHHHHHHHHhh
No 365
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.71 E-value=4.7 Score=41.26 Aligned_cols=92 Identities=17% Similarity=0.079 Sum_probs=62.7
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChH-HHHHHHHHHHhcCCHHHH
Q 001637 866 LGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTS-TYNVLIGDFAKEGKMHQA 944 (1039)
Q Consensus 866 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A 944 (1039)
...|.+++|++.+...++.+ ++....|..-..++.+.++...|++-+...++ +.||.. -|-.-..+-.-.|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 34778888888888887743 44556666666677788888888888887776 666542 233233344456888888
Q ss_pred HHHHHHHHHCCCCCCh
Q 001637 945 RELLKEMQARGRNPNS 960 (1039)
Q Consensus 945 ~~~~~~~~~~g~~p~~ 960 (1039)
...+....+.++.+..
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 8888888886655543
No 366
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.28 E-value=1.3e+02 Score=34.72 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=59.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 001637 830 YWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGS-TKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKE 908 (1039)
Q Consensus 830 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 908 (1039)
|...+..+.|.+.|++..+ +.|...+=..+...+...|+ ++...++-.-- -.|-..+++.|.++.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~Ig------------mkLn~LlgrKG~lek 362 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQIG------------MKLNSLLGRKGALEK 362 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHHHH------------HHHHHHhhccchHHH
Confidence 4455667888899998887 77865444444444444444 33332222111 123344668888876
Q ss_pred HHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 909 SIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 909 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
-.++++-. +| ..+-.-..++.+|+...+.|.+ ++|..
T Consensus 363 lq~YWdV~----------~y---~~asVLAnd~~kaiqAae~mfK--Lk~P~ 399 (1226)
T KOG4279|consen 363 LQEYWDVA----------TY---FEASVLANDYQKAIQAAEMMFK--LKPPV 399 (1226)
T ss_pred HHHHHhHH----------Hh---hhhhhhccCHHHHHHHHHHHhc--cCCce
Confidence 66666433 22 1122235689999999999998 66643
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=66.19 E-value=9.4 Score=22.38 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 001637 929 NVLIGDFAKEGKMHQARELLK 949 (1039)
Q Consensus 929 ~~l~~~~~~~g~~~~A~~~~~ 949 (1039)
..+...+...|++++|...++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555556666666655543
No 368
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.13 E-value=2.1e+02 Score=31.00 Aligned_cols=29 Identities=17% Similarity=0.128 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMR 812 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 812 (1039)
.+.+.-.+..++...|+.+.|.+++++..
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56667777777777787777777777654
No 369
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.03 E-value=2.8e+02 Score=32.44 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC
Q 001637 138 VFTINVLVHSFCKVGNLSFALDFLRNV 164 (1039)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 164 (1039)
...|+ .+..+.-.|.++.|..+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45666 677778889999999988554
No 370
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=64.74 E-value=43 Score=27.48 Aligned_cols=38 Identities=5% Similarity=0.065 Sum_probs=15.8
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHH
Q 001637 844 TQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEM 881 (1039)
Q Consensus 844 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 881 (1039)
+.+....+.|++....+.+.+|.+.+++.-|..+++-+
T Consensus 31 N~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 31 NNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333334444444444444444444444444444433
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.72 E-value=3.3e+02 Score=33.17 Aligned_cols=59 Identities=24% Similarity=0.229 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---HHHHHHH---HHHhcCChhhHHHHHHHHHh
Q 001637 334 HTTLISAYCKQQALEEALGLYEEMVKYGFLPDVV---TYSSIMG---GLCKCGRLAEAKMLFREMEK 394 (1039)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~li~---~~~~~g~~~~A~~~~~~m~~ 394 (1039)
+..=+..+.+..++++|..+-+..... .|... .+..+.. -+...|++++|++.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~--~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSP--NPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCC--ChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 555667777777888888877665542 12221 1222222 24568899999999988764
No 372
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.65 E-value=91 Score=35.92 Aligned_cols=105 Identities=14% Similarity=0.204 Sum_probs=55.2
Q ss_pred ccCCHHHHHHHHHHHHHCC--CccChH-----HHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 001637 902 KIGNKKESIQIYCEMITKG--YVPKTS-----TYNVLI--GDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCE 972 (1039)
Q Consensus 902 ~~g~~~~A~~~~~~~~~~~--~~p~~~-----~~~~l~--~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 972 (1039)
+-|+-++|+...-.++++. ..||.. +|--+. +.|...+..+.|++.|+++-+ +.|....-.++...+.-
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 4466666666666665531 334432 122211 345566777889999999988 78864332222222222
Q ss_pred cCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhCCCChHHHHHHHH
Q 001637 973 LSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQTCFSSTFARPGKKADAQRLLQ 1031 (1039)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~l~~~G~~~eA~~~~~ 1031 (1039)
.|.|-+ --.+|..-| ..+...|+|.|.++.-.+||+
T Consensus 333 aG~~Fe---------------ns~Elq~Ig--------mkLn~LlgrKG~leklq~YWd 368 (1226)
T KOG4279|consen 333 AGEHFE---------------NSLELQQIG--------MKLNSLLGRKGALEKLQEYWD 368 (1226)
T ss_pred hhhhcc---------------chHHHHHHH--------HHHHHHhhccchHHHHHHHHh
Confidence 232211 011121112 245566777787777777776
No 373
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.62 E-value=1.7e+02 Score=35.86 Aligned_cols=131 Identities=14% Similarity=0.085 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----h
Q 001637 891 STYDTLISGHAKIGNKKESIQIYCEMITKGYVPK----TSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSS----T 962 (1039)
Q Consensus 891 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~ 962 (1039)
..|...+..+-+.+-.+++.++-.++++. .+|+ +.+++.+.+-....|.|.+|.+..- -.||.. +
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~------~npdserrrdc 1056 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL------RNPDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH------cCCcHHHHHHH
Confidence 45677788888888899999888888874 4443 3456667777777888887765532 256644 4
Q ss_pred HHHHHHHHhhcCCCchhhHHHhHhHHHHHHH-HHHHHHhCCCCCChhhHHHHHHHhh-CCCChHHHHHH
Q 001637 963 YDILIGGWCELSNEPELDRTLILSYRAEAKK-LFMEMNEKGFVPCESTQTCFSSTFA-RPGKKADAQRL 1029 (1039)
Q Consensus 963 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~l~~~l~-~~G~~~eA~~~ 1029 (1039)
...|+..+++.|+.+.+-..-=.|..++... ++++.... .+-...+|+.+.-++. +++++-+|--+
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHH
Confidence 5566667777776654433211244455555 44444332 3333445555544443 56666666543
No 374
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.16 E-value=2e+02 Score=35.37 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh-----------------------CCCCCC-----HHHHHHHHHHHHhcCChHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRG-----------------------RGIMMD-----TITYNALMRGYWVSSHINK 838 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~-----~~~~~~l~~~~~~~~~~~~ 838 (1039)
....++.+|..+|...+|+..|.+... .|-.|. ..-|...++.+-+++..|.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 344556668888888888888876532 121222 2235667788888899999
Q ss_pred HHHHHHHHHHCCCCC---C-hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHH--
Q 001637 839 ALATYTQMINEGVSP---N-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDA----STYDTLISGHAKIGNKKE-- 908 (1039)
Q Consensus 839 A~~~~~~~~~~~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~-- 908 (1039)
+.++-..+++. +.| + ..+++++..-....|.+.+|.+.+-+ .||. .+...++-.++.+|.++.
T Consensus 1002 vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~ 1074 (1480)
T KOG4521|consen 1002 VCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALA 1074 (1480)
T ss_pred HHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHh
Confidence 99988888874 333 2 45677788888889999888776543 3443 355667777888887643
Q ss_pred ----------HHH-HHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 909 ----------SIQ-IYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKE 950 (1039)
Q Consensus 909 ----------A~~-~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 950 (1039)
-.. ++++.-.. ..- ....|+.|..-+...++|.+|-.+.-+
T Consensus 1075 ~fpfigl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1075 TFPFIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred hCCccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 333 33333221 111 334555555556677899888776443
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.76 E-value=68 Score=26.51 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=15.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001637 329 PNLITHTTLISAYCKQQALEEALGLYEEMVKYG 361 (1039)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 361 (1039)
||...|-+|... +.|..+++..-+..|...|
T Consensus 68 pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 68 PDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred chHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 555555444332 4555555555555554443
No 376
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.41 E-value=2.4e+02 Score=31.23 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 001637 435 DVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIIN 514 (1039)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 514 (1039)
|.....+++..+.......-.+.+-.+|...| .+...|..++.+|... .-+.-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566677777777777777777777777654 3455677777777777 456667777777766554 4444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 001637 515 GYVKKGMLDEAANVMRKMKSQ 535 (1039)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~ 535 (1039)
-|-+ ++.+.+...|.+...+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 4444 7777777777776654
No 377
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.16 E-value=1.3e+02 Score=29.66 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=39.9
Q ss_pred hhccCChhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChH
Q 001637 760 SSKSRRGDVILQMHERLVDMGVRLNQ-AYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTI-TYNALMRGYWVSSHIN 837 (1039)
Q Consensus 760 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 837 (1039)
|...+.++.|+..|.+.+.. .|+. ..|..-+.++.+..+|+.+..--.+..+ +.|+.+ .-.-+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 44445555666655555553 4443 3334445555555555555554444443 233332 2222333444444555
Q ss_pred HHHHHHHHH
Q 001637 838 KALATYTQM 846 (1039)
Q Consensus 838 ~A~~~~~~~ 846 (1039)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 555555554
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.01 E-value=19 Score=28.11 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=29.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCcc-C-hHHHHHHHHHHHhcCCHHHHHHHH
Q 001637 902 KIGNKKESIQIYCEMITKGYVP-K-TSTYNVLIGDFAKEGKMHQARELL 948 (1039)
Q Consensus 902 ~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~ 948 (1039)
...+.++|+..+++++++-..| + -.+...|+.+|...|++++++...
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777653332 1 234555666777777777766653
No 379
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.90 E-value=1.9e+02 Score=29.91 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCccChHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC
Q 001637 891 STYDTLISGHAKIGNKKESIQIYCEMITK----GYVPKTSTYNV-LIGDFAKEGKMHQARELLKEMQARG 955 (1039)
Q Consensus 891 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g 955 (1039)
..+.....-||+.|+.+.|++.+.+..++ |.+-|...+-. |+-.|..+.-..+-++..+.+.++|
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 34444555677777777777666655443 33334333222 2233444444455555555555544
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.50 E-value=29 Score=38.41 Aligned_cols=84 Identities=12% Similarity=0.184 Sum_probs=45.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 001637 832 VSSHINKALATYTQMINEGVSP--NTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKES 909 (1039)
Q Consensus 832 ~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 909 (1039)
..|+...|...+..... ..| ..+....|...+.+.|...+|-.++.+.+... .....++-.++.++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 44556666666655554 333 23444555555556666666666665555432 22233444555555555666666
Q ss_pred HHHHHHHHH
Q 001637 910 IQIYCEMIT 918 (1039)
Q Consensus 910 ~~~~~~~~~ 918 (1039)
++.|+++.+
T Consensus 696 ~~~~~~a~~ 704 (886)
T KOG4507|consen 696 LEAFRQALK 704 (886)
T ss_pred HHHHHHHHh
Confidence 666666655
No 381
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=60.35 E-value=2e+02 Score=29.96 Aligned_cols=120 Identities=12% Similarity=0.080 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHcCCChH
Q 001637 800 MTRKATSVLEDMRGRGIMMDTITYNALMRGYWV------SSHINKALATYTQMINEGVSPNT-ATYNILLGIFLGTGSTK 872 (1039)
Q Consensus 800 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 872 (1039)
-++++..++++....+. |.+....+.|.++.. ..+|..-..+|+-+.. +.|++ +++|--+ +..+..-.+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHH
Confidence 46778888888777654 788777777766532 2457777778887777 55653 3444332 333333345
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccCh
Q 001637 873 EVDDLFGEMKKRG-LKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKT 925 (1039)
Q Consensus 873 ~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 925 (1039)
.++.+.+-+.+.+ +.--...+..-.+.+.+.|+.++|...|++.+. +.++.
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~ 398 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA--LARNA 398 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCCh
Confidence 5555555554421 111122234556667777888888888877776 44443
No 382
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.35 E-value=2.5e+02 Score=34.13 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 001637 369 YSSIMGGLCKCGRLAEAKMLFREMEK 394 (1039)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~m~~ 394 (1039)
|..|+..|...|+.++|++++.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55556666666666666666665554
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.35 E-value=15 Score=21.85 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=7.0
Q ss_pred HHHhcCChHHHHHHHHHH
Q 001637 829 GYWVSSHINKALATYTQM 846 (1039)
Q Consensus 829 ~~~~~~~~~~A~~~~~~~ 846 (1039)
.+...+++++|...|++.
T Consensus 10 ~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 10 AYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 333333444444443333
No 384
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.06 E-value=2.5e+02 Score=30.21 Aligned_cols=158 Identities=14% Similarity=0.109 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------CCCCC
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMM---DTITYNALMRGYWVSSHINKALATYTQMINE---------GVSPN 854 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~p~ 854 (1039)
.+.-+.+-|..+|+++.|++.+.+.+.. +.. -...|-.+|..-...|+|.....+-.+.... .+.+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 5566788889999999999999886543 111 2334555555555566666666555555432 12333
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHh-CC-----CCC-CHHHHHHHHHHHhccCCHHHHH-----HHHHHHHHCCCc
Q 001637 855 TATYNILLGIFLGTGSTKEVDDLFGEMKK-RG-----LKP-DASTYDTLISGHAKIGNKKESI-----QIYCEMITKGYV 922 (1039)
Q Consensus 855 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~p-~~~~~~~l~~~~~~~g~~~~A~-----~~~~~~~~~~~~ 922 (1039)
...+..+...+ .+++..|.+.|-...- .. +.| |..+|..+ -++.-.++-+--+ ..|+...+
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL-cALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL-CALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhh-HhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 44444444443 3477777666654431 11 122 34445322 2333333322222 22333322
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001637 923 PKTSTYNVLIGDFAKEGKMHQARELLKEMQAR 954 (1039)
Q Consensus 923 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 954 (1039)
-.+..+..+..-| .+++..++++++++...
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 2455566565555 45888888888887664
No 385
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.86 E-value=2.1e+02 Score=29.33 Aligned_cols=111 Identities=12% Similarity=0.060 Sum_probs=66.6
Q ss_pred hHHHHHHHHhCC----CCCCcccHHHHHHHHHh-cC-chhHHHHHHHHHHH-CCCCcCchhHHHHHHHHHhcCchhhHHH
Q 001637 154 LSFALDFLRNVD----IDVDNVTYNTVIWGLCE-QG-LANQGFGLLSIMVK-NGISVDSFSCNILVKGFCRIGMVKYGEW 226 (1039)
Q Consensus 154 ~~~A~~~~~~~~----~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 226 (1039)
+.+|+.+|+... +-.|...-..+++.... .+ ....--++...+.. .|-.++..+...++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 456777776321 22344444445554443 22 11122223333332 2346677777788888888888887777
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001637 227 VMDNLVNG-GVCRDVIGFNILIDGYCKSGDLSSALKLME 264 (1039)
Q Consensus 227 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 264 (1039)
+.+..... ++..|...|..+|..-.+.|+..-...+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77766554 566778888888888888888766655544
No 386
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.42 E-value=68 Score=30.96 Aligned_cols=74 Identities=8% Similarity=0.016 Sum_probs=42.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 001637 476 SLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQN--IMPNVFIFAALIDG 550 (1039)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~ 550 (1039)
.-+..+.+.+.+.+|+...++-.+..+. |...-..+++.||-.|++++|..-++-.-... ..+....|..+|.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3344555666677777766666655444 55666667777777777777766655544321 22233455555543
No 387
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=59.10 E-value=1.1e+02 Score=25.64 Aligned_cols=59 Identities=8% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001637 663 EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLV 722 (1039)
Q Consensus 663 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 722 (1039)
+..+-+..+....+-|++.+..+.+.+|.+.+++..|+++|+.+..+- .+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 667777777777888999999999999999999999999998887531 22222555554
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.90 E-value=21 Score=24.41 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=9.6
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 001637 862 LGIFLGTGSTKEVDDLFGEMK 882 (1039)
Q Consensus 862 ~~~~~~~g~~~~A~~~~~~~~ 882 (1039)
..+|...|+.+.|.+++++++
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 389
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.84 E-value=2.3e+02 Score=28.91 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCch
Q 001637 924 KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPE 978 (1039)
Q Consensus 924 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 978 (1039)
|+.....++..|.+.|++.+|+.-|-.- -.|+...+..++..|...+...+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcc
Confidence 4555555666666666666665443211 12333333334555555444443
No 390
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.37 E-value=2.3e+02 Score=28.73 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCChh-HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH---
Q 001637 819 DTITYNALMRGYWVSSHINKALATYTQMIN----EGVSPNTA-TYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDA--- 890 (1039)
Q Consensus 819 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--- 890 (1039)
....|..+...|++.++.+.+.+...+..+ .|.+.|.. +-..+.-.|....-+++-++..+.|.+.|-.-+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345666677777777777777666665443 24444422 1122333344444466666677777665543322
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 891 -STYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 891 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
.+|..+-- ....++.+|-.++-+.+.
T Consensus 194 yK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFK--MMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHhc
Confidence 22322221 123456666666655543
No 391
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=56.21 E-value=2.6e+02 Score=29.25 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=45.4
Q ss_pred HcCCChHHHHHHHHHHHh---CCCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHHHH-----CCCccCh-HHHHHHHHH
Q 001637 866 LGTGSTKEVDDLFGEMKK---RGLKPDASTY--DTLISGHAKIGNKKESIQIYCEMIT-----KGYVPKT-STYNVLIGD 934 (1039)
Q Consensus 866 ~~~g~~~~A~~~~~~~~~---~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~-~~~~~l~~~ 934 (1039)
-+.++.++|.++++++.+ .--.|+.+.| ..++..+...|+..++.+.+++..+ .+++|+. ..|+.+..-
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq 165 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ 165 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence 344466677776666653 2234555544 3444555567777777777776665 3555543 345555543
Q ss_pred H-HhcCCHHHHHHHH
Q 001637 935 F-AKEGKMHQARELL 948 (1039)
Q Consensus 935 ~-~~~g~~~~A~~~~ 948 (1039)
| ...|++.....-.
T Consensus 166 Yyk~~~d~a~yYr~~ 180 (380)
T KOG2908|consen 166 YYKKIGDFASYYRHA 180 (380)
T ss_pred HHHHHHhHHHHHHHH
Confidence 3 3445655544433
No 392
>PRK12798 chemotaxis protein; Reviewed
Probab=56.11 E-value=3e+02 Score=29.93 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=96.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHcCCCh
Q 001637 797 RLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYW-VSSHINKALATYTQMINEGVSPN----TATYNILLGIFLGTGST 871 (1039)
Q Consensus 797 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~ 871 (1039)
-.|+-.+|.+.+..+.....++....+-.|+.+-. ...+..+|+++|+...- .-|- ...+..-+-.....|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 35888888888888776656666777777776643 44568888888888766 5564 33444445566778888
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHCCCccC--hHHHHHHHHHHHhcCCHHHHHHH
Q 001637 872 KEVDDLFGEMKK-RGLKPDASTY-DTLISGHAKIGNKKESIQIYCEMITKGYVPK--TSTYNVLIGDFAKEGKMHQAREL 947 (1039)
Q Consensus 872 ~~A~~~~~~~~~-~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 947 (1039)
+++..+-.+-.. +...|-...+ ..++..+.+.++-. -.+-+.+++.. ++|+ ...|-.+...-.-.|+.+-|.-.
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 888776665553 4444443333 23333444443222 11224455543 4553 35666666777778888888888
Q ss_pred HHHHHHC
Q 001637 948 LKEMQAR 954 (1039)
Q Consensus 948 ~~~~~~~ 954 (1039)
-++++..
T Consensus 280 s~~A~~L 286 (421)
T PRK12798 280 SERALKL 286 (421)
T ss_pred HHHHHHh
Confidence 8888774
No 393
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.02 E-value=30 Score=29.50 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHhh
Q 001637 1010 QTCFSSTFARPGKKADAQRLLQEFYK 1035 (1039)
Q Consensus 1010 ~~~l~~~l~~~G~~~eA~~~~~~~~~ 1035 (1039)
|..+++.+...|..++|.++|.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55667777777777777777775544
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.09 E-value=33 Score=33.21 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001637 907 KESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNP 958 (1039)
Q Consensus 907 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 958 (1039)
+...+..++.++ ..|++.+|..++..+...|+.++|....+++.. +.|
T Consensus 128 ~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 344455566665 678888888888888889999999988888888 777
No 395
>PF13934 ELYS: Nuclear pore complex assembly
Probab=55.00 E-value=88 Score=31.11 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=10.2
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 001637 108 KLIYHFNASGLVSQVWIVYTH 128 (1039)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~ 128 (1039)
.++.++...|+...|+.++..
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHh
Confidence 344444445555555544444
No 396
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.07 E-value=1.6e+02 Score=29.90 Aligned_cols=87 Identities=8% Similarity=0.064 Sum_probs=45.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH-----
Q 001637 548 IDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFF----- 622 (1039)
Q Consensus 548 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 622 (1039)
|.+++..++|.+++...-+--+..-+....+...-|-.|.+.+....+.++-..-+...-.-+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455555666665555444333333333344455555556666666666666555555322223334555555443
Q ss_pred hcCCHHHHHHHH
Q 001637 623 KVGKETAALNIA 634 (1039)
Q Consensus 623 ~~g~~~~A~~~~ 634 (1039)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777776665
No 397
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.91 E-value=1.2e+02 Score=29.52 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=26.3
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 866 LGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 866 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
.+.|+.+-|.+++.++.+. .+-....|..+...--+.|+++.|.+.|++.++
T Consensus 6 ~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 3445555555555555542 112334455555555555555555555555555
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.24 E-value=1.4e+02 Score=30.31 Aligned_cols=85 Identities=8% Similarity=0.086 Sum_probs=39.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----
Q 001637 827 MRGYWVSSHINKALATYTQMINE--GVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGH---- 900 (1039)
Q Consensus 827 ~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---- 900 (1039)
|++++..+++.+++...-+..+. .++|... ..=|-.|++.|......++-.......-.-+...|.+++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 55666666666665544443321 2333222 222223556666666655555555422122223354444433
Q ss_pred -hccCCHHHHHHHH
Q 001637 901 -AKIGNKKESIQIY 913 (1039)
Q Consensus 901 -~~~g~~~~A~~~~ 913 (1039)
.=.|.++||+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 3346666666555
No 399
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.16 E-value=3.1e+02 Score=29.17 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHH---cCCHHHHHHHH
Q 001637 453 SEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVK---KGMLDEAANVM 529 (1039)
Q Consensus 453 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 529 (1039)
+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.++++....+. +...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44455666666664 355556667777777777777777778887776444 66777777766554 22355555555
Q ss_pred HHHH
Q 001637 530 RKMK 533 (1039)
Q Consensus 530 ~~~~ 533 (1039)
.+..
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 4443
No 400
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=53.11 E-value=2.3e+02 Score=29.60 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHCCCccChHHHHHHHHHHH------hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCch
Q 001637 905 NKKESIQIYCEMITKGYVPKTSTYNVLIGDFA------KEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPE 978 (1039)
Q Consensus 905 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 978 (1039)
-++++..++++....+ .|-+....+.|.++. ..-+|..-..+|+-+.. +.|++++--+=.-+..+...
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~G--- 344 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREG--- 344 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhh---
Confidence 3567777777777654 366655555554332 23478888888888888 77876532211112221100
Q ss_pred hhHHHhHhHHHHHHHHHHHHHhCCCCCChhhH-HHHHHHhhCCCChHHHHHHHHHHhh
Q 001637 979 LDRTLILSYRAEAKKLFMEMNEKGFVPCESTQ-TCFSSTFARPGKKADAQRLLQEFYK 1035 (1039)
Q Consensus 979 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~l~~~G~~~eA~~~~~~~~~ 1035 (1039)
-+-+..+.+-+.+.+--.+...| ..-++.|.+.|+.+||..-+++.+.
T Consensus 345 ---------p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 345 ---------PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred ---------HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 24466667666554221222222 2347889999999999999986543
No 401
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.24 E-value=5.9e+02 Score=31.89 Aligned_cols=155 Identities=9% Similarity=0.007 Sum_probs=76.5
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHHCCCCCChhHHHH
Q 001637 782 RLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHIN-KALATYTQMINEGVSPNTATYNI 860 (1039)
Q Consensus 782 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~p~~~~~~~ 860 (1039)
.+|..+....+..+.+.+..+. +..... .++...-.....++...+..+ .+...+.++.. .+|...-..
T Consensus 725 D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~a 794 (897)
T PRK13800 725 DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAA 794 (897)
T ss_pred CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHH
Confidence 3455555555555555443221 122222 234444444555555555432 23444444443 345555556
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCC
Q 001637 861 LLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGK 940 (1039)
Q Consensus 861 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 940 (1039)
.+.++...|..+.+...+..+++ .++...-...+.++.+.+. +++...+..+++ +|+..+-...+.++.+.+.
T Consensus 795 A~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~ 867 (897)
T PRK13800 795 ALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPG 867 (897)
T ss_pred HHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCC
Confidence 66666666665544444444443 2344444445556666654 356666666654 4555555555555555432
Q ss_pred HHHHHHHHHHHHH
Q 001637 941 MHQARELLKEMQA 953 (1039)
Q Consensus 941 ~~~A~~~~~~~~~ 953 (1039)
-..+...+..+++
T Consensus 868 ~~~a~~~L~~al~ 880 (897)
T PRK13800 868 DPAARDALTTALT 880 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 3455555555554
No 402
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.22 E-value=18 Score=37.32 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=47.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHH
Q 001637 798 LGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDD 876 (1039)
Q Consensus 798 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 876 (1039)
.|.+++|++.|...++.+ ++....|..-.+.+.+.++...|+.-++..++ +.|| ..-|-.-..+-...|.|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 345556666665555541 22333444444455555666666666655555 5554 2334444444455566666666
Q ss_pred HHHHHHhCCCCCCH
Q 001637 877 LFGEMKKRGLKPDA 890 (1039)
Q Consensus 877 ~~~~~~~~~~~p~~ 890 (1039)
.+..+.+.++.+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 66666655444433
No 403
>PRK10941 hypothetical protein; Provisional
Probab=51.16 E-value=1.1e+02 Score=31.36 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=52.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 894 DTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 894 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
+.+-.+|.+.++++.|++..+.++. +.| ++.-+.--+-.|.+.|.+..|..-++..++ ..|+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~--~~P~d 248 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE--QCPED 248 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--hCCCc
Confidence 4566678899999999999999998 778 566677788889999999999999999988 45643
No 404
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.21 E-value=92 Score=25.59 Aligned_cols=56 Identities=16% Similarity=0.020 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 001637 907 KESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYD 964 (1039)
Q Consensus 907 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 964 (1039)
++-++.++++..++...-+.....|.-.|.+.|+-+.|..-|+.=.. +.|.+.+|-
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fm 109 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFM 109 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHH
Confidence 34456666766665544566677788889999999999999988777 788777763
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=49.11 E-value=37 Score=36.91 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=69.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH-HHHHHHcCCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC
Q 001637 827 MRGYWVSSHINKALATYTQMINEGVSPNTATYNI-LLGIFLGTGSTKEVDDLFGEMKKRGLKPDA-STYDTLISGHAKIG 904 (1039)
Q Consensus 827 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 904 (1039)
+.-+...++++.|+.+|.++++ +.|+...|.. -..++.+.+.+..|+.=..++++.. |+- ..|---+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 3445566788999999999988 7887555543 3477888888888888888877633 432 33433344556677
Q ss_pred CHHHHHHHHHHHHHCCCccChHHHHHHHHHH
Q 001637 905 NKKESIQIYCEMITKGYVPKTSTYNVLIGDF 935 (1039)
Q Consensus 905 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 935 (1039)
++.+|...|+.... +.|+-....-++.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 78888888888776 677665555554443
No 406
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=48.84 E-value=28 Score=37.86 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=57.7
Q ss_pred HHHhhccCChhHHHHHHHHHHHcCCCccHHHHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 001637 757 LDTSSKSRRGDVILQMHERLVDMGVRLNQAYYN-SLITILCRLGMTRKATSVLEDMRGRGIMMD-TITYNALMRGYWVSS 834 (1039)
Q Consensus 757 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 834 (1039)
+....+.+.++.|...+.++++. .|+.+.|. .-..++.+.+++..|+.=+.+.++.. |. ...|.--..++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 34445556677777777777774 55444333 23356667777777777666666542 22 223333334455555
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 001637 835 HINKALATYTQMINEGVSPNTATYNILLGIF 865 (1039)
Q Consensus 835 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 865 (1039)
++.+|+..|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 66666666666655 666655555444433
No 407
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.34 E-value=1.1e+02 Score=25.75 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhH
Q 001637 255 DLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITH 334 (1039)
Q Consensus 255 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1039)
..++|..+.+.+...+.. ..++--..+..+...|+|++|+.. .. ....||...|
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~--~~-----------------------~~~~pdL~p~ 74 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLL--PQ-----------------------CHCYPDLEPW 74 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHH--HT-----------------------TS--GGGHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHh--cc-----------------------cCCCccHHHH
Confidence 456677777776665431 222223334556778888888221 11 1234677666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001637 335 TTLISAYCKQQALEEALGLYEEMVKYG 361 (1039)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~~g 361 (1039)
-+|-. .|.|.-+++...+.++...|
T Consensus 75 ~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 75 AALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 55543 37777777777777666554
No 408
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=47.96 E-value=5.2e+02 Score=30.34 Aligned_cols=225 Identities=12% Similarity=0.094 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHH--HHHH
Q 001637 787 YYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYN-ALMRGYWVSSHINKALATYTQMINEGVSPNTATYN--ILLG 863 (1039)
Q Consensus 787 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~ 863 (1039)
....|.-.++..|+- ..+++....+..- .+++.+. .|.-+....|- .-.++|+++.+.-...+.++-. .+.-
T Consensus 399 alyAlGLIhA~hG~~--~~~yL~~~Lk~~~-~e~v~hG~cLGlGLa~mGS--a~~eiYe~lKevLy~D~AvsGEAAgi~M 473 (929)
T KOG2062|consen 399 ALYALGLIHANHGRG--ITDYLLQQLKTAE-NEVVRHGACLGLGLAGMGS--ANEEIYEKLKEVLYNDSAVSGEAAGIAM 473 (929)
T ss_pred hhhhhhccccCcCcc--HHHHHHHHHHhcc-chhhhhhhhhhccchhccc--ccHHHHHHHHHHHhccchhhhhHHHHhh
Confidence 444555555555544 6666665554322 2333333 23333333333 2234566555421122222211 1222
Q ss_pred HHHcCCCh-HHHHH-HHHHHHhCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHCCCccC--hHHHHHHHHHHHh
Q 001637 864 IFLGTGST-KEVDD-LFGEMKKRGLKPDASTYD--TLISGHAKIGNKKESIQIYCEMITKGYVPK--TSTYNVLIGDFAK 937 (1039)
Q Consensus 864 ~~~~~g~~-~~A~~-~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 937 (1039)
.+...|.+ .+|.+ ++....+...+ .+.. .+.-++.-.|+-++|..+.++|.... +|- ..-..++..+|+-
T Consensus 474 Gl~mlGt~~~eaiedm~~Ya~ETQHe---ki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~G 549 (929)
T KOG2062|consen 474 GLLMLGTANQEAIEDMLTYAQETQHE---KIIRGLAVGIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVG 549 (929)
T ss_pred hhHhhCcCcHHHHHHHHHHhhhhhHH---HHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhc
Confidence 33444443 23332 33333332111 1111 23334566788889999999998642 331 1122345567888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChh--hHHHHHH
Q 001637 938 EGKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCES--TQTCFSS 1015 (1039)
Q Consensus 938 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~ 1015 (1039)
.|+..-...++.-++.. ..-|.--+....-++.-.++. +....+. +++...++|--. +...+|-
T Consensus 550 Tgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp------------~~~~s~V-~lLses~N~HVRyGaA~ALGI 615 (929)
T KOG2062|consen 550 TGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP------------EQLPSTV-SLLSESYNPHVRYGAAMALGI 615 (929)
T ss_pred cCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh------------hhchHHH-HHHhhhcChhhhhhHHHHHhh
Confidence 88876666665554441 122222222222222222221 2222222 232334555544 2335566
Q ss_pred HhhCCCChHHHHHHHHHHhh
Q 001637 1016 TFARPGKKADAQRLLQEFYK 1035 (1039)
Q Consensus 1016 ~l~~~G~~~eA~~~~~~~~~ 1035 (1039)
++.-+|. .||+.+++.+-+
T Consensus 616 aCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 616 ACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhcCCCc-HHHHHHHhhhhc
Confidence 6677776 788888886644
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.27 E-value=2.5e+02 Score=28.16 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHh---CCCCCChhhHHHHHHH-----hhCCCChHHHHHHHHHHhh
Q 001637 988 RAEAKKLFMEMNE---KGFVPCESTQTCFSST-----FARPGKKADAQRLLQEFYK 1035 (1039)
Q Consensus 988 ~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~-----l~~~G~~~eA~~~~~~~~~ 1035 (1039)
.++|.+.|+++.+ ...+|.++++-.++-- +--.|+.++|.++.++..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666532 2266777766554322 2368999999999986543
No 410
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.19 E-value=3.8e+02 Score=28.49 Aligned_cols=80 Identities=11% Similarity=-0.044 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 001637 487 MSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFK---AGKQEVAFDL 563 (1039)
Q Consensus 487 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~ 563 (1039)
.+.-+.+++++++.++. +...+..++..+.+....++..+.++++.... +-+...|...|+.... .-.++...++
T Consensus 47 ~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 34566788888877654 77888889999999999999999999998863 3367777777765543 2346666666
Q ss_pred HHHHH
Q 001637 564 YNDLK 568 (1039)
Q Consensus 564 ~~~~~ 568 (1039)
|.+..
T Consensus 125 y~~~l 129 (321)
T PF08424_consen 125 YEKCL 129 (321)
T ss_pred HHHHH
Confidence 66544
No 411
>PRK10941 hypothetical protein; Provisional
Probab=46.69 E-value=1.8e+02 Score=29.75 Aligned_cols=60 Identities=13% Similarity=-0.039 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 788 YNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 788 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
.+.|-.+|.+.++++.|+.+.+.+... .+.|+.-+.--+-.|.+.|.+..|+.-++..++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l-~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF-DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344444555555555555555555553 122344444444445555555555555555544
No 412
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.62 E-value=3.1e+02 Score=27.28 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=47.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCcc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 896 LISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 896 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
+-.++...|++-++++.-.+++. ..| |...|.--..+.+..-+.++|..-|.++++ +.|.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~--~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldps 296 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILR--HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPS 296 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChh
Confidence 34456677888899999999887 455 677787777777777789999999999998 6664
No 413
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=45.94 E-value=2.1e+02 Score=29.95 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=54.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC---CCccChHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCC-hhhHHH
Q 001637 897 ISGHAKIGNKKESIQIYCEMITK---GYVPKTSTYN--VLIGDFAKEGKMHQARELLKEMQA-----RGRNPN-SSTYDI 965 (1039)
Q Consensus 897 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~-~~~~~~ 965 (1039)
+....+.++.++|++++++++++ .-.|++..|- ..+..+...||..++.+.+.+..+ -|++|+ ...|+.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 33455677999999999998864 2235665543 355778889999999999888777 477774 345666
Q ss_pred HHHHHhh
Q 001637 966 LIGGWCE 972 (1039)
Q Consensus 966 l~~~~~~ 972 (1039)
+.+-|.+
T Consensus 162 lssqYyk 168 (380)
T KOG2908|consen 162 LSSQYYK 168 (380)
T ss_pred HHHHHHH
Confidence 6665554
No 414
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=44.82 E-value=98 Score=22.25 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=14.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001637 827 MRGYWVSSHINKALATYTQMINEGVSPN 854 (1039)
Q Consensus 827 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 854 (1039)
.-++.+.|++++|+...+.+++ +.|+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~ 33 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPD 33 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 3455566666666666666666 5554
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.65 E-value=1.2e+02 Score=25.10 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=12.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHH
Q 001637 861 LLGIFLGTGSTKEVDDLFGEMK 882 (1039)
Q Consensus 861 l~~~~~~~g~~~~A~~~~~~~~ 882 (1039)
+.......|.+++|.+.+++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344455566666666665555
No 416
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.13 E-value=3.3e+02 Score=29.73 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=32.3
Q ss_pred HhccCCHHHHHHHHHHHHHCCCccChH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 001637 900 HAKIGNKKESIQIYCEMITKGYVPKTS--TYNVLIGDFA--KEGKMHQARELLKEMQA 953 (1039)
Q Consensus 900 ~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 953 (1039)
+.+.+++..|.++++++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34667777777777777765 444333 4444545554 34467777777777665
No 417
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.13 E-value=6e+02 Score=29.92 Aligned_cols=255 Identities=12% Similarity=0.064 Sum_probs=125.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcC
Q 001637 586 LKRHGKMKEANGLVVDMMSRGLVPDRVNY----TSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAY-NVLINGLLRHG 660 (1039)
Q Consensus 586 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g 660 (1039)
..+.|+..+|.+++...+-..-.+ ...| ..+.-++...|.-+...+.+.+..+..- .++..+ ..|.-+++..|
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~-~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAE-NEVVRHGACLGLGLAGMG 444 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhcc-chhhhhhhhhhccchhcc
Confidence 346788888888887776431111 1111 1122233344444446666666555431 222222 23333344444
Q ss_pred chHHHHHHHHHHhcCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHH--HHHHHHHHccCCHHHHH
Q 001637 661 KCEVQSVYSGMKEMGLTPDLATYN--IMISASCKQGNLEIAFKLWDEMRRNGIMPN-SVTC--NVLVGGLVGFGEIEKAM 735 (1039)
Q Consensus 661 ~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~--~~l~~~~~~~g~~~~A~ 735 (1039)
.. -.++++.+.+.-..-+.++-. .+.-++.-.|.+. .+.+++|........ ..+. ..+.-++...|+-++|-
T Consensus 445 Sa-~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad 521 (929)
T KOG2062|consen 445 SA-NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDAD 521 (929)
T ss_pred cc-cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhH
Confidence 33 234444443321121222221 1222333334332 234445543211111 1111 12233456678888999
Q ss_pred HHHHHHHhCCCCCCh--HhHHHHHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001637 736 DVLNDMLVWGFSPTS--TTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRG 813 (1039)
Q Consensus 736 ~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 813 (1039)
.++++|.... .|-. .-...+..+|+..|+.....+++...+.- ...|+.-+-.+.-.+.-..+.+....+.+-+.+
T Consensus 522 ~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 522 PLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE 599 (929)
T ss_pred HHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhchHHHHHHhh
Confidence 9999997532 2211 13345566788888887777777765542 223333333444455566677777777776665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 001637 814 RGIMMDTITYNALMRGYWVSSH-INKALATYTQMIN 848 (1039)
Q Consensus 814 ~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~ 848 (1039)
. ..|.+..=.++.-+.+-.|- ..+|+.+++-|..
T Consensus 600 s-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 600 S-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred h-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 4 34443333333333333333 5778888888876
No 418
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.93 E-value=81 Score=30.81 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=15.0
Q ss_pred CccChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 921 YVPKTSTYNVLIGDFAKEGKMHQARELLKE 950 (1039)
Q Consensus 921 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 950 (1039)
+.++..-+|.|+--|..+..+.+|.+.|.+
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~ 51 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK 51 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc
Confidence 344444555555555555555555444443
No 419
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.60 E-value=30 Score=30.34 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=17.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 001637 252 KSGDLSSALKLMEGMRREGVIPDIVSYNTLIS 283 (1039)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~ 283 (1039)
+.|.-.+|..+|.+|++.|-+||. |+.|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 345555666666666666666653 455544
No 420
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.55 E-value=72 Score=23.84 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 001637 931 LIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 931 l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
++.+|...|++++|.++.+++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555666666555555543
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.38 E-value=26 Score=30.70 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=21.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 001637 116 SGLVSQVWIVYTHMISCGVLPNVFTINVLVHS 147 (1039)
Q Consensus 116 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 147 (1039)
.|.-..|-.+|..|+.+|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 35666778888888888877775 6777654
No 422
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.93 E-value=4.7e+02 Score=28.31 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001637 71 FCTLIQLYLTCGRFAKASDTFFTMRNFN--IIPVLPLWNKLIYHFNASGLVSQVWIVYTHMIS 131 (1039)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 131 (1039)
...+...|..||+++.|++.+.+++..- .+..+-.|-.+|..-.-.|++.++...-.+..+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 5566778888888888888888865421 111233354555555555666666555555543
No 423
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.71 E-value=6.8e+02 Score=30.16 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 001637 370 SSIMGGLCKCGRLAEAKMLFREMEKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKA 449 (1039)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 449 (1039)
.++|..+.+.|-.+-|+...+ |..+- ......+|+.+.|++.-.+.- |..+|..|+....+.
T Consensus 624 qaiIaYLqKkgypeiAL~FVk---------D~~tR---F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVK---------DERTR---FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeec---------Ccchh---eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHh
Confidence 446666677777777776543 22221 123456788888877655543 677888999888889
Q ss_pred CChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 001637 450 GRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEK 500 (1039)
Q Consensus 450 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 500 (1039)
|+.+-|+..|++... |..|--.|.-.|+.++-.++......+
T Consensus 686 gn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r 727 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR 727 (1202)
T ss_pred cchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh
Confidence 999988888887764 333444566677777776666655443
No 424
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=42.15 E-value=4.1e+02 Score=27.39 Aligned_cols=108 Identities=8% Similarity=0.086 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHH-cC-CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001637 487 MSAAESILQEMEE-KHVVPNVITYSSIINGYVK-KG-MLDEAANVMRKMKS-QNIMPNVFIFAALIDGYFKAGKQEVAFD 562 (1039)
Q Consensus 487 ~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~ 562 (1039)
+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..++..++|.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455565552211 1122355555555555444 11 12222222222222 2234555666666677777777777666
Q ss_pred HHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHH
Q 001637 563 LYNDLKLV-GMEENNYILDIFVNYLKRHGKMKE 594 (1039)
Q Consensus 563 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 594 (1039)
+++..... +...|...|..++......|+..-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 66655433 333444445555555555555433
No 425
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.70 E-value=4.8e+02 Score=27.58 Aligned_cols=80 Identities=16% Similarity=0.018 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHhCC-C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 001637 221 VKYGEWVMDNLVNGG-V---CRDVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKS 296 (1039)
Q Consensus 221 ~~~A~~~~~~~~~~~-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 296 (1039)
.+.|.+.|...+..+ . ..++.....+.....+.|..++-..+++.... .++..-...++.+++...+.+.-.+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 567777888777642 1 23555556666677777776665555555544 2356667788888888888887778
Q ss_pred HHHHHHh
Q 001637 297 LIDEVLG 303 (1039)
Q Consensus 297 ~~~~~~~ 303 (1039)
+++.++.
T Consensus 223 ~l~~~l~ 229 (324)
T PF11838_consen 223 LLDLLLS 229 (324)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 8887775
No 426
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=39.68 E-value=5.5e+02 Score=28.23 Aligned_cols=87 Identities=10% Similarity=0.024 Sum_probs=43.9
Q ss_pred HHcCChhHHHHHHHHHHHCCCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHH
Q 001637 447 FKAGRPSEAEDTFNLILKHNLVSNHVTYSSLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAA 526 (1039)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 526 (1039)
...|+++.+...+....+. +.....+...++...-+.|++++|...-+.|+...+. +...........-..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3445555555544433221 1223334555555555666666666666666655544 4443333333334445566666
Q ss_pred HHHHHHHhC
Q 001637 527 NVMRKMKSQ 535 (1039)
Q Consensus 527 ~~~~~~~~~ 535 (1039)
..++++...
T Consensus 412 ~~wk~~~~~ 420 (831)
T PRK15180 412 HYWKRVLLL 420 (831)
T ss_pred HHHHHHhcc
Confidence 666665544
No 427
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.46 E-value=2.2e+02 Score=24.33 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 001637 243 FNILIDGYCKSGDLSSALKLMEGMRR 268 (1039)
Q Consensus 243 ~~~li~~~~~~g~~~~A~~~~~~m~~ 268 (1039)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 89999999999999999999998877
No 428
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.42 E-value=4.6e+02 Score=27.21 Aligned_cols=211 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHhhccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001637 756 LLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSH 835 (1039)
Q Consensus 756 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 835 (1039)
+....-+..+...-++....+++.+ +.....|..|.. ....-+.+|+++|++..+.+.. .|.++.+
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN-~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~-----------~yr~sqq 255 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEIN-NECATAYVLLAE--EEATTIVDAERLFKQALKAGET-----------IYRQSQQ 255 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcC-chhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHH-----------HHhhHHH
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001637 836 INKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKK-RGLKPDASTYDTLISGHAKIGNKKESIQIYC 914 (1039)
Q Consensus 836 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 914 (1039)
...--...+.+.+.+...-...=..|.-+-.+.|++.||.+.++.+.+ ..+..-..+...++.++....-+.+...++-
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H----------------------HHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 001637 915 E----------------------MITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCE 972 (1039)
Q Consensus 915 ~----------------------~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 972 (1039)
+ ++...+.||...-..|..+= ..|.+...++.+ +.|...-|-.-...+.-
T Consensus 336 kYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE------~~AvEAihRAvE--FNPHVPkYLLE~kslIl 407 (556)
T KOG3807|consen 336 KYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAE------INAVEAIHRAVE--FNPHVPKYLLEMKSLIL 407 (556)
T ss_pred hhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHH------HHHHHHHHHHhh--cCCCCcHHHHHHHhccC
Q ss_pred cCCCchhhHHHhHhHHHHHHHH
Q 001637 973 LSNEPELDRTLILSYRAEAKKL 994 (1039)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~a~~~ 994 (1039)
- .+.+++.|+ .||..+
T Consensus 408 P-----PEHiLKRGD-SEAlAY 423 (556)
T KOG3807|consen 408 P-----PEHILKRGD-SEAIAY 423 (556)
T ss_pred C-----HHHHhhccc-HHHHHH
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.91 E-value=72 Score=23.85 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=17.7
Q ss_pred CHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 001637 365 DVVTYSSIMGGLCKCGRLAEAKMLFREMEK 394 (1039)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 394 (1039)
|-.-.-.+|.+|...|++++|.+...++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444445566666777777777666666543
No 430
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.80 E-value=6.4e+02 Score=28.73 Aligned_cols=92 Identities=18% Similarity=0.148 Sum_probs=52.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCCChhhH
Q 001637 933 GDFAKEGKMHQARELLKEMQARGRNP--NSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVPCESTQ 1010 (1039)
Q Consensus 933 ~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 1010 (1039)
..+.+.|-|.-|.+..+-+++ +.| ||.....+|.-|+-..+ +..+| .+-.+..+.+......|+...-
T Consensus 350 ~~l~~RGC~rTA~E~cKllls--Ldp~eDPl~~l~~ID~~ALrar--eYqwi------I~~~~~~e~~n~l~~~PN~~yS 419 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLS--LDPSEDPLGILYLIDIYALRAR--EYQWI------IELSNEPENMNKLSQLPNFGYS 419 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCcCCchhHHHHHHHHHHHHH--hHHHH------HHHHHHHHhhccHhhcCCchHH
Confidence 456788999999999999999 777 68887788877763321 11111 1222222223222334665544
Q ss_pred HHHHHHhhCCCC---hHHHHHHHHHHh
Q 001637 1011 TCFSSTFARPGK---KADAQRLLQEFY 1034 (1039)
Q Consensus 1011 ~~l~~~l~~~G~---~~eA~~~~~~~~ 1034 (1039)
..++..+.+... .+.|.-.+.+++
T Consensus 420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 420 LALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 566666666444 344544444443
No 431
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.27 E-value=2.4e+02 Score=28.00 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC--hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 001637 818 MDTITYNALMRGYWVSSHINKALATYTQMINEGVS-PN--TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYD 894 (1039)
Q Consensus 818 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 894 (1039)
+|.+..+.++..+ ..|+++.|+++.+-+++.|+. |+ ..++-+++ .|+..+.-....+.|.+.+.....
T Consensus 82 qd~Vl~~~mvW~~-D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~ag~~~e~~~~~ 152 (230)
T PHA02537 82 QDDVLMTVMVWRF-DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASAGESVEPYFLR 152 (230)
T ss_pred CCCeeeEeeeeee-eccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHcCCCCChHHHH
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCccChHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHCCCCCChhh
Q 001637 895 TLISGHAKIGNKKESIQIYCEMITKGYVPKTSTYNVLIGDF---------AKEGKMHQARELLKEMQARGRNPNSST 962 (1039)
Q Consensus 895 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~g~~p~~~~ 962 (1039)
.+...-....-.++...-+-++ ++..+ ...++.+.|+.+++++.+ +.|..-+
T Consensus 153 ~~~~l~~~~dmpd~vrAKl~K~--------------~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~--l~~k~GV 213 (230)
T PHA02537 153 VFLDLTTEWDMPDEVRAKLYKA--------------AGYLLLRNEKGEPIGDAETLQLALALLQRAFQ--LNDKCGV 213 (230)
T ss_pred HHHHHHhcCCCChHHHHHHHHH--------------HHHHHhhcccCCCccCcccHHHHHHHHHHHHH--hCCCCCh
No 432
>PRK11619 lytic murein transglycosylase; Provisional
Probab=37.64 E-value=7.7e+02 Score=29.32 Aligned_cols=448 Identities=9% Similarity=0.035 Sum_probs=190.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHH
Q 001637 481 CCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFI-FAALIDGYFKAGKQEV 559 (1039)
Q Consensus 481 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~ 559 (1039)
..+.|++..+.++...+...... ....|..|...+. ....++....+++-. -.|-... -..-+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL~-~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPLY-PYLEYRQLTQDLM-NQPAVQVTNFIRANP---TLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCcH-hHHHHHHHHhccc-cCCHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHccCHHH
Confidence 34567788777777766433221 2233333322221 223444444333321 1122222 2223344456667766
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHH--HHHHHHH
Q 001637 560 AFDLYNDLKLVGMEENNYILDIFVNYLKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAA--LNIAQEM 637 (1039)
Q Consensus 560 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~ 637 (1039)
.+..+. ..+.+...-.....+....|+.++|......+-..|. ..+.....++..+.+.|.+... ..-++.+
T Consensus 118 ~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 665221 1234444445566667777887777776666655432 2345666677777666654332 2223333
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHh---------cCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 001637 638 TEKNIPFDVTAYNVLINGLLRHGKCEVQSVYSGMKE---------MGLTPDLATYNIMISASC--KQGNLEIAFKLWDEM 706 (1039)
Q Consensus 638 ~~~~~~~~~~~~~~l~~~~~~~g~~~a~~~~~~~~~---------~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~m 706 (1039)
...+ +...-..+...+..... ...+.+..+.. ....|+...-..++-++. ...+.+.|...+...
T Consensus 192 l~~~---~~~lA~~l~~~l~~~~~-~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~ 267 (644)
T PRK11619 192 MKAG---NTGLVTYLAKQLPADYQ-TIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSL 267 (644)
T ss_pred HHCC---CHHHHHHHHHhcChhHH-HHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3333 33333333332211000 00011111111 001112111111111111 233446666666655
Q ss_pred HH-cCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHhhccCChhHHHHHHHHHHHcCCCc
Q 001637 707 RR-NGIMPN--SVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRL 783 (1039)
Q Consensus 707 ~~-~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 783 (1039)
.. .++.+. ...+..++......+...+|...+....... .+......-+......++++.+...+..+-... ..
T Consensus 268 ~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~ 344 (644)
T PRK11619 268 VRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KE 344 (644)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-cc
Confidence 43 222222 1223333333333322445555555433211 122223333333345666666555555542211 11
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHH-HHHHCCCCCChhHHHHH
Q 001637 784 NQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHI-NKALATYT-QMINEGVSPNTATYNIL 861 (1039)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~-~~~~~~~~p~~~~~~~l 861 (1039)
...-..=++.++...|+.++|...|+++... . +|..++.+ .+.|.. .-...... .... + +. ..-..-
T Consensus 345 ~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~--~-~~-~~~~~r 413 (644)
T PRK11619 345 KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVAA-QRLGEEYPLKIDKAPKPDSA--L-TQ-GPEMAR 413 (644)
T ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHHH-HHcCCCCCCCCCCCCchhhh--h-cc-ChHHHH
Confidence 2233333555555566777776666665321 1 22222211 111110 00000000 0000 0 00 011122
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-Cc-cChHHHHHHHHHHHhcC
Q 001637 862 LGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKG-YV-PKTSTYNVLIGDFAKEG 939 (1039)
Q Consensus 862 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~-p~~~~~~~l~~~~~~~g 939 (1039)
+..+...|+..+|...+..+.+. .+......+.....+.|..+.++.........+ +. --+..|...+..+.+.-
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~ 490 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGK 490 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHc
Confidence 34566778888888888887763 233444555555667788777776554332200 00 00123444555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCh
Q 001637 940 KMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 940 ~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
.++.++-..---.++++.|+.
T Consensus 491 ~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 491 GIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred CCCHHHHHHHHHHhcCCCCCC
Confidence 566666554455566666653
No 433
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.52 E-value=3.2e+02 Score=28.55 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=41.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCC-cc--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 895 TLISGHAKIGNKKESIQIYCEMITKGY-VP--KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 895 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
-=+.-|.+..++..|...|.+.++... .| +.+.|+.-..+-.-.|++..|+.-..+++. ++|+.
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h 152 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTH 152 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcch
Confidence 334456677777777777777665422 23 345566665555566777777777777777 67765
No 434
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.90 E-value=92 Score=27.37 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCCCChh-hHHHHHHHhhCCCChHHHHHHHH
Q 001637 989 AEAKKLFMEMNEKGFVPCES-TQTCFSSTFARPGKKADAQRLLQ 1031 (1039)
Q Consensus 989 ~~a~~~~~~~~~~~~~p~~~-~~~~l~~~l~~~G~~~eA~~~~~ 1031 (1039)
.+..++|.-|..+|+-.... -|...+..|-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45778899998888766655 56678888999999999999886
No 435
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.79 E-value=6.3e+02 Score=28.05 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=23.1
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001637 510 SSIINGYVK---KGMLDEAANVMRKMKSQNIMPNVFIFAALIDGY 551 (1039)
Q Consensus 510 ~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 551 (1039)
..++.++.+ .++.+.|+..+..|.+.|..|....-..++.++
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334444443 356677777777777766655544444444443
No 436
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.65 E-value=4.2e+02 Score=28.97 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=40.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH--HhcCChHHHHHHHHHHHHC
Q 001637 792 ITILCRLGMTRKATSVLEDMRGRGIMMDTI--TYNALMRGY--WVSSHINKALATYTQMINE 849 (1039)
Q Consensus 792 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~A~~~~~~~~~~ 849 (1039)
+.-+...+++..|.++|+.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556889999999999999886 555443 444454554 4456688999999887763
No 437
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.98 E-value=4.6e+02 Score=25.94 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=27.4
Q ss_pred ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001637 922 VPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNS 960 (1039)
Q Consensus 922 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 960 (1039)
.|.+.....++..+. .+++++|.+++.++.+.|+.|..
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 456666666666554 45888888888888888888854
No 438
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.57 E-value=6.7e+02 Score=27.75 Aligned_cols=195 Identities=13% Similarity=0.096 Sum_probs=99.6
Q ss_pred HHHcCChhHHHHHHHHhHhCCCCCCHhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCC
Q 001637 78 YLTCGRFAKASDTFFTMRNFNIIPVLPL--WNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVF--TINVLVHSFCKVGN 153 (1039)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~ 153 (1039)
.++.|..+-+..++ +.|..|+... ..+.+...+..|+.+-+ +.+++.|..|+.. ...+.+...++.|+
T Consensus 9 A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34556655444333 4454444322 23455566677776543 4445566655532 12334555677888
Q ss_pred hHHHHHHHHhCCCCC---CcccHHHHHHHHHhcCchhHHHHHHHHHHHCCCCcCchh--HHHHHHHHHhcCchhhHHHHH
Q 001637 154 LSFALDFLRNVDIDV---DNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFS--CNILVKGFCRIGMVKYGEWVM 228 (1039)
Q Consensus 154 ~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 228 (1039)
.+....+++.-.... +...++.+.. .+..|.. ++.+.+++.|..++... ..+.+...+..|+.+....+.
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~-A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTPLHL-ATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCHHHH-HHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 887766665432111 1122333333 3344554 45566667776665422 334566666788876655554
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHccCCHHHH
Q 001637 229 DNLVNGGVCRD---VIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSY---NTLISGFCKRGDFVKA 294 (1039)
Q Consensus 229 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~---~~li~~~~~~g~~~~A 294 (1039)
+ .|...+ ..-++.| ...+..|+.+ +.+.+.+.|..++...- .+.+...+..|+.+-+
T Consensus 156 ~----~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv 218 (413)
T PHA02875 156 D----HKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV 218 (413)
T ss_pred h----cCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH
Confidence 4 343322 2233333 3445556654 44455667777765431 2444444556665443
No 439
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.26 E-value=2.9e+02 Score=23.43 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=20.8
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 863 GIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 863 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
..+...|+|++| +..-. ....||...|.+|-.. +.|-.+++...+.++..
T Consensus 48 ~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 48 SSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred HHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 344455555555 11111 1134555555444332 55555555555555433
No 440
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.20 E-value=6.6e+02 Score=27.51 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=34.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 001637 790 SLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEG 850 (1039)
Q Consensus 790 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 850 (1039)
.|+.-|...|+..+|.++++++--- .-...+.+.+++.+..+.++-..-+.+++.....|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3555677777777777777665321 11235566666666666666555555555554433
No 441
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.17 E-value=2e+02 Score=23.73 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=9.5
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 001637 900 HAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 900 ~~~~g~~~~A~~~~~~~~~ 918 (1039)
....|+.++|.+.+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3444555555555555443
No 442
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=32.83 E-value=3.8e+02 Score=24.35 Aligned_cols=81 Identities=6% Similarity=0.049 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCC-----CCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhhHH
Q 001637 69 YFFCTLIQLYLTCGRFAKASDTFFTMRNFNI-----IPVLPLWNKLIYHFNASGL-VSQVWIVYTHMISCGVLPNVFTIN 142 (1039)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~ 142 (1039)
.+++.++.-....+++...+++.+.+..... .-+-..|+.++++.+++.. --.+..+|.-+.+.+...+..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4667777777777888888887777643221 0123346666666655554 334555666666555556666666
Q ss_pred HHHHHHH
Q 001637 143 VLVHSFC 149 (1039)
Q Consensus 143 ~li~~~~ 149 (1039)
.++.++.
T Consensus 120 ~li~~~l 126 (145)
T PF13762_consen 120 CLIKAAL 126 (145)
T ss_pred HHHHHHH
Confidence 6665533
No 443
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.59 E-value=7.6e+02 Score=27.48 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=92.3
Q ss_pred HcCCChHHHHHHHHHHHh-CCCCCCH--H-----HHHHHHHH-HhccCCHHHHHHHHHHHHHCCCccChH--HHHHHHHH
Q 001637 866 LGTGSTKEVDDLFGEMKK-RGLKPDA--S-----TYDTLISG-HAKIGNKKESIQIYCEMITKGYVPKTS--TYNVLIGD 934 (1039)
Q Consensus 866 ~~~g~~~~A~~~~~~~~~-~~~~p~~--~-----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~ 934 (1039)
.-.|++.+|++-...|.+ ..-.|.. . ....++.. ++..|.++.|+.-|..+.+..-.-|.. .-..+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 358999999999999986 2234442 1 11233333 445688999999998887642222332 22335567
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHH--------HHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCCCCC
Q 001637 935 FAKEGKMHQARELLKEMQARGRNPN-SSTYDI--------LIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKGFVP 1005 (1039)
Q Consensus 935 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 1005 (1039)
|.+.|+-++-.++.+. +.|+ ..++.. +++++. .++++.+.||...+++-++.....
T Consensus 414 YL~~~~~ed~y~~ld~-----i~p~nt~s~ssq~l~a~~~~v~glf----------af~qn~lnEaK~~l~e~Lkmanae 478 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDL-----IGPLNTNSLSSQRLEASILYVYGLF----------AFKQNDLNEAKRFLRETLKMANAE 478 (629)
T ss_pred HHHhccHHHHHHHHHh-----cCCCCCCcchHHHHHHHHHHHHHHH----------HHHhccHHHHHHHHHHHHhhcchh
Confidence 8888776655444443 3332 222211 111111 235567889999988876543222
Q ss_pred Chh-----hHHHHHHHhhCCCChHHHHHHHH----HHhhccCC
Q 001637 1006 CES-----TQTCFSSTFARPGKKADAQRLLQ----EFYKSNDI 1039 (1039)
Q Consensus 1006 ~~~-----~~~~l~~~l~~~G~~~eA~~~~~----~~~~~~~~ 1039 (1039)
|.- ...-++.++...|+..|+++.+. -..|.|||
T Consensus 479 d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 479 DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 211 22245677778999999998876 33555554
No 444
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.22 E-value=3.1e+02 Score=24.02 Aligned_cols=47 Identities=13% Similarity=0.290 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001637 663 EVQSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRN 709 (1039)
Q Consensus 663 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 709 (1039)
+..+-+..+....+-|++.+...-+.+|.+-+++..|+++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 67777778888888899999999999999999999999999888753
No 445
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.14 E-value=1.1e+02 Score=18.33 Aligned_cols=13 Identities=0% Similarity=0.189 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHHh
Q 001637 221 VKYGEWVMDNLVN 233 (1039)
Q Consensus 221 ~~~A~~~~~~~~~ 233 (1039)
.+.|+.+|++++.
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 446
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.92 E-value=1.2e+03 Score=29.25 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHHh
Q 001637 243 FNILIDGYCKSG--DLSSALKLMEGMRR 268 (1039)
Q Consensus 243 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 268 (1039)
...++.+|++.+ ++++|+.+..++.+
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 455566666666 56666666666654
No 447
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.87 E-value=7.5e+02 Score=26.83 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=50.6
Q ss_pred HHHcCCChHHHHHHHHHHHh-CCCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCccChH-------HHHHH
Q 001637 864 IFLGTGSTKEVDDLFGEMKK-RGLK----PDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPKTS-------TYNVL 931 (1039)
Q Consensus 864 ~~~~~g~~~~A~~~~~~~~~-~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l 931 (1039)
++-..|+..+-..++..... ..+. -.....++|++.|...+.++.|.++..+.. -|+.. ....+
T Consensus 178 ~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~ 253 (493)
T KOG2581|consen 178 SYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYL 253 (493)
T ss_pred HHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHH
Confidence 34455555555555544442 1112 223445677777777777888877776653 23211 12223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001637 932 IGDFAKEGKMHQARELLKEMQARGRNPN 959 (1039)
Q Consensus 932 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 959 (1039)
+..-+-.+++..|.+.|-.+++ ..|.
T Consensus 254 GrIkaiqldYssA~~~~~qa~r--kapq 279 (493)
T KOG2581|consen 254 GRIKAIQLDYSSALEYFLQALR--KAPQ 279 (493)
T ss_pred hhHHHhhcchhHHHHHHHHHHH--hCcc
Confidence 3444556788888888888877 4564
No 448
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.85 E-value=8.2e+02 Score=27.26 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH---CCCccChHHHHHHHHHH--HhcCCHHHHHHHHHHHHH
Q 001637 892 TYDTLISGHAKIGNKKESIQIYCEMIT---KGYVPKTSTYNVLIGDF--AKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 892 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 953 (1039)
.+..|..+++-.|++++|..++..+.. +-..|... +...| .+.|+.+.|...+++-.-
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~----~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQAT----VLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHH----HHHHHHHHhcCCCcchHHHHHhccc
Confidence 344677788899999999999855443 11112222 22233 357888888888777554
No 449
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=29.41 E-value=3.8e+02 Score=23.29 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC----C-CccCh-HHHHH----HHHHHHhcCCHHHHHHHHHHHH
Q 001637 891 STYDTLISGHAKIGNKKESIQIYCEMITK----G-YVPKT-STYNV----LIGDFAKEGKMHQARELLKEMQ 952 (1039)
Q Consensus 891 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~-~~~~~----l~~~~~~~g~~~~A~~~~~~~~ 952 (1039)
.++..|-.++.+.|++++++...+..+.. | +.-|. ..|-. -..++...|+.++|+..|++..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 34455556666666666655544444321 1 22222 22222 2235667788888888777643
No 450
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.32 E-value=2.3e+02 Score=27.33 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001637 886 LKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 886 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
..|+...|..++..+...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566665555566666666666666666554
No 451
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=28.70 E-value=3.9e+02 Score=23.23 Aligned_cols=98 Identities=11% Similarity=0.078 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHhHh
Q 001637 907 KESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLILS 986 (1039)
Q Consensus 907 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 986 (1039)
+.+..+++.+.+.|+--|.......+......+.+ ....+..++.++|+.++.+ ..... ..+.
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~-G~~~I~~~L~~kGi~~~~i------~~~l~--~~~~-------- 71 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGK-GPRRIRQKLKQKGIDREII------EEALE--EYDE-------- 71 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--HHHH------HHHHT--CS-H--------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccc-cHHHHHHHHHHHCCChHHH------HHHHH--HhhH--------
Confidence 34456666666666665555555555555442222 3445667777777665432 11111 1111
Q ss_pred HHHHHHHHHHHHHhCC-CCCChhhHHHHHHHhhCCCC
Q 001637 987 YRAEAKKLFMEMNEKG-FVPCESTQTCFSSTFARPGK 1022 (1039)
Q Consensus 987 ~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~l~~~G~ 1022 (1039)
.+.|.++.++-.... -.++......+...|.+.|-
T Consensus 72 -~e~a~~~~~kk~~~~~~~~~~~~~~K~~~~L~rrGF 107 (121)
T PF02631_consen 72 -EEEALELAEKKYRRYRKPSDRKRKQKLIRFLMRRGF 107 (121)
T ss_dssp -HHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHTT-
T ss_pred -HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC
Confidence 233555555443322 23455566677777777774
No 452
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.47 E-value=4.9e+02 Score=27.13 Aligned_cols=53 Identities=23% Similarity=0.227 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 001637 336 TLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEK 394 (1039)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 394 (1039)
.++..+.+.+++.+..+.+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555666666666666666664 344455566777788888888888777654
No 453
>PHA02875 ankyrin repeat protein; Provisional
Probab=28.02 E-value=8.5e+02 Score=26.89 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=25.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 001637 342 CKQQALEEALGLYEEMVKYGFLPDVVT---YSSIMGGLCKCGRLAEAKMLFREMEKMGVDPNH 401 (1039)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 401 (1039)
+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 176 ~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 176 MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3445543 3444556666655432 123444344555543 33444556666553
No 454
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.01 E-value=6.7e+02 Score=25.64 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=15.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 001637 792 ITILCRLGMTRKATSVLEDMRGR 814 (1039)
Q Consensus 792 ~~~~~~~g~~~~A~~~~~~~~~~ 814 (1039)
+-.|...|+...|...++...+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 34566677888888777666543
No 455
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=27.95 E-value=5e+02 Score=27.52 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 001637 836 INKALATYTQMINEGVSPN----TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHA 901 (1039)
Q Consensus 836 ~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 901 (1039)
.++.+..++.++. -.|+ ...|.+++......|.+++.+.+|++++..|..|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566667777766 4455 34567777777888888888888888888888887777677777654
No 456
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=27.81 E-value=3.5e+02 Score=23.69 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001637 594 EANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEK 640 (1039)
Q Consensus 594 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 640 (1039)
|..+-+..+....+.|++.....-++++.+.+++..|.++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555556667888888888888999999999999988887665
No 457
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=27.80 E-value=6.8e+02 Score=25.98 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-----hHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHH
Q 001637 924 KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSS-----TYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEM 998 (1039)
Q Consensus 924 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 998 (1039)
+......|+..+...|+...|--.|--. .....|.+. +-..++.+ ......+.+. +.|..++....
T Consensus 115 ~~~~l~~LGd~L~~~g~~~aA~iCYlla-g~~~~~~~~~~~~~~~~~llg~----~~~~~~~~~~----~tEiyEya~~l 185 (284)
T PF12931_consen 115 DSQALCALGDRLWQRGRVEAAHICYLLA-GNPLSPIPWLDDSNSRFSLLGA----SSFASPEAII----LTEIYEYALSL 185 (284)
T ss_dssp SS-TT--HHHHHHHTT-HHHHHHHHHHT-T---SSSBSSTTS--B--SSS-------TTSHHHHH----HHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCCcchhHHHHhHc-CCccCCcccccccchhhhhccC----CccccHHHHH----HHHHHHHHHHh
Confidence 3445556888888888877776665533 111222111 10011110 0111122221 23444444444
Q ss_pred H--hCC-CCCChh-hHHHHHHHhhCCCChHHHHHHHHHH
Q 001637 999 N--EKG-FVPCES-TQTCFSSTFARPGKKADAQRLLQEF 1033 (1039)
Q Consensus 999 ~--~~~-~~p~~~-~~~~l~~~l~~~G~~~eA~~~~~~~ 1033 (1039)
. ... ..|.-. .....+..|...|.+++|.+|++.+
T Consensus 186 ~~~~~~~~~~~l~~~Kl~yA~~Lae~G~~~~A~kY~d~i 224 (284)
T PF12931_consen 186 SSNNPQFGLPHLQPYKLQYASLLAEQGLLSEALKYCDAI 224 (284)
T ss_dssp ---STT---CCCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hccCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1 111 123433 3336788899999999999999955
No 458
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.61 E-value=7.8e+02 Score=26.29 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=27.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHccCCHHHHHHHHHHHHhCC
Q 001637 691 CKQGNLEIAFKLWDEMRRNGIMPNSVTCNVL----VGGLVGFGEIEKAMDVLNDMLVWG 745 (1039)
Q Consensus 691 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~ 745 (1039)
.+.++..-|......+.++++..=..+|.++ |...++.+..++|.+..-+|.+.|
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3445555555555555443332223333333 223335566667777766666543
No 459
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.07 E-value=4.4e+02 Score=23.25 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHCCCCCC-hhHHHHHHHHHHcCCChHHHHHHHHH
Q 001637 838 KALATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGE 880 (1039)
Q Consensus 838 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 880 (1039)
.+.++|+.|...|+--. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555555544443 33444445555555555555555543
No 460
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.06 E-value=2.2e+02 Score=19.87 Aligned_cols=28 Identities=7% Similarity=0.341 Sum_probs=12.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001637 518 KKGMLDEAANVMRKMKSQNIMPNVFIFA 545 (1039)
Q Consensus 518 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 545 (1039)
+.|..+++..++++|.+.|..-+...+.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 3344444444444444444444433333
No 461
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=27.01 E-value=1.7e+02 Score=18.93 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 001637 928 YNVLIGDFAKEGKMHQARELL 948 (1039)
Q Consensus 928 ~~~l~~~~~~~g~~~~A~~~~ 948 (1039)
|..+...+...|++++|+.+|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 344555566667777777763
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.96 E-value=2.6e+02 Score=30.50 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=44.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHH-------HCCCCCC-----hhHHHHHHHHHHcCCChHHHHHHHHHHHh--CC----CC
Q 001637 826 LMRGYWVSSHINKALATYTQMI-------NEGVSPN-----TATYNILLGIFLGTGSTKEVDDLFGEMKK--RG----LK 887 (1039)
Q Consensus 826 l~~~~~~~~~~~~A~~~~~~~~-------~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~ 887 (1039)
++......++..+-++..+... +.|..|- -.+...|+...+-.|++..|++.++.+.- .+ +.
T Consensus 81 vL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~ 160 (404)
T PF10255_consen 81 VLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVP 160 (404)
T ss_pred HHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCc
Confidence 3445556666666666555421 1122221 12233444556666777777666655431 10 01
Q ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001637 888 P-DASTYDTLISGHAKIGNKKESIQIYCEMI 917 (1039)
Q Consensus 888 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 917 (1039)
+ ...++--++-+|.-.+++.+|++.|...+
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11122234445556666666666666654
No 463
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=25.72 E-value=6.7e+02 Score=24.89 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=48.6
Q ss_pred CCCCCChhHHHHHHHHHHcCCChHHHHHHHHHHHh-CCC-----------CCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001637 849 EGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKK-RGL-----------KPDASTYDTLISGHAKIGNKKESIQIYCEM 916 (1039)
Q Consensus 849 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 916 (1039)
++++-+...+..++ +...|+..+|+..++.-.. .|. .|.+.....++..| ..+++++|.+.+.++
T Consensus 188 Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~l 264 (333)
T KOG0991|consen 188 EKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAEL 264 (333)
T ss_pred hCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence 34444444333333 4457888888877776553 222 46666666666654 567899999999999
Q ss_pred HHCCCccCh
Q 001637 917 ITKGYVPKT 925 (1039)
Q Consensus 917 ~~~~~~p~~ 925 (1039)
-+.|+.|..
T Consensus 265 w~lgysp~D 273 (333)
T KOG0991|consen 265 WKLGYSPED 273 (333)
T ss_pred HHcCCCHHH
Confidence 999998843
No 464
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=25.71 E-value=1.8e+02 Score=31.15 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCCchhhHHHhHhHHHHHHHHHHHHHhCC
Q 001637 941 MHQARELLKEMQARGRNPNSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEKG 1002 (1039)
Q Consensus 941 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1002 (1039)
...|+++++++.. .-+|-||..+.-++...|+--+.+.--+...|.+|.++++++...+
T Consensus 334 ~~~Al~yL~kA~d---~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 334 IKKALEYLKKAQD---EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHH---S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc---cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 3577888888876 5567778888887777765444444334566899999999997653
No 465
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.65 E-value=7.4e+02 Score=25.39 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001637 506 VITYSSIINGYVKKGMLDEAANVMRKMKS 534 (1039)
Q Consensus 506 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 534 (1039)
...|..+...|++.++.+.+.+..++..+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45566677777777777777766655443
No 466
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.62 E-value=1.6e+02 Score=18.60 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHH
Q 001637 836 INKALATYTQMINEGVSPNTATYN 859 (1039)
Q Consensus 836 ~~~A~~~~~~~~~~~~~p~~~~~~ 859 (1039)
++.|..+|++.+. +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4566666666665 445555544
No 467
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.56 E-value=3.5e+02 Score=28.58 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001637 663 EVQSVYSGMKEMGLTPD----LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLV 726 (1039)
Q Consensus 663 ~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 726 (1039)
++..++..++.. -|+ +..|.+++......|.++..+.+|++++..|..|-...-..+++.+-
T Consensus 121 ei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 121 EILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 455555555553 344 34566677777777777777777777777776665555444544443
No 468
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.36 E-value=4.3e+02 Score=25.07 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=16.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 001637 896 LISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 896 l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34457777778888777777764
No 469
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.96 E-value=4.8e+02 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=16.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 001637 512 IINGYVKKGMLDEAANVMRKMKS 534 (1039)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~~ 534 (1039)
.+..|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 44567777888888888777765
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.84 E-value=4e+02 Score=26.93 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=31.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC----CCc-cChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001637 895 TLISGHAKIGNKKESIQIYCEMITK----GYV-PKTSTYNVLIGDFAKEGKMHQARELLKEMQ 952 (1039)
Q Consensus 895 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 952 (1039)
.+...|.+.|++++|.++|+.+... |.. +...+...+..++...|+.++.+.+.-++.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4555566677777777777666421 111 122334445556666667666666655443
No 471
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=23.82 E-value=1.8e+02 Score=29.96 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=24.6
Q ss_pred CCCHh-HHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 001637 363 LPDVV-TYSSIMGGLCKCGRLAEAKMLFREMEKMGVD 398 (1039)
Q Consensus 363 ~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 398 (1039)
.||.. -|+..|..-.+.||+++|+.++++..+.|+.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34433 3557777777777777777777777777765
No 472
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=23.50 E-value=1.2e+03 Score=26.99 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=20.2
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001637 427 MMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNL 461 (1039)
Q Consensus 427 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (1039)
|...++.-....+-..+-.+...|.++++...+..
T Consensus 124 m~~~~~~~~~~V~LE~al~ll~qG~ie~~~~~lt~ 158 (547)
T PF14929_consen 124 MKTPTFEEKLAVSLEHALFLLSQGNIEEAAYQLTI 158 (547)
T ss_pred hcccchhhhhHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 33333333344566666667788888866555544
No 473
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.08 E-value=6.1e+02 Score=29.29 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=44.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC--CcccHHHHHHHHHHHHhcCChH------HHHHHHHHHHhCCCCCCHHhHHHH
Q 001637 441 TLMDGLFKAGRPSEAEDTFNLILKHN--LVSNHVTYSSLIDGCCKLGDMS------AAESILQEMEEKHVVPNVITYSSI 512 (1039)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 512 (1039)
+|..+|...|++-.+.++++.....+ -+.-...+|..|+...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67788888888888888887777643 2222335666677777777643 2333333333 23366666666
Q ss_pred HHHHHH
Q 001637 513 INGYVK 518 (1039)
Q Consensus 513 i~~~~~ 518 (1039)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 555443
No 474
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=22.53 E-value=4.3e+02 Score=21.59 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001637 491 ESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMP-NVFIFAALIDGYFKAGKQEVAFDLYND 566 (1039)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 566 (1039)
..-++.-.+.++. |......+...+...|++++|++.+-.+.+..... +...-..|+..+...|.-+....-+.+
T Consensus 8 ~~al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 8 IAALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
No 475
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=22.53 E-value=2.7e+02 Score=21.13 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=36.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 001637 328 EPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCK 378 (1039)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 378 (1039)
.|....++.++..+++..-+++++..+.++.+.|.- +..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 356667888888888888888888888888888753 56666666665544
No 476
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.52 E-value=2.8e+02 Score=28.06 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=27.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001637 861 LLGIFLGTGSTKEVDDLFGEMKK----RGL-KPDASTYDTLISGHAKIGNKKESIQIYCEM 916 (1039)
Q Consensus 861 l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 916 (1039)
+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++.+.+-=++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44455566666666666666542 111 112223334555556666666655544433
No 477
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=22.44 E-value=1.5e+02 Score=30.61 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=31.2
Q ss_pred cCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 001637 327 VEPNLI-THTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTY 369 (1039)
Q Consensus 327 ~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 369 (1039)
+.||.. -|+..|..-.+.|++++|+.++++..+.|+.--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345544 3678888888999999999999999888865333333
No 478
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.33 E-value=1.1e+03 Score=26.17 Aligned_cols=24 Identities=21% Similarity=-0.050 Sum_probs=14.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHH
Q 001637 799 GMTRKATSVLEDMRGRGIMMDTIT 822 (1039)
Q Consensus 799 g~~~~A~~~~~~~~~~~~~~~~~~ 822 (1039)
.+.+.|+.++..|.+.|..|..+.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 566667777777776665554433
No 479
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.12 E-value=9.8e+02 Score=27.30 Aligned_cols=123 Identities=12% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCC
Q 001637 246 LIDGYCKSGDLSSALKLMEGMRREGVIPDIV-SYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGN 324 (1039)
Q Consensus 246 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1039)
++.-|.+.+++++|..++..|-=........ +.+.+.+.+.+..--.+....++.++.
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg--------------------- 472 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG--------------------- 472 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh---------------------
Q ss_pred cccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 001637 325 VEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKMG 396 (1039)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 396 (1039)
.=..|....-...+.-|.. .=.+-|+++|..|++.+ .+..........|+.|.-++++-.+...|
T Consensus 473 sF~ap~rpl~~~~~~ey~d-~V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 473 SFYAPTRPLSDATVLEYRD-PVSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred hccCCCcCccHHHHHHHHH-HHHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhcc
No 480
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.03 E-value=1.9e+02 Score=28.35 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=26.0
Q ss_pred ccCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 001637 762 KSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGR 814 (1039)
Q Consensus 762 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 814 (1039)
+.++.+.+.+++.++++.- +.....|..+...-.+.|+++.|.+.+++..+.
T Consensus 7 ~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3445555555555555431 223445555555555555555555555555543
No 481
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=21.41 E-value=1.6e+02 Score=30.06 Aligned_cols=55 Identities=18% Similarity=0.139 Sum_probs=29.8
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCcc
Q 001637 865 FLGTGSTKEVDDLFGEMKKRGLKPDA-STYDTLISGHAKIGNKKESIQIYCEMITKGYVP 923 (1039)
Q Consensus 865 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 923 (1039)
..+.|+.++|..+|+.+.. ..|+. ....-++...-..+++-+|-+.|-+++. +.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALT--ISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCC
Confidence 4567777777777777765 23332 2222233333334455566666666655 555
No 482
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.15 E-value=1.9e+02 Score=22.67 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHCCCccChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001637 906 KKESIQIYCEMITKGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 906 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 953 (1039)
+++|+.+++++... -..|++++|+.++...++
T Consensus 3 l~kai~Lv~~A~~e----------------D~~gny~eA~~lY~~ale 34 (75)
T cd02680 3 LERAHFLVTQAFDE----------------DEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHHh----------------hHhhhHHHHHHHHHHHHH
Confidence 45666666666542 145677777777777666
No 483
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=21.02 E-value=6.4e+02 Score=22.96 Aligned_cols=98 Identities=10% Similarity=0.125 Sum_probs=55.3
Q ss_pred HHhCCCCCChh--hHHHHHHHHHccCCHHHHHHHHHHHHhcccCCcccccccccccccCCCcccCCChhhHHHHHHHHHh
Q 001637 266 MRREGVIPDIV--SYNTLISGFCKRGDFVKAKSLIDEVLGSQKERDADTSKADNFENENGNVEVEPNLITHTTLISAYCK 343 (1039)
Q Consensus 266 m~~~g~~pd~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (1039)
|.+.+..++.. ..|++++-....+++.--+.+++.+....+.. + . -..+...|.+++.+.++
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~---------~------~-~~~~~ssf~~if~Slsn 91 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDN---------I------I-GWLDNSSFHIIFKSLSN 91 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHH---------H------h-hhcccchHHHHHHHHcc
Confidence 44445555543 35677777677777777777766664310000 0 0 01233456677776655
Q ss_pred cCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 001637 344 QQA-LEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKC 379 (1039)
Q Consensus 344 ~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 379 (1039)
... ---+..+|.-|.+.+.+.+..-|..+|.++.+.
T Consensus 92 SsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 92 SSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 544 344566777777766677777777777665443
No 484
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.89 E-value=4.7e+02 Score=27.28 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=28.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001637 791 LITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMIN 848 (1039)
Q Consensus 791 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 848 (1039)
++..+.+.++..+-...++.+.. ...-...+......|++..|+++..+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444555555555555554432 22233345555667777777777776655
No 485
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.37 E-value=2.5e+02 Score=21.26 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 001637 399 PNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFK 448 (1039)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 448 (1039)
|....++.++..+++..-.++++..+.++...|.- +..+|..-+..+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 34445555566555555566666666666655542 44455444444433
No 486
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=20.18 E-value=4.1e+02 Score=27.83 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=44.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHH
Q 001637 791 LITILCRLGMTRKATSVLEDMRGRGI-MMD--TITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLGIFL 866 (1039)
Q Consensus 791 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 866 (1039)
=++-|.+..++..|...|.+-+.... .|| .+.|+.-..+-...|++..|+.=..+.+. +.|+ .-.|..=..++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHHH
Confidence 34455666666666666665554322 122 34555555555555666666666666555 5564 223333334444
Q ss_pred cCCChHHHHHHHHH
Q 001637 867 GTGSTKEVDDLFGE 880 (1039)
Q Consensus 867 ~~g~~~~A~~~~~~ 880 (1039)
...+.++|....++
T Consensus 165 eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 165 ELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHhh
Confidence 44554444444433
No 487
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.14 E-value=7.8e+02 Score=23.66 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=14.1
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 001637 936 AKEGKMHQARELLKEMQA 953 (1039)
Q Consensus 936 ~~~g~~~~A~~~~~~~~~ 953 (1039)
.+.|+++.|...++-|..
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 367888888888887776
Done!