Your job contains 1 sequence.
>001639
MPRRRDDDDDEMDAEEDEYDEQVMDDEIDEEEEEEDDRSSRKRRRSQFIDDVAEEDDEEE
EEDYDDDEDYGGGGGAARKPKAKRRSGSEFFDLEAQVDSDEEEDEEEGEDDFIVDGGAEL
PDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVR
DPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEA
CKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVR
QRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGD
YFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANR
KKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPG
NHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYE
LRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNT
VAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANG
DRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYK
GYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSR
TPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP
GSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSA
SYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDG
SCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVD
VSLDVKILDMAILAKLAQP
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001639
(1039 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2040954 - symbol:AT2G34210 species:3702 "Arabi... 2656 2.6e-276 1
UNIPROTKB|Q5ZI08 - symbol:SUPT5H "Transcription elongatio... 1122 1.8e-116 2
MGI|MGI:1202400 - symbol:Supt5 "suppressor of Ty 5" speci... 1111 5.4e-115 2
UNIPROTKB|E9PTB2 - symbol:E9PTB2 "Uncharacterized protein... 1111 6.9e-115 2
UNIPROTKB|Q5R405 - symbol:SUPT5H "Transcription elongatio... 1078 3.4e-111 2
UNIPROTKB|O00267 - symbol:SUPT5H "Transcription elongatio... 1077 4.3e-111 2
UNIPROTKB|I3LA48 - symbol:SUPT5H "Uncharacterized protein... 1076 5.5e-111 2
UNIPROTKB|I3LMJ9 - symbol:SUPT5H "Uncharacterized protein... 1076 5.5e-111 2
UNIPROTKB|E2RLS8 - symbol:SUPT5H "Uncharacterized protein... 1077 9.0e-111 2
ZFIN|ZDB-GENE-001207-1 - symbol:supt5h "suppressor of Ty ... 1088 3.8e-110 1
UNIPROTKB|E1BC98 - symbol:SUPT5H "Uncharacterized protein... 1056 7.1e-109 2
FB|FBgn0040273 - symbol:Spt5 "Spt5" species:7227 "Drosoph... 1013 3.3e-102 1
DICTYBASE|DDB_G0287661 - symbol:spt5 "transcription initi... 697 6.9e-100 2
UNIPROTKB|F2Z3T6 - symbol:F2Z3T6 "Uncharacterized protein... 976 2.8e-98 1
TAIR|locus:2179979 - symbol:KTF1 "AT5G04290" species:3702... 576 1.3e-79 3
WB|WBGene00005015 - symbol:spt-5 species:6239 "Caenorhabd... 768 1.5e-75 1
UNIPROTKB|Q21338 - symbol:spt-5 "Transcription elongation... 768 1.5e-75 1
UNIPROTKB|H9L0H1 - symbol:SUPT5H "Transcription elongatio... 401 5.1e-69 3
CGD|CAL0004616 - symbol:SPT5 species:5476 "Candida albica... 641 7.1e-63 3
UNIPROTKB|Q5ALX3 - symbol:SPT5 "Transcription elongation ... 641 7.1e-63 3
SGD|S000004470 - symbol:SPT5 "Component of the universall... 623 4.4e-59 2
POMBASE|SPAC23C4.19 - symbol:spt5 "transcription elongati... 491 3.2e-42 2
TAIR|locus:2137420 - symbol:AT4G08360 "AT4G08360" species... 303 9.0e-26 1
TAIR|locus:4515103232 - symbol:WIH3 "AT3G49845" species:3... 99 0.00057 1
UNIPROTKB|P11414 - symbol:POLR2A "DNA-directed RNA polyme... 122 0.00060 1
UNIPROTKB|I3LQ53 - symbol:I3LQ53 "Uncharacterized protein... 122 0.00076 1
>TAIR|locus:2040954 [details] [associations]
symbol:AT2G34210 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR005825
InterPro:IPR006645 InterPro:IPR017071 PIRSF:PIRSF036945
PROSITE:PS01108 SMART:SM00738 Pfam:PF00467 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0006351
GO:GO:0005840 GO:GO:0003735 GO:GO:0032968 EMBL:AC004481
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
IPI:IPI00546552 IPI:IPI01020486 PIR:T02309 RefSeq:NP_180968.2
UniGene:At.49368 STRING:O80770 PaxDb:O80770 PRIDE:O80770
GeneID:817982 KEGG:ath:AT2G34210 TAIR:At2g34210 eggNOG:COG5164
HOGENOM:HOG000038564 InParanoid:O80770 KO:K15172 OMA:INNANAP
ArrayExpress:O80770 Genevestigator:O80770 GermOnline:AT2G34210
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 Uniprot:O80770
Length = 989
Score = 2656 (940.0 bits), Expect = 2.6e-276, P = 2.6e-276
Identities = 539/811 (66%), Positives = 622/811 (76%)
Query: 112 FIVDGGAELPDEDGGRGIHRRPLLPR--EDEQEDVEALERRIQARYA-RSSHTEYD-EET 167
FIV G A+LP+ED HRR R +EDV+ LE+R R + + + +Y+ ++
Sbjct: 98 FIVSGEADLPNEDSD---HRRQYYQRGFHPHEEDVDELEKRTLERLSTKYAKDDYELDDV 154
Query: 168 TDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYI 227
DV+QQALLPSVRDPKLW+VKCAIGRERE AVCLMQK +D+GSE +IRS IALDHL+NY+
Sbjct: 155 NDVDQQALLPSVRDPKLWLVKCAIGREREVAVCLMQKIVDRGSEFKIRSAIALDHLQNYV 214
Query: 228 YIEADKEAHVKEACKGLRNIYS-QKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNY 286
YIEAD EAHVKEA KG+RNIY+ QK++LVPI+EMT VL+VESKAIDLSRD+WVRMK+G Y
Sbjct: 215 YIEADMEAHVKEAIKGMRNIYANQKILLVPIKEMTAVLSVESKAIDLSRDSWVRMKLGIY 274
Query: 287 KGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEAREL 346
KGDLA+VVDVDNVR+RVTVKLIPRIDLQALANKLEG E KKK F PPPRFMN+DEAREL
Sbjct: 275 KGDLAQVVDVDNVRKRVTVKLIPRIDLQALANKLEGTENVKKKAFAPPPRFMNIDEAREL 334
Query: 347 HIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENG 406
HIRVE RRDPMTGDYFENIGGMLFKDGFLYK VS KSI+AQN+ PTFDELE+F+ P ENG
Sbjct: 335 HIRVEHRRDPMTGDYFENIGGMLFKDGFLYKKVSTKSIAAQNVTPTFDELERFKRPNENG 394
Query: 407 ESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTL 466
E D STLFANRKKGHFMKGDAVIVIKGDLKNLKGW+EKVDEENV IR EMK LP +
Sbjct: 395 EIDFVDESTLFANRKKGHFMKGDAVIVIKGDLKNLKGWIEKVDEENVLIRSEMKDLPNPI 454
Query: 467 AVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVES 526
AVN +ELCKYFEPGN VKVVSG G TGM++KV+QH+LIILSDTTKE I VFAD V +S
Sbjct: 455 AVNGRELCKYFEPGNFVKVVSGIHEGGTGMIVKVDQHMLIILSDTTKEHICVFADHVAKS 514
Query: 527 SEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCK 586
+EVT G+TKIGDYEL DLV+L + SFGVI++++SEA Q+LKGVPD EV++VK EIK K
Sbjct: 515 AEVTKGVTKIGDYELHDLVILSDFSFGVILKLDSEAIQILKGVPDSSEVSIVKASEIKYK 574
Query: 587 LEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAK 646
+ KK NVQDR KN VAVKDVVR++EGP KGKQGPV IY+G+LFIHDRH+LEH GFIC +
Sbjct: 575 IWKKINVQDRYKNVVAVKDVVRVIEGPSKGKQGPVVQIYKGVLFIHDRHNLEHTGFICTR 634
Query: 647 SSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSXXX------XXXXXXXXXX 700
SSCV+ GG+ +TP +P SP R+
Sbjct: 635 CSSCVLAGGN----------------FKTPALVPPSPRRFQRADMGYNPGAGGRHQGGRG 678
Query: 701 XXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD---NVV 757
D LVGT VK+RLGP+KGY GR+V+VK + VRVELE+ K+VTV+R ISD NVV
Sbjct: 679 RRGDDHLVGTYVKIRLGPFKGYSGRLVEVKDKLVRVELEA--KIVTVERKAISDMTDNVV 736
Query: 758 VSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPM 817
TP+Y MGS+TPMHPSRTPLHP MTPMR +GATPIHDGMRTPMR RAWNPY PM
Sbjct: 737 A------TPQYNMGSQTPMHPSRTPLHPCMTPMRHSGATPIHDGMRTPMRGRAWNPYMPM 790
Query: 818 SPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGW-ASTPG-GNYSDAGTPRDSS 875
SPPRDNWEDGNPGSWGTSP YEA TPGS W +STPG +Y DAGTP +++
Sbjct: 791 SPPRDNWEDGNPGSWGTSP-----------YEAATPGSDWGSSTPGRSSYRDAGTPINNA 839
Query: 876 STYVNAPSP-------YLPSTPGGQPMTPNS 899
NAPSP YLP+TPGGQ MTP +
Sbjct: 840 ----NAPSPMTPSSTSYLPTTPGGQAMTPGT 866
Score = 448 (162.8 bits), Expect = 9.2e-39, P = 9.2e-39
Identities = 119/272 (43%), Positives = 154/272 (56%)
Query: 774 TPMHP--SRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGS 831
TP + S+TP+HP TP+ TP+ TP+ D TPM W P S
Sbjct: 738 TPQYNMGSQTPMHPSRTPLHPC-MTPMRHSGATPIHD---GMRTPMRGRA--WNPYMPMS 791
Query: 832 WGTSPQYQPGSPPS---RAYEAPTPGSGW-ASTPG-GNYSDAGTPRDSSSTYVNAPSPYL 886
++ G+P S YEA TPGS W +STPG +Y DAGTP +++ NAPSP
Sbjct: 792 -PPRDNWEDGNPGSWGTSPYEAATPGSDWGSSTPGRSSYRDAGTPINNA----NAPSP-- 844
Query: 887 PSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDAMSPVIGADNEGPWFMPDILVR--RS 944
MTP+S SYL LD MS IG D E F+P ILV ++
Sbjct: 845 --------MTPSSTSYLPTTPGGQAMTPGTD-LDVMSLDIGGDAETR-FIPGILVNVHKA 894
Query: 945 GEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGAT 1004
GE+ GVIR+VLPDGSC V LG G G+TI A N++ +V P+K +++KI+GG + G+T
Sbjct: 895 GEDRNPGVIRDVLPDGSCVVALGHRGEGETIRATQNKVSLVCPKKNERVKILGGKYCGST 954
Query: 1005 GKLIGVDGTDGIVKVDVSLDVKILDMAILAKL 1036
K+IG DG DGIVK+D SLD+KIL + ILAKL
Sbjct: 955 AKVIGEDGQDGIVKLDESLDIKILKLTILAKL 986
>UNIPROTKB|Q5ZI08 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9031 "Gallus gallus" [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=ISS]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 Pfam:PF00467
GO:GO:0006351 GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250 GO:GO:0032044
KO:K15172 InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439
Pfam:PF11942 EMBL:AJ720976 IPI:IPI00594731 RefSeq:NP_001026555.1
UniGene:Gga.7037 ProteinModelPortal:Q5ZI08 SMR:Q5ZI08 STRING:Q5ZI08
GeneID:426493 KEGG:gga:426493 CTD:6829 HOVERGEN:HBG079775
NextBio:20828050 Uniprot:Q5ZI08
Length = 1079
Score = 1122 (400.0 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
Identities = 288/814 (35%), Positives = 436/814 (53%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALL 176
DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LL
Sbjct: 113 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLL 168
Query: 177 PSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSVIALDHLKNYIYIEADK 233
P V+DP LW VKC IG ER A+ LM+K I + LQI+SV+A +H+K YIY+EA K
Sbjct: 169 PGVKDPNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYK 228
Query: 234 EAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDL 290
+ HVK+A +G+ N+ Y + M VPI+EMTDVL V + +L +WVR+K G YK D+
Sbjct: 229 QTHVKQAIEGVGNLRMGYWNQQM-VPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDI 287
Query: 291 AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAKKKPFV-PPPRFMNVDEARELHI 348
A+V V+ + ++++K+IPRID + ++ ++ AK+K F PP R + ++ R L
Sbjct: 288 AQVDYVEPSQNQISLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGG 347
Query: 349 RVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES 408
V GD+ G + GFL+K+ +M ++ + ++PT ELEKF E +
Sbjct: 348 DVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDL 402
Query: 409 DIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAV 468
++ + ST ++ +F GD V V +G+L NL+G + VD + I P+ + L L
Sbjct: 403 EVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEF 460
Query: 469 NSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSE 528
++EL KYF+ G+HVKV++G G TG++++VE++ +I+ SD T +++V D+ SE
Sbjct: 461 PAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE 520
Query: 529 VTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE 588
+G+ G +E +LV LD + GVI+R+E E FQVL +V V+ + + K +
Sbjct: 521 TASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYG---KVVTVRHQAVTRKKD 577
Query: 589 KKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FICAK 646
+ V D +N + VKD+V++++GP G++G + H++RG F+H + +E+ G F+C K
Sbjct: 578 NRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVC-K 636
Query: 647 SSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRI--PQSPGRYSXXXXXXXXXXXXXXXXH 704
+ V+ GGS+ N S F + PRI P P
Sbjct: 637 TRHLVLAGGSKPRDVTNFTVGS-FAPMS--PRISSPMHPSGAGQRGGFGGGGMSRGRGRR 693
Query: 705 DA-LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD--------- 754
D L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++
Sbjct: 694 DNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGM 753
Query: 755 -NVVVSTP-Y-RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAW 811
+ TP Y TP YG GS TPM+ S+TPLH TP+HDG RTP + AW
Sbjct: 754 TSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAW 813
Query: 812 NPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAG 869
+P P +P R +++E G SPQ G+P + P P S + P N G
Sbjct: 814 DPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGTPNPQTPGYPDPSSPQVTQPY-NPQTPG 872
Query: 870 TPRDSSSTYVNAPSPY-LPSTPGGQPMTPNSASY 902
TP ++ SPY +PS G +P+ SY
Sbjct: 873 TPAMYNTDQF---SPYAVPSPQGSYQPSPSPQSY 903
Score = 214 (80.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 81/255 (31%), Positives = 123/255 (48%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 851 TPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSPYAV-PSPQGSYQP-SPSPQSYHQVAP 908
Query: 854 GS-GWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 909 SPVGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 951
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RS---GEESV--VGVIREVLPDGSCRV 964
+ +P G + + W DI V+ R ++V GVIR V G C V
Sbjct: 952 ----PGGYNPHTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVT-GGMCSV 1006
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 1023
L S + + ++ +E +E V P K++K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1007 YLKDS---EKVVSISSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDE 1063
Query: 1024 DVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 1064 QLKILNLRFLGKLLE 1078
Score = 46 (21.3 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 139 DEQEDVEALERRIQARYARSSHTEYDEETT-DVEQQ 173
+E E+ EA E R A + E +EE D E++
Sbjct: 21 EEAEEAEAEEERASAAGSEKEEVEEEEEEEYDEEEE 56
>MGI|MGI:1202400 [details] [associations]
symbol:Supt5 "suppressor of Ty 5" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISO]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=ISO]
[GO:0016239 "positive regulation of macroautophagy" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0032044 "DSIF
complex" evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032785 "negative
regulation of DNA-dependent transcription, elongation"
evidence=ISO] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=ISO] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 MGI:MGI:1202400
Pfam:PF00467 GO:GO:0045944 GO:GO:0003682 GO:GO:0000122
GO:GO:0006368 GO:GO:0016239 GO:GO:0032968 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250
GO:GO:0032044 GO:GO:0032785 KO:K15172 InterPro:IPR022581
InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 HOVERGEN:HBG079775 OrthoDB:EOG42V8FG
OMA:VGQTGII ChiTaRS:SUPT5H EMBL:U88539 EMBL:AK145117 EMBL:AK146055
EMBL:AK146453 EMBL:AK146583 EMBL:AK146650 EMBL:BC007132
EMBL:BC057449 EMBL:BC058598 EMBL:BC059849 IPI:IPI00453975
IPI:IPI00656221 PIR:T42204 RefSeq:NP_038704.1 UniGene:Mm.285906
ProteinModelPortal:O55201 SMR:O55201 STRING:O55201
PhosphoSite:O55201 PaxDb:O55201 PRIDE:O55201
Ensembl:ENSMUST00000003527 GeneID:20924 KEGG:mmu:20924
UCSC:uc009fyh.1 UCSC:uc009fyi.1 CTD:20924 InParanoid:O55201
NextBio:299833 Bgee:O55201 CleanEx:MM_SUPT5H Genevestigator:O55201
GermOnline:ENSMUSG00000003435 Uniprot:O55201
Length = 1082
Score = 1111 (396.2 bits), Expect = 5.4e-115, Sum P(2) = 5.4e-115
Identities = 285/816 (34%), Positives = 446/816 (54%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALL 176
DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LL
Sbjct: 114 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLL 169
Query: 177 PSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSVIALDHLKNYIYIEADK 233
P V+DP LW VKC IG ER A+ LM+K I + LQI+SV+A +H+K YIY+EA K
Sbjct: 170 PGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYK 229
Query: 234 EAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDL 290
+ HVK+A +G+ N+ Y + M VPI+EMTDVL V + +L +WVR+K G YK D+
Sbjct: 230 QTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDI 288
Query: 291 AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAKKKPFV-PPPRFMNVDEARELHI 348
A+V V+ + +++K+IPRID + ++ ++ AK+K F PP R + ++ R L
Sbjct: 289 AQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGG 348
Query: 349 RVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES 408
V GD+ G + GFL+K+ +M ++ + ++PT ELEKF E +
Sbjct: 349 DVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDL 403
Query: 409 DIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAV 468
++ + ST ++ +F GD V V +G+L NL+G V VD + I P+ + L L
Sbjct: 404 EVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKVLSVDGNKITIMPKHEDLKDMLEF 461
Query: 469 NSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSE 528
++EL KYF+ G+HVKV++G G TG++++VE++ +I+ SD T +++V D+ SE
Sbjct: 462 PAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE 521
Query: 529 VTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE 588
+G+ G +E +LV LD + GVI+R+E E FQVL +V V+ + + K +
Sbjct: 522 TASGVDVGGQHEWGELVQLDPRTVGVIVRLERETFQVLNM---HGKVVTVRHQAVTQKKD 578
Query: 589 KKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FICAK 646
+ V D ++N + VKD+V++++GP G++G + H+YR F+H + +E+ G F+C K
Sbjct: 579 NRFAVALDSDQNNIHVKDIVKVIDGPHSGREGEIRHLYRSFAFLHCKKLVENGGMFVC-K 637
Query: 647 SSSCVVVGGSRANGDRN--GDAYSRFNSLRTPPRIPQSPGRYSXXXXXXXXXXXXXXXXH 704
+ V+ GGS+ N ++ + + P P + G++ +
Sbjct: 638 ARHLVLAGGSKPRDVTNLTVGGFTPMSPRISSPMHPSAEGQHGGFGSPGGMSRGRGRRDN 697
Query: 705 DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMIS--DNVV---VS 759
+ L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++ D+ ++
Sbjct: 698 E-LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVDSQRPGGMT 756
Query: 760 TPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA------GA-TPIHDGMRTPMRDRA 810
+ Y TP YG S+TPM+ S RTP++ TP++D G+ TP+HDG RTP + A
Sbjct: 757 STYGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGA 814
Query: 811 WNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDA 868
W+P P +P R + +E SPQ G+P + P P S + P N
Sbjct: 815 WDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVN-PQYNPQTP 873
Query: 869 GTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 902
GTP ++ SPY +P G QP +P+ SY
Sbjct: 874 GTPAMYNTDQF---SPYAAPSPQGSYQP-SPSPQSY 905
Score = 215 (80.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 80/256 (31%), Positives = 123/256 (48%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 853 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 910
Query: 854 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 911 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 953
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 964
+ +P G + N W DI V+ R + +VG VIR V G C V
Sbjct: 954 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVT-GGMCSV 1008
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVS- 1022
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGI+++D+
Sbjct: 1009 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLED 1065
Query: 1023 LDVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 1066 QQIKILNLRFLGKLLE 1081
Score = 43 (20.2 bits), Expect = 5.4e-115, Sum P(2) = 5.4e-115
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQ 173
ED + EA E ++ ++ +E +EE + E++
Sbjct: 13 EDSERSSEAEEAEVEEDQRSAAGSEKEEEPEEEEEE 48
Score = 40 (19.1 bits), Expect = 1.1e-114, Sum P(2) = 1.1e-114
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEE 166
E++Q E+ + EYDEE
Sbjct: 27 EEDQRSAAGSEKEEEPEEEEEEEEEYDEE 55
>UNIPROTKB|E9PTB2 [details] [associations]
symbol:E9PTB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0045944 GO:GO:0003682 GO:GO:0000122
GO:GO:0006368 GO:GO:0016239 GO:GO:0032968 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 GO:GO:0032044
GO:GO:0032785 KO:K15172 InterPro:IPR022581 InterPro:IPR005100
Pfam:PF03439 Pfam:PF11942 GeneTree:ENSGT00440000037640 CTD:6829
IPI:IPI00198210 RefSeq:NP_001100967.2 RefSeq:XP_003753275.1
UniGene:Rn.100021 UniGene:Rn.220352 PRIDE:E9PTB2
Ensembl:ENSRNOT00000048905 GeneID:308472 KEGG:rno:308472
ArrayExpress:E9PTB2 Uniprot:E9PTB2
Length = 1083
Score = 1111 (396.2 bits), Expect = 6.9e-115, Sum P(2) = 6.9e-115
Identities = 285/816 (34%), Positives = 446/816 (54%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALL 176
DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LL
Sbjct: 115 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLL 170
Query: 177 PSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSVIALDHLKNYIYIEADK 233
P V+DP LW VKC IG ER A+ LM+K I + LQI+SV+A +H+K YIY+EA K
Sbjct: 171 PGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYK 230
Query: 234 EAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDL 290
+ HVK+A +G+ N+ Y + M VPI+EMTDVL V + +L +WVR+K G YK D+
Sbjct: 231 QTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDI 289
Query: 291 AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAKKKPFV-PPPRFMNVDEARELHI 348
A+V V+ + +++K+IPRID + ++ ++ AK+K F PP R + ++ R L
Sbjct: 290 AQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGG 349
Query: 349 RVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES 408
V GD+ G + GFL+K+ +M ++ + ++PT ELEKF E +
Sbjct: 350 DVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDL 404
Query: 409 DIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAV 468
++ + ST ++ +F GD V V +G+L NL+G V VD + I P+ + L L
Sbjct: 405 EVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKVLSVDGNKITIMPKHEDLKDMLEF 462
Query: 469 NSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSE 528
++EL KYF+ G+HVKV++G G TG++++VE++ +I+ SD T +++V D+ SE
Sbjct: 463 PAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE 522
Query: 529 VTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE 588
+G+ G +E +LV LD + GVI+R+E E FQVL +V V+ + + K +
Sbjct: 523 TASGVDVGGQHEWGELVQLDPRTVGVIVRLERETFQVLNM---HGKVVTVRHQAVTQKKD 579
Query: 589 KKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FICAK 646
+ V D ++N + VKD+V++++GP G++G + H+YR F+H + +E+ G F+C K
Sbjct: 580 NRFAVALDSDQNNIHVKDIVKVIDGPHSGREGEIRHLYRSFAFLHCKKLVENGGMFVC-K 638
Query: 647 SSSCVVVGGSRANGDRN--GDAYSRFNSLRTPPRIPQSPGRYSXXXXXXXXXXXXXXXXH 704
+ V+ GGS+ N ++ + + P P + G++ +
Sbjct: 639 ARHLVLAGGSKPRDVTNLTVGGFTPMSPRISSPMHPSAEGQHGGFGSPGGMSRGRGRRDN 698
Query: 705 DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMIS--DNVV---VS 759
+ L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++ D+ ++
Sbjct: 699 E-LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVDSQRPGGMT 757
Query: 760 TPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA------GA-TPIHDGMRTPMRDRA 810
+ Y TP YG S+TPM+ S RTP++ TP++D G+ TP+HDG RTP + A
Sbjct: 758 STYGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGA 815
Query: 811 WNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDA 868
W+P P +P R + +E SPQ G+P + P P S + P N
Sbjct: 816 WDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVN-PQYNPQTP 874
Query: 869 GTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 902
GTP ++ SPY +P G QP +P+ SY
Sbjct: 875 GTPAMYNTDQF---SPYAAPSPQGSYQP-SPSPQSY 906
Score = 215 (80.7 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 80/256 (31%), Positives = 123/256 (48%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 854 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 911
Query: 854 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 912 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 954
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 964
+ +P G + N W DI V+ R + +VG VIR V G C V
Sbjct: 955 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVT-GGMCSV 1009
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVS- 1022
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGI+++D+
Sbjct: 1010 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLED 1066
Query: 1023 LDVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 1067 QQIKILNLRFLGKLLE 1082
Score = 42 (19.8 bits), Expect = 6.9e-115, Sum P(2) = 6.9e-115
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQ 173
ED + EA E ++ ++ +E +EE + E++
Sbjct: 13 EDSERSSEAEEAEVEEDRRSAAGSEKEEEPEEEEEE 48
Score = 39 (18.8 bits), Expect = 1.4e-114, Sum P(2) = 1.4e-114
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 137 REDEQEDVEALE-RRIQARYARSSHTEYDEETTDVE 171
R E E+ E E RR A + E +EE + E
Sbjct: 17 RSSEAEEAEVEEDRRSAAGSEKEEEPEEEEEEEEEE 52
>UNIPROTKB|Q5R405 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9601 "Pongo abelii" [GO:0032044 "DSIF complex"
evidence=ISS] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0006351 GO:GO:0032968 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 GO:GO:0032044
KO:K15172 InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439
Pfam:PF11942 CTD:6829 HOVERGEN:HBG079775 EMBL:CR861455
RefSeq:NP_001127053.1 UniGene:Pab.890 ProteinModelPortal:Q5R405
SMR:Q5R405 PRIDE:Q5R405 GeneID:100174081 KEGG:pon:100174081
InParanoid:Q5R405 Uniprot:Q5R405
Length = 1083
Score = 1078 (384.5 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 285/823 (34%), Positives = 443/823 (53%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALL 176
DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LL
Sbjct: 112 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLL 167
Query: 177 PSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSVIALDHLKNYIYIEADK 233
P V+DP LW VKC IG ER A+ LM+K I + LQI+SV+A +H+K YIY+EA K
Sbjct: 168 PGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYK 227
Query: 234 EAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDL 290
+ HVK+A +G+ N+ Y + M VPI+EMTDVL V + +L +WVR+K G YK D+
Sbjct: 228 QTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDI 286
Query: 291 AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAKKKPFV-PPPRFMNVDEARELHI 348
A+V V+ + +++K+IPRID + ++ ++ AK+K F PP R + ++ R L
Sbjct: 287 AQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGG 346
Query: 349 RVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES 408
V GD+ G + GFL+K+ +M ++ + ++PT ELEKF E +
Sbjct: 347 DVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDL 401
Query: 409 DIASLSTLFANRKKGH-FMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLA 467
++ + ST R++ H F GD V V +G+L NL+G + VD + I P+ + L L
Sbjct: 402 EVVTEST---GREREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLE 458
Query: 468 VNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESS 527
++EL KYF+ G+HVKV++G G TG++++VE++ +I+ SD T +++V D+ S
Sbjct: 459 FPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCS 518
Query: 528 EVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKL 587
E +G+ G +E +LV LD + GVI+R+E E FQVL +V V+ + + K
Sbjct: 519 ETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYG---KVVTVRHQAVTRKK 575
Query: 588 EKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FICA 645
+ + V D +N + VKD+V++++GP G++G + H++R F+H + +E+ G F+C
Sbjct: 576 DNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVC- 634
Query: 646 KSSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQSPGR---YSXXXXXXXXXXXXX 700
K+ V+ GGS+ N ++ + + P P + G+ +
Sbjct: 635 KTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGR 694
Query: 701 XXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD------ 754
+ L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++
Sbjct: 695 GRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRP 754
Query: 755 NVVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA------GA-TPIHDGMRTP 805
+ ST Y TP YG S+TPM+ S RTP++ TP++D G+ TP+HDG RTP
Sbjct: 755 GGMTST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTP 811
Query: 806 MRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---GSPPSRAYEAPTPGSGWASTPG 862
+ AW+P P +P R E+ ++ P P G P+ TPG S+P
Sbjct: 812 AQSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYGGTPN----PQTPGYPDPSSPQ 865
Query: 863 GNYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 902
N + TP + + SPY +P G QP +P+ SY
Sbjct: 866 VNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPSPQSY 907
Score = 220 (82.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 82/255 (32%), Positives = 122/255 (47%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 855 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 912
Query: 854 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 913 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 955
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 964
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 956 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1010
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 1023
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D
Sbjct: 1011 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDPDE 1067
Query: 1024 DVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 1068 QLKILNLRFLGKLLE 1082
Score = 40 (19.1 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQ 172
+ E+ +VE ERR A + E +EE + E+
Sbjct: 20 DGEEAEVEE-ERRSAAGSEKEEEPEEEEEEEEEEE 53
Score = 37 (18.1 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQ 173
ED + + E ++ ++ +E +EE + E++
Sbjct: 13 EDSERSSDGEEAEVEEERRSAAGSEKEEEPEEEEEE 48
>UNIPROTKB|O00267 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9606 "Homo sapiens" [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0010033 "response to organic substance"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IDA;TAS] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0007049 "cell
cycle" evidence=NAS] [GO:0045090 "retroviral genome replication"
evidence=NAS] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0032044 "DSIF complex" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016239 "positive regulation of macroautophagy"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 Reactome:REACT_116125 Reactome:REACT_1675
GO:GO:0045944 GO:GO:0010033 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0007049 GO:GO:0006368 GO:GO:0016239
Reactome:REACT_1788 GO:GO:0032968 GO:GO:0006370 GO:GO:0050434
Reactome:REACT_1892 GO:GO:0032786 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250
GO:GO:0045090 GO:GO:0032044 GO:GO:0032785 PDB:3H7H PDBsum:3H7H
HOGENOM:HOG000038564 KO:K15172 InterPro:IPR022581
InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942 CTD:6829
HOVERGEN:HBG079775 OMA:VGQTGII EMBL:U56402 EMBL:Y12790
EMBL:AB000516 EMBL:AF040253 EMBL:AB209257 EMBL:BC024203
IPI:IPI00298058 IPI:IPI00655641 RefSeq:NP_001104490.1
RefSeq:NP_001124296.1 RefSeq:NP_001124297.1 RefSeq:NP_003160.2
UniGene:Hs.631604 PDB:2DO3 PDB:2E6Z PDB:2E70 PDBsum:2DO3
PDBsum:2E6Z PDBsum:2E70 ProteinModelPortal:O00267 SMR:O00267
DIP:DIP-29014N IntAct:O00267 MINT:MINT-1193818 STRING:O00267
PhosphoSite:O00267 PaxDb:O00267 PRIDE:O00267 DNASU:6829
Ensembl:ENST00000359191 Ensembl:ENST00000402194
Ensembl:ENST00000432763 GeneID:6829 KEGG:hsa:6829 UCSC:uc002oln.4
UCSC:uc002olq.4 GeneCards:GC19P039936 HGNC:HGNC:11469 HPA:CAB034370
HPA:HPA029273 MIM:602102 neXtProt:NX_O00267 PharmGKB:PA36255
InParanoid:O00267 PhylomeDB:O00267 ChiTaRS:SUPT5H
EvolutionaryTrace:O00267 GenomeRNAi:6829 NextBio:26663
ArrayExpress:O00267 Bgee:O00267 CleanEx:HS_SUPT5H
Genevestigator:O00267 GermOnline:ENSG00000196235 Uniprot:O00267
Length = 1087
Score = 1077 (384.2 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
Identities = 283/822 (34%), Positives = 442/822 (53%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALL 176
DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LL
Sbjct: 116 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLL 171
Query: 177 PSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSVIALDHLKNYIYIEADK 233
P V+DP LW VKC IG ER A+ LM+K I + LQI+SV+A +H+K YIY+EA K
Sbjct: 172 PGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYK 231
Query: 234 EAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDL 290
+ HVK+A +G+ N+ Y + M VPI+EMTDVL V + +L +WVR+K G YK D+
Sbjct: 232 QTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDI 290
Query: 291 AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAKKKPFV-PPPRFMNVDEARELHI 348
A+V V+ + +++K+IPRID + ++ ++ AK+K F PP R + ++ R L
Sbjct: 291 AQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGG 350
Query: 349 RVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES 408
V GD+ G + GFL+K+ +M ++ + ++PT ELEKF E +
Sbjct: 351 DVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDL 405
Query: 409 DIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAV 468
++ + ST ++ +F GD V V +G+L NL+G + VD + I P+ + L L
Sbjct: 406 EVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEF 463
Query: 469 NSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSE 528
++EL KYF+ G+HVKV++G G TG++++VE++ +I+ SD T +++V D+ SE
Sbjct: 464 PAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE 523
Query: 529 VTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE 588
+G+ G +E +LV LD + GVI+R+E E FQVL +V V+ + + K +
Sbjct: 524 TASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYG---KVVTVRHQAVTRKKD 580
Query: 589 KKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FICAK 646
+ V D +N + VKD+V++++GP G++G + H++R F+H + +E+ G F+C K
Sbjct: 581 NRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVC-K 639
Query: 647 SSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQSPGR---YSXXXXXXXXXXXXXX 701
+ V+ GGS+ N ++ + + P P + G+ +
Sbjct: 640 TRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRG 699
Query: 702 XXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD------N 755
+ L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++
Sbjct: 700 RRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPG 759
Query: 756 VVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA------GA-TPIHDGMRTPM 806
+ ST Y TP YG S+TPM+ S RTP++ TP++D G+ TP+HDG RTP
Sbjct: 760 GMTST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPA 816
Query: 807 RDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---GSPPSRAYEAPTPGSGWASTPGG 863
+ AW+P P +P R E+ ++ P P G P+ TPG S+P
Sbjct: 817 QSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYGGTPN----PQTPGYPDPSSPQV 870
Query: 864 NYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 902
N + TP + + SPY +P G QP +P+ SY
Sbjct: 871 NPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPSPQSY 911
Score = 223 (83.6 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 82/255 (32%), Positives = 123/255 (48%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 859 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 916
Query: 854 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 917 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 959
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 964
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 960 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1014
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 1023
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1015 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1071
Query: 1024 DVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 1072 QLKILNLRFLGKLLE 1086
Score = 40 (19.1 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 137 REDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQ 173
R + E+ E E R A + DEE + E++
Sbjct: 17 RSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEE 53
Score = 39 (18.8 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQ 173
ED + + E + ++ +E +EE D E++
Sbjct: 13 EDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEE 48
>UNIPROTKB|I3LA48 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 Pfam:PF00467
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439
Pfam:PF11942 GeneTree:ENSGT00440000037640 EMBL:FP102918
Ensembl:ENSSSCT00000031855 Uniprot:I3LA48
Length = 1083
Score = 1076 (383.8 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 283/822 (34%), Positives = 442/822 (53%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALL 176
DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LL
Sbjct: 112 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLL 167
Query: 177 PSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSVIALDHLKNYIYIEADK 233
P V+DP LW VKC IG ER A+ LM+K I + LQI+SV+A +H+K YIY+EA K
Sbjct: 168 PGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYK 227
Query: 234 EAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDL 290
+ HVK+A +G+ N+ Y + M VPI+EMTDVL V + +L +WVR+K G YK D+
Sbjct: 228 QTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDI 286
Query: 291 AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAKKKPFV-PPPRFMNVDEARELHI 348
A+V V+ + +++K+IPRID + ++ ++ AK+K F PP R + ++ R L
Sbjct: 287 AQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGG 346
Query: 349 RVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES 408
V GD+ G + GFL+K+ +M ++ + ++PT ELEKF E +
Sbjct: 347 DVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDL 401
Query: 409 DIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAV 468
++ + ST ++ +F GD V V +G+L NL+G + VD + I P+ + L L
Sbjct: 402 EVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEF 459
Query: 469 NSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSE 528
++EL KYF+ G+HVKV++G G TG++++VE++ +I+ SD T +++V D+ SE
Sbjct: 460 PAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE 519
Query: 529 VTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE 588
+G+ G +E +LV LD + GVI+R+E E FQVL +V V+ + + K +
Sbjct: 520 TASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYG---KVVTVRHQAVTRKKD 576
Query: 589 KKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FICAK 646
+ V D +N + VKD+V++++GP G++G + H++R F+H + +E+ G F+C K
Sbjct: 577 NRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVC-K 635
Query: 647 SSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQSPGR---YSXXXXXXXXXXXXXX 701
+ V+ GGS+ N ++ + + P P + G+ +
Sbjct: 636 TRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGGGGMSRGRG 695
Query: 702 XXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD------N 755
+ L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++
Sbjct: 696 RRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPG 755
Query: 756 VVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA------GA-TPIHDGMRTPM 806
+ ST Y TP YG S+TPM+ S RTP++ TP++D G+ TP+HDG RTP
Sbjct: 756 GMTST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPA 812
Query: 807 RDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---GSPPSRAYEAPTPGSGWASTPGG 863
+ AW+P P +P R E+ ++ P P G P+ TPG S+P
Sbjct: 813 QSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYGGTPN----PQTPGYPDPSSPQV 866
Query: 864 NYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 902
N + TP + + SPY +P G QP +P+ SY
Sbjct: 867 NPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPSPQSY 907
Score = 223 (83.6 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 82/255 (32%), Positives = 123/255 (48%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 855 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 912
Query: 854 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 913 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 955
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 964
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 956 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1010
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 1023
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1011 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1067
Query: 1024 DVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 1068 QLKILNLRFLGKLLE 1082
Score = 40 (19.1 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQ 172
+ E+ +VE ERR A + E +EE + E+
Sbjct: 20 DGEEAEVEE-ERRSAAGSEKEEEPEEEEEEEEEEE 53
Score = 37 (18.1 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQ 173
ED + + E ++ ++ +E +EE + E++
Sbjct: 13 EDSERSSDGEEAEVEEERRSAAGSEKEEEPEEEEEE 48
>UNIPROTKB|I3LMJ9 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR006645
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM00738 SMART:SM01104 Pfam:PF00467 GO:GO:0045944
GO:GO:0003682 GO:GO:0000122 GO:GO:0006368 GO:GO:0016239
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 GO:GO:0032785 InterPro:IPR022581
InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 OMA:VGQTGII EMBL:FP102918
Ensembl:ENSSSCT00000030229 Uniprot:I3LMJ9
Length = 1088
Score = 1076 (383.8 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 283/822 (34%), Positives = 442/822 (53%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALL 176
DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LL
Sbjct: 117 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLL 172
Query: 177 PSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSVIALDHLKNYIYIEADK 233
P V+DP LW VKC IG ER A+ LM+K I + LQI+SV+A +H+K YIY+EA K
Sbjct: 173 PGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYK 232
Query: 234 EAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDL 290
+ HVK+A +G+ N+ Y + M VPI+EMTDVL V + +L +WVR+K G YK D+
Sbjct: 233 QTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDI 291
Query: 291 AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAKKKPFV-PPPRFMNVDEARELHI 348
A+V V+ + +++K+IPRID + ++ ++ AK+K F PP R + ++ R L
Sbjct: 292 AQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGG 351
Query: 349 RVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES 408
V GD+ G + GFL+K+ +M ++ + ++PT ELEKF E +
Sbjct: 352 DVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDL 406
Query: 409 DIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAV 468
++ + ST ++ +F GD V V +G+L NL+G + VD + I P+ + L L
Sbjct: 407 EVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEF 464
Query: 469 NSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSE 528
++EL KYF+ G+HVKV++G G TG++++VE++ +I+ SD T +++V D+ SE
Sbjct: 465 PAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE 524
Query: 529 VTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE 588
+G+ G +E +LV LD + GVI+R+E E FQVL +V V+ + + K +
Sbjct: 525 TASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYG---KVVTVRHQAVTRKKD 581
Query: 589 KKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FICAK 646
+ V D +N + VKD+V++++GP G++G + H++R F+H + +E+ G F+C K
Sbjct: 582 NRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVC-K 640
Query: 647 SSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQSPGR---YSXXXXXXXXXXXXXX 701
+ V+ GGS+ N ++ + + P P + G+ +
Sbjct: 641 TRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGGGGMSRGRG 700
Query: 702 XXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD------N 755
+ L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++
Sbjct: 701 RRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPG 760
Query: 756 VVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA------GA-TPIHDGMRTPM 806
+ ST Y TP YG S+TPM+ S RTP++ TP++D G+ TP+HDG RTP
Sbjct: 761 GMTST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPA 817
Query: 807 RDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---GSPPSRAYEAPTPGSGWASTPGG 863
+ AW+P P +P R E+ ++ P P G P+ TPG S+P
Sbjct: 818 QSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYGGTPN----PQTPGYPDPSSPQV 871
Query: 864 NYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 902
N + TP + + SPY +P G QP +P+ SY
Sbjct: 872 NPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPSPQSY 912
Score = 223 (83.6 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 82/255 (32%), Positives = 123/255 (48%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 860 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 917
Query: 854 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 918 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 960
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 964
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 961 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1015
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 1023
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1016 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1072
Query: 1024 DVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 1073 QLKILNLRFLGKLLE 1087
Score = 40 (19.1 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQ 172
+ E+ +VE ERR A + E +EE + E+
Sbjct: 20 DGEEAEVEE-ERRSAAGSEKEEEPEEEEEEEEEEE 53
Score = 37 (18.1 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQ 173
ED + + E ++ ++ +E +EE + E++
Sbjct: 13 EDSERSSDGEEAEVEEERRSAAGSEKEEEPEEEEEE 48
>UNIPROTKB|E2RLS8 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR006645
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM00738 SMART:SM01104 Pfam:PF00467 GO:GO:0045944
GO:GO:0003682 GO:GO:0000122 GO:GO:0006368 GO:GO:0016239
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 GO:GO:0032785 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 CTD:6829 OMA:VGQTGII EMBL:AAEX03000956
RefSeq:XP_533673.2 Ensembl:ENSCAFT00000008856 GeneID:476462
KEGG:cfa:476462 Uniprot:E2RLS8
Length = 1087
Score = 1077 (384.2 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 283/822 (34%), Positives = 442/822 (53%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALL 176
DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LL
Sbjct: 116 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLL 171
Query: 177 PSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSVIALDHLKNYIYIEADK 233
P V+DP LW VKC IG ER A+ LM+K I + LQI+SV+A +H+K YIY+EA K
Sbjct: 172 PGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYK 231
Query: 234 EAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDL 290
+ HVK+A +G+ N+ Y + M VPI+EMTDVL V + +L +WVR+K G YK D+
Sbjct: 232 QTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDI 290
Query: 291 AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAKKKPFV-PPPRFMNVDEARELHI 348
A+V V+ + +++K+IPRID + ++ ++ AK+K F PP R + ++ R L
Sbjct: 291 AQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGG 350
Query: 349 RVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES 408
V GD+ G + GFL+K+ +M ++ + ++PT ELEKF E +
Sbjct: 351 DVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDL 405
Query: 409 DIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAV 468
++ + ST ++ +F GD V V +G+L NL+G + VD + I P+ + L L
Sbjct: 406 EVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEF 463
Query: 469 NSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSE 528
++EL KYF+ G+HVKV++G G TG++++VE++ +I+ SD T +++V D+ SE
Sbjct: 464 PAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE 523
Query: 529 VTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE 588
+G+ G +E +LV LD + GVI+R+E E FQVL +V V+ + + K +
Sbjct: 524 TASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYG---KVVTVRHQAVTRKKD 580
Query: 589 KKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FICAK 646
+ V D +N + VKD+V++++GP G++G + H++R F+H + +E+ G F+C K
Sbjct: 581 NRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVC-K 639
Query: 647 SSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQSPGR---YSXXXXXXXXXXXXXX 701
+ V+ GGS+ N ++ + + P P + G+ +
Sbjct: 640 TRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRG 699
Query: 702 XXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD------N 755
+ L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++
Sbjct: 700 RRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPG 759
Query: 756 VVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA------GA-TPIHDGMRTPM 806
+ ST Y TP YG S+TPM+ S RTP++ TP++D G+ TP+HDG RTP
Sbjct: 760 GMTST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPA 816
Query: 807 RDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---GSPPSRAYEAPTPGSGWASTPGG 863
+ AW+P P +P R E+ ++ P P G P+ TPG S+P
Sbjct: 817 QSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYGGTPN----PQTPGYPDPSSPQV 870
Query: 864 NYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 902
N + TP + + SPY +P G QP +P+ SY
Sbjct: 871 NPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPSPQSY 911
Score = 223 (83.6 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 82/255 (32%), Positives = 123/255 (48%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 859 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 916
Query: 854 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 917 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 959
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 964
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 960 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1014
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 1023
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1015 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1071
Query: 1024 DVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 1072 QLKILNLRFLGKLLE 1086
Score = 37 (18.1 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 131 RRPLLPREDEQEDVEALERRIQARYARSSHTEYDE 165
RR + E E+E E E + Y E D+
Sbjct: 30 RRSVAGSEKEEEPEEEEEEEEEEEYDEEEEEEDDD 64
>ZFIN|ZDB-GENE-001207-1 [details] [associations]
symbol:supt5h "suppressor of Ty 5 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA;IMP]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0032044 "DSIF
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IMP] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 Pfam:PF00467
ZFIN:ZDB-GENE-001207-1 GO:GO:0001764 GO:GO:0030097 GO:GO:0006368
GO:GO:0034244 GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250 GO:GO:0032044
HOGENOM:HOG000038564 InterPro:IPR022581 InterPro:IPR005100
Pfam:PF03439 Pfam:PF11942 HOVERGEN:HBG079775 EMBL:AF288409
EMBL:BC057529 IPI:IPI00485845 IPI:IPI00510595 UniGene:Dr.33072
ProteinModelPortal:Q9DDT5 SMR:Q9DDT5 STRING:Q9DDT5 PRIDE:Q9DDT5
InParanoid:Q9DDT5 OrthoDB:EOG42V8FG ArrayExpress:Q9DDT5
Uniprot:Q9DDT5
Length = 1084
Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
Identities = 289/824 (35%), Positives = 438/824 (53%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEY-----DEETTDVEQQALL 176
DED G R L R D +E EAL +YA+SS E+ ++ + D+ QQ LL
Sbjct: 115 DEDHS-GSRRLQNLWR-DSRE--EALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLL 170
Query: 177 PSVRDPKLWMVKCAIGREREAAVCLMQK-----CIDKGSELQIRSVIALDHLKNYIYIEA 231
P V+DP LW VKC IG ER A+ LM+K C D + LQI+SV+A +H+K YIY+EA
Sbjct: 171 PGVKDPNLWTVKCKIGEERATAISLMRKFVAYQCTD--TPLQIKSVVAPEHVKGYIYVEA 228
Query: 232 DKEAHVKEACKGLRNI----YSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYK 287
K+ HVK A +G+ N+ ++Q+ +VPI+EMTDVL V + +L +WVR+K G YK
Sbjct: 229 YKQTHVKAAIEGVGNLRMGFWNQQ--MVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYK 286
Query: 288 GDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAKKKPFV-PPPRFMNVDEARE 345
D+A+V V+ + +++K+IPRIDL + ++ ++ AK+K F PP R + ++ R
Sbjct: 287 DDIAQVDYVEPSQNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPPQRLFDAEKIRS 346
Query: 346 LHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGEN 405
L V D M FE + GFL+K+ +M ++ + ++PT ELEKF E
Sbjct: 347 LGGEVSHDGDFMI---FE--ANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEG 401
Query: 406 GESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKT 465
+ ++ + +T ++ + GD V V +G+L NL+G + VD + I P+ + L
Sbjct: 402 IDLEVVTETT--GKEREHNLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDP 459
Query: 466 LAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVE 525
L + EL KYF G+HVKV++G G TG++++VE++ +I+ SD T +++V D+
Sbjct: 460 LEFPAHELRKYFRMGDHVKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQL 519
Query: 526 SSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKC 585
SE +G+ G +E +LV LD + GVI+R+E E FQVL +V V+ + +
Sbjct: 520 CSETASGVDAGGQHEWGELVQLDPQTVGVIVRLERETFQVLNM---HGKVLTVRHQAVNR 576
Query: 586 KLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FI 643
+ + + V D +N + VKD+V++++GP G++G + HI+RG F+H + +E+ G F+
Sbjct: 577 RKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFV 636
Query: 644 CAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRI--PQSPG------RYSXXXXXXXX 695
C K+ V+ GGS+ D F + PRI P PG R
Sbjct: 637 C-KARHLVLAGGSKPR-DVTNFTVGGFAPMS--PRISSPMHPGGGGQPQRGGGGGGGGGM 692
Query: 696 XXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMIS-- 753
+D L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++
Sbjct: 693 GRGRGRRDND-LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTV 751
Query: 754 --------DNVVVSTP-Y-RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMR 803
+ + TP Y TP YG GS TPM+ S+TPLH TP+HDG R
Sbjct: 752 GGKERQGRSSTHLRTPMYGSQTPIYGTGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSR 811
Query: 804 TPMRDRAWNPYTPMSP--PRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTP 861
TP + AW+P P +P P D +E SPQ G+P + TPG +P
Sbjct: 812 TPGQSGAWDPNNPNTPSRPDDEYEFAYDDEPSPSPQGYGGTPNPQ-----TPGYPEVPSP 866
Query: 862 GGNYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 902
N + TP + + SPY +P G QP +P+ SY
Sbjct: 867 QVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQP-SPSPQSY 909
Score = 216 (81.1 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 79/252 (31%), Positives = 120/252 (47%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 857 TPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYA-APSPQGSYQP-SPSPQSYHQVAP 914
Query: 854 GS-GWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 915 SPVGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS-----PGGYN 962
Query: 912 XXXXXXXLDAMSPVIGADNEGPWFMPDILVR------RSGEESVVGVIREVLPDGSCRVV 965
+D A N+ W DI+VR G + G+IR V G C V
Sbjct: 963 PHTPGSNIDQ------ASND--WVTTDIMVRVKDTFLDGGVINQTGIIRSVT-GGMCSVF 1013
Query: 966 LGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLD 1024
L + + + ++ +E +E V P K +K+K++ G R ATG L+ +DG DGIV++++
Sbjct: 1014 LQDT---EKVVSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQ 1070
Query: 1025 VKILDMAILAKL 1036
+KIL++ L KL
Sbjct: 1071 LKILNLRFLGKL 1082
>UNIPROTKB|E1BC98 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR006645
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM00738 SMART:SM01104 Pfam:PF00467 GO:GO:0045944
GO:GO:0003682 GO:GO:0000122 GO:GO:0006368 GO:GO:0016239
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 GO:GO:0032785 InterPro:IPR005100
Pfam:PF03439 GeneTree:ENSGT00440000037640 OMA:VGQTGII
EMBL:DAAA02047062 EMBL:DAAA02047059 EMBL:DAAA02047060
EMBL:DAAA02047061 IPI:IPI00842593 Ensembl:ENSBTAT00000044229
ArrayExpress:E1BC98 Uniprot:E1BC98
Length = 1083
Score = 1056 (376.8 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 268/775 (34%), Positives = 422/775 (54%)
Query: 164 DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSVIAL 220
DE + D+ QQ LLP V+DP LW VKC IG ER A+ LM+K I + LQI+SV+A
Sbjct: 155 DELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAP 214
Query: 221 DHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVESKAIDLSRDT 277
+H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V + +L +
Sbjct: 215 EHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVKEVANLKPKS 273
Query: 278 WVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAKKKPFV-PPP 335
WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK+K F PP
Sbjct: 274 WVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQ 333
Query: 336 RFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDE 395
R + ++ R L V GD+ G + GFL+K+ +M ++ + ++PT E
Sbjct: 334 RLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSE 388
Query: 396 LEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHI 455
LEKF E + ++ + ST ++ +F GD V V +G+L NL+G + VD + I
Sbjct: 389 LEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITI 446
Query: 456 RPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKED 515
P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I+ SD T +
Sbjct: 447 MPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHE 506
Query: 516 IRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEV 575
++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL +V
Sbjct: 507 LKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYG---KV 563
Query: 576 ALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDR 634
V+ + + K + + V D +N + VKD+V++++GP G++G + H++R F+H +
Sbjct: 564 VTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCK 623
Query: 635 HHLEHAG-FICAKSSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQSPGR---YSX 688
+E+ G F+C K+ V+ GGS+ N ++ + + P P + G+ +
Sbjct: 624 KLVENGGMFVC-KTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGS 682
Query: 689 XXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVD 748
+ L+G TV++ GPYKGY G V D + RVEL S + ++VD
Sbjct: 683 PGGGGGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVD 742
Query: 749 RSMISD------NVVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA------G 794
R ++ + ST Y TP YG S+TPM+ S RTP++ TP++D G
Sbjct: 743 RQRLTTVGSRRPGGMAST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSRTPHYG 799
Query: 795 A-TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---GSPPSRAYEA 850
+ TP+HDG RTP + AW+P P +P R E+ ++ P P G P+
Sbjct: 800 SQTPLHDGSRTPAQSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYGGTPN----P 853
Query: 851 PTPGSGWASTPGGNYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 902
TPG S+P N + TP + + SPY +P G QP +P+ SY
Sbjct: 854 QTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPSPQSY 907
Score = 223 (83.6 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 82/255 (32%), Positives = 123/255 (48%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 855 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 912
Query: 854 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 913 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 955
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 964
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 956 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1010
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 1023
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1011 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1067
Query: 1024 DVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 1068 QLKILNLRFLGKLLE 1082
Score = 40 (19.1 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQ 172
+ E+ +VE ERR A + E +EE + E+
Sbjct: 20 DGEEAEVEE-ERRSAAGSEKEEEPEEEEEEEEEEE 53
Score = 37 (18.1 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 138 EDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQ 173
ED + + E ++ ++ +E +EE + E++
Sbjct: 13 EDSERSSDGEEAEVEEERRSAAGSEKEEEPEEEEEE 48
>FB|FBgn0040273 [details] [associations]
symbol:Spt5 "Spt5" species:7227 "Drosophila melanogaster"
[GO:0006351 "transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0005705 "polytene chromosome
interband" evidence=IDA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA] [GO:0008023 "transcription elongation
factor complex" evidence=IPI] [GO:0035101 "FACT complex"
evidence=IPI] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 EMBL:AE013599 GO:GO:0007095 GO:GO:0007052
GO:GO:0045944 GO:GO:0000122 GO:GO:0046982 GO:GO:0006368
GO:GO:0032968 GO:GO:0005703 GO:GO:0005705 GO:GO:0032786
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
GO:GO:0032044 GO:GO:0032785 eggNOG:COG5164 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 GeneTree:ENSGT00440000037640
EMBL:AF222864 EMBL:AY069140 EMBL:BT001668 EMBL:BT023840
RefSeq:NP_652610.1 UniGene:Dm.2263 ProteinModelPortal:Q9V460
SMR:Q9V460 DIP:DIP-59538N IntAct:Q9V460 MINT:MINT-322311
STRING:Q9V460 PaxDb:Q9V460 PRIDE:Q9V460 EnsemblMetazoa:FBtr0086531
GeneID:53442 KEGG:dme:Dmel_CG7626 UCSC:CG7626-RA CTD:53442
FlyBase:FBgn0040273 InParanoid:Q9V460 OMA:VGQTGII OrthoDB:EOG4X0K78
PhylomeDB:Q9V460 GenomeRNAi:53442 NextBio:841174 Bgee:Q9V460
GermOnline:CG7626 Uniprot:Q9V460
Length = 1078
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 320/1010 (31%), Positives = 492/1010 (48%)
Query: 78 RKPKAKRRSGSEFFDLEAQVXXXXXXXXXXXXXXFIVD-GGAELPDEDG--GRGIH-RRP 133
RK K K R G D EA+V + G E+ DE G R I RR
Sbjct: 103 RKKKKKERFGGFIID-EAEVDDEVDEDDEWEEGANEIGIVGNEI-DELGPTARDIEIRRR 160
Query: 134 LLPREDEQEDVEALERRIQARYARSS----HT-EYDEETTD-VEQQALLPSVRDPKLWMV 187
D Q++ E +E ++ +YA S H + EE +D + QQ LLP ++DP LWMV
Sbjct: 161 GTNLWDTQKEDE-IEEYLRKKYADESIAKRHFGDGGEEMSDEITQQTLLPGIKDPNLWMV 219
Query: 188 KCAIGREREAAVCLMQKCI---DKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGL 244
KC IG E+ A+ LM+K + + LQI+S+IA + +K YIY+EA K+ HVK +
Sbjct: 220 KCRIGEEKATALLLMRKYLTYLNTDDPLQIKSIIAPEGVKGYIYLEAYKQTHVKTCIDNV 279
Query: 245 RNIY--SQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQR 302
N+ K +VPI+EMTDVL V + + L WVR+K G YK D+A+V VD + +
Sbjct: 280 GNLRMGKWKQEMVPIKEMTDVLKVVKEQVGLKVKQWVRLKRGLYKDDIAQVDYVDLAQNQ 339
Query: 303 VTVKLIPRIDLQALANKL-----EGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPM 357
V +KL+PRID + L E + +KK P + + + R I E D
Sbjct: 340 VHLKLLPRIDYTRMRGALRTTATESDDSKRKKKRRPAAKPFDPEAVRA--IGGEVHSD-- 395
Query: 358 TGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLF 417
GD+ G + GFLYK +M +I + ++PT ELE+F E E ++ + T+
Sbjct: 396 -GDFLLFEGNRYSRKGFLYKNFTMSAILSDGVKPTLAELERFEESPE--EVNLEIMGTVK 452
Query: 418 ANRKKGH-FMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKY 476
+ H F GD V V GDL+NL+ + +D + + P+ + L L + EL KY
Sbjct: 453 DDPTMAHSFSMGDNVEVCVGDLENLQAKIVAIDGTMITVMPKHQDLKDPLIFKASELRKY 512
Query: 477 FEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKI 536
F+ G+H +V++G G TG++++VE ++++SD T ++ V D+ S+V TG+ +
Sbjct: 513 FKTGDHARVLAGRYEGETGLIIRVEPTRVVLVSDLTNHELEVLPRDLQLCSDVATGVDCL 572
Query: 537 GDYELRDLVLLDNNSFGVIIRVESEAFQVL----KGVPDRPEVALVKLREIKCKLEKKSN 592
G ++ D+V LD+ + GVI+R+E E F VL K + +P AL K +E + +
Sbjct: 573 GQFQWGDMVQLDSQNVGVIVRLERENFHVLGMNGKCIECKP-TALHKRKE-----NRHTV 626
Query: 593 VQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FICAKSSSCV 651
D ++N + +DVV+++EGP G+ G ++H+YR + F+H R + E+ G F+C K+
Sbjct: 627 ALDADQNQIRRRDVVKVMEGPHAGRSGEIKHLYRSLAFLHCRMYTENGGIFVC-KTRHLQ 685
Query: 652 VVGGSRANGDRNGDAYSR-FNSLRTPPRIPQSPGRYSXXXXXXXXXXXXXXXXHDALVGT 710
+ GGS+ G F S R + S GR + + L G
Sbjct: 686 LAGGSKTTVSNAGIVGGLGFMSPRIQSPMHPSGGRGARGGARGGRGGFRVTRDREIL-GK 744
Query: 711 TVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVV------VSTPYRD 764
T+K+ GPYKG G V D + RVEL + + ++VDR+ I+ V VST Y
Sbjct: 745 TIKISGGPYKGAVGIVKDATESTARVELHTSCQTISVDRNHIAIVGVTGKEGSVST-YGR 803
Query: 765 TPRY--GMGSETPMHP---SRTPLHPYMTPMRDAGA-------TPIHDGMRTPMRDRAWN 812
TP G G++TP + S+TPL TP D TP HDG TP R AW+
Sbjct: 804 TPARTPGYGAQTPSYTAAGSKTPLVGSQTPNWDTDTRTPYGTMTPSHDGSMTP-RHGAWD 862
Query: 813 PYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPR 872
P +P R+N D + SP Y P +P Y+ + + TPG Y G+ R
Sbjct: 863 PTANTTPARNNDFDYSLEEPSPSPGYNPSTP---GYQMTSQFA--PQTPGTLY---GSDR 914
Query: 873 DSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDAMSPVIGADNE- 931
S S + +PSP P G TP+ ++Y + +P D+
Sbjct: 915 -SYSPFNPSPSPAPSPYPVGYMNTPSPSTY----SPNTPGGIPQSPYNPQTPGASLDSSM 969
Query: 932 GPWFMPDILVRRSGEESV-----VGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVP 986
G W DI VR + G+IR V +G C V L +++ + + V
Sbjct: 970 GDWCTTDIEVRIHTHDDTDLVGQTGIIRTV-SNGVCSVFLRQEDR--SVSIVSEHLAPVL 1026
Query: 987 PRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKL 1036
P D+ KI+ G R + G+++ DG + +++ ++K+L + L K+
Sbjct: 1027 PCNGDEFKIIYGDDRESVGRVLSKDGDVFVCRINE--EIKLLPINFLCKM 1074
>DICTYBASE|DDB_G0287661 [details] [associations]
symbol:spt5 "transcription initiation factor Spt5"
species:44689 "Dictyostelium discoideum" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR005825
InterPro:IPR017071 PIRSF:PIRSF036945 PROSITE:PS01108
dictyBase:DDB_G0287661 Pfam:PF00467 GO:GO:0005634 GO:GO:0045944
GenomeReviews:CM000154_GR EMBL:AAFI02000103 GO:GO:0005840
GO:GO:0000122 GO:GO:0003735 GO:GO:0003743 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0032784
InterPro:IPR005824 SMART:SM00739 eggNOG:COG5164 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 OMA:VGQTGII RefSeq:XP_637122.1
ProteinModelPortal:Q54K42 SMR:Q54K42 STRING:Q54K42 PRIDE:Q54K42
EnsemblProtists:DDB0238500 GeneID:8626217 KEGG:ddi:DDB_G0287661
Uniprot:Q54K42
Length = 1131
Score = 697 (250.4 bits), Expect = 6.9e-100, Sum P(2) = 6.9e-100
Identities = 225/746 (30%), Positives = 354/746 (47%)
Query: 327 KKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 386
K+K P RF N DE ++ I + + ++G F + G +KDGFL+K + S++
Sbjct: 407 KRKRTRPQARFFNPDEVEKMKIPLNQSTT-LSG-LFYILNGDKYKDGFLHKVFRVASVNI 464
Query: 387 QNIQPTFDELEKFRTPGE-----------NGESDIASLSTL-FANRKKGHFMKGDAVIVI 434
+ P+ +EL+KF+ GE N ++I+S+ L K HF KGD V VI
Sbjct: 465 DGVVPSLEELQKFQDRGEVQMDEEGQPIENISAEISSVPILPRLQTKSTHFAKGDTVKVI 524
Query: 435 KGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGAT 494
+GDLKNL VE V+E+ V I P + + A EL KYF+ G+HVK + G G T
Sbjct: 525 QGDLKNLMAIVESVEEDRVLILPIDEQIKDLFAFKPYELQKYFKVGDHVKAIGGRYEGET 584
Query: 495 GMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGV 554
GMVL+V+ +++LSD T +I+V D+ E +EV TG ++G+YEL DLV + + GV
Sbjct: 585 GMVLRVDDLQVVLLSDLTMSEIKVKPQDLQECTEVATGRLELGNYELHDLVQIGPHKVGV 644
Query: 555 IIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKS-NVQDRNKNTVAVKDVVRIVEGP 613
II+VE ++F+VL + V+ VKL+E+ K KS D + NT+ D++ +V+G
Sbjct: 645 IIKVERDSFKVLD---ESSNVSTVKLQEVGNKRRNKSFTTLDAHHNTITSGDLIEVVDGA 701
Query: 614 CKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSL 673
KGKQG + HI R LFI + E+ G ++ C ++GG++ N N +
Sbjct: 702 YKGKQGTILHISRNFLFIKSKDIFENGGVFVVRTQYCSLLGGNK-NKQSNIQQQQQQQQQ 760
Query: 674 RTPPRIPQSPGRYSXXXXXXXXXXXXXXXXH-DALVGTTVKVRLGPYKGYRGRVVDVKGQ 732
+ + GR D+ + V ++ G +KGY G V +
Sbjct: 761 QQQQQHSSQGGRGGGRGGYNNSGRGRGGRGREDSPLHKVVTIKKGSWKGYVGIVKECTDT 820
Query: 733 SVRVELESQMKVVTVDRSMIS-DNVVVSTPYRDTPRYGMGSETPMHPSRTPLH--PYMTP 789
V+VEL++ K + V ++ I+ N + T + + + SRTP+ P TP
Sbjct: 821 MVQVELQTNSKKINVLKTDIALPNERQQMQQQQTNDW----DQLYNASRTPMREDPSQTP 876
Query: 790 MRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYE 849
MR TP P R + Y S + G+ GS + G S ++
Sbjct: 877 MRMN--TPARSSHSDPWSMRESSDYFSSSSSSGS---GS-GSSSNNNSSSGGGRDSGSHN 930
Query: 850 APTPGSGWASTPGGNYS-----DAGTPRDSSSTYVNAPSPYLPSTPG-GQPMTPN-SASY 902
SG +TPG NYS TP D S+ +PY STP G PN + SY
Sbjct: 931 GNDYSSG--TTPGTNYSLYSPYTPNTPLDGSNRSDPNYTPYDRSTPSMGYGNDPNPTPSY 988
Query: 903 LXXXXXXXXXXXXXXXLDAMSPVIGADNEG------PWFMP----DILVRRSGEESVVGV 952
+ + +P +E P + +++ + SG+ +VV
Sbjct: 989 MSNYTPHEIPSSPYTPHNPQTPATPNSSEDHDEEVEPQYWSGTKIEVVFKDSGKHAVV-- 1046
Query: 953 IREVLPDGSCRV-VLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKL-IGV 1010
+ L D + RV +L + D ++ +++ +VPP K D++ I+ G G +G L I
Sbjct: 1047 -LDNLSDSTVRVEMLDTKEVIDNVSQ--SQLNLVPPAKKDRVVIVKGKLCGQSGNLFILT 1103
Query: 1011 DGTDGIVKVDVSLDVKILDMAILAKL 1036
D GIVK++ + D K+ M+ + KL
Sbjct: 1104 DENTGIVKMNSNFDFKVFKMSYIGKL 1129
Score = 328 (120.5 bits), Expect = 6.9e-100, Sum P(2) = 6.9e-100
Identities = 70/250 (28%), Positives = 134/250 (53%)
Query: 81 KAKRRSGSEFFDLEAQVXXXXXXXXXXXXXXFIVDGGAELPDEDGGRGIHRRPLLPREDE 140
++ ++S ++FF+ EA+ DG +L E + R +
Sbjct: 35 RSSKKSKNDFFEEEAEADDAEDDYEEDEGEA--EDGFEQLSSEQMKKD--REAYSSLRER 90
Query: 141 QEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVC 200
+ + +++Q +YA + YD++ D ++ LP W +KC +G E+
Sbjct: 91 DNGLSNILQKVQ-KYADNEDYGYDDDEGDYDED--LPK---QSYWRLKCRVGEEKLFVAS 144
Query: 201 LMQKCIDK------GSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVML 254
+MQK ++ + I+SV+A HL Y+Y+EA++E HV++A KG+ ++ S ++
Sbjct: 145 MMQKMLNNRNSNNPNDHVLIKSVMAPHHLSGYVYVEAEREVHVRQAIKGMTSLVSFTPVI 204
Query: 255 VPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQ 314
P++++ +V++ K +DL + WVR+++G YK D+ +++ D + RVTVKLIPR+DL
Sbjct: 205 TPLKDIIEVISANKKNVDLQKGGWVRIRLGKYKADIGQIISYDPSKSRVTVKLIPRLDLP 264
Query: 315 ALANKLEGRE 324
++A L+ +E
Sbjct: 265 SIAQSLQEKE 274
>UNIPROTKB|F2Z3T6 [details] [associations]
symbol:F2Z3T6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM01104 Pfam:PF00467 GO:GO:0006357 InterPro:IPR008991
SUPFAM:SSF50104 GO:GO:0032784 InterPro:IPR005824 SMART:SM00739
InterPro:IPR005100 Pfam:PF03439 GeneTree:ENSGT00440000037640
IPI:IPI00781937 ProteinModelPortal:F2Z3T6 PRIDE:F2Z3T6
Ensembl:ENSRNOT00000057470 Uniprot:F2Z3T6
Length = 888
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 245/718 (34%), Positives = 395/718 (55%)
Query: 212 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 268
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 14 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVK 72
Query: 269 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 327
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK
Sbjct: 73 EVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAK 132
Query: 328 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 386
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 133 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 187
Query: 387 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVE 446
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G V
Sbjct: 188 EGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKVL 245
Query: 447 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLI 506
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I
Sbjct: 246 SVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 305
Query: 507 ILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL 566
+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL
Sbjct: 306 LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPRTVGVIVRLERETFQVL 365
Query: 567 KGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 625
+V V+ + + K + + V D ++N + VKD+V++++GP G++G + H+Y
Sbjct: 366 NM---HGKVVTVRHQAVTQKKDNRFAVALDSDQNNIHVKDIVKVIDGPHSGREGEIRHLY 422
Query: 626 RGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRN--GDAYSRFNSLRTPPRIPQS 682
R F+H + +E+ G F+C K+ V+ GGS+ N ++ + + P P +
Sbjct: 423 RSFAFLHCKKLVENGGMFVC-KARHLVLAGGSKPRDVTNLTVGGFTPMSPRISSPMHPSA 481
Query: 683 PGRYSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQM 742
G++ ++ L+G TV++ GPYKGY G V D + RVEL S
Sbjct: 482 EGQHGGFGSPGGMSRGRGRRDNE-LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTC 540
Query: 743 KVVTVDRSMIS--DNVV---VSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA-- 793
+ ++VDR ++ D+ +++ Y TP YG S+TPM+ S RTP++ TP++D
Sbjct: 541 QTISVDRQRLTTVDSQRPGGMTSTYGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSR 598
Query: 794 ----GA-TPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSR 846
G+ TP+HDG RTP + AW+P P +P R + +E SPQ G+P +
Sbjct: 599 TPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQ 658
Query: 847 AYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 902
P P S + P N GTP ++ SPY +P G QP +P+ SY
Sbjct: 659 TPGYPDPSSPQVN-PQYNPQTPGTPAMYNTDQF---SPYAAPSPQGSYQP-SPSPQSY 711
Score = 215 (80.7 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 80/256 (31%), Positives = 123/256 (48%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 659 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 716
Query: 854 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 717 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 759
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 964
+ +P G + N W DI V+ R + +VG VIR V G C V
Sbjct: 760 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVT-GGMCSV 814
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVS- 1022
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGI+++D+
Sbjct: 815 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLED 871
Query: 1023 LDVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 872 QQIKILNLRFLGKLLE 887
>TAIR|locus:2179979 [details] [associations]
symbol:KTF1 "AT5G04290" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006306 "DNA methylation"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IMP] InterPro:IPR017071 EMBL:CP002688
GO:GO:0006357 GO:GO:0030422 GO:GO:0006306 GO:GO:0032784
InterPro:IPR005824 SMART:SM00739 InterPro:IPR005100
PANTHER:PTHR11125:SF7 Pfam:PF03439 IPI:IPI00544683
RefSeq:NP_196049.1 UniGene:At.54715 ProteinModelPortal:F4JW79
SMR:F4JW79 IntAct:F4JW79 PRIDE:F4JW79 EnsemblPlants:AT5G04290.1
GeneID:830308 KEGG:ath:AT5G04290 OMA:SSWGKKD Uniprot:F4JW79
Length = 1493
Score = 576 (207.8 bits), Expect = 1.3e-79, Sum P(3) = 1.3e-79
Identities = 124/296 (41%), Positives = 185/296 (62%)
Query: 134 LLPREDEQEDVEALERRIQARYARSS-HTEY-DEETTD-VEQQALLPSVRDPKLWMVKCA 190
+ P+E++ + E +R ++ RY S Y D++ D +E AL P+ +DP +W VKCA
Sbjct: 96 VFPKEEDLNE-EEFDRIMEERYKPGSGFLRYADDDIKDAIEMDALAPTSKDPPIWKVKCA 154
Query: 191 IGREREAAVCLMQKCIDK---GSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI 247
IGRER + CLM K ++ G++L+I SV ++DH+K +I+IEADKE V EACK L I
Sbjct: 155 IGRERRSVFCLMHKFVELRKIGTKLEIISVFSVDHVKGFIFIEADKEHDVLEACKSLVGI 214
Query: 248 YSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKL 307
Y+ +++L+P E ++L V+ K +S TW R+K G YKGDLA++V V + R + +KL
Sbjct: 215 YATRMVLLPKAETPNLLTVQKKTKKVSEGTWARVKNGKYKGDLAQIVAVSDTRNKALIKL 274
Query: 308 IPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGG 367
IPRID+QAL K G V +K P PR ++ E E ++ RRD TG FE++
Sbjct: 275 IPRIDIQALTQKYGGG-VTVQKGQTPAPRLISSSELEEFRPLIQVRRDRDTGITFEHLDS 333
Query: 368 MLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES-DIASLSTLFANRKK 422
++ KDG+LYK VS+ SIS+ + PT DEL KF TP + E+ D+ +S ++ +K
Sbjct: 334 LMLKDGYLYKKVSLDSISSWGVIPTKDELLKF-TPVDRKETGDVEWISEIYGEERK 388
Score = 302 (111.4 bits), Expect = 1.3e-79, Sum P(3) = 1.3e-79
Identities = 75/232 (32%), Positives = 120/232 (51%)
Query: 539 YELRDLVLLDNNSFGVIIRVES--EAFQVLKGVPDRPEVALVKLREIKC-KLEKKSNVQD 595
YEL +LV FG+I+ V+ + ++VLK D P V V +E++ + K D
Sbjct: 437 YELYNLVCFSRKDFGLIVGVDDKGDGYKVLKEGIDGPVVVTVGKKEMQNGPFDSKFTALD 496
Query: 596 RNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSC--VVV 653
NK ++V DVV+I +GP +GKQG V +YRGI+F++D E+ G+ C KS SC V +
Sbjct: 497 LNKKQISVNDVVKISKGPSEGKQGVVRQVYRGIIFLYDESEEENGGYFCCKSQSCEKVKL 556
Query: 654 GGSRANGDRNGDAYSRFNSLRTPPRIPQSPGR-YSXXXXXXXXXXXXXXXXHDALVGTTV 712
+N G + F + P+ P SP + + + +G +
Sbjct: 557 FTEESNEKTGGFDGTAFEDFVSSPKSPLSPEKEWQPRERYNSSNQGDIGSTYS--IGQKL 614
Query: 713 KVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----NVVVST 760
++R+GP KGY RV+ ++ V V+L+SQ K+ TV +++ N V+ST
Sbjct: 615 RIRVGPLKGYLCRVIALRYSDVTVKLDSQHKIFTVKSEHLAEVRDRNTVLST 666
Score = 113 (44.8 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
Identities = 61/268 (22%), Positives = 105/268 (39%)
Query: 642 FIC-AKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGR-YSXXXXXXXXXXXX 699
F C ++S V + +N G + F + P+ P SP + +
Sbjct: 544 FCCKSQSCEKVKLFTEESNEKTGGFDGTAFEDFVSSPKSPLSPEKEWQPRERYNSSNQGD 603
Query: 700 XXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----N 755
+ +G +++R+GP KGY RV+ ++ V V+L+SQ K+ TV +++ N
Sbjct: 604 IGSTYS--IGQKLRIRVGPLKGYLCRVIALRYSDVTVKLDSQHKIFTVKSEHLAEVRDRN 661
Query: 756 VVVST----------PY------RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIH 799
V+ST P+ T + +G+ T + T ++ I
Sbjct: 662 TVLSTSGDAGTGSFQPFGMLGTESSTGDWAIGAGTSSEGGNWNIGGPSTDSHES--LNIE 719
Query: 800 DGMRTPMRDR-AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWA 858
M R++ W P S D N +W + + P+ A + P + W
Sbjct: 720 RNMVQLCREKNPWGGSKPTSDVSPTVADDNTSAWANAAAE---NKPASASDQPGGWNPWG 776
Query: 859 STPGGNYSDAGTPR---DSSSTYVNAPS 883
TP S+AGT D+S++ V A S
Sbjct: 777 KTPA---SEAGTVSGWGDTSASNVEASS 801
Score = 54 (24.1 bits), Expect = 4.8e-23, Sum P(3) = 4.8e-23
Identities = 20/91 (21%), Positives = 42/91 (46%)
Query: 319 KLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKT 378
K +G++VA + + N E R+ +R+++R++P +FE + + G +
Sbjct: 4 KGKGKQVAGSDSYSGGQKRKNSVEFRDEGLRIKKRKNPEVLQFFEESAEVGYYGGSSDED 63
Query: 379 VS-MKSISAQNIQPTFDELEKFRTPGENGES 408
+ ++ +P +E K GE G+S
Sbjct: 64 DDGLGFLNDMEDEPEVEESSK-AGKGEKGKS 93
Score = 53 (23.7 bits), Expect = 1.3e-79, Sum P(3) = 1.3e-79
Identities = 25/86 (29%), Positives = 31/86 (36%)
Query: 794 GATPIHDGMRTPMRDR--AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAP 851
G+ P D T D AW + P PG W +P G P A EA
Sbjct: 734 GSKPTSDVSPTVADDNTSAWANAAAENKPAS--ASDQPGGW--NPW---GKTP--ASEAG 784
Query: 852 TPGSGWASTPGGNYSDAGTPRDSSST 877
T SGW T N + + +ST
Sbjct: 785 TV-SGWGDTSASNVEASSWEKQGAST 809
Score = 47 (21.6 bits), Expect = 5.6e-79, Sum P(3) = 5.6e-79
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 823 NW--EDGNPGS---WGTSPQYQPGSPPSRAYEAPTPGSGWASTPGG 863
+W +DG GS WG + GS + ++ GS W GG
Sbjct: 1252 SWGKQDGGGGSGSAWGKQNETSNGSSWGKQNDSGG-GSSWGKQDGG 1296
Score = 47 (21.6 bits), Expect = 5.6e-79, Sum P(3) = 5.6e-79
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 826 DGNPG--SWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGT 870
DG+ G SWG GS + ++ GS W GG D+G+
Sbjct: 1172 DGSGGGSSWGKQNDAGGGSSWGKQ-DSGGDGSSWGKQDGGG--DSGS 1215
Score = 47 (21.6 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
Identities = 29/119 (24%), Positives = 53/119 (44%)
Query: 403 GENGESDIASLSTLFANRKKGHFMKGDAVIVI----KGD-LKNLKGWVEKVDEENVHIRP 457
GE G SD S S+ + F + D +++ KGD K LK ++ V +
Sbjct: 425 GE-GSSDFKSESS-YELYNLVCFSRKDFGLIVGVDDKGDGYKVLKEGIDGPVVVTVG-KK 481
Query: 458 EMKGLPKTLAVNSKELCK-YFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKED 515
EM+ P + +L K + VK+ G G G+V +V + ++ + ++ +E+
Sbjct: 482 EMQNGPFDSKFTALDLNKKQISVNDVVKISKGPSEGKQGVVRQVYRGIIFLYDESEEEN 540
Score = 46 (21.3 bits), Expect = 7.2e-79, Sum P(3) = 7.2e-79
Identities = 16/53 (30%), Positives = 18/53 (33%)
Query: 825 EDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWAS-TPGGNYSDAGTPRDSSS 876
E N SWG GS + + GS W GG S G D S
Sbjct: 1271 ETSNGSSWGKQNDSGGGSSWGKQ-DGGGGGSSWGKQNDGGGGSSWGKQGDGGS 1322
Score = 45 (20.9 bits), Expect = 9.1e-79, Sum P(3) = 9.1e-79
Identities = 16/53 (30%), Positives = 19/53 (35%)
Query: 824 WEDGNPGS-WGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSS 875
W + GS WG GS + +A GS W G S G D S
Sbjct: 1123 WSKPSGGSSWGKQDGDGGGSSWGKENDAGG-GSSWGKQDNGVGSSWGKQNDGS 1174
Score = 45 (20.9 bits), Expect = 9.1e-79, Sum P(3) = 9.1e-79
Identities = 19/71 (26%), Positives = 25/71 (35%)
Query: 810 AWNPYTPMSPPRDNW----EDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWA---STPG 862
+W S +W + G SWG GS + GS W +T G
Sbjct: 1166 SWGKQNDGSGGGSSWGKQNDAGGGSSWGKQDSGGDGSSWGKQDGGGDSGSAWGKQNNTSG 1225
Query: 863 GN----YSDAG 869
G+ SDAG
Sbjct: 1226 GSSWGKQSDAG 1236
Score = 43 (20.2 bits), Expect = 1.5e-78, Sum P(3) = 1.5e-78
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 823 NWEDGNPGS-WGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGT 870
+W N GS WG + G + ++ G W GN D G+
Sbjct: 934 DWGQPNDGSSWG-----KKGDGAA-SWGKKDDGGSWGKKDDGNKDDGGS 976
Score = 43 (20.2 bits), Expect = 1.5e-78, Sum P(3) = 1.5e-78
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 821 RDNWEDGNPGSWGTSPQYQPGSPPSRAYE-APTPGSGWASTPGGNYSDAG 869
RD + G S+G S P S PS G G S+ G +DAG
Sbjct: 1105 RDQF--GRGSSFGNSEDPAPWSKPSGGSSWGKQDGDGGGSS-WGKENDAG 1151
Score = 43 (20.2 bits), Expect = 1.5e-78, Sum P(3) = 1.5e-78
Identities = 16/56 (28%), Positives = 19/56 (33%)
Query: 823 NWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTY 878
N +DG SWG Q S + GS W G S G D S +
Sbjct: 970 NKDDGG-SSWGKKDDGQKDDGGSSWEKKFDGGSSWGKKDDGG-SSWGKKDDGGSLW 1023
Score = 43 (20.2 bits), Expect = 7.5e-52, Sum P(3) = 7.5e-52
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 992 KIKIMGGPHRGATGKLIGVDGTDGIVKVD 1020
K++I GP +G ++I + +D VK+D
Sbjct: 613 KLRIRVGPLKGYLCRVIALRYSDVTVKLD 641
Score = 39 (18.8 bits), Expect = 3.9e-78, Sum P(3) = 3.9e-78
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 857 WA-STPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQP 894
W S P + S D++S + NA + P++ QP
Sbjct: 732 WGGSKPTSDVSPT-VADDNTSAWANAAAENKPASASDQP 769
Score = 39 (18.8 bits), Expect = 3.6e-51, Sum P(2) = 3.6e-51
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 952 VIREVLPDGSCRVVLGSSG--NG--DT-ITALP-NEIEIVPPRKTDKIKIMGGPHRGATG 1005
V++E + DG V +G NG D+ TAL N+ +I D +KI GP G G
Sbjct: 465 VLKEGI-DGPVVVTVGKKEMQNGPFDSKFTALDLNKKQI---SVNDVVKISKGPSEGKQG 520
Score = 37 (18.1 bits), Expect = 6.9e-52, Sum P(4) = 6.9e-52
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 592 NVQDRNKNTVAVKDVVRIVEGPCKGKQG 619
+ +D N N+ V D + +G GK+G
Sbjct: 921 SAEDSNANSKGVPDWGQPNDGSSWGKKG 948
>WB|WBGene00005015 [details] [associations]
symbol:spt-5 species:6239 "Caenorhabditis elegans"
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006351 GO:GO:0040035 GO:GO:0032968 EMBL:Z68752
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0250 GO:GO:0032044 HOGENOM:HOG000038564 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 EMBL:Z68316 PIR:T23467 RefSeq:NP_502283.1
ProteinModelPortal:Q21338 SMR:Q21338 STRING:Q21338 PaxDb:Q21338
EnsemblMetazoa:K08E4.1 GeneID:178143 KEGG:cel:CELE_K08E4.1
UCSC:K08E4.1 CTD:178143 WormBase:K08E4.1
GeneTree:ENSGT00440000037640 InParanoid:Q21338 OMA:PAYGNES
NextBio:899898 Uniprot:Q21338
Length = 1208
Score = 768 (275.4 bits), Expect = 1.5e-75, P = 1.5e-75
Identities = 244/795 (30%), Positives = 390/795 (49%)
Query: 145 EALERRIQARYARSSH-TEYDEETT---DVEQQALLPSVRDPKLWMVKCAIGREREAAVC 200
+ +++ + +Y + ++YD+E + D+ + + LPS +DP LW+VKC +G E+ A+
Sbjct: 142 DEVQKYFENKYKGDKNDSQYDDEDSAMDDISKNSHLPSTKDPNLWIVKCRMGEEKLVAMH 201
Query: 201 LMQKC--IDKGSE-LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPI 257
LM+KC ++ +E QI+SV+ + LK IYIEA K++HV A +G + + +VPI
Sbjct: 202 LMRKCLAVEHTNEPFQIKSVVVKEGLKGMIYIEAFKQSHVMSAIEGFSALNQFTITMVPI 261
Query: 258 REMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVD-VDNVRQRVTVKLIPRIDLQ-- 314
++M DVL V L ++VR+K YK DLA VVD VD + RV +KLIPR+D Q
Sbjct: 262 KDMVDVLRVVKDIPQLKLGSYVRLKRTMYKDDLA-VVDLVDIAQNRVNLKLIPRVDYQKR 320
Query: 315 --ALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKD 372
A+ + K++P P+ + D +E+ + D + FE G F+
Sbjct: 321 RGAMRTDADKNYKLKRRPM---PKLFDQDTIKEVGGEIVTDGDFLV---FE---GNHFRR 371
Query: 373 GFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVI 432
GFLYK + +I A ++PT ELEKF+ E+ + L T + F+ GD V
Sbjct: 372 GFLYKYFPINAIQADGVKPTLGELEKFQ---ESSDDLKRELETASLKDTENPFVPGDIVE 428
Query: 433 VIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAG 492
V G+L NL+G V VD V + P+ + L + + +N+ EL KYF+ G+H KV+SG G
Sbjct: 429 VKAGELVNLRGKVMTVDGTKVVMMPDQEDLKEAITLNAHELRKYFKEGDHAKVISGRYEG 488
Query: 493 ATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNN-S 551
TG++++V+ I+LSD E+++V D+ ++VTTG+ +G ++ DLV LD+ +
Sbjct: 489 HTGLIVRVKDSTAIVLSDLGMEELKVRVRDLQLCADVTTGVDSLGQFQYHDLVQLDHTGN 548
Query: 552 FGVIIRVESEAFQVLK--GVPDRPEVALVKLREIKCKLEKK-SNVQDRNKNTVAVKDVVR 608
GVI+R+E E +VL GV +R +K + I K + + + V D N++ KD+V+
Sbjct: 549 VGVIVRLEKEHLEVLNMHGVVNR-----IKPQAIIAKKDVRFAKVLDSQNNSIEAKDLVK 603
Query: 609 IVEGP-CKGKQ------GPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANG- 660
++ GP K ++ G V + +RG +F++ R ++ G + K ++ G +
Sbjct: 604 VIGGPNAKERETDEDPVGEVLYAFRGTVFVYSRKVTKNGGVLVCKPKQLILQGAKKTTST 663
Query: 661 ---DR----NGDAYSRFNSLRTPPRIPQSPGRYSXXXXXXXXXXXXXXXXHDALVGTTVK 713
R N A R +S PR PQ G S GT +
Sbjct: 664 PMVSRMASPNPMASPRHSSGGMTPRSPQD-GMSSRGSSGGQTPRQGGGGGRGGHFGTANQ 722
Query: 714 VRLGPYKGYRGRVVDVKGQSVRVELESQMKV-VTVDRSMISDNVVVS--TPYR----DTP 766
++ R + + G++VR+ ++ MK + R D V V T R D
Sbjct: 723 QKVR-------RDLTLIGKNVRI-IKGPMKGHFGIVRDATEDTVRVELHTQCRTISVDRA 774
Query: 767 RYGMGSETPMHPSRTPLHPYM----TPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRD 822
R + +T + + TPMRD+G TP++ G +TPM Y M+P D
Sbjct: 775 RVMVVGDTGITAGSGGGSSFYSSSKTPMRDSGKTPMY-GSKTPMYGAQTPMYGSMTPAYD 833
Query: 823 NWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAP 882
G G +P Y +P AY S + TP + TP S+ A
Sbjct: 834 GGRTPAYGEGGRTPAYGSKTP---AYGDLDEHSS-SRTPAYGNDSSRTPAYGSAD--GAR 887
Query: 883 SPYLPSTPGGQPMTP 897
+P ST GG+ TP
Sbjct: 888 TPAYGSTEGGR--TP 900
Score = 132 (51.5 bits), Expect = 0.00018, P = 0.00018
Identities = 68/305 (22%), Positives = 127/305 (41%)
Query: 759 STPYRDTPRYGMGSETPMHP-----SRTPLH--PY---MTPMRDAGATPIHDGMRTPMRD 808
S P R TP Y S+TP +P +RTP + Y ++P + A +D P R
Sbjct: 924 SMPSR-TPNYDSSSKTPAYPESEHSARTPAYNNDYDIPLSPAYEPDAPEAYDN--APART 980
Query: 809 RAWNPYTPMSPPRDNWEDGNPG---SWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNY 865
A + +P D +E+ +P T + G S Y++P P S TPG
Sbjct: 981 PA---FVSRTPGYDTYENSSPTYEPDAATKVEEDIGDTSSPTYDSP-PHSYVVPTPGAML 1036
Query: 866 SDAGTPRDSSSTYVNAPSPYLPSTPG-GQPMTPNSASYLXXXXXXXXXXXXXXXLDAMSP 924
+ A TP + +V+ P P TPG G A ++ +
Sbjct: 1037 NPA-TP---GAYHVDTPGFAAPMTPGSGGAYDQYVAPSPFAGYDSNNYNNADGAIEQIPD 1092
Query: 925 VIGADNEGPWFMPDILV-------RRSGEESVV-----GVIREVLPDGSCRVVLGSSGNG 972
A +G W + ++ V R +G E+++ G + +PD C + + +
Sbjct: 1093 HFLA--QGVWIVQNLCVQIKDHEGRFNGREAIIKDVTDGKVDVYMPDHKCNLEV----DF 1146
Query: 973 DTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL-DVKILDMA 1031
D +T + P+ D +++ G G +G+L+ +DG + +++ + D++++++
Sbjct: 1147 DQLTPMK-------PQPGDDARVIFGQDAGHSGQLVSMDGFEAVIRSQEDMSDMRVINIG 1199
Query: 1032 ILAKL 1036
+ K+
Sbjct: 1200 LCCKM 1204
>UNIPROTKB|Q21338 [details] [associations]
symbol:spt-5 "Transcription elongation factor SPT5"
species:6239 "Caenorhabditis elegans" [GO:0032044 "DSIF complex"
evidence=ISS] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006351 GO:GO:0040035 GO:GO:0032968 EMBL:Z68752
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0250 GO:GO:0032044 HOGENOM:HOG000038564 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 EMBL:Z68316 PIR:T23467 RefSeq:NP_502283.1
ProteinModelPortal:Q21338 SMR:Q21338 STRING:Q21338 PaxDb:Q21338
EnsemblMetazoa:K08E4.1 GeneID:178143 KEGG:cel:CELE_K08E4.1
UCSC:K08E4.1 CTD:178143 WormBase:K08E4.1
GeneTree:ENSGT00440000037640 InParanoid:Q21338 OMA:PAYGNES
NextBio:899898 Uniprot:Q21338
Length = 1208
Score = 768 (275.4 bits), Expect = 1.5e-75, P = 1.5e-75
Identities = 244/795 (30%), Positives = 390/795 (49%)
Query: 145 EALERRIQARYARSSH-TEYDEETT---DVEQQALLPSVRDPKLWMVKCAIGREREAAVC 200
+ +++ + +Y + ++YD+E + D+ + + LPS +DP LW+VKC +G E+ A+
Sbjct: 142 DEVQKYFENKYKGDKNDSQYDDEDSAMDDISKNSHLPSTKDPNLWIVKCRMGEEKLVAMH 201
Query: 201 LMQKC--IDKGSE-LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPI 257
LM+KC ++ +E QI+SV+ + LK IYIEA K++HV A +G + + +VPI
Sbjct: 202 LMRKCLAVEHTNEPFQIKSVVVKEGLKGMIYIEAFKQSHVMSAIEGFSALNQFTITMVPI 261
Query: 258 REMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVD-VDNVRQRVTVKLIPRIDLQ-- 314
++M DVL V L ++VR+K YK DLA VVD VD + RV +KLIPR+D Q
Sbjct: 262 KDMVDVLRVVKDIPQLKLGSYVRLKRTMYKDDLA-VVDLVDIAQNRVNLKLIPRVDYQKR 320
Query: 315 --ALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKD 372
A+ + K++P P+ + D +E+ + D + FE G F+
Sbjct: 321 RGAMRTDADKNYKLKRRPM---PKLFDQDTIKEVGGEIVTDGDFLV---FE---GNHFRR 371
Query: 373 GFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVI 432
GFLYK + +I A ++PT ELEKF+ E+ + L T + F+ GD V
Sbjct: 372 GFLYKYFPINAIQADGVKPTLGELEKFQ---ESSDDLKRELETASLKDTENPFVPGDIVE 428
Query: 433 VIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAG 492
V G+L NL+G V VD V + P+ + L + + +N+ EL KYF+ G+H KV+SG G
Sbjct: 429 VKAGELVNLRGKVMTVDGTKVVMMPDQEDLKEAITLNAHELRKYFKEGDHAKVISGRYEG 488
Query: 493 ATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNN-S 551
TG++++V+ I+LSD E+++V D+ ++VTTG+ +G ++ DLV LD+ +
Sbjct: 489 HTGLIVRVKDSTAIVLSDLGMEELKVRVRDLQLCADVTTGVDSLGQFQYHDLVQLDHTGN 548
Query: 552 FGVIIRVESEAFQVLK--GVPDRPEVALVKLREIKCKLEKK-SNVQDRNKNTVAVKDVVR 608
GVI+R+E E +VL GV +R +K + I K + + + V D N++ KD+V+
Sbjct: 549 VGVIVRLEKEHLEVLNMHGVVNR-----IKPQAIIAKKDVRFAKVLDSQNNSIEAKDLVK 603
Query: 609 IVEGP-CKGKQ------GPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANG- 660
++ GP K ++ G V + +RG +F++ R ++ G + K ++ G +
Sbjct: 604 VIGGPNAKERETDEDPVGEVLYAFRGTVFVYSRKVTKNGGVLVCKPKQLILQGAKKTTST 663
Query: 661 ---DR----NGDAYSRFNSLRTPPRIPQSPGRYSXXXXXXXXXXXXXXXXHDALVGTTVK 713
R N A R +S PR PQ G S GT +
Sbjct: 664 PMVSRMASPNPMASPRHSSGGMTPRSPQD-GMSSRGSSGGQTPRQGGGGGRGGHFGTANQ 722
Query: 714 VRLGPYKGYRGRVVDVKGQSVRVELESQMKV-VTVDRSMISDNVVVS--TPYR----DTP 766
++ R + + G++VR+ ++ MK + R D V V T R D
Sbjct: 723 QKVR-------RDLTLIGKNVRI-IKGPMKGHFGIVRDATEDTVRVELHTQCRTISVDRA 774
Query: 767 RYGMGSETPMHPSRTPLHPYM----TPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRD 822
R + +T + + TPMRD+G TP++ G +TPM Y M+P D
Sbjct: 775 RVMVVGDTGITAGSGGGSSFYSSSKTPMRDSGKTPMY-GSKTPMYGAQTPMYGSMTPAYD 833
Query: 823 NWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAP 882
G G +P Y +P AY S + TP + TP S+ A
Sbjct: 834 GGRTPAYGEGGRTPAYGSKTP---AYGDLDEHSS-SRTPAYGNDSSRTPAYGSAD--GAR 887
Query: 883 SPYLPSTPGGQPMTP 897
+P ST GG+ TP
Sbjct: 888 TPAYGSTEGGR--TP 900
Score = 132 (51.5 bits), Expect = 0.00018, P = 0.00018
Identities = 68/305 (22%), Positives = 127/305 (41%)
Query: 759 STPYRDTPRYGMGSETPMHP-----SRTPLH--PY---MTPMRDAGATPIHDGMRTPMRD 808
S P R TP Y S+TP +P +RTP + Y ++P + A +D P R
Sbjct: 924 SMPSR-TPNYDSSSKTPAYPESEHSARTPAYNNDYDIPLSPAYEPDAPEAYDN--APART 980
Query: 809 RAWNPYTPMSPPRDNWEDGNPG---SWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNY 865
A + +P D +E+ +P T + G S Y++P P S TPG
Sbjct: 981 PA---FVSRTPGYDTYENSSPTYEPDAATKVEEDIGDTSSPTYDSP-PHSYVVPTPGAML 1036
Query: 866 SDAGTPRDSSSTYVNAPSPYLPSTPG-GQPMTPNSASYLXXXXXXXXXXXXXXXLDAMSP 924
+ A TP + +V+ P P TPG G A ++ +
Sbjct: 1037 NPA-TP---GAYHVDTPGFAAPMTPGSGGAYDQYVAPSPFAGYDSNNYNNADGAIEQIPD 1092
Query: 925 VIGADNEGPWFMPDILV-------RRSGEESVV-----GVIREVLPDGSCRVVLGSSGNG 972
A +G W + ++ V R +G E+++ G + +PD C + + +
Sbjct: 1093 HFLA--QGVWIVQNLCVQIKDHEGRFNGREAIIKDVTDGKVDVYMPDHKCNLEV----DF 1146
Query: 973 DTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL-DVKILDMA 1031
D +T + P+ D +++ G G +G+L+ +DG + +++ + D++++++
Sbjct: 1147 DQLTPMK-------PQPGDDARVIFGQDAGHSGQLVSMDGFEAVIRSQEDMSDMRVINIG 1199
Query: 1032 ILAKL 1036
+ K+
Sbjct: 1200 LCCKM 1204
>UNIPROTKB|H9L0H1 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9031 "Gallus gallus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0032044 "DSIF complex" evidence=IEA] [GO:0032785 "negative
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM01104 Pfam:PF00467 GO:GO:0006357
GO:GO:0032784 InterPro:IPR005824 SMART:SM00739 InterPro:IPR022581
Pfam:PF11942 GeneTree:ENSGT00440000037640 EMBL:AADN02036678
EMBL:AADN02036679 EMBL:AADN02036680 Ensembl:ENSGALT00000023124
Uniprot:H9L0H1
Length = 962
Score = 401 (146.2 bits), Expect = 5.1e-69, Sum P(3) = 5.1e-69
Identities = 113/349 (32%), Positives = 167/349 (47%)
Query: 574 EVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIH 632
+V V+ + + K + + V D +N + VKD+V++++GP G++G + H++RG F+H
Sbjct: 446 KVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLH 505
Query: 633 DRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRI--PQSPGRYSXX 689
+ +E+ G F+C K+ V+ GGS+ N S F + PRI P P
Sbjct: 506 CKKLVENGGMFVC-KTRHLVLAGGSKPRDVTNFTVGS-FAPMS--PRISSPMHPSGAGQR 561
Query: 690 XXXXXXXXXXXXXXHDA-LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVD 748
D L+G TV++ GPYKGY G V D + RVEL S + ++VD
Sbjct: 562 GGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVD 621
Query: 749 RSMISD----------NVVVSTP-Y-RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGAT 796
R ++ + TP Y TP YG GS TPM+ S+TPLH T
Sbjct: 622 RQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLHDGDRTPHYGSQT 681
Query: 797 PIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPG 854
P+HDG RTP + AW+P P +P R +++E G SPQ G+P + P P
Sbjct: 682 PLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGTPNPQTPGYPDPS 741
Query: 855 SGWASTPGGNYSDAGTPRDSSSTYVNAPSPY-LPSTPGGQPMTPNSASY 902
S + P N GTP ++ SPY +PS G +P+ SY
Sbjct: 742 SPQVTQPY-NPQTPGTPAMYNTDQF---SPYAVPSPQGSYQPSPSPQSY 786
Score = 281 (104.0 bits), Expect = 5.1e-69, Sum P(3) = 5.1e-69
Identities = 66/192 (34%), Positives = 110/192 (57%)
Query: 254 LVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDL 313
+VPI+EMTDVL V + +L +WVR+K G YK D+A+V V+ + ++++K+IPRID
Sbjct: 229 MVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQNQISLKMIPRIDF 288
Query: 314 QALANKLEGRE-VAKKKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFK 371
+ ++ ++ AK+K F PP R + ++ R L V GD+ G +
Sbjct: 289 DRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSR 343
Query: 372 DGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAV 431
GFL+K+ +M ++ + ++PT ELEKF E + ++ + ST ++ +F GD V
Sbjct: 344 KGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNV 401
Query: 432 IVIKGDLKNLKG 443
V +G+L NL+G
Sbjct: 402 EVCEGELINLQG 413
Score = 214 (80.4 bits), Expect = 1.4e-48, Sum P(3) = 1.4e-48
Identities = 81/255 (31%), Positives = 123/255 (48%)
Query: 796 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 853
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 734 TPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSPYAV-PSPQGSYQP-SPSPQSYHQVAP 791
Query: 854 GS-GWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 911
G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 792 SPVGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 834
Query: 912 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RS---GEESV--VGVIREVLPDGSCRV 964
+ +P G + + W DI V+ R ++V GVIR V G C V
Sbjct: 835 ----PGGYNPHTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVT-GGMCSV 889
Query: 965 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 1023
L S + + ++ +E +E V P K++K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 890 YLKDS---EKVVSISSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDE 946
Query: 1024 DVKILDMAILAKLAQ 1038
+KIL++ L KL +
Sbjct: 947 QLKILNLRFLGKLLE 961
Score = 153 (58.9 bits), Expect = 5.1e-69, Sum P(3) = 5.1e-69
Identities = 40/90 (44%), Positives = 50/90 (55%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALL 176
DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LL
Sbjct: 113 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLL 168
Query: 177 PSVRDPKLWMVKCAIGREREAAVCLMQKCI 206
P V+DP LW VKC IG ER A+ LM+K I
Sbjct: 169 PGVKDPNLWTVKCKIGEERATAIALMRKFI 198
Score = 69 (29.3 bits), Expect = 7.6e-47, Sum P(3) = 7.6e-47
Identities = 33/112 (29%), Positives = 47/112 (41%)
Query: 390 QPTFDELEKFRTPGENGESDIASLSTLFANR--KKGHFMKGDAV-IVIKGDLKNLKGWVE 446
Q FD EK R+ G + SD NR +KG K A+ VI +K +E
Sbjct: 312 QRLFDA-EKIRSLGGDVASD-GDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELE 369
Query: 447 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVL 498
K +++ PE L KE F+PG++V+V G G +L
Sbjct: 370 KFEDQ-----PEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKIL 416
Score = 55 (24.4 bits), Expect = 4.9e-32, Sum P(3) = 4.9e-32
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 459 MKGLPKTLAVNSKELCKYFEP--GNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKE 514
+K K ++++S+ L + P N VKV+ G ATG++L ++ I+ D ++
Sbjct: 891 LKDSEKVVSISSEHL-EPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQ 947
Score = 52 (23.4 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 712 VKVRLGPYKGYRGRVVDVKGQS--VRVELESQMKVVTV 747
VKV LG + G ++ + G+ VR++L+ Q+K++ +
Sbjct: 916 VKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNL 953
Score = 47 (21.6 bits), Expect = 3.3e-31, Sum P(3) = 3.3e-31
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 991 DKIKIMGGPHRGATGKL 1007
D +K++ GPH G G++
Sbjct: 478 DIVKVIDGPHSGREGEI 494
Score = 40 (19.1 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 272 DLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRV 303
DL T VR+ G YKG + V D RV
Sbjct: 579 DLIGQT-VRISQGPYKGYIGVVKDATESTARV 609
>CGD|CAL0004616 [details] [associations]
symbol:SPT5 species:5476 "Candida albicans" [GO:2001208
"negative regulation of transcription elongation from RNA
polymerase I promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008298 "intracellular mRNA
localization" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0090262 "regulation of
transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:2000232 "regulation of rRNA processing" evidence=IEA]
[GO:2001209 "positive regulation of transcription elongation from
RNA polymerase I promoter" evidence=IEA] [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=IEA]
[GO:0001042 "RNA polymerase I core binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
[GO:0001179 "RNA polymerase I transcription factor binding"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0032044
"DSIF complex" evidence=IEA] [GO:0033553 "rDNA heterochromatin"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0009267 "cellular response
to starvation" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR017071 PIRSF:PIRSF036945 CGD:CAL0004616 Pfam:PF00467
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0006397
GO:GO:0006357 GO:GO:0006351 GO:GO:0009267 EMBL:AACQ01000008
EMBL:AACQ01000007 GO:GO:0036170 InterPro:IPR008991 SUPFAM:SSF50104
GO:GO:0032784 InterPro:IPR005824 SMART:SM00739 eggNOG:COG5164
KO:K15172 InterPro:IPR022581 InterPro:IPR005100
PANTHER:PTHR11125:SF7 Pfam:PF03439 Pfam:PF11942 RefSeq:XP_722364.1
RefSeq:XP_722503.1 ProteinModelPortal:Q5ALX3 STRING:Q5ALX3
GeneID:3635847 GeneID:3635993 KEGG:cal:CaO19.1453
KEGG:cal:CaO19.9028 Uniprot:Q5ALX3
Length = 956
Score = 641 (230.7 bits), Expect = 7.1e-63, Sum P(3) = 7.1e-63
Identities = 220/790 (27%), Positives = 376/790 (47%)
Query: 119 ELPDEDGGRGIHRRPLLPRED-EQEDVEALERRIQARYARSSHTEYDEETT---DVEQQA 174
++P +D +HR+ R+ E +D E L ++ RY R +H+ Y ET V Q+
Sbjct: 149 KMPQDDR---LHRQYDNRRQQAEDQDAEQLAETLKQRY-RKTHSVYRGETAASGTVSQKL 204
Query: 175 LLPSVRDPKLWMVKCAIGREREAAVCLMQK--CIDK-GSELQIRSVIALDHLKNYIYIEA 231
L+PS+ DP ++ ++C GRE+E L +K +++ G+ L I +V D YIYIEA
Sbjct: 205 LMPSINDPSIYAIRCTPGREKELVRKLYEKKRTLERQGNPLDILTVFQRDAFTGYIYIEA 264
Query: 232 DKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLA-VESKAIDLSRDTWVRMKIGNYKGDL 290
+ + +A G+ N++ + +LVP++E D+L V+S +++ +VR+K G Y+GDL
Sbjct: 265 KRPDAIDKALVGMVNVFVRDKLLVPVKEYPDLLKQVKSSDVEIRPGIYVRIKRGIYRGDL 324
Query: 291 AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELH-IR 349
A V ++ V +++PR+D +V K K P P + +AR +
Sbjct: 325 AIVDNLSENGLDVRCQVVPRLDYGQNDEIGPDGKVIKSK-IKPLPALFSEQKARMYDPYK 383
Query: 350 VERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPG-ENGES 408
++ R P + Y G + DG+LYK ++ I +++ PT +EL++F+ E+G +
Sbjct: 384 LQMGRVPNSFIY----RGNEYYDGYLYKDFKLQFIQTKDVNPTLEELDRFQNQNDEDGLN 439
Query: 409 DIASLSTLFANRK-KGH----FMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLP 463
A +TL N +G F GD V + +G+ G V + + I+ G P
Sbjct: 440 LQAIAATLKGNNAGEGKSSTAFQPGDKVEIRRGEQAKTIGIVVETALNEITIKVTDSGDP 499
Query: 464 K----TLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVF 519
+ L V + +L K F G+HV++V G TG+V+K++ ++I+SD TKED+RVF
Sbjct: 500 RFVDQRLTVPANDLRKIFYEGDHVRIVEGKHFDETGLVIKIDGDSVVIVSDQTKEDVRVF 559
Query: 520 ADDVVESSEVTTGITKIGD-YELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALV 578
A+ +V++++ ++ + Y+++DLV L + GVII+ E F VL + L+
Sbjct: 560 ANYLVKATDASSNFDLLNSKYDIKDLVELSGLTVGVIIKAEKNIFDVLT-----TDGRLI 614
Query: 579 KLRE--IKCKLEKKSNVQ---DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHD 633
+R+ I KL++ Q DRN T+ V D V+ + G K ++G + HIY+ LFI
Sbjct: 615 SVRQSGIASKLKQSRREQVATDRNGTTIRVGDTVKELLGE-KSREGAILHIYKNALFIKS 673
Query: 634 RHHLEHAGFICAKSSSCVVVGGSRANGDRN-GDAYSRFN-SLRTPPRIPQSPGRYSXXXX 691
+E+ G A + V + ++ G + N +LR P +P
Sbjct: 674 NEIVENLGIFVANRMNVTTVATKDSTVSKSLGPDLTSMNPNLRLP-----NP-------- 720
Query: 692 XXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSM 751
D L+ V V G YKG +G+V + R+EL ++ K + V ++
Sbjct: 721 VAVAGLKTRVGGRDKLLYKDVAVTSGSYKGLKGKVTEADDLYARIELHTKSKKIKVLKNN 780
Query: 752 ISDNVVVS---TPYRD----TPRYGMGSETPMHPS----RTPLHPYMTPMRDAGATPIHD 800
+ NV+V PY P + + P + S R+ + MTP AG +
Sbjct: 781 L--NVIVHGQPVPYLRFIGAAPEFSQPTP-PTYGSSSGGRSAWNGGMTPSVSAG----NG 833
Query: 801 GMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEA-PTPGSGWAS 859
G+ R P + G +WG + + G+ S A+ GS W
Sbjct: 834 GVSAWGGSRGGFGGDGGKTPA--YGAGGASTWGGASAWGGGAGGSSAWGGIKGAGSVWDR 891
Query: 860 TPGGNYSDAG 869
+ GG+ + +G
Sbjct: 892 SKGGSSASSG 901
Score = 349 (127.9 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 106/361 (29%), Positives = 182/361 (50%)
Query: 81 KAKRRSGSEFFDLEAQVXXXXXXXXXXXXXX------FIVDGGA------ELPDEDGGRG 128
+ +RR ++FFD+EA+V FI D A ++P +D
Sbjct: 99 RKRRRGANQFFDIEAEVDDEEEDEEDEDEEAELMREEFITDDHAPVETVEKMPQDDR--- 155
Query: 129 IHRRPLLPRED-EQEDVEALERRIQARYARSSHTEYDEETT---DVEQQALLPSVRDPKL 184
+HR+ R+ E +D E L ++ RY R +H+ Y ET V Q+ L+PS+ DP +
Sbjct: 156 LHRQYDNRRQQAEDQDAEQLAETLKQRY-RKTHSVYRGETAASGTVSQKLLMPSINDPSI 214
Query: 185 WMVKCAIGREREAAVCLMQK--CIDK-GSELQIRSVIALDHLKNYIYIEADKEAHVKEAC 241
+ ++C GRE+E L +K +++ G+ L I +V D YIYIEA + + +A
Sbjct: 215 YAIRCTPGREKELVRKLYEKKRTLERQGNPLDILTVFQRDAFTGYIYIEAKRPDAIDKAL 274
Query: 242 KGLRNIYSQKVMLVPIREMTDVLA-VESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVR 300
G+ N++ + +LVP++E D+L V+S +++ +VR+K G Y+GDLA V ++
Sbjct: 275 VGMVNVFVRDKLLVPVKEYPDLLKQVKSSDVEIRPGIYVRIKRGIYRGDLAIVDNLSENG 334
Query: 301 QRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELH-IRVERRRDPMTG 359
V +++PR+D +V K K P P + +AR +++ R P +
Sbjct: 335 LDVRCQVVPRLDYGQNDEIGPDGKVIKSK-IKPLPALFSEQKARMYDPYKLQMGRVPNSF 393
Query: 360 DYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPG-ENGESDIASLSTLFA 418
Y G + DG+LYK ++ I +++ PT +EL++F+ E+G + A +TL
Sbjct: 394 IY----RGNEYYDGYLYKDFKLQFIQTKDVNPTLEELDRFQNQNDEDGLNLQAIAATLKG 449
Query: 419 N 419
N
Sbjct: 450 N 450
Score = 83 (34.3 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 44/179 (24%), Positives = 67/179 (37%)
Query: 705 DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRD 764
D L+ V V G YKG +G+V + R+EL ++ K + V ++ + NV+V +
Sbjct: 734 DKLLYKDVAVTSGSYKGLKGKVTEADDLYARIELHTKSKKIKVLKNNL--NVIVHG--QP 789
Query: 765 TPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNW 824
P P TP P T +G +G TP + R +
Sbjct: 790 VPYLRFIGAAPEFSQPTP--P--TYGSSSGGRSAWNGGMTPSVSAGNGGVSAWGGSRGGF 845
Query: 825 EDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPS 883
G G G +P Y G + + G S+ G AG+ D S +A S
Sbjct: 846 --GGDG--GKTPAYGAGGASTWGGASAWGGGAGGSSAWGGIKGAGSVWDRSKGGSSASS 900
Score = 63 (27.2 bits), Expect = 3.0e-29, Sum P(2) = 3.0e-29
Identities = 26/121 (21%), Positives = 55/121 (45%)
Query: 919 LDAMSPVIGADNEGPW-----FMPD--ILVRRSGEESVVGVIREVLPDGSCRVVLGSSGN 971
L A++ + +N G F P + +RR + +G++ E + + + SG+
Sbjct: 440 LQAIAATLKGNNAGEGKSSTAFQPGDKVEIRRGEQAKTIGIVVETALN-EITIKVTDSGD 498
Query: 972 ----GDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL-DVK 1026
+T N++ + + D ++I+ G H TG +I +DG ++ D + DV+
Sbjct: 499 PRFVDQRLTVPANDLRKIF-YEGDHVRIVEGKHFDETGLVIKIDGDSVVIVSDQTKEDVR 557
Query: 1027 I 1027
+
Sbjct: 558 V 558
Score = 52 (23.4 bits), Expect = 7.1e-63, Sum P(3) = 7.1e-63
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 119 ELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQ 173
E+ + D GR + R E EQE+ E+ +A E +EE D E++
Sbjct: 38 EVENPDDGRSLKRTR---EESEQEENNEKEQDQEAGQDEEEQDEDEEEEEDDEEE 89
Score = 44 (20.5 bits), Expect = 4.9e-62, Sum P(3) = 4.9e-62
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 138 EDEQEDVEAL-ERRIQARYARSSHTEYDEETTDVEQQ 173
EDE+++V + +RR A E D+E D E +
Sbjct: 89 EDEEDEVSSRRKRRRGANQFFDIEAEVDDEEEDEEDE 125
Score = 42 (19.8 bits), Expect = 7.1e-63, Sum P(3) = 7.1e-63
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 824 WEDGNPGSWGT 834
WE GN +WG+
Sbjct: 935 WEGGNNTTWGS 945
>UNIPROTKB|Q5ALX3 [details] [associations]
symbol:SPT5 "Transcription elongation factor SPT5"
species:237561 "Candida albicans SC5314" [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR017071 PIRSF:PIRSF036945 CGD:CAL0004616 Pfam:PF00467
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0006397
GO:GO:0006357 GO:GO:0006351 GO:GO:0009267 EMBL:AACQ01000008
EMBL:AACQ01000007 GO:GO:0036170 InterPro:IPR008991 SUPFAM:SSF50104
GO:GO:0032784 InterPro:IPR005824 SMART:SM00739 eggNOG:COG5164
KO:K15172 InterPro:IPR022581 InterPro:IPR005100
PANTHER:PTHR11125:SF7 Pfam:PF03439 Pfam:PF11942 RefSeq:XP_722364.1
RefSeq:XP_722503.1 ProteinModelPortal:Q5ALX3 STRING:Q5ALX3
GeneID:3635847 GeneID:3635993 KEGG:cal:CaO19.1453
KEGG:cal:CaO19.9028 Uniprot:Q5ALX3
Length = 956
Score = 641 (230.7 bits), Expect = 7.1e-63, Sum P(3) = 7.1e-63
Identities = 220/790 (27%), Positives = 376/790 (47%)
Query: 119 ELPDEDGGRGIHRRPLLPRED-EQEDVEALERRIQARYARSSHTEYDEETT---DVEQQA 174
++P +D +HR+ R+ E +D E L ++ RY R +H+ Y ET V Q+
Sbjct: 149 KMPQDDR---LHRQYDNRRQQAEDQDAEQLAETLKQRY-RKTHSVYRGETAASGTVSQKL 204
Query: 175 LLPSVRDPKLWMVKCAIGREREAAVCLMQK--CIDK-GSELQIRSVIALDHLKNYIYIEA 231
L+PS+ DP ++ ++C GRE+E L +K +++ G+ L I +V D YIYIEA
Sbjct: 205 LMPSINDPSIYAIRCTPGREKELVRKLYEKKRTLERQGNPLDILTVFQRDAFTGYIYIEA 264
Query: 232 DKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLA-VESKAIDLSRDTWVRMKIGNYKGDL 290
+ + +A G+ N++ + +LVP++E D+L V+S +++ +VR+K G Y+GDL
Sbjct: 265 KRPDAIDKALVGMVNVFVRDKLLVPVKEYPDLLKQVKSSDVEIRPGIYVRIKRGIYRGDL 324
Query: 291 AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELH-IR 349
A V ++ V +++PR+D +V K K P P + +AR +
Sbjct: 325 AIVDNLSENGLDVRCQVVPRLDYGQNDEIGPDGKVIKSK-IKPLPALFSEQKARMYDPYK 383
Query: 350 VERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPG-ENGES 408
++ R P + Y G + DG+LYK ++ I +++ PT +EL++F+ E+G +
Sbjct: 384 LQMGRVPNSFIY----RGNEYYDGYLYKDFKLQFIQTKDVNPTLEELDRFQNQNDEDGLN 439
Query: 409 DIASLSTLFANRK-KGH----FMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLP 463
A +TL N +G F GD V + +G+ G V + + I+ G P
Sbjct: 440 LQAIAATLKGNNAGEGKSSTAFQPGDKVEIRRGEQAKTIGIVVETALNEITIKVTDSGDP 499
Query: 464 K----TLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVF 519
+ L V + +L K F G+HV++V G TG+V+K++ ++I+SD TKED+RVF
Sbjct: 500 RFVDQRLTVPANDLRKIFYEGDHVRIVEGKHFDETGLVIKIDGDSVVIVSDQTKEDVRVF 559
Query: 520 ADDVVESSEVTTGITKIGD-YELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALV 578
A+ +V++++ ++ + Y+++DLV L + GVII+ E F VL + L+
Sbjct: 560 ANYLVKATDASSNFDLLNSKYDIKDLVELSGLTVGVIIKAEKNIFDVLT-----TDGRLI 614
Query: 579 KLRE--IKCKLEKKSNVQ---DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHD 633
+R+ I KL++ Q DRN T+ V D V+ + G K ++G + HIY+ LFI
Sbjct: 615 SVRQSGIASKLKQSRREQVATDRNGTTIRVGDTVKELLGE-KSREGAILHIYKNALFIKS 673
Query: 634 RHHLEHAGFICAKSSSCVVVGGSRANGDRN-GDAYSRFN-SLRTPPRIPQSPGRYSXXXX 691
+E+ G A + V + ++ G + N +LR P +P
Sbjct: 674 NEIVENLGIFVANRMNVTTVATKDSTVSKSLGPDLTSMNPNLRLP-----NP-------- 720
Query: 692 XXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSM 751
D L+ V V G YKG +G+V + R+EL ++ K + V ++
Sbjct: 721 VAVAGLKTRVGGRDKLLYKDVAVTSGSYKGLKGKVTEADDLYARIELHTKSKKIKVLKNN 780
Query: 752 ISDNVVVS---TPYRD----TPRYGMGSETPMHPS----RTPLHPYMTPMRDAGATPIHD 800
+ NV+V PY P + + P + S R+ + MTP AG +
Sbjct: 781 L--NVIVHGQPVPYLRFIGAAPEFSQPTP-PTYGSSSGGRSAWNGGMTPSVSAG----NG 833
Query: 801 GMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEA-PTPGSGWAS 859
G+ R P + G +WG + + G+ S A+ GS W
Sbjct: 834 GVSAWGGSRGGFGGDGGKTPA--YGAGGASTWGGASAWGGGAGGSSAWGGIKGAGSVWDR 891
Query: 860 TPGGNYSDAG 869
+ GG+ + +G
Sbjct: 892 SKGGSSASSG 901
Score = 349 (127.9 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 106/361 (29%), Positives = 182/361 (50%)
Query: 81 KAKRRSGSEFFDLEAQVXXXXXXXXXXXXXX------FIVDGGA------ELPDEDGGRG 128
+ +RR ++FFD+EA+V FI D A ++P +D
Sbjct: 99 RKRRRGANQFFDIEAEVDDEEEDEEDEDEEAELMREEFITDDHAPVETVEKMPQDDR--- 155
Query: 129 IHRRPLLPRED-EQEDVEALERRIQARYARSSHTEYDEETT---DVEQQALLPSVRDPKL 184
+HR+ R+ E +D E L ++ RY R +H+ Y ET V Q+ L+PS+ DP +
Sbjct: 156 LHRQYDNRRQQAEDQDAEQLAETLKQRY-RKTHSVYRGETAASGTVSQKLLMPSINDPSI 214
Query: 185 WMVKCAIGREREAAVCLMQK--CIDK-GSELQIRSVIALDHLKNYIYIEADKEAHVKEAC 241
+ ++C GRE+E L +K +++ G+ L I +V D YIYIEA + + +A
Sbjct: 215 YAIRCTPGREKELVRKLYEKKRTLERQGNPLDILTVFQRDAFTGYIYIEAKRPDAIDKAL 274
Query: 242 KGLRNIYSQKVMLVPIREMTDVLA-VESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVR 300
G+ N++ + +LVP++E D+L V+S +++ +VR+K G Y+GDLA V ++
Sbjct: 275 VGMVNVFVRDKLLVPVKEYPDLLKQVKSSDVEIRPGIYVRIKRGIYRGDLAIVDNLSENG 334
Query: 301 QRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELH-IRVERRRDPMTG 359
V +++PR+D +V K K P P + +AR +++ R P +
Sbjct: 335 LDVRCQVVPRLDYGQNDEIGPDGKVIKSK-IKPLPALFSEQKARMYDPYKLQMGRVPNSF 393
Query: 360 DYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPG-ENGESDIASLSTLFA 418
Y G + DG+LYK ++ I +++ PT +EL++F+ E+G + A +TL
Sbjct: 394 IY----RGNEYYDGYLYKDFKLQFIQTKDVNPTLEELDRFQNQNDEDGLNLQAIAATLKG 449
Query: 419 N 419
N
Sbjct: 450 N 450
Score = 83 (34.3 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 44/179 (24%), Positives = 67/179 (37%)
Query: 705 DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRD 764
D L+ V V G YKG +G+V + R+EL ++ K + V ++ + NV+V +
Sbjct: 734 DKLLYKDVAVTSGSYKGLKGKVTEADDLYARIELHTKSKKIKVLKNNL--NVIVHG--QP 789
Query: 765 TPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNW 824
P P TP P T +G +G TP + R +
Sbjct: 790 VPYLRFIGAAPEFSQPTP--P--TYGSSSGGRSAWNGGMTPSVSAGNGGVSAWGGSRGGF 845
Query: 825 EDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPS 883
G G G +P Y G + + G S+ G AG+ D S +A S
Sbjct: 846 --GGDG--GKTPAYGAGGASTWGGASAWGGGAGGSSAWGGIKGAGSVWDRSKGGSSASS 900
Score = 63 (27.2 bits), Expect = 3.0e-29, Sum P(2) = 3.0e-29
Identities = 26/121 (21%), Positives = 55/121 (45%)
Query: 919 LDAMSPVIGADNEGPW-----FMPD--ILVRRSGEESVVGVIREVLPDGSCRVVLGSSGN 971
L A++ + +N G F P + +RR + +G++ E + + + SG+
Sbjct: 440 LQAIAATLKGNNAGEGKSSTAFQPGDKVEIRRGEQAKTIGIVVETALN-EITIKVTDSGD 498
Query: 972 ----GDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL-DVK 1026
+T N++ + + D ++I+ G H TG +I +DG ++ D + DV+
Sbjct: 499 PRFVDQRLTVPANDLRKIF-YEGDHVRIVEGKHFDETGLVIKIDGDSVVIVSDQTKEDVR 557
Query: 1027 I 1027
+
Sbjct: 558 V 558
Score = 52 (23.4 bits), Expect = 7.1e-63, Sum P(3) = 7.1e-63
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 119 ELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQ 173
E+ + D GR + R E EQE+ E+ +A E +EE D E++
Sbjct: 38 EVENPDDGRSLKRTR---EESEQEENNEKEQDQEAGQDEEEQDEDEEEEEDDEEE 89
Score = 44 (20.5 bits), Expect = 4.9e-62, Sum P(3) = 4.9e-62
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 138 EDEQEDVEAL-ERRIQARYARSSHTEYDEETTDVEQQ 173
EDE+++V + +RR A E D+E D E +
Sbjct: 89 EDEEDEVSSRRKRRRGANQFFDIEAEVDDEEEDEEDE 125
Score = 42 (19.8 bits), Expect = 7.1e-63, Sum P(3) = 7.1e-63
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 824 WEDGNPGSWGT 834
WE GN +WG+
Sbjct: 935 WEGGNNTTWGS 945
>SGD|S000004470 [details] [associations]
symbol:SPT5 "Component of the universally conserved Spt4/5
complex (DSIF complex)" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0032044 "DSIF complex"
evidence=IPI] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=IGI;IMP;IPI] [GO:0000993
"RNA polymerase II core binding" evidence=IPI] [GO:0033553 "rDNA
heterochromatin" evidence=IDA] [GO:2000232 "regulation of rRNA
processing" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP] [GO:0090262 "regulation of
transcription-coupled nucleotide-excision repair" evidence=IGI]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:2001208 "negative regulation of transcription elongation from
RNA polymerase I promoter" evidence=IGI] [GO:0001179 "RNA
polymerase I transcription factor binding" evidence=IPI]
[GO:0001042 "RNA polymerase I core binding" evidence=IPI]
[GO:0019843 "rRNA binding" evidence=IDA] [GO:2001209 "positive
regulation of transcription elongation from RNA polymerase I
promoter" evidence=IMP] [GO:0001181 "core RNA polymerase I binding
transcription factor activity" evidence=IC] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IGI;IPI]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 SGD:S000004470
Pfam:PF00467 GO:GO:0005739 EMBL:BK006946 GO:GO:0019843
GO:GO:0008298 GO:GO:0000398 GO:GO:0000991 GO:GO:0032968
GO:GO:0006370 GO:GO:2001209 GO:GO:0090262 InterPro:IPR008991
SUPFAM:SSF50104 EMBL:Z49810 InterPro:IPR005824 SMART:SM00739
GO:GO:0001181 GO:GO:2000232 GO:GO:0032044 PDB:2EXU PDBsum:2EXU
GO:GO:2001208 eggNOG:COG5164 KO:K15172 InterPro:IPR022581
InterPro:IPR005100 PANTHER:PTHR11125:SF7 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 HOGENOM:HOG000189404 OMA:GGASTWG
OrthoDB:EOG4HTD1J EMBL:M62882 PIR:A40253 RefSeq:NP_013703.1
ProteinModelPortal:P27692 SMR:P27692 DIP:DIP-6621N IntAct:P27692
MINT:MINT-631921 STRING:P27692 PaxDb:P27692 PeptideAtlas:P27692
PRIDE:P27692 EnsemblFungi:YML010W GeneID:854999 KEGG:sce:YML010W
CYGD:YML010w EvolutionaryTrace:P27692 NextBio:978151
Genevestigator:P27692 GermOnline:YML010W Uniprot:P27692
Length = 1063
Score = 623 (224.4 bits), Expect = 4.4e-59, Sum P(2) = 4.4e-59
Identities = 227/806 (28%), Positives = 366/806 (45%)
Query: 112 FIVDGGAELPDEDGGRGIHRRPLLPREDEQ-------EDVEALERRIQARYARSSHTEYD 164
FI G E DE G R L R+ +Q ED + L + ++ RY RSS +Y
Sbjct: 207 FITHGDDE-DDEASAPGARRDDRLHRQLDQDLNKTSEEDAQRLAKELRERYGRSSSKQYR 265
Query: 165 EETTD--VEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKC--IDKG---SELQIRSV 217
D V Q+ LLPSV +W V+C G+E+E L++K +D+ +L+I S+
Sbjct: 266 AAAQDGYVPQRFLLPSVDTATIWGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSI 325
Query: 218 IALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAV-ESKAIDLSRD 276
D+ IYIEA K++ +++ C G+ +IY + +L+P++E+ +L +S + L
Sbjct: 326 FQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLLLKPNKSDDVALEEG 385
Query: 277 TWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKK--KP-FV- 332
++VR+K G YKGDLA V + V +K++PR+D ++++ +K +P F
Sbjct: 386 SYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKF-DEIDPTTQQRKSRRPTFAH 444
Query: 333 -PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQP 391
PP+ N A L +RD Y +N + DG+LYK+ ++ + +NIQP
Sbjct: 445 RAPPQLFNPTMALRLDQANLYKRDDRHFTY-KNED---YIDGYLYKSFRIQHVETKNIQP 500
Query: 392 TFDELEKFRTPGENGESDIASLSTLF--ANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVD 449
T +EL +F + + G D+ S+S A K F GD + V+ G+ + KG V +
Sbjct: 501 TVEELARFGS--KEGAVDLTSVSQSIKKAQAAKVTFQPGDRIEVLNGEQRGSKGIVTRTT 558
Query: 450 EENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILS 509
++ I+ + G L L K FEPG+HV V++G G G+VL VEQ + +S
Sbjct: 559 KDIATIK--LNGFTTPLEFPISTLRKIFEPGDHVTVINGEHQGDAGLVLMVEQGQVTFMS 616
Query: 510 DTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGV 569
T ++ + A+++ +S + T T +Y L D+V L + II+ + F+V +
Sbjct: 617 TQTSREVTITANNLSKSIDTTA--TS-SEYALHDIVELSAKNVACIIQAGHDIFKV---I 670
Query: 570 PDRPEVALVKLREIKCKLEK-KSNVQ--DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYR 626
+ +V+ + I K+ ++ V D N N + + D IVE ++G V +I
Sbjct: 671 DETGKVSTITKGSILSKINTARARVSSVDANGNEIKIGDT--IVEKVGSRREGQVLYIQT 728
Query: 627 GILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRY 686
+F+ + +E+AG S+ V S+ N N S+ N P I G
Sbjct: 729 QQIFVVSKKIVENAGVFVVNPSNVEAVA-SKDNMLSNKMDLSKMN-----PEIISKMGPP 782
Query: 687 SXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVT 746
S + +G TV++R YKG G V DV G VEL S+ K +T
Sbjct: 783 SSKTFQQPIQSRGG---REVALGKTVRIRSAGYKGQLGIVKDVNGDKATVELHSKNKHIT 839
Query: 747 VDRSMIS---DNVVVSTPYRD-TPRYGMGSETPMHPSRTPLHPYM-TPMRDAGATPIHDG 801
+D+ ++ Y + R G + M PS M T AGA G
Sbjct: 840 IDKHKLTYYNREGGEGITYDELVNRRGRVPQARMGPSYVSAPRNMATGGIAAGAAATSSG 899
Query: 802 MRTPMRDRAWNPYTPMSPPRDNWEDGNPG----SWGTSPQYQPGSPPSRAYEAPTPGSGW 857
+ M W+ + P N G+ G SWG + + G + A G
Sbjct: 900 LSGGMTP-GWSSFDGGKTPAVNAHGGSGGGGVSSWGGASTW--GGQGNGGASAWGGAGGG 956
Query: 858 ASTPGGNYSDAGTPRDSSSTYVNAPS 883
AS GG + A + +S + N S
Sbjct: 957 ASAWGGQGTGATSTWGGASAWGNKSS 982
Score = 139 (54.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 81 KAKRRSGSEFFDLEAQVXXXXXXXXXXXXXXFIVDG----GAELPDEDGGRGIHRRPLLP 136
K +R+ + F D+EA+V + +G G + DE G R L
Sbjct: 171 KRRRQERNRFLDIEAEVSDDEDEDEDEEDSELVREGFITHGDDEDDEASAPGARRDDRLH 230
Query: 137 REDEQ-------EDVEALERRIQARYARSSHTEYDEETTD--VEQQALLPSVRDPKLWMV 187
R+ +Q ED + L + ++ RY RSS +Y D V Q+ LLPSV +W V
Sbjct: 231 RQLDQDLNKTSEEDAQRLAKELRERYGRSSSKQYRAAAQDGYVPQRFLLPSVDTATIWGV 290
Query: 188 KCAIGREREAAVCLMQKC--IDKGSELQIRSVIALDHLKNY 226
+C G+E+E L++K +D+ + ++++ NY
Sbjct: 291 RCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSIFQRDNY 331
Score = 53 (23.7 bits), Expect = 4.4e-59, Sum P(2) = 4.4e-59
Identities = 17/59 (28%), Positives = 24/59 (40%)
Query: 827 GNPGSWGTSPQYQPGSPPSRAYEA-----PTPGSGWASTPGGNYSDAGTPRDSSSTYVN 880
GN SWG + + G + A G AST GGN ++ T +S + N
Sbjct: 978 GNKSSWGGASTWASGGESNGAMSTWGGTGDRSAYGGASTWGGNNNNKSTRDGGASAWGN 1036
Score = 42 (19.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 991 DKIKIMGGPHRGATGKLIGVD-GTDGIVKVDVSLDVKI 1027
D + ++ G H+G G ++ V+ G + S +V I
Sbjct: 588 DHVTVINGEHQGDAGLVLMVEQGQVTFMSTQTSREVTI 625
Score = 40 (19.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 991 DKIKIMGGPHRGATG 1005
D+I+++ G RG+ G
Sbjct: 538 DRIEVLNGEQRGSKG 552
>POMBASE|SPAC23C4.19 [details] [associations]
symbol:spt5 "transcription elongation factor Spt5"
species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006397 "mRNA processing" evidence=IPI] [GO:0032044 "DSIF
complex" evidence=IDA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
PomBase:SPAC23C4.19 Pfam:PF00467 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0006351 GO:GO:0032968
GO:GO:0034243 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 KO:K15172 InterPro:IPR022581
InterPro:IPR005100 PANTHER:PTHR11125:SF7 Pfam:PF03439 Pfam:PF11942
EMBL:AB028017 PIR:T38274 RefSeq:NP_593191.1
ProteinModelPortal:O13936 STRING:O13936 EnsemblFungi:SPAC23C4.19.1
GeneID:2541916 KEGG:spo:SPAC23C4.19 HOGENOM:HOG000189404
OMA:GGASTWG OrthoDB:EOG4HTD1J NextBio:20803003 Uniprot:O13936
Length = 990
Score = 491 (177.9 bits), Expect = 3.2e-42, Sum P(2) = 3.2e-42
Identities = 225/840 (26%), Positives = 361/840 (42%)
Query: 78 RKPKAKRRSGSEFFDLEAQVXXXXXXXXXXXXXXFIVDGGAELP---DEDGGRGIHRRPL 134
R+ +A+ ++F D+EA+V DG E D G HR
Sbjct: 134 RRKRARHDRRNQFLDIEAEVDEDEEELEDEEDEIGREDGFIEEEVGADYVGDDRRHRELD 193
Query: 135 LPREDEQE-DVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGR 193
R++ Q D E L + +Y RS D T++V Q+ LLPSV DP +W V+C IG+
Sbjct: 194 RQRQELQSVDAERLAEEYREKYGRSQTVVGD--TSNVPQRLLLPSVNDPNIWAVRCKIGK 251
Query: 194 EREAAVCLMQKCIDKGSELQIRSVIALDHLKNYI-YIEADKEAHVKEACKGLRNIYSQKV 252
E++ +M+K +D +I+ + + YI EA + N V
Sbjct: 252 EKDIVFTIMRKAMDLQYTSSPLEIISAFQRDSLVGYIYV--EARKQSHVLDALN----GV 305
Query: 253 MLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNY----KGDLA-KVVDVDNVRQRVTVKL 307
+ V M V E + + V + G Y +G A + VDN+ + L
Sbjct: 306 LNVYTNNMILVPIKEMPDLLKVQKQVVELLPGAYVRIRRGKYAGDLAQVDNLSEN---GL 362
Query: 308 IPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGG 367
R+ + + +G + K P R N EA + + +R P F N
Sbjct: 363 TARVRIVPRIDYSDGLK-RKNSATRPQARLFNESEAFKSNPSKFSKRGPRLF-LFNNEE- 419
Query: 368 MLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGH--F 425
F+DGFL K + + S+ + + PT DE+ KF P N E D+ LS+L + K GH F
Sbjct: 420 --FEDGFLVKDIRISSLITEGVNPTLDEVSKFN-P--NNE-DL-DLSSLALSVKGGHAEF 472
Query: 426 MKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKV 485
GD V V G+ + G VE V +V GL L V S+ L K F G++VKV
Sbjct: 473 QPGDHVEVYVGEQTGVSGVVENV-RGSVITMVSSDGL--RLDVPSRGLRKRFRHGDYVKV 529
Query: 486 VSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLV 545
++G TGMV+++ + + LSDT ++ VF+ D+ E+S + YEL DLV
Sbjct: 530 IAGKYKDDTGMVVRISKDEVTFLSDTLMTELTVFSRDLGEASSAQA-VNSA--YELHDLV 586
Query: 546 LLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVK 604
LD N+ I V+ + ++V + V V +I + + V DRN + +
Sbjct: 587 QLDVNTVACIFSVDRDTYKV---IDQNGGVRTVLASQITMRHSNRRGVATDRNGAEIRIG 643
Query: 605 DVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVG--GSRANGDR 662
D V+ V G +GKQG + HIYR +F+H+R E+ G A+S + + G+R + D
Sbjct: 644 DKVKEVGG--EGKQGTILHIYRAFVFLHNRDIAENNGVFSARSRNVATIAAKGARISADL 701
Query: 663 NGDAYSRFNSLRTPP--RIPQSPGRYSXXXXXXXXXXXXXXXXHDALVGTT-VKVRLGPY 719
+ N PP + ++ GR + TT R+ +
Sbjct: 702 TKMNPALSNGPALPPVANLKRTIGRDKAIGATVRIRRGPMKGLLGVIKDTTDANARVELH 761
Query: 720 KGYRGRVVDVKGQSVRVELES-QMKVVT--VDRSM-ISDNVVVSTPYRDTPRYGMGSETP 775
G ++V + +++ ++ ++ T ++RS I + + + P + G+ TP
Sbjct: 762 TG--NKMVTIPKENLLYTTKTGELISYTEFIERSRGIRPGSISTADGPNVPNWAQGARTP 819
Query: 776 M--HPSRTPLHPY--MTPMRDAGA-TPI-HDGMRTPM-----RDRAWNPYTPMSPPRDNW 824
+ SRTP TP ++G+ TP + G RTP + AWN + +P W
Sbjct: 820 AVANGSRTPAWNTGSRTPAWNSGSKTPAWNSGSRTPAWNSGNKTPAWNAGS-RTPA---W 875
Query: 825 EDGNPG-SWGT---SPQYQPGSPPSRAYEAPTPGSGW---ASTPGGNYSDAGTPRDSSST 877
GN +W +P + G+ + A+ A W TP N + TP ++ T
Sbjct: 876 NSGNKTPAWNVGNKTPAWNSGAK-TPAWNAGNKTPSWNNGTKTPAWNANQ--TPMVANGT 932
Score = 37 (18.1 bits), Expect = 3.2e-42, Sum P(2) = 3.2e-42
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 122 DEDGGRGIHRRPLLPREDEQEDVEA 146
DE GG G +R R ++ D+EA
Sbjct: 128 DESGG-GRRKRARHDRRNQFLDIEA 151
>TAIR|locus:2137420 [details] [associations]
symbol:AT4G08360 "AT4G08360" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL109819
EMBL:AL161511 EMBL:AY122908 IPI:IPI00543961 PIR:T14190
RefSeq:NP_192576.1 UniGene:At.33757 ProteinModelPortal:Q9STN2
STRING:Q9STN2 PaxDb:Q9STN2 PRIDE:Q9STN2 EnsemblPlants:AT4G08360.1
GeneID:826392 KEGG:ath:AT4G08360 TAIR:At4g08360 eggNOG:KOG1998
InParanoid:Q9STN2 PhylomeDB:Q9STN2 Genevestigator:Q9STN2
Uniprot:Q9STN2
Length = 141
Score = 303 (111.7 bits), Expect = 9.0e-26, P = 9.0e-26
Identities = 64/105 (60%), Positives = 77/105 (73%)
Query: 935 FMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIK 994
FMPDILV E VGVIR+V DG C+V LGS G GDTI +E+EIV PRK+D +K
Sbjct: 40 FMPDILVTVHNSE--VGVIRDV-SDGMCKVSLGSGGEGDTIMVPSSELEIVRPRKSDHVK 96
Query: 995 IMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 1039
I+GG + G T KLIG+DG D IVK+D +LDVKILD+A+LAK QP
Sbjct: 97 ILGGSYLGLTCKLIGIDGLDAIVKIDGNLDVKILDLALLAKFVQP 141
>TAIR|locus:4515103232 [details] [associations]
symbol:WIH3 "AT3G49845" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002686 IPI:IPI01020235 RefSeq:NP_001118805.1
UniGene:At.35564 EnsemblPlants:AT3G49845.1 GeneID:6240705
KEGG:ath:AT3G49845 OMA:GYPANSA Uniprot:F4IZ80
Length = 124
Score = 99 (39.9 bits), Expect = 0.00057, P = 0.00057
Identities = 30/102 (29%), Positives = 38/102 (37%)
Query: 770 MGSETPMHPSRTPLHPYMTPMRD----AGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWE 825
M + P HP P P P ++ AG P G P +A P PP+ +
Sbjct: 1 MSYQDPQHPVSAP-PPQGYPPKEGYPPAGYPP-PAGYPPPQYPQAGYPPAGYPPPQQGYG 58
Query: 826 DGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSD 867
G P PQY G PP Y+ P P + P N D
Sbjct: 59 QGYPAQGYPPPQYPQGHPPQYPYQGPPPPH-YGQAPPKNKKD 99
>UNIPROTKB|P11414 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:10029 "Cricetulus griseus" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR000684 Pfam:PF05001
PROSITE:PS00115 GO:GO:0003677 GO:GO:0006468 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 EMBL:M19538 PIR:A27677
ProteinModelPortal:P11414 Uniprot:P11414
Length = 467
Score = 122 (48.0 bits), Expect = 0.00060, P = 0.00060
Identities = 44/145 (30%), Positives = 66/145 (45%)
Query: 759 STPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPM- 817
S+PY +P G G+ M PS +P P P G TP +P +++P +P
Sbjct: 75 SSPYIPSP--G-GA---MSPSYSPTSPAYEPRSPGGYTP-QSPSYSPTSP-SYSPTSPSY 126
Query: 818 SPPRDNWEDGNPGSWGTSPQYQPGSP---PSRAYEAPTPGSGWASTPGGNYSDAGTPRDS 874
SP N+ +P TSP Y P SP P+ +PT S ++P +YS
Sbjct: 127 SPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSP 184
Query: 875 SSTYVNAPSP-YLPSTPGGQPMTPN 898
+S + SP Y P++P P +P+
Sbjct: 185 TSPSYSPTSPSYSPTSPSYSPTSPS 209
>UNIPROTKB|I3LQ53 [details] [associations]
symbol:I3LQ53 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000684 Pfam:PF05001 PROSITE:PS00115 GO:GO:0003677
GO:GO:0006366 GO:GO:0005665 GeneTree:ENSGT00700000104490
EMBL:FP565284 Ensembl:ENSSSCT00000030016 OMA:YAESDYL Uniprot:I3LQ53
Length = 543
Score = 122 (48.0 bits), Expect = 0.00076, P = 0.00076
Identities = 44/145 (30%), Positives = 66/145 (45%)
Query: 759 STPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPM- 817
S+PY +P G G+ M PS +P P P G TP +P +++P +P
Sbjct: 151 SSPYIPSP--G-GA---MSPSYSPTSPAYEPRSPGGYTP-QSPSYSPTSP-SYSPTSPSY 202
Query: 818 SPPRDNWEDGNPGSWGTSPQYQPGSP---PSRAYEAPTPGSGWASTPGGNYSDAGTPRDS 874
SP N+ +P TSP Y P SP P+ +PT S ++P +YS
Sbjct: 203 SPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSP 260
Query: 875 SSTYVNAPSP-YLPSTPGGQPMTPN 898
+S + SP Y P++P P +P+
Sbjct: 261 TSPSYSPTSPSYSPTSPSYSPTSPS 285
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1039 934 0.00092 122 3 11 22 0.43 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 619 (66 KB)
Total size of DFA: 426 KB (2203 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 93.48u 0.09s 93.57t Elapsed: 00:00:16
Total cpu time: 93.49u 0.09s 93.58t Elapsed: 00:00:16
Start: Tue May 21 12:01:25 2013 End: Tue May 21 12:01:41 2013