Query 001637
Match_columns 1039
No_of_seqs 727 out of 5366
Neff 11.2
Searched_HMMs 29240
Date Tue Mar 26 16:46:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001637.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_934-937//hhsearch_pdb/001637hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 331.4 40.3 435 80-569 65-503 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 318.1 45.7 179 785-970 407-594 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 226.7 25.5 185 242-447 28-221 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 225.3 23.5 38 338-375 33-70 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 212.4 48.4 311 613-971 69-384 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 207.4 49.3 240 760-1021 145-387 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 196.7 41.3 239 680-963 237-485 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 194.4 45.0 197 785-1001 270-478 (514)
9 3fp2_A TPR repeat-containing p 1.0 1 1 189.8 43.8 237 682-963 245-498 (537)
10 1xi4_A Clathrin heavy chain; a 1.0 1 1 186.2 84.3 378 508-945 987-1375(1630)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=331.37 Aligned_cols=435 Identities=11% Similarity=0.017 Sum_probs=189.4
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 81985489999999574799889764999999999359956999999998728989886039999999981199377999
Q 001637 80 TCGRFAKASDTFFTMRNFNIIPVLPLWNKLIYHFNASGLVSQVWIVYTHMISCGVLPNVFTINVLVHSFCKVGNLSFALD 159 (1039)
Q Consensus 80 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 159 (1039)
.+|.+..+...|..++ .++...|+.++..+.+.|++++|+.+|.+|+. ..|+..++..++.+|.+.|++++|+.
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 5676678877546633----78999999999999874583479999999996--08993579999999997476999999
Q ss_pred HHHHC-CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88738-99988210999999999439633799999999879987690117999999994295556999999998299987
Q 001637 160 FLRNV-DIDVDNVTYNTVIWGLCEQGLANQGFGLLSIMVKNGISVDSFSCNILVKGFCRIGMVKYGEWVMDNLVNGGVCR 238 (1039)
Q Consensus 160 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 238 (1039)
+|+.+ ..+++..+|+.++..+.+.|++++|..+|+++. |+.. ....+.+.+. ...+...
T Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~ 198 (597)
T 2xpi_A 139 LLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKL 198 (597)
T ss_dssp HHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSSCCH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCC----CCCCCCCCCC-----------CCCCCCH
T ss_conf 999873354565089999999998866999999984248-----8632----2323433432-----------1123512
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH--H-HHHHHHCCCCCCCCCCCC
Q ss_conf 7887999999998439932799999999868989885449999999980599778999--9-999970536776433223
Q 001637 239 DVIGFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGDFVKAKS--L-IDEVLGSQKERDADTSKA 315 (1039)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~ 315 (1039)
++.+|+.++.+|.+.|++++|+++|++|.+.++. +...+..+...+...+....+.. + +..+..
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~------------ 265 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK------------ 265 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC------------
T ss_conf 5899999889999839989999999999972932-569999999850346156789998657742344------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 43333589866677856699999999960998899999999997899978967999999999359933699999999868
Q 001637 316 DNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREMEKM 395 (1039)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (1039)
.+......+|+.++..|.+.|++++|.++|+.+.+. +++..+++.++..+.+.|++++|..+|+++.+.
T Consensus 266 ---------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 266 ---------EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp ---------GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf ---------308899999999999980731399999999876438--830999999999999846899999999999972
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99978878999999999619986899999999883998789999999999998199238999999999789865599899
Q 001637 396 GVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLFKAGRPSEAEDTFNLILKHNLVSNHVTYS 475 (1039)
Q Consensus 396 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 475 (1039)
+.. +..++..++.++.+.|+.++|..+++++...... +..++..++..|.+.|++++|.++|+.+.+.. +.+..+|.
T Consensus 335 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 411 (597)
T 2xpi_A 335 DPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWI 411 (597)
T ss_dssp CTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_conf 955-3799999999999827777999999999851835-47999999999998356999999999998729-77789999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999981399589999999999579888987699999999973999899999999986899998999999999999639
Q 001637 476 SLIDGCCKLGDMSAAESILQEMEEKHVVPNVITYSSIINGYVKKGMLDEAANVMRKMKSQNIMPNVFIFAALIDGYFKAG 555 (1039)
Q Consensus 476 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 555 (1039)
.++..|.+.|++++|.++|+++...++. +..+|..++..|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHC
T ss_conf 9999999757779999999999986813-43899999999998579999999999999848-887679999999999818
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 97899999999997
Q 001637 556 KQEVAFDLYNDLKL 569 (1039)
Q Consensus 556 ~~~~a~~~~~~~~~ 569 (1039)
++++|.+.|+++..
T Consensus 490 ~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 490 DMQTAINHFQNALL 503 (597)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999998
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=318.05 Aligned_cols=179 Identities=12% Similarity=-0.008 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q ss_conf 998999999999619968999999999839998998999999999871099699999999999879998-8668999999
Q 001637 785 QAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSP-NTATYNILLG 863 (1039)
Q Consensus 785 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 863 (1039)
...|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++..|...|++++|++.|+++.+ ..| +..+|..++.
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 483 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGV 483 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_conf 8999999999997577799999999999868-13438999999999985799999999999998--48887679999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q ss_conf 987189967899999999869----99988--9889999999740399999999999999789866-8688999999999
Q 001637 864 IFLGTGSTKEVDDLFGEMKKR----GLKPD--ASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTYNVLIGDFA 936 (1039)
Q Consensus 864 ~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 936 (1039)
++...|++++|.++++++.+. +..|+ ...|..++.++.+.|++++|.+.++++++. .| +..+|..++..|.
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYL 561 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
T ss_conf 99981899999999999998532345453549999999999999804799999999999973--8997389999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf 3199889999999999779998-852399999988
Q 001637 937 KEGKMHQARELLKEMQARGRNP-NSSTYDILIGGW 970 (1039)
Q Consensus 937 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 970 (1039)
..|++++|.+.++++++ +.| ++..+..++..|
T Consensus 562 ~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
T ss_conf 81789999999999972--0888748999999987
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=226.70 Aligned_cols=185 Identities=18% Similarity=0.236 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 7999999998439932799999999868989885449999999980599---------7789999999970536776433
Q 001637 242 GFNILIDGYCKSGDLSSALKLMEGMRREGVIPDIVSYNTLISGFCKRGD---------FVKAKSLIDEVLGSQKERDADT 312 (1039)
Q Consensus 242 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~ 312 (1039)
.++.+|++|++.|++++|+++|++|.+.|+.||.++|+.+|.+|++.+. ++.|.++|++|..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~--------- 98 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV--------- 98 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHH---------
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998---------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 22343333589866677856699999999960998899999999997899978967999999999359933699999999
Q 001637 313 SKADNFENENGNVEVEPNLITHTTLISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGGLCKCGRLAEAKMLFREM 392 (1039)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 392 (1039)
.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 99 ------------~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 99 ------------DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp ------------TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ------------08999899999999999846977889999999997289886111048999999888999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 8689997887899999999961998689999999988399878999999999999
Q 001637 393 EKMGVDPNHVSYTTLIDSLFKAGCAMEAFALQSQMMVRGVAFDVVVYTTLMDGLF 447 (1039)
Q Consensus 393 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 447 (1039)
.+.|+.||..+|+.++.+|++.|+.++|.+++++|...|..|+..||+.++..++
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 8629999999999999998538989999999999999489969999999999983
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=225.32 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=11.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999609988999999999978999789679999999
Q 001637 338 ISAYCKQQALEEALGLYEEMVKYGFLPDVVTYSSIMGG 375 (1039)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 375 (1039)
|++|++.|++++|.++|++|.+.|+.||..+|+.+|.+
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~ 70 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV 70 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99998598999999999999981899878399999999
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=212.39 Aligned_cols=311 Identities=18% Similarity=0.189 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q ss_conf 39999999984499999999999998789998877799999999805925-89999999886599978-86799999999
Q 001637 613 NYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EVQSVYSGMKEMGLTPD-LATYNIMISAS 690 (1039)
Q Consensus 613 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 690 (1039)
.+..+...+...|++++|+..++++.+.. |.+...+..+...+...|+. +|...++.+... .|+ ...+..+...+
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
T ss_conf 99999999987799999999999998749-653999999999999858999999999999975--989689999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 91299999999999999869998989999999998705997799999999985798988575999999864058825899
Q 001637 691 CKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSSKSRRGDVIL 770 (1039)
Q Consensus 691 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 770 (1039)
...|++++|...|+++.+.. +.+..+|..+...+...|++++|...++++....
T Consensus 146 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------- 199 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD------------------------- 199 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------------------------
T ss_conf 98468999999999998729-8978999999999998599999999999998559-------------------------
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998299766998999999999619968999999999839998998999999999871099699999999999879
Q 001637 771 QMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEG 850 (1039)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 850 (1039)
+.+...+..++.++...|++++|...+++..... +.+..++..++..+...|++++|++.|+++++
T Consensus 200 -----------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-- 265 (388)
T 1w3b_A 200 -----------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-- 265 (388)
T ss_dssp -----------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred -----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
T ss_conf -----------8867999999999998578999999999998529-68789999999999986889999999999986--
Q ss_pred CCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHH
Q ss_conf 9988-668999999987189967899999999869999889889999999740399999999999999789866-86889
Q 001637 851 VSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVP-KTSTY 928 (1039)
Q Consensus 851 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 928 (1039)
..|+ ..++..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++++ ..| +...+
T Consensus 266 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 342 (388)
T 1w3b_A 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAH 342 (388)
T ss_dssp TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHH
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCHHHH
T ss_conf 499988999999999998699799999999998649-44499999999999984899999999999986--098739999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q ss_conf 999999993199889999999999779998-8523999999884
Q 001637 929 NVLIGDFAKEGKMHQARELLKEMQARGRNP-NSSTYDILIGGWC 971 (1039)
Q Consensus 929 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 971 (1039)
..++..|...|++++|.+.++++++ +.| +...+..++..+.
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf 7799999986888999999999986--19997899985999998
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=207.42 Aligned_cols=240 Identities=14% Similarity=0.080 Sum_probs=121.2
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 64058825899999999982997669989999999996199689999999998399989989999999998710996999
Q 001637 760 SSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKA 839 (1039)
Q Consensus 760 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 839 (1039)
+...|+.+.|...+.++++.. +.+...+..++.++...|++++|...++++.+.+ +.+...|..++..+...+++++|
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 998468999999999998729-8978999999999998599999999999998559-88679999999999985789999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 999999998799988-6689999999871899678999999998699998898899999997403999999999999997
Q 001637 840 LATYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMIT 918 (1039)
Q Consensus 840 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 918 (1039)
+..|++++. ..|+ ..++..++.++...|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++++
T Consensus 223 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 223 VAAYLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999985--296878999999999998688999999999998649-99889999999999986997999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8986686889999999993199889999999999779998-852399999988420898423698857679999999999
Q 001637 919 KGYVPKTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNP-NSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFME 997 (1039)
Q Consensus 919 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 997 (1039)
. .+.+...+..++..+...|++++|.+.++++.+ ..| +..++..++..+...|+ +++|...+++
T Consensus 300 ~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~ 364 (388)
T 1w3b_A 300 L-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGK------------LQEALMHYKE 364 (388)
T ss_dssp H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTC------------CHHHHHHHHH
T ss_pred H-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHH
T ss_conf 4-944499999999999984899999999999986--098739999779999998688------------8999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHCCC
Q ss_conf 994899888-124888988740789
Q 001637 998 MNEKGFVPC-ESTQTCFSSTFARPG 1021 (1039)
Q Consensus 998 ~~~~~~~p~-~~~~~~~~~~l~~~G 1021 (1039)
+.+. .|+ ...+..++.++...|
T Consensus 365 a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 365 AIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHH--CCCCHHHHHHHHHHHHHCC
T ss_conf 9861--9997899985999998745
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=196.66 Aligned_cols=239 Identities=8% Similarity=-0.036 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 86799999999912999999999999998699989899999999987059977999999999857989885759999998
Q 001637 680 LATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDT 759 (1039)
Q Consensus 680 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 759 (1039)
..++..++..+...|++++|...++.+.+.. |+...+..++..+...|++++|...++++...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------- 299 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--------------- 299 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT---------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---------------
T ss_conf 9999999999998789999999999998638--64899999999999888899999999998613---------------
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 64058825899999999982997669989999999996199689999999998399989989999999998710996999
Q 001637 760 SSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKA 839 (1039)
Q Consensus 760 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 839 (1039)
.+.+...+..++.++...|++++|...++++.... +.+...+..++..+...|++++|
T Consensus 300 ---------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 300 ---------------------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp ---------------------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHH
T ss_pred ---------------------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHH
T ss_conf ---------------------86778999999999998077999999999998738-50289999999999986899999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHC---CCCHHHHH
Q ss_conf 99999999879998-86689999999871899678999999998699-9988----9889999999740---39999999
Q 001637 840 LATYTQMINEGVSP-NTATYNILLGIFLGTGSTKEVDDLFGEMKKRG-LKPD----ASTYDTLISGHAK---IGNKKESI 910 (1039)
Q Consensus 840 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~---~g~~~~A~ 910 (1039)
+..++++.. ..| +...+..++.++...|++++|...++++.+.. ..+. ...+..++.++.. .|++++|.
T Consensus 358 ~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 358 ETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999998--754677899999999987889999999999999761233217899999999999986633258889999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 9999999789866-8688999999999319988999999999977999885239
Q 001637 911 QIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTY 963 (1039)
Q Consensus 911 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 963 (1039)
..+++++. ..| +...+..++..|...|++++|.+.++++.+ +.|+....
T Consensus 436 ~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~ 485 (514)
T 2gw1_A 436 NLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEK 485 (514)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHH
T ss_pred HHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCCHHH
T ss_conf 99999987--5855589999999999982579999999999987--66146889
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=194.36 Aligned_cols=197 Identities=12% Similarity=0.089 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q ss_conf 9989999999996199689999999998399989989999999998710996999999999998799988-668999999
Q 001637 785 QAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALATYTQMINEGVSPN-TATYNILLG 863 (1039)
Q Consensus 785 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 863 (1039)
...+..++.++...|++++|...++++.... +.+...+..++..+...|++++|+..++++.. ..|+ ...+..++.
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 346 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFPYIQLAC 346 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCHHHHHHHHHHHH
T ss_conf 8999999999998888999999999986138-67789999999999980779999999999987--38502899999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHH
Q ss_conf 9871899678999999998699998898899999997403999999999999997898668-------688999999999
Q 001637 864 IFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHAKIGNKKESIQIYCEMITKGYVPK-------TSTYNVLIGDFA 936 (1039)
Q Consensus 864 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~ 936 (1039)
++...|++++|...++++.+.. +.+...+..++..+...|++++|...+++++. ..|+ ...+..++..|.
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE--LENKLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHTSSSCSSCSHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9998689999999999999875-46778999999999878899999999999997--61233217899999999999986
Q ss_pred H---CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3---199889999999999779998-8523999999884208984236988576799999999999948
Q 001637 937 K---EGKMHQARELLKEMQARGRNP-NSSTYDILIGGWCELSNEPELDRTLILSYRAEAKKLFMEMNEK 1001 (1039)
Q Consensus 937 ~---~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 1001 (1039)
. .|++++|.+.++++.+ ..| +..++..++..+...|+ +++|...++++.+.
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQQED------------IDEAITLFEESADL 478 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCC------------HHHHHHHHHHHHHH
T ss_conf 63325888999999999987--585558999999999998257------------99999999999876
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=189.83 Aligned_cols=237 Identities=11% Similarity=0.008 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 79999999991299999999999999869998989999999998705997799999999985798988575999999864
Q 001637 682 TYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVWGFSPTSTTIKILLDTSS 761 (1039)
Q Consensus 682 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 761 (1039)
++..+...+...|++++|...++.+.+. .|+...+..+...+...|++++|...++++...
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------- 305 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL----------------- 305 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-----------------
T ss_conf 9999999987545578999999999866--987469999999999803799999999997545-----------------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 05882589999999998299766998999999999619968999999999839998998999999999871099699999
Q 001637 762 KSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYNALMRGYWVSSHINKALA 841 (1039)
Q Consensus 762 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 841 (1039)
. +.+..++..++.++...|++++|...++++.... +.+...|..++..+...|++++|++
T Consensus 306 ------------------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 306 ------------------N-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp ------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf ------------------9-9987999999999986689999999999999859-9977999999999998477999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHCC----------CC
Q ss_conf 9999998799988-66899999998718996789999999986999-98----898899999997403----------99
Q 001637 842 TYTQMINEGVSPN-TATYNILLGIFLGTGSTKEVDDLFGEMKKRGL-KP----DASTYDTLISGHAKI----------GN 905 (1039)
Q Consensus 842 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~----------g~ 905 (1039)
.++++++ ..|+ ...+..++.++...|++++|...++++.+... .+ ....+.....++... |+
T Consensus 366 ~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 366 FFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999987--39998599999999998837889999999999870976244688899999889999997640100224757
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 999999999999789866-8688999999999319988999999999977999885239
Q 001637 906 KKESIQIYCEMITKGYVP-KTSTYNVLIGDFAKEGKMHQARELLKEMQARGRNPNSSTY 963 (1039)
Q Consensus 906 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 963 (1039)
+++|...+++++. ..| +...+..++..|...|++++|.+.++++++ +.|+....
T Consensus 444 ~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~ 498 (537)
T 3fp2_A 444 FNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--CHHH
T ss_pred HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCCHHH
T ss_conf 9999999999997--4999789999999999985149999999999998--68993888
No 10
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=1.00 E-value=1 Score=186.16 Aligned_cols=378 Identities=14% Similarity=0.154 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 699999999973999899999999986899--998999999999999639978999999999974998647899999999
Q 001637 508 TYSSIINGYVKKGMLDEAANVMRKMKSQNI--MPNVFIFAALIDGYFKAGKQEVAFDLYNDLKLVGMEENNYILDIFVNY 585 (1039)
Q Consensus 508 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (1039)
-....+++|...|.+.+|++++++..-.+. ..+...-+.++.+..+. +.....+....... ....-+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANI 1058 (1630)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-CHHHHHHHHHHHHH-------CCHHHHHHH
T ss_conf 7479999999698989999999999737875545478999999999985-80559999987412-------369999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH-HH
Q ss_conf 99529988999999999736988787439999999984499999999999998789998877799999999805925-89
Q 001637 586 LKRHGKMKEANGLVVDMMSRGLVPDRVNYTSLMDGFFKVGKETAALNIAQEMTEKNIPFDVTAYNVLINGLLRHGKC-EV 664 (1039)
Q Consensus 586 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~a 664 (1039)
+...|.+++|..++++... ....... .+...+++++|.++.++. .++.+|..+..++...|++ +|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~V---Lie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQV---LIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHCCCHHHHHHHHHHCCC-----HHHHHHH---HHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHCCCHHHH
T ss_conf 9858989999999998088-----7999999---999986399999999854------8887999999999847989999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99999988659997886799999999912999999999999998699989899999999987059977999999999857
Q 001637 665 QSVYSGMKEMGLTPDLATYNIMISASCKQGNLEIAFKLWDEMRRNGIMPNSVTCNVLVGGLVGFGEIEKAMDVLNDMLVW 744 (1039)
Q Consensus 665 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 744 (1039)
...|.+. .+...|..++.++.+.|++++|++.+....+.. ++......++.+|.+.+++++...++ .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHHC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHCCHHHHHHHH----H-
T ss_conf 9999835------996999999999997589999999999998424--55422279999998526799999998----2-
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 98988575999999864058825899999999982997669989999999996199689999999998399989989999
Q 001637 745 GFSPTSTTIKILLDTSSKSRRGDVILQMHERLVDMGVRLNQAYYNSLITILCRLGMTRKATSVLEDMRGRGIMMDTITYN 824 (1039)
Q Consensus 745 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 824 (1039)
.++...+..+...|...|+++.|..++..+ ..|..++.+|.+.|++++|.+.+++.. +..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------HHHHHHHHHHHHHCCHHHHHHHHHHHC------CHHHHH
T ss_conf --788999999999998368899999999843---------579999999997078999999999838------987899
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--C
Q ss_conf 99999871099699999999999879998866899999998718996789999999986999988988999999974--0
Q 001637 825 ALMRGYWVSSHINKALATYTQMINEGVSPNTATYNILLGIFLGTGSTKEVDDLFGEMKKRGLKPDASTYDTLISGHA--K 902 (1039)
Q Consensus 825 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~ 902 (1039)
.+..+|...+++..|...... +..++..+..++..|...|.+++|..+++...... +-....|.-+...+. +
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCC
T ss_conf 999998635688999998775-----53288999999999998589999999999885668-237689999999997489
Q ss_pred CCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 399999999999999789866------8688999999999319988999
Q 001637 903 IGNKKESIQIYCEMITKGYVP------KTSTYNVLIGDFAKEGKMHQAR 945 (1039)
Q Consensus 903 ~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~ 945 (1039)
-++..++.+.|.+-.. ++| +...|..+...|.+.|+++.|.
T Consensus 1329 peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 8999999999998406--5267677777878999999999416099999
Done!