BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001640
(1039 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29503|NEUR_DROME Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2
Length = 754
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQW---SSGKCPICRAPIDDVVRAF 1036
C ICYE +DS+LY CGHMC C CA E QW G+CP+CRA I DV+R +
Sbjct: 701 CTICYENPIDSVLYMCGHMCMCYDCAIE-QWRGVGGGQCPLCRAVIRDVIRTY 752
>sp|Q24746|NEUR_DROVI Protein neuralized OS=Drosophila virilis GN=neur PE=4 SV=1
Length = 747
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQW---SSGKCPICRAPIDDVVRAF 1036
C ICYE +DS+LY CGHMC C CA E QW G+CP+CRA I DV+R +
Sbjct: 694 CTICYENPIDSVLYMCGHMCMCYDCAIE-QWRGVGGGQCPLCRAVIRDVIRTY 745
>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1
Length = 574
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWS-SGKCPICRAPIDDVVRAFMDS 1039
C ICYE VD+++Y CGHMC C C L+ + CPICR PI D+++ + S
Sbjct: 521 CTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTYRSS 574
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1
Length = 574
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWS-SGKCPICRAPIDDVVRAFMDS 1039
C ICYE VD+++Y CGHMC C C L+ + CPICR PI D+++ + S
Sbjct: 521 CTICYEHAVDTVIYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTYRSS 574
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQ-WSSGKCPICRAPIDDVVRAF 1036
K C +C++ +VD+++Y CGHMC C C L+ + CPICR PI DV++ +
Sbjct: 499 KNGECTVCFDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIY 553
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHEL-QWSSGKCPICRAPIDDVVRAF 1036
C +C++ +VD+++Y CGHMC C C L + + CPICR PI DV++ +
Sbjct: 494 CTVCFDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKIY 544
>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana
GN=LUL3 PE=1 SV=1
Length = 378
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 985 RSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMDS 1039
+ C IC D+ + C H+C C CA EL++ + KCPICR PI ++V+ ++S
Sbjct: 319 KECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVKIKVES 373
>sp|Q9LYW5|LUL1_ARATH Probable E3 ubiquitin-protein ligase LUL1 OS=Arabidopsis thaliana
GN=LUL1 PE=1 SV=1
Length = 337
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 880 SYQDHEVGDESDPVASTSSPQPLPAQAYYQDSRQSSSSTNHISIETELIYDLRGQIEQLH 939
+++D E+ E D + PL +A + + S + ++ I T+++Y
Sbjct: 198 AFKDSELFKEVD-----TDVFPLAVKAEATPAEEGKSGSTNVQI-TQVVYT--------- 242
Query: 940 REMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQVDSLL 999
+E E++ V Q+ + E+ + G+ N++ G+ + + C +C D+ +
Sbjct: 243 KEKGEIKIEVVK----QILWVNKRRYELLEIYGI-ENTVDGSDEGKECVVCLSEPRDTTV 297
Query: 1000 YRCGHMCTCLKCAHELQWSSGKCPICRAPID 1030
C HMC C CA L++ + CP+CR P++
Sbjct: 298 LPCRHMCMCSGCAKALRFQTNLCPVCRQPVE 328
>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor OS=Drosophila melanogaster GN=th PE=1 SV=2
Length = 438
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 982 PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
P+++ C ICY + ++ CGH+ C KCA S KCP+CR P DV+R +
Sbjct: 386 PEEKLCKICYGAEYNTAFLPCGHVVACAKCAS----SVTKCPLCRKPFTDVMRVYF 437
>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp.
japonica GN=XBOS34 PE=2 SV=1
Length = 513
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 963 NQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKC 1022
N+ + P + N S G +C IC + V+ CGHM C+ C +++ C
Sbjct: 438 NEGDAKPAESDANASNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGC 497
Query: 1023 PICRAPIDDVVRAF 1036
PICRA I+ ++R +
Sbjct: 498 PICRAKINQIIRLY 511
>sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana
GN=LUL4 PE=2 SV=1
Length = 359
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMDS 1039
C IC D+ + C H+C C CA EL+ S KCPICR PI++++ M+S
Sbjct: 302 CVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIKMNS 354
>sp|Q8JHV9|BIR7A_XENLA Baculoviral IAP repeat-containing protein 7-A OS=Xenopus laevis
GN=birc7-a PE=1 SV=1
Length = 401
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
++R C +C + V L CGH+ C +CA L+ CPICRA I VRAFM
Sbjct: 350 EERMCKVCMDKDVSMLFVPCGHLVVCTECAPNLR----HCPICRAAIRGSVRAFM 400
>sp|Q9LFH6|LUL2_ARATH Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana
GN=LUL2 PE=2 SV=1
Length = 299
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 953 VDMQVKLHQSNQQEVHPVQGMGN----NSLYGAPKKRSCCICYEMQVDSLLYRCGHMCTC 1008
V Q+ N+ + + G+GN N + + C IC D+ + C HMC C
Sbjct: 205 VVKQILWVNGNRYVLQEIYGIGNTVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMC 264
Query: 1009 LKCAHELQWSSGKCPICRAPID 1030
CA L++ + CPICR P+D
Sbjct: 265 SGCAKLLRFQTNLCPICRQPVD 286
>sp|Q6ZQM0|RFFL_MOUSE E3 ubiquitin-protein ligase rififylin OS=Mus musculus GN=Rffl PE=1
SV=1
Length = 377
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAF 1036
C IC + +D +L CGHM TC KC + +CPICR + V F
Sbjct: 330 CKICMDSPIDCVLLECGHMVTCTKCGKRM----NECPICRQYVIRAVHVF 375
>sp|Q8WZ73|RFFL_HUMAN E3 ubiquitin-protein ligase rififylin OS=Homo sapiens GN=RFFL PE=1
SV=1
Length = 363
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAF 1036
C IC + +D +L CGHM TC KC + +CPICR + V F
Sbjct: 316 CKICMDSPIDCVLLECGHMVTCTKCGKRM----NECPICRQYVIRAVHVF 361
>sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus norvegicus GN=Rffl
PE=1 SV=1
Length = 362
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAF 1036
C IC + +D +L CGHM TC KC + +CPICR + V F
Sbjct: 315 CKICMDSPIDCVLLECGHMVTCTKCGKRMN----ECPICRQYVIRAVHVF 360
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.121 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,872,941
Number of Sequences: 539616
Number of extensions: 15831863
Number of successful extensions: 181839
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 2832
Number of HSP's that attempted gapping in prelim test: 109420
Number of HSP's gapped (non-prelim): 36640
length of query: 1039
length of database: 191,569,459
effective HSP length: 128
effective length of query: 911
effective length of database: 122,498,611
effective search space: 111596234621
effective search space used: 111596234621
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)