BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001640
(1039 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 985 RSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
R+C +C + +V + CGH+ C +CA L+ KCPICR I VR F+
Sbjct: 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFL 344
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
++R+C +C + +V + CGH+ C CA L+ KCPICR+ I VR F+
Sbjct: 23 EERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIKGTVRTFL 73
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
++R+C +C + V + CGH+ C +CA LQ CPICRAP+ VR F+
Sbjct: 12 EERTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQL----CPICRAPVRSRVRTFL 61
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 985 RSCCICYEMQVDSLLY--RCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
+ C +C + D + R GH+ TC CA L+ + CPIC+ I V++ F+
Sbjct: 8 KPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
Length = 79
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
C +C E +++S CGH C CA +LQ CP+CR+ ++ V ++
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYL 67
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 1001 RCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAF 1036
+ GH+ C CA +L+ + CP+CR PI +V +
Sbjct: 27 KTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 1001 RCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAF 1036
+ GH+ C CA +L+ + CP+CR PI +V +
Sbjct: 26 KTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap
Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
+++ C IC + + + CGH+ TC +CA + KCP+C I + FM
Sbjct: 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIFM 74
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
+++ C IC + + + CGH+ TC +CA + KCP+C I + FM
Sbjct: 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIFM 73
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 36.6 bits (83), Expect = 0.078, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPIC 1025
+++ C IC + + + CGH+ TC +CA + KCP+C
Sbjct: 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMC 61
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 985 RSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICR 1026
+ C +C V+ +L C H C C C Q +CP+CR
Sbjct: 16 KDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCR 53
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGK-CPICRAPI 1029
C IC E D + CGH+ C C Q S G+ CP CR I
Sbjct: 29 CKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGK-CPICRAPI 1029
C IC E D + CGH+ C C Q S G+ CP CR I
Sbjct: 27 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 32.7 bits (73), Expect = 1.00, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGK-CPICRAPI 1029
C IC E D + CGH+ C C Q S G+ CP CR I
Sbjct: 30 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
Length = 149
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 938 LHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGA----PKKRSCCICYEM 993
L E++ +K ++ + + K + ++E +Q L + C IC E
Sbjct: 14 LMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEY 73
Query: 994 QVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPI 1029
++++ C H C C +E +CPICR I
Sbjct: 74 FIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDI 108
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 933 GQIEQLHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGA----PKKRSCC 988
G +E+L+R +K ++ + + K + ++E +Q L + C
Sbjct: 2 GSMEELNRS----KKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCI 57
Query: 989 ICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPI 1029
IC E ++++ C H C C +E +CPICR I
Sbjct: 58 ICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 933 GQIEQLHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGA----PKKRSCC 988
G +E+L+R +K ++ + + K + ++E +Q L + C
Sbjct: 2 GSMEELNRS----KKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCI 57
Query: 989 ICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPI 1029
IC E ++++ C H C C +E +CPICR I
Sbjct: 58 ICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDI 97
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 978 LYGAPKKRSCCICYEMQVDSLLYRCGH-MC-TCLKCAHE---LQWSSGKCPICR 1026
L ++ +C IC E+ L CGH C CL H+ L CP+CR
Sbjct: 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGK-CPICRAPI 1029
C IC E D + CGH+ C C Q S G+ CP CR I
Sbjct: 337 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGK-CPICRAPI 1029
C IC E D + CGH+ C C Q S G+ CP CR I
Sbjct: 337 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGK-CPICRAPI 1029
C IC E D + CGH+ C C Q S G+ CP CR I
Sbjct: 335 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGK-CPICRAPI 1029
C IC E D + CGH+ C C Q S G+ CP CR I
Sbjct: 341 CKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGK-CPICRAPI 1029
C IC E D + CGH+ C C Q S G+ CP CR I
Sbjct: 335 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 986 SCCICYEMQVDSLLYRCGH-MC-TCLKCAHELQWSS---GKCPICRAP 1028
+C IC E+ + + C H C C+ +E ++ G CP+CR P
Sbjct: 21 TCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.123 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,486,875
Number of Sequences: 62578
Number of extensions: 826497
Number of successful extensions: 1648
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1544
Number of HSP's gapped (non-prelim): 80
length of query: 1039
length of database: 14,973,337
effective HSP length: 109
effective length of query: 930
effective length of database: 8,152,335
effective search space: 7581671550
effective search space used: 7581671550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)