Query 001640
Match_columns 1039
No_of_seqs 188 out of 1220
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4172 Predicted E3 ubiquitin 99.4 5.9E-14 1.3E-18 119.6 -1.4 54 984-1037 7-61 (62)
2 KOG4275 Predicted E3 ubiquitin 99.2 4.8E-12 1E-16 136.0 0.7 97 934-1037 253-349 (350)
3 KOG4265 Predicted E3 ubiquitin 99.2 1.5E-11 3.3E-16 134.9 3.5 58 981-1038 287-344 (349)
4 PF13920 zf-C3HC4_3: Zinc fing 99.1 2.6E-11 5.6E-16 98.8 3.3 49 984-1032 2-50 (50)
5 KOG1571 Predicted E3 ubiquitin 98.8 1.7E-09 3.6E-14 119.3 1.8 56 979-1038 300-355 (355)
6 KOG0317 Predicted E3 ubiquitin 98.5 6.9E-08 1.5E-12 104.5 2.6 53 980-1033 235-287 (293)
7 KOG0320 Predicted E3 ubiquitin 98.4 1.1E-07 2.4E-12 97.3 2.7 55 982-1037 129-187 (187)
8 KOG1100 Predicted E3 ubiquitin 98.4 7.9E-08 1.7E-12 100.1 1.2 48 986-1037 160-207 (207)
9 KOG0823 Predicted E3 ubiquitin 98.4 1.6E-07 3.4E-12 99.2 3.2 56 981-1037 44-104 (230)
10 PHA02929 N1R/p28-like protein; 98.4 2.4E-07 5.1E-12 98.6 4.1 53 982-1035 172-232 (238)
11 PLN03208 E3 ubiquitin-protein 98.3 4.3E-07 9.3E-12 94.1 4.4 55 982-1037 16-88 (193)
12 KOG0978 E3 ubiquitin ligase in 98.3 1.9E-07 4.1E-12 110.7 2.0 55 982-1037 641-698 (698)
13 PF13923 zf-C3HC4_2: Zinc fing 98.3 3.6E-07 7.8E-12 71.5 2.5 38 987-1025 1-39 (39)
14 PF13639 zf-RING_2: Ring finge 98.3 4.4E-07 9.6E-12 72.3 2.1 40 986-1026 2-44 (44)
15 KOG1785 Tyrosine kinase negati 98.1 6.4E-07 1.4E-11 100.3 1.2 54 983-1037 368-423 (563)
16 cd00162 RING RING-finger (Real 98.0 3.2E-06 6.9E-11 64.2 3.0 43 986-1029 1-45 (45)
17 PHA02926 zinc finger-like prot 98.0 2.4E-06 5.2E-11 90.4 2.3 53 981-1034 167-234 (242)
18 smart00504 Ubox Modified RING 98.0 3.8E-06 8.2E-11 70.2 2.9 45 985-1030 2-46 (63)
19 smart00184 RING Ring finger. E 97.9 5.7E-06 1.2E-10 60.7 2.7 38 987-1025 1-39 (39)
20 TIGR00599 rad18 DNA repair pro 97.9 4.5E-06 9.8E-11 94.4 3.0 52 979-1031 21-72 (397)
21 KOG2164 Predicted E3 ubiquitin 97.9 3.9E-06 8.5E-11 96.6 2.4 53 984-1037 186-245 (513)
22 COG5243 HRD1 HRD ubiquitin lig 97.9 2.1E-05 4.6E-10 88.0 7.5 91 925-1029 241-344 (491)
23 PF00097 zf-C3HC4: Zinc finger 97.9 6.7E-06 1.5E-10 64.1 2.5 38 987-1025 1-41 (41)
24 PF14634 zf-RING_5: zinc-RING 97.8 1E-05 2.2E-10 65.1 2.8 41 986-1027 1-44 (44)
25 PF15227 zf-C3HC4_4: zinc fing 97.8 1.3E-05 2.9E-10 64.6 2.9 38 987-1025 1-42 (42)
26 COG5574 PEX10 RING-finger-cont 97.8 1E-05 2.2E-10 87.2 1.9 48 982-1030 213-262 (271)
27 KOG2177 Predicted E3 ubiquitin 97.5 3.8E-05 8.3E-10 75.5 1.3 46 981-1027 10-55 (386)
28 COG5432 RAD18 RING-finger-cont 97.4 7E-05 1.5E-09 82.0 2.2 52 978-1030 19-70 (391)
29 PF13445 zf-RING_UBOX: RING-ty 97.4 7.6E-05 1.7E-09 61.1 1.8 31 987-1019 1-35 (43)
30 PF04564 U-box: U-box domain; 97.4 0.00014 3.1E-09 64.2 3.4 49 982-1031 2-51 (73)
31 KOG0287 Postreplication repair 97.3 7.6E-05 1.6E-09 83.0 1.3 50 981-1031 20-69 (442)
32 PF12678 zf-rbx1: RING-H2 zinc 97.3 0.00018 3.9E-09 63.9 3.4 41 985-1026 20-73 (73)
33 KOG4692 Predicted E3 ubiquitin 97.3 9E-05 2E-09 82.7 1.7 51 982-1033 420-470 (489)
34 KOG0824 Predicted E3 ubiquitin 97.3 8.7E-05 1.9E-09 81.5 1.1 51 982-1033 5-56 (324)
35 KOG0802 E3 ubiquitin ligase [P 97.2 0.00011 2.3E-09 85.8 1.2 49 981-1030 288-341 (543)
36 COG5236 Uncharacterized conser 97.1 0.00038 8.1E-09 77.8 3.4 53 979-1032 56-110 (493)
37 COG5540 RING-finger-containing 97.0 0.00037 8E-09 76.9 2.8 48 982-1030 321-372 (374)
38 KOG1039 Predicted E3 ubiquitin 96.9 0.00035 7.7E-09 78.2 1.6 52 982-1034 159-225 (344)
39 KOG0311 Predicted E3 ubiquitin 96.6 0.00034 7.4E-09 78.3 -1.7 50 982-1032 41-92 (381)
40 KOG4628 Predicted E3 ubiquitin 96.6 0.0012 2.6E-08 74.2 2.4 47 985-1032 230-280 (348)
41 KOG2879 Predicted E3 ubiquitin 96.3 0.0051 1.1E-07 67.5 5.0 56 975-1031 230-288 (298)
42 KOG4159 Predicted E3 ubiquitin 96.2 0.0024 5.2E-08 73.0 2.4 50 981-1031 81-130 (398)
43 PF14447 Prok-RING_4: Prokaryo 96.2 0.0019 4.1E-08 56.1 1.1 46 983-1031 6-51 (55)
44 TIGR00570 cdk7 CDK-activating 95.9 0.0061 1.3E-07 67.8 3.5 30 1001-1031 25-55 (309)
45 PF14835 zf-RING_6: zf-RING of 95.6 0.0038 8.2E-08 55.8 0.4 44 983-1029 6-50 (65)
46 COG5152 Uncharacterized conser 95.4 0.0057 1.2E-07 64.7 0.9 48 984-1032 196-243 (259)
47 KOG2113 Predicted RNA binding 95.2 0.025 5.5E-07 63.2 5.0 55 979-1035 338-392 (394)
48 KOG1813 Predicted E3 ubiquitin 95.2 0.0068 1.5E-07 67.0 0.7 48 985-1033 242-289 (313)
49 KOG0825 PHD Zn-finger protein 95.1 0.0051 1.1E-07 74.4 -0.5 51 982-1033 121-174 (1134)
50 KOG3002 Zn finger protein [Gen 95.1 0.01 2.2E-07 65.8 1.7 47 981-1032 45-93 (299)
51 KOG3039 Uncharacterized conser 95.0 0.017 3.6E-07 63.0 3.1 50 982-1032 219-272 (303)
52 KOG0828 Predicted E3 ubiquitin 94.9 0.0095 2.1E-07 69.4 1.0 50 981-1031 568-635 (636)
53 KOG1001 Helicase-like transcri 94.2 0.019 4E-07 69.7 1.2 45 985-1031 455-501 (674)
54 PF07800 DUF1644: Protein of u 93.9 0.048 1E-06 56.2 3.4 53 984-1036 2-97 (162)
55 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.051 1.1E-06 58.6 3.5 49 981-1031 110-162 (260)
56 KOG0297 TNF receptor-associate 93.6 0.029 6.4E-07 63.9 1.3 52 981-1033 18-70 (391)
57 KOG2932 E3 ubiquitin ligase in 93.3 0.028 6E-07 62.8 0.5 45 987-1034 92-138 (389)
58 KOG0826 Predicted E3 ubiquitin 93.0 0.039 8.5E-07 62.0 1.1 59 979-1038 295-356 (357)
59 PF14570 zf-RING_4: RING/Ubox 92.7 0.053 1.1E-06 46.2 1.3 41 987-1028 1-46 (48)
60 PF12861 zf-Apc11: Anaphase-pr 92.5 0.1 2.2E-06 49.0 3.0 33 997-1030 47-82 (85)
61 KOG0804 Cytoplasmic Zn-finger 92.4 0.094 2E-06 61.0 3.1 48 978-1028 169-220 (493)
62 KOG1814 Predicted E3 ubiquitin 92.3 0.11 2.4E-06 59.9 3.5 45 982-1027 182-237 (445)
63 KOG2660 Locus-specific chromos 92.0 0.038 8.2E-07 62.0 -0.5 52 981-1033 12-64 (331)
64 PF10367 Vps39_2: Vacuolar sor 90.0 0.65 1.4E-05 42.3 5.5 32 981-1013 75-108 (109)
65 KOG1002 Nucleotide excision re 88.4 0.18 3.8E-06 59.8 0.8 51 978-1029 530-585 (791)
66 KOG3799 Rab3 effector RIM1 and 87.5 1.2 2.6E-05 45.5 5.8 46 981-1029 62-117 (169)
67 COG5220 TFB3 Cdk activating ki 86.4 0.26 5.7E-06 53.9 0.7 44 983-1027 9-61 (314)
68 COG5219 Uncharacterized conser 86.1 0.3 6.4E-06 61.1 1.0 50 981-1031 1466-1524(1525)
69 PF04710 Pellino: Pellino; In 84.5 0.3 6.5E-06 56.4 0.0 52 984-1036 328-410 (416)
70 COG5175 MOT2 Transcriptional r 84.5 0.46 9.9E-06 54.1 1.4 47 984-1031 14-65 (480)
71 COG5222 Uncharacterized conser 84.1 0.45 9.7E-06 53.4 1.1 42 985-1027 275-318 (427)
72 KOG2034 Vacuolar sorting prote 83.5 2.3 4.9E-05 53.4 6.7 75 926-1016 774-850 (911)
73 PF11789 zf-Nse: Zinc-finger o 83.3 0.83 1.8E-05 39.7 2.2 43 981-1024 8-53 (57)
74 KOG2113 Predicted RNA binding 82.4 0.37 8E-06 54.4 -0.3 50 982-1031 134-184 (394)
75 KOG2817 Predicted E3 ubiquitin 81.6 0.95 2.1E-05 52.3 2.5 54 982-1036 332-393 (394)
76 KOG1734 Predicted RING-contain 81.6 0.72 1.6E-05 51.3 1.5 52 979-1031 219-282 (328)
77 KOG3579 Predicted E3 ubiquitin 80.6 0.67 1.4E-05 51.8 0.8 43 984-1027 268-325 (352)
78 PF03854 zf-P11: P-11 zinc fin 79.6 1.1 2.5E-05 38.6 1.7 45 986-1033 4-49 (50)
79 smart00744 RINGv The RING-vari 79.2 1.5 3.2E-05 37.0 2.2 40 986-1026 1-49 (49)
80 PHA03096 p28-like protein; Pro 78.9 2.4 5.3E-05 47.3 4.5 27 739-765 97-123 (284)
81 PF10272 Tmpp129: Putative tra 78.9 1.9 4E-05 49.6 3.6 50 980-1029 267-350 (358)
82 KOG2114 Vacuolar assembly/sort 78.0 2.1 4.5E-05 53.5 3.9 48 983-1034 839-887 (933)
83 KOG3842 Adaptor protein Pellin 75.9 1.9 4.1E-05 49.0 2.6 50 981-1031 338-415 (429)
84 PF05290 Baculo_IE-1: Baculovi 75.3 9.4 0.0002 39.1 7.0 49 983-1032 79-134 (140)
85 KOG4185 Predicted E3 ubiquitin 74.2 1.8 4E-05 46.8 1.9 31 998-1029 23-54 (296)
86 KOG2068 MOT2 transcription fac 73.4 2.1 4.5E-05 48.7 2.2 50 984-1034 249-302 (327)
87 COG5194 APC11 Component of SCF 72.0 3.2 6.9E-05 39.3 2.6 44 985-1029 32-80 (88)
88 KOG1428 Inhibitor of type V ad 71.7 1.9 4.1E-05 56.2 1.5 52 980-1032 3482-3546(3738)
89 PF05883 Baculo_RING: Baculovi 70.7 2.1 4.5E-05 43.5 1.2 41 983-1024 25-74 (134)
90 KOG4445 Uncharacterized conser 70.1 3.7 8E-05 46.6 3.1 49 982-1031 113-187 (368)
91 PF04216 FdhE: Protein involve 69.2 1.8 3.8E-05 47.4 0.5 55 982-1036 170-228 (290)
92 KOG4362 Transcriptional regula 68.3 2.2 4.7E-05 52.5 1.0 46 984-1030 21-69 (684)
93 PF11793 FANCL_C: FANCL C-term 66.0 1.9 4.2E-05 38.6 -0.1 46 984-1030 2-66 (70)
94 KOG3161 Predicted E3 ubiquitin 63.1 2.9 6.2E-05 51.1 0.6 37 984-1023 11-51 (861)
95 TIGR01562 FdhE formate dehydro 62.2 2 4.4E-05 48.3 -0.8 47 982-1028 182-233 (305)
96 KOG1940 Zn-finger protein [Gen 59.2 3.3 7.2E-05 46.2 0.2 50 985-1036 159-212 (276)
97 KOG0298 DEAD box-containing he 55.8 3.4 7.3E-05 53.7 -0.4 45 983-1028 1152-1197(1394)
98 KOG2930 SCF ubiquitin ligase, 55.1 7.3 0.00016 38.5 1.7 31 997-1028 76-106 (114)
99 PRK03564 formate dehydrogenase 55.0 4.8 0.0001 45.5 0.6 46 982-1027 185-234 (309)
100 KOG0827 Predicted E3 ubiquitin 48.0 9.3 0.0002 44.7 1.5 42 985-1027 8-53 (465)
101 PLN02189 cellulose synthase 47.7 15 0.00032 47.5 3.2 49 981-1030 31-87 (1040)
102 KOG0825 PHD Zn-finger protein 45.6 9.1 0.0002 48.0 1.0 51 982-1033 97-157 (1134)
103 KOG4185 Predicted E3 ubiquitin 44.5 6.6 0.00014 42.7 -0.4 45 983-1028 206-265 (296)
104 PF02318 FYVE_2: FYVE-type zin 43.9 34 0.00074 33.3 4.4 44 983-1027 53-102 (118)
105 PHA02862 5L protein; Provision 43.0 17 0.00038 37.8 2.3 45 984-1029 2-52 (156)
106 PF12906 RINGv: RING-variant d 42.6 16 0.00036 30.6 1.8 35 987-1025 1-47 (47)
107 KOG1941 Acetylcholine receptor 42.2 9.4 0.0002 44.8 0.4 48 982-1030 363-416 (518)
108 PHA02825 LAP/PHD finger-like p 40.0 20 0.00044 37.6 2.4 48 981-1029 5-58 (162)
109 COG5183 SSM4 Protein involved 33.3 32 0.00068 43.7 2.8 55 982-1037 10-72 (1175)
110 KOG2066 Vacuolar assembly/sort 33.1 37 0.00079 43.0 3.3 93 930-1028 734-833 (846)
111 PF13240 zinc_ribbon_2: zinc-r 32.7 11 0.00023 27.9 -0.7 23 1007-1029 1-23 (23)
112 KOG1815 Predicted E3 ubiquitin 32.3 19 0.00041 42.1 0.8 35 981-1016 67-102 (444)
113 COG5109 Uncharacterized conser 32.3 27 0.00059 40.2 2.0 53 983-1036 335-395 (396)
114 KOG1812 Predicted E3 ubiquitin 32.2 43 0.00093 39.0 3.6 34 982-1016 144-181 (384)
115 PF04710 Pellino: Pellino; In 31.0 16 0.00035 42.9 0.0 28 996-1027 303-336 (416)
116 KOG1493 Anaphase-promoting com 28.4 12 0.00026 35.4 -1.2 31 998-1029 47-80 (84)
117 KOG0956 PHD finger protein AF1 27.7 33 0.00072 42.9 1.8 43 984-1026 5-69 (900)
118 KOG1645 RING-finger-containing 26.9 52 0.0011 39.1 3.1 31 997-1028 22-54 (463)
119 KOG3842 Adaptor protein Pellin 25.7 32 0.0007 39.7 1.1 41 996-1037 316-358 (429)
120 COG4306 Uncharacterized protei 24.9 30 0.00066 35.4 0.7 43 987-1032 7-52 (160)
121 PF10083 DUF2321: Uncharacteri 23.5 36 0.00079 35.7 0.9 42 988-1032 8-52 (158)
122 PF02891 zf-MIZ: MIZ/SP-RING z 23.3 55 0.0012 27.9 1.8 43 985-1028 3-50 (50)
123 KOG3899 Uncharacterized conser 23.1 39 0.00084 38.7 1.1 27 1002-1029 325-364 (381)
124 KOG0309 Conserved WD40 repeat- 22.3 45 0.00098 42.2 1.5 38 986-1024 1030-1069(1081)
125 PF10235 Cript: Microtubule-as 21.9 43 0.00093 32.3 1.0 39 984-1032 44-82 (90)
126 KOG3113 Uncharacterized conser 21.1 99 0.0021 35.0 3.6 50 979-1031 106-159 (293)
127 KOG2391 Vacuolar sorting prote 21.0 9.2E+02 0.02 28.7 11.2 22 926-947 218-239 (365)
128 KOG1812 Predicted E3 ubiquitin 20.5 54 0.0012 38.2 1.6 41 984-1025 306-351 (384)
129 KOG2807 RNA polymerase II tran 20.1 67 0.0015 37.4 2.2 43 984-1027 330-375 (378)
130 PRK14714 DNA polymerase II lar 20.0 43 0.00094 44.4 0.8 50 984-1033 667-723 (1337)
No 1
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.9e-14 Score=119.58 Aligned_cols=54 Identities=54% Similarity=1.209 Sum_probs=50.6
Q ss_pred cccccccccccccEEEecCCCcccCHHhHHHhhc-cCCCcccccccccceeeccc
Q 001640 984 KRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQW-SSGKCPICRAPIDDVVRAFM 1037 (1039)
Q Consensus 984 k~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsk-sskkCPICRApI~~VIRIYl 1037 (1039)
...|.||++.+++.||+-|||||+|+.|...+.+ ..+.|||||+||.++|+.|.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 3789999999999999999999999999999887 57799999999999999986
No 2
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.8e-12 Score=135.98 Aligned_cols=97 Identities=29% Similarity=0.568 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCCcccccccccccccccEEEecCCCcccCHHhHH
Q 001640 934 QIEQLHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAH 1013 (1039)
Q Consensus 934 QIeQLQqEMSELRKsLQSCmEmQ~eLQrSlrQEVs~Lqg~~~~S~d~~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~ 1013 (1039)
.+.+|+..+..-.-.+++|-+.+..+.+..+ +.....+... ........+|.|||+.|++.+||+|||++.|+.|..
T Consensus 253 ~v~qLke~l~~d~vsy~gCcek~el~d~vtr-l~k~~~g~~~--~~s~~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk 329 (350)
T KOG4275|consen 253 TVRQLKEILDDDFVSYKGCCEKYELDDRVTR-LYKGNDGEQH--SRSLATRRLCAICMDAPRDCVFLECGHMVTCTKCGK 329 (350)
T ss_pred hHHHhhhhhhccCCcccchhHHHHHHHHHHH-HHhccccccc--ccchhHHHHHHHHhcCCcceEEeecCcEEeehhhcc
Confidence 4677777777777788999999988777532 2221122111 111233789999999999999999999999999999
Q ss_pred HhhccCCCcccccccccceeeccc
Q 001640 1014 ELQWSSGKCPICRAPIDDVVRAFM 1037 (1039)
Q Consensus 1014 kLsksskkCPICRApI~~VIRIYl 1037 (1039)
.|. .|||||+.|..+++||.
T Consensus 330 rm~----eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 330 RMN----ECPICRQYIVRVVRIFR 349 (350)
T ss_pred ccc----cCchHHHHHHHHHhhhc
Confidence 998 99999999999999996
No 3
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.5e-11 Score=134.90 Aligned_cols=58 Identities=31% Similarity=0.965 Sum_probs=53.7
Q ss_pred CcccccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccceeecccc
Q 001640 981 APKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMD 1038 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VIRIYld 1038 (1039)
......|+||+..+++++++||.|+|+|..|+..+....+.|||||.+|.....||+.
T Consensus 287 ~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~~ 344 (349)
T KOG4265|consen 287 SESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYVN 344 (349)
T ss_pred ccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheeccc
Confidence 3557999999999999999999999999999999998888999999999999998874
No 4
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.14 E-value=2.6e-11 Score=98.82 Aligned_cols=49 Identities=47% Similarity=1.066 Sum_probs=44.0
Q ss_pred cccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccce
Q 001640 984 KRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDV 1032 (1039)
Q Consensus 984 k~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~V 1032 (1039)
...|.||++...+++++||||+++|..|+..+....++||+||++|..|
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4689999999999999999999999999999988889999999999865
No 5
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.7e-09 Score=119.35 Aligned_cols=56 Identities=29% Similarity=0.825 Sum_probs=51.7
Q ss_pred CCCcccccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccceeecccc
Q 001640 979 YGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMD 1038 (1039)
Q Consensus 979 d~~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VIRIYld 1038 (1039)
...+....|+||.+.+.+++++||||+|+|..|+..+. +||+||..|..++++|.+
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~----~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP----QCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEEchHHHhhCC----CCchhHHHHHHHHHHhcC
Confidence 45667889999999999999999999999999999998 799999999999999964
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6.9e-08 Score=104.47 Aligned_cols=53 Identities=26% Similarity=0.651 Sum_probs=46.6
Q ss_pred CCcccccccccccccccEEEecCCCcccCHHhHHHhhccCCCccccccccccee
Q 001640 980 GAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVV 1033 (1039)
Q Consensus 980 ~~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VI 1033 (1039)
.......|.+|+++..+....||||+ ||..|+..|......||+||.++.--.
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcc
Confidence 34456999999999999999999999 999999999988889999999876543
No 7
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.1e-07 Score=97.33 Aligned_cols=55 Identities=27% Similarity=0.722 Sum_probs=45.2
Q ss_pred ccccccccccccccc--EEEecCCCcccCHHhHHHhhccCCCcccccccccc--eeeccc
Q 001640 982 PKKRSCCICYEMQVD--SLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDD--VVRAFM 1037 (1039)
Q Consensus 982 eek~eC~ICLEnprD--vVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~--VIRIYl 1037 (1039)
.....|+|||+.-.. .+-..|||+ ||..|+....+...+||+|+++|.. +.+||+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 345899999996444 344799999 9999999999999999999988754 567774
No 8
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=7.9e-08 Score=100.11 Aligned_cols=48 Identities=40% Similarity=0.862 Sum_probs=44.4
Q ss_pred cccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccceeeccc
Q 001640 986 SCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037 (1039)
Q Consensus 986 eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VIRIYl 1037 (1039)
.|.+|.+....++++||.|+|+|..|...+. .||+|+.++...+.+|+
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~----~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLR----ICPICRSPKTSSVEVNF 207 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCc----cCCCCcChhhceeeccC
Confidence 3999999999999999999999999998755 79999999999999885
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.6e-07 Score=99.22 Aligned_cols=56 Identities=30% Similarity=0.713 Sum_probs=48.0
Q ss_pred CcccccccccccccccEEEecCCCcccCHHhHHHhhc---cCCCcccccccc--cceeeccc
Q 001640 981 APKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQW---SSGKCPICRAPI--DDVVRAFM 1037 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsk---sskkCPICRApI--~~VIRIYl 1037 (1039)
....-.|-||++..++.|+..|||+ ||+.|.-+|.. ..+.||+|++.| ..+|.+|-
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 4556899999999999999999999 99999999984 356789999876 55788884
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.38 E-value=2.4e-07 Score=98.58 Aligned_cols=53 Identities=32% Similarity=0.868 Sum_probs=44.6
Q ss_pred ccccccccccccccc--------EEEecCCCcccCHHhHHHhhccCCCcccccccccceeec
Q 001640 982 PKKRSCCICYEMQVD--------SLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRA 1035 (1039)
Q Consensus 982 eek~eC~ICLEnprD--------vVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VIRI 1035 (1039)
.....|+||++...+ .++.+|||. ||..|...|.....+||+||.++..+++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 345799999996332 466789999 99999999998889999999999988764
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.32 E-value=4.3e-07 Score=94.14 Aligned_cols=55 Identities=27% Similarity=0.786 Sum_probs=45.4
Q ss_pred cccccccccccccccEEEecCCCcccCHHhHHHhhc----------------cCCCcccccccccc--eeeccc
Q 001640 982 PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQW----------------SSGKCPICRAPIDD--VVRAFM 1037 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsk----------------sskkCPICRApI~~--VIRIYl 1037 (1039)
.....|+||++...+.++++|||. ||..|+.+|.. ....||+||.+|.. .+.+|.
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 346889999999999999999999 99999998853 23589999999855 566663
No 12
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.9e-07 Score=110.65 Aligned_cols=55 Identities=29% Similarity=0.689 Sum_probs=47.1
Q ss_pred cccccccccccccccEEEecCCCcccCHHhHHHhhc-cCCCcccccccc--cceeeccc
Q 001640 982 PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQW-SSGKCPICRAPI--DDVVRAFM 1037 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsk-sskkCPICRApI--~~VIRIYl 1037 (1039)
.....|++|.++++++|+..|||+ ||..|...... +..+||.|.+++ .++.+||+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence 346799999999999999999999 99999988774 567999999987 45777774
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.30 E-value=3.6e-07 Score=71.46 Aligned_cols=38 Identities=34% Similarity=0.883 Sum_probs=33.7
Q ss_pred ccccccccccE-EEecCCCcccCHHhHHHhhccCCCcccc
Q 001640 987 CCICYEMQVDS-LLYRCGHMCTCLKCAHELQWSSGKCPIC 1025 (1039)
Q Consensus 987 C~ICLEnprDv-VLLPCGHmcfC~sCA~kLsksskkCPIC 1025 (1039)
|+||++...+. ++++|||. ||..|+.++.....+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999998 68999999 9999999999888899998
No 14
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.25 E-value=4.4e-07 Score=72.27 Aligned_cols=40 Identities=33% Similarity=0.736 Sum_probs=34.8
Q ss_pred ccccccccc---ccEEEecCCCcccCHHhHHHhhccCCCccccc
Q 001640 986 SCCICYEMQ---VDSLLYRCGHMCTCLKCAHELQWSSGKCPICR 1026 (1039)
Q Consensus 986 eC~ICLEnp---rDvVLLPCGHmcfC~sCA~kLsksskkCPICR 1026 (1039)
.|+||++.. ..++.++|||+ ||..|+..|.+...+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 699999965 35778899999 99999999998889999997
No 15
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.14 E-value=6.4e-07 Score=100.32 Aligned_cols=54 Identities=31% Similarity=0.643 Sum_probs=47.3
Q ss_pred ccccccccccccccEEEecCCCcccCHHhHHHhhcc--CCCcccccccccceeeccc
Q 001640 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWS--SGKCPICRAPIDDVVRAFM 1037 (1039)
Q Consensus 983 ek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsks--skkCPICRApI~~VIRIYl 1037 (1039)
.-..|.||-++.+++.+-||||+ +|..|...|... +.+||+||..|++...|.+
T Consensus 368 TFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred hHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 34679999999999999999999 999999999843 6799999999998766654
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.05 E-value=3.2e-06 Score=64.21 Aligned_cols=43 Identities=40% Similarity=0.931 Sum_probs=35.2
Q ss_pred ccccccccccc-EEEecCCCcccCHHhHHHhhcc-CCCcccccccc
Q 001640 986 SCCICYEMQVD-SLLYRCGHMCTCLKCAHELQWS-SGKCPICRAPI 1029 (1039)
Q Consensus 986 eC~ICLEnprD-vVLLPCGHmcfC~sCA~kLsks-skkCPICRApI 1029 (1039)
.|+||++.... +.+.+|||. ||..|...+... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999998844 445559999 999999998876 67899999764
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.01 E-value=2.4e-06 Score=90.44 Aligned_cols=53 Identities=34% Similarity=0.834 Sum_probs=41.6
Q ss_pred Ccccccccccccccc---------cEEEecCCCcccCHHhHHHhhcc------CCCcccccccccceee
Q 001640 981 APKKRSCCICYEMQV---------DSLLYRCGHMCTCLKCAHELQWS------SGKCPICRAPIDDVVR 1034 (1039)
Q Consensus 981 ~eek~eC~ICLEnpr---------DvVLLPCGHmcfC~sCA~kLsks------skkCPICRApI~~VIR 1034 (1039)
......|.|||+... -.+|.+|+|. ||..|...|... ...||+||..+..+++
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 445689999998631 2577899999 999999999953 2359999999887653
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.00 E-value=3.8e-06 Score=70.15 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=41.3
Q ss_pred ccccccccccccEEEecCCCcccCHHhHHHhhccCCCccccccccc
Q 001640 985 RSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPID 1030 (1039)
Q Consensus 985 ~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~ 1030 (1039)
..|+||++...+.+++||||. ||..|...+....+.||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence 469999999999999999999 999999999877889999999873
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.95 E-value=5.7e-06 Score=60.66 Aligned_cols=38 Identities=37% Similarity=0.910 Sum_probs=34.2
Q ss_pred ccccccccccEEEecCCCcccCHHhHHHhhc-cCCCcccc
Q 001640 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQW-SSGKCPIC 1025 (1039)
Q Consensus 987 C~ICLEnprDvVLLPCGHmcfC~sCA~kLsk-sskkCPIC 1025 (1039)
|.||++....+++++|||. ||..|...+.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 8899999888999999999 99999999876 55679998
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=4.5e-06 Score=94.43 Aligned_cols=52 Identities=29% Similarity=0.615 Sum_probs=45.4
Q ss_pred CCCcccccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccc
Q 001640 979 YGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDD 1031 (1039)
Q Consensus 979 d~~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~ 1031 (1039)
........|.||++.....++++|||. ||..|...+......||+|+.++..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345667899999999999999999999 9999999988777789999998754
No 21
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.9e-06 Score=96.55 Aligned_cols=53 Identities=30% Similarity=0.662 Sum_probs=44.8
Q ss_pred cccccccccccccEEEecCCCcccCHHhHHHhhc-----cCCCcccccccccc--eeeccc
Q 001640 984 KRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQW-----SSGKCPICRAPIDD--VVRAFM 1037 (1039)
Q Consensus 984 k~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsk-----sskkCPICRApI~~--VIRIYl 1037 (1039)
...|+||++.+..++...|||+ ||..|.-.... .-+.||+||..|.- +..+|.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 7899999999999999999999 99999988764 34689999998866 555553
No 22
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.1e-05 Score=88.02 Aligned_cols=91 Identities=23% Similarity=0.471 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCCcccccccccccccc---------
Q 001640 925 TELIYDLRGQIEQLHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQV--------- 995 (1039)
Q Consensus 925 mE~I~DLRgQIeQLQqEMSELRKsLQSCmEmQ~eLQrSlrQEVs~Lqg~~~~S~d~~eek~eC~ICLEnpr--------- 995 (1039)
+..|.+.--.+-.|.+.+.++-+..+.|-++.+-+.-..... -....+.|.|||+...
T Consensus 241 i~l~r~~~t~~~AL~~~i~~~~~~~r~~kdl~~~~~t~t~eq-------------l~n~D~~C~ICmde~~h~~~~~~~~ 307 (491)
T COG5243 241 IYLIRQMYTCFYALFRRIREHARFRRATKDLNAMYPTATEEQ-------------LTNSDRTCTICMDEMFHPDHEPLPR 307 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcchhhhhh-------------hcCCCCeEEEecccccCCCCccCcc
Confidence 555666666677888888888777777777654332211000 1345689999999622
Q ss_pred ----cEEEecCCCcccCHHhHHHhhccCCCcccccccc
Q 001640 996 ----DSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPI 1029 (1039)
Q Consensus 996 ----DvVLLPCGHmcfC~sCA~kLsksskkCPICRApI 1029 (1039)
...-+||||. +=..|.+.|..+..+|||||.|+
T Consensus 308 ~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 308 GLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 2345799999 88999999999999999999984
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.90 E-value=6.7e-06 Score=64.13 Aligned_cols=38 Identities=42% Similarity=0.897 Sum_probs=34.7
Q ss_pred ccccccccccEE-EecCCCcccCHHhHHHhhc--cCCCcccc
Q 001640 987 CCICYEMQVDSL-LYRCGHMCTCLKCAHELQW--SSGKCPIC 1025 (1039)
Q Consensus 987 C~ICLEnprDvV-LLPCGHmcfC~sCA~kLsk--sskkCPIC 1025 (1039)
|.||++.....+ +++|||. ||..|+.++.. ...+||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 899999999888 9999999 99999999987 56689998
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.85 E-value=1e-05 Score=65.07 Aligned_cols=41 Identities=46% Similarity=0.970 Sum_probs=35.2
Q ss_pred ccccccccc---ccEEEecCCCcccCHHhHHHhhccCCCcccccc
Q 001640 986 SCCICYEMQ---VDSLLYRCGHMCTCLKCAHELQWSSGKCPICRA 1027 (1039)
Q Consensus 986 eC~ICLEnp---rDvVLLPCGHmcfC~sCA~kLsksskkCPICRA 1027 (1039)
.|.||+... ...++++|||. ||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 388999876 45888999999 999999999866779999984
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.81 E-value=1.3e-05 Score=64.64 Aligned_cols=38 Identities=34% Similarity=0.800 Sum_probs=30.1
Q ss_pred ccccccccccEEEecCCCcccCHHhHHHhhccC----CCcccc
Q 001640 987 CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSS----GKCPIC 1025 (1039)
Q Consensus 987 C~ICLEnprDvVLLPCGHmcfC~sCA~kLskss----kkCPIC 1025 (1039)
|+||++--.+.+.++|||. ||..|+..+.+.. -.||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 9999999988542 369988
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1e-05 Score=87.24 Aligned_cols=48 Identities=29% Similarity=0.610 Sum_probs=41.2
Q ss_pred cccccccccccccccEEEecCCCcccCHHhHHH-hhcc-CCCccccccccc
Q 001640 982 PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHE-LQWS-SGKCPICRAPID 1030 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~k-Lsks-skkCPICRApI~ 1030 (1039)
.....|+||++.+-+.+..||||+ ||..|.-. |... ...||+||+.+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 557889999999999999999999 99999988 6644 456999998653
No 27
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=3.8e-05 Score=75.52 Aligned_cols=46 Identities=30% Similarity=0.697 Sum_probs=39.4
Q ss_pred CcccccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccc
Q 001640 981 APKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRA 1027 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRA 1027 (1039)
......|+||++.-....++||||. ||..|+..+....-.||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 4567899999999888899999999 999999997654458999993
No 28
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.40 E-value=7e-05 Score=81.96 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=45.6
Q ss_pred CCCCcccccccccccccccEEEecCCCcccCHHhHHHhhccCCCccccccccc
Q 001640 978 LYGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPID 1030 (1039)
Q Consensus 978 ~d~~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~ 1030 (1039)
.........|.||.+..+..++.+|||. ||.-|++........||+||.+..
T Consensus 19 L~~LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 19 LKGLDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hhcchhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence 3445567889999999999999999999 999999999988899999998653
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.39 E-value=7.6e-05 Score=61.13 Aligned_cols=31 Identities=35% Similarity=0.806 Sum_probs=20.6
Q ss_pred cccccccccc----EEEecCCCcccCHHhHHHhhccC
Q 001640 987 CCICYEMQVD----SLLYRCGHMCTCLKCAHELQWSS 1019 (1039)
Q Consensus 987 C~ICLEnprD----vVLLPCGHmcfC~sCA~kLskss 1019 (1039)
|+||.+ ..+ .++|+|||. ||..|..+|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcC
Confidence 899999 666 788899999 9999999998643
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.37 E-value=0.00014 Score=64.20 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=39.7
Q ss_pred cccccccccccccccEEEecCCCcccCHHhHHHhhcc-CCCcccccccccc
Q 001640 982 PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWS-SGKCPICRAPIDD 1031 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsks-skkCPICRApI~~ 1031 (1039)
+....|+||.+-..+.|++||||. ||..|..+|... ...||+|+.++..
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred CcccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 456789999999999999999988 999999999987 8899999988765
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.32 E-value=7.6e-05 Score=83.01 Aligned_cols=50 Identities=22% Similarity=0.574 Sum_probs=44.6
Q ss_pred CcccccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccc
Q 001640 981 APKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDD 1031 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~ 1031 (1039)
.....-|.||++--...++.||||. ||.-|+++.......||.|+.++..
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 4456789999999888999999999 9999999999888899999988754
No 32
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.31 E-value=0.00018 Score=63.94 Aligned_cols=41 Identities=29% Similarity=0.743 Sum_probs=33.7
Q ss_pred cccccccccc-------------ccEEEecCCCcccCHHhHHHhhccCCCccccc
Q 001640 985 RSCCICYEMQ-------------VDSLLYRCGHMCTCLKCAHELQWSSGKCPICR 1026 (1039)
Q Consensus 985 ~eC~ICLEnp-------------rDvVLLPCGHmcfC~sCA~kLsksskkCPICR 1026 (1039)
..|.||+... ..+++.+|||. |...|+..|.....+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 3499999854 33566799999 99999999999889999998
No 33
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=9e-05 Score=82.73 Aligned_cols=51 Identities=24% Similarity=0.705 Sum_probs=46.2
Q ss_pred cccccccccccccccEEEecCCCcccCHHhHHHhhccCCCccccccccccee
Q 001640 982 PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVV 1033 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VI 1033 (1039)
.+...|+||+..++.++|.||+|. -|+.|+.+.....+.|=+|.+.|..++
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeehh
Confidence 456899999999999999999999 999999998888999999999887643
No 34
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=8.7e-05 Score=81.51 Aligned_cols=51 Identities=31% Similarity=0.682 Sum_probs=44.1
Q ss_pred cccccccccccccccEEEecCCCcccCHHhHHHhhccCC-Cccccccccccee
Q 001640 982 PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSG-KCPICRAPIDDVV 1033 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLskssk-kCPICRApI~~VI 1033 (1039)
.....|.||+-.....+.++|+|. ||+.|+.-..+..+ .||+||.+|..-+
T Consensus 5 ~~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 5 TKKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred ccCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcch
Confidence 346789999999999999999999 99999988776655 5999999998754
No 35
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00011 Score=85.79 Aligned_cols=49 Identities=27% Similarity=0.504 Sum_probs=42.9
Q ss_pred Cccccccccccccccc-----EEEecCCCcccCHHhHHHhhccCCCccccccccc
Q 001640 981 APKKRSCCICYEMQVD-----SLLYRCGHMCTCLKCAHELQWSSGKCPICRAPID 1030 (1039)
Q Consensus 981 ~eek~eC~ICLEnprD-----vVLLPCGHmcfC~sCA~kLsksskkCPICRApI~ 1030 (1039)
......|+||++.... +..+||||. ||..|...|.+....||+||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence 3457899999998777 688999999 999999999999999999998443
No 36
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.07 E-value=0.00038 Score=77.83 Aligned_cols=53 Identities=32% Similarity=0.712 Sum_probs=45.2
Q ss_pred CCCcccccccccccccccEEEecCCCcccCHHhHHHhh--ccCCCcccccccccce
Q 001640 979 YGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQ--WSSGKCPICRAPIDDV 1032 (1039)
Q Consensus 979 d~~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLs--ksskkCPICRApI~~V 1032 (1039)
+..++...|.||-....-+.++||+|. +|..|+..+. ...+.||+||..-..|
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceE
Confidence 446778999999999888899999999 9999998876 4678999999865554
No 37
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00037 Score=76.92 Aligned_cols=48 Identities=29% Similarity=0.641 Sum_probs=39.4
Q ss_pred ccccccccccccccc---EEEecCCCcccCHHhHHHhhc-cCCCccccccccc
Q 001640 982 PKKRSCCICYEMQVD---SLLYRCGHMCTCLKCAHELQW-SSGKCPICRAPID 1030 (1039)
Q Consensus 982 eek~eC~ICLEnprD---vVLLPCGHmcfC~sCA~kLsk-sskkCPICRApI~ 1030 (1039)
.....|.|||++-+. ..++||.|. |=..|..+|.. -..+||+||.+|.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 345899999995332 667899999 99999999996 5679999999874
No 38
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00035 Score=78.25 Aligned_cols=52 Identities=31% Similarity=0.701 Sum_probs=43.3
Q ss_pred cccccccccccccccEE-----E---ecCCCcccCHHhHHHhh--cc-----CCCcccccccccceee
Q 001640 982 PKKRSCCICYEMQVDSL-----L---YRCGHMCTCLKCAHELQ--WS-----SGKCPICRAPIDDVVR 1034 (1039)
Q Consensus 982 eek~eC~ICLEnprDvV-----L---LPCGHmcfC~sCA~kLs--ks-----skkCPICRApI~~VIR 1034 (1039)
.....|.|||+.....+ | .+|-|. ||..|+++|. .. .+.||+||.+...++.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 45789999999876665 4 679999 9999999998 44 6889999998877754
No 39
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00034 Score=78.29 Aligned_cols=50 Identities=22% Similarity=0.571 Sum_probs=39.5
Q ss_pred cccccccccccccccEEE-ecCCCcccCHHhHHHhhc-cCCCcccccccccce
Q 001640 982 PKKRSCCICYEMQVDSLL-YRCGHMCTCLKCAHELQW-SSGKCPICRAPIDDV 1032 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVL-LPCGHmcfC~sCA~kLsk-sskkCPICRApI~~V 1032 (1039)
.....|+||++..+.+.. -.|+|. ||..|+.+..+ .++.||-||+.....
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 345689999998766554 459999 99999988664 567999999877654
No 40
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0012 Score=74.18 Aligned_cols=47 Identities=23% Similarity=0.550 Sum_probs=37.7
Q ss_pred cccccccccccc---EEEecCCCcccCHHhHHHhhccC-CCcccccccccce
Q 001640 985 RSCCICYEMQVD---SLLYRCGHMCTCLKCAHELQWSS-GKCPICRAPIDDV 1032 (1039)
Q Consensus 985 ~eC~ICLEnprD---vVLLPCGHmcfC~sCA~kLskss-kkCPICRApI~~V 1032 (1039)
..|+||++.-.. ..+|||+|. |=..|+..|.... ..||+|+..|...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 699999995433 556899999 7789999999655 4599999877543
No 41
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0051 Score=67.45 Aligned_cols=56 Identities=23% Similarity=0.530 Sum_probs=42.4
Q ss_pred CCCCCCCcccccccccccccccE-EEecCCCcccCHHhHHHhhcc--CCCcccccccccc
Q 001640 975 NNSLYGAPKKRSCCICYEMQVDS-LLYRCGHMCTCLKCAHELQWS--SGKCPICRAPIDD 1031 (1039)
Q Consensus 975 ~~S~d~~eek~eC~ICLEnprDv-VLLPCGHmcfC~sCA~kLsks--skkCPICRApI~~ 1031 (1039)
+.+........+|++|-+.|... +..+|||. +|+.|+..-... .=.||.|..++..
T Consensus 230 ~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 230 KFSSSTGTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred CcccccccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcc
Confidence 33344566789999999988874 45679998 999999876533 2489999987753
No 42
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0024 Score=72.96 Aligned_cols=50 Identities=26% Similarity=0.731 Sum_probs=44.2
Q ss_pred CcccccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccc
Q 001640 981 APKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDD 1031 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~ 1031 (1039)
......|+||+......+..||||. +|..|..+.......||+||.++..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 4677899999999888888899999 9999988877778899999988765
No 43
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.19 E-value=0.0019 Score=56.09 Aligned_cols=46 Identities=24% Similarity=0.681 Sum_probs=37.9
Q ss_pred ccccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccc
Q 001640 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDD 1031 (1039)
Q Consensus 983 ek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~ 1031 (1039)
....|..|......-+++||||+ .|..|-.-. ....||+|..+|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccce-eeccccChh--hccCCCCCCCcccC
Confidence 45689999999888888999999 899997543 36689999998853
No 44
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.89 E-value=0.0061 Score=67.84 Aligned_cols=30 Identities=40% Similarity=0.945 Sum_probs=25.3
Q ss_pred cCCCcccCHHhHHHhhc-cCCCcccccccccc
Q 001640 1001 RCGHMCTCLKCAHELQW-SSGKCPICRAPIDD 1031 (1039)
Q Consensus 1001 PCGHmcfC~sCA~kLsk-sskkCPICRApI~~ 1031 (1039)
+|||. ||..|...+.. ....||.|+.++..
T Consensus 25 ~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 25 VCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 79999 99999999764 44689999987755
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.59 E-value=0.0038 Score=55.81 Aligned_cols=44 Identities=27% Similarity=0.874 Sum_probs=24.2
Q ss_pred ccccccccccccccEE-EecCCCcccCHHhHHHhhccCCCcccccccc
Q 001640 983 KKRSCCICYEMQVDSL-LYRCGHMCTCLKCAHELQWSSGKCPICRAPI 1029 (1039)
Q Consensus 983 ek~eC~ICLEnprDvV-LLPCGHmcfC~sCA~kLsksskkCPICRApI 1029 (1039)
....|.+|.+-.+..| +..|.|. ||..|+..-. +..||+|..|.
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~--~~~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCI--GSECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS---B-TTTGGGGT--TTB-SSS--B-
T ss_pred HhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhc--CCCCCCcCChH
Confidence 4567999999888875 6899999 9999997754 45799999875
No 46
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.38 E-value=0.0057 Score=64.74 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=42.2
Q ss_pred cccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccce
Q 001640 984 KRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDV 1032 (1039)
Q Consensus 984 k~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~V 1032 (1039)
.-.|.||...-...|+..|||. ||..|+..-.+.+.+|-+|.+...+.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred ceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccc
Confidence 3589999999999999999999 99999988888889999998765543
No 47
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=95.16 E-value=0.025 Score=63.22 Aligned_cols=55 Identities=9% Similarity=-0.107 Sum_probs=46.5
Q ss_pred CCCcccccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccceeec
Q 001640 979 YGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRA 1035 (1039)
Q Consensus 979 d~~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VIRI 1035 (1039)
+.......|.+|-.....+++.||||..+|-.|+. ......||.|.--+...++|
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeec
Confidence 45667889999999999999999999999999998 34578999998766666655
No 48
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.0068 Score=67.03 Aligned_cols=48 Identities=25% Similarity=0.574 Sum_probs=42.9
Q ss_pred ccccccccccccEEEecCCCcccCHHhHHHhhccCCCccccccccccee
Q 001640 985 RSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVV 1033 (1039)
Q Consensus 985 ~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VI 1033 (1039)
..|-||...-...|+..|||. ||..|+..-.+.+..|++|.+.+.++.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence 469999999999999999999 999999887778899999999887653
No 49
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.11 E-value=0.0051 Score=74.42 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=40.6
Q ss_pred cccccccccccccccEE---EecCCCcccCHHhHHHhhccCCCccccccccccee
Q 001640 982 PKKRSCCICYEMQVDSL---LYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVV 1033 (1039)
Q Consensus 982 eek~eC~ICLEnprDvV---LLPCGHmcfC~sCA~kLsksskkCPICRApI~~VI 1033 (1039)
-....|++|+..-.+-+ -.+|+|+ ||..|...|.+.-.+||+||..+..++
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheee
Confidence 34578999988655432 2589999 999999999999999999998776554
No 50
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.07 E-value=0.01 Score=65.79 Aligned_cols=47 Identities=30% Similarity=0.914 Sum_probs=38.5
Q ss_pred CcccccccccccccccEEEecC--CCcccCHHhHHHhhccCCCcccccccccce
Q 001640 981 APKKRSCCICYEMQVDSLLYRC--GHMCTCLKCAHELQWSSGKCPICRAPIDDV 1032 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVLLPC--GHmcfC~sCA~kLsksskkCPICRApI~~V 1032 (1039)
..+-..|+||++.....++ .| ||+ +|..|..++. ..||.||.+|..+
T Consensus 45 ~~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~---~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVS---NKCPTCRLPIGNI 93 (299)
T ss_pred chhhccCchhhccCcccce-ecCCCcE-ehhhhhhhhc---ccCCccccccccH
Confidence 4456899999998876665 67 799 9999997665 6899999998754
No 51
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.017 Score=62.95 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=42.9
Q ss_pred ccccccccccccc----ccEEEecCCCcccCHHhHHHhhccCCCcccccccccce
Q 001640 982 PKKRSCCICYEMQ----VDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDV 1032 (1039)
Q Consensus 982 eek~eC~ICLEnp----rDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~V 1032 (1039)
.....|+||.+.. ..++|-||||+ +|..|+.++......||+|-.+..+.
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCccc
Confidence 3678999999954 34778899999 99999999999999999999987654
No 52
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.0095 Score=69.43 Aligned_cols=50 Identities=24% Similarity=0.619 Sum_probs=38.5
Q ss_pred Ccccccccccccc-----------------cccEEEecCCCcccCHHhHHHhhccCC-Ccccccccccc
Q 001640 981 APKKRSCCICYEM-----------------QVDSLLYRCGHMCTCLKCAHELQWSSG-KCPICRAPIDD 1031 (1039)
Q Consensus 981 ~eek~eC~ICLEn-----------------prDvVLLPCGHmcfC~sCA~kLskssk-kCPICRApI~~ 1031 (1039)
......|+|||.. .++..+.||-|+ |-..|...|....+ .||+||.++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3456899999982 112445799999 89999999987445 89999998753
No 53
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.18 E-value=0.019 Score=69.65 Aligned_cols=45 Identities=29% Similarity=0.798 Sum_probs=37.8
Q ss_pred ccccccccccccEEEecCCCcccCHHhHHHhhc--cCCCcccccccccc
Q 001640 985 RSCCICYEMQVDSLLYRCGHMCTCLKCAHELQW--SSGKCPICRAPIDD 1031 (1039)
Q Consensus 985 ~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsk--sskkCPICRApI~~ 1031 (1039)
..|.||++ +..+++.+|||. +|..|...... ....||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 777889999999 99999988774 23479999976643
No 54
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.94 E-value=0.048 Score=56.15 Aligned_cols=53 Identities=25% Similarity=0.595 Sum_probs=37.4
Q ss_pred cccccccccccccEEEecCC-Cccc-----C------HHhHHHhhc-------------------------------cCC
Q 001640 984 KRSCCICYEMQVDSLLYRCG-HMCT-----C------LKCAHELQW-------------------------------SSG 1020 (1039)
Q Consensus 984 k~eC~ICLEnprDvVLLPCG-Hmcf-----C------~sCA~kLsk-------------------------------ssk 1020 (1039)
...|+|||+-|-++|||-|- |--- | ..|..++.+ ..-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 35799999999999999886 3222 2 245555432 023
Q ss_pred Ccccccccccceeecc
Q 001640 1021 KCPICRAPIDDVVRAF 1036 (1039)
Q Consensus 1021 kCPICRApI~~VIRIY 1036 (1039)
.||+||..|.+.+.|.
T Consensus 82 ~CPLCRG~V~GWtvve 97 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVE 97 (162)
T ss_pred cCccccCceeceEEch
Confidence 6999999999987663
No 55
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.78 E-value=0.051 Score=58.56 Aligned_cols=49 Identities=27% Similarity=0.468 Sum_probs=39.4
Q ss_pred Cccccccccccccc----ccEEEecCCCcccCHHhHHHhhccCCCcccccccccc
Q 001640 981 APKKRSCCICYEMQ----VDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDD 1031 (1039)
Q Consensus 981 ~eek~eC~ICLEnp----rDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~ 1031 (1039)
......|+|+.... .-++|.||||+ ||..|...+. ....||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc-ccccccccCCcccc
Confidence 45678999998753 33667799999 9999999995 56689999998754
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=93.56 E-value=0.029 Score=63.85 Aligned_cols=52 Identities=29% Similarity=0.627 Sum_probs=44.8
Q ss_pred CcccccccccccccccEEE-ecCCCcccCHHhHHHhhccCCCccccccccccee
Q 001640 981 APKKRSCCICYEMQVDSLL-YRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVV 1033 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVL-LPCGHmcfC~sCA~kLsksskkCPICRApI~~VI 1033 (1039)
...+..|++|+....+.+. ..|||. ||..|...+......||.|+..+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhh
Confidence 4567999999999999887 599999 999999999988889999988765543
No 57
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.028 Score=62.83 Aligned_cols=45 Identities=22% Similarity=0.647 Sum_probs=31.6
Q ss_pred ccccccccccE--EEecCCCcccCHHhHHHhhccCCCcccccccccceee
Q 001640 987 CCICYEMQVDS--LLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVR 1034 (1039)
Q Consensus 987 C~ICLEnprDv--VLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VIR 1034 (1039)
||.=++.++-+ -++||.|+ ||.+||+.-. .+.||.|--+|..+..
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~--dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHV-FCLECARSDS--DKICPLCDDRVQRIEQ 138 (389)
T ss_pred eecccCCcceeeecccccchh-hhhhhhhcCc--cccCcCcccHHHHHHH
Confidence 33333444433 25799999 9999997654 7799999887765543
No 58
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.039 Score=61.98 Aligned_cols=59 Identities=24% Similarity=0.598 Sum_probs=44.2
Q ss_pred CCCcccccccccccccccE-EEecCCCcccCHHhHHHhhccCCCcccc--cccccceeecccc
Q 001640 979 YGAPKKRSCCICYEMQVDS-LLYRCGHMCTCLKCAHELQWSSGKCPIC--RAPIDDVVRAFMD 1038 (1039)
Q Consensus 979 d~~eek~eC~ICLEnprDv-VLLPCGHmcfC~sCA~kLsksskkCPIC--RApI~~VIRIYld 1038 (1039)
.-......|+||+....+. ++.--|-+ ||+.|+.......+.||+- .+.+...+++|.+
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~~~ 356 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGYPASVDHLIRLFNK 356 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCCcchHHHHHHHhcC
Confidence 3466789999999977664 44344655 9999999998899999984 4555667777653
No 59
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.73 E-value=0.053 Score=46.15 Aligned_cols=41 Identities=39% Similarity=0.936 Sum_probs=21.6
Q ss_pred cccccccc--ccEEEec--CCCcccCHHhHHHhhc-cCCCccccccc
Q 001640 987 CCICYEMQ--VDSLLYR--CGHMCTCLKCAHELQW-SSGKCPICRAP 1028 (1039)
Q Consensus 987 C~ICLEnp--rDvVLLP--CGHmcfC~sCA~kLsk-sskkCPICRAp 1028 (1039)
|++|.+.. .+.-|+| ||+. +|..|..++.. ..+.||-||.+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCC
Confidence 67787753 3334555 7888 89999999986 58899999976
No 60
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=92.53 E-value=0.1 Score=49.01 Aligned_cols=33 Identities=27% Similarity=0.720 Sum_probs=27.8
Q ss_pred EEEecCCCcccCHHhHHHhhcc---CCCccccccccc
Q 001640 997 SLLYRCGHMCTCLKCAHELQWS---SGKCPICRAPID 1030 (1039)
Q Consensus 997 vVLLPCGHmcfC~sCA~kLsks---skkCPICRApI~ 1030 (1039)
.++..|+|. |-..|+.+|... .+.||+||++..
T Consensus 47 lv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 467789999 999999999963 579999998754
No 61
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.37 E-value=0.094 Score=61.01 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=35.6
Q ss_pred CCCCccccccccccccccc----EEEecCCCcccCHHhHHHhhccCCCccccccc
Q 001640 978 LYGAPKKRSCCICYEMQVD----SLLYRCGHMCTCLKCAHELQWSSGKCPICRAP 1028 (1039)
Q Consensus 978 ~d~~eek~eC~ICLEnprD----vVLLPCGHmcfC~sCA~kLsksskkCPICRAp 1028 (1039)
+.......+|+||++..-. ++..+|.|. |=..|..+|. ..+||+||--
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~w~--~~scpvcR~~ 220 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHS-FHCSCLMKWW--DSSCPVCRYC 220 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccc-cchHHHhhcc--cCcChhhhhh
Confidence 3456678999999996433 345689999 6667877775 6689999953
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.11 Score=59.88 Aligned_cols=45 Identities=31% Similarity=0.623 Sum_probs=33.8
Q ss_pred ccccccccccccc---ccEEEecCCCcccCHHhHHHhhc--------cCCCcccccc
Q 001640 982 PKKRSCCICYEMQ---VDSLLYRCGHMCTCLKCAHELQW--------SSGKCPICRA 1027 (1039)
Q Consensus 982 eek~eC~ICLEnp---rDvVLLPCGHmcfC~sCA~kLsk--------sskkCPICRA 1027 (1039)
.....|+||++.. ..++++||+|+ ||..|...... +.-+||-|.-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3567899999965 44889999999 99999987542 2336776653
No 63
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=92.05 E-value=0.038 Score=62.02 Aligned_cols=52 Identities=23% Similarity=0.461 Sum_probs=43.8
Q ss_pred CcccccccccccccccEEE-ecCCCcccCHHhHHHhhccCCCccccccccccee
Q 001640 981 APKKRSCCICYEMQVDSLL-YRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVV 1033 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVL-LPCGHmcfC~sCA~kLsksskkCPICRApI~~VI 1033 (1039)
......|.+|-.=.+++.. .-|-|. ||.+|+.+.....+.||.|...|-+..
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 4456899999998888654 459999 999999998888999999998887654
No 64
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=89.97 E-value=0.65 Score=42.31 Aligned_cols=32 Identities=19% Similarity=0.621 Sum_probs=24.2
Q ss_pred Cccccccccccccccc--EEEecCCCcccCHHhHH
Q 001640 981 APKKRSCCICYEMQVD--SLLYRCGHMCTCLKCAH 1013 (1039)
Q Consensus 981 ~eek~eC~ICLEnprD--vVLLPCGHmcfC~sCA~ 1013 (1039)
......|.||...-.. .+++||||. +...|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 3456789999986544 667899998 7888864
No 65
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=88.39 E-value=0.18 Score=59.80 Aligned_cols=51 Identities=22% Similarity=0.485 Sum_probs=41.4
Q ss_pred CCCCcccccccccccccccEEEecCCCcccCHHhHHHhhc-----cCCCcccccccc
Q 001640 978 LYGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQW-----SSGKCPICRAPI 1029 (1039)
Q Consensus 978 ~d~~eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsk-----sskkCPICRApI 1029 (1039)
+........|.+|.+...+.+...|-|. ||.-|...... .+.+||.|-.++
T Consensus 530 ~~enk~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CccccCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 3445667899999999999999999999 99999966552 356899997643
No 66
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=1.2 Score=45.49 Aligned_cols=46 Identities=28% Similarity=0.759 Sum_probs=28.8
Q ss_pred CcccccccccccccccEEEecCCCcc------cCHHhHHHhhccCC----Ccccccccc
Q 001640 981 APKKRSCCICYEMQVDSLLYRCGHMC------TCLKCAHELQWSSG----KCPICRAPI 1029 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVLLPCGHmc------fC~sCA~kLskssk----kCPICRApI 1029 (1039)
......|-||..... .-.|||.| +|..|.-++...++ .|-+|++..
T Consensus 62 v~ddatC~IC~KTKF---ADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 62 VGDDATCGICHKTKF---ADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcCcchhhhhhccc---ccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 456789999987643 34799996 35555544443322 377777543
No 67
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.41 E-value=0.26 Score=53.89 Aligned_cols=44 Identities=25% Similarity=0.665 Sum_probs=32.7
Q ss_pred ccccccccccc-----cccEEEec-CCCcccCHHhHHHhhccC-CCcc--cccc
Q 001640 983 KKRSCCICYEM-----QVDSLLYR-CGHMCTCLKCAHELQWSS-GKCP--ICRA 1027 (1039)
Q Consensus 983 ek~eC~ICLEn-----prDvVLLP-CGHmcfC~sCA~kLskss-kkCP--ICRA 1027 (1039)
....|+||... .+..++-| |-|. +|.+|...+...+ ..|| -|.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 34689999873 22234457 9999 9999999998654 5899 7864
No 68
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.13 E-value=0.3 Score=61.06 Aligned_cols=50 Identities=26% Similarity=0.543 Sum_probs=35.3
Q ss_pred Ccccccccccccccc--c-----EEEecCCCcccCHHhHHHhhcc--CCCcccccccccc
Q 001640 981 APKKRSCCICYEMQV--D-----SLLYRCGHMCTCLKCAHELQWS--SGKCPICRAPIDD 1031 (1039)
Q Consensus 981 ~eek~eC~ICLEnpr--D-----vVLLPCGHmcfC~sCA~kLsks--skkCPICRApI~~ 1031 (1039)
......|+||+.-.- + -....|.|- |-..|.-+|.++ ...||+||..|.-
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCcccccccc
Confidence 344578999997311 1 112358888 888999999965 4589999988753
No 69
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=84.50 E-value=0.3 Score=56.39 Aligned_cols=52 Identities=31% Similarity=0.691 Sum_probs=0.0
Q ss_pred ccccccccc-------------------ccccEEEecCCCcccCHHhHHHhhcc---------CCCcccccccccc---e
Q 001640 984 KRSCCICYE-------------------MQVDSLLYRCGHMCTCLKCAHELQWS---------SGKCPICRAPIDD---V 1032 (1039)
Q Consensus 984 k~eC~ICLE-------------------nprDvVLLPCGHmcfC~sCA~kLsks---------skkCPICRApI~~---V 1032 (1039)
...|++|+. .+...+|.||||+| =...+.-|... ...||+|-.++.. +
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~ 406 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY 406 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence 677888875 34557789999994 34555555531 2479999999865 4
Q ss_pred eecc
Q 001640 1033 VRAF 1036 (1039)
Q Consensus 1033 IRIY 1036 (1039)
++++
T Consensus 407 vrLi 410 (416)
T PF04710_consen 407 VRLI 410 (416)
T ss_dssp ----
T ss_pred eEEE
Confidence 5544
No 70
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=84.49 E-value=0.46 Score=54.09 Aligned_cols=47 Identities=30% Similarity=0.718 Sum_probs=34.1
Q ss_pred ccccccccccc----ccEEEecCCCcccCHHhHHHhhc-cCCCcccccccccc
Q 001640 984 KRSCCICYEMQ----VDSLLYRCGHMCTCLKCAHELQW-SSGKCPICRAPIDD 1031 (1039)
Q Consensus 984 k~eC~ICLEnp----rDvVLLPCGHmcfC~sCA~kLsk-sskkCPICRApI~~ 1031 (1039)
...|+.|++.. ++..-.|||-. .|..|...+.. ..+.||-||..-.+
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 44599999952 22233467877 89999999874 57899999976544
No 71
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.14 E-value=0.45 Score=53.43 Aligned_cols=42 Identities=29% Similarity=0.588 Sum_probs=33.7
Q ss_pred ccccccccccccEEEec-CCCcccCHHhHHHh-hccCCCcccccc
Q 001640 985 RSCCICYEMQVDSLLYR-CGHMCTCLKCAHEL-QWSSGKCPICRA 1027 (1039)
Q Consensus 985 ~eC~ICLEnprDvVLLP-CGHmcfC~sCA~kL-sksskkCPICRA 1027 (1039)
..|+.|....+..+-.| |||. ||..|+... ..+...||.|-.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 78999998777766665 7888 999999754 456779999975
No 72
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.50 E-value=2.3 Score=53.41 Aligned_cols=75 Identities=20% Similarity=0.329 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCCccccccccccccc--ccEEEecCC
Q 001640 926 ELIYDLRGQIEQLHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQ--VDSLLYRCG 1003 (1039)
Q Consensus 926 E~I~DLRgQIeQLQqEMSELRKsLQSCmEmQ~eLQrSlrQEVs~Lqg~~~~S~d~~eek~eC~ICLEnp--rDvVLLPCG 1003 (1039)
.++.+-+.+|++|+.+|.+- -..|.+...++++-... +. .......|-+|.-.- +-.++.|||
T Consensus 774 ~~L~~~n~rieel~~em~ea---t~~a~~I~~~~~~l~~r--y~----------v~ep~d~C~~C~~~ll~~pF~vf~Cg 838 (911)
T KOG2034|consen 774 DFLEDYNKRIEELQEEMIEA---TELADEIRTEISKLRQR--YR----------VLEPQDSCDHCGRPLLIKPFYVFPCG 838 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHhhcc--eE----------EecCccchHHhcchhhcCcceeeecc
Confidence 34455556677777777653 34455565555553221 11 133456788998742 235567999
Q ss_pred CcccCHHhHHHhh
Q 001640 1004 HMCTCLKCAHELQ 1016 (1039)
Q Consensus 1004 HmcfC~sCA~kLs 1016 (1039)
|. |=..|..+..
T Consensus 839 H~-FH~~Cl~~~v 850 (911)
T KOG2034|consen 839 HC-FHRDCLIRHV 850 (911)
T ss_pred ch-HHHHHHHHHH
Confidence 99 8899987644
No 73
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=83.25 E-value=0.83 Score=39.74 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=29.3
Q ss_pred CcccccccccccccccEEE-ecCCCcccCHHhHHHhh--ccCCCccc
Q 001640 981 APKKRSCCICYEMQVDSLL-YRCGHMCTCLKCAHELQ--WSSGKCPI 1024 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVL-LPCGHmcfC~sCA~kLs--ksskkCPI 1024 (1039)
......|+|.+....+.|. ..|||. |....+..+. .....||+
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 3456899999999999876 489999 9999999998 34568998
No 74
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=82.40 E-value=0.37 Score=54.38 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=41.0
Q ss_pred cccccccccccccccEEEecCCCcccCHHhHHHhh-ccCCCcccccccccc
Q 001640 982 PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQ-WSSGKCPICRAPIDD 1031 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLs-ksskkCPICRApI~~ 1031 (1039)
.....|++|+.+..-+.+++|||-+||..|+.+.. +....||+|..-+..
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~r 184 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTR 184 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhh
Confidence 35678999999999999999999999999988773 555679999754433
No 75
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.64 E-value=0.95 Score=52.33 Aligned_cols=54 Identities=22% Similarity=0.469 Sum_probs=37.9
Q ss_pred ccccccccccccccc---EEEecCCCcccCHHhHHHhhccCC---Ccccccccc--cceeecc
Q 001640 982 PKKRSCCICYEMQVD---SLLYRCGHMCTCLKCAHELQWSSG---KCPICRAPI--DDVVRAF 1036 (1039)
Q Consensus 982 eek~eC~ICLEnprD---vVLLPCGHmcfC~sCA~kLskssk---kCPICRApI--~~VIRIY 1036 (1039)
-.--.|||=.+...+ ..-+.|||+ .|..-+.+|.+.+. +||+|-... .+..++|
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~ 393 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLY 393 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCcccCHHhccccc
Confidence 345689997663222 445689999 89999999997665 899997543 3345555
No 76
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.60 E-value=0.72 Score=51.31 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=39.2
Q ss_pred CCCccccccccccccccc----------EEEecCCCcccCHHhHHHhhc--cCCCcccccccccc
Q 001640 979 YGAPKKRSCCICYEMQVD----------SLLYRCGHMCTCLKCAHELQW--SSGKCPICRAPIDD 1031 (1039)
Q Consensus 979 d~~eek~eC~ICLEnprD----------vVLLPCGHmcfC~sCA~kLsk--sskkCPICRApI~~ 1031 (1039)
....+...|.||-..--. +.-+.|+|. |=..|++-|.. ...+||.|...|..
T Consensus 219 tkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 219 TKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 445677899999774332 334789999 99999999985 44589999987643
No 77
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.62 E-value=0.67 Score=51.83 Aligned_cols=43 Identities=30% Similarity=0.682 Sum_probs=34.6
Q ss_pred cccccccccccccEEEecCC----CcccCHHhHHHhhc-----------cCCCcccccc
Q 001640 984 KRSCCICYEMQVDSLLYRCG----HMCTCLKCAHELQW-----------SSGKCPICRA 1027 (1039)
Q Consensus 984 k~eC~ICLEnprDvVLLPCG----HmcfC~sCA~kLsk-----------sskkCPICRA 1027 (1039)
..-|.+|.+..-|+.|+.|- |- ||+.|.+.-.+ ++.+||+-..
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResIK~Qg~sgevYCPSGdkCPLvgS 325 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESIKQQGASGEVYCPSGDKCPLVGS 325 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccc-eecccCHHHHHhhcCCCceeCCCCCcCcccCC
Confidence 46799999999999999995 77 99999998765 3556776543
No 78
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=79.59 E-value=1.1 Score=38.59 Aligned_cols=45 Identities=29% Similarity=0.775 Sum_probs=27.0
Q ss_pred cccccccccccEEEecCC-CcccCHHhHHHhhccCCCccccccccccee
Q 001640 986 SCCICYEMQVDSLLYRCG-HMCTCLKCAHELQWSSGKCPICRAPIDDVV 1033 (1039)
Q Consensus 986 eC~ICLEnprDvVLLPCG-HmcfC~sCA~kLsksskkCPICRApI~~VI 1033 (1039)
.|.-|.=..+.. +.|. |+ +|..|...|...+..||||..++...+
T Consensus 4 nCKsCWf~~k~L--i~C~dHY-LCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGL--IKCSDHY-LCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSE--EE-SS-E-EEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCe--eeecchh-HHHHHHHHHhccccCCCcccCcCcccc
Confidence 577777766654 3687 66 999999999999999999999887654
No 79
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=79.22 E-value=1.5 Score=37.03 Aligned_cols=40 Identities=25% Similarity=0.587 Sum_probs=29.5
Q ss_pred ccccccc--ccccEEEecCC-----CcccCHHhHHHhhcc--CCCccccc
Q 001640 986 SCCICYE--MQVDSLLYRCG-----HMCTCLKCAHELQWS--SGKCPICR 1026 (1039)
Q Consensus 986 eC~ICLE--nprDvVLLPCG-----HmcfC~sCA~kLsks--skkCPICR 1026 (1039)
.|.||++ ...+.++.||. |. +=..|..+|... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 45567788995 44 236899999843 45899995
No 80
>PHA03096 p28-like protein; Provisional
Probab=78.92 E-value=2.4 Score=47.26 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhcch
Q 001640 739 VSTFLSSDFRDRMDQLMTTRVERQTEL 765 (1039)
Q Consensus 739 VS~fL~s~fRe~~DqLm~S~vqrq~~~ 765 (1039)
|..+++..|--++..+|.+|..-+...
T Consensus 97 Ia~WiSp~fAikVs~iIn~y~~~~~~~ 123 (284)
T PHA03096 97 IAKWISPDFAIKVSKLINYYNANVYMN 123 (284)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCcee
Confidence 678899999999999999999855544
No 81
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=78.90 E-value=1.9 Score=49.62 Aligned_cols=50 Identities=30% Similarity=0.678 Sum_probs=35.6
Q ss_pred CCcccccccccccccccEEEe-cCC----C-----------cc-----cCHHhHHHhhc-------------cCCCcccc
Q 001640 980 GAPKKRSCCICYEMQVDSLLY-RCG----H-----------MC-----TCLKCAHELQW-------------SSGKCPIC 1025 (1039)
Q Consensus 980 ~~eek~eC~ICLEnprDvVLL-PCG----H-----------mc-----fC~sCA~kLsk-------------sskkCPIC 1025 (1039)
...+...|.-||..+.++.|. .|. | .| -|..|..+|.- +...||.|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 345678899999988887775 242 1 11 28899998762 35689999
Q ss_pred cccc
Q 001640 1026 RAPI 1029 (1039)
Q Consensus 1026 RApI 1029 (1039)
|+++
T Consensus 347 Ra~F 350 (358)
T PF10272_consen 347 RAKF 350 (358)
T ss_pred cccc
Confidence 9974
No 82
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.97 E-value=2.1 Score=53.53 Aligned_cols=48 Identities=23% Similarity=0.562 Sum_probs=34.2
Q ss_pred ccccccccccc-cccEEEecCCCcccCHHhHHHhhccCCCcccccccccceee
Q 001640 983 KKRSCCICYEM-QVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVR 1034 (1039)
Q Consensus 983 ek~eC~ICLEn-prDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VIR 1034 (1039)
....|-.|-.. ..-+|.+.|||. +=..|.. ....+||-|+.....+++
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHs-yHqhC~e---~~~~~CP~C~~e~~~~m~ 887 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHS-YHQHCLE---DKEDKCPKCLPELRGVMD 887 (933)
T ss_pred eeeeecccCCccccceeeeecccH-HHHHhhc---cCcccCCccchhhhhhHH
Confidence 34678888764 344677899999 7678876 345689999986555543
No 83
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=75.91 E-value=1.9 Score=49.00 Aligned_cols=50 Identities=22% Similarity=0.608 Sum_probs=31.7
Q ss_pred Ccccccccccccc-------------------cccEEEecCCCcccCHHhHHHhhcc---------CCCcccccccccc
Q 001640 981 APKKRSCCICYEM-------------------QVDSLLYRCGHMCTCLKCAHELQWS---------SGKCPICRAPIDD 1031 (1039)
Q Consensus 981 ~eek~eC~ICLEn-------------------prDvVLLPCGHmcfC~sCA~kLsks---------skkCPICRApI~~ 1031 (1039)
....+.|++|+.. +.+..|-||||+|. ..-+.-|... ...||+|-..+..
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~s-ekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCS-EKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccc-hhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4557899999872 33456789999932 2233333321 3469999887754
No 84
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=75.34 E-value=9.4 Score=39.13 Aligned_cols=49 Identities=27% Similarity=0.624 Sum_probs=40.2
Q ss_pred ccccccccccccccEEEec----CCCcccCHHhHHHhhc---cCCCcccccccccce
Q 001640 983 KKRSCCICYEMQVDSLLYR----CGHMCTCLKCAHELQW---SSGKCPICRAPIDDV 1032 (1039)
Q Consensus 983 ek~eC~ICLEnprDvVLLP----CGHmcfC~sCA~kLsk---sskkCPICRApI~~V 1032 (1039)
.-..|-||.+...+--|+. ||-. .|..|...|++ ....||+|...++..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence 5689999999888877663 8866 89999999885 467899999987764
No 85
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.17 E-value=1.8 Score=46.84 Aligned_cols=31 Identities=35% Similarity=0.850 Sum_probs=25.3
Q ss_pred EEecCCCcccCHHhHHHhhcc-CCCcccccccc
Q 001640 998 LLYRCGHMCTCLKCAHELQWS-SGKCPICRAPI 1029 (1039)
Q Consensus 998 VLLPCGHmcfC~sCA~kLsks-skkCPICRApI 1029 (1039)
-++.|||. +|..|+.++... ...||.||.+.
T Consensus 23 ~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 23 RVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred cccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 34569999 999999999854 45799999884
No 86
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.43 E-value=2.1 Score=48.70 Aligned_cols=50 Identities=38% Similarity=0.816 Sum_probs=38.9
Q ss_pred ccccccccccc--ccEEE--ecCCCcccCHHhHHHhhccCCCcccccccccceee
Q 001640 984 KRSCCICYEMQ--VDSLL--YRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVR 1034 (1039)
Q Consensus 984 k~eC~ICLEnp--rDvVL--LPCGHmcfC~sCA~kLsksskkCPICRApI~~VIR 1034 (1039)
...|+||.+.. .+..+ .||||. +|..|...+....+.||+||++...-..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t~ 302 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNTK 302 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCcc
Confidence 47899999843 22333 468999 9999999999999999999987765443
No 87
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=71.96 E-value=3.2 Score=39.32 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=33.7
Q ss_pred cccccccc-----ccccEEEecCCCcccCHHhHHHhhccCCCcccccccc
Q 001640 985 RSCCICYE-----MQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPI 1029 (1039)
Q Consensus 985 ~eC~ICLE-----nprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI 1029 (1039)
..|+-|.- ..-.++..-|.|. |=.-|+.+|....+.||+||++.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHa-FH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHA-FHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchH-HHHHHHHHHHhhCCCCCCCCcee
Confidence 34555554 1223566789999 88999999999999999999865
No 88
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=71.75 E-value=1.9 Score=56.23 Aligned_cols=52 Identities=23% Similarity=0.643 Sum_probs=38.7
Q ss_pred CCccccccccccccccc---EEEecCCCcccCHHhHHHhhc----------cCCCcccccccccce
Q 001640 980 GAPKKRSCCICYEMQVD---SLLYRCGHMCTCLKCAHELQW----------SSGKCPICRAPIDDV 1032 (1039)
Q Consensus 980 ~~eek~eC~ICLEnprD---vVLLPCGHmcfC~sCA~kLsk----------sskkCPICRApI~~V 1032 (1039)
.+.....|.||+...-. ++-+.|+|+ |=..|.+.+.. .--.||||..+|...
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 34556799999986433 556799999 88999887663 123699999998764
No 89
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=70.71 E-value=2.1 Score=43.49 Aligned_cols=41 Identities=20% Similarity=0.488 Sum_probs=29.9
Q ss_pred cccccccccccccc---EEEecCC------CcccCHHhHHHhhccCCCccc
Q 001640 983 KKRSCCICYEMQVD---SLLYRCG------HMCTCLKCAHELQWSSGKCPI 1024 (1039)
Q Consensus 983 ek~eC~ICLEnprD---vVLLPCG------HmcfC~sCA~kLsksskkCPI 1024 (1039)
....|.||++...+ +|.++|| |+ ||..|..+|....+.=|.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~~~~rDPf 74 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRRERNRDPF 74 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHhhccCCCc
Confidence 35789999996544 7778999 55 999999999533333333
No 90
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=70.07 E-value=3.7 Score=46.57 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=30.4
Q ss_pred ccccccccccccccc---EEEecCCCcccCHHhHHHhhc-----------------------cCCCcccccccccc
Q 001640 982 PKKRSCCICYEMQVD---SLLYRCGHMCTCLKCAHELQW-----------------------SSGKCPICRAPIDD 1031 (1039)
Q Consensus 982 eek~eC~ICLEnprD---vVLLPCGHmcfC~sCA~kLsk-----------------------sskkCPICRApI~~ 1031 (1039)
...+.|+||+-.-.+ ....+|-|+ |=..|...... -...||+||.+|..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 445778888764322 556799999 44455443110 13359999998854
No 91
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=69.24 E-value=1.8 Score=47.43 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=28.3
Q ss_pred cccccccccccccccEEEecC---CC-cccCHHhHHHhhccCCCcccccccccceeecc
Q 001640 982 PKKRSCCICYEMQVDSLLYRC---GH-MCTCLKCAHELQWSSGKCPICRAPIDDVVRAF 1036 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVLLPC---GH-mcfC~sCA~kLsksskkCPICRApI~~VIRIY 1036 (1039)
-....|+||-..+.-.++..= |+ +.+|.-|...|.....+||.|-..-...+..|
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 346899999999998887665 32 23899999999988889999987655554443
No 92
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=68.33 E-value=2.2 Score=52.45 Aligned_cols=46 Identities=28% Similarity=0.626 Sum_probs=38.5
Q ss_pred cccccccccccccEEEecCCCcccCHHhHHHhhcc---CCCccccccccc
Q 001640 984 KRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWS---SGKCPICRAPID 1030 (1039)
Q Consensus 984 k~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsks---skkCPICRApI~ 1030 (1039)
...|+||+......+++.|-|. ||..|....... ...||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhh
Confidence 4689999999888889999999 999999887643 458999996554
No 93
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=66.01 E-value=1.9 Score=38.60 Aligned_cols=46 Identities=35% Similarity=0.740 Sum_probs=19.5
Q ss_pred cccccccccccc-c--EEEe-----cCCCcccCHHhHHHhhc-----------cCCCccccccccc
Q 001640 984 KRSCCICYEMQV-D--SLLY-----RCGHMCTCLKCAHELQW-----------SSGKCPICRAPID 1030 (1039)
Q Consensus 984 k~eC~ICLEnpr-D--vVLL-----PCGHmcfC~sCA~kLsk-----------sskkCPICRApI~ 1030 (1039)
...|.||+...- . ...+ .|++. |=..|...|.. ..++||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999998533 1 1112 45533 22367777753 2457999999885
No 94
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.13 E-value=2.9 Score=51.13 Aligned_cols=37 Identities=30% Similarity=0.830 Sum_probs=28.9
Q ss_pred cccccccccc----cccEEEecCCCcccCHHhHHHhhccCCCcc
Q 001640 984 KRSCCICYEM----QVDSLLYRCGHMCTCLKCAHELQWSSGKCP 1023 (1039)
Q Consensus 984 k~eC~ICLEn----prDvVLLPCGHmcfC~sCA~kLsksskkCP 1023 (1039)
-..|.||+.. ....+++-|||. .|..|+..+. ...||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLY--NASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHh--hccCC
Confidence 4578899663 445778889999 9999999987 44677
No 95
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=62.17 E-value=2 Score=48.31 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=36.7
Q ss_pred cccccccccccccccEEEec----CCC-cccCHHhHHHhhccCCCccccccc
Q 001640 982 PKKRSCCICYEMQVDSLLYR----CGH-MCTCLKCAHELQWSSGKCPICRAP 1028 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVLLP----CGH-mcfC~sCA~kLsksskkCPICRAp 1028 (1039)
.....|+||-..+.-.++.. =|+ ++.|.-|...|.....+||.|...
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45679999999997655433 332 348999999999888899999874
No 96
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=59.25 E-value=3.3 Score=46.23 Aligned_cols=50 Identities=32% Similarity=0.664 Sum_probs=37.3
Q ss_pred ccccccccc----cccEEEecCCCcccCHHhHHHhhccCCCcccccccccceeecc
Q 001640 985 RSCCICYEM----QVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAF 1036 (1039)
Q Consensus 985 ~eC~ICLEn----prDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~VIRIY 1036 (1039)
..|+||.+. ...+.+++|||..- ..|-......+=.||+|-+ +.++..+|
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~~~ 212 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSHYF 212 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHHHH
Confidence 349999884 33366789999954 7888888766679999999 76665554
No 97
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=55.79 E-value=3.4 Score=53.72 Aligned_cols=45 Identities=29% Similarity=0.778 Sum_probs=37.5
Q ss_pred ccccccccccccc-cEEEecCCCcccCHHhHHHhhccCCCccccccc
Q 001640 983 KKRSCCICYEMQV-DSLLYRCGHMCTCLKCAHELQWSSGKCPICRAP 1028 (1039)
Q Consensus 983 ek~eC~ICLEnpr-DvVLLPCGHmcfC~sCA~kLsksskkCPICRAp 1028 (1039)
....|.||.+... -..++.|||. +|..|...|......||+|..-
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHHhccCcchhhh
Confidence 3459999999766 3455689999 9999999999889999999843
No 98
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=55.08 E-value=7.3 Score=38.49 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=27.4
Q ss_pred EEEecCCCcccCHHhHHHhhccCCCccccccc
Q 001640 997 SLLYRCGHMCTCLKCAHELQWSSGKCPICRAP 1028 (1039)
Q Consensus 997 vVLLPCGHmcfC~sCA~kLsksskkCPICRAp 1028 (1039)
++..-|.|. |=.-|+.+|.+....||+|.++
T Consensus 76 VaWG~CNHa-FH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 76 VAWGVCNHA-FHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred EEeeecchH-HHHHHHHHHHhhcCcCCCcCcc
Confidence 556679999 8899999999999999999864
No 99
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=54.99 E-value=4.8 Score=45.54 Aligned_cols=46 Identities=26% Similarity=0.510 Sum_probs=36.2
Q ss_pred cccccccccccccccEEEec---CCC-cccCHHhHHHhhccCCCcccccc
Q 001640 982 PKKRSCCICYEMQVDSLLYR---CGH-MCTCLKCAHELQWSSGKCPICRA 1027 (1039)
Q Consensus 982 eek~eC~ICLEnprDvVLLP---CGH-mcfC~sCA~kLsksskkCPICRA 1027 (1039)
.....|+||-..|.-.++.. =|+ ++.|.-|...|.....+||.|..
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 36799999999997655432 232 24899999999988889999986
No 100
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.01 E-value=9.3 Score=44.73 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=27.7
Q ss_pred ccccccccccccEE-EecCCCcccCHHhHHHhhcc---CCCcccccc
Q 001640 985 RSCCICYEMQVDSL-LYRCGHMCTCLKCAHELQWS---SGKCPICRA 1027 (1039)
Q Consensus 985 ~eC~ICLEnprDvV-LLPCGHmcfC~sCA~kLsks---skkCPICRA 1027 (1039)
..|.=-.....+.. +.-|||+ |=..|...|... ...||+|+-
T Consensus 8 ~Ic~d~~p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 8 HICIDGRPNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred eEeccCCccccccccccchhhH-HHHHHHHHHHccCCccCCCCceee
Confidence 34433333333333 3459999 899999999852 358999993
No 101
>PLN02189 cellulose synthase
Probab=47.66 E-value=15 Score=47.47 Aligned_cols=49 Identities=22% Similarity=0.536 Sum_probs=32.8
Q ss_pred Ccccccccccccccc----cEEEecC---CCcccCHHhHHHhhc-cCCCccccccccc
Q 001640 981 APKKRSCCICYEMQV----DSLLYRC---GHMCTCLKCAHELQW-SSGKCPICRAPID 1030 (1039)
Q Consensus 981 ~eek~eC~ICLEnpr----DvVLLPC---GHmcfC~sCA~kLsk-sskkCPICRApI~ 1030 (1039)
......|.||-+... .-+|+.| |-- .|..|..--.+ .+..||.|+..-+
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fp-vCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchh
Confidence 344569999999622 2344555 333 89999966554 3568999997654
No 102
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=45.62 E-value=9.1 Score=48.02 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=34.6
Q ss_pred cccccccccccccccE-EEec---CCCcccCHHhHHHhhc------cCCCccccccccccee
Q 001640 982 PKKRSCCICYEMQVDS-LLYR---CGHMCTCLKCAHELQW------SSGKCPICRAPIDDVV 1033 (1039)
Q Consensus 982 eek~eC~ICLEnprDv-VLLP---CGHmcfC~sCA~kLsk------sskkCPICRApI~~VI 1033 (1039)
.....|.||+..+.+. -+.| |+|. +|..|+..+.. ....|++|..-|..+-
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 3455666666664442 2345 9999 99999988763 3557899987665543
No 103
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.49 E-value=6.6 Score=42.66 Aligned_cols=45 Identities=27% Similarity=0.624 Sum_probs=33.1
Q ss_pred ccccccccccccc------cEEEec--------CCCcccCHHhHHHhhcc-CCCccccccc
Q 001640 983 KKRSCCICYEMQV------DSLLYR--------CGHMCTCLKCAHELQWS-SGKCPICRAP 1028 (1039)
Q Consensus 983 ek~eC~ICLEnpr------DvVLLP--------CGHmcfC~sCA~kLsks-skkCPICRAp 1028 (1039)
....|.||..... ...++. |||. +|..|...+... +-.||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~ht-lc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHT-LCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH-HHhcchHHHHHHhhhcCCcccce
Confidence 4578999987443 123345 9999 999999988743 3589999864
No 104
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=43.87 E-value=34 Score=33.28 Aligned_cols=44 Identities=23% Similarity=0.511 Sum_probs=27.1
Q ss_pred ccccccccccc-----cccEEEecCCCcccCHHhHHHhhcc-CCCcccccc
Q 001640 983 KKRSCCICYEM-----QVDSLLYRCGHMCTCLKCAHELQWS-SGKCPICRA 1027 (1039)
Q Consensus 983 ek~eC~ICLEn-----prDvVLLPCGHmcfC~sCA~kLsks-skkCPICRA 1027 (1039)
....|.+|... ....+..-|+|. +|..|....... .=.|.+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~-VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHR-VCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEE-EETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCcc-ccCccCCcCCCCCCEEChhhHH
Confidence 45689999874 233566678888 788887653211 125888875
No 105
>PHA02862 5L protein; Provisional
Probab=42.99 E-value=17 Score=37.77 Aligned_cols=45 Identities=20% Similarity=0.467 Sum_probs=30.7
Q ss_pred cccccccccccccEEEecCCCccc----CHHhHHHhhc--cCCCcccccccc
Q 001640 984 KRSCCICYEMQVDSLLYRCGHMCT----CLKCAHELQW--SSGKCPICRAPI 1029 (1039)
Q Consensus 984 k~eC~ICLEnprDvVLLPCGHmcf----C~sCA~kLsk--sskkCPICRApI 1029 (1039)
...|-||++...+. +.||.-.-. =..|...|.. ....||+|+.+.
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 35799999986544 467762110 1489989885 355899999765
No 106
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=42.58 E-value=16 Score=30.60 Aligned_cols=35 Identities=34% Similarity=0.796 Sum_probs=22.5
Q ss_pred cccccccccc--EEEecCC--------CcccCHHhHHHhhc--cCCCcccc
Q 001640 987 CCICYEMQVD--SLLYRCG--------HMCTCLKCAHELQW--SSGKCPIC 1025 (1039)
Q Consensus 987 C~ICLEnprD--vVLLPCG--------HmcfC~sCA~kLsk--sskkCPIC 1025 (1039)
|.||++.... .++.||+ |. .|...|.. ...+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~----~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHR----SCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEEC----CHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHH----HHHHHHHHhcCCCcCCCC
Confidence 7899986433 5678997 44 68988885 45679988
No 107
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=42.15 E-value=9.4 Score=44.77 Aligned_cols=48 Identities=25% Similarity=0.528 Sum_probs=35.1
Q ss_pred cccccccccccc----cccEEEecCCCcccCHHhHHHhhc--cCCCccccccccc
Q 001640 982 PKKRSCCICYEM----QVDSLLYRCGHMCTCLKCAHELQW--SSGKCPICRAPID 1030 (1039)
Q Consensus 982 eek~eC~ICLEn----prDvVLLPCGHmcfC~sCA~kLsk--sskkCPICRApI~ 1030 (1039)
.....|-.|-+. +...-.+||.|+ |=..|+..+.. ...+||-||+-+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 456788899773 333456799999 88999998764 3458999995433
No 108
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=40.03 E-value=20 Score=37.60 Aligned_cols=48 Identities=21% Similarity=0.435 Sum_probs=32.3
Q ss_pred CcccccccccccccccEEEecCCCcc----cCHHhHHHhhc--cCCCcccccccc
Q 001640 981 APKKRSCCICYEMQVDSLLYRCGHMC----TCLKCAHELQW--SSGKCPICRAPI 1029 (1039)
Q Consensus 981 ~eek~eC~ICLEnprDvVLLPCGHmc----fC~sCA~kLsk--sskkCPICRApI 1029 (1039)
......|-||++.... ...||.-.. .=..|...|.. ....|++|..+.
T Consensus 5 s~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 3456799999998653 345765211 01479999885 355899999865
No 109
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=33.26 E-value=32 Score=43.73 Aligned_cols=55 Identities=27% Similarity=0.462 Sum_probs=37.9
Q ss_pred cccccccccccc--cccEEEecCCCcc----cCHHhHHHhhc--cCCCcccccccccceeeccc
Q 001640 982 PKKRSCCICYEM--QVDSLLYRCGHMC----TCLKCAHELQW--SSGKCPICRAPIDDVVRAFM 1037 (1039)
Q Consensus 982 eek~eC~ICLEn--prDvVLLPCGHmc----fC~sCA~kLsk--sskkCPICRApI~~VIRIYl 1037 (1039)
.++..|.||... +-+.++.||...- .=.+|...|.. ..++|-+|..++. +.++|.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~-Fk~IY~ 72 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK-FKDIYK 72 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee-eeeecc
Confidence 456899999875 4457888887321 23478888885 3558999998764 335554
No 110
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.08 E-value=37 Score=42.99 Aligned_cols=93 Identities=18% Similarity=0.357 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCCcccccccccccccc-------cEEEecC
Q 001640 930 DLRGQIEQLHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQV-------DSLLYRC 1002 (1039)
Q Consensus 930 DLRgQIeQLQqEMSELRKsLQSCmEmQ~eLQrSlrQEVs~Lqg~~~~S~d~~eek~eC~ICLEnpr-------DvVLLPC 1002 (1039)
.||..+.++-+.-..--...+.|.+...+.-..+..+....+..+. .......|+.|..... .++.+-|
T Consensus 734 nLrdsl~Kil~dy~~q~el~~~c~~i~~nd~~~l~~k~~~~~~~Gv----~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c 809 (846)
T KOG2066|consen 734 NLRDSLVKILQDYNLQLELRQGCYDILKNDSKSLLNKFLKTARRGV----LVSVEERCSSCFEPNLPSGAAFDSVVVFHC 809 (846)
T ss_pred cHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCe----eEeehhhhhhhcccccccCcccceeeEEEc
Confidence 3555555555544433344577888887766655444332221111 0122348999998544 4667799
Q ss_pred CCcccCHHhHHHhhccCCCccccccc
Q 001640 1003 GHMCTCLKCAHELQWSSGKCPICRAP 1028 (1039)
Q Consensus 1003 GHmcfC~sCA~kLsksskkCPICRAp 1028 (1039)
||+ +=..|...-..+.+ |-+|-..
T Consensus 810 ~h~-yhk~c~~~~~~~~~-~~~~~~~ 833 (846)
T KOG2066|consen 810 GHM-YHKECLMMESLRNA-CNIESGK 833 (846)
T ss_pred cch-hhhcccccHHHhcc-cChhhce
Confidence 999 77888754332222 7666543
No 111
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=32.74 E-value=11 Score=27.89 Aligned_cols=23 Identities=30% Similarity=0.829 Sum_probs=16.7
Q ss_pred cCHHhHHHhhccCCCcccccccc
Q 001640 1007 TCLKCAHELQWSSGKCPICRAPI 1029 (1039)
Q Consensus 1007 fC~sCA~kLsksskkCPICRApI 1029 (1039)
+|..|...+....+.||.|.++|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 46667777777777888887764
No 112
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.34 E-value=19 Score=42.09 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=29.6
Q ss_pred Cccccccccccccccc-EEEecCCCcccCHHhHHHhh
Q 001640 981 APKKRSCCICYEMQVD-SLLYRCGHMCTCLKCAHELQ 1016 (1039)
Q Consensus 981 ~eek~eC~ICLEnprD-vVLLPCGHmcfC~sCA~kLs 1016 (1039)
......|-||++.... ++.+.|||. ||..|.....
T Consensus 67 ~~~~~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~yl 102 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDGEIIGLGCGHP-FCPPCWTGYL 102 (444)
T ss_pred CCccccCCcccCCCcchhhhcCCCcH-HHHHHHHHHh
Confidence 3556899999998875 888899999 9999998854
No 113
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=32.33 E-value=27 Score=40.21 Aligned_cols=53 Identities=23% Similarity=0.493 Sum_probs=33.4
Q ss_pred cccccccccccccc---EEEecCCCcccCHHhHHHhhccCC---Ccccccc--cccceeecc
Q 001640 983 KKRSCCICYEMQVD---SLLYRCGHMCTCLKCAHELQWSSG---KCPICRA--PIDDVVRAF 1036 (1039)
Q Consensus 983 ek~eC~ICLEnprD---vVLLPCGHmcfC~sCA~kLskssk---kCPICRA--pI~~VIRIY 1036 (1039)
.--.|+|-.+...+ .+.+.|||+ .-..-+..+.+.+. +||.|.. ...+.+++|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHV-Iskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvr 395 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHV-ISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVR 395 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccce-eeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhccc
Confidence 34678886553222 556789999 56777777775443 7999963 223344554
No 114
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.22 E-value=43 Score=38.97 Aligned_cols=34 Identities=26% Similarity=0.674 Sum_probs=24.0
Q ss_pred ccccccccccccccc----EEEecCCCcccCHHhHHHhh
Q 001640 982 PKKRSCCICYEMQVD----SLLYRCGHMCTCLKCAHELQ 1016 (1039)
Q Consensus 982 eek~eC~ICLEnprD----vVLLPCGHmcfC~sCA~kLs 1016 (1039)
.....|.||+..... .....|+|. ||..|.....
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~-fC~~C~k~~i 181 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHR-FCKDCVKQHI 181 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccch-hhhHHhHHHh
Confidence 346789999932222 224679999 9999998655
No 115
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=31.00 E-value=16 Score=42.88 Aligned_cols=28 Identities=32% Similarity=0.724 Sum_probs=0.0
Q ss_pred cEEEecCCCcccCHHhHHHhhc------cCCCcccccc
Q 001640 996 DSLLYRCGHMCTCLKCAHELQW------SSGKCPICRA 1027 (1039)
Q Consensus 996 DvVLLPCGHmcfC~sCA~kLsk------sskkCPICRA 1027 (1039)
-.|++.|||+ . -...|.. ....||+||.
T Consensus 303 P~VYl~CGHV-h---G~h~Wg~~~~~~~~~r~CPlCr~ 336 (416)
T PF04710_consen 303 PWVYLNCGHV-H---GYHNWGQDSDRDPRSRTCPLCRQ 336 (416)
T ss_dssp --------------------------------------
T ss_pred ceeeccccce-e---eecccccccccccccccCCCccc
Confidence 4778899998 2 1222221 2568999996
No 116
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.42 E-value=12 Score=35.35 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=24.1
Q ss_pred EEecCCCcccCHHhHHHhhc---cCCCcccccccc
Q 001640 998 LLYRCGHMCTCLKCAHELQW---SSGKCPICRAPI 1029 (1039)
Q Consensus 998 VLLPCGHmcfC~sCA~kLsk---sskkCPICRApI 1029 (1039)
|+--|-|+ |=.-|+.+|.. +.+.||+||+..
T Consensus 47 v~G~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 47 VWGYCLHA-FHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHHHH-HHHHHHHHHhcCccccccCCcchhee
Confidence 34468888 77899999873 457899999864
No 117
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=27.68 E-value=33 Score=42.87 Aligned_cols=43 Identities=30% Similarity=0.780 Sum_probs=28.0
Q ss_pred ccccccccccccc---EEEecCCCcc-------------------cCHHhHHHhhccCCCccccc
Q 001640 984 KRSCCICYEMQVD---SLLYRCGHMC-------------------TCLKCAHELQWSSGKCPICR 1026 (1039)
Q Consensus 984 k~eC~ICLEnprD---vVLLPCGHmc-------------------fC~sCA~kLsksskkCPICR 1026 (1039)
-.=||||-|...+ .++|==||.| ||..|-..-.-....|-+|-
T Consensus 5 VGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP 69 (900)
T KOG0956|consen 5 VGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCP 69 (900)
T ss_pred ccceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeeccc
Confidence 3569999886443 3344335554 89999876554456788885
No 118
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.88 E-value=52 Score=39.10 Aligned_cols=31 Identities=23% Similarity=0.648 Sum_probs=25.4
Q ss_pred EEEecCCCcccCHHhHHHhhc--cCCCccccccc
Q 001640 997 SLLYRCGHMCTCLKCAHELQW--SSGKCPICRAP 1028 (1039)
Q Consensus 997 vVLLPCGHmcfC~sCA~kLsk--sskkCPICRAp 1028 (1039)
++.+.|||. |-..|+.+|.- ....||.|..+
T Consensus 22 ~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 22 IVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred Eeeeccccc-ccHHHHHHHHhhhhhhhCcccCCh
Confidence 677899999 99999999982 34579999754
No 119
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=25.71 E-value=32 Score=39.68 Aligned_cols=41 Identities=20% Similarity=0.505 Sum_probs=23.1
Q ss_pred cEEEecCCCcccC--HHhHHHhhccCCCcccccccccceeeccc
Q 001640 996 DSLLYRCGHMCTC--LKCAHELQWSSGKCPICRAPIDDVVRAFM 1037 (1039)
Q Consensus 996 DvVLLPCGHmcfC--~sCA~kLsksskkCPICRApI~~VIRIYl 1037 (1039)
-.|.+.|||+--- ..|-..--.....||+||. +--++.+|+
T Consensus 316 P~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~-~gp~V~L~l 358 (429)
T KOG3842|consen 316 PWVYLNCGHVHGYHNWGVRENTGQRERECPMCRV-VGPYVPLWL 358 (429)
T ss_pred CeEEEeccccccccccccccccCcccCcCCeeee-ecceeeeec
Confidence 3677899998321 1222222234668999996 333555543
No 120
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.95 E-value=30 Score=35.43 Aligned_cols=43 Identities=28% Similarity=0.507 Sum_probs=27.5
Q ss_pred ccccccccccEEEecCCCc---ccCHHhHHHhhccCCCcccccccccce
Q 001640 987 CCICYEMQVDSLLYRCGHM---CTCLKCAHELQWSSGKCPICRAPIDDV 1032 (1039)
Q Consensus 987 C~ICLEnprDvVLLPCGHm---cfC~sCA~kLsksskkCPICRApI~~V 1032 (1039)
-.||.....-+....-.|- .||..|..... -.||+|.++|.+-
T Consensus 7 aqic~ngh~attaadq~pel~eafcskcgeati---~qcp~csasirgd 52 (160)
T COG4306 7 AQICLNGHVATTAADQSPELMEAFCSKCGEATI---TQCPICSASIRGD 52 (160)
T ss_pred hhhcCCCceeeccccCCHHHHHHHHhhhchHHH---hcCCccCCccccc
Confidence 4567766554443333332 38999976543 3799999999763
No 121
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.53 E-value=36 Score=35.73 Aligned_cols=42 Identities=29% Similarity=0.500 Sum_probs=27.7
Q ss_pred cccccccccEEEecCC---CcccCHHhHHHhhccCCCcccccccccce
Q 001640 988 CICYEMQVDSLLYRCG---HMCTCLKCAHELQWSSGKCPICRAPIDDV 1032 (1039)
Q Consensus 988 ~ICLEnprDvVLLPCG---HmcfC~sCA~kLsksskkCPICRApI~~V 1032 (1039)
-||+.-+....-+.=. -.-||..|..+.. ..||.|..+|.+.
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCCc
Confidence 4677655543322222 1238999998866 4799999999875
No 122
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=23.25 E-value=55 Score=27.95 Aligned_cols=43 Identities=26% Similarity=0.572 Sum_probs=18.3
Q ss_pred ccccccccccccEE-EecCCCcccCHHhHHHh--hc--cCCCccccccc
Q 001640 985 RSCCICYEMQVDSL-LYRCGHMCTCLKCAHEL--QW--SSGKCPICRAP 1028 (1039)
Q Consensus 985 ~eC~ICLEnprDvV-LLPCGHmcfC~sCA~kL--sk--sskkCPICRAp 1028 (1039)
..|+|.+......+ ...|.|+ -|.+=..=+ .. ..=.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcCc
Confidence 46888888766654 4579999 454332222 11 12369999864
No 123
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.07 E-value=39 Score=38.71 Aligned_cols=27 Identities=30% Similarity=0.823 Sum_probs=20.5
Q ss_pred CCCcccCHHhHHHhhc-------------cCCCcccccccc
Q 001640 1002 CGHMCTCLKCAHELQW-------------SSGKCPICRAPI 1029 (1039)
Q Consensus 1002 CGHmcfC~sCA~kLsk-------------sskkCPICRApI 1029 (1039)
|.-+ -|.+|...|.. .+..||.||+.+
T Consensus 325 crp~-wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPL-WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccH-HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 5555 69999988652 467899999875
No 124
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.29 E-value=45 Score=42.21 Aligned_cols=38 Identities=26% Similarity=0.559 Sum_probs=27.5
Q ss_pred ccccccccccc--EEEecCCCcccCHHhHHHhhccCCCccc
Q 001640 986 SCCICYEMQVD--SLLYRCGHMCTCLKCAHELQWSSGKCPI 1024 (1039)
Q Consensus 986 eC~ICLEnprD--vVLLPCGHmcfC~sCA~kLsksskkCPI 1024 (1039)
.|.||.-.... .+...|||+ +=..|+..|...+..||-
T Consensus 1030 ~C~~C~l~V~gss~~Cg~C~Hv-~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSSNFCGTCGHV-GHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEeeccchhhcccccc-ccHHHHHHHHhcCCcCCC
Confidence 45555543222 344689999 889999999998889984
No 125
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=21.94 E-value=43 Score=32.34 Aligned_cols=39 Identities=31% Similarity=0.614 Sum_probs=28.8
Q ss_pred cccccccccccccEEEecCCCcccCHHhHHHhhccCCCcccccccccce
Q 001640 984 KRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDV 1032 (1039)
Q Consensus 984 k~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~V 1032 (1039)
...|.||..... .=||. +|..||-+- +.|.+|-..|.++
T Consensus 44 ~~~C~~CK~~v~-----q~g~~-YCq~CAYkk----GiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVH-----QPGAK-YCQTCAYKK----GICAMCGKKILDT 82 (90)
T ss_pred Cccccccccccc-----cCCCc-cChhhhccc----CcccccCCeeccc
Confidence 568999976522 33666 799998554 4999999998665
No 126
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.09 E-value=99 Score=35.02 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=33.1
Q ss_pred CCCcccccccccccc----cccEEEecCCCcccCHHhHHHhhccCCCcccccccccc
Q 001640 979 YGAPKKRSCCICYEM----QVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDD 1031 (1039)
Q Consensus 979 d~~eek~eC~ICLEn----prDvVLLPCGHmcfC~sCA~kLsksskkCPICRApI~~ 1031 (1039)
+.......|+|---. .+=+++.+|||+ |=..-...+. ...|++|.+....
T Consensus 106 D~~~a~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeik--as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 106 DTQRARFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIK--ASVCHVCGAAYQE 159 (293)
T ss_pred ccccceeecccccceecceEEEEEEecccee-ccHHHHHHhh--hccccccCCcccc
Confidence 344556788886543 333677899999 6555444443 5689999987654
No 127
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.00 E-value=9.2e+02 Score=28.72 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001640 926 ELIYDLRGQIEQLHREMSELRK 947 (1039)
Q Consensus 926 E~I~DLRgQIeQLQqEMSELRK 947 (1039)
.+-+..+..|++++.+++.|++
T Consensus 218 klR~r~eeeme~~~aeq~slkR 239 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKR 239 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566677777777777765
No 128
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.53 E-value=54 Score=38.16 Aligned_cols=41 Identities=32% Similarity=0.754 Sum_probs=25.6
Q ss_pred cccccccccc---c--ccEEEecCCCcccCHHhHHHhhccCCCcccc
Q 001640 984 KRSCCICYEM---Q--VDSLLYRCGHMCTCLKCAHELQWSSGKCPIC 1025 (1039)
Q Consensus 984 k~eC~ICLEn---p--rDvVLLPCGHmcfC~sCA~kLsksskkCPIC 1025 (1039)
-..|++|.-. . -..+.-.|||. ||+.|...|...++.|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~-fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQ-FCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeecccc-chhhcCcchhhCCccccCc
Confidence 4566666553 1 11223358998 9999998887666656433
No 129
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=20.06 E-value=67 Score=37.36 Aligned_cols=43 Identities=26% Similarity=0.530 Sum_probs=31.9
Q ss_pred ccccccccccccc---EEEecCCCcccCHHhHHHhhccCCCcccccc
Q 001640 984 KRSCCICYEMQVD---SLLYRCGHMCTCLKCAHELQWSSGKCPICRA 1027 (1039)
Q Consensus 984 k~eC~ICLEnprD---vVLLPCGHmcfC~sCA~kLsksskkCPICRA 1027 (1039)
...|-.|.+.... ...-.|.|. ||..|..-+-..-..||.|.-
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNV-FCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccce-eeccchHHHHhhhhcCCCcCC
Confidence 3459999664443 333457788 999999888877789999973
No 130
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=20.02 E-value=43 Score=44.36 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=33.5
Q ss_pred cccccccccccccEEEecCCCcc----cCHHhHHHhhcc---CCCccccccccccee
Q 001640 984 KRSCCICYEMQVDSLLYRCGHMC----TCLKCAHELQWS---SGKCPICRAPIDDVV 1033 (1039)
Q Consensus 984 k~eC~ICLEnprDvVLLPCGHmc----fC~sCA~kLsks---skkCPICRApI~~VI 1033 (1039)
...|+-|-.......+-.||+.. .|..|-..+... ...||.|..++....
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ 723 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccc
Confidence 57888888754444333388552 599998876422 347999998776653
Done!