Query 001640
Match_columns 1039
No_of_seqs 172 out of 1220
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 16:12:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001640.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_938-942//hhsearch_pdb/001640hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6p_A Baculoviral IAP repeat- 1.0 1 1 102.0 2.4 53 982-1038 293-345 (345)
2 2vje_B MDM4 protein; proto-onc 1.0 1 1 99.2 3.6 58 981-1038 4-63 (63)
3 2vje_A E3 ubiquitin-protein li 1.0 1 1 96.6 3.7 57 982-1038 6-64 (64)
4 2ea5_A Cell growth regulator w 1.0 1 1 95.4 4.9 57 979-1039 10-66 (68)
5 2yho_A E3 ubiquitin-protein li 1.0 1 1 92.3 3.3 52 983-1038 17-68 (79)
6 4ic3_A E3 ubiquitin-protein li 1.0 1 1 90.4 3.1 53 982-1038 22-74 (74)
7 2y1n_A E3 ubiquitin-protein li 1.0 1 1 89.0 5.2 55 983-1038 331-386 (389)
8 2ecg_A Baculoviral IAP repeat- 1.0 1 1 88.6 2.6 52 983-1038 24-75 (75)
9 4ayc_A E3 ubiquitin-protein li 1.0 1 1 87.8 7.5 51 983-1034 52-102 (138)
10 2ckl_B Ubiquitin ligase protei 1.0 1 1 75.3 3.3 50 981-1031 51-102 (165)
No 1
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=1.00 E-value=1 Score=102.02 Aligned_cols=53 Identities=40% Similarity=1.006 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 653212122234422799168985247874999521698764454332352551225
Q 001640 982 PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMD 1038 (1039)
Q Consensus 982 eek~eCvIClE~piDaVLLPCGHlClCssCA~kLskssksCPICRApItsVIRVYlA 1038 (1039)
.....|+||++...+++++||||.|||..|+..+. .||+||.+|..++++|+.
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC--
T ss_pred CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCC----CCCCCCCCCCCEEEEECC
T ss_conf 67999972297088537708998567699873287----698988880580886159
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=1.00 E-value=1 Score=99.19 Aligned_cols=58 Identities=31% Similarity=0.767 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCCCCCCEEEE--CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 86532121222344227991--68985247874999521698764454332352551225
Q 001640 981 APKKRSCCICYEMQVDSLLY--RCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMD 1038 (1039)
Q Consensus 981 ~eek~eCvIClE~piDaVLL--PCGHlClCssCA~kLskssksCPICRApItsVIRVYlA 1038 (1039)
......|+||++.+++++++ ||||+++|..|+..+...++.||+||.+|..++++|.+
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCEEEEECC
T ss_conf 884997864698477749992699888379999999998599287969503413977549
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=1.00 E-value=1 Score=96.61 Aligned_cols=57 Identities=28% Similarity=0.744 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCCCCCEEEE--CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 6532121222344227991--68985247874999521698764454332352551225
Q 001640 982 PKKRSCCICYEMQVDSLLY--RCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMD 1038 (1039)
Q Consensus 982 eek~eCvIClE~piDaVLL--PCGHlClCssCA~kLskssksCPICRApItsVIRVYlA 1038 (1039)
.....|+||++..++++++ ||||+++|..|+..|......||+||.+|..++++|++
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHCEEEEECC
T ss_conf 99098975887779779978899986428999999998099497739531231866568
No 4
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=95.42 Aligned_cols=57 Identities=26% Similarity=0.650 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 8886532121222344227991689852478749995216987644543323525512259
Q 001640 979 YGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMDS 1039 (1039)
Q Consensus 979 d~~eek~eCvIClE~piDaVLLPCGHlClCssCA~kLskssksCPICRApItsVIRVYlAS 1039 (1039)
........|+||++..++++|+||||+++|..|+..+. .||+||.+|..++++|..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~~~ 66 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSGPS 66 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCSSC
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCC----CCCCCCCCHHCEEEEECCC
T ss_conf 45789999977484898889988987312687986389----7978774110147851489
No 5
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=1.00 E-value=1 Score=92.35 Aligned_cols=52 Identities=33% Similarity=0.896 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 53212122234422799168985247874999521698764454332352551225
Q 001640 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMD 1038 (1039)
Q Consensus 983 ek~eCvIClE~piDaVLLPCGHlClCssCA~kLskssksCPICRApItsVIRVYlA 1038 (1039)
....|+||++..++++++||||++||..|+..+. .||+||.+|..++++|+.
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBCT
T ss_pred CCCEEEEECCCCCCEEEECCCCHHHHHHHHHHCC----CCCCCCCHHHCEEEEEEC
T ss_conf 9999478185267479978988878999997468----487988421075999707
No 6
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=1.00 E-value=1 Score=90.40 Aligned_cols=53 Identities=30% Similarity=0.798 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 653212122234422799168985247874999521698764454332352551225
Q 001640 982 PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMD 1038 (1039)
Q Consensus 982 eek~eCvIClE~piDaVLLPCGHlClCssCA~kLskssksCPICRApItsVIRVYlA 1038 (1039)
.....|+||++...+.+++||||.+||..|+..|. .||+||.+|..++++|++
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS----BCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCC----CCCCCCCCCCCCEEEEEC
T ss_conf 56999977998999999808999358888635576----477849481084988509
No 7
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=1.00 E-value=1 Score=89.01 Aligned_cols=55 Identities=31% Similarity=0.645 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHC-CCCCCCCCCCCCCCEEECCCC
Q ss_conf 53212122234422799168985247874999521-698764454332352551225
Q 001640 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQW-SSGKCPICRAPIDDVVRAFMD 1038 (1039)
Q Consensus 983 ek~eCvIClE~piDaVLLPCGHlClCssCA~kLsk-ssksCPICRApItsVIRVYlA 1038 (1039)
....|+||++...+++++||||. ||..|+..|.. ....||+||.+|.....++..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCCCCCCCCCCEEEECCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
T ss_conf 89989715768888387479983-317999999965999899998826776057548
No 8
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=88.58 Aligned_cols=52 Identities=33% Similarity=0.846 Sum_probs=47.7
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 53212122234422799168985247874999521698764454332352551225
Q 001640 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMD 1038 (1039)
Q Consensus 983 ek~eCvIClE~piDaVLLPCGHlClCssCA~kLskssksCPICRApItsVIRVYlA 1038 (1039)
....|+||++...+++++||||.+||..|+..+. .||+||.+|..++++|+.
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCS----BCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCC----CCCCCCCEECCCEEEECC
T ss_conf 9999974887899979966999999998830889----790279151072988519
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=87.76 Aligned_cols=51 Identities=29% Similarity=0.659 Sum_probs=45.5
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 5321212223442279916898524787499952169876445433235255
Q 001640 983 KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVR 1034 (1039)
Q Consensus 983 ek~eCvIClE~piDaVLLPCGHlClCssCA~kLskssksCPICRApItsVIR 1034 (1039)
....|+||++...+++++||||. ||..|+..|......||+||.+|.....
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 102 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKTY 102 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEEE
T ss_pred CCCCCCCCCCCCCCCEECCCCCC-CCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 15997562723279667889998-4699999999769969999982788997
No 10
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=1.00 E-value=1 Score=75.32 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCCCCCCEEEE-CCCCCCCCHHHHHHHHCC-CCCCCCCCCCCCC
Q ss_conf 86532121222344227991-689852478749995216-9876445433235
Q 001640 981 APKKRSCCICYEMQVDSLLY-RCGHMCTCLKCAHELQWS-SGKCPICRAPIDD 1031 (1039)
Q Consensus 981 ~eek~eCvIClE~piDaVLL-PCGHlClCssCA~kLsks-sksCPICRApIts 1031 (1039)
......|+||++...+.+.+ ||||. ||..|...|... ...||+||.++..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCCCCCHHHHCCCEECCCCCH-HHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 79999996269276393884899896-28999999998682979999980788
Done!