BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001638
(1039 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 295 bits (754), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 245/835 (29%), Positives = 387/835 (46%), Gaps = 88/835 (10%)
Query: 112 KAVESRGGVEGLAREVSVSLPDGVASEEVSNRQNVYGFNRYAEKPARSFWMFVWEALHDL 171
+A S+ E LA VS G+ ++V YG N + +S W V E DL
Sbjct: 2 EAAHSKTTEECLAY-FGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDL 60
Query: 172 TLIILMICAAVSIGVGIPTEGWPDGVYDXXXXXXXXXXXXXXTAVSDYKQSLQFKALD-- 229
+ IL++ A +S + EG + V V +++ A++
Sbjct: 61 LVRILLLAACISFVLAWFEEG-EETVTAFVEPFVILLILIANAIVGVWQERNAENAIEAL 119
Query: 230 KEKKNLIVQVTRDGYR--KKLSIYDLVVGDIVHLSIGDQVPADG--ILISGYSLTIDESS 285
KE + + +V R + +++ D+V GDIV +++GD+VPAD + I +L +D+S
Sbjct: 120 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSI 179
Query: 286 LSGE-------TEPV----HINRDRP-FLLSGTKVQDGSGKMLVTSVGMRTEWGRLMVTL 333
L+GE TEPV +N+D+ L SGT + G +V + G+ TE G++ +
Sbjct: 180 LTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQM 239
Query: 334 SEGGEDETPLQVKLNGVATVIGKIGXXXXXXXXXXXXXXXXXEKAQHHQIKHWSSIDAMK 393
+ +D+TPLQ KL+ + K+ + H S
Sbjct: 240 AATEQDKTPLQQKLDEFGEQLSKV-------ISLICVAVWLINIGHFNDPVHGGSW-IRG 291
Query: 394 LLNYFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTD 453
+ YF PEGLP +T LA +++ A+VR L + ET+G S IC+D
Sbjct: 292 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSD 351
Query: 454 KTGTLTTNHMVVTKLWICN---------------------EAKTIKSGDNEKLLKPSVSD 492
KTGTLTTN M V K++I + E + +K N+K ++ D
Sbjct: 352 KTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLK---NDKPVRSGQYD 408
Query: 493 AVFNIFLQSIFQNTGSEVVKDKDGRTNILGTPTERAILEFGLILGGDSTFHREESAIVKV 552
+ + N S + G +G TE A+ + +T R S + +
Sbjct: 409 GLVELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERA 468
Query: 553 EPFNSV----------------KKRMSVLVSLPNNG---GFRVFCKGASEIILNMCDKII 593
NSV +K MSV S + G ++F KGA E +++ C+ +
Sbjct: 469 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCN-YV 527
Query: 594 NADGKAVPISEEQRKNLTNVIN--GFSSEALRTLCLAFQDIKGNHKAESIP--------E 643
VP++ ++ + +VI G + LR L LA +D + + E
Sbjct: 528 RVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYE 587
Query: 644 NNYTLIAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTD---- 699
+ T + VVG+ DP R V +++ C AGI V M+TGDN TA AI + GI +
Sbjct: 588 TDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDV 647
Query: 700 GGLAIEGTDFRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTND 759
A G +F E +E + AR PT K +V L++ F E+ A+TG+G ND
Sbjct: 648 ADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQS-FDEITAMTGDGVND 706
Query: 760 APALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSVYINIQKFVQFQLT 819
APAL +A+IG+AMG +GT VAK +++++ DDNF+TIV GR++Y N+++F+++ ++
Sbjct: 707 APALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLIS 765
Query: 820 VNIVALVINFVAACITGSAPLTAVQLLWVNMIMDTLGALALATEPPHEGLMQRPP 874
N+ +V F+ A + L VQLLWVN++ D L A AL PP +M RPP
Sbjct: 766 SNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPP 820
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 293 bits (749), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 242/836 (28%), Positives = 388/836 (46%), Gaps = 89/836 (10%)
Query: 112 KAVESRGGVEGLAREVSVSLPDGVASEEVSNRQNVYGFNRYAEKPARSFWMFVWEALHDL 171
+A S+ E LA VS G+ ++V YG N + +S W V E DL
Sbjct: 3 EAAHSKSTEECLAY-FGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDL 61
Query: 172 TLIILMICAAVSIGVGIPTEGWPDGVYDXXXXXXXXXXXXXXTAVSDYKQSLQFKALD-- 229
+ IL++ A +S + EG + + V +++ A++
Sbjct: 62 LVRILLLAACISFVLAWFEEG-EETITAFVEPFVILLILIANAIVGVWQERNAENAIEAL 120
Query: 230 KEKKNLIVQVTRDGYR--KKLSIYDLVVGDIVHLSIGDQVPADGILIS--GYSLTIDESS 285
KE + + +V R + +++ D+V GDIV +++GD+VPAD ++S +L +D+S
Sbjct: 121 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSI 180
Query: 286 LSGE-------TEPV----HINRDRP-FLLSGTKVQDGSGKMLVTSVGMRTEWGRLMVTL 333
L+GE TEPV +N+D+ L SGT + G +V + G+ TE G++ +
Sbjct: 181 LTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 240
Query: 334 SEGGEDETPLQVKLNGVATVIGKIGXXXXXXXXXXXXXXXXXEKAQHHQIKHWSSIDAMK 393
+ +D+TPLQ KL+ + K+ + H S
Sbjct: 241 AATEQDKTPLQQKLDEFGEQLSKV-------ISLICVAVWLINIGHFNDPVHGGSW-IRG 292
Query: 394 LLNYFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTD 453
+ YF PEGLP +T LA +++ A+VR L + ET+G S IC+D
Sbjct: 293 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSD 352
Query: 454 KTGTLTTNHMVVTKLWICN---------------------EAKTIKSGDNEKLLKPSVSD 492
KTGTLTTN M V K++I + E + +K N+K ++ D
Sbjct: 353 KTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLK---NDKPIRSGQFD 409
Query: 493 AVFNIFLQSIFQNTGSEVVKDKDGRTNILGTPTERAILEFGLILGGDSTFHREESAIVKV 552
+ + N S + G +G TE A+ + +T R S + +
Sbjct: 410 GLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERA 469
Query: 553 EPFNSV----------------KKRMSVLVSLPNNG----GFRVFCKGASEIILNMCDKI 592
NSV +K MSV S + G ++F KGA E +++ C+
Sbjct: 470 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-Y 528
Query: 593 INADGKAVPISEEQRKNLTNVIN--GFSSEALRTLCLAFQDIKGNHKAESIP-------- 642
+ VP++ ++ + +VI G + LR L LA +D + +
Sbjct: 529 VRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEY 588
Query: 643 ENNYTLIAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTD--- 699
E + T + VVG+ DP R V +++ C AGI V M+TGDN TA AI + GI +
Sbjct: 589 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE 648
Query: 700 -GGLAIEGTDFRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTN 758
A G +F E +E + AR P+ K +V L++ + E+ A+TG+G N
Sbjct: 649 VADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVN 707
Query: 759 DAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSVYINIQKFVQFQL 818
DAPAL +A+IG+AMG +GT VAK +++++ DDNF+TIV GR++Y N+++F+++ +
Sbjct: 708 DAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 766
Query: 819 TVNIVALVINFVAACITGSAPLTAVQLLWVNMIMDTLGALALATEPPHEGLMQRPP 874
+ N+ +V F+ A + L VQLLWVN++ D L A AL PP +M RPP
Sbjct: 767 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPP 822
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 293 bits (749), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 242/836 (28%), Positives = 388/836 (46%), Gaps = 89/836 (10%)
Query: 112 KAVESRGGVEGLAREVSVSLPDGVASEEVSNRQNVYGFNRYAEKPARSFWMFVWEALHDL 171
+A S+ E LA VS G+ ++V YG N + +S W V E DL
Sbjct: 2 EAAHSKSTEECLAY-FGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDL 60
Query: 172 TLIILMICAAVSIGVGIPTEGWPDGVYDXXXXXXXXXXXXXXTAVSDYKQSLQFKALD-- 229
+ IL++ A +S + EG + + V +++ A++
Sbjct: 61 LVRILLLAACISFVLAWFEEG-EETITAFVEPFVILLILIANAIVGVWQERNAENAIEAL 119
Query: 230 KEKKNLIVQVTRDGYR--KKLSIYDLVVGDIVHLSIGDQVPADGILIS--GYSLTIDESS 285
KE + + +V R + +++ D+V GDIV +++GD+VPAD ++S +L +D+S
Sbjct: 120 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSI 179
Query: 286 LSGE-------TEPV----HINRDRP-FLLSGTKVQDGSGKMLVTSVGMRTEWGRLMVTL 333
L+GE TEPV +N+D+ L SGT + G +V + G+ TE G++ +
Sbjct: 180 LTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 239
Query: 334 SEGGEDETPLQVKLNGVATVIGKIGXXXXXXXXXXXXXXXXXEKAQHHQIKHWSSIDAMK 393
+ +D+TPLQ KL+ + K+ + H S
Sbjct: 240 AATEQDKTPLQQKLDEFGEQLSKV-------ISLICVAVWLINIGHFNDPVHGGSW-IRG 291
Query: 394 LLNYFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTD 453
+ YF PEGLP +T LA +++ A+VR L + ET+G S IC+D
Sbjct: 292 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSD 351
Query: 454 KTGTLTTNHMVVTKLWICN---------------------EAKTIKSGDNEKLLKPSVSD 492
KTGTLTTN M V K++I + E + +K N+K ++ D
Sbjct: 352 KTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLK---NDKPIRSGQFD 408
Query: 493 AVFNIFLQSIFQNTGSEVVKDKDGRTNILGTPTERAILEFGLILGGDSTFHREESAIVKV 552
+ + N S + G +G TE A+ + +T R S + +
Sbjct: 409 GLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERA 468
Query: 553 EPFNSV----------------KKRMSVLVSLPNNG----GFRVFCKGASEIILNMCDKI 592
NSV +K MSV S + G ++F KGA E +++ C+
Sbjct: 469 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-Y 527
Query: 593 INADGKAVPISEEQRKNLTNVIN--GFSSEALRTLCLAFQDIKGNHKAESIP-------- 642
+ VP++ ++ + +VI G + LR L LA +D + +
Sbjct: 528 VRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEY 587
Query: 643 ENNYTLIAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTD--- 699
E + T + VVG+ DP R V +++ C AGI V M+TGDN TA AI + GI +
Sbjct: 588 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE 647
Query: 700 -GGLAIEGTDFRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTN 758
A G +F E +E + AR P+ K +V L++ + E+ A+TG+G N
Sbjct: 648 VADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVN 706
Query: 759 DAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSVYINIQKFVQFQL 818
DAPAL +A+IG+AMG +GT VAK +++++ DDNF+TIV GR++Y N+++F+++ +
Sbjct: 707 DAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 819 TVNIVALVINFVAACITGSAPLTAVQLLWVNMIMDTLGALALATEPPHEGLMQRPP 874
+ N+ +V F+ A + L VQLLWVN++ D L A AL PP +M RPP
Sbjct: 766 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPP 821
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 290 bits (742), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 241/836 (28%), Positives = 387/836 (46%), Gaps = 89/836 (10%)
Query: 112 KAVESRGGVEGLAREVSVSLPDGVASEEVSNRQNVYGFNRYAEKPARSFWMFVWEALHDL 171
+A S+ E LA VS G+ ++V YG N + +S W V E DL
Sbjct: 2 EAAHSKSTEECLAY-FGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDL 60
Query: 172 TLIILMICAAVSIGVGIPTEGWPDGVYDXXXXXXXXXXXXXXTAVSDYKQSLQFKALD-- 229
+ IL++ A +S + EG + + V +++ A++
Sbjct: 61 LVRILLLAACISFVLAWFEEG-EETITAFVEPFVILLILIANAIVGVWQERNAENAIEAL 119
Query: 230 KEKKNLIVQVTRDGYR--KKLSIYDLVVGDIVHLSIGDQVPADGILIS--GYSLTIDESS 285
KE + + +V R + +++ D+V GDIV +++GD+VPAD ++S +L +D+S
Sbjct: 120 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSI 179
Query: 286 LSGE-------TEPV----HINRDRP-FLLSGTKVQDGSGKMLVTSVGMRTEWGRLMVTL 333
L+GE TEPV +N+D+ L SGT + G +V + G+ TE G++ +
Sbjct: 180 LTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 239
Query: 334 SEGGEDETPLQVKLNGVATVIGKIGXXXXXXXXXXXXXXXXXEKAQHHQIKHWSSIDAMK 393
+ +D+TPLQ KL+ + K+ + H S
Sbjct: 240 AATEQDKTPLQQKLDEFGEQLSKV-------ISLICVAVWLINIGHFNDPVHGGSW-IRG 291
Query: 394 LLNYFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTD 453
+ YF PEGLP +T LA +++ A+VR L + ET+G S IC+
Sbjct: 292 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSX 351
Query: 454 KTGTLTTNHMVVTKLWICN---------------------EAKTIKSGDNEKLLKPSVSD 492
KTGTLTTN M V K++I + E + +K N+K ++ D
Sbjct: 352 KTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLK---NDKPIRSGQFD 408
Query: 493 AVFNIFLQSIFQNTGSEVVKDKDGRTNILGTPTERAILEFGLILGGDSTFHREESAIVKV 552
+ + N S + G +G TE A+ + +T R S + +
Sbjct: 409 GLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERA 468
Query: 553 EPFNSV----------------KKRMSVLVSLPNNG----GFRVFCKGASEIILNMCDKI 592
NSV +K MSV S + G ++F KGA E +++ C+
Sbjct: 469 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-Y 527
Query: 593 INADGKAVPISEEQRKNLTNVIN--GFSSEALRTLCLAFQDIKGNHKAESIP-------- 642
+ VP++ ++ + +VI G + LR L LA +D + +
Sbjct: 528 VRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEY 587
Query: 643 ENNYTLIAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTD--- 699
E + T + VVG+ DP R V +++ C AGI V M+TGDN TA AI + GI +
Sbjct: 588 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE 647
Query: 700 -GGLAIEGTDFRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTN 758
A G +F E +E + AR P+ K +V L++ + E+ A+TG+G N
Sbjct: 648 VADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVN 706
Query: 759 DAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSVYINIQKFVQFQL 818
DAPAL +A+IG+AMG +GT VAK +++++ DDNF+TIV GR++Y N+++F+++ +
Sbjct: 707 DAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 819 TVNIVALVINFVAACITGSAPLTAVQLLWVNMIMDTLGALALATEPPHEGLMQRPP 874
+ N+ +V F+ A + L VQLLWVN++ D L A AL PP +M RPP
Sbjct: 766 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPP 821
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 209/716 (29%), Positives = 341/716 (47%), Gaps = 77/716 (10%)
Query: 214 TAVSDYKQSLQFKALDKEKKNLIVQ---VTRDGYRKKLSIYDLVVGDIVHLSIGDQVPAD 270
T Y Q + + KNL+ Q V RDG + +++ LVVGD+V + GD+VPAD
Sbjct: 153 TGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPAD 212
Query: 271 GILISGYSLTIDESSLSGETEP-------VHIN--RDRPFLLSGTKVQDGSGKMLVTSVG 321
++ +D SSL+GE+EP H + R T +G+ + LV + G
Sbjct: 213 IRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTG 272
Query: 322 MRTEWGRLMVTLSEGGEDE-TPLQVKLNGVATVIGKIGXXXXXXXXXXXXXXXXXEKAQH 380
RT GR+ +L+ G E+E TP+ +++ +I + A
Sbjct: 273 DRTIIGRI-ASLASGVENEKTPIAIEIEHFVDIIAGLAILF---------------GATF 316
Query: 381 HQIKHWSSIDAMKLLNYFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKLMNDKALVRHLSA 440
+ ++ + +F PEGL VT+ L+ K+L + +V++L A
Sbjct: 317 FIVAMCIGYTFLRAMVFFMAIVVAYV---PEGLLATVTVCLSLTAKRLASKNCVVKNLEA 373
Query: 441 CETMGSASCICTDKTGTLTTNHMVVTKLWICNEAKTIKSGDNEKLLKPSVSDAVFNIFLQ 500
ET+GS S IC+DKTGTLT N M V+ LW N + + +++ S + +
Sbjct: 374 VETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCR 433
Query: 501 SIFQNTGSEVVKDKDG----RTNILGTPTERAILEFGLILGGDSTFHREESAIVKVEPFN 556
+ + +D + ++G +E A+L+F + G++ +RE V PFN
Sbjct: 434 VLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFN 493
Query: 557 SVKKRMSVLVSL--PNNGGFRVFCKGASEIILNMCDKIINADGKAVPISEEQRKNLTNV- 613
S K + +L P + + KGA E +L C I+ G+ +P+ E+ R+
Sbjct: 494 STNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSIL-IKGQELPLDEQWREAFQTAY 552
Query: 614 --INGFSSEALR--TLCLAFQDIKGNH----KAESIPENNYTLIAVVGIKDPVRPGVREA 665
+ G L L L+ +D + +A + P + + +V + DP R V +A
Sbjct: 553 LSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDA 612
Query: 666 VETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIE-------------------- 705
V C AGI V MVTGD+ TAKAIA GI+++G +E
Sbjct: 613 VLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARA 672
Query: 706 ----GTDFRSKNPQEMQELI---PKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTN 758
G + +P E+ E + P++ V AR+SP K ++V + + +VAVTG+G N
Sbjct: 673 CVINGMQLKDMDPSELVEALRTHPEM-VFARTSPQQKLVIVESCQRL-GAIVAVTGDGVN 730
Query: 759 DAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSVYINIQKFVQFQL 818
D+PAL +ADIG+AMGIAG++ AK AD+I++DDNF +IVT GR ++ N++K + + L
Sbjct: 731 DSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTL 790
Query: 819 TVNIVALVINFVAACITGSAPLTAVQLLWVNMIMDTLGALALATEPPHEGLMQRPP 874
T NI L + ++ PL + +L++ + D +++LA E +M P
Sbjct: 791 TKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRP 846
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 265 bits (677), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 236/846 (27%), Positives = 375/846 (44%), Gaps = 99/846 (11%)
Query: 85 KLSQETLLAGYGIEPDELESIVRSHNSKAVESRGGVEGLAREVSVSL-PDGVASEEVSNR 143
+L +E + + + DEL + S+ + E LAR+ +L P E V
Sbjct: 9 ELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFC 68
Query: 144 QNVYGFNRYAEKPARSFWMFVWEALHDLTLIILMICAAVSIGVGIPTEGWPDGVYDXXXX 203
+ ++G F M +W I I ++ G+ TE P D
Sbjct: 69 RQLFG----------GFSMLLW---------IGAILCFLAYGIQAATEEEPQN--DNLYL 107
Query: 204 XXXXXXXXXXTAVSDYKQSLQFKALDKEKKNLIVQ---VTRDGYRKKLSIYDLVVGDIVH 260
T Y Q + + + KN++ Q V R+G + ++ ++VVGD+V
Sbjct: 108 GVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVE 167
Query: 261 LSIGDQVPADGILISGYSLTIDESSLSGETEPVHINRD---------RPFLLSGTKVQDG 311
+ GD++PAD +IS +D SSL+GE+EP + D R T +G
Sbjct: 168 VKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEG 227
Query: 312 SGKMLVTSVGMRTEWGRLMVTLSEGGED-ETPLQVKLNGVATVIGKIGXXXXXXXXXXXX 370
+ + +V G RT GR+ TL+ G E +TP+ ++ +I +
Sbjct: 228 TARGIVVYTGDRTVMGRI-ATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSL 286
Query: 371 XXXXXEKAQHHQIKHWSSIDAMKLLNYFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKLMN 430
I ++ ++A+ L PEGL VT+ L K++
Sbjct: 287 ------------ILEYTWLEAVIFL------IGIIVANVPEGLLATVTVCLTLTAKRMAR 328
Query: 431 DKALVRHLSACETMGSASCICTDKTGTLTTNHMVVTKLWICNEAKTIKSGDNEKLLKPSV 490
LV++L A ET+GS S IC+DKTGTLT N M V +W N+ + +N+ +
Sbjct: 329 KNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDK 388
Query: 491 SDAVFNIFLQSIFQNTGSEVVKDKDGRTNIL-----GTPTERAILEFGLILGGDSTFHRE 545
+ A + + L I V + IL G +E A+L+ + G RE
Sbjct: 389 TSATW-LALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRE 447
Query: 546 ESAIVKVEPFNSVKKRMSVLVSLPNNGGFR--VFCKGASEIILNMCDKIINADGKAVPIS 603
+ PFNS K + PN R + KGA E IL+ C I+ GK P+
Sbjct: 448 RYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSIL-IHGKEQPLD 506
Query: 604 EEQRKNLTNV---INGFSSEALRTLCLAFQD------IKGNHKAESIPENNYTLIAVVGI 654
EE + N + G L L D + + + P +N + ++ +
Sbjct: 507 EELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISM 566
Query: 655 KDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIE--------- 705
DP R V +AV C +AGI V MVTGD+ TAKAIAK GI+++G +E
Sbjct: 567 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIP 626
Query: 706 ---------------GTDFRSKNPQEMQELIPKLQ--VMARSSPTDKYILVTQLRNVFKE 748
G+D + +++ +++ V AR+SP K I+V +
Sbjct: 627 VSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQ-GA 685
Query: 749 VVAVTGNGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSVYI 808
+VAVTG+G ND+PA +ADIG+AMGIAG++V+K+ AD+I++DDNF +IVT GR ++
Sbjct: 686 IVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFD 745
Query: 809 NIQKFVQFQLTVNIVALVINFVAACITGSAPLTAVQLLWVNMIMDTLGALALATEPPHEG 868
N++K + + LT NI + + PL V +L +++ D + A++LA E
Sbjct: 746 NLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESD 805
Query: 869 LMQRPP 874
+M+R P
Sbjct: 806 IMKRQP 811
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 262 bits (670), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 233/848 (27%), Positives = 376/848 (44%), Gaps = 103/848 (12%)
Query: 85 KLSQETLLAGYGIEPDELESIVRSHNSKAVESRGGVEGLAREVSVSL-PDGVASEEVSNR 143
+L +E + + + DEL + S+ + E LAR+ +L P E V
Sbjct: 3 ELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFC 62
Query: 144 QNVYGFNRYAEKPARSFWMFVWEALHDLTLIILMICAAVSIGVGIPTEGWPDGVYDXXXX 203
+ ++G F M +W I I ++ G+ TE P D
Sbjct: 63 RQLFG----------GFSMLLW---------IGAILCFLAYGIQAATEEEPQN--DNLYL 101
Query: 204 XXXXXXXXXXTAVSDYKQSLQFKALDKEKKNLIVQ---VTRDGYRKKLSIYDLVVGDIVH 260
T Y Q + + + KN++ Q V R+G + ++ ++VVGD+V
Sbjct: 102 GVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVE 161
Query: 261 LSIGDQVPADGILISGYSLTIDESSLSGETEPVHINRD---------RPFLLSGTKVQDG 311
+ GD++PAD +IS +D SSL+GE+EP + D R T +G
Sbjct: 162 VKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEG 221
Query: 312 SGKMLVTSVGMRTEWGRLMVTLSEGGED-ETPLQVKLNGVATVIGKIGXXXXXXXXXXXX 370
+ + +V G RT GR+ TL+ G E +TP+ ++ +I +
Sbjct: 222 TARGIVVYTGDRTVMGRI-ATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSL 280
Query: 371 XXXXXEKAQHHQIKHWSSIDAMKLLNYFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKLMN 430
I ++ ++A+ L PEGL VT+ L K++
Sbjct: 281 ------------ILEYTWLEAVIFL------IGIIVANVPEGLLATVTVCLTLTAKRMAR 322
Query: 431 DKALVRHLSACETMGSASCICTDKTGTLTTNHMVVTKLWICNEAKTIKSGDNEKLLKPSV 490
LV++L A ET+GS S IC+ KTGTLT N M V +W N+ + +N+ +
Sbjct: 323 KNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDK 382
Query: 491 SDAVF-------NIFLQSIFQNTGSEVVKDKDGRTNILGTPTERAILEFGLILGGDSTFH 543
+ A + + +++FQ + K + G +E A+L+ + G
Sbjct: 383 TSATWLALSRIAGLCNRAVFQANQENLPILKRA---VAGDASESALLKCIELCCGSVKEM 439
Query: 544 REESAIVKVEPFNSVKKRMSVLVSLPNNGGFR--VFCKGASEIILNMCDKIINADGKAVP 601
RE + PFNS K + PN R + KGA E IL+ C I+ GK P
Sbjct: 440 RERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSIL-IHGKEQP 498
Query: 602 ISEEQRKNLTNV---INGFSSEALRTLCLAFQD------IKGNHKAESIPENNYTLIAVV 652
+ EE + N + G L L D + + + P +N + ++
Sbjct: 499 LDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLI 558
Query: 653 GIKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIE------- 705
+ DP R V +AV C +AGI V MVTGD+ TAKAIAK GI+++G +E
Sbjct: 559 SMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLN 618
Query: 706 -----------------GTDFRSKNPQEMQELIPKLQ--VMARSSPTDKYILVTQLRNVF 746
G+D + +++ +++ V AR+SP K I+V +
Sbjct: 619 IPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQ- 677
Query: 747 KEVVAVTGNGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSV 806
+VAVTG+G ND+PA +ADIG+AMGIAG++V+K+ AD+I++DDNF +IVT GR +
Sbjct: 678 GAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLI 737
Query: 807 YINIQKFVQFQLTVNIVALVINFVAACITGSAPLTAVQLLWVNMIMDTLGALALATEPPH 866
+ N++K + + LT NI + + PL V +L +++ D + A++LA E
Sbjct: 738 FDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAE 797
Query: 867 EGLMQRPP 874
+M+R P
Sbjct: 798 SDIMKRQP 805
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 236/855 (27%), Positives = 385/855 (45%), Gaps = 117/855 (13%)
Query: 85 KLSQETLLAGYGIEPDELESIVRSHNSKAVESRGGVEGLAREVSVSL-PDGVASEEVSNR 143
+L +E + + + DEL + + ++ + + E LAR+ SL P E +
Sbjct: 39 ELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFC 98
Query: 144 QNVYGFNRYAEKPARSFWMFVWEALHDLTLIILMICAAVSIGVGIPTEGWPDGVYDXXXX 203
+ ++G F + +W I I ++ G+ TE P D
Sbjct: 99 RQLFG----------GFSILLW---------IGAILCFLAYGIQAATEDEP--ANDNLYL 137
Query: 204 XXXXXXXXXXTAVSDYKQSLQFKALDKEKKNLIVQ---VTRDGYRKKLSIYDLVVGDIVH 260
T Y Q + + KN++ Q V RDG + ++ +V GD+V
Sbjct: 138 GVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVE 197
Query: 261 LSIGDQVPADGILISGYSLTIDESSLSGETEPVHINRD---------RPFLLSGTKVQDG 311
+ GD++PAD +IS + +D SSL+GE+EP + + R T +G
Sbjct: 198 VKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEG 257
Query: 312 SGKMLVTSVGMRTEWGRLMVTLSEGGE-DETPL-------QVKLNGVATVIGKIGXXXXX 363
+ + +V G RT GR+ TL+ G E TP+ + GVA +G
Sbjct: 258 TARGVVVYTGDRTVMGRI-ATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSL 316
Query: 364 XXXXXXXXXXXXEKAQHHQIKHWSSIDAMKLLNYFXXXXXXXXXXXPEGLPLAVTLSLAF 423
I +S ++A+ L PEGL VT+ L
Sbjct: 317 -------------------ILGYSWLEAVIFL------IGIIVANVPEGLLATVTVCLTL 351
Query: 424 AMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVTKLWICN---EAKTIKSG 480
K++ LV++L A ET+GS S IC+DKTGTLT N M V +W N EA T ++
Sbjct: 352 TAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQ 411
Query: 481 DNEKLLKPSVSDAVFN----IFLQSIFQNTGSEVVKDKDGRTNILGTPTERAILEFGLIL 536
K S + + + + +++FQ V K ++ G +E A+L+ +
Sbjct: 412 SGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPILK---RSVAGDASESALLKCIELC 468
Query: 537 GGDSTFHREESAIVKVEPFNSVKK-RMSVLVSLPNNGG-FRVFCKGASEIILNMCDKIIN 594
G R+ + + PFNS K ++S+ + ++ + + KGA E IL+ C I+
Sbjct: 469 CGSVQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTIL- 527
Query: 595 ADGKAVPISEEQRKNLTNV---INGFSSEALRTLCLAFQDIKGNH------KAESIPENN 645
+G P+ E+ ++ N + G L A + K N + P +
Sbjct: 528 LNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFDADEPNFPTTD 587
Query: 646 YTLIAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIE 705
+ ++ + DP R V +AV C +AGI V MVTGD+ TAKAIAK GI+++G IE
Sbjct: 588 LCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIE 647
Query: 706 ------------------------GTDFRSKNPQEMQELIPKLQ--VMARSSPTDKYILV 739
G+D + + + + +++ V AR+SP K I+V
Sbjct: 648 DIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIV 707
Query: 740 TQLRNVFKEVVAVTGNGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTV 799
+ +VAVTG+G ND+PAL +ADIG+AMGI+G++V+K+ AD+I++DDNF +IVT
Sbjct: 708 EGCQRQ-GAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTG 766
Query: 800 ARWGRSVYINIQKFVQFQLTVNIVALVINFVAACITGSAPLTAVQLLWVNMIMDTLGALA 859
GR ++ N++K + + LT NI + V PL V +L +++ D + A++
Sbjct: 767 VEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAIS 826
Query: 860 LATEPPHEGLMQRPP 874
LA E +M+R P
Sbjct: 827 LAYEQAESDIMKRQP 841
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 155/623 (24%), Positives = 278/623 (44%), Gaps = 78/623 (12%)
Query: 238 QVTRDGYRKKLSIYDLVVGDIVHLSIGDQVPADGILISGYSLTIDESSLSGETEPV--HI 295
+V RDG + LV GDIV + +GD +PAD L+ G L +D+S+L+GE+ PV H
Sbjct: 133 KVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHP 192
Query: 296 NRDRPFLLSGTKVQDGSGKMLVTSVGMRTEWGRLMVTLSEGGEDETPLQVKLNGVATVIG 355
++ + SG+ + G + +V + G+ T +G+ + D T V T IG
Sbjct: 193 GQE---VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-----DSTNQVGHFQKVLTAIG 244
Query: 356 KIGXXXXXXXXXXXXXXXXXEKAQHHQIKHWSSIDAMKLLNYFXXXXXXXXXXXPEGLPL 415
+ + K+ ID + +L P +P
Sbjct: 245 NFCICSIAIGMVIEIIVMYPIQRR----KYRDGIDNLLVL---------LIGGIPIAMPT 291
Query: 416 AVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVTKLWICNEAK 475
+++++A +L A+ + ++A E M +C+DKTGTLT N + V K + K
Sbjct: 292 VLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCK 351
Query: 476 TIKSGDNEKLLKPSVSDAVFNIFLQSIFQNTGSEVVKD-KDGRTNILGTPTERAILEFGL 534
++ ++ LL +++ V N Q ++ D K+ R I
Sbjct: 352 GVEK--DQVLLFAAMASRVEN---QDAIDAAMVGMLADPKEARAGI-------------- 392
Query: 535 ILGGDSTFHREESAIVKVEPFNSVKKRMSVLVSLPNNGGFRVFCKGASEIILNMCDKIIN 594
RE V PFN V KR + L + +G + KGA E IL +
Sbjct: 393 ---------RE----VHFLPFNPVDKR-TALTYIDGSGNWHRVSKGAPEQILELAKA--- 435
Query: 595 ADGKAVPISEEQRKNLTNVINGFSSEALRTLCLAFQDIKGNHKAESIPENNYTLIAVVGI 654
S + K + ++I+ ++ LR+L +A Q + K + P + + ++ +
Sbjct: 436 --------SNDLSKKVLSIIDKYAERGLRSLAVARQVVP--EKTKESPGAPWEFVGLLPL 485
Query: 655 KDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTD--GGLAIEGTDFRSK 712
DP R E + L G+ V+M+TGD + K + G+ T+ A+ GT +
Sbjct: 486 FDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTH-KDA 544
Query: 713 NPQEM--QELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEADIGL 770
N + +ELI K A P KY +V +L+ K +V +TG+G NDAPAL +ADIG+
Sbjct: 545 NLASIPVEELIEKADGFAGVFPEHKYEIVKKLQER-KHIVGMTGDGVNDAPALKKADIGI 603
Query: 771 AMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSVYINIQKFVQFQLTVNIVALVINFV 830
A+ A T+ A+ +D+++ + + I++ R+++ ++ + + +++ I +V F+
Sbjct: 604 AVADA-TDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITI-RIVFGFM 661
Query: 831 AACITGSAPLTAVQLLWVNMIMD 853
+ +A +L + ++ D
Sbjct: 662 LIALIWEFDFSAFMVLIIAILND 684
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 189/813 (23%), Positives = 355/813 (43%), Gaps = 108/813 (13%)
Query: 134 GVASEEVSNRQNVYGFNRYAEKPARSFWMFVWEALHDLTLIILMICAAVSIGVGIPTEGW 193
G+ SEEV R+ YG N+ E+ F F+ + + + M AAV + G+ E W
Sbjct: 87 GLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFV--MEGAAV-LAAGL--EDW 141
Query: 194 PD-GVYDXXXXXXXXXXXXXXTAVSDYKQSLQFKAL-DKEKKNLIVQ--VTRDGYRKKLS 249
D GV AV + Q Q ++ D+ KK L ++ V RDG K++
Sbjct: 142 VDFGV---------ICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIE 192
Query: 250 IYDLVVGDIVHLSIGDQVPADGILISGYS-LTIDESSLSGETEPVHINR-DRPFLLSGTK 307
++V GDI+ + G +PADG +++ + L +D+S+L+GE+ V ++ D+ F + +
Sbjct: 193 APEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVF--ASSA 250
Query: 308 VQDGSGKMLVTSVGMRTEWGRLMVTLSEGGEDETPLQVKLNGVATVIGKIGXXXXXXXXX 367
V+ G +++T+ G T GR ++ LNG+ T++ +
Sbjct: 251 VKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWV 310
Query: 368 XXXXXXXXEKAQHHQIKHWSSIDAMKLLNYFXXXXXXXXXXXPEGLPLAVTLSLAFAMKK 427
+ S +++L + P GLP VT ++A
Sbjct: 311 S---------------SFYRSNPIVQILEF---TLAITIIGVPVGLPAVVTTTMAVGAAY 352
Query: 428 LMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVTKLWICNEAKTIKSGDNEKLLK 487
L KA+V+ LSA E++ +C+DKTGTLT N + + ++ T+ D E L+
Sbjct: 353 LAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSL------HDPYTVAGVDPEDLM- 405
Query: 488 PSVSDAVFNIFLQSIFQNTGSEVVKDKDGRTNILGTPTERAILEFGLILGGDSTFHREES 547
L + + G + + DK ++ P +++L +
Sbjct: 406 -------LTACLAASRKKKGIDAI-DKAFLKSLKYYPRAKSVLS--------------KY 443
Query: 548 AIVKVEPFNSVKKRMSVLVSLPNNGGFRVFC-KGASEIILNMCDKIINADGKAVPISEEQ 606
+++ PF+ V K++ +V P G R+ C KGA +L K + D PI EE
Sbjct: 444 KVLQFHPFDPVSKKVVAVVESPQ--GERITCVKGAPLFVL----KTVEEDH---PIPEEV 494
Query: 607 RKNLTNVINGFSSEALRTLCLAFQDIKGNHKAESIPENNYTLIAVVGIKDPVRPGVREAV 666
+ N + F++ R+L +A + +G E ++ ++ ++ DP R + V
Sbjct: 495 DQAYKNKVAEFATRGFRSLGVARK--RG--------EGSWEILGIMPCMDPPRHDTYKTV 544
Query: 667 ETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIEGTDFRSKN--PQEMQELIPKL 724
G++++M+TGD + A+ +++ G+ T+ A + E+ + +
Sbjct: 545 CEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAA 604
Query: 725 QVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEADIGLAMGIAGTEVAKENA 784
A P KY +V L+ +VA+TG+G NDAP+L +AD G+A+ ++ A+ A
Sbjct: 605 DGFAEVFPQHKYNVVEILQQR-GYLVAMTGDGVNDAPSLKKADTGIAVE-GSSDAARSAA 662
Query: 785 DVIIMDDNFTTIVTVARWGRSVYINIQKFVQFQLTVNI-VALVINFVAACITGSAPLTAV 843
D++ + I+ + R ++ + +V +++ ++I + + + A + S + V
Sbjct: 663 DIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAILNRSLNIELV 722
Query: 844 QLLWVNMIMDTLGALALATEPPHEGLMQRPPIGRNVHFITVTMWRNIIGQSIYQIIVLGV 903
+ + + TL A+A P + P+ N+ +W G S+ +VL V
Sbjct: 723 VFIAIFADVATL-AIAYDNAP-----YSQTPVKWNLP----KLW----GMSVLLGVVLAV 768
Query: 904 LTFCGKKILKLSGPNATLILNTFIFNSFVFCQV 936
T+ + G N ++ N + +F Q+
Sbjct: 769 GTWITVTTMYAQGENGGIVQNFGNMDEVLFLQI 801
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 30/197 (15%)
Query: 627 LAFQDIKGNHKAESIPENNYTLIAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHT 686
LA + ++ K I N + ++ + D ++ + AV+ GI V M+TGDN +
Sbjct: 505 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRS 564
Query: 687 AKAIAKECGILTDGGLAIEGTDFRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVF 746
A+AI++E + L I P + E + KLQ
Sbjct: 565 AEAISRELNL----DLVIAEV-----LPHQKSEEVKKLQA-------------------- 595
Query: 747 KEVVAVTGNGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSV 806
KEVVA G+G NDAPAL +AD+G+A+G +G++VA E+ D++++ D+ +V + R
Sbjct: 596 KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 654
Query: 807 YINIQKFVQFQLTVNIV 823
I++ + + L N++
Sbjct: 655 MSKIKQNIFWALIYNVI 671
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 100/251 (39%), Gaps = 30/251 (11%)
Query: 239 VTRDGYRKKLSIYDLVVGDIVHLSIGDQVPADGILISGYSLTIDESSLSGETEPVHINR- 297
V RDG + + ++ VGDIV + G+++P DG+++ G S +DES +SGE PV ++
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 273
Query: 298 DRPFLLSGTKVQDGSGKMLVTSVGMRTEWGRLMVTLSEGGEDETPLQVKLNG-VATVIGK 356
D F T G K+ T VG T +++ + + + P+Q + VA I
Sbjct: 274 DEVF--GATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPT 331
Query: 357 IGXXXXXXXXXXXXXXXXXEKAQHHQIKHWSSIDAMKLLNYFXXXXXXXXXXXPEGLPLA 416
+ +W I LL F P LA
Sbjct: 332 VLLVAISAFI------------------YWYFIAHAPLLFAFTTLIAVLVVACPCAFGLA 373
Query: 417 VTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVTKLWICNEAKT 476
+L M K L+++ A E + + DKTGTLT VT L N
Sbjct: 374 TPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN---- 429
Query: 477 IKSGDNEKLLK 487
GD +LL+
Sbjct: 430 ---GDERELLR 437
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 30/197 (15%)
Query: 627 LAFQDIKGNHKAESIPENNYTLIAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHT 686
LA + ++ K I N + ++ + D ++ + AV+ GI V M+TGDN +
Sbjct: 427 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRS 486
Query: 687 AKAIAKECGILTDGGLAIEGTDFRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVF 746
A+AI++E + L I P + E + KLQ
Sbjct: 487 AEAISRELNL----DLVIAEV-----LPHQKSEEVKKLQA-------------------- 517
Query: 747 KEVVAVTGNGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSV 806
KEVVA G+G NDAPAL +AD+G+A+G +G++VA E+ D++++ D+ +V + R
Sbjct: 518 KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 576
Query: 807 YINIQKFVQFQLTVNIV 823
I++ + + L N++
Sbjct: 577 MSKIKQNIFWALIYNVI 593
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 100/251 (39%), Gaps = 30/251 (11%)
Query: 239 VTRDGYRKKLSIYDLVVGDIVHLSIGDQVPADGILISGYSLTIDESSLSGETEPVHINR- 297
V RDG + + ++ VGDIV + G+++P DG+++ G S +DES +SGE PV ++
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 195
Query: 298 DRPFLLSGTKVQDGSGKMLVTSVGMRTEWGRLMVTLSEGGEDETPLQVKLNG-VATVIGK 356
D F T G K+ T VG T +++ + + + P+Q + VA I
Sbjct: 196 DEVF--GATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPT 253
Query: 357 IGXXXXXXXXXXXXXXXXXEKAQHHQIKHWSSIDAMKLLNYFXXXXXXXXXXXPEGLPLA 416
+ +W I LL F P LA
Sbjct: 254 VLLVAISAFI------------------YWYFIAHAPLLFAFTTLIAVLVVACPCAFGLA 295
Query: 417 VTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVTKLWICNEAKT 476
+L M K L+++ A E + + DKTGTLT VT L N
Sbjct: 296 TPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN---- 351
Query: 477 IKSGDNEKLLK 487
GD +LL+
Sbjct: 352 ---GDERELLR 359
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 39/213 (18%)
Query: 608 KNLTNVINGFSSEALRTLCLAFQDIKGNHKAESIPENNYTLI---------AVVGIKDPV 658
K + ++NG + + IK + E + + T++ V+ + D +
Sbjct: 86 KGVEGIVNGRRYMVVSPGYIRELGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRI 145
Query: 659 RPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIEGTDFRSKNPQEMQ 718
RP REA+ A GI M+TGDN AK +A+E G+ F P E
Sbjct: 146 RPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL---------DDYFAEVLPHEKA 196
Query: 719 ELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEADIGLAMGIAGTE 778
E + ++Q KY V A+ G+G NDAPAL +AD+G+A+G AGT+
Sbjct: 197 EKVKEVQ--------QKY------------VTAMVGDGVNDAPALAQADVGIAIG-AGTD 235
Query: 779 VAKENADVIIMDDNFTTIVTVARWGRSVYINIQ 811
VA E AD++++ ++ + + R Y ++
Sbjct: 236 VAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 29/177 (16%)
Query: 649 IAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIEGTD 708
+A++ ++DP++ E + +GI + M+TGD+ TA+A+A GI
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK----------- 594
Query: 709 FRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEADI 768
+V+A P DK +V++L++ +VA+ G+G NDAPAL +ADI
Sbjct: 595 ----------------KVVAEIMPEDKSRIVSELKD-KGLIVAMAGDGVNDAPALAKADI 637
Query: 769 GLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSVYINIQKFVQFQLTVNIVAL 825
G+AMG GT+VA E+A V ++ + I R S NI++ + F N++ +
Sbjct: 638 GIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNVLGV 693
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 20/232 (8%)
Query: 238 QVTRDGYRKKLSIYDLVVGDIVHLSIGDQVPADGILISGYSLTIDESSLSGETEPVHINR 297
++ DG +++S+ ++ VGD++ + G+++P DG + G S +DES ++GE PV
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPV-AKE 286
Query: 298 DRPFLLSGTKVQDGSGKMLVTSVGMRTEWGRLMVTLSEGGEDETPLQVKLNGVATVIGKI 357
++ T Q GS M VG T R++ +S+ P+Q + TV G
Sbjct: 287 ASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLAD---TVSGWF 343
Query: 358 GXXXXXXXXXXXXXXXXXEKAQHHQIKHWSSIDAMKLLNY-FXXXXXXXXXXXPEGLPLA 416
W+ + L+Y P L LA
Sbjct: 344 VPAVILVAVLSFIV--------------WALLGPQPALSYGLIAAVSVLIIACPCALGLA 389
Query: 417 VTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVTKL 468
+S+ + K L+++ A E M + + DKTGTLT H +T++
Sbjct: 390 TPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRI 441
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 39/209 (18%)
Query: 608 KNLTNVINGFSSEALRTLCLAFQDIKGNHKAESIPENNYTLI---------AVVGIKDPV 658
K + ++NG + + IK + E + + T++ V+ + D +
Sbjct: 86 KGVEGIVNGRRYMVVSPGYIRELGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRI 145
Query: 659 RPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIEGTDFRSKNPQEMQ 718
RP REA+ A GI M+TGDN AK +A+E G+ F P E
Sbjct: 146 RPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL---------DDYFAEVLPHEKA 196
Query: 719 ELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEADIGLAMGIAGTE 778
E + ++Q KY V A+ G+G NDAPAL +AD+G+A+G AGT+
Sbjct: 197 EKVKEVQ--------QKY------------VTAMVGDGVNDAPALAQADVGIAIG-AGTD 235
Query: 779 VAKENADVIIMDDNFTTIVTVARWGRSVY 807
VA E AD++++ ++ + + R Y
Sbjct: 236 VAVETADIVLVRNDPRDVAAIVELSRKTY 264
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 30/185 (16%)
Query: 627 LAFQDIKGNHKAESIPENNYTLIAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHT 686
LA + ++ K I N + ++ + D ++ + AV+ GI V M+TGDN +
Sbjct: 133 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRS 192
Query: 687 AKAIAKECGILTDGGLAIEGTDFRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVF 746
A+AI++E + D V+A P K V +L+
Sbjct: 193 AEAISRELNL-----------DL----------------VIAEVLPHQKSEEVKKLQ--A 223
Query: 747 KEVVAVTGNGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSV 806
KEVVA G+G NDAPAL +AD+G+A+G +G++VA E+ D++++ D+ +V + R
Sbjct: 224 KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 282
Query: 807 YINIQ 811
I+
Sbjct: 283 MSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 30/185 (16%)
Query: 627 LAFQDIKGNHKAESIPENNYTLIAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHT 686
LA + ++ K I N + ++ + D ++ + AV+ GI V M+TGDN +
Sbjct: 133 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRS 192
Query: 687 AKAIAKECGILTDGGLAIEGTDFRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVF 746
A+AI++E + D V+A P K V +L+
Sbjct: 193 AEAISRELNL-----------DL----------------VIAEVLPHQKSEEVKKLQ--A 223
Query: 747 KEVVAVTGNGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGRSV 806
KEVVA G+G NDAPAL +AD+G+A+G +G++VA E+ D++++ D+ +V + R
Sbjct: 224 KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 282
Query: 807 YINIQ 811
I+
Sbjct: 283 MSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 30/178 (16%)
Query: 627 LAFQDIKGNHKAESIPENNYTLIAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHT 686
LA + ++ K I N + ++ + D ++ + AV+ GI V +TGDN +
Sbjct: 113 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRS 172
Query: 687 AKAIAKECGILTDGGLAIEGTDFRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVF 746
A+AI++E + L I P + E + KLQ
Sbjct: 173 AEAISRELNL----DLVIAEV-----LPHQKSEEVKKLQA-------------------- 203
Query: 747 KEVVAVTGNGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVTVARWGR 804
KEVVA G+G NDAPAL +AD+G+A+G +G++VA E+ D++++ D+ +V + R
Sbjct: 204 KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 42/145 (28%)
Query: 654 IKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIEGTDFRSKN 713
+K+ +P V+E GI V +TGDN +A+AI++E + L I
Sbjct: 23 LKESAKPAVQE----LKRXGIKVGXITGDNWRSAEAISRELNL----DLVIAEV-----L 69
Query: 714 PQEMQELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEADIGLAMG 773
P + E + KLQ KEVVA G+G NDAPAL +AD+G+A+G
Sbjct: 70 PHQKSEEVKKLQA--------------------KEVVAFVGDGINDAPALAQADLGIAVG 109
Query: 774 IAGTEVAKENADVIIMDDNFTTIVT 798
+ D++++ D+ +V
Sbjct: 110 ---------SGDIVLIRDDLRDVVA 125
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 239 VTRDGYRKKLSIYDLVVGDIVHLSIGDQVPADGILISGYSLTIDESSLSGETEPV 293
V RDG + + ++ VGDIV + G+++P DG+++ G S +DES +SGE PV
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPV 69
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 554 PFNSVKKRMSVLVSLPNNGGFRVFCKGASEIILNMCDKIINADGKAVPISEEQRKNLTNV 613
PF+ ++RMSV+V+ N ++ CKGA + ILN+C + + +G+ VP+ + + + V
Sbjct: 63 PFDFERRRMSVVVA-ENTEHHQLVCKGALQEILNVCSQ-VRHNGEIVPLDDIMLRKIKRV 120
Query: 614 INGFSSEALRTLCLA 628
+ + + LR + +A
Sbjct: 121 TDTLNRQGLRVVAVA 135
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 649 IAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIEGTD 708
IA I D RP +++ +E G+ + +++GD K ++KE I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 709 FRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEADI 768
QE L SP DK ++ +L+ +V+ + G+G NDA AL AD+
Sbjct: 176 ---------QEYYSNL------SPEDKVRIIEKLKQNGNKVLMI-GDGVNDAAALALADV 219
Query: 769 GLAMGIAGTEVAKENADVIIMDDNFTTIVTVAR 801
+AMG G +++K AD+I++ ++ T++ + +
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 649 IAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIEGTD 708
IA I D RP +++ +E G+ + +++GD K ++KE I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 709 FRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEADI 768
QE L SP DK ++ +L+ +V+ + G+G NDA AL AD+
Sbjct: 176 ---------QEYYSNL------SPEDKVRIIEKLKQNGNKVLMI-GDGVNDAAALALADV 219
Query: 769 GLAMGIAGTEVAKENADVIIMDDNFTTIVTVAR 801
+AMG G +++K AD+I++ ++ T++ + +
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 649 IAVVGIKDPVRPGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIEGTD 708
IA I D RP +++ +E G+ + +++GD K ++KE I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 709 FRSKNPQEMQELIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEADI 768
QE L SP DK ++ +L+ +V+ + G+G NDA AL AD+
Sbjct: 176 ---------QEYYSNL------SPEDKVRIIEKLKQNGNKVLMI-GDGVNDAAALALADV 219
Query: 769 GLAMGIAGTEVAKENADVIIMDDNFTTIVTVAR 801
+AMG G +++K AD+I++ ++ T++ + +
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 256 GDIVHLSIGDQVPADGILISGYSLTIDESSLSGETEPVHINRDRPFLLSGTKVQDGSGKM 315
GDI+ + G + P DG +I G+S+ +DES ++GE PV + +++G+ Q+GS +
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVA-KKPGSTVIAGSINQNGSLLI 102
Query: 316 LVTSVGMRTEWGRLMVTLSE 335
T VG T +++ + E
Sbjct: 103 CATHVGADTTLSQIVKLVEE 122
>pdb|2L1W|B Chain B, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 25
Score = 36.6 bits (83), Expect = 0.074, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 20 ALMRWRSAVRVVKNPRRRFRMVAD 43
A RWRS+V +VKN RRFRM+++
Sbjct: 1 ARQRWRSSVSIVKNRARRFRMISN 24
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 22/215 (10%)
Query: 461 NHMVVTKLWICNEAKTIKSGDNEKLLKPSVSDAVF-------NIFLQSIFQNTGSEVVKD 513
N M V +W N+ + +N+ + + A + + +++FQ +
Sbjct: 2 NPMTVAHMWFDNQIHEADTTENQSGVSFDKTSATWFALSRIAGLCNRAVFQANQENLPIL 61
Query: 514 KDGRTNILGTPTERAILEFGLILGGDSTFHREESAIVKVEPFNSVKKRMSVLVSLPNNGG 573
K + G +E A+L+ + G RE+ + PFNS K + PN
Sbjct: 62 KRA---VAGDASESALLKCIEVCCGSVMEMREKYTKIVEIPFNSTNKYQLSIHKNPNASE 118
Query: 574 FR--VFCKGASEIILNMCDKIINADGKAVPISEEQRKNLTNV---INGFSSEALRTLCLA 628
+ + KGA E IL+ C I+ GK P+ EE + N + G L L
Sbjct: 119 PKHLLVMKGAPERILDRCSSIL-LHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLL 177
Query: 629 FQD------IKGNHKAESIPENNYTLIAVVGIKDP 657
D + + + P +N + ++ + DP
Sbjct: 178 LPDEQFPEGFQFDTDEVNFPVDNLCFVGLISMIDP 212
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 606 QRKNLTNVINGFSSEALRTLCLAFQDIKGNHKAESIPENNYTLIAVVGIKDPVRPGVREA 665
+R L + + G + + L A Q G + E + I++V P+ PGVREA
Sbjct: 44 RRNELPDTL-GLRIDXVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREA 102
Query: 666 VETCLAAGITVRMVTGDNIHTAKAI 690
V C G+ V + + +H + +
Sbjct: 103 VALCKEQGLLVGLASASPLHXLEKV 127
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 660 PGVREAVETCLAAGITVRMVTGDNIHTAKAIAKECGILTDGGLAIEGTDFRSKNPQEMQE 719
PGV E ++ AAG + M T A+AIA+ G+ D L + D
Sbjct: 107 PGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGL--DTRLTVIAGD----------- 153
Query: 720 LIPKLQVMARSSP-TDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEAD---IGLAMGIA 775
+ R P D + V + + E V G+G DA A IG++ G++
Sbjct: 154 -----DSVERGKPHPDMALHVARGLGIPPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVS 208
Query: 776 G-TEVAKENADVIIMDDNFTTIVT 798
G E+ + AD ++ D+F VT
Sbjct: 209 GPDELMRAGADTVV--DSFPAAVT 230
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 720 LIPKLQVMARSSPTDKYILVTQLRNVFKEVVAVTGNGTNDAPALHEADIGLAMGIAGTEV 779
L + V S T + R E++A G+G ND P L A IG+AMG A +V
Sbjct: 184 LFADVNVAGTSKATGLSLFADYYRVKVSEIMA-CGDGGNDIPMLKAAGIGVAMGNASEKV 242
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 397 YFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKLMNDKALVRHL 438
YF PEGLP +T LA +++ A+VR L
Sbjct: 7 YFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|1JYT|A Chain A, Solution Structure Of Olfactory Marker Protein From Rat
pdb|1ZRI|A Chain A, Noe-Based Solution Structure With Dipolar Coupling
Restraints Of Rat Omp (Olfactory Marker Protein)
Length = 163
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 478 KSGDNEKLLKPSVSDAVFNIFLQSIFQNTGSEVVKDKDGRTNILGT 523
K D EKLL+P+ S + Q Q VV DK G+ I GT
Sbjct: 38 KKQDGEKLLRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVTITGT 83
>pdb|2VOY|B Chain B, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 42
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 147 YGFNRYAEKPARSFWMFVWEALHDLTLIILMICAAVS 183
YG N + +S W V E DL + IL++ A +S
Sbjct: 1 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACIS 37
>pdb|1XNX|A Chain A, Crystal Structure Of Constitutive Androstane Receptor
pdb|1XNX|B Chain B, Crystal Structure Of Constitutive Androstane Receptor
Length = 256
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 616 GFSSEALRTLCLAFQDIKGNHKAESIPENNYTLIAVVGIKDPVRPGVREAVE 667
GF E L ++ +++KG H E PE Y L+A + P RPGV + E
Sbjct: 141 GFQYEFLESILHFHKNLKGLHLQE--PE--YVLMAATALFSPDRPGVTQREE 188
>pdb|1XLS|E Chain E, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|F Chain F, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|G Chain G, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|H Chain H, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 242
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 616 GFSSEALRTLCLAFQDIKGNHKAESIPENNYTLIAVVGIKDPVRPGVREAVE 667
GF E L ++ +++KG H E PE Y L+A + P RPGV + E
Sbjct: 127 GFQYEFLESILHFHKNLKGLHLQE--PE--YVLMAATALFSPDRPGVTQREE 174
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 268 PADGILISGYSLTIDESSLSGETEPVHINRDRPFLLSGTKVQDGSGKMLVTSVGMR 323
PA+GI+IS + + D S GE +I R L++G +V GK V ++
Sbjct: 47 PAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVK 102
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 268 PADGILISGYSLTIDESSLSGETEPVHINRDRPFLLSGTKVQDGSGKM 315
PA+GI+IS + + D S GE +I R L++G +V GK+
Sbjct: 5 PAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGKV 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,217,917
Number of Sequences: 62578
Number of extensions: 1098225
Number of successful extensions: 2478
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2366
Number of HSP's gapped (non-prelim): 75
length of query: 1039
length of database: 14,973,337
effective HSP length: 109
effective length of query: 930
effective length of database: 8,152,335
effective search space: 7581671550
effective search space used: 7581671550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)