Query 001641
Match_columns 1039
No_of_seqs 446 out of 2011
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:48:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 2E-125 4E-130 1115.4 46.2 822 16-914 1-855 (913)
2 KOG0243 Kinesin-like protein [ 100.0 3.9E-89 8.4E-94 819.0 72.7 397 6-432 47-468 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 1.6E-92 3.5E-97 819.2 29.1 357 6-398 3-368 (574)
4 KOG0245 Kinesin-like protein [ 100.0 2E-90 4.2E-95 812.0 32.2 390 7-424 3-417 (1221)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 2.8E-86 6E-91 744.9 39.1 339 5-381 4-346 (607)
6 PLN03188 kinesin-12 family pro 100.0 8.9E-84 1.9E-88 778.2 34.1 354 7-394 97-468 (1320)
7 KOG0242 Kinesin-like protein [ 100.0 9.4E-81 2E-85 749.6 29.5 349 7-398 5-364 (675)
8 KOG0241 Kinesin-like protein [ 100.0 1.3E-79 2.8E-84 705.6 34.3 362 7-398 3-383 (1714)
9 cd01373 KISc_KLP2_like Kinesin 100.0 9E-80 1.9E-84 699.0 30.4 325 9-366 2-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 3.3E-79 7.1E-84 694.7 29.4 322 9-366 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 3.4E-77 7.4E-82 679.5 30.1 326 9-364 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 8.2E-77 1.8E-81 680.4 30.9 336 8-373 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.2E-76 2.5E-81 678.8 30.4 333 8-375 2-352 (352)
14 cd01372 KISc_KIF4 Kinesin moto 100.0 2.3E-76 5E-81 674.0 30.6 337 8-367 1-341 (341)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 5.6E-75 1.2E-79 659.5 29.4 323 9-366 2-333 (333)
16 cd01367 KISc_KIF2_like Kinesin 100.0 6.8E-75 1.5E-79 655.5 28.7 307 9-364 2-322 (322)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.3E-74 2.7E-79 655.4 30.9 320 8-366 2-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 1.9E-73 4.1E-78 643.3 28.1 308 9-364 1-319 (319)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 4.2E-73 9.1E-78 641.6 29.4 317 9-366 1-321 (321)
20 cd01375 KISc_KIF9_like Kinesin 100.0 4.3E-73 9.3E-78 644.0 29.0 319 9-364 1-334 (334)
21 KOG0239 Kinesin (KAR3 subfamil 100.0 3.9E-72 8.4E-77 672.2 24.6 326 7-373 313-647 (670)
22 cd01366 KISc_C_terminal Kinesi 100.0 4E-71 8.7E-76 627.9 30.3 321 7-368 1-328 (329)
23 smart00129 KISc Kinesin motor, 100.0 5.5E-71 1.2E-75 628.7 29.9 327 9-373 1-335 (335)
24 KOG0247 Kinesin-like protein [ 100.0 9.9E-68 2.1E-72 607.6 39.1 336 8-376 31-446 (809)
25 KOG0246 Kinesin-like protein [ 100.0 2E-68 4.3E-73 597.6 25.9 323 6-371 206-546 (676)
26 PF00225 Kinesin: Kinesin moto 100.0 5.9E-69 1.3E-73 612.2 19.7 322 15-366 1-335 (335)
27 cd00106 KISc Kinesin motor dom 100.0 9.8E-68 2.1E-72 600.5 29.1 318 9-364 1-328 (328)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.3E-61 2.9E-66 579.7 28.3 290 45-374 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 6.4E-49 1.4E-53 410.5 16.8 179 64-345 8-186 (186)
30 KOG0161 Myosin class II heavy 99.9 1.8E-22 3.9E-27 260.6 46.0 467 367-934 826-1309(1930)
31 PF01576 Myosin_tail_1: Myosin 99.3 7.4E-13 1.6E-17 167.1 0.0 246 649-937 5-254 (859)
32 KOG0161 Myosin class II heavy 99.2 1.7E-06 3.8E-11 114.4 54.5 89 799-888 1375-1463(1930)
33 KOG0612 Rho-associated, coiled 98.9 1.3E-05 2.8E-10 99.8 38.9 255 502-809 508-773 (1317)
34 PRK02224 chromosome segregatio 98.6 0.006 1.3E-07 79.1 55.9 15 84-98 26-40 (880)
35 PRK02224 chromosome segregatio 98.6 0.0046 1E-07 80.2 53.3 56 533-596 375-430 (880)
36 PF12128 DUF3584: Protein of u 98.5 0.014 3.1E-07 77.9 54.6 93 498-591 316-408 (1201)
37 TIGR00606 rad50 rad50. This fa 98.5 0.014 3E-07 78.8 54.8 54 378-436 576-629 (1311)
38 PF07888 CALCOCO1: Calcium bin 98.5 0.0092 2E-07 71.2 46.8 53 854-906 404-456 (546)
39 PRK03918 chromosome segregatio 98.4 0.029 6.3E-07 72.9 57.8 14 85-98 27-40 (880)
40 KOG0977 Nuclear envelope prote 98.3 0.00017 3.7E-09 85.5 26.9 320 502-902 42-384 (546)
41 COG1196 Smc Chromosome segrega 98.2 0.033 7.2E-07 74.3 48.0 29 67-98 13-41 (1163)
42 TIGR00606 rad50 rad50. This fa 98.2 0.058 1.3E-06 72.9 50.3 16 83-98 30-45 (1311)
43 TIGR02169 SMC_prok_A chromosom 98.2 0.024 5.2E-07 75.7 46.6 14 85-98 27-40 (1164)
44 COG5059 KIP1 Kinesin-like prot 98.2 2.6E-08 5.6E-13 120.9 -9.7 257 2-305 299-566 (568)
45 PF01576 Myosin_tail_1: Myosin 98.2 3.8E-07 8.2E-12 116.0 0.0 96 496-596 96-198 (859)
46 TIGR02168 SMC_prok_B chromosom 98.1 0.029 6.3E-07 74.8 45.6 63 839-901 965-1027(1179)
47 KOG0971 Microtubule-associated 98.1 0.026 5.5E-07 69.2 38.9 65 633-697 289-356 (1243)
48 PF07888 CALCOCO1: Calcium bin 98.1 0.014 3.1E-07 69.6 36.1 155 535-696 290-447 (546)
49 TIGR02169 SMC_prok_A chromosom 98.1 0.026 5.6E-07 75.4 43.7 48 847-894 449-496 (1164)
50 KOG4643 Uncharacterized coiled 98.1 0.082 1.8E-06 65.8 48.8 118 499-628 298-434 (1195)
51 KOG0964 Structural maintenance 98.0 0.088 1.9E-06 65.4 42.4 227 497-759 186-426 (1200)
52 KOG4643 Uncharacterized coiled 98.0 0.096 2.1E-06 65.3 43.7 147 726-902 410-558 (1195)
53 PF00038 Filament: Intermediat 98.0 0.052 1.1E-06 61.7 39.4 78 533-627 16-93 (312)
54 KOG0976 Rho/Rac1-interacting s 98.0 0.089 1.9E-06 63.8 48.6 78 832-910 449-526 (1265)
55 TIGR02168 SMC_prok_B chromosom 98.0 0.12 2.7E-06 68.9 46.3 16 83-98 25-40 (1179)
56 PRK03918 chromosome segregatio 97.9 0.18 3.9E-06 65.6 55.1 13 195-207 107-119 (880)
57 KOG4674 Uncharacterized conser 97.9 0.24 5.3E-06 66.3 49.1 28 495-522 805-832 (1822)
58 KOG4674 Uncharacterized conser 97.9 0.25 5.4E-06 66.2 55.8 231 535-765 689-947 (1822)
59 COG1196 Smc Chromosome segrega 97.8 0.19 4E-06 67.3 43.3 13 264-276 160-172 (1163)
60 KOG0971 Microtubule-associated 97.8 0.22 4.8E-06 61.4 40.9 43 653-699 401-443 (1243)
61 PF10174 Cast: RIM-binding pro 97.8 0.27 5.8E-06 62.0 47.8 116 497-632 373-488 (775)
62 KOG0612 Rho-associated, coiled 97.6 0.44 9.4E-06 61.1 41.4 125 533-657 499-632 (1317)
63 KOG4673 Transcription factor T 97.6 0.32 6.9E-06 58.5 46.2 74 528-602 402-477 (961)
64 PRK04863 mukB cell division pr 97.5 0.85 1.8E-05 61.8 47.0 16 83-98 29-44 (1486)
65 PRK01156 chromosome segregatio 97.5 0.71 1.5E-05 60.3 54.9 16 83-98 25-40 (895)
66 PF09726 Macoilin: Transmembra 97.5 0.013 2.9E-07 72.9 24.2 61 810-878 594-654 (697)
67 PF10174 Cast: RIM-binding pro 97.5 0.62 1.3E-05 58.9 52.5 69 597-669 240-308 (775)
68 KOG0994 Extracellular matrix g 97.4 0.74 1.6E-05 58.3 46.5 104 538-641 1418-1529(1758)
69 KOG4673 Transcription factor T 97.4 0.61 1.3E-05 56.2 41.4 29 568-596 399-427 (961)
70 KOG1029 Endocytic adaptor prot 97.4 0.45 9.8E-06 57.9 32.9 18 107-124 43-60 (1118)
71 PRK11637 AmiB activator; Provi 97.4 0.56 1.2E-05 55.9 34.7 18 1002-1019 409-427 (428)
72 PRK04863 mukB cell division pr 97.3 1.8 3.8E-05 58.9 46.1 83 577-662 382-470 (1486)
73 PRK11637 AmiB activator; Provi 97.2 0.15 3.2E-06 60.8 28.0 48 627-674 198-245 (428)
74 PF09755 DUF2046: Uncharacteri 97.2 0.38 8.3E-06 53.7 27.7 93 606-698 175-279 (310)
75 KOG0250 DNA repair protein RAD 97.2 1.5 3.2E-05 56.1 45.6 42 724-765 654-696 (1074)
76 KOG0933 Structural maintenance 97.1 1.5 3.2E-05 55.4 39.1 127 535-664 677-803 (1174)
77 KOG0977 Nuclear envelope prote 97.1 0.69 1.5E-05 55.7 31.1 145 492-637 110-270 (546)
78 KOG1029 Endocytic adaptor prot 97.1 1.3 2.8E-05 54.2 35.9 64 737-824 493-556 (1118)
79 PF09726 Macoilin: Transmembra 97.0 0.26 5.7E-06 61.7 28.0 111 634-766 538-651 (697)
80 KOG0996 Structural maintenance 97.0 2.1 4.5E-05 55.1 40.4 70 840-909 522-591 (1293)
81 KOG0995 Centromere-associated 96.9 1.5 3.4E-05 52.4 43.0 154 606-765 305-460 (581)
82 PF05701 WEMBL: Weak chloropla 96.9 1.8 3.9E-05 52.9 51.9 304 572-913 121-439 (522)
83 PF12128 DUF3584: Protein of u 96.7 4.6 9.9E-05 54.5 58.3 36 597-632 499-534 (1201)
84 PHA02562 46 endonuclease subun 96.6 1.8 3.9E-05 53.3 31.4 17 82-98 28-44 (562)
85 PF00261 Tropomyosin: Tropomyo 96.6 0.62 1.3E-05 51.0 24.3 93 533-629 132-224 (237)
86 KOG0250 DNA repair protein RAD 96.6 3.4 7.3E-05 53.1 32.4 91 576-669 279-372 (1074)
87 PHA02562 46 endonuclease subun 96.6 1.2 2.6E-05 54.9 29.0 98 533-638 218-328 (562)
88 PF05667 DUF812: Protein of un 96.4 4 8.7E-05 50.4 36.8 41 725-765 486-526 (594)
89 PF15070 GOLGA2L5: Putative go 96.4 4.3 9.3E-05 50.4 43.9 167 501-671 49-232 (617)
90 KOG0962 DNA repair protein RAD 96.3 6.1 0.00013 52.0 41.5 379 500-910 242-674 (1294)
91 KOG0976 Rho/Rac1-interacting s 96.3 4.6 0.0001 49.8 42.9 27 611-637 185-211 (1265)
92 KOG0996 Structural maintenance 96.2 6.4 0.00014 50.9 48.5 12 87-98 114-125 (1293)
93 PF00038 Filament: Intermediat 96.2 3.2 7E-05 47.1 39.1 37 729-765 267-304 (312)
94 COG4942 Membrane-bound metallo 96.2 3.1 6.7E-05 48.7 27.0 10 503-512 67-76 (420)
95 COG1579 Zn-ribbon protein, pos 96.2 0.67 1.5E-05 50.4 20.4 116 577-697 58-173 (239)
96 KOG0999 Microtubule-associated 96.1 4.4 9.5E-05 48.1 36.8 95 499-593 12-122 (772)
97 PRK11281 hypothetical protein; 96.1 6.6 0.00014 52.0 32.8 53 647-699 198-253 (1113)
98 PRK01156 chromosome segregatio 95.9 9.2 0.0002 50.1 57.4 45 856-900 677-721 (895)
99 COG0556 UvrB Helicase subunit 95.9 0.0046 1E-07 72.4 2.8 94 46-145 3-100 (663)
100 PRK10929 putative mechanosensi 95.7 11 0.00025 49.7 34.7 35 666-700 201-235 (1109)
101 PF10481 CENP-F_N: Cenp-F N-te 95.7 0.69 1.5E-05 50.3 17.6 165 577-765 17-190 (307)
102 COG4942 Membrane-bound metallo 95.6 6.4 0.00014 46.2 35.3 47 578-627 38-84 (420)
103 KOG0963 Transcription factor/C 95.2 11 0.00024 45.9 46.1 29 932-960 450-478 (629)
104 PF15619 Lebercilin: Ciliary p 95.1 2.9 6.3E-05 44.4 20.1 53 647-699 124-183 (194)
105 PF05557 MAD: Mitotic checkpoi 95.0 0.02 4.4E-07 72.6 4.4 20 747-766 402-421 (722)
106 KOG0995 Centromere-associated 94.9 12 0.00026 45.2 37.7 29 494-522 286-314 (581)
107 KOG0963 Transcription factor/C 94.9 12 0.00027 45.4 34.5 96 646-765 290-397 (629)
108 KOG0933 Structural maintenance 94.5 20 0.00043 46.0 40.9 26 571-596 780-805 (1174)
109 PF05667 DUF812: Protein of un 94.5 17 0.00038 45.0 32.0 241 498-763 331-590 (594)
110 PRK04778 septation ring format 94.2 20 0.00042 44.6 38.4 59 644-708 252-310 (569)
111 KOG2129 Uncharacterized conser 94.2 3.6 7.8E-05 47.2 18.7 45 610-654 254-298 (552)
112 COG1579 Zn-ribbon protein, pos 94.0 9.3 0.0002 41.7 21.1 124 498-656 34-157 (239)
113 PF04849 HAP1_N: HAP1 N-termin 93.9 14 0.0003 41.7 27.2 57 644-704 216-272 (306)
114 PF14915 CCDC144C: CCDC144C pr 93.9 13 0.00029 41.4 31.6 225 600-908 15-241 (305)
115 PF04849 HAP1_N: HAP1 N-termin 93.9 14 0.00031 41.7 27.6 136 533-697 165-300 (306)
116 PF05622 HOOK: HOOK protein; 93.8 0.017 3.7E-07 73.1 0.0 28 533-560 396-423 (713)
117 PF15066 CAGE1: Cancer-associa 93.8 18 0.00039 42.5 27.8 123 598-764 400-523 (527)
118 PF08826 DMPK_coil: DMPK coile 93.7 0.9 2E-05 38.8 10.0 49 844-895 12-60 (61)
119 KOG0964 Structural maintenance 93.6 28 0.00061 44.5 40.2 31 819-849 490-520 (1200)
120 PF05622 HOOK: HOOK protein; 93.6 0.019 4.2E-07 72.6 0.0 24 799-822 498-521 (713)
121 PF05557 MAD: Mitotic checkpoi 93.6 0.02 4.4E-07 72.5 0.0 41 864-904 389-429 (722)
122 PRK09039 hypothetical protein; 93.3 9.7 0.00021 44.1 21.2 78 532-627 78-155 (343)
123 COG2805 PilT Tfp pilus assembl 93.3 0.045 9.7E-07 60.7 2.0 31 68-98 112-142 (353)
124 KOG0980 Actin-binding protein 93.2 31 0.00068 43.7 32.6 52 371-430 325-376 (980)
125 PF00308 Bac_DnaA: Bacterial d 93.1 0.034 7.3E-07 60.1 0.9 49 46-98 3-51 (219)
126 KOG0994 Extracellular matrix g 93.1 37 0.0008 44.1 32.1 35 663-697 1711-1745(1758)
127 PF00261 Tropomyosin: Tropomyo 92.8 17 0.00038 39.7 25.5 87 796-897 141-227 (237)
128 PF12718 Tropomyosin_1: Tropom 92.8 10 0.00022 38.3 17.9 81 499-596 18-98 (143)
129 PRK06893 DNA replication initi 92.8 0.047 1E-06 59.3 1.4 46 46-98 11-56 (229)
130 PF14988 DUF4515: Domain of un 92.6 17 0.00037 39.0 24.4 117 578-697 54-173 (206)
131 PF14988 DUF4515: Domain of un 92.4 18 0.00039 38.8 24.4 81 526-611 38-123 (206)
132 PF08317 Spc7: Spc7 kinetochor 92.4 7 0.00015 44.9 18.4 25 609-633 237-261 (325)
133 TIGR03185 DNA_S_dndD DNA sulfu 92.1 42 0.00091 42.4 34.0 62 606-667 227-288 (650)
134 PF13851 GAS: Growth-arrest sp 91.8 20 0.00044 38.2 22.1 24 537-560 109-132 (201)
135 PRK09039 hypothetical protein; 91.7 21 0.00046 41.4 21.3 36 634-669 130-165 (343)
136 PRK04778 septation ring format 91.6 43 0.00093 41.6 44.4 22 540-561 254-275 (569)
137 KOG0946 ER-Golgi vesicle-tethe 91.6 46 0.001 41.9 29.4 52 581-632 709-760 (970)
138 TIGR03007 pepcterm_ChnLen poly 91.5 31 0.00066 42.0 23.7 110 499-608 165-285 (498)
139 KOG0978 E3 ubiquitin ligase in 91.5 47 0.001 41.7 43.3 76 678-765 428-503 (698)
140 PF09730 BicD: Microtubule-ass 91.2 52 0.0011 41.7 44.1 28 738-765 294-321 (717)
141 PRK06620 hypothetical protein; 91.1 0.081 1.8E-06 57.0 0.8 48 46-98 11-61 (214)
142 PF05701 WEMBL: Weak chloropla 90.9 47 0.001 40.8 56.2 137 533-669 170-309 (522)
143 KOG1853 LIS1-interacting prote 90.9 21 0.00046 38.7 18.2 17 574-590 108-124 (333)
144 KOG4809 Rab6 GTPase-interactin 90.8 44 0.00096 40.2 28.2 141 527-669 420-570 (654)
145 PF05010 TACC: Transforming ac 90.7 27 0.00058 37.5 24.7 28 535-562 62-89 (207)
146 COG3883 Uncharacterized protei 90.3 33 0.00072 38.0 25.0 45 624-668 173-217 (265)
147 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.2 21 0.00045 35.5 18.6 109 581-697 20-129 (132)
148 PF08614 ATG16: Autophagy prot 90.0 4.1 9E-05 43.2 12.5 89 534-626 73-161 (194)
149 PF12325 TMF_TATA_bd: TATA ele 90.0 6.4 0.00014 38.5 12.6 90 535-632 30-119 (120)
150 PF05010 TACC: Transforming ac 89.6 33 0.00071 36.8 23.6 51 598-669 132-182 (207)
151 KOG1899 LAR transmembrane tyro 89.5 22 0.00048 43.1 18.7 96 599-697 192-298 (861)
152 KOG0980 Actin-binding protein 89.5 72 0.0016 40.6 34.9 86 613-698 390-477 (980)
153 PF04111 APG6: Autophagy prote 89.3 5.7 0.00012 45.4 13.7 28 534-561 42-69 (314)
154 KOG0999 Microtubule-associated 89.3 58 0.0013 39.2 43.3 21 378-398 7-27 (772)
155 PF08317 Spc7: Spc7 kinetochor 89.1 48 0.001 38.1 22.7 52 537-596 151-202 (325)
156 PF10473 CENP-F_leu_zip: Leuci 88.9 24 0.00051 35.5 16.0 60 498-562 20-79 (140)
157 KOG4807 F-actin binding protei 88.9 50 0.0011 38.0 33.3 32 401-432 287-318 (593)
158 COG1340 Uncharacterized archae 88.8 46 0.00099 37.5 29.9 59 596-669 191-249 (294)
159 COG2804 PulE Type II secretory 88.7 0.19 4.1E-06 59.7 1.4 31 70-100 247-277 (500)
160 KOG0804 Cytoplasmic Zn-finger 88.6 5.7 0.00012 46.3 12.9 39 193-237 120-159 (493)
161 PRK09087 hypothetical protein; 88.6 0.18 3.9E-06 54.8 1.0 46 46-98 16-61 (226)
162 COG4372 Uncharacterized protei 88.4 54 0.0012 37.8 27.1 8 950-957 436-443 (499)
163 PF06160 EzrA: Septation ring 87.7 82 0.0018 39.1 35.8 57 644-706 248-304 (560)
164 PRK14086 dnaA chromosomal repl 87.7 0.17 3.7E-06 62.0 0.2 49 46-98 283-331 (617)
165 COG0419 SbcC ATPase involved i 87.6 1.1E+02 0.0023 40.4 48.7 18 81-98 25-42 (908)
166 COG5185 HEC1 Protein involved 87.6 67 0.0015 38.0 31.4 126 568-697 254-385 (622)
167 PF15294 Leu_zip: Leucine zipp 87.6 20 0.00043 40.0 15.8 40 653-692 234-276 (278)
168 KOG0962 DNA repair protein RAD 87.5 1.2E+02 0.0026 40.8 47.6 17 379-395 574-590 (1294)
169 KOG4593 Mitotic checkpoint pro 87.5 86 0.0019 39.1 39.1 68 631-698 155-222 (716)
170 PF05483 SCP-1: Synaptonemal c 87.3 87 0.0019 38.9 46.7 54 855-908 575-628 (786)
171 TIGR01005 eps_transp_fam exopo 87.2 37 0.00081 43.6 20.8 63 499-561 198-263 (754)
172 COG1340 Uncharacterized archae 87.2 57 0.0012 36.7 34.7 29 794-822 177-205 (294)
173 PRK08727 hypothetical protein; 86.8 0.27 5.8E-06 53.6 1.1 44 46-98 14-58 (233)
174 PRK05642 DNA replication initi 86.8 0.32 6.9E-06 53.1 1.6 45 46-98 14-62 (234)
175 smart00787 Spc7 Spc7 kinetocho 86.3 36 0.00079 38.9 17.7 52 607-658 230-281 (312)
176 COG0419 SbcC ATPase involved i 86.3 1.3E+02 0.0027 39.8 54.6 25 724-748 526-551 (908)
177 PF15619 Lebercilin: Ciliary p 86.0 51 0.0011 35.1 22.9 169 498-681 15-190 (194)
178 PRK14088 dnaA chromosomal repl 85.9 0.25 5.3E-06 59.1 0.2 48 46-98 100-147 (440)
179 PF11559 ADIP: Afadin- and alp 85.8 23 0.0005 35.9 14.4 72 535-624 52-123 (151)
180 PF04851 ResIII: Type III rest 85.5 0.35 7.7E-06 49.4 1.1 30 69-98 12-42 (184)
181 PF14662 CCDC155: Coiled-coil 85.5 52 0.0011 34.7 23.6 32 531-562 98-129 (193)
182 COG1474 CDC6 Cdc6-related prot 85.4 0.88 1.9E-05 53.0 4.4 28 71-98 31-59 (366)
183 TIGR01843 type_I_hlyD type I s 85.3 84 0.0018 36.9 24.1 11 581-591 168-178 (423)
184 PF10146 zf-C4H2: Zinc finger- 85.3 24 0.00052 38.5 14.9 55 536-602 2-56 (230)
185 KOG0018 Structural maintenance 85.2 1.4E+02 0.0029 39.2 33.6 62 605-666 223-287 (1141)
186 TIGR03185 DNA_S_dndD DNA sulfu 84.7 1.2E+02 0.0027 38.3 37.2 24 742-765 389-412 (650)
187 KOG0979 Structural maintenance 84.6 1.4E+02 0.003 38.8 23.7 34 636-669 327-360 (1072)
188 COG0593 DnaA ATPase involved i 84.5 0.39 8.5E-06 56.3 1.0 50 45-98 81-130 (408)
189 PF13851 GAS: Growth-arrest sp 84.4 62 0.0013 34.6 22.1 142 498-669 30-171 (201)
190 PF10146 zf-C4H2: Zinc finger- 84.3 30 0.00064 37.8 15.1 46 535-595 32-77 (230)
191 PRK08084 DNA replication initi 84.2 0.47 1E-05 51.8 1.4 45 46-98 17-62 (235)
192 PRK00149 dnaA chromosomal repl 83.9 0.41 8.8E-06 57.5 0.8 49 46-98 117-165 (450)
193 PRK12377 putative replication 83.9 0.41 8.8E-06 52.8 0.7 49 47-98 70-118 (248)
194 TIGR03420 DnaA_homol_Hda DnaA 83.8 0.48 1E-05 50.9 1.2 46 46-98 10-55 (226)
195 PF10168 Nup88: Nuclear pore c 83.7 88 0.0019 40.0 21.0 25 670-694 686-710 (717)
196 PF10212 TTKRSYEDQ: Predicted 83.2 1.2E+02 0.0025 36.9 27.0 111 289-425 214-329 (518)
197 KOG0804 Cytoplasmic Zn-finger 83.1 26 0.00056 41.2 14.5 31 526-556 373-403 (493)
198 cd00009 AAA The AAA+ (ATPases 83.0 0.61 1.3E-05 45.1 1.5 29 70-98 8-36 (151)
199 PRK06526 transposase; Provisio 82.6 0.49 1.1E-05 52.4 0.7 16 84-99 101-116 (254)
200 PF15070 GOLGA2L5: Putative go 82.4 1.5E+02 0.0031 37.4 55.9 91 533-623 120-216 (617)
201 TIGR01420 pilT_fam pilus retra 82.3 0.87 1.9E-05 52.7 2.6 31 68-98 109-139 (343)
202 TIGR00362 DnaA chromosomal rep 82.2 0.64 1.4E-05 55.0 1.5 49 46-98 105-153 (405)
203 PRK08903 DnaA regulatory inact 82.2 0.65 1.4E-05 50.1 1.5 47 46-98 13-59 (227)
204 PRK08116 hypothetical protein; 82.1 0.46 1E-05 53.0 0.3 50 46-98 80-131 (268)
205 PF05483 SCP-1: Synaptonemal c 82.1 1.4E+02 0.0031 37.1 51.6 31 590-620 386-416 (786)
206 PF08232 Striatin: Striatin fa 82.1 15 0.00032 36.7 10.9 119 847-969 5-123 (134)
207 TIGR00631 uvrb excinuclease AB 81.9 0.6 1.3E-05 58.5 1.2 93 48-146 2-98 (655)
208 PF09787 Golgin_A5: Golgin sub 81.7 1.4E+02 0.003 36.7 36.0 85 607-699 293-381 (511)
209 KOG1899 LAR transmembrane tyro 81.4 75 0.0016 38.9 17.7 36 605-640 170-205 (861)
210 COG5008 PilU Tfp pilus assembl 81.4 1.1 2.3E-05 49.2 2.7 43 69-111 115-159 (375)
211 PF04111 APG6: Autophagy prote 81.3 22 0.00048 40.7 13.4 25 537-561 11-35 (314)
212 PF07926 TPR_MLP1_2: TPR/MLP1/ 81.3 60 0.0013 32.2 18.7 124 607-763 8-131 (132)
213 PF13245 AAA_19: Part of AAA d 81.3 0.82 1.8E-05 40.9 1.5 25 73-98 3-27 (76)
214 PRK00411 cdc6 cell division co 81.2 0.71 1.5E-05 54.1 1.4 20 79-98 53-72 (394)
215 PF00437 T2SE: Type II/IV secr 81.2 0.88 1.9E-05 50.5 2.1 34 65-98 108-144 (270)
216 PRK14087 dnaA chromosomal repl 81.2 0.54 1.2E-05 56.4 0.4 48 47-98 111-158 (450)
217 PRK10436 hypothetical protein; 81.0 0.72 1.6E-05 55.4 1.4 28 72-99 209-236 (462)
218 PF15254 CCDC14: Coiled-coil d 81.0 1.4E+02 0.0031 37.7 20.3 141 497-669 396-543 (861)
219 PRK10884 SH3 domain-containing 80.8 23 0.00049 38.1 12.4 23 539-561 90-112 (206)
220 TIGR02928 orc1/cdc6 family rep 80.7 0.65 1.4E-05 53.8 0.9 27 72-98 30-57 (365)
221 PRK07952 DNA replication prote 80.4 0.63 1.4E-05 51.1 0.6 50 46-98 67-116 (244)
222 TIGR02538 type_IV_pilB type IV 80.3 0.75 1.6E-05 56.8 1.3 28 72-99 307-334 (564)
223 TIGR02533 type_II_gspE general 80.3 0.82 1.8E-05 55.3 1.6 28 72-99 233-260 (486)
224 cd00046 DEXDc DEAD-like helica 80.3 0.71 1.5E-05 44.1 0.9 15 84-98 3-17 (144)
225 PF00270 DEAD: DEAD/DEAH box h 80.2 3.1 6.7E-05 42.0 5.6 25 72-98 7-31 (169)
226 PF10186 Atg14: UV radiation r 80.1 1.1E+02 0.0023 34.3 18.5 26 536-561 21-46 (302)
227 KOG2129 Uncharacterized conser 79.7 1.3E+02 0.0028 35.2 24.1 42 597-638 160-201 (552)
228 PF10481 CENP-F_N: Cenp-F N-te 79.5 24 0.00052 38.8 11.9 28 535-562 18-45 (307)
229 PF12718 Tropomyosin_1: Tropom 79.4 74 0.0016 32.1 19.4 85 798-894 44-128 (143)
230 cd01131 PilT Pilus retraction 79.4 0.76 1.7E-05 48.8 0.8 18 81-98 1-18 (198)
231 PF13401 AAA_22: AAA domain; P 79.2 0.72 1.5E-05 44.7 0.5 18 81-98 4-21 (131)
232 PF00769 ERM: Ezrin/radixin/mo 79.1 90 0.0019 34.5 16.8 17 653-669 80-96 (246)
233 TIGR03017 EpsF chain length de 79.1 1.5E+02 0.0032 35.4 21.4 105 500-604 176-288 (444)
234 TIGR02525 plasmid_TraJ plasmid 79.0 1 2.2E-05 52.5 1.8 27 71-98 140-166 (372)
235 PF14992 TMCO5: TMCO5 family 79.0 1.2E+02 0.0025 34.1 18.3 115 534-663 62-182 (280)
236 PF13514 AAA_27: AAA domain 79.0 2.5E+02 0.0054 38.0 54.8 57 381-439 152-208 (1111)
237 COG2433 Uncharacterized conser 78.7 71 0.0015 39.2 16.6 58 610-668 444-501 (652)
238 TIGR02524 dot_icm_DotB Dot/Icm 78.2 1.1 2.4E-05 52.1 1.8 26 73-98 126-151 (358)
239 PF09731 Mitofilin: Mitochondr 78.2 1.9E+02 0.004 36.1 25.0 71 571-642 251-322 (582)
240 PF01935 DUF87: Domain of unkn 78.1 0.9 1.9E-05 49.0 0.9 17 82-98 24-40 (229)
241 KOG0979 Structural maintenance 77.9 2.3E+02 0.005 37.0 28.2 31 792-822 866-896 (1072)
242 PF11932 DUF3450: Protein of u 77.9 65 0.0014 35.5 15.5 97 534-659 41-142 (251)
243 smart00382 AAA ATPases associa 77.3 0.97 2.1E-05 43.1 0.8 17 82-98 3-19 (148)
244 TIGR03319 YmdA_YtgF conserved 77.0 1.4E+02 0.003 36.7 19.1 37 989-1033 392-428 (514)
245 TIGR01000 bacteriocin_acc bact 76.8 1.8E+02 0.0039 35.1 23.8 24 644-667 239-262 (457)
246 PF15066 CAGE1: Cancer-associa 76.7 1.7E+02 0.0037 34.8 27.6 49 615-663 459-507 (527)
247 PF03962 Mnd1: Mnd1 family; I 76.6 73 0.0016 33.7 14.6 29 533-561 67-95 (188)
248 KOG4787 Uncharacterized conser 76.2 1.9E+02 0.0042 35.2 20.8 196 536-765 340-543 (852)
249 PF12846 AAA_10: AAA-like doma 76.1 1.1 2.3E-05 49.9 0.8 18 81-98 1-18 (304)
250 PF13604 AAA_30: AAA domain; P 75.8 1.5 3.1E-05 46.6 1.7 28 71-98 8-35 (196)
251 PRK11281 hypothetical protein; 75.8 3E+02 0.0064 37.2 32.1 51 863-913 288-338 (1113)
252 PF15254 CCDC14: Coiled-coil d 75.7 2.3E+02 0.0051 35.9 23.4 24 646-669 534-557 (861)
253 cd01129 PulE-GspE PulE/GspE Th 75.4 1.5 3.2E-05 48.9 1.6 27 72-98 71-97 (264)
254 PRK06835 DNA replication prote 75.3 1.5 3.3E-05 50.4 1.7 28 70-98 173-200 (329)
255 PRK12704 phosphodiesterase; Pr 74.4 2.2E+02 0.0048 35.0 20.3 19 622-640 153-171 (520)
256 PF05673 DUF815: Protein of un 74.4 2.6 5.7E-05 46.1 3.2 46 47-98 23-69 (249)
257 PF00769 ERM: Ezrin/radixin/mo 74.1 1.5E+02 0.0032 32.8 17.6 22 647-668 88-109 (246)
258 KOG0926 DEAH-box RNA helicase 73.6 2.2 4.8E-05 52.9 2.6 19 80-98 270-288 (1172)
259 COG4372 Uncharacterized protei 73.6 1.8E+02 0.004 33.7 32.9 34 634-667 123-156 (499)
260 PF02841 GBP_C: Guanylate-bind 73.5 57 0.0012 37.0 13.8 16 606-621 281-296 (297)
261 TIGR02782 TrbB_P P-type conjug 73.1 1.7 3.7E-05 49.3 1.5 28 70-98 122-149 (299)
262 PRK12422 chromosomal replicati 72.5 1.9 4.1E-05 51.7 1.7 50 45-98 105-158 (445)
263 COG2433 Uncharacterized conser 72.4 58 0.0013 39.9 13.7 16 109-124 164-179 (652)
264 PF06785 UPF0242: Uncharacteri 72.4 1.8E+02 0.0039 33.2 18.0 51 653-703 132-182 (401)
265 PRK08181 transposase; Validate 71.8 1.5 3.2E-05 49.0 0.6 20 78-99 105-124 (269)
266 TIGR02680 conserved hypothetic 71.0 4.2E+02 0.0091 36.7 29.8 37 315-352 196-234 (1353)
267 PRK13894 conjugal transfer ATP 70.9 2 4.3E-05 49.2 1.4 28 70-98 138-165 (319)
268 PF01637 Arch_ATPase: Archaeal 70.7 1.8 4E-05 45.9 1.0 29 70-98 9-37 (234)
269 PF00448 SRP54: SRP54-type pro 70.4 1.6 3.6E-05 46.3 0.5 16 83-98 3-18 (196)
270 PRK10884 SH3 domain-containing 70.1 67 0.0015 34.5 12.5 20 577-596 92-111 (206)
271 PRK08939 primosomal protein Dn 70.1 1.4 3.1E-05 50.1 -0.1 50 48-99 124-174 (306)
272 smart00053 DYNc Dynamin, GTPas 69.7 6.2 0.00013 43.4 4.8 15 84-98 29-43 (240)
273 PTZ00112 origin recognition co 69.4 2.1 4.5E-05 54.4 1.2 28 71-98 769-798 (1164)
274 PF13479 AAA_24: AAA domain 68.8 2 4.4E-05 46.1 0.8 19 81-99 3-21 (213)
275 PF00004 AAA: ATPase family as 68.7 2.1 4.5E-05 41.2 0.8 15 84-98 1-15 (132)
276 KOG4593 Mitotic checkpoint pro 68.7 3.2E+02 0.0068 34.4 45.9 44 722-765 363-412 (716)
277 PRK00106 hypothetical protein; 68.6 3E+02 0.0064 34.0 19.1 121 573-698 41-161 (535)
278 cd01130 VirB11-like_ATPase Typ 68.6 2.5 5.5E-05 44.2 1.4 29 69-98 14-42 (186)
279 PF01695 IstB_IS21: IstB-like 68.5 2.4 5.3E-05 44.2 1.3 30 69-98 35-64 (178)
280 PRK06921 hypothetical protein; 68.5 1.7 3.7E-05 48.5 0.1 18 81-98 117-134 (266)
281 PF13207 AAA_17: AAA domain; P 68.4 2 4.4E-05 41.0 0.7 16 83-98 1-16 (121)
282 PF08172 CASP_C: CASP C termin 68.4 63 0.0014 35.7 12.2 46 571-633 86-131 (248)
283 PF13191 AAA_16: AAA ATPase do 68.1 1.7 3.7E-05 44.6 0.1 22 77-98 20-41 (185)
284 PRK13833 conjugal transfer pro 68.1 2.5 5.5E-05 48.4 1.5 27 71-98 135-161 (323)
285 PF08614 ATG16: Autophagy prot 68.1 57 0.0012 34.5 11.6 26 674-699 159-184 (194)
286 smart00787 Spc7 Spc7 kinetocho 67.7 2.3E+02 0.005 32.5 21.1 27 570-596 171-197 (312)
287 COG1484 DnaC DNA replication p 66.6 2.6 5.6E-05 46.7 1.1 34 62-98 89-122 (254)
288 PF06309 Torsin: Torsin; Inte 66.5 3.7 8E-05 40.5 2.0 55 83-150 54-114 (127)
289 PF06120 Phage_HK97_TLTM: Tail 66.5 2.4E+02 0.0052 32.2 17.7 126 501-630 47-176 (301)
290 KOG1265 Phospholipase C [Lipid 66.4 3.9E+02 0.0084 34.6 22.6 65 635-699 1076-1147(1189)
291 KOG2991 Splicing regulator [RN 66.4 1E+02 0.0023 33.7 12.7 20 314-333 93-112 (330)
292 PF15294 Leu_zip: Leucine zipp 66.1 1.1E+02 0.0025 34.2 13.5 47 577-629 189-235 (278)
293 COG4962 CpaF Flp pilus assembl 65.8 2.9 6.2E-05 47.8 1.3 28 70-98 163-190 (355)
294 KOG0989 Replication factor C, 65.8 3 6.5E-05 46.9 1.3 35 64-98 39-74 (346)
295 PHA02544 44 clamp loader, smal 65.6 2.8 6.1E-05 47.5 1.2 21 78-98 39-60 (316)
296 PF13086 AAA_11: AAA domain; P 65.6 3 6.4E-05 44.3 1.3 16 83-98 19-34 (236)
297 TIGR02903 spore_lon_C ATP-depe 65.4 2.6 5.6E-05 52.6 0.9 43 47-98 150-192 (615)
298 PF10168 Nup88: Nuclear pore c 65.0 4E+02 0.0086 34.2 22.7 19 264-282 371-389 (717)
299 TIGR01069 mutS2 MutS2 family p 65.0 48 0.001 42.7 12.0 7 314-320 353-359 (771)
300 PF02562 PhoH: PhoH-like prote 64.8 3.6 7.7E-05 44.1 1.7 25 72-98 12-36 (205)
301 TIGR03015 pepcterm_ATPase puta 64.7 3.7 8.1E-05 45.2 1.9 22 77-98 39-60 (269)
302 smart00487 DEXDc DEAD-like hel 64.5 4.3 9.3E-05 41.3 2.2 26 72-98 16-41 (201)
303 PF00580 UvrD-helicase: UvrD/R 64.5 3 6.5E-05 46.6 1.1 22 77-98 9-30 (315)
304 PF01580 FtsK_SpoIIIE: FtsK/Sp 64.0 2.8 6.1E-05 44.4 0.7 16 83-98 40-55 (205)
305 KOG4360 Uncharacterized coiled 64.0 3.3E+02 0.0072 33.0 20.6 142 573-765 161-303 (596)
306 PF12325 TMF_TATA_bd: TATA ele 63.9 1.5E+02 0.0033 29.1 14.5 48 373-432 10-57 (120)
307 PRK13900 type IV secretion sys 63.5 3.8 8.1E-05 47.2 1.7 27 71-98 151-177 (332)
308 PRK13851 type IV secretion sys 63.5 3 6.4E-05 48.3 0.8 27 71-98 153-179 (344)
309 KOG4403 Cell surface glycoprot 63.5 3.1E+02 0.0067 32.4 19.1 40 722-762 334-375 (575)
310 PRK12402 replication factor C 63.3 3.5 7.7E-05 47.0 1.5 43 47-98 11-53 (337)
311 PF04156 IncA: IncA protein; 63.2 2E+02 0.0043 30.1 17.1 7 613-619 134-140 (191)
312 PF07798 DUF1640: Protein of u 63.1 2E+02 0.0043 30.0 15.8 23 600-622 129-151 (177)
313 TIGR01069 mutS2 MutS2 family p 62.7 1.6E+02 0.0034 38.2 16.0 19 537-555 517-535 (771)
314 KOG4403 Cell surface glycoprot 62.4 3.2E+02 0.007 32.3 21.4 52 648-699 309-373 (575)
315 PRK13764 ATPase; Provisional 62.3 3.8 8.2E-05 50.7 1.5 24 75-98 251-274 (602)
316 PRK07003 DNA polymerase III su 62.2 4.9 0.00011 50.7 2.4 42 48-98 13-55 (830)
317 PRK06547 hypothetical protein; 62.2 4.4 9.5E-05 42.1 1.7 30 69-98 3-32 (172)
318 PF07106 TBPIP: Tat binding pr 61.9 40 0.00087 34.8 8.8 59 494-562 78-136 (169)
319 KOG0953 Mitochondrial RNA heli 61.5 6.2 0.00014 47.4 3.0 43 83-125 193-238 (700)
320 TIGR01000 bacteriocin_acc bact 61.4 3.6E+02 0.0078 32.5 21.1 27 534-560 171-197 (457)
321 KOG0340 ATP-dependent RNA heli 60.7 20 0.00043 41.1 6.6 28 71-100 36-63 (442)
322 PF05911 DUF869: Plant protein 60.7 4.8E+02 0.01 33.7 27.5 91 532-625 49-150 (769)
323 PF09728 Taxilin: Myosin-like 60.7 3.1E+02 0.0066 31.5 32.9 53 617-669 203-265 (309)
324 TIGR03499 FlhF flagellar biosy 60.5 3.5 7.6E-05 46.4 0.7 16 83-98 196-211 (282)
325 PF13671 AAA_33: AAA domain; P 60.2 3.7 8.1E-05 40.4 0.8 15 84-98 2-16 (143)
326 PF07724 AAA_2: AAA domain (Cd 60.2 3.6 7.8E-05 42.7 0.7 17 82-98 4-20 (171)
327 cd00268 DEADc DEAD-box helicas 60.0 5.5 0.00012 41.8 2.1 26 71-98 28-53 (203)
328 KOG2391 Vacuolar sorting prote 59.9 60 0.0013 37.0 10.0 64 596-684 212-278 (365)
329 PRK09183 transposase/IS protei 59.8 3.7 8E-05 45.6 0.7 16 83-98 104-119 (259)
330 PF00910 RNA_helicase: RNA hel 59.7 3.3 7.2E-05 39.3 0.3 15 84-98 1-15 (107)
331 TIGR03345 VI_ClpV1 type VI sec 59.7 13 0.00029 48.2 5.8 99 82-209 597-696 (852)
332 PRK12723 flagellar biosynthesi 59.6 3.9 8.5E-05 48.0 0.9 18 81-98 174-191 (388)
333 PF13238 AAA_18: AAA domain; P 59.5 3.8 8.3E-05 39.2 0.7 15 84-98 1-15 (129)
334 PF09304 Cortex-I_coil: Cortex 59.4 1.7E+02 0.0037 28.1 12.4 38 841-878 39-76 (107)
335 COG1223 Predicted ATPase (AAA+ 58.9 4.1 8.8E-05 44.8 0.8 18 81-98 151-168 (368)
336 PF07728 AAA_5: AAA domain (dy 58.7 3.9 8.5E-05 40.3 0.6 15 84-98 2-16 (139)
337 PTZ00424 helicase 45; Provisio 58.6 5.2 0.00011 46.9 1.7 26 71-98 57-82 (401)
338 COG1842 PspA Phage shock prote 58.5 2.8E+02 0.006 30.3 16.1 141 729-931 29-171 (225)
339 KOG2373 Predicted mitochondria 58.5 4.5 9.6E-05 46.0 1.1 27 71-98 261-290 (514)
340 COG3883 Uncharacterized protei 58.3 3.1E+02 0.0066 30.7 27.9 20 680-699 87-106 (265)
341 PHA00729 NTP-binding motif con 58.0 5.4 0.00012 43.3 1.6 29 70-98 6-34 (226)
342 PRK14722 flhF flagellar biosyn 57.8 4.4 9.4E-05 47.4 0.9 18 81-98 137-154 (374)
343 PF15397 DUF4618: Domain of un 57.7 3.1E+02 0.0067 30.6 26.1 69 492-561 71-143 (258)
344 PRK03992 proteasome-activating 57.3 1.9 4.1E-05 50.8 -2.2 18 81-98 165-182 (389)
345 KOG1853 LIS1-interacting prote 57.2 3E+02 0.0065 30.3 22.0 21 571-591 45-65 (333)
346 KOG0735 AAA+-type ATPase [Post 57.1 5.5 0.00012 49.3 1.6 49 79-127 699-761 (952)
347 KOG4657 Uncharacterized conser 57.1 2.9E+02 0.0062 30.0 14.0 101 799-907 33-133 (246)
348 PLN00020 ribulose bisphosphate 57.0 4.1 8.9E-05 47.3 0.5 51 47-98 111-165 (413)
349 PRK13729 conjugal transfer pil 56.8 98 0.0021 37.2 11.6 45 860-904 76-120 (475)
350 COG1219 ClpX ATP-dependent pro 56.8 4.9 0.00011 45.4 1.1 17 82-98 98-114 (408)
351 PF05266 DUF724: Protein of un 56.5 2.5E+02 0.0055 29.8 13.6 58 603-671 125-182 (190)
352 smart00763 AAA_PrkA PrkA AAA d 56.2 9 0.0002 44.5 3.1 19 80-98 77-95 (361)
353 PF08581 Tup_N: Tup N-terminal 56.2 1.5E+02 0.0033 26.9 10.2 17 642-658 58-74 (79)
354 COG1382 GimC Prefoldin, chaper 56.1 2.1E+02 0.0045 28.1 12.2 22 600-621 89-110 (119)
355 PF02841 GBP_C: Guanylate-bind 55.6 2E+02 0.0043 32.6 13.8 11 315-325 25-35 (297)
356 TIGR01843 type_I_hlyD type I s 55.6 4E+02 0.0086 31.2 22.8 14 502-515 81-94 (423)
357 PRK11776 ATP-dependent RNA hel 55.6 6.7 0.00014 47.2 2.0 25 72-98 34-58 (460)
358 PF03215 Rad17: Rad17 cell cyc 55.5 6.2 0.00013 48.2 1.7 30 69-98 31-62 (519)
359 KOG1003 Actin filament-coating 55.4 2.8E+02 0.0062 29.4 22.9 36 405-440 4-39 (205)
360 PRK10536 hypothetical protein; 55.3 6.9 0.00015 43.4 1.9 18 81-98 74-91 (262)
361 COG1125 OpuBA ABC-type proline 55.1 3.7 8.1E-05 45.1 -0.2 12 87-98 33-44 (309)
362 PF09744 Jnk-SapK_ap_N: JNK_SA 54.9 2.6E+02 0.0056 28.8 13.0 34 607-640 122-155 (158)
363 COG1201 Lhr Lhr-like helicases 54.8 13 0.00028 47.6 4.3 60 72-145 30-89 (814)
364 PF02456 Adeno_IVa2: Adenoviru 54.8 5 0.00011 45.1 0.7 15 84-98 90-104 (369)
365 PF06785 UPF0242: Uncharacteri 54.8 3.8E+02 0.0082 30.7 17.2 22 535-556 201-222 (401)
366 cd01126 TraG_VirD4 The TraG/Tr 54.8 5.3 0.00012 46.8 1.0 15 84-98 2-16 (384)
367 TIGR02231 conserved hypothetic 54.7 97 0.0021 38.1 11.9 45 839-883 124-168 (525)
368 PF11559 ADIP: Afadin- and alp 54.6 2.4E+02 0.0052 28.4 16.7 92 574-668 55-146 (151)
369 TIGR02881 spore_V_K stage V sp 54.4 5.8 0.00013 43.9 1.2 18 81-98 42-59 (261)
370 PF06156 DUF972: Protein of un 53.9 69 0.0015 30.8 8.1 50 386-440 8-57 (107)
371 PF15397 DUF4618: Domain of un 53.8 3.6E+02 0.0077 30.1 27.0 89 537-627 8-99 (258)
372 PRK15424 propionate catabolism 53.0 17 0.00038 44.6 5.0 33 180-212 321-353 (538)
373 PRK11192 ATP-dependent RNA hel 52.9 7.7 0.00017 46.2 1.9 25 72-98 31-55 (434)
374 COG1136 SalX ABC-type antimicr 52.8 5.9 0.00013 43.0 0.8 26 84-110 34-61 (226)
375 PF12072 DUF3552: Domain of un 52.7 3.2E+02 0.0068 29.2 19.1 82 616-697 60-141 (201)
376 PF09731 Mitofilin: Mitochondr 52.3 5.5E+02 0.012 31.9 22.8 12 138-149 25-36 (582)
377 COG1419 FlhF Flagellar GTP-bin 52.3 6.3 0.00014 46.1 1.0 18 81-98 203-220 (407)
378 PF06414 Zeta_toxin: Zeta toxi 52.1 6.1 0.00013 41.8 0.8 18 81-98 15-32 (199)
379 KOG1937 Uncharacterized conser 52.0 4.9E+02 0.011 31.1 29.9 268 502-819 234-518 (521)
380 PRK04837 ATP-dependent RNA hel 51.3 8.2 0.00018 45.9 1.8 25 72-98 38-62 (423)
381 TIGR01005 eps_transp_fam exopo 51.3 6.5E+02 0.014 32.4 26.6 64 576-639 235-311 (754)
382 PF13555 AAA_29: P-loop contai 51.3 6.4 0.00014 33.9 0.6 15 84-98 26-40 (62)
383 COG2256 MGS1 ATPase related to 51.3 7.3 0.00016 45.4 1.3 44 48-97 21-64 (436)
384 CHL00081 chlI Mg-protoporyphyr 51.2 3.9 8.5E-05 47.3 -0.9 44 46-98 12-55 (350)
385 PF05262 Borrelia_P83: Borreli 51.0 5.3E+02 0.011 31.5 16.7 13 335-347 49-61 (489)
386 COG5185 HEC1 Protein involved 51.0 5.1E+02 0.011 31.1 35.6 60 498-559 260-319 (622)
387 PRK14961 DNA polymerase III su 50.7 5.4 0.00012 46.5 0.2 30 69-98 25-55 (363)
388 KOG0239 Kinesin (KAR3 subfamil 50.5 5.3E+02 0.011 32.9 17.3 20 577-596 240-259 (670)
389 TIGR02902 spore_lonB ATP-depen 50.2 6.7 0.00014 48.2 0.9 44 46-98 60-103 (531)
390 PF09789 DUF2353: Uncharacteri 50.1 4.5E+02 0.0098 30.2 29.0 155 533-699 70-229 (319)
391 KOG2543 Origin recognition com 50.1 6.7 0.00015 45.4 0.8 38 83-143 32-69 (438)
392 PRK12704 phosphodiesterase; Pr 49.9 5.8E+02 0.013 31.4 24.5 14 1007-1020 392-405 (520)
393 PRK13729 conjugal transfer pil 49.8 42 0.00091 40.2 7.2 44 578-624 76-119 (475)
394 PF12775 AAA_7: P-loop contain 49.4 8.3 0.00018 43.2 1.4 26 72-98 25-50 (272)
395 KOG4360 Uncharacterized coiled 49.3 5.7E+02 0.012 31.1 17.1 59 606-669 223-282 (596)
396 PRK09376 rho transcription ter 49.1 28 0.00061 41.0 5.6 52 78-150 168-219 (416)
397 PRK13341 recombination factor 49.1 7.5 0.00016 49.4 1.1 21 78-98 49-69 (725)
398 PRK10590 ATP-dependent RNA hel 49.0 10 0.00022 45.7 2.1 25 72-98 31-55 (456)
399 PF12709 Kinetocho_Slk19: Cent 48.5 1.9E+02 0.004 26.8 9.5 18 574-591 45-62 (87)
400 PF02534 T4SS-DNA_transf: Type 48.3 11 0.00023 45.5 2.2 17 82-98 45-61 (469)
401 cd01127 TrwB Bacterial conjuga 48.3 7.6 0.00017 46.1 0.9 18 81-98 42-59 (410)
402 TIGR00348 hsdR type I site-spe 48.1 9.7 0.00021 48.2 1.8 30 69-99 247-281 (667)
403 KOG3859 Septins (P-loop GTPase 48.0 15 0.00032 40.8 2.9 46 65-110 25-79 (406)
404 PF05970 PIF1: PIF1-like helic 47.8 6.6 0.00014 45.8 0.3 34 61-98 6-39 (364)
405 PF12795 MscS_porin: Mechanose 47.8 4.1E+02 0.0088 29.0 23.1 164 534-700 37-212 (240)
406 TIGR01618 phage_P_loop phage n 47.7 7.7 0.00017 42.0 0.8 19 81-99 12-30 (220)
407 KOG2150 CCR4-NOT transcription 47.6 6.3E+02 0.014 31.2 18.8 168 612-902 4-176 (575)
408 TIGR01242 26Sp45 26S proteasom 47.5 7.5 0.00016 45.3 0.7 18 81-98 156-173 (364)
409 PRK00440 rfc replication facto 47.3 9.3 0.0002 43.1 1.4 21 78-98 35-55 (319)
410 PF09304 Cortex-I_coil: Cortex 47.3 2.7E+02 0.0058 26.8 14.8 8 577-584 15-22 (107)
411 KOG3990 Uncharacterized conser 47.2 98 0.0021 33.8 8.7 28 665-692 266-293 (305)
412 PRK04328 hypothetical protein; 47.0 12 0.00025 41.3 2.1 27 71-97 10-39 (249)
413 PF14282 FlxA: FlxA-like prote 47.0 83 0.0018 30.1 7.6 18 535-552 19-36 (106)
414 PRK15455 PrkA family serine pr 46.9 19 0.00042 44.3 3.9 67 50-121 75-163 (644)
415 TIGR02788 VirB11 P-type DNA tr 46.8 10 0.00022 43.2 1.6 28 70-98 134-161 (308)
416 cd01120 RecA-like_NTPases RecA 46.8 7.9 0.00017 38.3 0.6 15 84-98 2-16 (165)
417 KOG1103 Predicted coiled-coil 46.7 5E+02 0.011 29.8 22.7 43 660-702 239-281 (561)
418 KOG0727 26S proteasome regulat 46.7 7.9 0.00017 42.2 0.6 118 9-127 98-249 (408)
419 PF13476 AAA_23: AAA domain; P 46.5 7.8 0.00017 40.1 0.6 17 82-98 20-36 (202)
420 KOG2751 Beclin-like protein [S 46.3 5.8E+02 0.013 30.4 16.2 48 594-641 189-236 (447)
421 PF10211 Ax_dynein_light: Axon 46.2 3.2E+02 0.0069 29.0 12.5 97 537-633 86-187 (189)
422 PF06160 EzrA: Septation ring 46.2 6.8E+02 0.015 31.1 47.6 63 840-909 445-507 (560)
423 PF09755 DUF2046: Uncharacteri 46.1 5.1E+02 0.011 29.6 38.4 81 611-697 79-159 (310)
424 PRK04195 replication factor C 46.0 11 0.00024 45.7 1.8 30 69-98 26-56 (482)
425 PF15456 Uds1: Up-regulated Du 45.8 2.1E+02 0.0046 28.2 10.3 49 858-906 72-120 (124)
426 PF05729 NACHT: NACHT domain 45.8 8.9 0.00019 38.3 0.8 16 83-98 2-17 (166)
427 TIGR03819 heli_sec_ATPase heli 45.8 10 0.00023 43.8 1.5 29 69-98 167-195 (340)
428 PRK11331 5-methylcytosine-spec 45.8 9.3 0.0002 45.6 1.1 36 331-370 320-357 (459)
429 KOG0288 WD40 repeat protein Ti 45.7 5.8E+02 0.013 30.2 16.7 67 602-668 6-75 (459)
430 PF14282 FlxA: FlxA-like prote 45.5 85 0.0018 30.0 7.4 24 609-632 51-74 (106)
431 PF10212 TTKRSYEDQ: Predicted 45.5 6.6E+02 0.014 30.8 20.4 22 570-591 412-433 (518)
432 KOG3759 Uncharacterized RUN do 45.5 6.1E+02 0.013 30.4 16.7 70 545-614 99-193 (621)
433 PF07106 TBPIP: Tat binding pr 45.5 3.4E+02 0.0073 28.0 12.5 55 537-591 81-136 (169)
434 PF13815 Dzip-like_N: Iguana/D 45.4 1.1E+02 0.0023 29.8 8.2 54 844-897 64-117 (118)
435 PF13173 AAA_14: AAA domain 45.3 9.4 0.0002 37.2 0.9 16 83-98 4-19 (128)
436 PLN03025 replication factor C 45.1 11 0.00023 43.1 1.5 20 79-98 32-51 (319)
437 PF12761 End3: Actin cytoskele 45.1 1.6E+02 0.0034 31.4 9.8 22 606-627 157-178 (195)
438 TIGR02237 recomb_radB DNA repa 44.9 10 0.00022 40.1 1.2 25 74-98 2-29 (209)
439 KOG1103 Predicted coiled-coil 44.8 5.4E+02 0.012 29.6 17.2 23 743-765 258-280 (561)
440 TIGR00614 recQ_fam ATP-depende 44.7 13 0.00029 44.8 2.2 26 71-98 18-43 (470)
441 PRK05703 flhF flagellar biosyn 44.6 9.3 0.0002 45.6 0.9 17 82-98 222-238 (424)
442 cd01123 Rad51_DMC1_radA Rad51_ 44.4 12 0.00027 40.2 1.8 29 70-98 5-36 (235)
443 KOG4302 Microtubule-associated 44.0 7.8E+02 0.017 31.2 21.4 291 528-893 14-324 (660)
444 KOG0288 WD40 repeat protein Ti 43.8 4E+02 0.0087 31.5 13.4 29 966-998 390-419 (459)
445 TIGR02977 phageshock_pspA phag 43.7 4.5E+02 0.0097 28.4 16.8 137 729-931 29-171 (219)
446 PRK13342 recombination factor 43.7 13 0.00029 44.1 2.0 27 72-98 27-53 (413)
447 cd02021 GntK Gluconate kinase 43.7 9.8 0.00021 37.9 0.8 15 84-98 2-16 (150)
448 cd03274 ABC_SMC4_euk Eukaryoti 43.5 11 0.00023 40.6 1.0 16 83-98 27-42 (212)
449 KOG1265 Phospholipase C [Lipid 43.5 7.7E+02 0.017 32.1 16.5 42 579-620 1057-1100(1189)
450 PTZ00361 26 proteosome regulat 43.4 17 0.00038 43.4 2.9 42 83-124 219-274 (438)
451 PF06048 DUF927: Domain of unk 43.4 10 0.00022 42.8 0.9 27 71-98 184-210 (286)
452 PF10473 CENP-F_leu_zip: Leuci 43.3 3.7E+02 0.0079 27.2 19.9 21 607-627 85-105 (140)
453 PRK11634 ATP-dependent RNA hel 43.1 13 0.00027 46.8 1.7 25 72-98 36-60 (629)
454 KOG0579 Ste20-like serine/thre 43.1 7.9E+02 0.017 31.0 40.4 47 496-543 802-849 (1187)
455 PRK06995 flhF flagellar biosyn 42.8 9.8 0.00021 46.0 0.7 17 82-98 257-273 (484)
456 COG3074 Uncharacterized protei 42.8 2E+02 0.0044 25.3 8.2 51 381-436 20-70 (79)
457 PF05700 BCAS2: Breast carcino 42.7 2E+02 0.0043 31.2 10.6 29 600-628 187-215 (221)
458 PF12774 AAA_6: Hydrolytic ATP 42.6 14 0.0003 40.4 1.7 44 81-124 32-83 (231)
459 TIGR01010 BexC_CtrB_KpsE polys 42.6 6E+02 0.013 29.5 16.4 86 500-593 175-264 (362)
460 PF00063 Myosin_head: Myosin h 42.5 9 0.00019 48.7 0.3 37 62-98 66-102 (689)
461 KOG0163 Myosin class VI heavy 42.4 8.4E+02 0.018 31.2 18.9 20 79-98 142-161 (1259)
462 COG1126 GlnQ ABC-type polar am 42.4 10 0.00022 40.9 0.6 14 85-98 32-45 (240)
463 PRK06067 flagellar accessory p 42.3 16 0.00034 39.7 2.1 30 69-98 10-42 (234)
464 COG1660 Predicted P-loop-conta 42.2 20 0.00044 39.6 2.8 37 83-119 3-45 (286)
465 TIGR03158 cas3_cyano CRISPR-as 42.1 15 0.00033 42.7 2.1 27 72-98 5-31 (357)
466 PF00735 Septin: Septin; Inte 42.1 7.3 0.00016 43.8 -0.5 21 78-98 1-21 (281)
467 PRK06851 hypothetical protein; 42.0 18 0.00038 42.3 2.6 41 52-98 7-47 (367)
468 PRK13822 conjugal transfer cou 41.5 21 0.00045 44.9 3.2 18 81-98 224-241 (641)
469 PF06745 KaiC: KaiC; InterPro 41.5 16 0.00035 39.3 2.0 28 71-98 6-36 (226)
470 PRK07261 topology modulation p 41.5 12 0.00025 38.8 0.9 15 84-98 3-17 (171)
471 KOG0335 ATP-dependent RNA heli 41.4 11 0.00024 45.0 0.9 21 77-99 109-129 (482)
472 TIGR01359 UMP_CMP_kin_fam UMP- 41.3 12 0.00025 38.7 0.9 15 84-98 2-16 (183)
473 PRK00131 aroK shikimate kinase 41.2 11 0.00025 38.1 0.8 17 82-98 5-21 (175)
474 PRK00080 ruvB Holliday junctio 41.2 12 0.00026 42.9 1.0 17 82-98 52-68 (328)
475 PF10236 DAP3: Mitochondrial r 41.2 12 0.00027 42.6 1.2 22 77-98 19-40 (309)
476 cd07649 F-BAR_GAS7 The F-BAR ( 41.0 5.2E+02 0.011 28.3 16.7 98 535-643 100-199 (233)
477 KOG1850 Myosin-like coiled-coi 40.9 6E+02 0.013 29.0 41.0 79 867-963 292-372 (391)
478 COG0630 VirB11 Type IV secreto 40.6 11 0.00024 43.0 0.7 20 79-98 141-160 (312)
479 PHA02244 ATPase-like protein 40.5 14 0.0003 43.1 1.4 26 71-98 111-136 (383)
480 PF07058 Myosin_HC-like: Myosi 40.5 3.3E+02 0.0071 30.9 11.6 20 893-912 120-139 (351)
481 PF10412 TrwB_AAD_bind: Type I 40.4 11 0.00024 44.4 0.6 18 81-98 15-32 (386)
482 PRK13897 type IV secretion sys 40.3 24 0.00053 44.0 3.5 17 82-98 159-175 (606)
483 TIGR02680 conserved hypothetic 40.2 1.2E+03 0.026 32.4 42.0 15 84-98 27-41 (1353)
484 PF13779 DUF4175: Domain of un 40.1 5.6E+02 0.012 33.5 15.5 45 839-884 554-598 (820)
485 cd00464 SK Shikimate kinase (S 40.1 13 0.00028 37.0 1.0 16 83-98 1-16 (154)
486 PRK08118 topology modulation p 40.0 13 0.00027 38.4 0.9 15 84-98 4-18 (167)
487 PRK04537 ATP-dependent RNA hel 40.0 16 0.00034 45.5 1.9 25 72-98 39-63 (572)
488 COG2204 AtoC Response regulato 40.0 58 0.0013 39.2 6.5 106 78-213 161-267 (464)
489 cd01850 CDC_Septin CDC/Septin. 39.9 12 0.00025 42.0 0.7 21 78-98 1-21 (276)
490 KOG0018 Structural maintenance 39.9 1.1E+03 0.023 31.6 37.5 31 590-620 257-287 (1141)
491 KOG1962 B-cell receptor-associ 39.6 3.5E+02 0.0076 29.3 11.5 100 578-682 114-213 (216)
492 TIGR00635 ruvB Holliday juncti 39.6 13 0.00029 41.8 1.1 16 83-98 32-47 (305)
493 TIGR01313 therm_gnt_kin carboh 39.6 11 0.00024 38.2 0.4 15 84-98 1-15 (163)
494 KOG0946 ER-Golgi vesicle-tethe 39.3 9.7E+02 0.021 30.9 32.3 25 798-822 857-881 (970)
495 TIGR02030 BchI-ChlI magnesium 39.3 11 0.00023 43.7 0.2 42 48-98 1-42 (337)
496 PF09738 DUF2051: Double stran 39.2 3E+02 0.0066 31.4 11.7 94 504-620 79-172 (302)
497 PF08946 Osmo_CC: Osmosensory 39.1 56 0.0012 26.3 4.0 41 839-882 1-41 (46)
498 PRK11889 flhF flagellar biosyn 39.0 12 0.00026 44.0 0.6 17 82-98 242-258 (436)
499 TIGR01650 PD_CobS cobaltochela 39.0 17 0.00036 41.8 1.8 49 48-98 33-81 (327)
500 PRK00106 hypothetical protein; 39.0 8.5E+02 0.018 30.2 24.5 171 568-759 25-199 (535)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-125 Score=1115.43 Aligned_cols=822 Identities=41% Similarity=0.566 Sum_probs=717.0
Q ss_pred eCCCCcchhccCCceEEEEeCCCcceeeCc-eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCc
Q 001641 16 VRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK 94 (1039)
Q Consensus 16 vRP~~~~e~~~~~~~~v~v~~~~~~v~~~~-~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGK 94 (1039)
|||+...|..+||..|+.+.|+.|||.+++ .+|+||+||++.. .|.++|+.||.|+++.+|+|||+||+|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~~-~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDLE-SQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCch-HHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 699999999999999999999999999975 6899999998764 59999999999999999999999999999999999
Q ss_pred ccccccCCCCCCc-ccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCccccccccccCCCCccccCCCC
Q 001641 95 TYTMGTGLREGFQ-TGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRP 173 (1039)
Q Consensus 95 TyTm~G~~~~~~~-~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1039)
|||||+++..... .|+|||++.+||.+|..... ..|.|.|||+|||++.|+|||.|.. ...
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~-----------------~~~ 141 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR-----------------LKA 141 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh-----------------hhh
Confidence 9999998665444 49999999999999998644 7899999999999999999998543 123
Q ss_pred CceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeeeecccCCCCCCCCCCC
Q 001641 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDED 253 (1039)
Q Consensus 174 ~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~~~~~~~~~~ 253 (1039)
++.+++ +.|+|.+.|+|+++|.+..+++.+|..|...|++++|+||.+|||||+||||+++++.....
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~----------- 209 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK----------- 209 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence 578888 88999999999999999999999999999999999999999999999999999998655322
Q ss_pred CCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCchhhhhhccCCC
Q 001641 254 MDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGG 333 (1039)
Q Consensus 254 ~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkLTrLLqdsLGG 333 (1039)
...+++||||||||||||.++|+++|+|++||++||.||++|||||+||++.++ ++|||||||||||||||+|||
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG 284 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG 284 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence 225789999999999999999999999999999999999999999999999875 679999999999999999999
Q ss_pred CceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHH
Q 001641 334 NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGR 413 (1039)
Q Consensus 334 ns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN~d~~~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~er 413 (1039)
|+.|+||+||||++.|+.||++||+||+||++|+|||++|.|+...+|..|+.+|+.|+.+|+...++...+++..|..+
T Consensus 285 ns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e 364 (913)
T KOG0244|consen 285 NSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFE 364 (913)
T ss_pred CcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988666667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCC--------------------ccccccchhccccccccccchhhh
Q 001641 414 IAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGP--------------------VSFVKSDGLKRGFQSIDSSDYQMD 473 (1039)
Q Consensus 414 i~~Le~en~~L~~eL~e~r~rl~~~E~~~~~a~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~l~ 473 (1039)
+..++..++.+..++++.+..+.....+...+.... ....+...|.+.++.+.....++.
T Consensus 365 ~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~ 444 (913)
T KOG0244|consen 365 NVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIG 444 (913)
T ss_pred hhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccccccc
Confidence 999999999999999998888754433322211100 000011123333333322111111
Q ss_pred hhhc-CCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 474 EAVS-DGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQE 550 (1039)
Q Consensus 474 e~~~-~~~~~~~eee~~e~E~~~~q~~l~~El~eL~kqLe~kE~~~k~~~~--~d~~~~k~~ye~kl~eLEeei~~LqkE 550 (1039)
.... .+++.........++|...+.++..++.+++++|++||+.+++... .....++++|+.++..|+.++..++.|
T Consensus 445 ~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E 524 (913)
T KOG0244|consen 445 MNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE 524 (913)
T ss_pred ccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc
Confidence 1111 0111111222456788899999999999999999999999998874 346778999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 551 RDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (1039)
Q Consensus 551 rd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k 630 (1039)
++.|..++..... ...++.+.|.++|+.||.++..|++++.+|..|++.+.+.+....+|..||..||.++|+|++
T Consensus 525 ~~~l~~el~~~~~----~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~ 600 (913)
T KOG0244|consen 525 RSRLRNELNVFNR----LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR 600 (913)
T ss_pred cHHHHHHHHhhhH----HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998732 778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hccc
Q 001641 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARE-NSVN 709 (1039)
Q Consensus 631 ~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~-~~~~ 709 (1039)
+|++|+++|+.|+...+||++||+++.|+.++++.+++..+.+|..||+|+|+|++++++||++++..|+..... ....
T Consensus 601 ~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~~~~~ 680 (913)
T KOG0244|consen 601 VMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQVTLG 680 (913)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998776322 1111
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCcccccC
Q 001641 710 STGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSL 789 (1039)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l 789 (1039)
. ++ ........|+.+|++|++.+.+++.+|+++++.|+.+..++..++...
T Consensus 681 ~---~~----~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~---------------------- 731 (913)
T KOG0244|consen 681 D---NG----ASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG---------------------- 731 (913)
T ss_pred h---cC----chhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 1 11 345678999999999999999999999999999999999999998721
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 001641 790 SPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWE----- 864 (1039)
Q Consensus 790 ~~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~----- 864 (1039)
...|.+|+.+++..+++|.+|+++|..++++.+.+. +|+++.++.|||+.++|+|+..+..++....
T Consensus 732 -----~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~---~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~ 803 (913)
T KOG0244|consen 732 -----KKLLGSLEPVMELTSDQISSMQDLIITASKDERIKM---RWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGS 803 (913)
T ss_pred -----HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHHH---HHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 567899999999999999999999999988887655 9999999999999999999999999998885
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001641 865 --KDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASG 914 (1039)
Q Consensus 865 --~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 914 (1039)
....+.++.+++.+....++..+.+...+..+...+.+.+-.++++....
T Consensus 804 re~~~~~~~l~~kl~~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~~~~~ 855 (913)
T KOG0244|consen 804 REKGIKKWDLTQKLLDEQVNLRKDEVQALGVVPEHPVLLSGCKGGILKVWQM 855 (913)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44556677777777777778888999999999999999999999988764
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-89 Score=819.02 Aligned_cols=397 Identities=40% Similarity=0.630 Sum_probs=332.4
Q ss_pred CCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee--C------ceeEEeceEeCCCCCCCcccccccchhhHHHhh
Q 001641 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--G------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (1039)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~--~------~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl 77 (1039)
...+|+|+|||||++.+|....++..|++.+....|.+ + .+.|+||+||||.+ +|.+||+.+|.|+|..|+
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes-~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPES-QQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcch-hHHHHHHHHHHHHHHHHh
Confidence 34699999999999999998888888877765443433 1 46899999999976 499999999999999999
Q ss_pred cCCCccEEeeccCCCCcccccccCCC-----CCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCc
Q 001641 78 QGYNATVLAYGQTGSGKTYTMGTGLR-----EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (1039)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~G~~~-----~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 152 (1039)
.|||||||||||||+||||||.|+.. .+...|||||++.+||+.++.. ..+|+|+|||+|+|||+|+|||++.
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCc
Confidence 99999999999999999999998643 4678999999999999999884 4799999999999999999999986
Q ss_pred cccccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEE
Q 001641 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (1039)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti 232 (1039)
.... ....+.+.+++. +..||++|.|+.+++|+++.|++.+|.+|...|.|++|.||.+|||||+||+|
T Consensus 204 ~~~~--------~~~~~k~~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsI 272 (1041)
T KOG0243|consen 204 DTSD--------KKLRIKDDSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSI 272 (1041)
T ss_pred cccc--------cccccccCCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEE
Confidence 5321 111222333333 67899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCC
Q 001641 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (1039)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~ 312 (1039)
+|.-... + ....+-+.+|||+||||||||-..++|+.+.|.+|++.||+||++||+||+||.+..
T Consensus 273 tvhike~---------t--~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s---- 337 (1041)
T KOG0243|consen 273 TVHIKEN---------T--PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS---- 337 (1041)
T ss_pred EEEEecC---------C--CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC----
Confidence 9986431 1 112345778999999999999999999999999999999999999999999999864
Q ss_pred CCcccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccc-hHHHHHHHHHHHHH
Q 001641 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI-SSDMQKLRQQLKYL 391 (1039)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN~d~~-~~ei~~Lr~eI~~L 391 (1039)
+|||||+|||||||||||||.++|+|||||||+..+++||++||.||.||++|+|||.+|+-.. ...+..|..+|.+|
T Consensus 338 -~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerL 416 (1041)
T KOG0243|consen 338 -GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERL 416 (1041)
T ss_pred -CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999997543 55678899999999
Q ss_pred HHHHhhhh--CCC--ChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 392 QAELCARA--GGA--PSD-------EVQVLKGRIAWLEATNEDLCQELHEYR 432 (1039)
Q Consensus 392 q~eL~~~~--~~~--~~~-------e~q~L~eri~~Le~en~~L~~eL~e~r 432 (1039)
+..|.+.. .|+ +.+ +.+.+..++..++.+.+.+..+|....
T Consensus 417 K~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~ 468 (1041)
T KOG0243|consen 417 KRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLT 468 (1041)
T ss_pred HHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997542 332 222 333444444445444444444444333
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-92 Score=819.23 Aligned_cols=357 Identities=46% Similarity=0.687 Sum_probs=330.3
Q ss_pred CCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC---------ceeEEeceEeCCCCCCCcccccccchhhHHHh
Q 001641 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (1039)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~---------~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~v 76 (1039)
..++|+|+|||||+...+...++..++.+.+...++.+. +++|+||+||+++++ |++||..++.|+|++|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~st-Q~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDST-QDDVYQETVAPLVESV 81 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCC-HHHHHHHHhHHHHHHH
Confidence 357999999999999999999999999888877766652 368999999998766 8999999999999999
Q ss_pred hcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCccccc
Q 001641 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (1039)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~ 156 (1039)
++||||||||||||||||||||.|+ ++...|||||+|.+||..|+.......|.|+|||+|||||.|+|||++.+
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~--- 156 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN--- 156 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---
Confidence 9999999999999999999999997 47889999999999999999977677899999999999999999998754
Q ss_pred cccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEe
Q 001641 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (1039)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q 236 (1039)
.+.+.|++++..||||.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||||+|++
T Consensus 157 ---------------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~ 221 (574)
T KOG4280|consen 157 ---------------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIES 221 (574)
T ss_pred ---------------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEe
Confidence 24789999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcc
Q 001641 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (1039)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~v 316 (1039)
.... .+.......|+|||||||||||..+||+.|.|++|+.+||+||++||+||++|+++++ .||
T Consensus 222 ~~~~-----------~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~----~HI 286 (574)
T KOG4280|consen 222 SEKS-----------DGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK----THI 286 (574)
T ss_pred eccc-----------CCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc----CCC
Confidence 3221 1123456789999999999999999999999999999999999999999999999865 399
Q ss_pred cCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHh
Q 001641 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELC 396 (1039)
Q Consensus 317 PyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN~d~~~~ei~~Lr~eI~~Lq~eL~ 396 (1039)
||||||||+||||||||||+|+|||||||++++++||++||+||+||+.|+|+|++|.|+....+..|+.+|+.|+.+|.
T Consensus 287 PYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 287 PYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELD 366 (574)
T ss_pred CcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hh
Q 001641 397 AR 398 (1039)
Q Consensus 397 ~~ 398 (1039)
..
T Consensus 367 ~~ 368 (574)
T KOG4280|consen 367 PG 368 (574)
T ss_pred cc
Confidence 54
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2e-90 Score=812.01 Aligned_cols=390 Identities=40% Similarity=0.608 Sum_probs=336.2
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC-----ceeEEeceEeCCCCC------CCcccccccchhhHHH
Q 001641 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-----THSFTFDHVYGNGGS------PSSAMFGECVAPLVDG 75 (1039)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~-----~~~F~FD~VF~~~~s------~q~~vy~~~v~plV~~ 75 (1039)
..+|+|+||||||+.+|....|+.+|.+..+..+|... .+.|+||++|+..++ .|..||+.+..|+++.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 46899999999999999988776555555544444432 257999999985432 4789999999999999
Q ss_pred hhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhcc-ccceEEEEeehhhhhhhHHhhhcCCccc
Q 001641 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (1039)
Q Consensus 76 vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIYnE~v~DLL~~~~~ 154 (1039)
+|+|||+||||||||||||||||.| +.++.++|||||++++||.+|.... .+..|.|.|||+|||||.|+|||+...
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG-~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~- 160 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMG-FQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK- 160 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeec-cCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC-
Confidence 9999999999999999999999988 4466889999999999999998753 457899999999999999999998311
Q ss_pred cccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEE
Q 001641 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (1039)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v 234 (1039)
.+++|.+||+|--|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||||.+
T Consensus 161 ----------------~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvf 224 (1221)
T KOG0245|consen 161 ----------------SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVF 224 (1221)
T ss_pred ----------------CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEE
Confidence 2467999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhcc--CCC
Q 001641 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK--RRE 312 (1039)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~--~~~ 312 (1039)
.|..... ........+|+|+|||||||||+..||+.|+|+|||.+||+||++||.||+||++..+ .++
T Consensus 225 tQk~~~~----------~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~k 294 (1221)
T KOG0245|consen 225 TQKKHDQ----------DTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKK 294 (1221)
T ss_pred Eeeeccc----------cCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCC
Confidence 9964321 1112356789999999999999999999999999999999999999999999998654 234
Q ss_pred CCcccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHH
Q 001641 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQ 392 (1039)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN~d~~~~ei~~Lr~eI~~Lq 392 (1039)
..+||||||-||+||+++|||||+|+|||++||++.||+|||+|||||+|||+|+|+|+||.|+....|+.|++|+.+|+
T Consensus 295 s~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLk 374 (1221)
T KOG0245|consen 295 SDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLK 374 (1221)
T ss_pred CccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCC-----------ChHHHHHHHHHHHHHHHHHHHH
Q 001641 393 AELCARAGGA-----------PSDEVQVLKGRIAWLEATNEDL 424 (1039)
Q Consensus 393 ~eL~~~~~~~-----------~~~e~q~L~eri~~Le~en~~L 424 (1039)
..|.....+. +..++.++.++++.-+....+|
T Consensus 375 sll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael 417 (1221)
T KOG0245|consen 375 SLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAEL 417 (1221)
T ss_pred HHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHH
Confidence 9987654321 1345666666655444443333
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.8e-86 Score=744.95 Aligned_cols=339 Identities=42% Similarity=0.683 Sum_probs=313.0
Q ss_pred CCCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeCc----eeEEeceEeCCCCCCCcccccccchhhHHHhhcCC
Q 001641 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT----HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (1039)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~~----~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~ 80 (1039)
.+.|+|+|+||+||++..|...+......+.++...|.+++ .+|.||+||.|+++ |.+||..++.|+|++||.||
T Consensus 4 ~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnat-Qe~Vy~~~a~~Iv~dVL~GY 82 (607)
T KOG0240|consen 4 SAECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNAT-QEDVYEFAAKPIVDDVLLGY 82 (607)
T ss_pred CCCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCcc-HHHHHHHHHHHHHHHHhccc
Confidence 36799999999999999998888776666666566677765 89999999999876 89999999999999999999
Q ss_pred CccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCccccccccc
Q 001641 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~~ 160 (1039)
|+||||||||||||||||.|...+....|||||++++||++|.......+|.|.|||||||+|+|+|||+|..
T Consensus 83 NGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k------- 155 (607)
T KOG0240|consen 83 NGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEK------- 155 (607)
T ss_pred ceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCccc-------
Confidence 9999999999999999999977777778999999999999999998889999999999999999999998643
Q ss_pred cCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeeeec
Q 001641 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (1039)
Q Consensus 161 ~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~ 240 (1039)
.++.|++|.+.+++|.|++++.|.++++++.++..|..+|+++.|+||.+|||||+||+|+|.|...
T Consensus 156 ------------~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~- 222 (607)
T KOG0240|consen 156 ------------TNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENV- 222 (607)
T ss_pred ------------CCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccc-
Confidence 5789999999999999999999999999999999999999999999999999999999999999532
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 001641 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (1039)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRd 320 (1039)
.+...++|+|.||||||||+++++|+.|.-+.|+.+||+||.|||+||+||+++. ..||||||
T Consensus 223 -------------e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~----~shipYRD 285 (607)
T KOG0240|consen 223 -------------EDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGP----KSHIPYRD 285 (607)
T ss_pred -------------cchhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCC----CCCCcchh
Confidence 1345788999999999999999999999999999999999999999999999985 36999999
Q ss_pred CchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHH
Q 001641 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM 381 (1039)
Q Consensus 321 SkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN~d~~~~ei 381 (1039)
|||||||||||||||+|++|+|+||+..|..||.+||+|++||+.|+|.|.+|......++
T Consensus 286 SKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~ 346 (607)
T KOG0240|consen 286 SKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEW 346 (607)
T ss_pred hHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999986655443
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=8.9e-84 Score=778.20 Aligned_cols=354 Identities=41% Similarity=0.613 Sum_probs=305.1
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeCceeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEe
Q 001641 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (1039)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~a 86 (1039)
+++|+|||||||++..|. +.. ++.. ..+..+.+..+.|+||+||+++++ |++||+.++.|+|+++|+|||+||||
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~-iV~~-~s~dsl~I~~qtFtFD~VFdp~aT-QedVFe~vv~PLV~svLdGyNaTIFA 171 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEM-IVQK-MSNDSLTINGQTFTFDSIADPEST-QEDIFQLVGAPLVENCLAGFNSSVFA 171 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCe-eEEE-cCCCeEEEeCcEEeCCeeeCCCCC-HHHHHHHHHHHHHHHHhcCCcceeec
Confidence 579999999999998863 333 3332 234457778899999999999876 89999999999999999999999999
Q ss_pred eccCCCCcccccccCCC-------CCCcccchhHHHHHHHHHHHhc-----cccceEEEEeehhhhhhhHHhhhcCCccc
Q 001641 87 YGQTGSGKTYTMGTGLR-------EGFQTGLIPQVMNALFNKIETL-----RHQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (1039)
Q Consensus 87 YGqTGSGKTyTm~G~~~-------~~~~~Giipr~~~~LF~~i~~~-----~~~~~~~v~vS~~EIYnE~v~DLL~~~~~ 154 (1039)
||||||||||||+|+.. .+..+|||||++++||..|... .....|.|+|||+|||||.|||||++..
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~- 250 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ- 250 (1320)
T ss_pred CCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc-
Confidence 99999999999999643 2467899999999999999653 2346799999999999999999997532
Q ss_pred cccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEE
Q 001641 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (1039)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v 234 (1039)
..+.|++++.+|++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 251 ------------------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~V 312 (1320)
T PLN03188 251 ------------------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVV 312 (1320)
T ss_pred ------------------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEE
Confidence 35889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCC
Q 001641 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (1039)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~ 314 (1039)
++..... .+.......|+|+|||||||||.+++++.|.+++|+++||+||++||+||.+|+......+..
T Consensus 313 es~~k~~----------~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~ 382 (1320)
T PLN03188 313 ESRCKSV----------ADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQR 382 (1320)
T ss_pred EEeeccc----------CCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCC
Confidence 8743211 011233568999999999999999999999999999999999999999999999755444457
Q ss_pred cccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccc------hHHHHHHHHHH
Q 001641 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI------SSDMQKLRQQL 388 (1039)
Q Consensus 315 ~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN~d~~------~~ei~~Lr~eI 388 (1039)
||||||||||+||+|+|||||+|+|||||||+..++.||++||+||+||+.|+|+|++|.... ...|..|+.+|
T Consensus 383 HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL 462 (1320)
T PLN03188 383 HIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDEL 462 (1320)
T ss_pred cCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998642 22444555555
Q ss_pred HHHHHH
Q 001641 389 KYLQAE 394 (1039)
Q Consensus 389 ~~Lq~e 394 (1039)
..|+..
T Consensus 463 ~rLK~~ 468 (1320)
T PLN03188 463 QRVKAN 468 (1320)
T ss_pred HHHHHh
Confidence 555544
No 7
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.4e-81 Score=749.63 Aligned_cols=349 Identities=45% Similarity=0.685 Sum_probs=305.1
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC----------ceeEEeceEeCCCCCCCcccccccchhhHHHh
Q 001641 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (1039)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~----------~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~v 76 (1039)
...|.|+|||||+++.+...+. .|.....++..+... ...|.||+||+++++ |.+||+.++.|+|++|
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t-~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGD-RSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEEST-QEDVYERTTKPLLLSV 82 (675)
T ss_pred cceeEEEEEeCCCCccccccCC-ccceEecCCceeEeeccccccccccccceeeeeecCCCCC-HHHHHHhccHHHHHHH
Confidence 4689999999999998533332 222222222221110 378999999999887 8999999999999999
Q ss_pred hcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCccccc
Q 001641 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (1039)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~ 156 (1039)
+.||||||||||||||||||||.|. ..+|||||.++.+||+.|.... ...|.|.|||+|||||.|+|||++..
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~---~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~--- 155 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGS---EDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG--- 155 (675)
T ss_pred hcCcccceeeecCCCCCCceEEecc---CCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC---
Confidence 9999999999999999999999884 4569999999999999999865 78999999999999999999998743
Q ss_pred cccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEe
Q 001641 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (1039)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q 236 (1039)
+++.|+||+.+|++|+||++..|.|.++++.+|..|..+|+++.|++|..|||||+||+|+|.+
T Consensus 156 ----------------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s 219 (675)
T KOG0242|consen 156 ----------------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVES 219 (675)
T ss_pred ----------------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEe
Confidence 4599999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcc
Q 001641 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (1039)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~v 316 (1039)
..+.. + . ..|+|+|||||||||+.+|++.|.|++||.+||+||++||+||++|+++.. ..||
T Consensus 220 ~~~~~-----------~---~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~---~~hi 281 (675)
T KOG0242|consen 220 RGREA-----------S---S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKR---PRHI 281 (675)
T ss_pred ccccc-----------c---c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccc---cCCC
Confidence 54311 0 1 668999999999999999999999999999999999999999999998854 2399
Q ss_pred cCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHH-HHHHHHHHHHHHHHH
Q 001641 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSD-MQKLRQQLKYLQAEL 395 (1039)
Q Consensus 317 PyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN~d~~~~e-i~~Lr~eI~~Lq~eL 395 (1039)
|||||||||||||+|||||+|+|||||+|+..+++||.+||+||+||++|++++.+|.-....- +..++.++..|+.++
T Consensus 282 pYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~ 361 (675)
T KOG0242|consen 282 PYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAEL 361 (675)
T ss_pred CccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997665444 344457888888888
Q ss_pred hhh
Q 001641 396 CAR 398 (1039)
Q Consensus 396 ~~~ 398 (1039)
...
T Consensus 362 ~~~ 364 (675)
T KOG0242|consen 362 ERL 364 (675)
T ss_pred Hhh
Confidence 654
No 8
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-79 Score=705.61 Aligned_cols=362 Identities=42% Similarity=0.633 Sum_probs=321.3
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-----------CceeEEeceEeCCCC------CCCcccccccc
Q 001641 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNGG------SPSSAMFGECV 69 (1039)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~-----------~~~~F~FD~VF~~~~------s~q~~vy~~~v 69 (1039)
+..|+|+|||||++.+|........|.|..+...+.+ +.++|.||++|.+.+ ..|+.||+.+.
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 5689999999999999987766655666555443332 347999999998643 24899999999
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhcc-ccceEEEEeehhhhhhhHHhhh
Q 001641 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDL 148 (1039)
Q Consensus 70 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIYnE~v~DL 148 (1039)
..+|+++|+|||+||||||||||||||||.|. ..++|||||++..||..|.... +...|.|.|||+|||||++|||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt---~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGT---AEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeecc---CCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 99999999999999999999999999999884 5579999999999999998653 4578999999999999999999
Q ss_pred cCCccccccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceE
Q 001641 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHA 228 (1039)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~ 228 (1039)
|+|... +..+.+++++-.|.||.||++..|+|++++-.+|..|+++|++++|+||..|||||+
T Consensus 160 LdPk~s-----------------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHa 222 (1714)
T KOG0241|consen 160 LDPKGS-----------------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHA 222 (1714)
T ss_pred hCCCCC-----------------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccce
Confidence 998652 357899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhc
Q 001641 229 IFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (1039)
Q Consensus 229 Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~ 308 (1039)
||.|.|.|.-. ++.++. .-...|+|.|||||||||+.+||+.|.|++||.+||+||.+||.||++|++.+
T Consensus 223 VFslvvtQ~l~----D~ktg~------SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 223 VFSLVVTQTLY----DLKTGH------SGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred eEEEEEeeEEe----ccccCc------chhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 99999998532 122221 12357899999999999999999999999999999999999999999999865
Q ss_pred cC-CCCCcccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHH
Q 001641 309 KR-REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQ 387 (1039)
Q Consensus 309 ~~-~~~~~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN~d~~~~ei~~Lr~e 387 (1039)
.. .++.+||||||-||+||+|+|||||+|+||+||||+.+||+|||+|||||.||++|+|..+||.|+....+..++++
T Consensus 293 n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReE 372 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREE 372 (1714)
T ss_pred cCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHH
Confidence 43 24679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 001641 388 LKYLQAELCAR 398 (1039)
Q Consensus 388 I~~Lq~eL~~~ 398 (1039)
++.|+..|...
T Consensus 373 ve~lr~qL~~a 383 (1714)
T KOG0241|consen 373 VEKLREQLEQA 383 (1714)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=9e-80 Score=699.00 Aligned_cols=325 Identities=42% Similarity=0.604 Sum_probs=289.4
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC--ceeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEe
Q 001641 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~--~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~a 86 (1039)
+|+|+|||||+...|...+...|+.+..+...+..+ .+.|.||+||+++++ |++||+.++.|+|+++|+|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~p~v~~~~~G~n~ti~a 80 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTN-QEDVFQSVGKPLVEDCLSGYNGSIFA 80 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCC-HHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 799999999999999877777788776554444333 379999999999876 89999999999999999999999999
Q ss_pred eccCCCCcccccccCCCC-----CCcccchhHHHHHHHHHHHhc----cccceEEEEeehhhhhhhHHhhhcCCcccccc
Q 001641 87 YGQTGSGKTYTMGTGLRE-----GFQTGLIPQVMNALFNKIETL----RHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (1039)
Q Consensus 87 YGqTGSGKTyTm~G~~~~-----~~~~Giipr~~~~LF~~i~~~----~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~ 157 (1039)
||||||||||||+|+... ...+|||||++++||..+... .....|.|+|||+|||||.|||||++..
T Consensus 81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~---- 156 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS---- 156 (337)
T ss_pred eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC----
Confidence 999999999999997653 247899999999999998754 2346899999999999999999997532
Q ss_pred ccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEee
Q 001641 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (1039)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (1039)
..+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 157 ---------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 221 (337)
T cd01373 157 ---------------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESW 221 (337)
T ss_pred ---------------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEe
Confidence 35899999999999999999999999999999999999999999999999999999999999875
Q ss_pred eecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCccc
Q 001641 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (1039)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vP 317 (1039)
.... .......|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|++.... ...|||
T Consensus 222 ~~~~------------~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~-~~~~ip 288 (337)
T cd01373 222 EKKA------------SSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG-KQRHVP 288 (337)
T ss_pred ecCC------------CCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC-CCCccC
Confidence 3211 112456799999999999999999999999999999999999999999999875432 257999
Q ss_pred CCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001641 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1039)
Q Consensus 318 yRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~I 366 (1039)
|||||||+||+|+|||||+|+|||||||+..+++||++||+||.||+.|
T Consensus 289 yR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 289 YRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=3.3e-79 Score=694.65 Aligned_cols=322 Identities=47% Similarity=0.695 Sum_probs=292.0
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCccee----------------eCceeEEeceEeCCCCCCCcccccccchhh
Q 001641 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ----------------IGTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~----------------~~~~~F~FD~VF~~~~s~q~~vy~~~v~pl 72 (1039)
+|+|+|||||+.+.|...+...|+.+..+...+. ...+.|+||+||+++++ |++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~-q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETST-QEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCC-HHHHHHHHHHHH
Confidence 5999999999999998888888988765432111 12478999999999876 899999999999
Q ss_pred HHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCc
Q 001641 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (1039)
Q Consensus 73 V~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 152 (1039)
|+++++|||+||||||||||||||||+|+. .++|||||++++||+.++.......|.|+|||+|||||.|+|||++.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD---SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC---CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999864 56899999999999999987777899999999999999999999763
Q ss_pred cccccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEE
Q 001641 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (1039)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti 232 (1039)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|
T Consensus 157 -------------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i 217 (338)
T cd01370 157 -------------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQI 217 (338)
T ss_pred -------------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEE
Confidence 2468999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCC
Q 001641 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (1039)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~ 312 (1039)
+|.+.... .+.......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+...+ .
T Consensus 218 ~i~~~~~~-----------~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~ 284 (338)
T cd01370 218 TVRQKDRT-----------ASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--K 284 (338)
T ss_pred EEEEEecC-----------CCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--C
Confidence 99985432 1112456789999999999999999999999999999999999999999999998753 3
Q ss_pred CCcccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001641 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1039)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~I 366 (1039)
..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 285 ~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 469999999999999999999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.4e-77 Score=679.53 Aligned_cols=326 Identities=36% Similarity=0.591 Sum_probs=287.1
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-----------------CceeEEeceEeCCCCCCCcccccccchh
Q 001641 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~-----------------~~~~F~FD~VF~~~~s~q~~vy~~~v~p 71 (1039)
+|+|+|||||+.+.|...+...|+.+..+. .+.+ ..+.|.||+||+++++ |++||+.++.|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~t-q~~vy~~~~~p 79 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTT-QKEFFEGTALP 79 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCCC-HHHHHHHHHHH
Confidence 799999999999999877777788765433 2322 2468999999999876 89999999999
Q ss_pred hHHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCC
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 151 (1039)
+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.. |.|.|||+|||||.|||||++
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP---GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCC
Confidence 9999999999999999999999999999964 5799999999999999865 999999999999999999987
Q ss_pred ccccccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEE
Q 001641 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231 (1039)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ift 231 (1039)
.... ...+.++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+
T Consensus 151 ~~~~-------------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~ 217 (345)
T cd01368 151 SPSS-------------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFT 217 (345)
T ss_pred cccc-------------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEE
Confidence 5421 012357999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCC
Q 001641 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRR 311 (1039)
Q Consensus 232 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~ 311 (1039)
|+|.+...... +. ..........|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+......
T Consensus 218 i~v~~~~~~~~-----~~-~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~ 291 (345)
T cd01368 218 IKLVQAPGDSD-----GD-VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG 291 (345)
T ss_pred EEEEEeccCcc-----cc-cccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 99997543211 00 1112345678999999999999999999999999999999999999999999999865433
Q ss_pred -CCCcccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001641 312 -EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1039)
Q Consensus 312 -~~~~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar 364 (1039)
...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 292 ~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 292 STNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=8.2e-77 Score=680.36 Aligned_cols=336 Identities=45% Similarity=0.672 Sum_probs=298.8
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceee---------CceeEEeceEeCCC-------CCCCcccccccchh
Q 001641 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNG-------GSPSSAMFGECVAP 71 (1039)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~---------~~~~F~FD~VF~~~-------~s~q~~vy~~~v~p 71 (1039)
.+|+|+|||||+...|...+...|+.+.+....+.. ..+.|+||+||++. ++ |++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~t-q~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYAS-QEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCC-HHHHHHHHHHH
Confidence 479999999999999988888888877663333322 23689999999886 55 89999999999
Q ss_pred hHHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccc-cceEEEEeehhhhhhhHHhhhcC
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLD 150 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIYnE~v~DLL~ 150 (1039)
+|+++++|||+||||||||||||||||+|+.. .+|||||++++||+.+..... ...|.|+|||+|||||.|||||+
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 156 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLN 156 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCC
Confidence 99999999999999999999999999999644 689999999999999987654 57899999999999999999998
Q ss_pred CccccccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEE
Q 001641 151 SVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (1039)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~If 230 (1039)
+.. .....+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||
T Consensus 157 ~~~----------------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~ 220 (356)
T cd01365 157 PKK----------------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVF 220 (356)
T ss_pred CCc----------------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEE
Confidence 643 1234689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccC
Q 001641 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKR 310 (1039)
Q Consensus 231 ti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~ 310 (1039)
+|+|.+...... ........|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.....
T Consensus 221 ~l~v~~~~~~~~----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~ 290 (356)
T cd01365 221 TIVLTQKKLDKE----------TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSA 290 (356)
T ss_pred EEEEEEEecccC----------CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 999998543210 1134567899999999999999999999999999999999999999999999986532
Q ss_pred ---CCCCcccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 001641 311 ---REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (1039)
Q Consensus 311 ---~~~~~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN 373 (1039)
+...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|+|++|
T Consensus 291 ~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 291 KSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 245799999999999999999999999999999999999999999999999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.2e-76 Score=678.76 Aligned_cols=333 Identities=44% Similarity=0.694 Sum_probs=301.4
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceee--------CceeEEeceEeCCCCCCCcccccccchhhHHHhhcC
Q 001641 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (1039)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~--------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G 79 (1039)
++|+|+|||||+...|...++..++.+...+.+|.+ ..+.|+||+||+++++ |++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~-q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEAD-QIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCC-HHHHHHHHHHHHHHHHhCC
Confidence 589999999999999988888888888777666655 3478999999999876 8999999999999999999
Q ss_pred CCccEEeeccCCCCcccccccCCCC--------CCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCC
Q 001641 80 YNATVLAYGQTGSGKTYTMGTGLRE--------GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (1039)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm~G~~~~--------~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 151 (1039)
||+||||||||||||||||+|+... ...+|||||++.+||..+... ...|.|+|||+|||||.|||||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997654 456899999999999999874 678999999999999999999986
Q ss_pred ccccccccccCCCCccccCCCCCceeEeC--CCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEE
Q 001641 152 VSVSKSVTANGHAGKVSISGRPPIQIRES--SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (1039)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~ire~--~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~I 229 (1039)
.. ....++.++++ +.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+|
T Consensus 159 ~~----------------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i 222 (352)
T cd01364 159 ES----------------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSI 222 (352)
T ss_pred cc----------------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceE
Confidence 43 12457899999 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhcc
Q 001641 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK 309 (1039)
Q Consensus 230 fti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~ 309 (1039)
|+|+|.+..... ........|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+...
T Consensus 223 ~~i~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~- 290 (352)
T cd01364 223 FSITIHIKETTI-----------SGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS- 290 (352)
T ss_pred EEEEEEEeccCC-----------CCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-
Confidence 999999853210 01223467999999999999999999999999999999999999999999998754
Q ss_pred CCCCCcccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccc
Q 001641 310 RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (1039)
Q Consensus 310 ~~~~~~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN~d 375 (1039)
.|||||+|+||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|+|.+|.+
T Consensus 291 ----~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 291 ----PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred ----CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 49999999999999999999999999999999999999999999999999999999999974
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.3e-76 Score=674.00 Aligned_cols=337 Identities=64% Similarity=0.967 Sum_probs=305.5
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC-ceeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEe
Q 001641 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (1039)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~-~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~a 86 (1039)
++|+|+|||||+...|...++..|+.+.++++++.++ .+.|+||+||+++++ |++||+.++.|+|+.+++|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTS-QEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCC-HHHHHHHHHHHHHHHHhCCCccceee
Confidence 5899999999999999988999999999999999887 689999999999876 89999999999999999999999999
Q ss_pred eccCCCCcccccccCCCC---CCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCccccccccccCC
Q 001641 87 YGQTGSGKTYTMGTGLRE---GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (1039)
Q Consensus 87 YGqTGSGKTyTm~G~~~~---~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~ 163 (1039)
||||||||||||+|+... ...+|||||++++||+.++......+|.|.|||+|||||.|||||.+..
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 149 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST---------- 149 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc----------
Confidence 999999999999997642 5789999999999999999877668999999999999999999997643
Q ss_pred CCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeeeecccC
Q 001641 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (1039)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~ 243 (1039)
...+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.......
T Consensus 150 ------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~ 223 (341)
T cd01372 150 ------SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223 (341)
T ss_pred ------cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcc
Confidence 12357899999999999999999999999999999999999999999999999999999999999986542111
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCch
Q 001641 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (1039)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkL 323 (1039)
. ....+.......|+|+||||||||+.+++++.|.+++|+.+||+||++|++||.+|+.+.+ +..|||||||+|
T Consensus 224 ~----~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~L 297 (341)
T cd01372 224 A----PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKL 297 (341)
T ss_pred c----cccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHH
Confidence 0 0111233457889999999999999999999999999999999999999999999997653 356999999999
Q ss_pred hhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhccc
Q 001641 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (1039)
Q Consensus 324 TrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~Ik 367 (1039)
|+||+|+|||||+|+||+||||+..+++||++||+||+||++||
T Consensus 298 T~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 298 TRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999996
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=5.6e-75 Score=659.46 Aligned_cols=323 Identities=48% Similarity=0.712 Sum_probs=294.0
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC---------ceeEEeceEeCCCCCCCcccccccchhhHHHhhcC
Q 001641 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~---------~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G 79 (1039)
+|+|+|||||+.+.|...++..++.+.+++.+|.+. .+.|+||+||+++++ |++||+.++.|+|+++++|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNST-QEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCcc-HHHHHHHHHHHHHHHHhCC
Confidence 799999999999999888888888887777666552 367999999999876 8999999999999999999
Q ss_pred CCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCcccccccc
Q 001641 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (1039)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~ 159 (1039)
||+||||||||||||||||+|+......+|||||++++||..+.... ...|.|.|||+|||||.|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~------ 153 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE-NVQFLVRVSYLEIYNEEVRDLLGKDQ------ 153 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc-CccEEEEEEEEEeeCCeeeeCCCCCC------
Confidence 99999999999999999999987767789999999999999998754 37899999999999999999997532
Q ss_pred ccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeeee
Q 001641 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (1039)
Q Consensus 160 ~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~ 239 (1039)
..++.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|++...
T Consensus 154 ------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 154 ------------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred ------------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 23688999999999999999999999999999999999999999999999999999999999997543
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCC
Q 001641 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (1039)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyR 319 (1039)
.. ........|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+|++++ ..|||||
T Consensus 222 ~~-----------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~----~~~ipyR 286 (333)
T cd01371 222 GE-----------DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK----STHIPYR 286 (333)
T ss_pred cC-----------CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC----CCcCCCc
Confidence 11 11234668999999999999999999999999999999999999999999998754 3599999
Q ss_pred CCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001641 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1039)
Q Consensus 320 dSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~I 366 (1039)
|||||+||+|+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus 287 ~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 287 DSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999987
No 16
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=6.8e-75 Score=655.51 Aligned_cols=307 Identities=42% Similarity=0.623 Sum_probs=277.7
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-------------CceeEEeceEeCCCCCCCcccccccchhhHHH
Q 001641 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~-------------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~ 75 (1039)
+|+|+|||||+.+.|...+...++.+.++ .++.+ ..+.|+||+||+++++ |++||+.++.|+|+.
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vf~~~~~plv~~ 79 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVT-NEEVYRSTVKPLIPH 79 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCC-HHHHHHHHHHHHHHH
Confidence 79999999999999987666666665543 22322 1478999999999876 899999999999999
Q ss_pred hhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCcccc
Q 001641 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (1039)
Q Consensus 76 vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~ 155 (1039)
+++|||+||||||||||||||||+|+. .++|||||++++||+.++... ..|.|+|||+|||||.|+|||++.
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--- 151 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDE---NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDR--- 151 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcC---CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCc---
Confidence 999999999999999999999999864 568999999999999998754 689999999999999999999751
Q ss_pred ccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEE
Q 001641 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (1039)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~ 235 (1039)
+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.
T Consensus 152 -----------------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~ 214 (322)
T cd01367 152 -----------------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILK 214 (322)
T ss_pred -----------------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEE
Confidence 368999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccC-CCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCC
Q 001641 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (1039)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~-a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~ 314 (1039)
+... ....|+|+|||||||||...++ ..|.+++|+.+||+||++|++||.+|+.+. .
T Consensus 215 ~~~~-----------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-----~ 272 (322)
T cd01367 215 NKKL-----------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-----A 272 (322)
T ss_pred EecC-----------------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-----C
Confidence 7421 3467999999999999998765 578999999999999999999999998764 4
Q ss_pred cccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001641 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1039)
Q Consensus 315 ~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar 364 (1039)
||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|++
T Consensus 273 ~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 273 HVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred cCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999985
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.3e-74 Score=655.36 Aligned_cols=320 Identities=44% Similarity=0.710 Sum_probs=294.3
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC----ceeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCcc
Q 001641 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (1039)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~----~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~t 83 (1039)
.+|+|+|||||+...|...+...|+.+.++ .+|.+. .+.|.||+||+++++ |++||+.++.|+|+.+++|||+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNTT-QEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCCC-HHHHHHHHHHHHHHHHHcCccce
Confidence 589999999999999977777888887655 456554 579999999999876 89999999999999999999999
Q ss_pred EEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCccccccccccCC
Q 001641 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~ 163 (1039)
|||||+|||||||||+|+......+|||||++++||+.+.......+|.|+|||+|||||.|+|||++.
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------- 148 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS----------- 148 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc-----------
Confidence 999999999999999998776678999999999999999987777889999999999999999999763
Q ss_pred CCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeeeecccC
Q 001641 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (1039)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~ 243 (1039)
...+.+++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 --------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~--- 217 (325)
T cd01369 149 --------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE--- 217 (325)
T ss_pred --------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC---
Confidence 246889999999999999999999999999999999999999999999999999999999999875321
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCch
Q 001641 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (1039)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkL 323 (1039)
......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.+++ .|||||||+|
T Consensus 218 -----------~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~----~~vpyR~S~L 282 (325)
T cd01369 218 -----------TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS----THIPYRDSKL 282 (325)
T ss_pred -----------CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC----CcCCCccCHH
Confidence 1235789999999999999999999999999999999999999999999997642 5999999999
Q ss_pred hhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001641 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1039)
Q Consensus 324 TrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~I 366 (1039)
|+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 283 T~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 283 TRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.9e-73 Score=643.29 Aligned_cols=308 Identities=39% Similarity=0.620 Sum_probs=277.5
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCc----ceee-------CceeEEeceEeCCCCCCCcccccccchhhHHHhh
Q 001641 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP----QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~----~v~~-------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl 77 (1039)
+|+|+|||||+.+.|. +...|+.+...++ .+.+ ..+.|.||+||+++++ |++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECT-QEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCC-HHHHHHHHHHHHHHHHh
Confidence 5899999999998883 3456776654422 3333 2368999999999865 89999999999999999
Q ss_pred cCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCcccccc
Q 001641 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (1039)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~ 157 (1039)
+|||+||||||||||||||||+|+. ..+|||||++++||+.++.. ...|.|+|||+|||||.|+|||++.
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~---~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~----- 147 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDP---NEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPA----- 147 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCc---CccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCC-----
Confidence 9999999999999999999999964 36899999999999988763 4689999999999999999999763
Q ss_pred ccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEee
Q 001641 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (1039)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (1039)
...+.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 148 --------------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 213 (319)
T cd01376 148 --------------KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP 213 (319)
T ss_pred --------------CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEE
Confidence 235889999999999999999999999999999999999999999999999999999999999874
Q ss_pred eecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCccc
Q 001641 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (1039)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vP 317 (1039)
.. .....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+.+. .|||
T Consensus 214 ~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ip 272 (319)
T cd01376 214 AS----------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIP 272 (319)
T ss_pred CC----------------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCC
Confidence 21 12568999999999999999999999999999999999999999999998753 5999
Q ss_pred CCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001641 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1039)
Q Consensus 318 yRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar 364 (1039)
||||+||+||+|+|||||+|+||+||||+..+++||++||+||+|||
T Consensus 273 yr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 273 YRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999986
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4.2e-73 Score=641.60 Aligned_cols=317 Identities=41% Similarity=0.676 Sum_probs=284.2
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC----ceeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccE
Q 001641 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATV 84 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~----~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI 84 (1039)
+|+|+|||||+...|. .+...++.+..+ ..+.+. .+.|.||+||+++++ |++||+.++.|+|+++++|||+||
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~vf~~~~~-q~~vy~~~~~p~v~~~l~G~n~~i 77 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRVFGGEST-NREVYERIAKPVVRSALEGYNGTI 77 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeEECCCCC-HHHHHHHHHHHHHHHHHCCCceeE
Confidence 6999999999999886 334455666555 444442 589999999999876 899999999999999999999999
Q ss_pred EeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCccccccccccCCC
Q 001641 85 LAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHA 164 (1039)
Q Consensus 85 ~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~~ 164 (1039)
||||||||||||||+|+. ..+|||||++++||..+.... ...|.|+|||+|||||.|||||++..
T Consensus 78 ~ayG~tgSGKT~T~~G~~---~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~----------- 142 (321)
T cd01374 78 FAYGQTSSGKTFTMSGDE---QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP----------- 142 (321)
T ss_pred EeecCCCCCCceeccCCC---CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC-----------
Confidence 999999999999999864 568999999999999998754 67899999999999999999997642
Q ss_pred CccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeeeecccCC
Q 001641 165 GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244 (1039)
Q Consensus 165 ~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~ 244 (1039)
.++.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.....
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--- 211 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--- 211 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC---
Confidence 468999999999999999999999999999999999999999999999999999999999999854211
Q ss_pred CCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCchh
Q 001641 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLT 324 (1039)
Q Consensus 245 ~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkLT 324 (1039)
+.......|+|+|||||||||..+++ .|.+++|+.+||+||++|++||.+|+.+.+ ..||||||||||
T Consensus 212 --------~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT 279 (321)
T cd01374 212 --------SESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLT 279 (321)
T ss_pred --------CCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHH
Confidence 12245678999999999999999998 899999999999999999999999998752 359999999999
Q ss_pred hhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001641 325 RLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1039)
Q Consensus 325 rLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~I 366 (1039)
+||+|+|||||+|+|||||||...+++||++||+||+||++|
T Consensus 280 ~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 280 RILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.3e-73 Score=643.96 Aligned_cols=319 Identities=39% Similarity=0.590 Sum_probs=280.3
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceee---------------CceeEEeceEeCCCCCCCcccccccchhhH
Q 001641 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~---------------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV 73 (1039)
+|+|+||+||+...+. .++.+.+.+.++.+ ..+.|+||+||++ ++ |++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~-q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-AS-QEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CC-HHHHHHHHHHHHH
Confidence 5999999999987442 12333333222211 2357999999998 55 8999999999999
Q ss_pred HHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCcc
Q 001641 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (1039)
Q Consensus 74 ~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 153 (1039)
+++++|||+||||||||||||||||+|+..+...+|||||++++||+.++.. ....|.|+|||+|||||.|||||++..
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCc
Confidence 9999999999999999999999999998766678999999999999999874 467899999999999999999998753
Q ss_pred ccccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEE
Q 001641 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (1039)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~ 233 (1039)
.. ....+.+.|++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+
T Consensus 153 ~~-------------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~ 219 (334)
T cd01375 153 EA-------------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIH 219 (334)
T ss_pred cc-------------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEE
Confidence 21 12346789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCC
Q 001641 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (1039)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~ 313 (1039)
|.+.... +.+.....|+|+|||||||||..++++.|..++|+.+||+||++|++||.+|+.+. .
T Consensus 220 v~~~~~~------------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~----~ 283 (334)
T cd01375 220 LESRSRE------------AGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA----R 283 (334)
T ss_pred EEEEecC------------CCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC----C
Confidence 9985421 11235678999999999999999999999999999999999999999999999764 3
Q ss_pred CcccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001641 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1039)
Q Consensus 314 ~~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar 364 (1039)
.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus 284 ~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 284 THVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999999999984
No 21
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.9e-72 Score=672.22 Aligned_cols=326 Identities=40% Similarity=0.629 Sum_probs=288.0
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-----C----ceeEEeceEeCCCCCCCcccccccchhhHHHhh
Q 001641 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----G----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (1039)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~-----~----~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl 77 (1039)
.|+|+|+|||||+.+.+....+...+ ..++...+.+ + .+.|.||+||+|.++ |++||.. +.|+|.+||
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~s-Q~~VF~e-~~~lv~S~l 389 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVI-DTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLAS-QDDVFEE-VSPLVQSAL 389 (670)
T ss_pred hcCceEEEEecCCCcccccccccccc-ccCCcceeEeecCCCCCCCccccceeeeecCCccc-HHHHHHH-HHHHHHHHh
Confidence 37999999999999988654322222 2222121222 1 135999999999887 8999998 899999999
Q ss_pred cCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCcccccc
Q 001641 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (1039)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~ 157 (1039)
+|||+||||||||||||||||.|+ .+..+|||||++.+||..+......+.|.+.+||+|||||.|+|||++.+
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~---- 463 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES---- 463 (670)
T ss_pred cCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc----
Confidence 999999999999999999999886 56679999999999999999988899999999999999999999997642
Q ss_pred ccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEee
Q 001641 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (1039)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (1039)
....+.|+.++++.++|.|++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|...
T Consensus 464 -------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~ 530 (670)
T KOG0239|consen 464 -------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI 530 (670)
T ss_pred -------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc
Confidence 1246889999999999999999999999999999999999999999999999999999999999753
Q ss_pred eecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCccc
Q 001641 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (1039)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vP 317 (1039)
. ........+.|+|||||||||+++++++|.|++|+.+||+||++||+||.||+.. ..|||
T Consensus 531 ~--------------~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k-----~~HiP 591 (670)
T KOG0239|consen 531 N--------------ELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK-----RSHIP 591 (670)
T ss_pred c--------------cCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc-----CCCCc
Confidence 1 1234567789999999999999999999999999999999999999999999874 45999
Q ss_pred CCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 001641 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (1039)
Q Consensus 318 yRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN 373 (1039)
|||||||+||||+|||+++|+|+++|||...++.||+++|+||.|++.+...|..-
T Consensus 592 yRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 592 YRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred ccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 99999999999999999999999999999999999999999999999999887653
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=4e-71 Score=627.93 Aligned_cols=321 Identities=42% Similarity=0.670 Sum_probs=288.0
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCC-cceeeC-----ceeEEeceEeCCCCCCCcccccccchhhHHHhhcCC
Q 001641 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGN-PQVQIG-----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (1039)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~-~~v~~~-----~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~ 80 (1039)
.++|+|+|||||+...|. .....++.+..++ .++.+. .+.|+||+||+++++ |++||+. +.|+|+++++||
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~-q~~v~~~-v~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDAS-QEDVFEE-VSPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCC-HHHHHHH-HHHHHHHHhCCC
Confidence 368999999999998876 3344566666653 444442 368999999998865 8999997 699999999999
Q ss_pred CccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccc-cceEEEEeehhhhhhhHHhhhcCCcccccccc
Q 001641 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~ 159 (1039)
|+||||||+|||||||||+|+. ..+||||+++++||..+..... ...|.|.|||+|||||.|+|||++..
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~------ 148 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPP---ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP------ 148 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCC---CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc------
Confidence 9999999999999999999964 6689999999999999988754 67899999999999999999998643
Q ss_pred ccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeeee
Q 001641 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (1039)
Q Consensus 160 ~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~ 239 (1039)
...+++.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 149 ----------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~ 218 (329)
T cd01366 149 ----------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNL 218 (329)
T ss_pred ----------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcC
Confidence 1245799999999999999999999999999999999999999999999999999999999999987532
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCC
Q 001641 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (1039)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyR 319 (1039)
. ......|+|+||||||||+..++++.|.+++|+.+||+||.+|++||.+|+.+ ..|||||
T Consensus 219 ~--------------~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-----~~~ipyr 279 (329)
T cd01366 219 Q--------------TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-----DSHVPYR 279 (329)
T ss_pred C--------------CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-----CCcCCCc
Confidence 1 23467899999999999999999999999999999999999999999999876 3599999
Q ss_pred CCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccC
Q 001641 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQN 368 (1039)
Q Consensus 320 dSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~Ikn 368 (1039)
||+||+||+|+|||||+|+||+||||...+++||++||+||+||++|+|
T Consensus 280 ~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 280 NSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred ccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999999987
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=5.5e-71 Score=628.67 Aligned_cols=327 Identities=49% Similarity=0.764 Sum_probs=298.4
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCc-ceeeC-------ceeEEeceEeCCCCCCCcccccccchhhHHHhhcCC
Q 001641 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP-QVQIG-------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~-~v~~~-------~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~ 80 (1039)
+|+|+|||||+...|...+...|+.+.++.+ +|.+. .+.|+||+||+++++ |++||+.++.|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~-q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATAS-QEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCC-hHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999998888888998877654 34432 378999999998865 89999999999999999999
Q ss_pred CccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcCCccccccccc
Q 001641 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~~ 160 (1039)
|+||||||+|||||||||+|+ ..++||||+++++||..+........|.|+|||+|||+|.|+|||++.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~---~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~-------- 148 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT---PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS-------- 148 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC---CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--------
Confidence 999999999999999999985 346899999999999999887667899999999999999999999763
Q ss_pred cCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeeeec
Q 001641 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (1039)
Q Consensus 161 ~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~ 240 (1039)
..++.|++++.+++++.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 149 -----------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~- 216 (335)
T smart00129 149 -----------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIK- 216 (335)
T ss_pred -----------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEec-
Confidence 24689999999999999999999999999999999999999999999999999999999999997521
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 001641 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (1039)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRd 320 (1039)
.........|+|+|||||||||..++++.|.+++|+..||+||.+|++||.+|+++. +..|||||+
T Consensus 217 -----------~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~---~~~~ip~r~ 282 (335)
T smart00129 217 -----------NSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ---KSRHIPYRD 282 (335)
T ss_pred -----------CCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC---CCCCCCCcC
Confidence 112345788999999999999999999999999999999999999999999999753 256999999
Q ss_pred CchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 001641 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (1039)
Q Consensus 321 SkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN 373 (1039)
|+||+||+++|||+|+|+||+||||...+++||++||+||+++++|+|+|++|
T Consensus 283 S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 283 SKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999999999999999999999875
No 24
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.9e-68 Score=607.63 Aligned_cols=336 Identities=36% Similarity=0.578 Sum_probs=290.5
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-------------C--ceeEEeceEeCCCCCCCcccccccchhh
Q 001641 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------G--THSFTFDHVYGNGGSPSSAMFGECVAPL 72 (1039)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~-------------~--~~~F~FD~VF~~~~s~q~~vy~~~v~pl 72 (1039)
.+|.|+||+||+.+.... ..|+.|......+-. + .+.|+|.+||+|+++ |.+||+.|+.|+
T Consensus 31 d~v~v~~rvrP~~~~~~~---~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~t-Q~dvF~~~~~pl 106 (809)
T KOG0247|consen 31 DPVLVVCRVRPLSDASED---EGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVT-QADVFDTTVAPL 106 (809)
T ss_pred cchheeEeecCCCCCccc---cceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCcc-HHHHHHHHhHHH
Confidence 489999999999863323 345554433222111 1 257999999999876 899999999999
Q ss_pred HHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhc---------------------------
Q 001641 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL--------------------------- 125 (1039)
Q Consensus 73 V~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~--------------------------- 125 (1039)
|.+++.|.|..+|+||.|||||||||+|++ ..+||+||+++.||+.|...
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~~---~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGTP---DRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecCC---CCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 999999999999999999999999998854 45899999999999999531
Q ss_pred -------------------------------------cccceEEEEeehhhhhhhHHhhhcCCccccccccccCCCCccc
Q 001641 126 -------------------------------------RHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVS 168 (1039)
Q Consensus 126 -------------------------------------~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~~~~~~ 168 (1039)
..+..|.|+|||+|||||.|||||.+.+.. +
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q------~------ 251 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQ------G------ 251 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhcccccc------c------
Confidence 012459999999999999999999875421 1
Q ss_pred cCCCC-CceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeeeecccCCCCC
Q 001641 169 ISGRP-PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDN 247 (1039)
Q Consensus 169 ~~~~~-~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~~~~ 247 (1039)
.++ ...+++|.+|..||.|+++|.|+|.+|++.+|..|..+|++++|..|..|||||+||+|.|.+...
T Consensus 252 --~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~-------- 321 (809)
T KOG0247|consen 252 --KLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPR-------- 321 (809)
T ss_pred --hhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccc--------
Confidence 112 256889999999999999999999999999999999999999999999999999999999988432
Q ss_pred CCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCchhhhh
Q 001641 248 GTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLL 327 (1039)
Q Consensus 248 ~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkLTrLL 327 (1039)
.........|.|.|||||||||..+|++.|.|++||++||.||++||+||.+|..+++.+...+|||||||||+++
T Consensus 322 ----~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlf 397 (809)
T KOG0247|consen 322 ----SQDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLF 397 (809)
T ss_pred ----ccccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHH
Confidence 1123567889999999999999999999999999999999999999999999999888777789999999999999
Q ss_pred hccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccccccc
Q 001641 328 QDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDL 376 (1039)
Q Consensus 328 qdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~IknkpvvN~d~ 376 (1039)
+.+|.|+.+.+||+||+|.+.+|+|+++.|+||.-|..|.+++.++..+
T Consensus 398 q~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~ 446 (809)
T KOG0247|consen 398 KNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQ 446 (809)
T ss_pred HHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccccC
Confidence 9999999999999999999999999999999999999999998886543
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2e-68 Score=597.58 Aligned_cols=323 Identities=36% Similarity=0.571 Sum_probs=284.7
Q ss_pred CCCceEEEEEeCCCCcchhccCCceEEEEeCC------Ccceee------CceeEEeceEeCCCCCCCcccccccchhhH
Q 001641 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHG------NPQVQI------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (1039)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~------~~~v~~------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV 73 (1039)
+...|.||||=||++.+|....-.+.++|+.. +|...+ .++.|.||++||..++ ++.||..+++|||
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~s-Ne~VYrfTa~PlV 284 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESAS-NELVYRFTAKPLV 284 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccc-hHHHHHHhhhHHH
Confidence 45689999999999999986666666655322 333222 3579999999999876 8999999999999
Q ss_pred HHhhcCCCccEEeeccCCCCcccccccCCCCC---CcccchhHHHHHHHHHHHhc-cccceEEEEeehhhhhhhHHhhhc
Q 001641 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREG---FQTGLIPQVMNALFNKIETL-RHQMEFQLHVSFIEILKEEVRDLL 149 (1039)
Q Consensus 74 ~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~---~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIYnE~v~DLL 149 (1039)
..+|+|--+|+||||||||||||||||+|... ...||.-.+.+++|..+... -....+.|+|||||||..+|||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 99999999999999999999999999998743 45799999999999988652 224679999999999999999999
Q ss_pred CCccccccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEE
Q 001641 150 DSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (1039)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~I 229 (1039)
+. +..+.+.||.+..+.|.||++..|.+.+|++.+|+.|+..|+++.|..|..|||||||
T Consensus 365 ~~--------------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAv 424 (676)
T KOG0246|consen 365 ND--------------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAV 424 (676)
T ss_pred cc--------------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCccccccccee
Confidence 64 3468999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccc-cCCCCcchhhhhhhhhhhHHHHHHHHHhhhhc
Q 001641 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKR-TGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (1039)
Q Consensus 230 fti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~k-t~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~ 308 (1039)
|+|.+... .....+|+|.||||||+||... +.++..+-.||..||+||+||.-||.||+.++
T Consensus 425 fQIilr~~-----------------~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk 487 (676)
T KOG0246|consen 425 FQIILRKH-----------------GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK 487 (676)
T ss_pred EeeeeecC-----------------CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC
Confidence 99999752 1245789999999999999854 45677788899999999999999999998765
Q ss_pred cCCCCCcccCCCCchhhhhhccCCC-CceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccc
Q 001641 309 KRREGVHVPYRDSKLTRLLQDSLGG-NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (1039)
Q Consensus 309 ~~~~~~~vPyRdSkLTrLLqdsLGG-ns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~Iknkpv 371 (1039)
.|+|||.||||.+|+|||=| ||+|+||+||||...+.+.||||||||+|++..-..+.
T Consensus 488 -----~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 488 -----SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred -----CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 49999999999999999977 99999999999999999999999999999999876655
No 26
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=5.9e-69 Score=612.20 Aligned_cols=322 Identities=48% Similarity=0.748 Sum_probs=279.1
Q ss_pred EeCCCCcchhccCCceEEEEeCC---------CcceeeCceeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEE
Q 001641 15 HVRPLIGDERAQGCKECVAVTHG---------NPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVL 85 (1039)
Q Consensus 15 RvRP~~~~e~~~~~~~~v~v~~~---------~~~v~~~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~ 85 (1039)
||||++..|...+...++.+... ..........|.||+||+++++ |++||+.++.|+|+++|+|||+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDAT-QEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTST-HHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCC-HHHHHHHHHHHHHHHhhcCCceEEE
Confidence 89999999998888777765421 1111123478999999998866 8999999999999999999999999
Q ss_pred eeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhcccc--ceEEEEeehhhhhhhHHhhhcCCccccccccccCC
Q 001641 86 AYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQ--MEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (1039)
Q Consensus 86 aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~--~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~ 163 (1039)
|||+|||||||||+|+ .....+||||+++++||..+...... ..|.|+|||+|||||.|+|||++...
T Consensus 80 ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~--------- 149 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS--------- 149 (335)
T ss_dssp EEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS---------
T ss_pred eecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc---------
Confidence 9999999999999996 34567999999999999999886554 68999999999999999999987531
Q ss_pred CCccccCCCCCceeEeCCCCc-EEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeeeeccc
Q 001641 164 AGKVSISGRPPIQIRESSNGV-ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHS 242 (1039)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~-~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~ 242 (1039)
....++.|++++..| ++|.|++++.|.++++++.+|..|..+|.++.|.+|..|||||+||+|+|.+......
T Consensus 150 ------~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~ 223 (335)
T PF00225_consen 150 ------KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPS 223 (335)
T ss_dssp ------STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTT
T ss_pred ------ccccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 113478999999866 9999999999999999999999999999999999999999999999999998643210
Q ss_pred CCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCC-CCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCC
Q 001641 243 VSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS-DGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDS 321 (1039)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a-~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdS 321 (1039)
........|+|+|||||||||..++++ .|.+++|+..||+||.+|++||.+|+.+. ...|||||||
T Consensus 224 ----------~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~---~~~~vpyr~S 290 (335)
T PF00225_consen 224 ----------DDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGS---KQSHVPYRDS 290 (335)
T ss_dssp ----------TEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTT---STSSSCGGGS
T ss_pred ----------ccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccc---cchhhhhhcc
Confidence 000125789999999999999999886 47889999999999999999999999872 3569999999
Q ss_pred chhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001641 322 KLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1039)
Q Consensus 322 kLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar~I 366 (1039)
|||+||+|+|||||+|+||+||||+..+++||++||+||+++++|
T Consensus 291 kLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 291 KLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999987
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=9.8e-68 Score=600.48 Aligned_cols=318 Identities=48% Similarity=0.751 Sum_probs=284.4
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC---------ceeEEeceEeCCCCCCCcccccccchhhHHHhhcC
Q 001641 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~---------~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G 79 (1039)
+|+|+|||||+...| ..+...|+.+.++. +|.+. .+.|.||+||+++++ |++||+.++.|+|+++++|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNK-TVTLTPPKDGRKAGPKSFTFDHVFDPNST-QEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCC-EEEEecCccccCcCceEEECCeEEcCCCC-HHHHHHHHHHHHHHHHhCC
Confidence 699999999999877 44556777777653 34432 379999999999866 8999999999999999999
Q ss_pred CCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccc-cceEEEEeehhhhhhhHHhhhcCCccccccc
Q 001641 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (1039)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~ 158 (1039)
||+||||||+|||||||||+|+. ..+||||+++++||..+..... ...|.|++||+|||+|.|+|||++..
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~---~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~----- 149 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSP---KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP----- 149 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-----
Confidence 99999999999999999999954 5689999999999999987543 57899999999999999999998642
Q ss_pred cccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEEEEEEEeee
Q 001641 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (1039)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~ 238 (1039)
...++.+++++.+++++.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..
T Consensus 150 ------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~ 217 (328)
T cd00106 150 ------------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRN 217 (328)
T ss_pred ------------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEe
Confidence 13578999999999999999999999999999999999999999999999999999999999999854
Q ss_pred ecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccC
Q 001641 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (1039)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPy 318 (1039)
... .......|+|+||||||||+..+++..|.+++|+..||+||.+|++||.+|+.+.. ..||||
T Consensus 218 ~~~------------~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~ 282 (328)
T cd00106 218 TTN------------DGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPY 282 (328)
T ss_pred cCC------------CCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCC
Confidence 311 01136789999999999999999999999999999999999999999999998652 359999
Q ss_pred CCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001641 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1039)
Q Consensus 319 RdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar 364 (1039)
|+||||+||+|+|||||+|+||+||||...+++||++||+||+|||
T Consensus 283 r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 283 RDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999986
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-61 Score=579.68 Aligned_cols=290 Identities=49% Similarity=0.757 Sum_probs=267.9
Q ss_pred ceeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHh
Q 001641 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIET 124 (1039)
Q Consensus 45 ~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~ 124 (1039)
...|.||+||++.++ |++||+.++.|+++.++.||||||||||||||||||||.|.. ..+||||+++..||+.++.
T Consensus 55 ~~~~~fdkvf~~~~~-q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~---~~~Gii~~~l~~lf~~l~~ 130 (568)
T COG5059 55 EGTYAFDKVFGPSAT-QEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTE---EEPGIIPLSLKELFSKLED 130 (568)
T ss_pred ceEEEEeeccCCCCc-HHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCc---cccchHHHHHHHHHHHHHh
Confidence 346999999999876 899999999999999999999999999999999999998854 6799999999999999998
Q ss_pred ccccceEEEEeehhhhhhhHHhhhcCCccccccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHH
Q 001641 125 LRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAAC 204 (1039)
Q Consensus 125 ~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~ 204 (1039)
......|.|.|||+|||||+++|||.+.. ..+.++++..++++|.|++++.|.+.+|++.+
T Consensus 131 ~~~~~~~~v~is~lEiYnEk~~DLl~~~~-------------------~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~ 191 (568)
T COG5059 131 LSMTKDFAVSISYLEIYNEKIYDLLSPNE-------------------ESLNIREDSLLGVKVAGLTEKHVSSKEEILDL 191 (568)
T ss_pred cccCcceeeEeehhHHHhhHHHhhccCcc-------------------ccccccccCCCceEeecceEEecCChHHHHHH
Confidence 87778899999999999999999998744 12678899999999999999999999999999
Q ss_pred HHhcccCcccccCCCCCCCCCceEEEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcch
Q 001641 205 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRL 284 (1039)
Q Consensus 205 l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~ 284 (1039)
|..|..+|+++.|.+|..|||||+||+|++.+..+.. .....++|+||||||||++..++..+.++
T Consensus 192 l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~--------------~~~~~~~l~lvDLagSE~~~~~~~~~~r~ 257 (568)
T COG5059 192 LRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS--------------GTSETSKLSLVDLAGSERAARTGNRGTRL 257 (568)
T ss_pred HHHhhhhcccccchhccccccceEEEEEEEEEeccCc--------------cceecceEEEEeeccccccchhhcccchh
Confidence 9999999999999999999999999999999864321 11223799999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCchhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001641 285 KEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1039)
Q Consensus 285 kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~rar 364 (1039)
+||..||+||++||+||++|.+.+ +..|||||+|||||+|+++|||||+|.|||||+|+..++++|.+||+||+||+
T Consensus 258 ~E~~~iN~sLl~Lg~vI~~L~~~~---~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak 334 (568)
T COG5059 258 KEGASINKSLLTLGNVINALGDKK---KSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAK 334 (568)
T ss_pred hhhhhhHhhHHHHHHHHHHHhccc---cCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHh
Confidence 999999999999999999999752 35699999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccc
Q 001641 365 NIQNKPVVNR 374 (1039)
Q Consensus 365 ~IknkpvvN~ 374 (1039)
.|+|+|.+|.
T Consensus 335 ~I~~~~~~~~ 344 (568)
T COG5059 335 SIKNKIQVNS 344 (568)
T ss_pred hcCCcccccC
Confidence 9999999996
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=6.4e-49 Score=410.54 Aligned_cols=179 Identities=50% Similarity=0.806 Sum_probs=163.1
Q ss_pred cccccchhhHHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhh
Q 001641 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (1039)
Q Consensus 64 vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE 143 (1039)
||+.++ |+|+.+++|||+||||||||||||||||+|+. .++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~---~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR---EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC---CCCCcchHHHHH--------------------------
Confidence 899888 99999999999999999999999999999864 578999999887
Q ss_pred HHhhhcCCccccccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCC
Q 001641 144 EVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223 (1039)
Q Consensus 144 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~S 223 (1039)
++.+|..|..+|.++.|.+|..|
T Consensus 58 ---------------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~S 80 (186)
T cd01363 58 ---------------------------------------------------------VIDLMDKGNANRTTAATAMNEHS 80 (186)
T ss_pred ---------------------------------------------------------HHHHHhhccccccccccCCCCcc
Confidence 67788889999999999999999
Q ss_pred CCceEEEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHH
Q 001641 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303 (1039)
Q Consensus 224 SRSH~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~a 303 (1039)
||||+||+|+|.+..... ........|+|+||||||||+.+++++.|.+++|+.+||+||.+|++||.+
T Consensus 81 SRsH~i~~i~v~~~~~~~-----------~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~ 149 (186)
T cd01363 81 SRSHSVFRIHFGGKNALA-----------SATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISA 149 (186)
T ss_pred CcccEEEEEEEEEeecCC-----------CCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999854321 112345789999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcccCCCCchhhhhhccCCCCceeEEEeecCC
Q 001641 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISP 345 (1039)
Q Consensus 304 L~~~~~~~~~~~vPyRdSkLTrLLqdsLGGns~t~mI~~vSP 345 (1039)
|++.. .||||||||||+||+|+|||||+|+||+||||
T Consensus 150 l~~~~-----~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 150 LAERD-----SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HhcCC-----CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 98753 49999999999999999999999999999999
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.93 E-value=1.8e-22 Score=260.64 Aligned_cols=467 Identities=20% Similarity=0.264 Sum_probs=386.1
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccccc
Q 001641 367 QNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQ 446 (1039)
Q Consensus 367 knkpvvN~d~~~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~en~~L~~eL~e~r~rl~~~E~~~~~a~ 446 (1039)
+.||.+.......+|..+..++..++.++... .....+++.....+..+...|..+|..++..++.+++.+..
T Consensus 826 kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~-----e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~-- 898 (1930)
T KOG0161|consen 826 KVKPLLKVTKTEEEMRAKEEEIQKLKEELQKS-----ESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLER-- 898 (1930)
T ss_pred HHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 67888888888999999999999999999765 55667788888889999999999999888888776665433
Q ss_pred CCCccccccchhccccccccccchhhhhhhcCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccccH
Q 001641 447 EGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDT 526 (1039)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~l~~~~~~l~e~~~~~~~~~~eee~~e~E~~~~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~ 526 (1039)
+......++..+.+......+++...........++..+++++.++|++.|..+.++. .++
T Consensus 899 ------------------~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~-~Ek 959 (1930)
T KOG0161|consen 899 ------------------LRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLE-LEK 959 (1930)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1111122222333222333333334444455556777999999999999999888876 566
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001641 527 EALRHH---FGKKIMELEEEKRIVQQERDRLLAEIENL------AANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQ 597 (1039)
Q Consensus 527 ~~~k~~---ye~kl~eLEeei~~LqkErd~Ll~~l~~~------~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~ 597 (1039)
.....+ +++.+..+++.+.+|.+|++.+++.+..+ ++++..+++|+..+++..|.+|+ ..|.++++.+
T Consensus 960 ~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le---~~le~e~~~r 1036 (1930)
T KOG0161|consen 960 NAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLE---VTLEREKRIR 1036 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 555544 78999999999999999999999988876 34566788899999999999999 8999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHHHH
Q 001641 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA---LNQRQ 674 (1039)
Q Consensus 598 ~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~---~~~~q 674 (1039)
.+++|.++|.+.+++.+++.|.+++.++.+ |..++.+++.|+..|+. ++...
T Consensus 1037 ~e~Ek~~rkle~el~~~~e~~~~~~~~~~e-------------------------l~~~l~kke~El~~l~~k~e~e~~~ 1091 (1930)
T KOG0161|consen 1037 MELEKAKRKLEGELKDLQESIEELKKQKEE-------------------------LDNQLKKKESELSQLQSKLEDEQAE 1091 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999 99999999999999998 66777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Q 001641 675 KMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQ 753 (1039)
Q Consensus 675 ~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~Elei~-~~~~e~~~~~e~l~e~R 753 (1039)
...++++++++.+.++.|.+.|+.++.++.+.++.+++ +.+|++.+ ..+.|..+++..+++.+
T Consensus 1092 ~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~d----------------L~~ele~l~~~Lee~~~~t~~q~e~~ 1155 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKELEEELEAERASRAKAERQRRD----------------LSEELEELKEELEEQGGTTAAQLELN 1155 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 78899999999999999999999999999999988888 99999999 78999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhccc
Q 001641 754 AALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRG 833 (1039)
Q Consensus 754 ~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~ 833 (1039)
++...|+..|++ .++++...++ ..++.++..|+..++++..|+++. .+.++..++.
T Consensus 1156 ~k~e~e~~~l~~----------------------~leee~~~~e-~~~~~lr~~~~~~~~el~~qle~l-~~~k~~leke 1211 (1930)
T KOG0161|consen 1156 KKREAEVQKLRR----------------------DLEEETLDHE-AQIEELRKKHADSLAELQEQLEQL-QKDKAKLEKE 1211 (1930)
T ss_pred HHHHHHHHHHHH----------------------HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999998 6666777777 999999999999999999999999 7888899999
Q ss_pred ccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 001641 834 RWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQR----MREQAVTIALA 909 (1039)
Q Consensus 834 r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~----~~~~~~~~~l~ 909 (1039)
+.+....+++....+..+.....+..+.++.+|.+|.|++.++.++.+.+.++..+...+.+++. ..+++-+ .+.
T Consensus 1212 k~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~-~~~ 1290 (1930)
T KOG0161|consen 1212 KSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEA-KLS 1290 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHH-HHH
Confidence 99999999999999999999999999999999999999999999999998887777766655543 3344433 333
Q ss_pred hccccccCCCCchhhhchhhhcCCC
Q 001641 910 SSASGIQQGSSWRSSKHFADDMSGP 934 (1039)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1039)
.++.. ..++..+.++++.-
T Consensus 1291 ~~~r~------~~~~~~qle~~k~q 1309 (1930)
T KOG0161|consen 1291 ALSRD------KQALESQLEELKRQ 1309 (1930)
T ss_pred HHHHH------HHHHHHHHHHHHHH
Confidence 33322 45556666666543
No 31
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.26 E-value=7.4e-13 Score=167.14 Aligned_cols=246 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHH
Q 001641 649 ELLKLKKEGRKNEFERHKLEA---LNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSL 725 (1039)
Q Consensus 649 Ei~qLk~~~rk~~~ei~~L~~---~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1039)
-...|...+.|++.||..+.. +.......|++++.|+.+.+..|.++|+.++.++.++++.+++
T Consensus 5 ~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~d------------- 71 (859)
T PF01576_consen 5 QKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRD------------- 71 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 344588999999999999988 7778888999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCcccccCChhHHHHHHHHHHHH
Q 001641 726 QKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENM 804 (1039)
Q Consensus 726 ~~Wl~~Elei~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~ 804 (1039)
|..||+.+ ..+.|+.+++..+++.++++..||..||+ .|++....++ +.+.++
T Consensus 72 ---L~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr----------------------~LEe~~~~~e-~~~~~l 125 (859)
T PF01576_consen 72 ---LSEELEELKERLEEAGGATQAQIELNKKREAELAKLRR----------------------DLEEANLQHE-ATLAEL 125 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHH----------------------HHHHHHHHHH-HHHHHH
Confidence 99999999 79999999999999999999999999998 6777777888 899999
Q ss_pred HhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 805 LNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLK 884 (1039)
Q Consensus 805 ~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~ 884 (1039)
+.+|++++.+|.+||+++ .+.++..+|.|..+...+.|+...|+.+....++++..++.+|.+|.|++.++++.++.+.
T Consensus 126 rkkh~~~~~eL~eqle~l-qk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~ 204 (859)
T PF01576_consen 126 RKKHQDAVAELNEQLEQL-QKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRN 204 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhhhchhhhcCCCCCC
Q 001641 885 QSEAQRKELVKQQRMREQAVTIALASSASGIQQGSSWRSSKHFADDMSGPLSP 937 (1039)
Q Consensus 885 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1039)
++.....+|+.++......+.-+=...+.- .....++..+++|+...+..
T Consensus 205 el~~~k~kL~~E~~eL~~qLee~e~~~~~l---~r~k~~L~~qLeelk~~lee 254 (859)
T PF01576_consen 205 ELTEQKAKLQSENSELTRQLEEAESQLSQL---QREKSSLESQLEELKRQLEE 254 (859)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHh
Confidence 988888887777665443332221111110 12355667777777776653
No 32
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.21 E-value=1.7e-06 Score=114.41 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=60.3
Q ss_pred HHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 799 ASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLND 878 (1039)
Q Consensus 799 ~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~e 878 (1039)
..+++........+.++++++..+ +-..+..++.|-.....+.++...+...-......+...+..+..|.|.+.+...
T Consensus 1375 eelee~kk~l~~~lq~~qe~~e~~-~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~ 1453 (1930)
T KOG0161|consen 1375 EELEELKKKLQQRLQELEEQIEAA-NAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEK 1453 (1930)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666677776666 3333455667777777777787777777777777777777777777777777777
Q ss_pred HHHHHHHHHH
Q 001641 879 LVALLKQSEA 888 (1039)
Q Consensus 879 l~~~l~~~~~ 888 (1039)
+..++.....
T Consensus 1454 l~~Eld~aq~ 1463 (1930)
T KOG0161|consen 1454 LQAELDAAQR 1463 (1930)
T ss_pred HHHHHHHHHH
Confidence 6666654433
No 33
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-05 Score=99.83 Aligned_cols=255 Identities=18% Similarity=0.203 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhhhhhHHHH
Q 001641 502 KELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA--ANSDGHTQKMQDGHTLK 579 (1039)
Q Consensus 502 ~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~--~~~~~~~~KLke~~ekk 579 (1039)
.+++.|..++.+++++++..+ ++...+.+..+++..+++.|.+...... .+...++.+....|-+.
T Consensus 508 ~~~~~l~~~~~~~~eele~~q------------~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~ 575 (1317)
T KOG0612|consen 508 AKKRKLEALVRQLEEELEDAQ------------KKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQ 575 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHH
Confidence 344555555566665554433 3334444455555555555555544432 22233444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQ---SIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1039)
Q Consensus 580 L~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~---~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~ 656 (1039)
+++.+.+..++..+... ++..+.++...-+.++.+.. ++.......+.-++++..-.........+++.+++.
T Consensus 576 iq~~~e~~~~~~d~l~~---le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e- 651 (1317)
T KOG0612|consen 576 IQQELEENRDLEDKLSL---LEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE- 651 (1317)
T ss_pred HHHHhhccccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-
Confidence 55555433344333332 33333444444444444433 344444555666677777777777777777777776
Q ss_pred hhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHH
Q 001641 657 GRKNEFE------RHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLE 730 (1039)
Q Consensus 657 ~rk~~~e------i~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~ 730 (1039)
+++...+ -..++.+++++..+++..++++.+..+++ .|..+ ..
T Consensus 652 l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~-----------------------------e~ 700 (1317)
T KOG0612|consen 652 LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDK-----------------------------EA 700 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH-----------------------------HH
Confidence 5554444 22366678888888888888888888888 22211 33
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHhhcH
Q 001641 731 HELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSS 809 (1039)
Q Consensus 731 ~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~ 809 (1039)
+--++..|+.+.+.+++++..++.+++.++..|+..- ++.. ...|..++...............||.++..++
T Consensus 701 ~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~----~~~~--~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~ 773 (1317)
T KOG0612|consen 701 QMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDY----KQSQ--EKLNELRRSKDQLITEVLKLQSMLEQEISKRL 773 (1317)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhh----hhhc--cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667888899999999999999999999998732 1111 23466666666665666666667776666443
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=98.65 E-value=0.006 Score=79.15 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.2
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
.+-+|++|||||..+
T Consensus 26 ~~i~G~Ng~GKStil 40 (880)
T PRK02224 26 TVIHGVNGSGKSSLL 40 (880)
T ss_pred EEEECCCCCCHHHHH
Confidence 345899999998776
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=98.61 E-value=0.0046 Score=80.22 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~ 596 (1039)
++.++..++.++..+..+.+.+...+..+. . --+.|+..|.+++.++..|+.+...
T Consensus 375 ~~~~l~~~~~~l~~l~~el~el~~~l~~~~-------~-~~~~~e~~l~~l~~~~~~l~~~~~~ 430 (880)
T PRK02224 375 AREAVEDRREEIEELEEEIEELRERFGDAP-------V-DLGNAEDFLEELREERDELREREAE 430 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcch-------h-hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554321 0 1244566666666666666644443
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.51 E-value=0.014 Score=77.89 Aligned_cols=93 Identities=20% Similarity=0.322 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHH
Q 001641 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (1039)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e 577 (1039)
..+..++..++..|+..+.....+.+.+...+... -+++-++..+...++.+.+.|.....+++...+....+++..+.
T Consensus 316 ~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~-~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~ 394 (1201)
T PF12128_consen 316 SALNADLARIKSELDEIEQQKKDYEDADIEQLIAR-VDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFN 394 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566655555555554444333333 24455666666666666666666666665555555556666665
Q ss_pred HHHHHHHHHHHHHH
Q 001641 578 LKLKALEAQILELK 591 (1039)
Q Consensus 578 kkL~eLE~el~~Lk 591 (1039)
..+..++.++..++
T Consensus 395 ~~~~~~~~~~~~~~ 408 (1201)
T PF12128_consen 395 RQQERLQAQQDEIR 408 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555444
No 37
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=0.014 Score=78.84 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001641 378 SSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRA 436 (1039)
Q Consensus 378 ~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~en~~L~~eL~e~r~rl~ 436 (1039)
...+..+..++..++...... ..++..+..++..+..+...+..+|......+.
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~-----~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKL-----NKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777776654 455566666666666666666666665554443
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.46 E-value=0.0092 Score=71.15 Aligned_cols=53 Identities=25% Similarity=0.232 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 854 VAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTI 906 (1039)
Q Consensus 854 ~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~ 906 (1039)
..-..++++.+...+|.|++.-+.-+..+..++..+.++|..-.+..++.+-+
T Consensus 404 e~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 404 EKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567788888888888877777777778888888766555555554443
No 39
>PRK03918 chromosome segregation protein; Provisional
Probab=98.37 E-value=0.029 Score=72.85 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=12.0
Q ss_pred EeeccCCCCccccc
Q 001641 85 LAYGQTGSGKTYTM 98 (1039)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (1039)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 46899999999776
No 40
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.34 E-value=0.00017 Score=85.47 Aligned_cols=320 Identities=19% Similarity=0.221 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHH
Q 001641 502 KELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLK 581 (1039)
Q Consensus 502 ~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~ 581 (1039)
+||++||.+|. .|-+++..||.+++.|+.+.+.|...... ....++..|+.-|.
T Consensus 42 ~El~~LNDRLA-------------------~YIekVR~LEaqN~~L~~di~~lr~~~~~-------~ts~ik~~ye~El~ 95 (546)
T KOG0977|consen 42 KELQELNDRLA-------------------VYIEKVRFLEAQNRKLEHDINLLRGVVGR-------ETSGIKAKYEAELA 95 (546)
T ss_pred HHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CCcchhHHhhhhHH
Confidence 46777776665 36789999999999998888877755432 33456666654444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh
Q 001641 582 ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWK---ASREKELLKLKKEGR 658 (1039)
Q Consensus 582 eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~---~~~~kEi~qLk~~~r 658 (1039)
.+-.-|. +..+-+.+.+.++..|++|+.+++..-.+..+-....-++.+.|. ...+-|+..++...+
T Consensus 96 ~ar~~l~----------e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 96 TARKLLD----------ETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 4432222 223344555666666666666666555554333333333333222 223334444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhh-----hhhccccCCCCCCCCCCchH
Q 001641 659 KNEFERHKLEALNQRQKMVLQRKT----------EEAAIATKRLKELLEARKSSA-----RENSVNSTGYTTPTGQSNEK 723 (1039)
Q Consensus 659 k~~~ei~~L~~~~~~q~~vL~rK~----------eE~~a~~krLke~Le~~k~~~-----~~~~~~~~~~~~~~~~~~~~ 723 (1039)
..+.++..|..+..+-..-|.+=- -++.....-|.+.|+-.+..- .-.....+++. .
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--------~ 237 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--------A 237 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--------c
Confidence 444443333322211111111000 011112222222222111000 00000011100 0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-H----HHHHHHHHHhhcccccCCCCCCCCCCCCcccccCChhHHHHHH
Q 001641 724 SLQKWLEHELEVSANVHEVRFKYEKQSQVQA-A----LADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERI 798 (1039)
Q Consensus 724 ~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~-~----l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i 798 (1039)
........|| ...+.|.++.++..+.... . ...++..++...+ + -+..+
T Consensus 238 ~~r~~F~~eL--~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~-------~-----------------~~~~~ 291 (546)
T KOG0977|consen 238 DNREYFKNEL--ALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAE-------R-----------------ANVEQ 291 (546)
T ss_pred cchHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhc-------c-----------------ccchh
Confidence 0111223332 2345666666666665532 2 2233333332100 0 01112
Q ss_pred HHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 799 ASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLND 878 (1039)
Q Consensus 799 ~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~e 878 (1039)
.+.-+++...-..|..|..+|.++|.+- ......+.|.++.| -+..-.-+..+..++.+|..+.+.+..
T Consensus 292 ~~~rEEl~~~R~~i~~Lr~klselE~~n--------~~L~~~I~dL~~ql---~e~~r~~e~~L~~kd~~i~~mReec~~ 360 (546)
T KOG0977|consen 292 NYAREELRRIRSRISGLRAKLSELESRN--------SALEKRIEDLEYQL---DEDQRSFEQALNDKDAEIAKMREECQQ 360 (546)
T ss_pred HHHHHHHHHHHhcccchhhhhccccccC--------hhHHHHHHHHHhhh---hhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3343445555567888888888886542 23455677777776 455555667788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 879 LVALLKQSEAQRKELVKQQRMREQ 902 (1039)
Q Consensus 879 l~~~l~~~~~~~~~l~~~~~~~~~ 902 (1039)
+.-+++.|=.-..-|..|+..|..
T Consensus 361 l~~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 361 LSVELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHHHHHHhhchHhHHHhHHHHHHH
Confidence 888888777666667777777654
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.23 E-value=0.033 Score=74.28 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=19.8
Q ss_pred ccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 67 ~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..+.|++-.+..|+|+- .||.||||+-.+
T Consensus 13 SF~~~~~i~f~~~~t~I---vGPNGSGKSNI~ 41 (1163)
T COG1196 13 SFADPTEINFSPGFTAI---VGPNGSGKSNIV 41 (1163)
T ss_pred cCCCCeeeecCCCCeEE---ECCCCCchHHHH
Confidence 33445555566677764 499999998666
No 42
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=0.058 Score=72.95 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=12.7
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
.++-+|++|||||..+
T Consensus 30 ~~~I~G~NGaGKTTil 45 (1311)
T TIGR00606 30 LTILVGPNGAGKTTII 45 (1311)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4467899999999764
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.21 E-value=0.024 Score=75.72 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.1
Q ss_pred EeeccCCCCccccc
Q 001641 85 LAYGQTGSGKTYTM 98 (1039)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (1039)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 44899999999887
No 44
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.18 E-value=2.6e-08 Score=120.94 Aligned_cols=257 Identities=23% Similarity=0.287 Sum_probs=154.7
Q ss_pred CCCCCCCceEEEEEeCCCCcchh---------ccCCceEEEEeCCC-cceeeCceeEEeceEeCCCCCCCcccccccchh
Q 001641 2 DTASENCSVKVAVHVRPLIGDER---------AQGCKECVAVTHGN-PQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (1039)
Q Consensus 2 ~~~~~~~~v~V~vRvRP~~~~e~---------~~~~~~~v~v~~~~-~~v~~~~~~F~FD~VF~~~~s~q~~vy~~~v~p 71 (1039)
++-++.+.++|+|+|+|...... .........+..+. ..+......|.||.+|.+... ...++.. ...
T Consensus 299 ~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~-~~~ 376 (568)
T COG5059 299 DSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEI-EILVFRE-QSQ 376 (568)
T ss_pred HhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhh-hhHHHHH-HHh
Confidence 44567789999999999984321 00011000111111 122233367999999987654 4444443 566
Q ss_pred hHHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccc-cceEEEEeehhhhhhhHHhhhcC
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLD 150 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIYnE~v~DLL~ 150 (1039)
+++.-++| +++||++++|+++|| .....++.+-.+...|..+..... .+.+...+-|+++|-....+++.
T Consensus 377 ~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (568)
T COG5059 377 LSQSSLSG----IFAYMQSLKKETETL-----KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLRE 447 (568)
T ss_pred hhhhhhhh----HHHHHhhhhhhhhcc-----cchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777 999999999999999 334456667777888887765432 34566666777777333333332
Q ss_pred CccccccccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceEEE
Q 001641 151 SVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (1039)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~If 230 (1039)
...... ...-.. ...++.+. +.-++ .......+.... ......+..+.+..|..++++|.+|
T Consensus 448 e~~~~~-~~~~~~----------~~~~~~~~-----~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~ 509 (568)
T COG5059 448 EELSKK-KTKIHK----------LNKLRHDL-----SSLLS-SIPEETSDRVES-EKASKLRSSASTKLNLRSSRSHSKF 509 (568)
T ss_pred HhcCCh-HHHHHH----------HHHHHHHH-----HHhhh-hcchhhhhhhhh-hhhccchhhcccchhhhhcccchhh
Confidence 211000 000000 00000000 00000 000111111111 1456778889999999999999999
Q ss_pred EEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCCcchhhhhhhhhhhHHHHHHHHHhh
Q 001641 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305 (1039)
Q Consensus 231 ti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~r~kE~~~IN~SL~aLg~VI~aL~ 305 (1039)
+........ .....+ ++.|||||+||. -+...|.++++..++|++|..+|.+|.++.
T Consensus 510 ~~~~~~~~~---------------~~~~~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 510 RDHLNGSNS---------------STKELS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhcccchhh---------------hhHHHH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 876543110 000111 799999999999 889999999999999999999999998874
No 45
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.17 E-value=3.8e-07 Score=115.98 Aligned_cols=96 Identities=29% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcccccc
Q 001641 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQER-------DRLLAEIENLAANSDGH 568 (1039)
Q Consensus 496 ~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkEr-------d~Ll~~l~~~~~~~~~~ 568 (1039)
...+.+.|+..|.++|+.--..+.. ....++..|.+.+.+|.+++..+++.+ ..|..++..+...- +.
T Consensus 96 ~~kkrE~El~~Lrr~LEe~~~~~e~----~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l-~~ 170 (859)
T PF01576_consen 96 LNKKREAELAKLRRDLEEANLQHEA----TLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQL-DS 170 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HH
Confidence 3445567777787777654332211 112344455555555555555554444 44444444443222 24
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001641 569 TQKMQDGHTLKLKALEAQILELKKKQES 596 (1039)
Q Consensus 569 ~~KLke~~ekkL~eLE~el~~Lkkk~~~ 596 (1039)
..+-+...+++.+.+|.+|.+|+.+..+
T Consensus 171 ~~k~k~~~Ek~~K~lE~qL~El~~klee 198 (859)
T PF01576_consen 171 LQKAKQEAEKKRKQLEAQLNELQAKLEE 198 (859)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 4555666677777777777777755444
No 46
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.15 E-value=0.029 Score=74.84 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 839 RFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMRE 901 (1039)
Q Consensus 839 ~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~ 901 (1039)
..+.+++..++.|-...-+-+........++.++..++++|...+.++.....++..+.+..+
T Consensus 965 ~~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 965 DDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666655544221111111111245555556666666666666555555555555555
No 47
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.13 E-value=0.026 Score=69.17 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001641 633 KQEAEQFRQWKASREKELLKLKKE--GRKNEFERHKLEALNQRQK-MVLQRKTEEAAIATKRLKELLE 697 (1039)
Q Consensus 633 kee~~~~r~~~~~~~kEi~qLk~~--~rk~~~ei~~L~~~~~~q~-~vL~rK~eE~~a~~krLke~Le 697 (1039)
|.|.+....|+.....|++.+-.- +.--+.||..-.++.-++. -.|+.+++|+..-..=||...+
T Consensus 289 R~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 289 RKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666776666666544332 2222333333333222222 2477888888877777776655
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.10 E-value=0.014 Score=69.58 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHhhhHHHH
Q 001641 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLK--ALEAQILELKKKQES-QVELLKQKHKSDEAA 611 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~--eLE~el~~Lkkk~~~-~~~l~k~k~k~e~~~ 611 (1039)
++|..+++.+...+.+...|..+|..+....| +-+.+-|..+|+ +|..++.+...+.++ +.++.+.+......+
T Consensus 290 eqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RD---rt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~ 366 (546)
T PF07888_consen 290 EQLRSAQEQLQASQQEAELLRKELSDAVNVRD---RTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSA 366 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544422222 223333333332 333333433333332 345555555555545
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 612 KRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKR 691 (1039)
Q Consensus 612 ~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~kr 691 (1039)
...+++|+.|+..+..+=+.+++ -+......+++|.+.+...+=.-.|..+.-.+......|+++..|++...+..
T Consensus 367 e~~k~~ie~L~~el~~~e~~lqE----er~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQe 442 (546)
T PF07888_consen 367 EADKDEIEKLSRELQMLEEHLQE----ERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQE 442 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666655554444443 34444566666665554443222232222223333444555555555555555
Q ss_pred HHHHH
Q 001641 692 LKELL 696 (1039)
Q Consensus 692 Lke~L 696 (1039)
|.+..
T Consensus 443 L~~yi 447 (546)
T PF07888_consen 443 LLEYI 447 (546)
T ss_pred HHHHH
Confidence 54433
No 49
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.10 E-value=0.026 Score=75.41 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 847 LLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELV 894 (1039)
Q Consensus 847 ~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~ 894 (1039)
.++.+..............+.++..++..+.++...+..+..+...+.
T Consensus 449 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~ 496 (1164)
T TIGR02169 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444455555555555544444444444433
No 50
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.07 E-value=0.082 Score=65.85 Aligned_cols=118 Identities=23% Similarity=0.262 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccccccchhh
Q 001641 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA------ANSDGHTQKM 572 (1039)
Q Consensus 499 ~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~------~~~~~~~~KL 572 (1039)
.+..++..++++|...+.+... ...++.+|..++..|+.+...|...+.-+. +.-+..+.+.
T Consensus 298 tleseiiqlkqkl~dm~~erdt------------dr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e 365 (1195)
T KOG4643|consen 298 TLESEIIQLKQKLDDMRSERDT------------DRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVE 365 (1195)
T ss_pred ChHHHHHHHHHHHHHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHH
Confidence 4556666677766666654322 126677888888888887777765544331 1111122222
Q ss_pred hhhHH------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001641 573 QDGHT------------LKLKALEA-QILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (1039)
Q Consensus 573 ke~~e------------kkL~eLE~-el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L 628 (1039)
.+... ..+..|+. +-.+.....--|..|.+.+++++.++..|++.|.+|..++++|
T Consensus 366 ~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~el 434 (1195)
T KOG4643|consen 366 NEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAEL 434 (1195)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 22221 11111110 0011222233377888888999999999999999999999884
No 51
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.088 Score=65.43 Aligned_cols=227 Identities=19% Similarity=0.270 Sum_probs=113.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH---hhhccccHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Q 001641 497 QNTMDKELNELNKRLEQKESEM---KLFGDIDTEA--LRHH-FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQ 570 (1039)
Q Consensus 497 q~~l~~El~eL~kqLe~kE~~~---k~~~~~d~~~--~k~~-ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~ 570 (1039)
..+.+..+..|+..|..+|++- .++++.|+.- +.-. |+..+.+...++..|...+-...+.-.+. .+...
T Consensus 186 ~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~----~~~~~ 261 (1200)
T KOG0964|consen 186 REKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQY----IDALD 261 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhH----HHHHH
Confidence 3455566677777776666543 3333333322 1111 55555555555554433332222111110 00111
Q ss_pred hh---hhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 571 KM---QDGHTLKLKALEAQILELKKKQ----ESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWK 643 (1039)
Q Consensus 571 KL---ke~~ekkL~eLE~el~~Lkkk~----~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~ 643 (1039)
+. .+.....+.+|+..+..|+... ..+.++.+.|-+++-+++.|+++|..=+.++..
T Consensus 262 ~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~---------------- 325 (1200)
T KOG0964|consen 262 KVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNL---------------- 325 (1200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhh----------------
Confidence 11 1233445556665555555311 224556666666777777777776555544444
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchH
Q 001641 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEK 723 (1039)
Q Consensus 644 ~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~ 723 (1039)
....+..++.+...++.|+.+.+-.++....--.+-...++.+..+.++.+.++ . ..+...+.+
T Consensus 326 --~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq----------g----r~sqFssk~ 389 (1200)
T KOG0964|consen 326 --ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ----------G----RYSQFSSKE 389 (1200)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh----------c----cccccCcHH
Confidence 444455567777777777777766555543322233333333444444444432 1 112334567
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 001641 724 SLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADE 759 (1039)
Q Consensus 724 ~~~~Wl~~Elei~-~~~~e~~~~~e~l~e~R~~l~~E 759 (1039)
...+|+..|++-+ ..+.+....-++++-+...+..+
T Consensus 390 eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~ 426 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESE 426 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 7899999999988 44555544444444433333333
No 52
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.03 E-value=0.096 Score=65.29 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=101.5
Q ss_pred HHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCcccccCChhHHHHHH-HHHHH
Q 001641 726 QKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERI-ASLEN 803 (1039)
Q Consensus 726 ~~Wl~~Elei~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i-~~Le~ 803 (1039)
.+-|.-+.|++ ..+.+....+..+..+-+.+..|.++|..... +..- .+=+.
T Consensus 410 ~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~--------------------------t~~~s~~rq~ 463 (1195)
T KOG4643|consen 410 HKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS--------------------------TVTRSLSRQS 463 (1195)
T ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHhHHHHH
Confidence 44588888888 67888888888888888888888887765211 1110 11122
Q ss_pred HHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 804 MLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALL 883 (1039)
Q Consensus 804 ~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l 883 (1039)
..+...+++..+.+|+...-+..++. .-+.-.++.++.-.+..|......-+.+.+....++..+..++.+|+..+
T Consensus 464 ~e~e~~~q~ls~~~Q~~~et~el~~~----iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l 539 (1195)
T KOG4643|consen 464 LENEELDQLLSLQDQLEAETEELLNQ----IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELL 539 (1195)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777777776653333221 12334567778888888888888888899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001641 884 KQSEAQRKELVKQQRMREQ 902 (1039)
Q Consensus 884 ~~~~~~~~~l~~~~~~~~~ 902 (1039)
-.++.+..-|..+....-+
T Consensus 540 ~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 540 GNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8888888887766655444
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.01 E-value=0.052 Score=61.69 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~ 612 (1039)
|-+++..|+.++..|+.+...+. .........++..|+..|.+|..+|..+... +.+.+-++.
T Consensus 16 YIekVr~LE~~N~~Le~~i~~~~-------~~~~~~~~~~~~~ye~el~~lr~~id~~~~e----------ka~l~~e~~ 78 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESEIEELR-------EKKGEEVSRIKEMYEEELRELRRQIDDLSKE----------KARLELEID 78 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHCHHHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH-------hcccccCcccccchhhHHHHhHHhhhhHHHH----------hhHHhhhhh
Confidence 55666667766666555544443 3323355678899999999998777766533 345555566
Q ss_pred HHHHHHHHHHHHHHH
Q 001641 613 RLQAEIQSIKAQKVQ 627 (1039)
Q Consensus 613 ~L~~ei~~lk~~kv~ 627 (1039)
.+..++.+++.....
T Consensus 79 ~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 79 NLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 666666666554444
No 54
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.00 E-value=0.089 Score=63.78 Aligned_cols=78 Identities=8% Similarity=0.035 Sum_probs=47.9
Q ss_pred ccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 832 RGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALAS 910 (1039)
Q Consensus 832 k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~ 910 (1039)
.+.-...+.|.-..-++..+.. +.++=...+..+.++.+++..+.--....+.+++..++..-+.+..-+.+|-.-++
T Consensus 449 ~aegsrrraIeQcnemv~rir~-l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~r~ag 526 (1265)
T KOG0976|consen 449 HAEGSRRRAIEQCNEMVDRIRA-LMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAHRKAG 526 (1265)
T ss_pred hhhhhHhhHHHHHHHHHHHHHH-HhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3344444555555555544433 33333444567788888888887777777788888887666666666665554433
No 55
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.97 E-value=0.12 Score=68.93 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.7
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
+++-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4467899999999988
No 56
>PRK03918 chromosome segregation protein; Provisional
Probab=97.95 E-value=0.18 Score=65.58 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=6.4
Q ss_pred cCCHHHHHHHHHh
Q 001641 195 VNTLQEMAACLEQ 207 (1039)
Q Consensus 195 V~s~~e~~~~l~~ 207 (1039)
..+..++..++..
T Consensus 107 ~~~~~~~~~~i~~ 119 (880)
T PRK03918 107 EEGDSSVREWVER 119 (880)
T ss_pred cccHHHHHHHHHH
Confidence 3444555555544
No 57
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.92 E-value=0.24 Score=66.32 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=19.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhc
Q 001641 495 LWQNTMDKELNELNKRLEQKESEMKLFG 522 (1039)
Q Consensus 495 ~~q~~l~~El~eL~kqLe~kE~~~k~~~ 522 (1039)
..-..|..+++.|.+.++.+...++.+.
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~~r~l~ 832 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSDLRELT 832 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777888888777776665554
No 58
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.92 E-value=0.25 Score=66.23 Aligned_cols=231 Identities=19% Similarity=0.226 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccchhhhhhH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 001641 535 KKIMELEEEKRIVQQERDRLLAEIENLAA---NSDGHTQKMQDGH---TLKLKALEAQILELKKKQES----QVELLKQK 604 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~---~~~~~~~KLke~~---ekkL~eLE~el~~Lkkk~~~----~~~l~k~k 604 (1039)
+++.-|+..+..+..|.+.|.++...+.. ..+...+.+.+++ ..++..++.++..|+++..- ..+|....
T Consensus 689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~ 768 (1822)
T KOG4674|consen 689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666655444421 1122233444443 46788899999999977665 55666677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (1039)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE 684 (1039)
.+...+...|+..+..|+.++..+-.---+.-.++...-....+++..||+++.....+++.+......+-.-++..+.+
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~ 848 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDE 848 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 77778888888888888888887666666666677778888999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc--------------ccCCCCCCCCCCchHHHHHHHHHHHHHH----HhHHHHHHHH
Q 001641 685 AAIATKRLKELLEARKSSARENSV--------------NSTGYTTPTGQSNEKSLQKWLEHELEVS----ANVHEVRFKY 746 (1039)
Q Consensus 685 ~~a~~krLke~Le~~k~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~Wl~~Elei~----~~~~e~~~~~ 746 (1039)
+......+...|........+.+. ...+.+.++......-...-|..+++-+ ..+.++....
T Consensus 849 ~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i 928 (1822)
T KOG4674|consen 849 LESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQI 928 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777554333322221 0011011000000001112244444444 4566666666
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001641 747 EKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 747 e~l~e~R~~l~~El~~Lk~ 765 (1039)
...++.-..+++-|..++.
T Consensus 929 ~~yqe~~~s~eqsl~~~ks 947 (1822)
T KOG4674|consen 929 REYQEEYSSLEQSLESVKS 947 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666654
No 59
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.81 E-value=0.19 Score=67.34 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=9.0
Q ss_pred eeeecCCCccccc
Q 001641 264 HLVDLAGSERAKR 276 (1039)
Q Consensus 264 ~lVDLAGSEr~~k 276 (1039)
.|-+-||.-....
T Consensus 160 iiEEaaGv~~y~~ 172 (1163)
T COG1196 160 LIEEAAGVSKYKE 172 (1163)
T ss_pred HHHHHhchHHHHH
Confidence 6777888776643
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.78 E-value=0.22 Score=61.42 Aligned_cols=43 Identities=37% Similarity=0.412 Sum_probs=35.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1039)
Q Consensus 653 Lk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~ 699 (1039)
|-+++.++..|+..|. +++-.|+|+++++.+.+..|+|..++-
T Consensus 401 ~~kelE~k~sE~~eL~----r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELR----RQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777775 566779999999999999999988864
No 61
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.77 E-value=0.27 Score=62.03 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=64.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhH
Q 001641 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (1039)
Q Consensus 497 q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ 576 (1039)
...+..|+.+|...++.++..+..+. .+|..|++.++.=.++.+.+...+.. .... .+...+...+
T Consensus 373 ~~~~~~Ei~~l~d~~d~~e~ki~~Lq------------~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~-~~~~~~~~~l 438 (775)
T PF10174_consen 373 KSRLQGEIEDLRDMLDKKERKINVLQ------------KKIENLEEQLREKDRQLDEEKERLSS-QADS-SNEDEALETL 438 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhc-cccc-cchHHHHHHH
Confidence 34456677777777787777776655 55666666665444444444445543 2222 2334555677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (1039)
Q Consensus 577 ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~m 632 (1039)
+.-+.+.+..+..|.... .... ...-..+..++.++.+++.....|.+.+
T Consensus 439 Eea~~eker~~e~l~e~r-~~~e-----~e~~Eele~~~~e~~~lk~~~~~LQ~eL 488 (775)
T PF10174_consen 439 EEALREKERLQERLEEQR-ERAE-----KERQEELETYQKELKELKAKLESLQKEL 488 (775)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 777777777666665321 1111 1112334556666666666666555544
No 62
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.65 E-value=0.44 Score=61.08 Aligned_cols=125 Identities=20% Similarity=0.217 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAA------NSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHK 606 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~------~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k 606 (1039)
+++++.+.++++++|..+...+.++++.+.. ....++.+++.+.+....++-.++++.++-.....++.+.-+.
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~ 578 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQ 578 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHH
Confidence 5667777777777777777777766666521 1233444555555555566666666666555556666665555
Q ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 607 SDEAAKRLQAEIQSI---KAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEG 657 (1039)
Q Consensus 607 ~e~~~~~L~~ei~~l---k~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~ 657 (1039)
.......+.+-+..+ +..+.++-++.+.++++.+.......-++..|+.+.
T Consensus 579 ~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i 632 (1317)
T KOG0612|consen 579 ELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEI 632 (1317)
T ss_pred HhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 555444444444444 344445556666666666666665555555555443
No 63
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.61 E-value=0.32 Score=58.46 Aligned_cols=74 Identities=26% Similarity=0.350 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQK--MQDGHTLKLKALEAQILELKKKQESQVELLK 602 (1039)
Q Consensus 528 ~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~K--Lke~~ekkL~eLE~el~~Lkkk~~~~~~l~k 602 (1039)
.++..|-..|..||.++..+-+|||.|.-++.++..+-...+.+ |+++- ..|..|-.+=.+|-|++-.+..+.|
T Consensus 402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkd-E~I~~lm~EGEkLSK~ql~qs~iIk 477 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKD-EIINQLMAEGEKLSKKQLAQSAIIK 477 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46677999999999999999999999999988763221112222 22222 3455555555566666555554444
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.55 E-value=0.85 Score=61.80 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=13.7
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
++.-+|++|||||.+|
T Consensus 29 ~~~l~G~NGaGKSTll 44 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTM 44 (1486)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4556799999999998
No 65
>PRK01156 chromosome segregation protein; Provisional
Probab=97.52 E-value=0.71 Score=60.27 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.4
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999875
No 66
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.51 E-value=0.013 Score=72.90 Aligned_cols=61 Identities=31% Similarity=0.364 Sum_probs=27.4
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 810 KALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLND 878 (1039)
Q Consensus 810 ~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~e 878 (1039)
.+|..|+++-..+|+-..+= .+=|.++..-++|||-.|+.+ .+++..+|.+|.||+.|+.+
T Consensus 594 ~aL~amqdk~~~LE~sLsaE-triKldLfsaLg~akrq~ei~-------~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 594 SALSAMQDKNQHLENSLSAE-TRIKLDLFSALGDAKRQLEIA-------QGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 45566666555554322210 122344444444444444222 23344455555555555544
No 67
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.49 E-value=0.62 Score=58.85 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001641 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 597 ~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~ 669 (1039)
...+++.-++.+.++..|+..+.-....+-.+++.|...-......|.. +-+++-++.++..|+..+++
T Consensus 240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k----~d~~~~eL~rk~~E~~~~qt 308 (775)
T PF10174_consen 240 IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSK----MDRLKLELSRKKSELEALQT 308 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444455666666665544444443333 66777777777777776665
No 68
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.43 E-value=0.74 Score=58.32 Aligned_cols=104 Identities=13% Similarity=0.210 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001641 538 MELEEEKRIVQQERDRLLAEIENLAA---NSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (1039)
Q Consensus 538 ~eLEeei~~LqkErd~Ll~~l~~~~~---~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L 614 (1039)
.+.+.++..-.+|-+.++..+.+... +...++++.-++-....++++.-+.+|+.-.+.-.+.+..+...-..|+.+
T Consensus 1418 ~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~v 1497 (1758)
T KOG0994|consen 1418 GDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEV 1497 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 34455555555555555555544321 122233444444555666777777777776666667777777777778888
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 001641 615 QAEIQSIK-----AQKVQLQNKIKQEAEQFRQ 641 (1039)
Q Consensus 615 ~~ei~~lk-----~~kv~L~k~mkee~~~~r~ 641 (1039)
-+++-.|. .|...|.-+|++-......
T Consensus 1498 A~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~n 1529 (1758)
T KOG0994|consen 1498 AEEVLALELPLTPEQIQQLTGEIQERVASLPN 1529 (1758)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHhccc
Confidence 77777763 6666777777766555444
No 69
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.37 E-value=0.61 Score=56.16 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=21.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001641 568 HTQKMQDGHTLKLKALEAQILELKKKQES 596 (1039)
Q Consensus 568 ~~~KLke~~ekkL~eLE~el~~Lkkk~~~ 596 (1039)
...-++++|-+++.+||+.+.-+-++...
T Consensus 399 ~~ssl~~e~~QRva~lEkKvqa~~kERDa 427 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATLEKKVQALTKERDA 427 (961)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34578899999999999777666544433
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.45 Score=57.95 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=12.8
Q ss_pred cccchhHHHHHHHHHHHh
Q 001641 107 QTGLIPQVMNALFNKIET 124 (1039)
Q Consensus 107 ~~Giipr~~~~LF~~i~~ 124 (1039)
..||-+.++..|+...+-
T Consensus 43 qS~LP~~VLaqIWALsDl 60 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWALSDL 60 (1118)
T ss_pred hcCCChHHHHHHHHhhhc
Confidence 357878888888865543
No 71
>PRK11637 AmiB activator; Provisional
Probab=97.36 E-value=0.56 Score=55.92 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=9.4
Q ss_pred eeee-ecccCcchhhhhhh
Q 001641 1002 LQFK-WKWQKPWKLSEWIK 1019 (1039)
Q Consensus 1002 ~~~~-~~~~~~~~~~~~~~ 1019 (1039)
|+|. |+.-+|-....|++
T Consensus 409 l~fei~~~~~~vnP~~~l~ 427 (428)
T PRK11637 409 LYFEIRRQGQAVNPQPWLG 427 (428)
T ss_pred EEEEEEECCEEeChHHHhC
Confidence 4444 33445656666764
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.25 E-value=1.8 Score=58.88 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 001641 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ------NKIKQEAEQFRQWKASREKEL 650 (1039)
Q Consensus 577 ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~------k~mkee~~~~r~~~~~~~kEi 650 (1039)
+.++..++.++..|+.+ ..++.......+.++..++..+..+...+.-+- ..+......|...-...+.++
T Consensus 382 eeEleelEeeLeeLqeq---Laelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL 458 (1486)
T PRK04863 382 EARAEAAEEEVDELKSQ---LADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEL 458 (1486)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444444332 223444444455555555555555554444331 334444444444444444444
Q ss_pred HHHHHhhhhhHH
Q 001641 651 LKLKKEGRKNEF 662 (1039)
Q Consensus 651 ~qLk~~~rk~~~ 662 (1039)
..|+.++...+.
T Consensus 459 ~elE~kL~~lea 470 (1486)
T PRK04863 459 LSLEQKLSVAQA 470 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 444433333333
No 73
>PRK11637 AmiB activator; Provisional
Probab=97.24 E-value=0.15 Score=60.83 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001641 627 QLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQ 674 (1039)
Q Consensus 627 ~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q 674 (1039)
.+...+..+.......+..+..++.+|+.+....+.++..|+.+..+.
T Consensus 198 ~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 198 TLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444555566666777777766666666666544433
No 74
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.16 E-value=0.38 Score=53.71 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001641 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQ---------EAEQF---RQWKASREKELLKLKKEGRKNEFERHKLEALNQR 673 (1039)
Q Consensus 606 k~e~~~~~L~~ei~~lk~~kv~L~k~mke---------e~~~~---r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~ 673 (1039)
..|.=+..|...+..|-+-|-.|..++-. ++..+ ...-....-.|..|+.+..+-...+...++++..
T Consensus 175 EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~ 254 (310)
T PF09755_consen 175 EQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSE 254 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777777776653 11100 0001223334555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 674 QKMVLQRKTEEAAIATKRLKELLEA 698 (1039)
Q Consensus 674 q~~vL~rK~eE~~a~~krLke~Le~ 698 (1039)
.-.....+-.++...|.||+..|..
T Consensus 255 k~~~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 255 KMAQYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566777777777766554
No 75
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.15 E-value=1.5 Score=56.13 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 724 SLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 724 ~~~~Wl~~Elei~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
.+..-++.+++-+ ..+.+....+-.++..|......|..++.
T Consensus 654 ~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~ 696 (1074)
T KOG0250|consen 654 VDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEK 696 (1074)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777766 45556666566666666666666666654
No 76
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.11 E-value=1.5 Score=55.39 Aligned_cols=127 Identities=24% Similarity=0.320 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001641 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L 614 (1039)
.++.+.+.+++..++|.+.+..+|+.++.. ..+-..|+.+++-++.+|- +..-+..+.++.++...-......+..+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~-~~kf~~l~~ql~l~~~~l~--l~~~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEAQ-SQKFRDLKQQLELKLHELA--LLEKRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHhcChHhhHHHHHHHHHHHHHHH
Confidence 567888889999999999999999988533 2355567777766666664 2222344555666666666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001641 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFER 664 (1039)
Q Consensus 615 ~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei 664 (1039)
+.+|.+-....-+-+-+++.=-..-..|+..+++++..|.++.......+
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~ 803 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA 803 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH
Confidence 77776655444444444444344556677788888877777665554443
No 77
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.10 E-value=0.69 Score=55.67 Aligned_cols=145 Identities=21% Similarity=0.287 Sum_probs=79.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc--------c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 492 EHALWQNTMDKELNELNKRLEQKESEMKLFGD--------I-DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (1039)
Q Consensus 492 E~~~~q~~l~~El~eL~kqLe~kE~~~k~~~~--------~-d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~ 562 (1039)
+......++..|+.++.+.++.++..+..... . ..++--..+...+..|++++..|.+|...|...|..+.
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33445567788888888888888655433220 0 01111122445666666777777666666666666553
Q ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 563 ANSDGHTQKMQDGHTLKLKALEAQILELKKKQES--QVELLKQ-----KHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQE 635 (1039)
Q Consensus 563 ~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~--~~~l~k~-----k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee 635 (1039)
...+ ...=++.+++-++++|..+|.-++.--.. ....-+. ....+---..|+.-|.+|+++...-+++=|++
T Consensus 190 ~~ld-~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 190 KQLD-DETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKD 268 (546)
T ss_pred HHHH-HHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2222 22335566677777777666666522211 1111111 12334455677777778887777766665555
Q ss_pred HH
Q 001641 636 AE 637 (1039)
Q Consensus 636 ~~ 637 (1039)
.+
T Consensus 269 iE 270 (546)
T KOG0977|consen 269 IE 270 (546)
T ss_pred HH
Confidence 43
No 78
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=1.3 Score=54.21 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHhhcHHHHHHHH
Q 001641 737 ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMA 816 (1039)
Q Consensus 737 ~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~~~i~~l~ 816 (1039)
.++-|....+.++.-++..+...+..... . .... +.+.+.|+..+......+..+.
T Consensus 493 arikE~q~kl~~l~~Ekq~l~~qlkq~q~---a------------------~~~~---~~~~s~L~aa~~~ke~irq~ik 548 (1118)
T KOG1029|consen 493 ARIKELQEKLQKLAPEKQELNHQLKQKQS---A------------------HKET---TQRKSELEAARRKKELIRQAIK 548 (1118)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhh---h------------------ccCc---chHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777666533322 0 1111 2233556655555555566677
Q ss_pred HhhHHHHH
Q 001641 817 SQLSEAEE 824 (1039)
Q Consensus 817 ~ql~~~e~ 824 (1039)
+|+++++.
T Consensus 549 dqldelsk 556 (1118)
T KOG1029|consen 549 DQLDELSK 556 (1118)
T ss_pred HHHHHHHH
Confidence 77777743
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.02 E-value=0.26 Score=61.67 Aligned_cols=111 Identities=20% Similarity=0.204 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 001641 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQ---RKTEEAAIATKRLKELLEARKSSARENSVNS 710 (1039)
Q Consensus 634 ee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~---rK~eE~~a~~krLke~Le~~k~~~~~~~~~~ 710 (1039)
+-.+.-|.-+...|.|+-+|+.+++.++.++..|+.+-+.-...-+ ..+|.+.+++.-++| -....+...
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd-------k~~~LE~sL 610 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD-------KNQHLENSL 610 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHhh
Confidence 4445566667788899999999999999999999875421111101 123333333222222 111222111
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 711 TGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (1039)
Q Consensus 711 ~~~~~~~~~~~~~~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~ 766 (1039)
++ -.||- ++....+.|+++.+|-......+.+.|+..||..
T Consensus 611 sa-------------EtriK--ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 611 SA-------------ETRIK--LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred hH-------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11222 3445778999999999999999999999999873
No 80
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=2.1 Score=55.09 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 840 FMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALA 909 (1039)
Q Consensus 840 s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~ 909 (1039)
-+.+++..|..+...+..-...+..+...|..++.++.+....+..+......+...+-...|.|.-+=+
T Consensus 522 ~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 522 KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444455555544444444444444444444444444433
No 81
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=1.5 Score=52.39 Aligned_cols=154 Identities=19% Similarity=0.134 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEA 685 (1039)
Q Consensus 606 k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~ 685 (1039)
+.|.++..|+.++.+||.+... +.===++.++....+.+..|+|..+..+..+-..++-.++.+.+.+.--+..+.-+.
T Consensus 305 ~kEeE~e~lq~~~d~Lk~~Ie~-Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~ 383 (581)
T KOG0995|consen 305 EKEEEIEKLQKENDELKKQIEL-QGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDL 383 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777665322 211135556666667778888988888888888888888888888888888888888
Q ss_pred HHHHHHHHHH-HHHHhhhhhhhccccCCCCCCCCCCc-hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 686 AIATKRLKEL-LEARKSSARENSVNSTGYTTPTGQSN-EKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTIL 763 (1039)
Q Consensus 686 ~a~~krLke~-Le~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~L 763 (1039)
..+..||+=. .+..+...+-.+ +..+.+...... ...+..|++..- ..+++++..+..|++.+..++.-++.+
T Consensus 384 ~~l~~~i~l~~~~~~~n~~~~pe--~~~~~~~d~k~~V~~~l~el~~ei~---~~~~~~~~~~~tLq~~~~~~~~~i~E~ 458 (581)
T KOG0995|consen 384 NSLIRRIKLGIAENSKNLERNPE--RAATNGVDLKSYVKPLLKELLDEIS---EELHEAENELETLQEHFSNKASTIEEK 458 (581)
T ss_pred HHHHHHHHHHHHHHhccCCcCCc--cCccccccchhHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888654 222211000000 000011111111 123344444333 345667777777777776666666555
Q ss_pred Hh
Q 001641 764 KQ 765 (1039)
Q Consensus 764 k~ 765 (1039)
++
T Consensus 459 ~~ 460 (581)
T KOG0995|consen 459 IQ 460 (581)
T ss_pred HH
Confidence 44
No 82
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.91 E-value=1.8 Score=52.94 Aligned_cols=304 Identities=19% Similarity=0.185 Sum_probs=171.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 572 MQDGHTLKLKALEAQILELKKKQESQVELL--------------KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAE 637 (1039)
Q Consensus 572 Lke~~ekkL~eLE~el~~Lkkk~~~~~~l~--------------k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~ 637 (1039)
.+++|..-+.+|..=-.+|.+-+.+..-+. ..-.-...++..|..||..+|......--.--+-.+
T Consensus 121 ~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAee 200 (522)
T PF05701_consen 121 AREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEE 200 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566776666666655555544444433322 233345566777888888888777663221122222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCC
Q 001641 638 QFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPT 717 (1039)
Q Consensus 638 ~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~ 717 (1039)
+...-...++.+...++..+...+.++..|..+. .....|..+...+...+..|+..|..-+......+....+ ..
T Consensus 201 e~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~---~~ 276 (522)
T PF05701_consen 201 ERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKE---KS 276 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhh---hh
Confidence 3333344556666777777777788888887755 3444566677777777777777766554422111100000 00
Q ss_pred CCCchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCcccccCChhHHHH
Q 001641 718 GQSNEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARME 796 (1039)
Q Consensus 718 ~~~~~~~~~~Wl~~Elei~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~ 796 (1039)
. .-...-.=+..||+-. ..+..+......+...=..|..||...|.
T Consensus 277 ~--~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~------------------------------- 323 (522)
T PF05701_consen 277 S--ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKE------------------------------- 323 (522)
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 0 0001111133344433 33444444444444433344444433332
Q ss_pred HHHHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 797 RIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQL 876 (1039)
Q Consensus 797 ~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~ 876 (1039)
.+..+.+.....+..+..|..+|..+-.+..+..... -..-..+.+....|+.+...+-.++........++..++..+
T Consensus 324 el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e-~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~ 402 (522)
T PF05701_consen 324 ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE-EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEA 402 (522)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444444445555555444433222111111 011135677888898888999899988888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001641 877 NDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (1039)
Q Consensus 877 ~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 913 (1039)
......+...+.++.....+.......-+.+|.....
T Consensus 403 e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~ 439 (522)
T PF05701_consen 403 EQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKA 439 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888877777777777766544
No 83
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.69 E-value=4.6 Score=54.53 Aligned_cols=36 Identities=25% Similarity=0.511 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (1039)
Q Consensus 597 ~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~m 632 (1039)
+..+.+...+.+.++..++.++.+++.+..+|..++
T Consensus 499 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 499 EQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555566666777777788888888888888877776
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.65 E-value=1.8 Score=53.31 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=12.4
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
+..+-+|++|||||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34456789999998766
No 85
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.64 E-value=0.62 Score=50.99 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~ 612 (1039)
.++++..++..+..|+.+.+.+...+..++.. ..+...-.+.|+.+|..|+.++... ...-....+.-.+++..+.
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~-~~~~~~re~~~e~~i~~L~~~lkea---E~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVGNNLKSLEAS-EEKASEREDEYEEKIRDLEEKLKEA---ENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777777766422 2233444567777777777444333 3333344455556666677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001641 613 RLQAEIQSIKAQKVQLQ 629 (1039)
Q Consensus 613 ~L~~ei~~lk~~kv~L~ 629 (1039)
.|.++|...|..+..+.
T Consensus 208 ~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 208 RLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777766666665533
No 86
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.57 E-value=3.4 Score=53.12 Aligned_cols=91 Identities=24% Similarity=0.201 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQ---AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLK 652 (1039)
Q Consensus 576 ~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~---~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~q 652 (1039)
++..|+.++ ...++++..+..+..--.+...++..+. .+|+.-..........+++|.+.+++-=..+.+|..+
T Consensus 279 ~~~ql~~~~---~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~ 355 (1074)
T KOG0250|consen 279 VERQLNNQE---EEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND 355 (1074)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345555555 3334444444444444444445555555 3333333344445556677777777777777777777
Q ss_pred HHHhhhhhHHHHHHHHH
Q 001641 653 LKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 653 Lk~~~rk~~~ei~~L~~ 669 (1039)
++.+.+-.++.|.+++.
T Consensus 356 ~~~~~~~~~n~i~~~k~ 372 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKK 372 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666653
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.56 E-value=1.2 Score=54.92 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHK------ 606 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k------ 606 (1039)
+.+++..+..+...++.+.+.+..++.++.. -.+.|+..|+.++.++..++..........+.-..
T Consensus 218 l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~--------~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~ 289 (562)
T PHA02562 218 KQNKYDELVEEAKTIKAEIEELTDELLNLVM--------DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPT 289 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4455555555555555555555555554421 12446666777777777766655554444332211
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 607 -------SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQ 638 (1039)
Q Consensus 607 -------~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~ 638 (1039)
....+..|.++|.+++.+...+...+.+-.+.
T Consensus 290 C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~ 328 (562)
T PHA02562 290 CTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEI 328 (562)
T ss_pred CCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14566666666666666666655555443333
No 88
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.40 E-value=4 Score=50.44 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 725 ~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
......+++||+-.+.-.+....+-+.+-+.+-+|++.|.-
T Consensus 486 Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 486 RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999988754
No 89
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.37 E-value=4.3 Score=50.44 Aligned_cols=167 Identities=17% Similarity=0.247 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHH
Q 001641 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKL 580 (1039)
Q Consensus 501 ~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL 580 (1039)
...+.+|...|..+...+......+.... ....-..|+.++..|.+|++.|..++..... -...+..+....+.+|
T Consensus 49 ~~~V~eLE~sL~eLk~q~~~~~~~~~pa~---pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~-~ne~Ls~L~~EqEerL 124 (617)
T PF15070_consen 49 ISRVQELERSLSELKNQMAEPPPPEPPAG---PSEVEQQLQAEAEHLRKELESLEEQLQAQVE-NNEQLSRLNQEQEERL 124 (617)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCcccccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34566666666666555544332221110 0112245666677777777777766654321 2235567777788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001641 581 KALEAQILELKKKQESQVELLK--------------QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKAS- 645 (1039)
Q Consensus 581 ~eLE~el~~Lkkk~~~~~~l~k--------------~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~- 645 (1039)
.+||..+.+++....++.+|+. ....+-.++..|++-+..|-..+..|.-++..|..-.++....
T Consensus 125 ~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl 204 (617)
T PF15070_consen 125 AELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKL 204 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 9999888888877666665543 2333333334444433334334433333443333333332222
Q ss_pred --HHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001641 646 --REKELLKLKKEGRKNEFERHKLEALN 671 (1039)
Q Consensus 646 --~~kEi~qLk~~~rk~~~ei~~L~~~~ 671 (1039)
.+-++-.++....-+..|+..|+.+.
T Consensus 205 ~~l~~~l~~~~e~le~K~qE~~~Lq~q~ 232 (617)
T PF15070_consen 205 GELQEKLHNLKEKLELKSQEAQSLQEQR 232 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22234445555555556666666533
No 90
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.35 E-value=6.1 Score=52.02 Aligned_cols=379 Identities=21% Similarity=0.197 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHH
Q 001641 500 MDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLK 579 (1039)
Q Consensus 500 l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekk 579 (1039)
++.++.++.+.|+..+.....+. ++..++..|+.+...+.++...+...+......++..+.++-..++++
T Consensus 242 ~e~e~~~~~~~i~ei~~~~~el~---------k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~ 312 (1294)
T KOG0962|consen 242 LENELGPIEAKIEEIEKSLKELE---------KLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEER 312 (1294)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHH
Confidence 34455555555555554443332 123444555555555555555555555433334444555555445555
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q 001641 580 LKALEAQILELKKK----QESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK---------------------- 633 (1039)
Q Consensus 580 L~eLE~el~~Lkkk----~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mk---------------------- 633 (1039)
+-+++..+.+++++ ..++..+...|.+++.....++.++...+..+..+=..+.
T Consensus 313 ~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 392 (1294)
T KOG0962|consen 313 LEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKK 392 (1294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHH
Confidence 54444444433322 1456667777778888888887777766655555411111
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001641 634 --------------QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEAL---NQR-QKMVLQRKTEEAAIATKRLKEL 695 (1039)
Q Consensus 634 --------------ee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~---~~~-q~~vL~rK~eE~~a~~krLke~ 695 (1039)
....++...-..++-.+..++...+++..++...... ... ...-+..+.........+++..
T Consensus 393 ~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~k~l~~~~~~~e~s~~~~~~~ 472 (1294)
T KOG0962|consen 393 DFRNLILERFGGLEDDIKQRKKDIAELETNALDLIKEITDREVSLEAQKRIKDEIKKLESKGLKDKSFQYEDSTDDLKKL 472 (1294)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhHHHH
Confidence 1122222233334444555555666666655444431 111 2223455555556666677777
Q ss_pred HHHHhhhhhhhccccCCCCCCCCCCc----------hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 696 LEARKSSARENSVNSTGYTTPTGQSN----------EKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 696 Le~~k~~~~~~~~~~~~~~~~~~~~~----------~~~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
+++.+.+.+..+........+..... -....+-++++++++....+....++-+.........++..++.
T Consensus 473 ~~r~~~~~~~~~s~~~~~~~~~l~e~i~~~q~~~~~l~~~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~ 552 (1294)
T KOG0962|consen 473 DERLKEAERLLESAEKNNDELALKEKIAEKQNEMAQLEIQKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKS 552 (1294)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77655555443322111000000000 01123345555555555555555666666666666667666654
Q ss_pred hcccccCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHH
Q 001641 766 VDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAK 845 (1039)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk 845 (1039)
...... +.....++.. . .+++......+.-+..|++.+..+ ...+...+..+.....++.+.+
T Consensus 553 ~~~~~~------------~~~~~~~~~~-~---~~le~~~~~~~~~~~~~~ek~~~l-~~~~~~~e~~~~~~~~~~e~~~ 615 (1294)
T KOG0962|consen 553 RLSDEK------------GRAIEFPLTN-D---RSLEKELHKLSKEIQEMEERLRML-QLEEQSLEINRNGIRKDLEDRK 615 (1294)
T ss_pred hcchhh------------hhhhccCccc-h---hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHH
Confidence 221100 0111111110 0 345555555555666676666665 3333444444555555555321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 846 NLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALAS 910 (1039)
Q Consensus 846 ~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~ 910 (1039)
. ..+......+...-.-+.++-..+..+..++......+.-|+--...|+.++-++-..
T Consensus 616 ~------e~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~ 674 (1294)
T KOG0962|consen 616 E------EELKSKEFFLKDESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACRS 674 (1294)
T ss_pred H------HHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhc
Confidence 1 1112222222333333444455555566666666677777777788888888777763
No 91
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.27 E-value=4.6 Score=49.78 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 611 AKRLQAEIQSIKAQKVQLQNKIKQEAE 637 (1039)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L~k~mkee~~ 637 (1039)
...+-+|+.+.+.+...+.+|.++++-
T Consensus 185 ~~tkl~e~~~en~~le~k~~k~~e~~~ 211 (1265)
T KOG0976|consen 185 FQTKLAEANREKKALEEKLEKFKEDLI 211 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555555555555555555543
No 92
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=6.4 Score=50.91 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=10.1
Q ss_pred eccCCCCccccc
Q 001641 87 YGQTGSGKTYTM 98 (1039)
Q Consensus 87 YGqTGSGKTyTm 98 (1039)
.||.||||+-.+
T Consensus 114 vGPNGSGKSNVI 125 (1293)
T KOG0996|consen 114 VGPNGSGKSNVI 125 (1293)
T ss_pred ECCCCCCchHHH
Confidence 499999998776
No 93
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.18 E-value=3.2 Score=47.15 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=25.8
Q ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 729 LEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 729 l~~Elei~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
+..|+.-+ ..+......|..|+...-.|..|++.-++
T Consensus 267 le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 267 LEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44444444 56677777788888888888888887665
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.17 E-value=3.1 Score=48.70 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 001641 503 ELNELNKRLE 512 (1039)
Q Consensus 503 El~eL~kqLe 512 (1039)
++.+++..|.
T Consensus 67 ~lk~~e~~i~ 76 (420)
T COG4942 67 QLKSLETEIA 76 (420)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.16 E-value=0.67 Score=50.36 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1039)
Q Consensus 577 ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~ 656 (1039)
+.....++.+|.+++.+...-...+ ...+.+.+...|..||+..+.+.+.|...| ..-.......++++.-|+.+
T Consensus 58 e~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el----~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 58 ENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDEL----AELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333322222 444455555555566655555555533322 22333333444555555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 657 GRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1039)
Q Consensus 657 ~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le 697 (1039)
..+.+..+...+..-...-..+.++...+......|++.+.
T Consensus 133 ~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 133 LERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55555555555554444444445555555555555555443
No 96
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=4.4 Score=48.09 Aligned_cols=95 Identities=21% Similarity=0.323 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cccccc--
Q 001641 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHH--FGKKIMELEEEKRIVQQERDRLLAEIENLAA-----NSDGHT-- 569 (1039)
Q Consensus 499 ~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~--ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~-----~~~~~~-- 569 (1039)
.+..++.-|.+.|++--++.-.........++++ +..++.+|+.+...+..|.|.+.+.+..... ..++-.
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E 91 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE 91 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 3456666666666665443322222333444333 6677778888888888888888887766410 001000
Q ss_pred -------hhhhhhHHHHHHHHHHHHHHHHHH
Q 001641 570 -------QKMQDGHTLKLKALEAQILELKKK 593 (1039)
Q Consensus 570 -------~KLke~~ekkL~eLE~el~~Lkkk 593 (1039)
.--.+.|-.++-+||.+|..++..
T Consensus 92 esLLqESaakE~~yl~kI~eleneLKq~r~e 122 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQKILELENELKQLRQE 122 (772)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 011355778888888776666543
No 97
>PRK11281 hypothetical protein; Provisional
Probab=96.11 E-value=6.6 Score=52.00 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 647 EKELLKLKKEGRKNEFE---RHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1039)
Q Consensus 647 ~kEi~qLk~~~rk~~~e---i~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~ 699 (1039)
+-|.+.|+-+..-.+.+ -..++...+.|...+..+++........|++.+-.+
T Consensus 198 ~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k 253 (1113)
T PRK11281 198 QAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK 253 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444 334555777777888888888888888887777553
No 98
>PRK01156 chromosome segregation protein; Provisional
Probab=95.92 E-value=9.2 Score=50.10 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 856 AETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMR 900 (1039)
Q Consensus 856 ~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~ 900 (1039)
...+.....++.++.+++..+..+...+..+..+...+..++..+
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~ 721 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDI 721 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444455555666666666667777777766666555555444333
No 99
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.0046 Score=72.39 Aligned_cols=94 Identities=24% Similarity=0.448 Sum_probs=63.6
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchh----HHHHHHHHH
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIP----QVMNALFNK 121 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giip----r~~~~LF~~ 121 (1039)
..|..-.-|.|.+.|. ..+..||+++-.|.-.-++ .|.|||||||||..-...-..|-+|- -....||+.
T Consensus 3 ~~F~l~s~f~PaGDQP-----~AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 3 KPFKLHSPFKPAGDQP-----EAIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CceEeccCCCCCCCcH-----HHHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHH
Confidence 3577777888877643 3467888888777655544 59999999999932111111222221 246678887
Q ss_pred HHhccccceEEEEeehhhhhhhHH
Q 001641 122 IETLRHQMEFQLHVSFIEILKEEV 145 (1039)
Q Consensus 122 i~~~~~~~~~~v~vS~~EIYnE~v 145 (1039)
....-++..+...|||+..|+-+-
T Consensus 77 fk~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 77 FKEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HHHhCcCcceEEEeeeccccCccc
Confidence 777777778888999999887653
No 100
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.73 E-value=11 Score=49.75 Aligned_cols=35 Identities=9% Similarity=0.255 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 666 KLEALNQRQKMVLQRKTEEAAIATKRLKELLEARK 700 (1039)
Q Consensus 666 ~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k 700 (1039)
.++...+.|...++.+++.+.+....|++.+-.++
T Consensus 201 ~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR 235 (1109)
T PRK10929 201 NRQELARLRSELAKKRSQQLDAYLQALRNQLNSQR 235 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446667777788888888888888877776543
No 101
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.68 E-value=0.69 Score=50.28 Aligned_cols=165 Identities=25% Similarity=0.292 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 577 TLKLKALEAQILELKKKQES--------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREK 648 (1039)
Q Consensus 577 ekkL~eLE~el~~Lkkk~~~--------~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~k 648 (1039)
-++|++||.++..|+++.+. .+-|.|.|+|.+.+-. ++..||+-.-.| ...-...+|
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~----e~s~LkREnq~l-----------~e~c~~lek 81 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKN----EYSALKRENQSL-----------MESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh----hhhhhhhhhhhH-----------HHHHHHHHH
Confidence 47899999999999977665 3445555555554432 333333322222 221122222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCC-CCCchHHHHH
Q 001641 649 ELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPT-GQSNEKSLQK 727 (1039)
Q Consensus 649 Ei~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 727 (1039)
--..|--++.-++..+.-|+ .|-+-.++.++.+...++|+|..||+-..+...........++|- .....-.-..
T Consensus 82 ~rqKlshdlq~Ke~qv~~lE----gQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q 157 (307)
T PF10481_consen 82 TRQKLSHDLQVKESQVNFLE----GQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQ 157 (307)
T ss_pred HHHHhhHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhh
Confidence 22224444444555555554 344556778899999999999999975444332221111111110 0000000000
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 728 WLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 728 Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
|- .-...+|.+..|..-.+.|+.|+.|+..|.-
T Consensus 158 ~~-----~~sk~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 158 YY-----SDSKYEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred hh-----hhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 10 1134667888899999999999999999874
No 102
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.64 E-value=6.4 Score=46.19 Aligned_cols=47 Identities=32% Similarity=0.437 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001641 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (1039)
Q Consensus 578 kkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~ 627 (1039)
++|++...+|..+.++... ..+..++++..++.+..+|..+..+..+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~---~~~~~~kL~~~lk~~e~~i~~~~~ql~~ 84 (420)
T COG4942 38 KQLKQIQKEIAALEKKIRE---QQDQRAKLEKQLKSLETEIASLEAQLIE 84 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666555555544433 3344556666666666666666666555
No 103
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.15 E-value=11 Score=45.92 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=23.0
Q ss_pred CCCCCCCccCcccccccccCcccCCccch
Q 001641 932 SGPLSPVSLPAPKQLKFTPGIVNGSVRES 960 (1039)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1039)
..+.++.+++.+.-.+++|...++.+..+
T Consensus 450 ~~~~~~~~v~e~s~~~~~p~~~~~~~~s~ 478 (629)
T KOG0963|consen 450 REEGSGQPVPESSIMGGGPSLPNGGVLSR 478 (629)
T ss_pred hcccCCcCCCcccccCCCCCccccccccc
Confidence 34456888889999999999988887766
No 104
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.11 E-value=2.9 Score=44.36 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 647 EKELLKLKKEGRKNEFERHKLEA-------LNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1039)
Q Consensus 647 ~kEi~qLk~~~rk~~~ei~~L~~-------~~~~q~~vL~rK~eE~~a~~krLke~Le~~ 699 (1039)
.+++..+..++...+..|..|+. .+.+|-+...+|+.++...++.|.+.+..-
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L 183 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRL 183 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555444443 566777777788888877777777766543
No 105
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.99 E-value=0.02 Score=72.57 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 001641 747 EKQSQVQAALADELTILKQV 766 (1039)
Q Consensus 747 e~l~e~R~~l~~El~~Lk~~ 766 (1039)
.++...+.-..+|+..||+.
T Consensus 402 ~RLerq~~L~~kE~d~LR~~ 421 (722)
T PF05557_consen 402 RRLERQKALATKERDYLRAQ 421 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455566777777763
No 106
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.94 E-value=12 Score=45.22 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=20.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhc
Q 001641 494 ALWQNTMDKELNELNKRLEQKESEMKLFG 522 (1039)
Q Consensus 494 ~~~q~~l~~El~eL~kqLe~kE~~~k~~~ 522 (1039)
......|.+.+..|+..|+.||++++.+.
T Consensus 286 ~~k~~~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 286 KSKKQHMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777888888888887777665
No 107
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.93 E-value=12 Score=45.45 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHH
Q 001641 646 REKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSL 725 (1039)
Q Consensus 646 ~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1039)
++++|++|-....+-+.-...+...+..|-+-|-++.......+..|++.|..+. |
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~s-----------D------------- 345 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRS-----------D------------- 345 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------c-------------
Confidence 7777777777777777777777777777777777777777777777777776541 2
Q ss_pred HHHHHHHHHHHHhHH-----------HHHHHHHHHH-HHHHHHHHHHHHHHh
Q 001641 726 QKWLEHELEVSANVH-----------EVRFKYEKQS-QVQAALADELTILKQ 765 (1039)
Q Consensus 726 ~~Wl~~Elei~~~~~-----------e~~~~~e~l~-e~R~~l~~El~~Lk~ 765 (1039)
..=+-.||.|+..++ +.-..++.|+ +-.++|..|++.||-
T Consensus 346 YeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~ 397 (629)
T KOG0963|consen 346 YEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRV 397 (629)
T ss_pred HHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhc
Confidence 111666777773221 2223455554 446889999999986
No 108
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.55 E-value=20 Score=45.98 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=16.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001641 571 KMQDGHTLKLKALEAQILELKKKQES 596 (1039)
Q Consensus 571 KLke~~ekkL~eLE~el~~Lkkk~~~ 596 (1039)
.-+..++.++++|+++|..++++..+
T Consensus 780 d~~~~re~rlkdl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 780 DAKANRERRLKDLEKEIKTAKQRAEE 805 (1174)
T ss_pred HhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 33455677777777777666655444
No 109
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.47 E-value=17 Score=45.03 Aligned_cols=241 Identities=20% Similarity=0.256 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhh---h
Q 001641 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQ---D 574 (1039)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLk---e 574 (1039)
..++.++++|..+++..+..++.+. ..... ..+.+.+.+.+...++++.+ +......+-.+.+.+..||. +
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~-~~~~q----~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ni~kL~~~v~ 404 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLK-SSLKQ----LEEELEEKEAENEELEEELK-LKKKTVELLPDAEENIAKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4456677777777777777766654 11111 12333333334444433333 22222222223333444332 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--H
Q 001641 575 GHTLKLKALEAQILELKKKQESQVELLK-QKHKSD-------EAAKRLQAEIQSIK---AQKVQLQNKIKQEAEQFR--Q 641 (1039)
Q Consensus 575 ~~ekkL~eLE~el~~Lkkk~~~~~~l~k-~k~k~e-------~~~~~L~~ei~~lk---~~kv~L~k~mkee~~~~r--~ 641 (1039)
....++..|..+-...+....+.-+-++ .....+ .+++.++.++..+. +.|-++.+++..+.++.- -
T Consensus 405 ~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~ 484 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV 484 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3344555555444444433333222222 111111 22333333333332 334444444444443321 2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCC
Q 001641 642 WKASREKELLKLKKEGRKNEFERHKLEA---LNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTG 718 (1039)
Q Consensus 642 ~~~~~~kEi~qLk~~~rk~~~ei~~L~~---~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~ 718 (1039)
-+...-+-|...=+..+|++.+|.+... .-+++-|.+.-|.+.-.+...++ + =+.+ ++|
T Consensus 485 ~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEl---i--frdA-------KkD------ 546 (594)
T PF05667_consen 485 NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDEL---I--FRDA-------KKD------ 546 (594)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---H--HHHh-------hcC------
Confidence 3445555666666666777777766664 22333333444444433333332 0 0111 111
Q ss_pred CCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 719 QSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTIL 763 (1039)
Q Consensus 719 ~~~~~~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~L 763 (1039)
.......+-|..--+....+.+.=..++..+-.=..|+..++..
T Consensus 547 -e~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e 590 (594)
T PF05667_consen 547 -EAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDTE 590 (594)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 01123344455555555555555555555555545555555443
No 110
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.20 E-value=20 Score=44.57 Aligned_cols=59 Identities=22% Similarity=0.182 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 001641 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSV 708 (1039)
Q Consensus 644 ~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~ 708 (1039)
..-+.+|.+|+++.......|..|.-+... -+++++...+.-|-+.++++..++...++
T Consensus 252 ~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~------~~~~~i~~~Id~Lyd~lekE~~A~~~vek 310 (569)
T PRK04778 252 LDIEKEIQDLKEQIDENLALLEELDLDEAE------EKNEEIQERIDQLYDILEREVKARKYVEK 310 (569)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcChHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888777777654333 34556666667777777777776655543
No 111
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.16 E-value=3.6 Score=47.23 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK 654 (1039)
Q Consensus 610 ~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk 654 (1039)
-|..|+.||..++.+...-++.-.++..+++..+....-|..+|.
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQ 298 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 355666677777666666556656666666555555554544443
No 112
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.02 E-value=9.3 Score=41.74 Aligned_cols=124 Identities=21% Similarity=0.346 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHH
Q 001641 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (1039)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e 577 (1039)
.++..++..+++.+..++.++..+. .++..++.++.++..-++.....+... + -.
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le------------~qv~~~e~ei~~~r~r~~~~e~kl~~v--------~-----~~ 88 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLE------------NQVSQLESEIQEIRERIKRAEEKLSAV--------K-----DE 88 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcc--------c-----cH
Confidence 3444555555555555554443322 444444444444444444444333211 1 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1039)
Q Consensus 578 kkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~ 656 (1039)
..+.+|+.++..+++... ..+.++..+.+++..+......|..+|...-..+...+...+-++..++++
T Consensus 89 ~e~~aL~~E~~~ak~r~~----------~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~ 157 (239)
T COG1579 89 RELRALNIEIQIAKERIN----------SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157 (239)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777766666654333 233444444444444444444444444444444444444444455444433
No 113
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.87 E-value=14 Score=41.72 Aligned_cols=57 Identities=32% Similarity=0.374 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001641 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSAR 704 (1039)
Q Consensus 644 ~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~ 704 (1039)
.....||+.-..+..+.+.||..|.+ |-.-|+++....++.+..|...|..-|.+.+
T Consensus 216 a~LseELa~k~Ee~~rQQEEIt~Lls----qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~ 272 (306)
T PF04849_consen 216 ASLSEELARKTEENRRQQEEITSLLS----QIVDLQQRCKQLAAENEELQQHLQASKESQR 272 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34566666667777777777777764 4555778888888888888888877665553
No 114
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.86 E-value=13 Score=41.42 Aligned_cols=225 Identities=18% Similarity=0.164 Sum_probs=126.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001641 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQ 679 (1039)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~ 679 (1039)
+...|-....+-+.+-++|.-+|..-.. |.+.++-.+.-+.+--..+..|-++|+
T Consensus 15 idtik~q~qekE~ky~ediei~Kekn~~-------------------------Lqk~lKLneE~ltkTi~qy~~QLn~L~ 69 (305)
T PF14915_consen 15 IDTIKNQNQEKEKKYLEDIEILKEKNDD-------------------------LQKSLKLNEETLTKTIFQYNGQLNVLK 69 (305)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 3444445555555666666666665555 555555555556666667788888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Q 001641 680 RKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALAD 758 (1039)
Q Consensus 680 rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~Elei~-~~~~e~~~~~e~l~e~R~~l~~ 758 (1039)
- .+.+|.-.|+.+|..+.. |.-|+|-. .++.-|-...+.-+. ++..-
T Consensus 70 a-------ENt~L~SkLe~EKq~ker-----------------------LEtEiES~rsRLaaAi~d~dqsq~--skrdl 117 (305)
T PF14915_consen 70 A-------ENTMLNSKLEKEKQNKER-----------------------LETEIESYRSRLAAAIQDHDQSQT--SKRDL 117 (305)
T ss_pred H-------HHHHHhHHHHHhHHHHHH-----------------------HHHHHHHHHHHHHHHHhhHHHHHh--hHHHH
Confidence 3 445555666666655432 44444443 233333333222221 22333
Q ss_pred HHHHHHhhcccccCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchh
Q 001641 759 ELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHL 838 (1039)
Q Consensus 759 El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~ 838 (1039)
|++-.+...+ |.+ +- +-.+..++.|... ..-|.+||+.++.+.. +-+..+...
T Consensus 118 elafqr~rdE------------w~~-----lq-dkmn~d~S~lkd~-------ne~LsQqLskaesK~n--sLe~elh~t 170 (305)
T PF14915_consen 118 ELAFQRARDE------------WVR-----LQ-DKMNSDVSNLKDN-------NEILSQQLSKAESKFN--SLEIELHHT 170 (305)
T ss_pred HHHHHHHhhH------------HHH-----HH-HHhcchHHhHHHH-------hHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4433333111 110 00 1223333444332 2345567777755442 222222332
Q ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 839 -RFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIAL 908 (1039)
Q Consensus 839 -~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l 908 (1039)
.++.|---+|..++..+..+.|+.++.+.-.+--+.++..-.+.-.-++.++..++.++....|.+--+-
T Consensus 171 rdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 171 RDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345556678999999999999999999888888888888887777888888888888887777654443
No 115
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.86 E-value=14 Score=41.69 Aligned_cols=136 Identities=26% Similarity=0.316 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~ 612 (1039)
+.+|+..|++++..|..|...|..+-.+. .++.+.|-.+.-+.|.+...+|..|..+. .+.-....
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~----EekEqqLv~dcv~QL~~An~qia~LseEL----------a~k~Ee~~ 230 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTETDTY----EEKEQQLVLDCVKQLSEANQQIASLSEEL----------ARKTEENR 230 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhc----cHHHHHHHHHHHHHhhhcchhHHHHHHHH----------HHHHHHHH
Confidence 34677777777777777766666554433 22334444444455555555555555333 33345677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRL 692 (1039)
Q Consensus 613 ~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krL 692 (1039)
..++||..|-++.|+|.++.|.=........ .-+...|.-.+.-..|++. |+.|..|..+.....
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~----q~L~~ske~Q~~L~aEL~e-----------lqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQ----QHLQASKESQRQLQAELQE-----------LQDKYAECMAMLHEA 295 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 7889999999999999888887665443321 1222223333333444444 446666766665555
Q ss_pred HHHHH
Q 001641 693 KELLE 697 (1039)
Q Consensus 693 ke~Le 697 (1039)
++.|-
T Consensus 296 QEElk 300 (306)
T PF04849_consen 296 QEELK 300 (306)
T ss_pred HHHHH
Confidence 55544
No 116
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.83 E-value=0.017 Score=73.11 Aligned_cols=28 Identities=43% Similarity=0.534 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIEN 560 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~ 560 (1039)
+.+++..|+.+...+..|++.|.+.+.+
T Consensus 396 L~ek~~~l~~eke~l~~e~~~L~e~~ee 423 (713)
T PF05622_consen 396 LEEKLEALEEEKERLQEERDSLRETNEE 423 (713)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666554443
No 117
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.75 E-value=18 Score=42.55 Aligned_cols=123 Identities=25% Similarity=0.236 Sum_probs=78.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001641 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMV 677 (1039)
Q Consensus 598 ~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~v 677 (1039)
+...|.-+.+..+-..|+-++..||+-.|.|+-+-..|.++.-. ---.-+.+.+-+-+++.||.+|+.
T Consensus 400 a~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnk----svsqclEmdk~LskKeeeverLQ~-------- 467 (527)
T PF15066_consen 400 ANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNK----SVSQCLEMDKTLSKKEEEVERLQQ-------- 467 (527)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh----HHHHHHHHHHHhhhhHHHHHHHHH--------
Confidence 33444444555666788888999999999988766555543222 111234467778888888888874
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001641 678 LQRKTEEAA-IATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAAL 756 (1039)
Q Consensus 678 L~rK~eE~~-a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l 756 (1039)
|+.+.|.|. +++.+||..- ..+|-|.+.-.+|...+=..-++.|.+|
T Consensus 468 lkgelEkat~SALdlLkrEK--------------------------------e~~EqefLslqeEfQk~ekenl~ERqkL 515 (527)
T PF15066_consen 468 LKGELEKATTSALDLLKREK--------------------------------ETREQEFLSLQEEFQKHEKENLEERQKL 515 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666777766 6666665422 2345555544556666556666777777
Q ss_pred HHHHHHHH
Q 001641 757 ADELTILK 764 (1039)
Q Consensus 757 ~~El~~Lk 764 (1039)
-..+++|=
T Consensus 516 Ks~leKLv 523 (527)
T PF15066_consen 516 KSRLEKLV 523 (527)
T ss_pred HHHHHHHH
Confidence 77777663
No 118
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=93.66 E-value=0.9 Score=38.84 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 844 AKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVK 895 (1039)
Q Consensus 844 Ak~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~ 895 (1039)
||..| ...+...+.....++++|+|...++.+|...+..++.++.++..
T Consensus 12 akQ~~---~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 12 AKQAI---QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777 88888899999999999999999999999999999999888753
No 119
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.65 E-value=28 Score=44.49 Aligned_cols=31 Identities=32% Similarity=0.301 Sum_probs=21.0
Q ss_pred hHHHHHHHHhhhcccccchhccHHHHHHHHH
Q 001641 819 LSEAEERERALVGRGRWNHLRFMGDAKNLLQ 849 (1039)
Q Consensus 819 l~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk 849 (1039)
|+.++...++...+.-.+.|.++.+-.+-++
T Consensus 490 l~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k 520 (1200)
T KOG0964|consen 490 LSRAEKNLRATMNRSVANGIDSVRKIKEELK 520 (1200)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 3355555666667777788888877777665
No 120
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.64 E-value=0.019 Score=72.63 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHhhcHHHHHHHHHhhHHH
Q 001641 799 ASLENMLNMSSKALVEMASQLSEA 822 (1039)
Q Consensus 799 ~~Le~~~~~~~~~i~~l~~ql~~~ 822 (1039)
..|+......+..+..+++++.++
T Consensus 498 ~~Le~~~~~~~~~~~~lq~qle~l 521 (713)
T PF05622_consen 498 EKLEEENREANEKILELQSQLEEL 521 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666655
No 121
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.55 E-value=0.02 Score=72.54 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 864 EKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAV 904 (1039)
Q Consensus 864 ~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~ 904 (1039)
.++..+..++..+..|++.+.-+..++.-|-.+++.|+.-.
T Consensus 389 ~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 389 ELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33333444444444455555555555555555555555443
No 122
>PRK09039 hypothetical protein; Validated
Probab=93.31 E-value=9.7 Score=44.12 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001641 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (1039)
Q Consensus 532 ~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~ 611 (1039)
.++..+.+|+.+...++.+|..|.......... ...-+.++..|+.+|..++..- ...-.++
T Consensus 78 ~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~--------~~~~~~~~~~l~~~L~~~k~~~----------se~~~~V 139 (343)
T PRK09039 78 DLQDSVANLRASLSAAEAERSRLQALLAELAGA--------GAAAEGRAGELAQELDSEKQVS----------ARALAQV 139 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------cchHHHHHHHHHHHHHHHHHHH----------HHhhHHH
Confidence 367889999999999999999888876632100 0122344444443333333222 2233457
Q ss_pred HHHHHHHHHHHHHHHH
Q 001641 612 KRLQAEIQSIKAQKVQ 627 (1039)
Q Consensus 612 ~~L~~ei~~lk~~kv~ 627 (1039)
..|+.+|..|+.|...
T Consensus 140 ~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 140 ELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778888888888544
No 123
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.27 E-value=0.045 Score=60.69 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=28.8
Q ss_pred cchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 68 CVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 68 ~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.+.|+|..+.+--++.|+..|+||||||+||
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 3678899999999999999999999999999
No 124
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.19 E-value=31 Score=43.65 Aligned_cols=52 Identities=23% Similarity=0.246 Sum_probs=31.6
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 371 VVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHE 430 (1039)
Q Consensus 371 vvN~d~~~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~en~~L~~eL~e 430 (1039)
..+.|+....+..+..++..+...+. ....+.+..+.+++..+..|.-++.+
T Consensus 325 ~sqkd~~~~~~~~~~~e~~~~~~~l~--------~~~~ear~~~~q~~~ql~~le~~~~e 376 (980)
T KOG0980|consen 325 ASQKDPRELQIEQLSREVAQLKAQLE--------NLKEEARRRIEQYENQLLALEGELQE 376 (980)
T ss_pred cccCChhhHHHHHHHHHHHHHhhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666677777777777777663 33444555666666666655555543
No 125
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.13 E-value=0.034 Score=60.07 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=27.8
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..||||.-+..+ + +...|.. +..+.+.--..|| .+|-||++|+||||-|
T Consensus 3 ~~~tFdnfv~g~-~-N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVGE-S-NELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--TT-T-THHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHH
T ss_pred CCCccccCCcCC-c-HHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHH
Confidence 369999987433 2 3444432 3333333111233 4788999999999987
No 126
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.07 E-value=37 Score=44.14 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 663 ERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1039)
Q Consensus 663 ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le 697 (1039)
.|..|+..+..-.+.|-+|--|+.-.++|+...|.
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 36666666777777788888888888888776654
No 127
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.81 E-value=17 Score=39.71 Aligned_cols=87 Identities=16% Similarity=0.241 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 796 ERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQ 875 (1039)
Q Consensus 796 ~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k 875 (1039)
..|..|++.+....+.+..|.-.-..+..++. ....-++.|-.-+.++.+..-..+..+.-|+..
T Consensus 141 ~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~---------------~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~ 205 (237)
T PF00261_consen 141 SKIKELEEELKSVGNNLKSLEASEEKASERED---------------EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKE 205 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444433321 123334444555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001641 876 LNDLVALLKQSEAQRKELVKQQ 897 (1039)
Q Consensus 876 ~~el~~~l~~~~~~~~~l~~~~ 897 (1039)
++.|+..|......+..+..++
T Consensus 206 id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 206 IDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444433
No 128
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.79 E-value=10 Score=38.33 Aligned_cols=81 Identities=22% Similarity=0.325 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHH
Q 001641 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL 578 (1039)
Q Consensus 499 ~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ek 578 (1039)
.+...+..++.....+|.++..+. .++..|+.++..++.....+...+.... +...-.+.+.+
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~------------~K~~~lE~eld~~~~~l~~~k~~lee~~-----~~~~~~E~l~r 80 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQ------------KKNQQLEEELDKLEEQLKEAKEKLEESE-----KRKSNAEQLNR 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHhHHHHHh
Confidence 344455555555555555544433 5555566666655555555555554331 11122246778
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001641 579 KLKALEAQILELKKKQES 596 (1039)
Q Consensus 579 kL~eLE~el~~Lkkk~~~ 596 (1039)
+++.||.++....+...+
T Consensus 81 riq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKE 98 (143)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 888888777777666555
No 129
>PRK06893 DNA replication initiation factor; Validated
Probab=92.76 E-value=0.047 Score=59.32 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=32.6
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..++||..++.. + .. .+..+...+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~-~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADN-N-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCC-h-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 468999999643 2 11 2233334444578888899999999999998
No 130
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=92.57 E-value=17 Score=38.99 Aligned_cols=117 Identities=24% Similarity=0.290 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001641 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK--K 655 (1039)
Q Consensus 578 kkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk--~ 655 (1039)
..|-+.+..+..|+.+...-....+.|...+.+|..|+.++..+...+...++.|+. +|=..++..++|+..++ .
T Consensus 54 ~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~---qfl~EK~~LEke~~e~~i~~ 130 (206)
T PF14988_consen 54 DQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAES---QFLQEKARLEKEASELKILQ 130 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHH
Confidence 444445555556666666666777777778888888888888877777775555543 45555555555552221 1
Q ss_pred hhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 656 EGRKNEFE-RHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1039)
Q Consensus 656 ~~rk~~~e-i~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le 697 (1039)
-..+...+ -.+.++..-.-+..+-.-+.-+.+.|.+|...|.
T Consensus 131 l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~ 173 (206)
T PF14988_consen 131 LGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELL 173 (206)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222 1222333333344555666666666666655554
No 131
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=92.39 E-value=18 Score=38.82 Aligned_cols=81 Identities=16% Similarity=0.391 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q 001641 526 TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-----QVEL 600 (1039)
Q Consensus 526 ~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~-----~~~l 600 (1039)
...+-..|..++..|+.+.-.-.++...+..+|..+. ...++++..+..|++|+.++...+..... +.+.
T Consensus 38 r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-----~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qf 112 (206)
T PF14988_consen 38 RQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-----EFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQF 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567899999999999999999999999988873 56788999999999999888877644333 5566
Q ss_pred HHHHhhhHHHH
Q 001641 601 LKQKHKSDEAA 611 (1039)
Q Consensus 601 ~k~k~k~e~~~ 611 (1039)
+..|...+.++
T Consensus 113 l~EK~~LEke~ 123 (206)
T PF14988_consen 113 LQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHH
Confidence 66666665555
No 132
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.36 E-value=7 Score=44.91 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 609 EAAKRLQAEIQSIKAQKVQLQNKIK 633 (1039)
Q Consensus 609 ~~~~~L~~ei~~lk~~kv~L~k~mk 633 (1039)
.++..+..+|.++..++.++...|.
T Consensus 237 ~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 237 EELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555554444433
No 133
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.10 E-value=42 Score=42.41 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001641 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKL 667 (1039)
Q Consensus 606 k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L 667 (1039)
..+.++..++.++.++.+....+-..++.+.-..-..+...++++..++.+......++..+
T Consensus 227 ~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 227 DLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666555555666666666666666555555444
No 134
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.83 E-value=20 Score=38.24 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 537 IMELEEEKRIVQQERDRLLAEIEN 560 (1039)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~ 560 (1039)
-..|++...+++.||+.|......
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777766654
No 135
>PRK09039 hypothetical protein; Validated
Probab=91.74 E-value=21 Score=41.37 Aligned_cols=36 Identities=11% Similarity=-0.014 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001641 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 634 ee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~ 669 (1039)
.+.......=.....+|..||.++..-+.+|...+.
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444556777888888887777777777776
No 136
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.64 E-value=43 Score=41.60 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001641 540 LEEEKRIVQQERDRLLAEIENL 561 (1039)
Q Consensus 540 LEeei~~LqkErd~Ll~~l~~~ 561 (1039)
++.++..++.+....+..+..+
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l 275 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL 275 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555554
No 137
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=46 Score=41.88 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 581 KALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (1039)
Q Consensus 581 ~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~m 632 (1039)
..|+.++.....++.+-.+..-.-.-.++.+..+..|...+.+....|++++
T Consensus 709 ~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 709 DLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred HHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333333333333333222223334445555555555555555544444
No 138
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.48 E-value=31 Score=41.98 Aligned_cols=110 Identities=18% Similarity=0.248 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcc-cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cccc
Q 001641 499 TMDKELNELNKRLEQKESEMKLFGD-ID--TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN-------SDGH 568 (1039)
Q Consensus 499 ~l~~El~eL~kqLe~kE~~~k~~~~-~d--~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~-------~~~~ 568 (1039)
=++.++.++..+|++.|..+..+.. +. .......+...+..++++...++.++..+...+..+... ....
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~ 244 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAG 244 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcc
Confidence 3566777788888887777765531 10 001111244566666666666666666665555544210 0000
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhH
Q 001641 569 TQKMQDGHTLKLKALEAQILELKKKQES-QVELLKQKHKSD 608 (1039)
Q Consensus 569 ~~KLke~~ekkL~eLE~el~~Lkkk~~~-~~~l~k~k~k~e 608 (1039)
....-...+.+|.+++.++..|...-.. |-++...+++.+
T Consensus 245 ~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~ 285 (498)
T TIGR03007 245 SSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIA 285 (498)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 0112235567889999888888754443 545544444333
No 139
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=47 Score=41.68 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001641 678 LQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALA 757 (1039)
Q Consensus 678 L~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~ 757 (1039)
..|+++++..+.+.|+...+.-+......+.. ..++-....+..-.++.+.+..+..=.+|-.|.+..
T Consensus 428 ~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~------------gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~ 495 (698)
T KOG0978|consen 428 AERQIRQVEELSEELQKKEKNFKCLLSEMETI------------GSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKAN 495 (698)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666666666666666655554333222211 113333344444455778888888888888888888
Q ss_pred HHHHHHHh
Q 001641 758 DELTILKQ 765 (1039)
Q Consensus 758 ~El~~Lk~ 765 (1039)
+....|+.
T Consensus 496 q~~k~L~~ 503 (698)
T KOG0978|consen 496 QKHKLLRE 503 (698)
T ss_pred HHHHHHHH
Confidence 88877775
No 140
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.19 E-value=52 Score=41.67 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 738 NVHEVRFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 738 ~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
.+.-+..++..+++.=..|.+.+..|+.
T Consensus 294 qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 294 QLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666667767777788888776
No 141
>PRK06620 hypothetical protein; Validated
Probab=91.10 E-value=0.081 Score=56.96 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=31.2
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCc---cEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNA---TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~---tI~aYGqTGSGKTyTm 98 (1039)
..|+||..+... + +...|..+ ..+.+. -|+|. .++-||++||||||.+
T Consensus 11 ~~~tfd~Fvvg~-~-N~~a~~~~-~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 11 SKYHPDEFIVSS-S-NDQAYNII-KNWQCG--FGVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCchhhEecc-c-HHHHHHHH-HHHHHc--cccCCCcceEEEECCCCCCHHHHH
Confidence 469999888543 3 34455442 222221 14543 4899999999999999
No 142
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.94 E-value=47 Score=40.79 Aligned_cols=137 Identities=22% Similarity=0.232 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSD---GHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDE 609 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~---~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~ 609 (1039)
..+++.+|..+|..+....+.............- .........|+..|.+-+.++..|+.....-..|...-.....
T Consensus 170 ~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~ 249 (522)
T PF05701_consen 170 NEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASA 249 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776666555433222211100 0011233456666677777777776665333333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001641 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 610 ~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~ 669 (1039)
.+..|+.++...+..+.......+.........=.....|+...+..+.+...++..|..
T Consensus 250 ~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~ 309 (522)
T PF05701_consen 250 ELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRA 309 (522)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555443333211111222222222334445555555555555555444444
No 143
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.91 E-value=21 Score=38.67 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 001641 574 DGHTLKLKALEAQILEL 590 (1039)
Q Consensus 574 e~~ekkL~eLE~el~~L 590 (1039)
+..++.+.+||.--.+|
T Consensus 108 eql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHhccHH
Confidence 33333444444333333
No 144
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.78 E-value=44 Score=40.17 Aligned_cols=141 Identities=19% Similarity=0.233 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q 001641 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-----QVELL 601 (1039)
Q Consensus 527 ~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~-----~~~l~ 601 (1039)
.....+++......+++..+.+.|.|+++.-+.+.+-.+.++..|+.+-- ....+-.+.++.|+.++.. -+.+.
T Consensus 420 ~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele-r~~kdqnkkvaNlkHk~q~Ekkk~aq~le 498 (654)
T KOG4809|consen 420 ADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE-RHMKDQNKKVANLKHKQQLEKKKNAQLLE 498 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC-chhhhhhhHHhhHHHHHHHHHHHHHHHHH
Confidence 34556688888888999999999999999888877555555555554322 2333333334444422221 11111
Q ss_pred HHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001641 602 KQKHKSD-----EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 602 k~k~k~e-----~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~ 669 (1039)
...++.+ .+.-...++|..|.+.|.. .-.++.-..--++..+.++--+++|+-+-|+.-.++-.+++
T Consensus 499 e~rrred~~~d~sqhlq~eel~~alektkQe-l~~tkarl~stqqslaEke~HL~nLr~errk~Lee~lemK~ 570 (654)
T KOG4809|consen 499 EVRRREDSMADNSQHLQIEELMNALEKTKQE-LDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKK 570 (654)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHhhC-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1222211 1122234555555555544 23444445555666677777888888888887777666654
No 145
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.67 E-value=27 Score=37.49 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 535 KKIMELEEEKRIVQQERDRLLAEIENLA 562 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~ 562 (1039)
.+-.....++..+..||+.+.+.|.+++
T Consensus 62 ~~~~~~~~~i~~~~~erdq~~~dL~s~E 89 (207)
T PF05010_consen 62 KQKELSEAEIQKLLKERDQAYADLNSLE 89 (207)
T ss_pred hhHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444556677788888888888887764
No 146
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.32 E-value=33 Score=38.02 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001641 624 QKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1039)
Q Consensus 624 ~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~ 668 (1039)
+.+-|+...-.....-...+..++.=|++|+.+..+...|+..|+
T Consensus 173 ~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 173 TLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333444444444445555566667777778888888888877777
No 147
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.21 E-value=21 Score=35.46 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001641 581 KALEAQILELKKKQESQVELLK-QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRK 659 (1039)
Q Consensus 581 ~eLE~el~~Lkkk~~~~~~l~k-~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk 659 (1039)
.+++.++..++.....+..+.+ ...+++.++...-+.|..| .++|++....+..-.....++...+..+..
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L--------~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~ 91 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKEL--------QQLREELQELQQEINELKAEAESAKAELEE 91 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433 5556666655555554444 344444444443333333333333333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 660 NEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1039)
Q Consensus 660 ~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le 697 (1039)
.+..-..-+.....+..-++++++++...|+=|-+.|+
T Consensus 92 ~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 92 SEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444555566666666666666665555
No 148
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.99 E-value=4.1 Score=43.16 Aligned_cols=89 Identities=25% Similarity=0.345 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001641 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (1039)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~ 613 (1039)
+.++..+.++...+.+.+..+...+-.+...-...-.++ ......|..|+.++..|+.+......-++.+.+. +..
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~-~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~---~e~ 148 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKEL-SEKERRLAELEAELAQLEEKIKDLEEELKEKNKA---NEI 148 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 455555666666666666666655554421111111111 1223445555555555554444433333333322 334
Q ss_pred HHHHHHHHHHHHH
Q 001641 614 LQAEIQSIKAQKV 626 (1039)
Q Consensus 614 L~~ei~~lk~~kv 626 (1039)
|++|+..+.-+..
T Consensus 149 l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 149 LQDELQALQLQLN 161 (194)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 149
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.97 E-value=6.4 Score=38.49 Aligned_cols=90 Identities=23% Similarity=0.372 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001641 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L 614 (1039)
.++..+.+++..++.+|+.+.+++-.+-...+ .. ......+..|+.++.+|+.+... ++-+--...+++..|
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e-~~----~~~~~~~~~L~~el~~l~~ry~t---~LellGEK~E~veEL 101 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENE-EL----RALKKEVEELEQELEELQQRYQT---LLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHhcchHHHHHHH
Confidence 45566777777788888888777766522211 11 22346677888777777766554 444444455678999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001641 615 QAEIQSIKAQKVQLQNKI 632 (1039)
Q Consensus 615 ~~ei~~lk~~kv~L~k~m 632 (1039)
+.+|.+||......+..|
T Consensus 102 ~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 102 RADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999998776655443
No 150
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.56 E-value=33 Score=36.83 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=35.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001641 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 598 ~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~ 669 (1039)
++...+|...+.++...+.+|..++..... |++.|+..+||.+..+..|+.
T Consensus 132 qry~aLK~hAeekL~~ANeei~~v~~~~~~---------------------e~~aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 132 QRYQALKAHAEEKLEKANEEIAQVRSKHQA---------------------ELLALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666667776666555544 777788888888888887774
No 151
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.51 E-value=22 Score=43.13 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=55.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---------
Q 001641 599 ELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA--------- 669 (1039)
Q Consensus 599 ~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~--------- 669 (1039)
-|+|.+...|.+.+.-++.|+++.+.||..+-+-+ -++..-=..-.-|+++|+++..-+..|+-+|..
T Consensus 192 alEkeq~e~E~K~R~se~l~qevn~~kv~e~~~er---lqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d 268 (861)
T KOG1899|consen 192 ALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQER---LQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMAD 268 (861)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhc
Confidence 35566666777777777777777777776443322 222222222334677777776666666544443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 670 --LNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1039)
Q Consensus 670 --~~~~q~~vL~rK~eE~~a~~krLke~Le 697 (1039)
.+.-+.+-|+.-.+++.+++..--...+
T Consensus 269 ~e~~~~rd~~lk~a~eslm~ane~kdr~ie 298 (861)
T KOG1899|consen 269 GEHKSLRDNTLKNALESLMRANEQKDRFIE 298 (861)
T ss_pred ccchhhHHHHHHHHHHHHHhhchhhhhHHH
Confidence 2344556677777777777754433333
No 152
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.47 E-value=72 Score=40.64 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 613 RLQAEIQSIKAQKVQLQNKI--KQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATK 690 (1039)
Q Consensus 613 ~L~~ei~~lk~~kv~L~k~m--kee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~k 690 (1039)
+|++|...+.+.+.++.+.. .+|.++.-.....+--++...=.+++....++.+--.+-.+|..+-+.-+.++.-.+.
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~ 469 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT 469 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88888888888888877776 4444433332222222222222233333333333333444555455555555555555
Q ss_pred HHHHHHHH
Q 001641 691 RLKELLEA 698 (1039)
Q Consensus 691 rLke~Le~ 698 (1039)
.|-+.|+.
T Consensus 470 ~L~d~le~ 477 (980)
T KOG0980|consen 470 NLNDQLEE 477 (980)
T ss_pred HHHHHHHH
Confidence 55555553
No 153
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.31 E-value=5.7 Score=45.41 Aligned_cols=28 Identities=46% Similarity=0.637 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 534 GKKIMELEEEKRIVQQERDRLLAEIENL 561 (1039)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1039)
...+..+++++..+++|.+.+.+++..+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666554
No 154
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.26 E-value=58 Score=39.23 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 001641 378 SSDMQKLRQQLKYLQAELCAR 398 (1039)
Q Consensus 378 ~~ei~~Lr~eI~~Lq~eL~~~ 398 (1039)
...+..|+.+|..|-.+|...
T Consensus 7 eq~ve~lr~eierLT~el~q~ 27 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQT 27 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 456788999999998888654
No 155
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.11 E-value=48 Score=38.11 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001641 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (1039)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~ 596 (1039)
...|++....|+.+...|...++ .+..+......+...|+.++..|+....+
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~--------~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLE--------QLDELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444443 33455555566667777777777765554
No 156
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.94 E-value=24 Score=35.54 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (1039)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~ 562 (1039)
..+...+..|.+.|+..+.....+. .+..+ ....+..|+.++..+..++..|..++.++.
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~-~daEn----~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLI-LDAEN----SKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666665555443332 22222 235566777777777777777777777663
No 157
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=88.88 E-value=50 Score=38.00 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 401 GAPSDEVQVLKGRIAWLEATNEDLCQELHEYR 432 (1039)
Q Consensus 401 ~~~~~e~q~L~eri~~Le~en~~L~~eL~e~r 432 (1039)
+.+++-...|+.+|..|.+..+..+.+++...
T Consensus 287 ~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q 318 (593)
T KOG4807|consen 287 GPPSDGHEALEKEVQALRAQLEAWRLQGEAPQ 318 (593)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhccCch
Confidence 34556677788877777776666666554433
No 158
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.80 E-value=46 Score=37.46 Aligned_cols=59 Identities=31% Similarity=0.389 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001641 596 SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 596 ~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~ 669 (1039)
-|.+|.++-++ +..+..++..|....|++.+++.+..+.|+. ++.+++.....|..|..
T Consensus 191 ~he~m~k~~~~----~De~Rkeade~he~~ve~~~~~~e~~ee~~~-----------~~~elre~~k~ik~l~~ 249 (294)
T COG1340 191 YHEEMIKLFEE----ADELRKEADELHEEFVELSKKIDELHEEFRN-----------LQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 34455554433 3356677777777788888888888877777 66666666666665554
No 159
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.71 E-value=0.19 Score=59.71 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=26.6
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccccc
Q 001641 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (1039)
Q Consensus 70 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 100 (1039)
...+..++..-+|.|+.-|+||||||+||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 4456778888999999999999999999943
No 160
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.65 E-value=5.7 Score=46.33 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=22.2
Q ss_pred EEcCCHHHHHHHHHhcccCcccccCCCCC-CCCCceEEEEEEEEee
Q 001641 193 VAVNTLQEMAACLEQGSLSRATGSTNMNN-QSSRSHAIFTITLEQM 237 (1039)
Q Consensus 193 ~~V~s~~e~~~~l~~g~~~R~~~~t~~N~-~SSRSH~Ifti~v~q~ 237 (1039)
+...+..++..++..=+. ..+|. .+--.|++|...|+-.
T Consensus 120 IkFr~q~da~~Fy~efNG------k~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFNG------KQFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred EEeccchhHHHHHHHcCC------CcCCCCCccceeEEEEEEEEEE
Confidence 566777777777764211 12221 1224688888877654
No 161
>PRK09087 hypothetical protein; Validated
Probab=88.64 E-value=0.18 Score=54.80 Aligned_cols=46 Identities=28% Similarity=0.257 Sum_probs=31.4
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|+||.-+..+ + +..+|. ++.....-.|..++-||++||||||-+
T Consensus 16 ~~~~~~~Fi~~~-~-N~~a~~-----~l~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 16 PAYGRDDLLVTE-S-NRAAVS-----LVDHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCChhceeecC-c-hHHHHH-----HHHhcccCCCCeEEEECCCCCCHHHHH
Confidence 468999988533 2 344555 334333223556899999999999999
No 162
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.42 E-value=54 Score=37.84 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=3.9
Q ss_pred cCcccCCc
Q 001641 950 PGIVNGSV 957 (1039)
Q Consensus 950 ~~~~~~~~ 957 (1039)
|||.-|--
T Consensus 436 ~gI~~p~q 443 (499)
T COG4372 436 PGIPAPAQ 443 (499)
T ss_pred CCCCcccc
Confidence 55554433
No 163
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=87.74 E-value=82 Score=39.12 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001641 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSAREN 706 (1039)
Q Consensus 644 ~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~ 706 (1039)
..-.++|.+++++.......|..|.-+.. ...++++...+..|-+.++++-.++...
T Consensus 248 ~~i~~~i~~i~~~l~~~~~~L~~l~l~~~------~~~~~~i~~~Id~lYd~le~E~~Ak~~V 304 (560)
T PF06160_consen 248 LDIEEEIEQIEEQLEEALALLKNLELDEV------EEENEEIEERIDQLYDILEKEVEAKKYV 304 (560)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777666654332 3445566666667777777666555443
No 164
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.73 E-value=0.17 Score=62.04 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=32.7
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|+||..+-.. + +...|. .+..++...-.+||. ||-||.+|+||||-+
T Consensus 283 ~~~TFDnFvvG~-s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL 331 (617)
T PRK14086 283 PKYTFDTFVIGA-S-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLL 331 (617)
T ss_pred CCCCHhhhcCCC-c-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHH
Confidence 469999876432 2 333443 344455544446776 889999999999998
No 165
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.62 E-value=1.1e+02 Score=40.40 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=14.0
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
++..+-+|+||||||..|
T Consensus 25 ~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 25 SGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 344566899999999776
No 166
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.61 E-value=67 Score=38.01 Aligned_cols=126 Identities=19% Similarity=0.273 Sum_probs=83.9
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 568 HTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASRE 647 (1039)
Q Consensus 568 ~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~ 647 (1039)
..+.++-.+++..+.+-.+|+.|+....+--+..+.-.+....++.|.+--..|+..-+.++--|+.=-.+.+.|--
T Consensus 254 ~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g--- 330 (622)
T COG5185 254 SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG--- 330 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch---
Confidence 34556666777777888888888877777777777777788888888888888877777776666555555555543
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 001641 648 KELLKLKKEGRKNEFERHKLEALNQRQKMVLQR------KTEEAAIATKRLKELLE 697 (1039)
Q Consensus 648 kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~r------K~eE~~a~~krLke~Le 697 (1039)
-|.+|+.+..+++.||..|++...--+..+.+ ..++..+....|--.|+
T Consensus 331 -~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~ 385 (622)
T COG5185 331 -KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELD 385 (622)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34568888888888888888754444444333 23444444444444444
No 167
>PF15294 Leu_zip: Leucine zipper
Probab=87.58 E-value=20 Score=40.05 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=23.0
Q ss_pred HHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 001641 653 LKKEGRKNEFERHKLEA---LNQRQKMVLQRKTEEAAIATKRL 692 (1039)
Q Consensus 653 Lk~~~rk~~~ei~~L~~---~~~~q~~vL~rK~eE~~a~~krL 692 (1039)
+..+++-.+.++.+.-. .+..-+.+|..|++++....+||
T Consensus 234 ~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 234 VQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred cchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHh
Confidence 44444444444333322 45555667888888877777766
No 168
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=87.54 E-value=1.2e+02 Score=40.76 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001641 379 SDMQKLRQQLKYLQAEL 395 (1039)
Q Consensus 379 ~ei~~Lr~eI~~Lq~eL 395 (1039)
.....++.++..++..+
T Consensus 574 ~~~~~~~~~~~~~~ek~ 590 (1294)
T KOG0962|consen 574 KELHKLSKEIQEMEERL 590 (1294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555544443
No 169
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.48 E-value=86 Score=39.07 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1039)
Q Consensus 631 ~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~ 698 (1039)
.|..--+++...-...+.++.-.+...+.....+.+++....+|...++.+...+++...+|.+.-+.
T Consensus 155 e~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~ 222 (716)
T KOG4593|consen 155 ELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADH 222 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445667777778888888888999999999999999999999999999988888887665443
No 170
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.26 E-value=87 Score=38.90 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 855 AAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIAL 908 (1039)
Q Consensus 855 ~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l 908 (1039)
+....|.....+.+++-+..+++.|.+.+.....-..+|+.+++..--+++.--
T Consensus 575 ~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~ 628 (786)
T PF05483_consen 575 ARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAES 628 (786)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667777777777777777776666666667777776665555433
No 171
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.21 E-value=37 Score=43.61 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccc-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 499 TMDKELNELNKRLEQKESEMKLFGDID-TEALR--HHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1039)
Q Consensus 499 ~l~~El~eL~kqLe~kE~~~k~~~~~d-~~~~k--~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1039)
=++.++.++.++++..|..+..+.... ..... .-.+.++.+|+.+....+.++......+..+
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888887776653210 00000 0134778888888888877777766665554
No 172
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.18 E-value=57 Score=36.73 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHhhHHH
Q 001641 794 RMERIASLENMLNMSSKALVEMASQLSEA 822 (1039)
Q Consensus 794 r~~~i~~Le~~~~~~~~~i~~l~~ql~~~ 822 (1039)
....|..|-+..+.++..|..+-+.+++.
T Consensus 177 ~~eki~~la~eaqe~he~m~k~~~~~De~ 205 (294)
T COG1340 177 IHEKIQELANEAQEYHEEMIKLFEEADEL 205 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555554
No 173
>PRK08727 hypothetical protein; Validated
Probab=86.80 E-value=0.27 Score=53.61 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=26.8
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCC-ccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N-~tI~aYGqTGSGKTyTm 98 (1039)
..|+||.-+... + + .+. .+..+..|+. -.|+-||++||||||.+
T Consensus 14 ~~~~f~~f~~~~-~-n--~~~-----~~~~~~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIAAP-D-G--LLA-----QLQALAAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccCCc-H-H--HHH-----HHHHHHhccCCCeEEEECCCCCCHHHHH
Confidence 357888876432 2 1 111 1122223433 35999999999999998
No 174
>PRK05642 DNA replication initiation factor; Validated
Probab=86.75 E-value=0.32 Score=53.12 Aligned_cols=45 Identities=20% Similarity=0.494 Sum_probs=28.7
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhc---CC-CccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ---GY-NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~---G~-N~tI~aYGqTGSGKTyTm 98 (1039)
..|+||.-+.. + +. .+...+..... ++ +..++-||++|+||||-+
T Consensus 14 ~~~tfdnF~~~--~-~~-----~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYPG--A-NA-----AALGYVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCcC--C-hH-----HHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHH
Confidence 46899998832 2 22 23333443333 22 246789999999999998
No 175
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.35 E-value=36 Score=38.89 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001641 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGR 658 (1039)
Q Consensus 607 ~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~r 658 (1039)
.+.++..+...|.+...++.++...+.+--......+---.+||..|+.+.+
T Consensus 230 ~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3444555555555555666665555555444444444444556655555444
No 176
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.26 E-value=1.3e+02 Score=39.79 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHH
Q 001641 724 SLQKWLEHELEVS-ANVHEVRFKYEK 748 (1039)
Q Consensus 724 ~~~~Wl~~Elei~-~~~~e~~~~~e~ 748 (1039)
....|+.+.++-+ ..+.+.....+.
T Consensus 526 ~~~~~~~~~~e~l~~~~e~~~~~~~~ 551 (908)
T COG0419 526 ALKEELEEKLEKLENLLEELEELKEK 551 (908)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455677776666 334444444333
No 177
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.04 E-value=51 Score=35.06 Aligned_cols=169 Identities=20% Similarity=0.265 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q 001641 498 NTMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG 575 (1039)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~--~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~ 575 (1039)
..|..++.++...|+....+.+.+-. ......=..|+..=.+|-.-+.....|...|...+....... ..
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~--------r~ 86 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE--------RE 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 34556666666666665544332211 111111123444444444444444444444444444321110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 576 HTLKLKALEAQILELKKKQESQVELLK-----QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKEL 650 (1039)
Q Consensus 576 ~ekkL~eLE~el~~Lkkk~~~~~~l~k-----~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi 650 (1039)
.++++++.+.+|..++...+.-.+|.. ...+...++..+...+++-......|-+++.-...-|+. ++
T Consensus 87 ~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r-------ql 159 (194)
T PF15619_consen 87 LERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR-------QL 159 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HH
Confidence 134455555444444433333222222 133444445555555555555555555555555555544 44
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001641 651 LKLKKEGRKNEFERHKLEALNQRQKMVLQRK 681 (1039)
Q Consensus 651 ~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK 681 (1039)
+..+++......++..|+.....-.+.|+.|
T Consensus 160 ~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 160 ASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333333444443
No 178
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=85.87 E-value=0.25 Score=59.11 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=31.1
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|+||.-+.. .+ +...|.. +..++.. -..||. +|-||++|+||||.+
T Consensus 100 ~~~tFdnFv~g-~~-n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 100 PDYTFENFVVG-PG-NSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCcccccccC-Cc-hHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 57999987743 22 3444443 2233332 123675 899999999999998
No 179
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.82 E-value=23 Score=35.86 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001641 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L 614 (1039)
.....|.+++..+..+.+.|...+..+ +.++.+++.++..++. ....+.+.-+..+..++.+
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL---------------~~~~~~~ere~~~~~~---~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERL---------------KEQLEELERELASAEE---KERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 445566667777666666665555443 2344444433332222 2223333334444555555
Q ss_pred HHHHHHHHHH
Q 001641 615 QAEIQSIKAQ 624 (1039)
Q Consensus 615 ~~ei~~lk~~ 624 (1039)
.+|++.++..
T Consensus 114 kee~~klk~~ 123 (151)
T PF11559_consen 114 KEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 180
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=85.55 E-value=0.35 Score=49.41 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=22.2
Q ss_pred chhhHHHhhcC-CCccEEeeccCCCCccccc
Q 001641 69 VAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 69 v~plV~~vl~G-~N~tI~aYGqTGSGKTyTm 98 (1039)
+..+++.+-.+ .+..++..|+||||||++|
T Consensus 12 i~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~ 42 (184)
T PF04851_consen 12 IARIINSLENKKEERRVLLNAPTGSGKTIIA 42 (184)
T ss_dssp HHHHHHHHHTTSGCSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCcChhh
Confidence 44555555554 4667778899999999999
No 181
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.51 E-value=52 Score=34.68 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (1039)
Q Consensus 531 ~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~ 562 (1039)
+++..+|..|++++.++..|++.+......+.
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 33557777888888888888777777776663
No 182
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=0.88 Score=53.03 Aligned_cols=28 Identities=32% Similarity=0.652 Sum_probs=20.5
Q ss_pred hhHHHhhcCCCcc-EEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNAT-VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~t-I~aYGqTGSGKTyTm 98 (1039)
.++..++.|.-.+ ++.||.||+|||.|+
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3344555554443 999999999999988
No 183
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.31 E-value=84 Score=36.90 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 001641 581 KALEAQILELK 591 (1039)
Q Consensus 581 ~eLE~el~~Lk 591 (1039)
..++.++..++
T Consensus 168 ~~~~~~l~~~~ 178 (423)
T TIGR01843 168 QALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 184
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.30 E-value=24 Score=38.54 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLK 602 (1039)
Q Consensus 536 kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k 602 (1039)
.|.++..+...+++-+..+..+++.++. -++.|.+++.++..|..+...|.+-++
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~------------ee~~L~e~~kE~~~L~~Er~~h~eeLr 56 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLEN------------EEKCLEEYRKEMEELLQERMAHVEELR 56 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777888877776521 135677777777777666666555443
No 185
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.21 E-value=1.4e+02 Score=39.20 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhHHHHHH
Q 001641 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQW---KASREKELLKLKKEGRKNEFERHK 666 (1039)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~---~~~~~kEi~qLk~~~rk~~~ei~~ 666 (1039)
-..+..+..+.++|..+++...+++..|-.....-+.. ....-||+.+..+..+.++..+..
T Consensus 223 fhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 223 FHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred hhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555666666666666566555553333222222 234455666666666655555554
No 186
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.67 E-value=1.2e+02 Score=38.26 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 742 VRFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 742 ~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
.......+......++.++..|.+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~ 412 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDK 412 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667788888888776
No 187
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.61 E-value=1.4e+02 Score=38.84 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001641 636 AEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 636 ~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~ 669 (1039)
.+-.+.....+.+.|.+.++..-..+.++....-
T Consensus 327 le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 327 LESLKKAAEKRQKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 3444455556677777777777777777665543
No 188
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=84.52 E-value=0.39 Score=56.27 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=30.4
Q ss_pred ceeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 45 ~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
+..|+||.-.... + +...|. +...|.....+.--.||-||++|+||||-|
T Consensus 81 ~~~ytFdnFv~g~-~-N~~A~a--a~~~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 81 NPKYTFDNFVVGP-S-NRLAYA--AAKAVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCCchhheeeCC-c-hHHHHH--HHHHHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 3579999877432 3 233222 222222222333446888999999999999
No 189
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.45 E-value=62 Score=34.62 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHH
Q 001641 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (1039)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e 577 (1039)
..|..++.++.+..+..+..|..+. .+...|-+-+.+++.|+..|...+...+. + +..-....
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~------------~eN~~L~epL~~a~~e~~eL~k~L~~y~k--d---K~~L~~~k 92 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEIS------------QENKRLSEPLKKAEEEVEELRKQLKNYEK--D---KQSLQNLK 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHH
Confidence 4455666666665555555544433 34455556666666777777766665421 1 11112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEG 657 (1039)
Q Consensus 578 kkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~ 657 (1039)
.++..++.+|..|+-+.. -++.++..+..|-.++.......+.-+. .+...-....++-|..|...+
T Consensus 93 ~rl~~~ek~l~~Lk~e~e----------vL~qr~~kle~ErdeL~~kf~~~i~evq---Qk~~~kn~lLEkKl~~l~~~l 159 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHE----------VLEQRFEKLEQERDELYRKFESAIQEVQ---QKTGLKNLLLEKKLQALSEQL 159 (201)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 566667766666664433 2344455555555555555554333332 344445567788888888888
Q ss_pred hhhHHHHHHHHH
Q 001641 658 RKNEFERHKLEA 669 (1039)
Q Consensus 658 rk~~~ei~~L~~ 669 (1039)
.+++.++..+-+
T Consensus 160 E~keaqL~evl~ 171 (201)
T PF13851_consen 160 EKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHH
Confidence 888888777665
No 190
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.26 E-value=30 Score=37.83 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001641 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQE 595 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~ 595 (1039)
.-|.++..++..|..||....++|..+ ..-+..||..|..++....
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI---------------~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQI---------------NQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 557788888888888888888888776 2445678866666654443
No 191
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.23 E-value=0.47 Score=51.82 Aligned_cols=45 Identities=13% Similarity=0.361 Sum_probs=28.8
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhh-cCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF-QGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|+||.-+.. . +...+. .+..+. ......++-||++|+||||.+
T Consensus 17 ~~~~fd~f~~~--~-n~~a~~-----~l~~~~~~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 17 DDETFASFYPG--D-NDSLLA-----ALQNALRQEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CcCCccccccC--c-cHHHHH-----HHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 46888877743 3 333432 233332 223357899999999999998
No 192
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.89 E-value=0.41 Score=57.47 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=29.0
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|+||.-.... . +...|.. +..+...--..|| .++-||++|+||||.+
T Consensus 117 ~~~tfd~fv~g~-~-n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 117 PKYTFDNFVVGK-S-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCcccccccCC-C-cHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 578998844222 2 3333432 3333333212344 4788999999999998
No 193
>PRK12377 putative replication protein; Provisional
Probab=83.88 E-value=0.41 Score=52.76 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=32.2
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..+||........ +..++.. +..+++.+..+. ..|+-||++|+||||.+
T Consensus 70 ~~tFdnf~~~~~~-~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 70 KCSFANYQVQNDG-QRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCcCCcccCChh-HHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHH
Confidence 3478775533222 3334443 566677666554 46788999999999998
No 194
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.79 E-value=0.48 Score=50.86 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=29.8
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|+||....+ . +..++.. +-.-+..+....|+-||++|+||||..
T Consensus 10 ~~~~~~~~~~~--~-~~~~~~~----l~~~~~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYAG--G-NAELLAA----LRQLAAGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCcC--C-cHHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 35788877732 2 2333332 222223566778999999999999998
No 195
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.66 E-value=88 Score=39.99 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 670 LNQRQKMVLQRKTEEAAIATKRLKE 694 (1039)
Q Consensus 670 ~~~~q~~vL~rK~eE~~a~~krLke 694 (1039)
+++.=+.+|+...++.....+.+|.
T Consensus 686 Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 686 QKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567788888777777666654
No 196
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.23 E-value=1.2e+02 Score=36.89 Aligned_cols=111 Identities=22% Similarity=0.267 Sum_probs=54.4
Q ss_pred hhhhhhHHHHHHHHHhhhhccCCCCCcccCCCCchhhhhh-ccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHH----h
Q 001641 289 HINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQ-DSLGGNSKTVMIACISPADINAEESLNTLKYANR----A 363 (1039)
Q Consensus 289 ~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkLTrLLq-dsLGGns~t~mI~~vSP~~~~~~ETl~TLrfa~r----a 363 (1039)
.|+.||..|.++...++.- -...|-.+-. -+.|..+-|. +++|.. .+.+ |.|=.| +
T Consensus 214 c~~~sl~~l~~~~~k~a~f-----------~~nnld~~~~~~~y~~~~~~~---~~~~~~---~~~~--~~~~~~a~~~~ 274 (518)
T PF10212_consen 214 CILSSLVSLTNGTGKIAAF-----------FSNNLDFFTSSSGYGPKGATT---FTNPLS---AECM--LQYKKRAAAYM 274 (518)
T ss_pred HHHHHHHHHHhhhHHHHHH-----------HhcchHHhhcccccCCCcccc---cCCccc---hHHH--HHHHHHHHHHH
Confidence 5777777777776666542 2222222221 1233333333 345532 2333 555444 3
Q ss_pred hcccCccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001641 364 RNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLC 425 (1039)
Q Consensus 364 r~IknkpvvN~d~~~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~en~~L~ 425 (1039)
..+ .+|.....|+...+..-+ |-.--.+-. .| -...++...++|+.|+.+++...
T Consensus 275 ~~~-~~p~~~svpy~~a~~n~r--il~sstes~---e~-L~qqV~qs~EKIa~LEqEKEHw~ 329 (518)
T PF10212_consen 275 SSL-KKPCPESVPYEEALANRR--ILLSSTESR---EG-LAQQVQQSQEKIAKLEQEKEHWM 329 (518)
T ss_pred HHh-cCCCCccCChHHHHhhhH--HHhhhHHhH---HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 478877777765553211 111000000 00 13457777888888888877644
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.05 E-value=26 Score=41.17 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 526 TEALRHHFGKKIMELEEEKRIVQQERDRLLA 556 (1039)
Q Consensus 526 ~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~ 556 (1039)
.+..++-.+.++.+++.++.++++|...+.+
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444566667777777776666666553
No 198
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.01 E-value=0.61 Score=45.08 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=20.5
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 70 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..+...+.......|+.+|++|+|||+++
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 34444444434557889999999999877
No 199
>PRK06526 transposase; Provisional
Probab=82.59 E-value=0.49 Score=52.37 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.7
Q ss_pred EEeeccCCCCcccccc
Q 001641 84 VLAYGQTGSGKTYTMG 99 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm~ 99 (1039)
|+.||++|+||||.+.
T Consensus 101 lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 101 VVFLGPPGTGKTHLAI 116 (254)
T ss_pred EEEEeCCCCchHHHHH
Confidence 7899999999999983
No 200
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.38 E-value=1.5e+02 Score=37.35 Aligned_cols=91 Identities=18% Similarity=0.283 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhh--hhHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHhh
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQ--DGHTLKLKALEAQILELKKKQ---ESQVELLK-QKHK 606 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLk--e~~ekkL~eLE~el~~Lkkk~---~~~~~l~k-~k~k 606 (1039)
.+.+|.+|+..++.++.+......-++.+.+++..-.+-+. .+....|.+|+.-...|.... ...-.... .++.
T Consensus 120 qEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~ke 199 (617)
T PF15070_consen 120 QEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKE 199 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 45667777776666654432222223333222221111111 122344455554444444332 12222222 3344
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001641 607 SDEAAKRLQAEIQSIKA 623 (1039)
Q Consensus 607 ~e~~~~~L~~ei~~lk~ 623 (1039)
+..++..|+.++..|+.
T Consensus 200 L~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 200 LQKKLGELQEKLHNLKE 216 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555556555555543
No 201
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=82.27 E-value=0.87 Score=52.66 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=24.4
Q ss_pred cchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 68 CVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 68 ~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
...|.+..++.--.+.|+..|+||||||+||
T Consensus 109 g~~~~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 109 GLPPVLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CCCHHHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 3446666666555688999999999999999
No 202
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=82.23 E-value=0.64 Score=54.96 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=28.3
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|+||..... .. +...|.. +..+...--..|| .++-||++|+||||.+
T Consensus 105 ~~~tfd~fi~g-~~-n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 105 PKYTFDNFVVG-KS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCcccccccC-Cc-HHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 57899984422 22 3333332 3333332111234 4788999999999998
No 203
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.19 E-value=0.65 Score=50.11 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=29.9
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|+||.+++.. ...++. .+..++.. .+.+..|+-||++||||||.+
T Consensus 13 ~~~~~d~f~~~~---~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAGE---NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccCC---cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 469999988332 223322 23333331 234567899999999999988
No 204
>PRK08116 hypothetical protein; Validated
Probab=82.13 E-value=0.46 Score=52.99 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=33.1
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhc--CCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~--G~N~tI~aYGqTGSGKTyTm 98 (1039)
..++||.-.. +.. +...|. .+...++.+.. +.|..++-||++||||||.+
T Consensus 80 ~~~tFdnf~~-~~~-~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFLF-DKG-SEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred HhcchhcccC-ChH-HHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 3578887553 222 333443 35666666544 34556999999999999998
No 205
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.08 E-value=1.4e+02 Score=37.11 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001641 590 LKKKQESQVELLKQKHKSDEAAKRLQAEIQS 620 (1039)
Q Consensus 590 Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~ 620 (1039)
|+++-.+-.++.+.+...+-++..|...+..
T Consensus 386 Lqkks~eleEmtk~k~~ke~eleeL~~~L~e 416 (786)
T PF05483_consen 386 LQKKSSELEEMTKQKNNKEVELEELKKILAE 416 (786)
T ss_pred HHHhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444444445555555555555555555543
No 206
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=82.05 E-value=15 Score=36.67 Aligned_cols=119 Identities=14% Similarity=0.121 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhhhc
Q 001641 847 LLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASGIQQGSSWRSSKH 926 (1039)
Q Consensus 847 ~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 926 (1039)
+|.||+..-..-+.....-+.+=.||+.++..|+++++-++.-...|..-.++.|-++---=+.... ...|.+...
T Consensus 5 Vl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~-~~~~~~~~~--- 80 (134)
T PF08232_consen 5 VLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK-LKYGTDLNQ--- 80 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccccc---
Confidence 6889999999999999999999999999999999999988888888888888887765433222222 111122211
Q ss_pred hhhhcCCCCCCCccCcccccccccCcccCCccchhhhhhhccc
Q 001641 927 FADDMSGPLSPVSLPAPKQLKFTPGIVNGSVRESAAFVDQTRK 969 (1039)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1039)
....-+........+......-.|++.+...+.|-.||++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~L~~~l~ 123 (134)
T PF08232_consen 81 SQKKKSSSSDEELEEDSDEESSSPEIDESKWKKSRQLLRKYLQ 123 (134)
T ss_pred ccccccccccccccCCcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 0000001111122233444444567777788888889887543
No 207
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=81.93 E-value=0.6 Score=58.47 Aligned_cols=93 Identities=25% Similarity=0.413 Sum_probs=56.3
Q ss_pred EEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccch--h--HHHHHHHHHHH
Q 001641 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLI--P--QVMNALFNKIE 123 (1039)
Q Consensus 48 F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Gii--p--r~~~~LF~~i~ 123 (1039)
|....-|.|.+. |..- +..+++.+-.|... ...+|.|||||||||..-......+-|| | .....|++.+.
T Consensus 2 f~~~~~~~~~~~-Q~~a----i~~l~~~~~~~~~~-~~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 2 FKLHSPFQPAGD-QPKA----IAKLVEGLTDGEKH-QTLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ceeccCCCCChH-HHHH----HHHHHHhhhcCCCc-EEEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 344445767665 4433 34566666666423 2378999999999994322211223222 2 24566777776
Q ss_pred hccccceEEEEeehhhhhhhHHh
Q 001641 124 TLRHQMEFQLHVSFIEILKEEVR 146 (1039)
Q Consensus 124 ~~~~~~~~~v~vS~~EIYnE~v~ 146 (1039)
..-+...+...|||+..|+-+.|
T Consensus 76 ~f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 76 EFFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HhCCCCeEEEEeeecccCCcccc
Confidence 65555558889999999976643
No 208
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=81.75 E-value=1.4e+02 Score=36.69 Aligned_cols=85 Identities=32% Similarity=0.305 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001641 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQW----KASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKT 682 (1039)
Q Consensus 607 ~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~----~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~ 682 (1039)
.+.++..|..|+++++.+... +.+.|+.. .....-++.. ..+.+....|+..+.....++..-+..++
T Consensus 293 l~~Qi~~l~~e~~d~e~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~~~~s~~~~k~ 364 (511)
T PF09787_consen 293 LERQIEQLRAELQDLEAQLEG-------EQESFREQPQELSQQLEPELTT-EAELRLYYQELYHYREELSRQKSPLQLKL 364 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 334455555555555554444 34444333 2233333333 67778888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001641 683 EEAAIATKRLKELLEAR 699 (1039)
Q Consensus 683 eE~~a~~krLke~Le~~ 699 (1039)
.+-...+.+|+..|-++
T Consensus 365 ~~ke~E~q~lr~~l~~~ 381 (511)
T PF09787_consen 365 KEKESEIQKLRNQLSAR 381 (511)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888888998877654
No 209
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.37 E-value=75 Score=38.87 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFR 640 (1039)
Q Consensus 605 ~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r 640 (1039)
..+|.+--+|-.||.+||=..+-|=|--.+--+++|
T Consensus 170 tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R 205 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLR 205 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 455566667778888887777664433333333333
No 210
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.35 E-value=1.1 Score=49.17 Aligned_cols=43 Identities=35% Similarity=0.476 Sum_probs=32.3
Q ss_pred chhhHHHhhcCCCccEEeeccCCCCcccccc--cCCCCCCcccch
Q 001641 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGLREGFQTGLI 111 (1039)
Q Consensus 69 v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~--G~~~~~~~~Gii 111 (1039)
+.|++..+.----+.|+..|+|||||++||- -++.+....|=|
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHI 159 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCce
Confidence 5677888888888999999999999999983 224444555543
No 211
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.33 E-value=22 Score=40.70 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 537 IMELEEEKRIVQQERDRLLAEIENL 561 (1039)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~ 561 (1039)
+..|+.+...+++|++....-+..+
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l 35 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKL 35 (314)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777666655
No 212
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=81.28 E-value=60 Score=32.19 Aligned_cols=124 Identities=21% Similarity=0.301 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAA 686 (1039)
Q Consensus 607 ~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~ 686 (1039)
...++..+...+.+...+...+..-|+......+.....+++|+.. ....+..|. -|+....++.
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~-------Ha~~~~~L~--------~lr~e~~~~~ 72 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVK-------HAEDIKELQ--------QLREELQELQ 72 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHH--------HHHHHHHHHH
Confidence 3444455555555555555666666666666666666666766641 111111111 2333333333
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 687 IATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTIL 763 (1039)
Q Consensus 687 a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~L 763 (1039)
..+..|+...+.-+..- ...-..|..++-..-..+.+++..++.|....+-|-..|+.|
T Consensus 73 ~~~~~l~~~~~~a~~~l------------------~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 73 QEINELKAEAESAKAEL------------------EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344433333221111 113356888888888888888899998888888888887654
No 213
>PF13245 AAA_19: Part of AAA domain
Probab=81.26 E-value=0.82 Score=40.87 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.3
Q ss_pred HHHhhcCCCccEEeeccCCCCccccc
Q 001641 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 73 V~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
|...+. -+..++..|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 344455 3333445899999999998
No 214
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.25 E-value=0.71 Score=54.13 Aligned_cols=20 Identities=45% Similarity=0.675 Sum_probs=17.2
Q ss_pred CCCccEEeeccCCCCccccc
Q 001641 79 GYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (1039)
+.+..++-||++|+|||+++
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44567899999999999988
No 215
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=81.19 E-value=0.88 Score=50.52 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=24.9
Q ss_pred ccccchhhHHHhhcCC---CccEEeeccCCCCccccc
Q 001641 65 FGECVAPLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 65 y~~~v~plV~~vl~G~---N~tI~aYGqTGSGKTyTm 98 (1039)
+.....+.+..++... .+.|+..|.||||||.+|
T Consensus 108 ~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 108 ESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred CchhhHHHHHHHHhhccccceEEEEECCCccccchHH
Confidence 3334445566666655 777888899999999999
No 216
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=81.17 E-value=0.54 Score=56.37 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=29.5
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.|+||.-+.. .+ +...|. .+..++..--..|| .+|-||++|+||||.|
T Consensus 111 ~~tFdnFv~g-~~-n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVIG-SS-NEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccCC-Cc-HHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 5999997743 23 333443 23333322111244 4788999999999998
No 217
>PRK10436 hypothetical protein; Provisional
Probab=81.00 E-value=0.72 Score=55.36 Aligned_cols=28 Identities=36% Similarity=0.382 Sum_probs=23.5
Q ss_pred hHHHhhcCCCccEEeeccCCCCcccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 99 (1039)
.+..++..-++.|+..|+||||||+||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3555666788999999999999999993
No 218
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=80.99 E-value=1.4e+02 Score=37.67 Aligned_cols=141 Identities=21% Similarity=0.300 Sum_probs=72.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcc----ccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 001641 497 QNTMDKELNELNKRLEQKESEMKLFGD----IDTE---ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHT 569 (1039)
Q Consensus 497 q~~l~~El~eL~kqLe~kE~~~k~~~~----~d~~---~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~ 569 (1039)
-.+|.+.|.-||.+|.+.|...+.... .+.. .+.--++.++.+.......|+.-.++|+..+++...+ .
T Consensus 396 NaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~E----n 471 (861)
T PF15254_consen 396 NAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEE----N 471 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH----H
Confidence 457788999999999998877654431 1221 2222255666666666666666666666555543111 1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 570 QKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKE 649 (1039)
Q Consensus 570 ~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kE 649 (1039)
++ +...+++-+.+ |.+.|+..+-+..++.-|+.+.-.... +=+|+.. .-+||
T Consensus 472 k~----~~~~~~ekd~~-------------l~~~kq~~d~e~~rik~ev~eal~~~k---------~~q~kLe--~sekE 523 (861)
T PF15254_consen 472 KR----LRKMFQEKDQE-------------LLENKQQFDIETTRIKIEVEEALVNVK---------SLQFKLE--ASEKE 523 (861)
T ss_pred HH----HHHHHHHHHHH-------------HHhhHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhHH--HHHhh
Confidence 11 22233333322 223333333333333333322211111 1122232 34566
Q ss_pred HHHHHHhhhhhHHHHHHHHH
Q 001641 650 LLKLKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 650 i~qLk~~~rk~~~ei~~L~~ 669 (1039)
-.-|.--+|.++.||.+|..
T Consensus 524 N~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 524 NQILGITLRQRDAEIERLRE 543 (861)
T ss_pred hhHhhhHHHHHHHHHHHHHH
Confidence 66688888888888888874
No 219
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.76 E-value=23 Score=38.07 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001641 539 ELEEEKRIVQQERDRLLAEIENL 561 (1039)
Q Consensus 539 eLEeei~~LqkErd~Ll~~l~~~ 561 (1039)
.+...+.++++|.+.+.+++.++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666654
No 220
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=80.70 E-value=0.65 Score=53.81 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=20.5
Q ss_pred hHHHhhc-CCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~-G~N~tI~aYGqTGSGKTyTm 98 (1039)
.+..++. +...+++.||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444444 45678999999999999987
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=80.41 E-value=0.63 Score=51.15 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=29.8
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
...+||..... ...+..++.. +...++.+..|+ ..++-||++|+||||.+
T Consensus 67 ~~~tFdnf~~~-~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRVE-CEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccCC-CchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHH
Confidence 35678765422 2223334433 334444443343 36888999999999998
No 222
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=80.34 E-value=0.75 Score=56.80 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=23.8
Q ss_pred hHHHhhcCCCccEEeeccCCCCcccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 99 (1039)
.+..++..-++.|+..|+||||||+||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4566677788999999999999999993
No 223
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=80.32 E-value=0.82 Score=55.34 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=23.1
Q ss_pred hHHHhhcCCCccEEeeccCCCCcccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 99 (1039)
.+..++..-++.|+..|+||||||+||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455667777889999999999999994
No 224
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=80.32 E-value=0.71 Score=44.12 Aligned_cols=15 Identities=53% Similarity=0.618 Sum_probs=13.8
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 578999999999999
No 225
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=80.16 E-value=3.1 Score=41.98 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=20.1
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
++..+..|.| ++..|+||||||++.
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHH
Confidence 4555666766 788999999999998
No 226
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.05 E-value=1.1e+02 Score=34.28 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 536 KIMELEEEKRIVQQERDRLLAEIENL 561 (1039)
Q Consensus 536 kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1039)
.+..+...+..+..+++.|..++...
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666554
No 227
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.73 E-value=1.3e+02 Score=35.15 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQ 638 (1039)
Q Consensus 597 ~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~ 638 (1039)
..++.+-.+|.|.+--.-+..+..|...+|+|-..+.+|.+-
T Consensus 160 vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEa 201 (552)
T KOG2129|consen 160 VNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEA 201 (552)
T ss_pred HHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence 456666666777766666777788888888877777666554
No 228
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=79.47 E-value=24 Score=38.83 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 535 KKIMELEEEKRIVQQERDRLLAEIENLA 562 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~ 562 (1039)
.||.+||.++.+|.+|+..-.-.|.+++
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlE 45 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLE 45 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6788888888888888877776776664
No 229
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.37 E-value=74 Score=32.12 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=38.7
Q ss_pred HHHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 798 IASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLN 877 (1039)
Q Consensus 798 i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~ 877 (1039)
+..|+..+......+.+..+.+.+.+++.. .+.-+..-++.|-..+-.+...+......|.++..+..
T Consensus 44 ~~~lE~eld~~~~~l~~~k~~lee~~~~~~------------~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 44 NQQLEEELDKLEEQLKEAKEKLEESEKRKS------------NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345555555555555555555555543221 01112223333444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001641 878 DLVALLKQSEAQRKELV 894 (1039)
Q Consensus 878 el~~~l~~~~~~~~~l~ 894 (1039)
.+++.+..++.+...+.
T Consensus 112 ~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 112 HFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 44444444444444433
No 230
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=79.36 E-value=0.76 Score=48.76 Aligned_cols=18 Identities=50% Similarity=0.695 Sum_probs=16.2
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
++.|+-.|+||||||+++
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367889999999999998
No 231
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=79.17 E-value=0.72 Score=44.72 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=13.3
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
+.+++.||++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999988
No 232
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.13 E-value=90 Score=34.49 Aligned_cols=17 Identities=41% Similarity=0.462 Sum_probs=7.1
Q ss_pred HHHhhhhhHHHHHHHHH
Q 001641 653 LKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 653 Lk~~~rk~~~ei~~L~~ 669 (1039)
|..+.+..+.++..|..
T Consensus 80 Le~e~~e~~~~i~~l~e 96 (246)
T PF00769_consen 80 LEQELREAEAEIARLEE 96 (246)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 233
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=79.09 E-value=1.5e+02 Score=35.40 Aligned_cols=105 Identities=9% Similarity=0.115 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhh
Q 001641 500 MDKELNELNKRLEQKESEMKLFGDID-TEALRH---HFGKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKM 572 (1039)
Q Consensus 500 l~~El~eL~kqLe~kE~~~k~~~~~d-~~~~k~---~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~---~~~~~~KL 572 (1039)
++.++.++..+|+..|..+..+.... ...... ....++..|+.+...++.++......+...... .+-.....
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPI 255 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChH
Confidence 55677777777777777776653210 000000 112567777777777777766555554322100 00001112
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001641 573 QDGHTLKLKALEAQILELKKKQES-QVELLKQK 604 (1039)
Q Consensus 573 ke~~ekkL~eLE~el~~Lkkk~~~-~~~l~k~k 604 (1039)
-..++.+|.+++.++..|...-.+ |-.+..++
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~ 288 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQ 288 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 234567777777777777544333 33333333
No 234
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=78.98 E-value=1 Score=52.53 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=20.8
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
++++.++. .++.|+..|+||||||+||
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 34444443 5678889999999999999
No 235
>PF14992 TMCO5: TMCO5 family
Probab=78.96 E-value=1.2e+02 Score=34.12 Aligned_cols=115 Identities=21% Similarity=0.335 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001641 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQ---DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEA 610 (1039)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLk---e~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~ 610 (1039)
+..+.+|+.+..+|+++-+.+-..+.++..+.+.+..++. ....+.++..+..+..+. ..=+. .+++
T Consensus 62 e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~---~~~~~-------qE~e 131 (280)
T PF14992_consen 62 ETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLL---ESCAS-------QEKE 131 (280)
T ss_pred HHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHH---HHHHH-------HHHH
Confidence 4557788888888888888876555555433333333332 222355555553222222 22222 2233
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001641 611 AKRLQAE---IQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE 663 (1039)
Q Consensus 611 ~~~L~~e---i~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~e 663 (1039)
+.++.++ +..+-.....-++++|+.. +. ...+||+..|.++.++.+..
T Consensus 132 i~kve~d~~~v~~l~eDq~~~i~klkE~L---~r--mE~ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 132 IAKVEDDYQQVHQLCEDQANEIKKLKEKL---RR--MEEEKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHhch
Confidence 3333222 3444445555566666644 22 22267777777776665554
No 236
>PF13514 AAA_27: AAA domain
Probab=78.95 E-value=2.5e+02 Score=37.97 Aligned_cols=57 Identities=28% Similarity=0.292 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001641 381 MQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVE 439 (1039)
Q Consensus 381 i~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~en~~L~~eL~e~r~rl~~~E 439 (1039)
|..+..++..++.++... .....++..+...+..++.+...|..++...+.+...++
T Consensus 152 in~~l~~l~e~~~~l~~~--~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~le 208 (1111)
T PF13514_consen 152 INQALKELKELERELREA--EVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLE 208 (1111)
T ss_pred HHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555432 122566677777777777777777777776666555443
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.74 E-value=71 Score=39.18 Aligned_cols=58 Identities=17% Similarity=0.365 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001641 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1039)
Q Consensus 610 ~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~ 668 (1039)
.+..++.+|..|+.....+.+.++.+..+-+.- ..++++|..|++++..+...+..|+
T Consensus 444 ~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei-~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 444 ELEELKREIEKLESELERFRREVRDKVRKDREI-RARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666555555333333322 2345556666665555555544444
No 238
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=78.25 E-value=1.1 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.7
Q ss_pred HHHhhcCCCccEEeeccCCCCccccc
Q 001641 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 73 V~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
+..++.--++.|+..|+||||||+||
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHH
Confidence 33344445789999999999999999
No 239
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=78.24 E-value=1.9e+02 Score=36.07 Aligned_cols=71 Identities=20% Similarity=0.412 Sum_probs=31.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001641 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQ-SIKAQKVQLQNKIKQEAEQFRQW 642 (1039)
Q Consensus 571 KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~-~lk~~kv~L~k~mkee~~~~r~~ 642 (1039)
.+-.....++..|..+|.+|+.....+.+ ..++.+.++....+..++. .++.....+..+++.+.++++..
T Consensus 251 ~~i~~a~~~i~~L~~~l~~l~~~~~~~l~-~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~ 322 (582)
T PF09731_consen 251 SLIAHAKERIDALQKELAELKEEEEEELE-RALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREE 322 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666666666544433221 1122223332333433333 44444445555555555544443
No 240
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=78.11 E-value=0.9 Score=49.05 Aligned_cols=17 Identities=41% Similarity=0.729 Sum_probs=14.2
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
.-+..+|.||||||||+
T Consensus 24 ~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTV 40 (229)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34556799999999999
No 241
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.92 E-value=2.3e+02 Score=36.99 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHhhHHH
Q 001641 792 NARMERIASLENMLNMSSKALVEMASQLSEA 822 (1039)
Q Consensus 792 ~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~ 822 (1039)
+.|..+|..|+..+..++..+..+..++++.
T Consensus 866 ~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ 896 (1072)
T KOG0979|consen 866 EVREDELRELETKLEKLSEDLERIKDKLSDV 896 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhH
Confidence 5566677777777777766666666666665
No 242
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.86 E-value=65 Score=35.52 Aligned_cols=97 Identities=24% Similarity=0.338 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001641 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (1039)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~ 613 (1039)
++++..+.++...+..+.+.|..+++.++ .-.+.++..+..++.++.+|+...
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~--------~~~~~l~~~v~~q~~el~~L~~qi------------------- 93 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLE--------VYNEQLERQVASQEQELASLEQQI------------------- 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 35555555555555555555555555441 111222334444444444443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhh
Q 001641 614 LQAEIQSIKAQKVQLQNKIKQEAEQFRQ-----WKASREKELLKLKKEGRK 659 (1039)
Q Consensus 614 L~~ei~~lk~~kv~L~k~mkee~~~~r~-----~~~~~~kEi~qLk~~~rk 659 (1039)
++|...+...+-+|.+|-++.+.|=. ....|.+.|..|+.-+.+
T Consensus 94 --~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 94 --EQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhc
Confidence 23455566667788888888888766 333444555555544433
No 243
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=77.31 E-value=0.97 Score=43.09 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=15.2
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 46788999999999998
No 244
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=76.99 E-value=1.4e+02 Score=36.73 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=20.7
Q ss_pred cceeeeccccceeeeeeecccCcchhhhhhhccchhhhccCCCch
Q 001641 989 KLWRWKRSHHQWLLQFKWKWQKPWKLSEWIKHSDETIMKSRPRPQ 1033 (1039)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1039)
.+..+-++||- . ..|..+--||-+-...+...||..+
T Consensus 392 ~V~~aI~~HH~-~-------~~~~~~~a~IV~~AD~lsa~rpgar 428 (514)
T TIGR03319 392 EVVNAIAAHHG-D-------VEPTSIEAVLVAAADALSAARPGAR 428 (514)
T ss_pred HHHHHHHHhCC-C-------CCCCCHHHHHHHHHHHhcCCCCCCc
Confidence 44555566663 1 1355555566665556666666654
No 245
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.82 E-value=1.8e+02 Score=35.09 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Q 001641 644 ASREKELLKLKKEGRKNEFERHKL 667 (1039)
Q Consensus 644 ~~~~kEi~qLk~~~rk~~~ei~~L 667 (1039)
.....++.+|+.+....+.++..+
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334555566666655555555544
No 246
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=76.68 E-value=1.7e+02 Score=34.84 Aligned_cols=49 Identities=27% Similarity=0.414 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001641 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE 663 (1039)
Q Consensus 615 ~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~e 663 (1039)
.+||..|+.-|.+|=+....-....+..+..++.|.+-|..+..|.+.+
T Consensus 459 eeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 459 EEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555444444555555555666666777776666665554
No 247
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.64 E-value=73 Score=33.71 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1039)
...++..|..++..+..+...+...++..
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777777776665
No 248
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.15 E-value=1.9e+02 Score=35.22 Aligned_cols=196 Identities=18% Similarity=0.186 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHH
Q 001641 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQI---LELKKKQESQVELLKQKHKSDEAAK 612 (1039)
Q Consensus 536 kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el---~~Lkkk~~~~~~l~k~k~k~e~~~~ 612 (1039)
++..|...+.++++++|.|...+.++....+ -.-+.+.+ +++.++..++ .+++++.....+++..+-......+
T Consensus 340 ~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~--R~~~s~A~-~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~~~s~~~r 416 (852)
T KOG4787|consen 340 QVQHLNTKIERLEKTNDHLNKKIVELEADCK--RGGVTSAH-SKAGEFKLTPEMEKDMSKMIVTISELERKNLELTTQVK 416 (852)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhc--ccchHHHH-HHhhhhhcChHhHhHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3455666788888888888888888743211 11111222 4444444322 3445555556666555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 001641 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA----LNQRQKMVLQRKTEEAAIA 688 (1039)
Q Consensus 613 ~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~----~~~~q~~vL~rK~eE~~a~ 688 (1039)
+|+.-.+ ++++ |-. +-..-++++++-+.+|..|+- +.-.+..-|+.+.+.|.-.
T Consensus 417 ~L~~~~~------------~~~~---~~~-------~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~ 474 (852)
T KOG4787|consen 417 QLETKVT------------PKPN---FVV-------PSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQ 474 (852)
T ss_pred HHhhccc------------cchh---hcC-------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 4443221 1111 111 111133444555555655554 3334445577777766544
Q ss_pred HHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 689 TKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 689 ~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~Elei~~-~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
=+=|..-|- |+-| +.. +.+ ..++ ......+-|.+|+.+-. -..+.-..++.+.--+++++.++.-|.+
T Consensus 475 CRIL~~RL~--K~~R-~q~--R~~---~~~~-~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~ 543 (852)
T KOG4787|consen 475 CRILNERLN--KLHR-KQV--RDG---EIQY-SDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAA 543 (852)
T ss_pred hHHHHHHHh--HHHH-HHH--hhh---hhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHH
Confidence 333333332 1111 111 000 0011 11222334555554441 2334555566666667777777777765
No 249
>PF12846 AAA_10: AAA-like domain
Probab=76.09 E-value=1.1 Score=49.89 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=16.2
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
|..++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 567888999999999998
No 250
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=75.84 E-value=1.5 Score=46.59 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.8
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|..++.+.+..++..|+.||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 4566677666666667899999999999
No 251
>PRK11281 hypothetical protein; Provisional
Probab=75.79 E-value=3e+02 Score=37.15 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001641 863 WEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (1039)
Q Consensus 863 ~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 913 (1039)
.++-.+|...-.+++.+..+....+.+...+....+.-.+.+.++-.+...
T Consensus 288 ~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l 338 (1113)
T PRK11281 288 LQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLL 338 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 344455566666677777666677777777555555555555554444333
No 252
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=75.66 E-value=2.3e+02 Score=35.90 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHH
Q 001641 646 REKELLKLKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 646 ~~kEi~qLk~~~rk~~~ei~~L~~ 669 (1039)
|+.||..|+.--|--+.-|.+|..
T Consensus 534 rDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 534 RDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455556666666666666666665
No 253
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.36 E-value=1.5 Score=48.90 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=21.6
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.+..++..-.+.|+-.|+||||||+||
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 445566656677888999999999999
No 254
>PRK06835 DNA replication protein DnaC; Validated
Probab=75.28 E-value=1.5 Score=50.39 Aligned_cols=28 Identities=29% Similarity=0.587 Sum_probs=21.5
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 70 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
...|+.+-.+. ..|+-||+||+||||.+
T Consensus 173 ~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 173 KNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 34666655444 66999999999999988
No 255
>PRK12704 phosphodiesterase; Provisional
Probab=74.42 E-value=2.2e+02 Score=35.04 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001641 622 KAQKVQLQNKIKQEAEQFR 640 (1039)
Q Consensus 622 k~~kv~L~k~mkee~~~~r 640 (1039)
...|..|++++++++..-.
T Consensus 153 ~ea~~~l~~~~~~~~~~~~ 171 (520)
T PRK12704 153 EEAKEILLEKVEEEARHEA 171 (520)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456667777776665443
No 256
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=74.39 E-value=2.6 Score=46.14 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=28.9
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhcCCCcc-EEeeccCCCCccccc
Q 001641 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT-VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~t-I~aYGqTGSGKTyTm 98 (1039)
...+|...+-+. +...+ ..-...++.|..+- |+.||..|+|||.++
T Consensus 23 ~~~l~~L~Gie~-Qk~~l-----~~Nt~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 23 PIRLDDLIGIER-QKEAL-----IENTEQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCCHHHhcCHHH-HHHHH-----HHHHHHHHcCCCCcceEEecCCCCCHHHHH
Confidence 355666665542 22222 22236777887553 677999999998887
No 257
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.10 E-value=1.5e+02 Score=32.83 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH
Q 001641 647 EKELLKLKKEGRKNEFERHKLE 668 (1039)
Q Consensus 647 ~kEi~qLk~~~rk~~~ei~~L~ 668 (1039)
..+|.+|.....+++.|...|+
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq 109 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQ 109 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554
No 258
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=73.63 E-value=2.2 Score=52.93 Aligned_cols=19 Identities=47% Similarity=0.665 Sum_probs=16.4
Q ss_pred CCccEEeeccCCCCccccc
Q 001641 80 YNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (1039)
-|-.|+.+|+||||||+-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 4667888999999999987
No 259
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=73.55 E-value=1.8e+02 Score=33.74 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001641 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKL 667 (1039)
Q Consensus 634 ee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L 667 (1039)
+++...+....+...+++++-++-+..+.++..|
T Consensus 123 ~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l 156 (499)
T COG4372 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTL 156 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 260
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=73.51 E-value=57 Score=36.99 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 001641 606 KSDEAAKRLQAEIQSI 621 (1039)
Q Consensus 606 k~e~~~~~L~~ei~~l 621 (1039)
....++..++.||.+|
T Consensus 281 ~~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 281 GFQEEAEKLQKEIQDL 296 (297)
T ss_dssp T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3344444445555444
No 261
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=73.15 E-value=1.7 Score=49.31 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=21.4
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 70 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..++..++.+ .+.|+..|+||||||++|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455556654 467888999999999998
No 262
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=72.55 E-value=1.9 Score=51.70 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=30.0
Q ss_pred ceeEEeceEeCCCCCCCcccccccchhhHHHh--hcC--CCccEEeeccCCCCccccc
Q 001641 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGL--FQG--YNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 45 ~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~v--l~G--~N~tI~aYGqTGSGKTyTm 98 (1039)
+..||||.-+.. .+ +...|. .+..+.... ..| ||. +|-||++|+||||.+
T Consensus 105 ~~~~tFdnFv~g-~~-N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 105 DPLMTFANFLVT-PE-NDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred CccccccceeeC-Cc-HHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 357999987743 23 333332 233333322 223 443 678999999999998
No 263
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.42 E-value=58 Score=39.91 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=9.2
Q ss_pred cchhHHHHHHHHHHHh
Q 001641 109 GLIPQVMNALFNKIET 124 (1039)
Q Consensus 109 Giipr~~~~LF~~i~~ 124 (1039)
|.|.++...|=+.+..
T Consensus 164 ~av~~~~reIee~L~~ 179 (652)
T COG2433 164 GAVKRVVREIEEKLDE 179 (652)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5556666665555554
No 264
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=72.41 E-value=1.8e+02 Score=33.16 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=30.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001641 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA 703 (1039)
Q Consensus 653 Lk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~ 703 (1039)
|..-.++.+.|-+.|+.+-+.-......|.||++..+++|.|++.-+..-.
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443344444456788899999999988887654433
No 265
>PRK08181 transposase; Validated
Probab=71.81 E-value=1.5 Score=49.02 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=16.6
Q ss_pred cCCCccEEeeccCCCCcccccc
Q 001641 78 QGYNATVLAYGQTGSGKTYTMG 99 (1039)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~ 99 (1039)
.|.| |+-||++|+||||-+.
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAA 124 (269)
T ss_pred cCce--EEEEecCCCcHHHHHH
Confidence 4555 8899999999999983
No 266
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=70.97 E-value=4.2e+02 Score=36.74 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=22.7
Q ss_pred cccCCCC--chhhhhhccCCCCceeEEEeecCCCCCCHHH
Q 001641 315 HVPYRDS--KLTRLLQDSLGGNSKTVMIACISPADINAEE 352 (1039)
Q Consensus 315 ~vPyRdS--kLTrLLqdsLGGns~t~mI~~vSP~~~~~~E 352 (1039)
.++|+-. .++.+|.++|.+-+... |..++-+..++++
T Consensus 196 ~Ls~~~~~~~l~~~l~~~l~~l~~~~-i~~l~e~~~~~~~ 234 (1353)
T TIGR02680 196 QLSKKPDEGVLSDALTEALPPLDDDE-LTDVADALEQLDE 234 (1353)
T ss_pred CCCCCCChHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHH
Confidence 5666655 58999999997755443 4444444444433
No 267
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=70.91 E-value=2 Score=49.18 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=20.6
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 70 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..++..++.+ ...|+..|.||||||++|
T Consensus 138 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455656655 466777799999999887
No 268
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=70.67 E-value=1.8 Score=45.91 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=21.9
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 70 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|...+-.|.+.+|+.||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 44555555677899999999999999988
No 269
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=70.42 E-value=1.6 Score=46.28 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.2
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4677899999999999
No 270
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.13 E-value=67 Score=34.51 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001641 577 TLKLKALEAQILELKKKQES 596 (1039)
Q Consensus 577 ekkL~eLE~el~~Lkkk~~~ 596 (1039)
+.+|.+||.|+.+|+.+..+
T Consensus 92 ~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677888888777744443
No 271
>PRK08939 primosomal protein DnaI; Reviewed
Probab=70.06 E-value=1.4 Score=50.10 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=28.5
Q ss_pred EEeceEeCCCCCCCcccccccchhhHHHhhcC-CCccEEeeccCCCCcccccc
Q 001641 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 99 (1039)
Q Consensus 48 F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G-~N~tI~aYGqTGSGKTyTm~ 99 (1039)
.+||.+-..+. ....++.. +...++....| ....|+-||++|+||||-+.
T Consensus 124 atf~~~~~~~~-~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDR-DRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCCh-HHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 45555432221 13334442 34455544433 23468999999999999993
No 272
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=69.69 E-value=6.2 Score=43.36 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=13.8
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|...|++|+|||.++
T Consensus 29 i~vvG~~~~GKSt~l 43 (240)
T smart00053 29 IAVVGGQSAGKSSVL 43 (240)
T ss_pred EEEEcCCCccHHHHH
Confidence 678899999999998
No 273
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=69.44 E-value=2.1 Score=54.43 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=20.7
Q ss_pred hhHHHhhc--CCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~--G~N~tI~aYGqTGSGKTyTm 98 (1039)
.++..++. |-+.+||.||+||+|||.|+
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 34445554 44556789999999999998
No 274
>PF13479 AAA_24: AAA domain
Probab=68.83 E-value=2 Score=46.07 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=16.2
Q ss_pred CccEEeeccCCCCcccccc
Q 001641 81 NATVLAYGQTGSGKTYTMG 99 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~ 99 (1039)
+..|+.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999999873
No 275
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=68.71 E-value=2.1 Score=41.22 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999987
No 276
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.65 E-value=3.2e+02 Score=34.40 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 722 EKSLQKWLEHELEVS------ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 722 ~~~~~~Wl~~Elei~------~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
....+-|=....+++ ..+-+..-++.+++..|+-+..+...|.+
T Consensus 363 ~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~ 412 (716)
T KOG4593|consen 363 ERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNR 412 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466655555555 23455555666677777777666666654
No 277
>PRK00106 hypothetical protein; Provisional
Probab=68.58 E-value=3e+02 Score=34.05 Aligned_cols=121 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 573 QDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLK 652 (1039)
Q Consensus 573 ke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~q 652 (1039)
+..-++-+.+.+.+-..+.++....++-.+.+.+.+.+ .++...+....+.++.-+.+..+....=..++..+.+
T Consensus 41 ~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEae-----eEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~Lek 115 (535)
T PRK00106 41 EQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAK-----EEARKYREEIEQEFKSERQELKQIESRLTERATSLDR 115 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1039)
Q Consensus 653 Lk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~ 698 (1039)
-...+.+++.++...+..-..++.-|.++.+++..........|+.
T Consensus 116 Ree~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~ 161 (535)
T PRK00106 116 KDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELER 161 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 278
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=68.56 E-value=2.5 Score=44.25 Aligned_cols=29 Identities=31% Similarity=0.325 Sum_probs=21.2
Q ss_pred chhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 69 v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..+++..++.. ...|+-.|+||||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 45556666654 455677899999999987
No 279
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=68.53 E-value=2.4 Score=44.24 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=18.6
Q ss_pred chhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 69 v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
+..+...-+-.-.-.++-||++|+||||..
T Consensus 35 ~~~l~~~~~~~~~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 35 IAQLAALEFIENGENLILYGPPGTGKTHLA 64 (178)
T ss_dssp HHHHHHH-S-SC--EEEEEESTTSSHHHHH
T ss_pred HHHHhcCCCcccCeEEEEEhhHhHHHHHHH
Confidence 344433333333445889999999999997
No 280
>PRK06921 hypothetical protein; Provisional
Probab=68.48 E-value=1.7 Score=48.47 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=16.0
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
...|+-||++|+||||.+
T Consensus 117 ~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 456888999999999998
No 281
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=68.39 E-value=2 Score=41.03 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.2
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999886
No 282
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.37 E-value=63 Score=35.72 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (1039)
Q Consensus 571 KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mk 633 (1039)
+-++.+++|..+||.|+..++ ..+..|+.||..|++.=++|--|+|
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~-----------------~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQ-----------------QTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999985554443 4566788888888888888655543
No 283
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=68.15 E-value=1.7 Score=44.59 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=13.3
Q ss_pred hcCCCccEEeeccCCCCccccc
Q 001641 77 FQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|-..+|+.+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 4566788999999999999987
No 284
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=68.12 E-value=2.5 Score=48.37 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=19.9
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.++..++.+ .+.|+..|.||||||++|
T Consensus 135 ~~L~~~v~~-~~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDS-RLNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 445555543 245788899999999999
No 285
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=68.07 E-value=57 Score=34.54 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 674 QKMVLQRKTEEAAIATKRLKELLEAR 699 (1039)
Q Consensus 674 q~~vL~rK~eE~~a~~krLke~Le~~ 699 (1039)
+-+++..|.+.+...++.|-+-+-.+
T Consensus 159 ~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666664444433
No 286
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.69 E-value=2.3e+02 Score=32.48 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001641 570 QKMQDGHTLKLKALEAQILELKKKQES 596 (1039)
Q Consensus 570 ~KLke~~ekkL~eLE~el~~Lkkk~~~ 596 (1039)
+.+......+...|+.++..|+.-..+
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344455566667777777777655554
No 287
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=66.60 E-value=2.6 Score=46.67 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=22.3
Q ss_pred cccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 62 SAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 62 ~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..+|.. +..++..+-. ...++-||++|+||||-.
T Consensus 89 ~~~l~~-~~~~~~~~~~--~~nl~l~G~~G~GKThLa 122 (254)
T COG1484 89 KKALED-LASLVEFFER--GENLVLLGPPGVGKTHLA 122 (254)
T ss_pred HHHHHH-HHHHHHHhcc--CCcEEEECCCCCcHHHHH
Confidence 444433 4455555543 344667999999999998
No 288
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=66.52 E-value=3.7 Score=40.47 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=32.2
Q ss_pred cEEee-ccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEE-----EeehhhhhhhHHhhhcC
Q 001641 83 TVLAY-GQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQL-----HVSFIEILKEEVRDLLD 150 (1039)
Q Consensus 83 tI~aY-GqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v-----~vS~~EIYnE~v~DLL~ 150 (1039)
.|+.+ |+||+||||+- ..+.+.||..--...--..|.. .-+.+.-|.+++.+.+.
T Consensus 54 LVlSfHG~tGtGKn~v~-------------~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~ 114 (127)
T PF06309_consen 54 LVLSFHGWTGTGKNFVS-------------RLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIR 114 (127)
T ss_pred EEEEeecCCCCcHHHHH-------------HHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHHH
Confidence 46654 99999999986 4467777764211100011111 22456778888777764
No 289
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=66.49 E-value=2.4e+02 Score=32.18 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccccccchhhhhhH
Q 001641 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA----ANSDGHTQKMQDGH 576 (1039)
Q Consensus 501 ~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~----~~~~~~~~KLke~~ 576 (1039)
.++-.+....|++.-+.++.+..........+..+.|.++...|..++++.+.|...+.... ........-+-+.+
T Consensus 47 r~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~ 126 (301)
T PF06120_consen 47 RQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHL 126 (301)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHH
Confidence 34444555555555555555543334444444556666666777777777776666664331 11111111121111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (1039)
Q Consensus 577 ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k 630 (1039)
..+.+....+..+..+.. ...........+....+..+..+..+.+.+++
T Consensus 127 -~~~~~~t~~la~~t~~L~---~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir 176 (301)
T PF06120_consen 127 -MSQADATRKLAEATRELA---VAQERLEQMQSKASETQATLNDLTEQRIDLIR 176 (301)
T ss_pred -HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344433333332221 12222234444666677777888888887664
No 290
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=66.41 E-value=3.9e+02 Score=34.61 Aligned_cols=65 Identities=29% Similarity=0.309 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 635 EAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA-------LNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1039)
Q Consensus 635 e~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~-------~~~~q~~vL~rK~eE~~a~~krLke~Le~~ 699 (1039)
...++.+.|...+||--.|++++.|+..|-.+-.. ...+..-+-..-++|....++||.+..+++
T Consensus 1076 q~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~ 1147 (1189)
T KOG1265|consen 1076 QTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKR 1147 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888887776333211 233334455666777788888887766544
No 291
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=66.38 E-value=1e+02 Score=33.71 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.3
Q ss_pred CcccCCCCchhhhhhccCCC
Q 001641 314 VHVPYRDSKLTRLLQDSLGG 333 (1039)
Q Consensus 314 ~~vPyRdSkLTrLLqdsLGG 333 (1039)
.+||--.++-||||-|.+.|
T Consensus 93 ~~v~a~e~~~~rll~d~i~n 112 (330)
T KOG2991|consen 93 AYVQALEGKYTRLLSDDITN 112 (330)
T ss_pred HHHHHhcCcccchhHHHHHh
Confidence 47888888999999988754
No 292
>PF15294 Leu_zip: Leucine zipper
Probab=66.10 E-value=1.1e+02 Score=34.22 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001641 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ 629 (1039)
Q Consensus 577 ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~ 629 (1039)
.+.+.+||..+..|+ .++.+.-...+...+.|.+.+..-|.....++
T Consensus 189 ~q~l~dLE~k~a~lK------~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Q 235 (278)
T PF15294_consen 189 AQDLSDLENKMAALK------SELEKALQDKESQQKALEETLQSCKHELLRVQ 235 (278)
T ss_pred ccchhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567888888888886 33444444444455555555555554444433
No 293
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=65.84 E-value=2.9 Score=47.80 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=21.4
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 70 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..++-.+..+. +.|+..|.||||||+++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 34455555555 77889999999999997
No 294
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=65.79 E-value=3 Score=46.86 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=22.6
Q ss_pred cccccchhhHHHhhcC-CCccEEeeccCCCCccccc
Q 001641 64 MFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 64 vy~~~v~plV~~vl~G-~N~tI~aYGqTGSGKTyTm 98 (1039)
++++.|-.++.+.+.| .---.+-||+.|+|||.|.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3334444444444444 4444678999999999998
No 295
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=65.64 E-value=2.8 Score=47.53 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.3
Q ss_pred cCC-CccEEeeccCCCCccccc
Q 001641 78 QGY-NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 78 ~G~-N~tI~aYGqTGSGKTyTm 98 (1039)
.|- ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 453 345666999999999988
No 296
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=65.61 E-value=3 Score=44.27 Aligned_cols=16 Identities=44% Similarity=0.650 Sum_probs=12.4
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
..+..|+.|||||+|+
T Consensus 19 ~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp -EEEE-STTSSHHHHH
T ss_pred CEEEECCCCCChHHHH
Confidence 4566899999999998
No 297
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=65.39 E-value=2.6 Score=52.64 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=32.2
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.-+||.+++.+ .. +..++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGqs-----~~----~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQE-----RA----IKALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeCc-----HH----HHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46888888542 12 334566667788888999999999999876
No 298
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.01 E-value=4e+02 Score=34.24 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=11.7
Q ss_pred eeeecCCCccccccCCCCc
Q 001641 264 HLVDLAGSERAKRTGSDGL 282 (1039)
Q Consensus 264 ~lVDLAGSEr~~kt~a~g~ 282 (1039)
.+.|-...+|.-.+.+.|.
T Consensus 371 L~~Dp~~~~ryy~~H~~Gv 389 (717)
T PF10168_consen 371 LHRDPLNPDRYYCYHNAGV 389 (717)
T ss_pred EEecCCCCceEEEEecCcc
Confidence 4467777777655555554
No 299
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.97 E-value=48 Score=42.74 Aligned_cols=7 Identities=14% Similarity=0.643 Sum_probs=3.5
Q ss_pred CcccCCC
Q 001641 314 VHVPYRD 320 (1039)
Q Consensus 314 ~~vPyRd 320 (1039)
.+||...
T Consensus 353 ~~Vpa~~ 359 (771)
T TIGR01069 353 IPIPANE 359 (771)
T ss_pred CCccCCc
Confidence 3555543
No 300
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=64.78 E-value=3.6 Score=44.08 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=17.1
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.++.++ .+-.|++.|+.||||||.-
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHH
Confidence 345555 5668899999999999886
No 301
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=64.72 E-value=3.7 Score=45.18 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.6
Q ss_pred hcCCCccEEeeccCCCCccccc
Q 001641 77 FQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (1039)
+....+.++-+|++|||||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3444567888999999999888
No 302
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=64.50 E-value=4.3 Score=41.29 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=18.5
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
++..+..+. ..++..|+||||||+++
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAA 41 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHH
Confidence 444555443 45567799999999988
No 303
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=64.48 E-value=3 Score=46.62 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=17.2
Q ss_pred hcCCCccEEeeccCCCCccccc
Q 001641 77 FQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (1039)
+.-.++.++..|..|||||+||
T Consensus 9 i~~~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 9 IRSTEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp HHS-SSEEEEEE-TTSSHHHHH
T ss_pred HhCCCCCEEEEeCCCCCchHHH
Confidence 3347888899999999999999
No 304
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=64.01 E-value=2.8 Score=44.42 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=13.0
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
.++.+|.||||||++|
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 6789999999999999
No 305
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=63.97 E-value=3.3e+02 Score=32.96 Aligned_cols=142 Identities=26% Similarity=0.282 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 573 QDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKV-QLQNKIKQEAEQFRQWKASREKELL 651 (1039)
Q Consensus 573 ke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv-~L~k~mkee~~~~r~~~~~~~kEi~ 651 (1039)
-+....+|+.++.++..|+.|.-- +|. |.- -...-+.+-+ .+.|++|.-..+.+. -.+||.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~l----lk~----Et~------~~~~keq~~y~~~~KelrdtN~q~~s----~~eel~ 222 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAML----LKT----ETL------TYEEKEQQLYGDCVKELRDTNTQARS----GQEELQ 222 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHH----HHh----hhc------chhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 455566777777766666644321 110 100 0112233444 555666665555443 456666
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHH
Q 001641 652 KLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEH 731 (1039)
Q Consensus 652 qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~ 731 (1039)
++-+++.+...|+.+|.+ |-.=+++|+......+..+.+.|..-+.+.+...
T Consensus 223 ~kt~el~~q~Ee~skLls----ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~------------------------ 274 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLS----QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT------------------------ 274 (596)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------------------------
Confidence 677777777777777765 2333678888888888888888877655543321
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 732 ELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 732 Elei~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
..++|.++.+...++.=+.-.+||..|+.
T Consensus 275 -----aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 275 -----AELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 12334555555555555566667777765
No 306
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.93 E-value=1.5e+02 Score=29.06 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=26.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 373 NRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYR 432 (1039)
Q Consensus 373 N~d~~~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~en~~L~~eL~e~r 432 (1039)
+..+....+.+|..+|..+..+ +..++.++..|+.+.+.+..|+-...
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E------------~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGE------------LASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666655555433 33455566666666666666655443
No 307
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=63.54 E-value=3.8 Score=47.25 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=19.1
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.++..++.+ .+.|+..|+||||||++|
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHHH
Confidence 344444443 345778899999999998
No 308
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=63.49 E-value=3 Score=48.29 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=19.1
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.++..+.. ..+.|+..|+||||||++|
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 34444443 3455788899999999998
No 309
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=63.46 E-value=3.1e+02 Score=32.42 Aligned_cols=40 Identities=35% Similarity=0.463 Sum_probs=24.1
Q ss_pred hHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 722 EKSLQKWLEH--ELEVSANVHEVRFKYEKQSQVQAALADELTI 762 (1039)
Q Consensus 722 ~~~~~~Wl~~--Elei~~~~~e~~~~~e~l~e~R~~l~~El~~ 762 (1039)
..+++.||.. |+|+- -..--+-..+.++...+.+++.|.+
T Consensus 334 P~aLQ~wLq~T~E~E~q-~~~kkrqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 334 PLALQKWLQLTHEVEVQ-YYNKKRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4589999865 45443 2233344556677777766666544
No 310
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=63.35 E-value=3.5 Score=46.97 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=26.4
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.-+||.+++. +.+ +..+...+-.|....++-||++|+|||++.
T Consensus 11 P~~~~~~~g~-----~~~----~~~L~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 11 PALLEDILGQ-----DEV----VERLSRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCcHHHhcCC-----HHH----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 3467777742 222 223333333454446889999999999988
No 311
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.23 E-value=2e+02 Score=30.11 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001641 613 RLQAEIQ 619 (1039)
Q Consensus 613 ~L~~ei~ 619 (1039)
.+...+.
T Consensus 134 ~l~~~~~ 140 (191)
T PF04156_consen 134 SLDESIK 140 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 312
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=63.08 E-value=2e+02 Score=30.04 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=12.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 001641 600 LLKQKHKSDEAAKRLQAEIQSIK 622 (1039)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~lk 622 (1039)
+.....+.+.++..|+.+|...|
T Consensus 129 i~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 129 IQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666666665443
No 313
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.74 E-value=1.6e+02 Score=38.19 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001641 537 IMELEEEKRIVQQERDRLL 555 (1039)
Q Consensus 537 l~eLEeei~~LqkErd~Ll 555 (1039)
|..|+++...++.+++++.
T Consensus 517 i~~L~~~~~~~e~~~~~~~ 535 (771)
T TIGR01069 517 IEKLSALEKELEQKNEHLE 535 (771)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333
No 314
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=62.35 E-value=3.2e+02 Score=32.27 Aligned_cols=52 Identities=29% Similarity=0.260 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhhhHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 648 KELLKLKKEGRKNEFERH------------K-LEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1039)
Q Consensus 648 kEi~qLk~~~rk~~~ei~------------~-L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~ 699 (1039)
|||.+|+.+++|.+.|+. + |+.-|+-.-+.+.+|-.-+....+.-+|+.|+-
T Consensus 309 kelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~ekl 373 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKL 373 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 699999999999999832 2 333555555556666555555555555555544
No 315
>PRK13764 ATPase; Provisional
Probab=62.34 E-value=3.8 Score=50.72 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.7
Q ss_pred HhhcCCCccEEeeccCCCCccccc
Q 001641 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 75 ~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..+......|+..|+||||||+++
T Consensus 251 ~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 251 ERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH
Confidence 333344556899999999999999
No 316
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=62.25 E-value=4.9 Score=50.70 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=25.4
Q ss_pred EEeceEeCCCCCCCcccccccchhhHHHhhcCC-CccEEeeccCCCCccccc
Q 001641 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 48 F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~-N~tI~aYGqTGSGKTyTm 98 (1039)
-+||.|++. +.+ +.-|...+-.|. .-.++-||+.|+|||.+.
T Consensus 13 qtFdEVIGQ-----e~V----v~~L~~aL~~gRL~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 13 KDFASLVGQ-----EHV----VRALTHALDGGRLHHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred CcHHHHcCc-----HHH----HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 367777753 222 333333333343 456788999999999875
No 317
>PRK06547 hypothetical protein; Provisional
Probab=62.17 E-value=4.4 Score=42.15 Aligned_cols=30 Identities=43% Similarity=0.446 Sum_probs=20.5
Q ss_pred chhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 69 v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
|..++..+..+.---|+.+|.+|||||+.-
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555555455555666799999999875
No 318
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.88 E-value=40 Score=34.79 Aligned_cols=59 Identities=27% Similarity=0.319 Sum_probs=28.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 494 ALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (1039)
Q Consensus 494 ~~~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~ 562 (1039)
...-..+..++.+|...+..+++++..+...-+ ..+|...|..++.|...+...|..+.
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t----------~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPT----------NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444431111 23455555555555666666666553
No 319
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=61.51 E-value=6.2 Score=47.42 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=33.4
Q ss_pred cEEeeccCCCCccccc---ccCCCCCCcccchhHHHHHHHHHHHhc
Q 001641 83 TVLAYGQTGSGKTYTM---GTGLREGFQTGLIPQVMNALFNKIETL 125 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm---~G~~~~~~~~Giipr~~~~LF~~i~~~ 125 (1039)
-||..|+|.|||||-- ++....+.-.|-+-....++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 3899999999999985 333345566777888889999988764
No 320
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.40 E-value=3.6e+02 Score=32.49 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 534 GKKIMELEEEKRIVQQERDRLLAEIEN 560 (1039)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~ 560 (1039)
...+..+..++..++.+...+...+..
T Consensus 171 ~~~~~~~~~~i~~~~~~~~~~~~~~~~ 197 (457)
T TIGR01000 171 EKTKAQLDQQISKTDQKLQDYQALKNA 197 (457)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443
No 321
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=60.75 E-value=20 Score=41.12 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=21.9
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 100 (1039)
.+|..++.|.+| +.+..||||||..+-.
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaL 63 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFAL 63 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhH
Confidence 356677899997 5677899999998844
No 322
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.69 E-value=4.8e+02 Score=33.73 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Q 001641 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-----------QVEL 600 (1039)
Q Consensus 532 ~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~-----------~~~l 600 (1039)
|++.-+.++-.+++.+..|.+......-. .+...-.|++..++.+|-++..++..+..+... -.+|
T Consensus 49 hld~aLkec~~qlr~~ree~eq~i~~~~~---~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l 125 (769)
T PF05911_consen 49 HLDGALKECMRQLRQVREEQEQKIHEAVA---KKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAEL 125 (769)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45566666666677666665554433221 222344566667777777777666655544332 2334
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH
Q 001641 601 LKQKHKSDEAAKRLQAEIQSIKAQK 625 (1039)
Q Consensus 601 ~k~k~k~e~~~~~L~~ei~~lk~~k 625 (1039)
.+.|...+.++..|..-++.+.+.-
T Consensus 126 ~~~~~~~e~~~~~l~~~l~~~eken 150 (769)
T PF05911_consen 126 SEEKSQAEAEIEDLMARLESTEKEN 150 (769)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444333
No 323
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=60.66 E-value=3.1e+02 Score=31.45 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhhHHHHHHHHH
Q 001641 617 EIQSIKAQKVQLQNKIKQEAEQFRQWKASRE----------KELLKLKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 617 ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~----------kEi~qLk~~~rk~~~ei~~L~~ 669 (1039)
.+..|..+-+.|-.++.-=+++|........ +|+..+-+..++-+.|-..+..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~ 265 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKS 265 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888999999988888776533 4444444444444444444443
No 324
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=60.46 E-value=3.5 Score=46.36 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=14.0
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
.|+-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999999
No 325
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=60.21 E-value=3.7 Score=40.36 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999886
No 326
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=60.18 E-value=3.6 Score=42.74 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.8
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999976
No 327
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=59.95 E-value=5.5 Score=41.79 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=19.5
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..++.++.|.| ++..++||+|||.+.
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 34455666877 577889999999884
No 328
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.93 E-value=60 Score=37.03 Aligned_cols=64 Identities=27% Similarity=0.265 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HH
Q 001641 596 SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEAL---NQ 672 (1039)
Q Consensus 596 ~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~---~~ 672 (1039)
.++-.+|++++.++++.+++.++..+|+.+.. |+.-..+-+.++.+|+.+ -+
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~Ee-------------------------L~~G~~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEE-------------------------LNIGKQKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------------------------HHhhHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888888888777 444444444444444441 22
Q ss_pred HHHHHHHHHHHH
Q 001641 673 RQKMVLQRKTEE 684 (1039)
Q Consensus 673 ~q~~vL~rK~eE 684 (1039)
++--||.+|.+|
T Consensus 267 ~niDIL~~k~~e 278 (365)
T KOG2391|consen 267 KNIDILKSKVRE 278 (365)
T ss_pred hhhHHHHHHHHH
Confidence 344589999988
No 329
>PRK09183 transposase/IS protein; Provisional
Probab=59.83 E-value=3.7 Score=45.60 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.1
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
.|+-||++|+||||.+
T Consensus 104 ~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 104 NIVLLGPSGVGKTHLA 119 (259)
T ss_pred eEEEEeCCCCCHHHHH
Confidence 3667999999999998
No 330
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=59.70 E-value=3.3 Score=39.26 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.8
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999988
No 331
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=59.70 E-value=13 Score=48.24 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=49.6
Q ss_pred ccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhh-hHHhhhcCCccccccccc
Q 001641 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILK-EEVRDLLDSVSVSKSVTA 160 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYn-E~v~DLL~~~~~~~~~~~ 160 (1039)
++++-+|+||+|||++. -.+...||. ...+.+.+.+-+... ..+..|+.+++..
T Consensus 597 ~~~lf~Gp~GvGKT~lA-------------~~La~~l~~-------~~~~~~~~dmse~~~~~~~~~l~g~~~gy----- 651 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA-------------LALAELLYG-------GEQNLITINMSEFQEAHTVSRLKGSPPGY----- 651 (852)
T ss_pred eEEEEECCCCCCHHHHH-------------HHHHHHHhC-------CCcceEEEeHHHhhhhhhhccccCCCCCc-----
Confidence 46888999999999987 123444552 123445555555432 2344454332210
Q ss_pred cCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcc
Q 001641 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGS 209 (1039)
Q Consensus 161 ~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~ 209 (1039)
.|... .+.-.-.++..|...+.+..+-...-.-..-++++|..|.
T Consensus 652 vg~~~----~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~ 696 (852)
T TIGR03345 652 VGYGE----GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGV 696 (852)
T ss_pred ccccc----cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcce
Confidence 01000 0000012344556667777765554444555666776663
No 332
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.57 E-value=3.9 Score=48.05 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=16.1
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
...|+.+|+||+|||+|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999999
No 333
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=59.49 E-value=3.8 Score=39.17 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=13.3
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999887
No 334
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=59.40 E-value=1.7e+02 Score=28.08 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 841 MGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLND 878 (1039)
Q Consensus 841 ~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~e 878 (1039)
-++.++.+..|..........+.+++.+|.|+...++.
T Consensus 39 kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 39 KDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666655555554444444444444444433
No 335
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=58.87 E-value=4.1 Score=44.75 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=15.5
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
--+|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 457899999999999875
No 336
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=58.69 E-value=3.9 Score=40.28 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999887
No 337
>PTZ00424 helicase 45; Provisional
Probab=58.57 E-value=5.2 Score=46.91 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=20.4
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..+..++.|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456667889884 56789999999875
No 338
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=58.54 E-value=2.8e+02 Score=30.30 Aligned_cols=141 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHhh
Q 001641 729 LEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNM 807 (1039)
Q Consensus 729 l~~Elei~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~ 807 (1039)
|++.+.-+ ..+.+++.++..++.....+..++..+.. ....-...++ .+|+.=-.
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~----------------------~~~k~e~~A~-~Al~~g~E- 84 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQA----------------------RAEKLEEKAE-LALQAGNE- 84 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHH-HHHHCCCH-
Q ss_pred cHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 808 SSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSE 887 (1039)
Q Consensus 808 ~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~ 887 (1039)
++ |+.+| ....+.+..+...+.++.++.+.+..|...+..++
T Consensus 85 -------------~L---------------------Ar~al----~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le 126 (225)
T COG1842 85 -------------DL---------------------AREAL----EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALE 126 (225)
T ss_pred -------------HH---------------------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccc-CCCCchhhhchhhhc
Q 001641 888 AQRKELVKQQRMREQAVTIALASSASGIQ-QGSSWRSSKHFADDM 931 (1039)
Q Consensus 888 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 931 (1039)
.+..++..........-+.+=++...... .|.++++.-+.+++|
T Consensus 127 ~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~ 171 (225)
T COG1842 127 QKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERM 171 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
No 339
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=58.46 E-value=4.5 Score=45.98 Aligned_cols=27 Identities=44% Similarity=0.722 Sum_probs=21.1
Q ss_pred hhHHHhhcCCC---ccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N---~tI~aYGqTGSGKTyTm 98 (1039)
|.+...+.|.- -|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 67778888763 45664 99999999888
No 340
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.33 E-value=3.1e+02 Score=30.70 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001641 680 RKTEEAAIATKRLKELLEAR 699 (1039)
Q Consensus 680 rK~eE~~a~~krLke~Le~~ 699 (1039)
.++.++...+...++.|..|
T Consensus 87 ~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 87 KEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544
No 341
>PHA00729 NTP-binding motif containing protein
Probab=58.04 E-value=5.4 Score=43.35 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=21.0
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 70 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..++..+..|--..|+.+|.+|+||||..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 44555555433347999999999999876
No 342
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.78 E-value=4.4 Score=47.39 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.7
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
...|+-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456778899999999998
No 343
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=57.70 E-value=3.1e+02 Score=30.57 Aligned_cols=69 Identities=22% Similarity=0.370 Sum_probs=36.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 492 EHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTE----ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1039)
Q Consensus 492 E~~~~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~----~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1039)
++..+..++..++..|..+++..++.+.+.. .+.. -+...|--+.....+-.+.++.-++...+++.++
T Consensus 71 eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~-~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel 143 (258)
T PF15397_consen 71 ELQEWEEKEESKLSKLQQQLEQLDAKIQKTQ-EELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666655543 2211 1333466555555555555555555555555544
No 344
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=57.26 E-value=1.9 Score=50.78 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.5
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 456899999999999876
No 345
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=57.23 E-value=3e+02 Score=30.26 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 001641 571 KMQDGHTLKLKALEAQILELK 591 (1039)
Q Consensus 571 KLke~~ekkL~eLE~el~~Lk 591 (1039)
.+....+..|.++|.+..+|.
T Consensus 45 E~EaelesqL~q~etrnrdl~ 65 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLE 65 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444443
No 346
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=57.07 E-value=5.5 Score=49.26 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=33.4
Q ss_pred CCCccEEeeccCCCCcccccccCCCC---------C-----CcccchhHHHHHHHHHHHhccc
Q 001641 79 GYNATVLAYGQTGSGKTYTMGTGLRE---------G-----FQTGLIPQVMNALFNKIETLRH 127 (1039)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm~G~~~~---------~-----~~~Giipr~~~~LF~~i~~~~~ 127 (1039)
-..+.|+-||+.|+||||..+.-... | ..-|--...+++||.+....++
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKP 761 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCC
Confidence 44567999999999999987321100 0 1236667789999998876543
No 347
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.07 E-value=2.9e+02 Score=30.00 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 799 ASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLND 878 (1039)
Q Consensus 799 ~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~e 878 (1039)
+-++......-+.+++..++|++...... .++.++.++-+.++..-..+..-...+...+.+++.++++++-
T Consensus 33 ~f~q~~r~~~~nS~~efar~lS~~~~e~e--------~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEv 104 (246)
T KOG4657|consen 33 SFIQSPRRRSMNSLVEFARALSQSQVELE--------NLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEV 104 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 879 LVALLKQSEAQRKELVKQQRMREQAVTIA 907 (1039)
Q Consensus 879 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 907 (1039)
+.+.++.++.++..+..-++...++.+-+
T Consensus 105 l~~n~Q~lkeE~dd~keiIs~kr~~~~Ka 133 (246)
T KOG4657|consen 105 LRRNLQLLKEEKDDSKEIISQKRQALSKA 133 (246)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
No 348
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=56.97 E-value=4.1 Score=47.30 Aligned_cols=51 Identities=16% Similarity=0.325 Sum_probs=33.0
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhc----CCCccEEeeccCCCCccccc
Q 001641 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ----GYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~----G~N~tI~aYGqTGSGKTyTm 98 (1039)
+++||++.+.-.. -..|.+.++-.++.+++. -.---|+-||+.|+|||+..
T Consensus 111 ~~~f~~~~g~~~~-~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 111 TRSFDNLVGGYYI-APAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hcchhhhcCcccc-CHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 4666776654332 345666666667777664 22334778999999998864
No 349
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=56.83 E-value=98 Score=37.21 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 860 FQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAV 904 (1039)
Q Consensus 860 ~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~ 904 (1039)
....++|.+|..++..++.+.+.+.+++.++++|+.+++..+..+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444455555544444444555555555555555555555554
No 350
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.76 E-value=4.9 Score=45.36 Aligned_cols=17 Identities=47% Similarity=0.683 Sum_probs=14.3
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
+-|+..||||||||+.-
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 46889999999999743
No 351
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=56.46 E-value=2.5e+02 Score=29.80 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=36.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001641 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALN 671 (1039)
Q Consensus 603 ~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~ 671 (1039)
.+.+.|..+..|...|.+|+.+...+ ...+....+||.+|+.....-..++..++..+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~-----------~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKL-----------KEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777666665542 22233334788888877777777766666543
No 352
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=56.24 E-value=9 Score=44.45 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=14.9
Q ss_pred CCccEEeeccCCCCccccc
Q 001641 80 YNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (1039)
-+..|+-.|++|||||+..
T Consensus 77 ~r~il~L~GPPGsGKStla 95 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3455778899999999764
No 353
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=56.24 E-value=1.5e+02 Score=26.86 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001641 642 WKASREKELLKLKKEGR 658 (1039)
Q Consensus 642 ~~~~~~kEi~qLk~~~r 658 (1039)
.|...+.||++|+.++.
T Consensus 58 mK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 58 MKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555555443
No 354
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=56.12 E-value=2.1e+02 Score=28.10 Aligned_cols=22 Identities=45% Similarity=0.478 Sum_probs=12.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH
Q 001641 600 LLKQKHKSDEAAKRLQAEIQSI 621 (1039)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~l 621 (1039)
|.+.-++.+.++..|+.+|..+
T Consensus 89 LekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 89 LEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666666666666654
No 355
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=55.65 E-value=2e+02 Score=32.59 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=3.5
Q ss_pred cccCCCCchhh
Q 001641 315 HVPYRDSKLTR 325 (1039)
Q Consensus 315 ~vPyRdSkLTr 325 (1039)
.||-=+|..+.
T Consensus 25 ~vP~iesa~~~ 35 (297)
T PF02841_consen 25 SVPCIESAWQA 35 (297)
T ss_dssp S--BHHHHHHH
T ss_pred CCCCchHHHHH
Confidence 35543343333
No 356
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=55.62 E-value=4e+02 Score=31.20 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 001641 502 KELNELNKRLEQKE 515 (1039)
Q Consensus 502 ~El~eL~kqLe~kE 515 (1039)
.++..+..++...+
T Consensus 81 ~~l~~l~~~~~~l~ 94 (423)
T TIGR01843 81 ADAAELESQVLRLE 94 (423)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444333
No 357
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=55.58 E-value=6.7 Score=47.17 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=19.8
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.+..+++|.| |++.++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 4556678887 778889999999775
No 358
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=55.45 E-value=6.2 Score=48.19 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=22.0
Q ss_pred chhhHHHhhcCCC--ccEEeeccCCCCccccc
Q 001641 69 VAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 69 v~plV~~vl~G~N--~tI~aYGqTGSGKTyTm 98 (1039)
|+..+...+.|.. ..++.+||+|||||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4455666665553 45678999999999998
No 359
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=55.40 E-value=2.8e+02 Score=29.45 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 001641 405 DEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (1039)
Q Consensus 405 ~e~q~L~eri~~Le~en~~L~~eL~e~r~rl~~~E~ 440 (1039)
.++..++.+|..|+.+.+.-+..+......+.++++
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq 39 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQ 39 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666666665555555555555555554443
No 360
>PRK10536 hypothetical protein; Provisional
Probab=55.33 E-value=6.9 Score=43.37 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.8
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
+..|++.|++||||||..
T Consensus 74 ~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 74 KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 358999999999999986
No 361
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=55.08 E-value=3.7 Score=45.08 Aligned_cols=12 Identities=58% Similarity=0.880 Sum_probs=11.3
Q ss_pred eccCCCCccccc
Q 001641 87 YGQTGSGKTYTM 98 (1039)
Q Consensus 87 YGqTGSGKTyTm 98 (1039)
.|++|||||+||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 499999999998
No 362
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=54.94 E-value=2.6e+02 Score=28.84 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFR 640 (1039)
Q Consensus 607 ~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r 640 (1039)
.+..-..|..+...|.....++|++.++-.++.+
T Consensus 122 lee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 122 LEEREAELKKEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666666677777777777666654
No 363
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=54.84 E-value=13 Score=47.62 Aligned_cols=60 Identities=27% Similarity=0.417 Sum_probs=37.2
Q ss_pred hHHHhhcCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHH
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEV 145 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v 145 (1039)
.+..+++|.|+.|+| |||||||-+- ++| +++.|+..-.....+.-+.++||=+---|..|
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA-----------fLp-il~~l~~~~~~~~~~~i~~lYIsPLkALn~Di 89 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA-----------FLP-VINELLSLGKGKLEDGIYALYISPLKALNNDI 89 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH-----------HHH-HHHHHHhccCCCCCCceEEEEeCcHHHHHHHH
Confidence 456678999999887 9999998775 233 45555543211112345677777766554443
No 364
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=54.83 E-value=5 Score=45.14 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
...||+|||||++-+
T Consensus 90 ~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEECCCCCCHHHHH
Confidence 456999999999987
No 365
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=54.79 E-value=3.8e+02 Score=30.73 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001641 535 KKIMELEEEKRIVQQERDRLLA 556 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~ 556 (1039)
.-|..||.++.+|--|...|++
T Consensus 201 ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666666556555554
No 366
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=54.77 E-value=5.3 Score=46.84 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
++.+|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 678999999999987
No 367
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=54.72 E-value=97 Score=38.08 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 839 RFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALL 883 (1039)
Q Consensus 839 ~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l 883 (1039)
.++.+....+.++.............++.++.+++.++..|+.+|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 124 PDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666555555555555555554444444444333
No 368
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.58 E-value=2.4e+02 Score=28.40 Aligned_cols=92 Identities=24% Similarity=0.294 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 574 DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL 653 (1039)
Q Consensus 574 e~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qL 653 (1039)
+....++..++.++..|+ ....+|...-...+.++..++.....++.+...+...+|.+.+.....+....-=-.|.
T Consensus 55 e~l~~~~~~l~~d~~~l~---~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~ 131 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQ---NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY 131 (151)
T ss_pred HHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554333333 22333334444445555555555555655555655666555555555555544445555
Q ss_pred HHhhhhhHHHHHHHH
Q 001641 654 KKEGRKNEFERHKLE 668 (1039)
Q Consensus 654 k~~~rk~~~ei~~L~ 668 (1039)
.-+.||++.|+.+|+
T Consensus 132 ~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 132 EHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666655
No 369
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=54.40 E-value=5.8 Score=43.91 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.4
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
...|+-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345788999999999987
No 370
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.86 E-value=69 Score=30.77 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 001641 386 QQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (1039)
Q Consensus 386 ~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~en~~L~~eL~e~r~rl~~~E~ 440 (1039)
..+..+...+... ..++..|+..+..|.++|..|+.|.+.++.++...+.
T Consensus 8 ~~l~~le~~l~~l-----~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQL-----LEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555443 5677788889999999999999999999998876654
No 371
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=53.83 E-value=3.6e+02 Score=30.10 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001641 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT---LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (1039)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e---kkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~ 613 (1039)
+.+|......|.+--..|...+..++..+..+..++=.+|. .-++-|+. ..-+..+..+.+|..++.+.+.++..
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~--~~~~~l~~ak~eLqe~eek~e~~l~~ 85 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEY--SNHKQLQQAKAELQEWEEKEESKLSK 85 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444455555555555666666664444444444433331 12222221 11123344467777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 001641 614 LQAEIQSIKAQKVQ 627 (1039)
Q Consensus 614 L~~ei~~lk~~kv~ 627 (1039)
|+.++..+++....
T Consensus 86 Lq~ql~~l~akI~k 99 (258)
T PF15397_consen 86 LQQQLEQLDAKIQK 99 (258)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776655444
No 372
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=53.00 E-value=17 Score=44.61 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCCCcEEecCCeEEEcCCHHHHHHHHHhcccCc
Q 001641 180 SSNGVITLAGSTEVAVNTLQEMAACLEQGSLSR 212 (1039)
Q Consensus 180 ~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R 212 (1039)
..+|.+++.++.+.+..--..++.+|..+.-.|
T Consensus 321 A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 321 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 345678888888888877788888887765444
No 373
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=52.88 E-value=7.7 Score=46.21 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.3
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.|..+++|-| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556778877 788899999999875
No 374
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=52.85 E-value=5.9 Score=43.03 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=17.5
Q ss_pred EEeeccCCCCccccc--ccCCCCCCcccc
Q 001641 84 VLAYGQTGSGKTYTM--GTGLREGFQTGL 110 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm--~G~~~~~~~~Gi 110 (1039)
|.-.|++|||||+-| .|+...+ ..|.
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~p-t~G~ 61 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDKP-TSGE 61 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC-CCce
Confidence 556799999999986 4544433 3443
No 375
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=52.68 E-value=3.2e+02 Score=29.17 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 616 AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKEL 695 (1039)
Q Consensus 616 ~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~ 695 (1039)
+++..++...-+.++..+.+..+...+-..++.-|..-...+.+++..+...+..-..+...|..+..++..........
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~ 139 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQE 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433334444444444455555555555555544455555555555555544444444
Q ss_pred HH
Q 001641 696 LE 697 (1039)
Q Consensus 696 Le 697 (1039)
|+
T Consensus 140 Le 141 (201)
T PF12072_consen 140 LE 141 (201)
T ss_pred HH
Confidence 44
No 376
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=52.35 E-value=5.5e+02 Score=31.90 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=6.7
Q ss_pred hhhhhhHHhhhc
Q 001641 138 IEILKEEVRDLL 149 (1039)
Q Consensus 138 ~EIYnE~v~DLL 149 (1039)
|-.||+.++|.+
T Consensus 25 yA~~n~~f~d~f 36 (582)
T PF09731_consen 25 YAKQNDNFRDFF 36 (582)
T ss_pred HhhcChHHHHHH
Confidence 334566666665
No 377
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=52.33 E-value=6.3 Score=46.13 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.0
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
..-|.-.||||.|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 455566799999999999
No 378
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=52.06 E-value=6.1 Score=41.82 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=13.9
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
-..||..|+.|||||+++
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 346788899999999887
No 379
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.04 E-value=4.9e+02 Score=31.14 Aligned_cols=268 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHH
Q 001641 502 KELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLK 581 (1039)
Q Consensus 502 ~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~ 581 (1039)
.++.+-+...+..+++++... ....++++. ..+..++..++..+.+-+.++.+.+..-++.-..-..+|.+.. +++-
T Consensus 234 eel~eq~eeneel~ae~kqh~-v~~~ales~-~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~-~~~~ 310 (521)
T KOG1937|consen 234 EELTEQNEENEELQAEYKQHL-VEYKALESK-RSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELN-KQME 310 (521)
T ss_pred HHHHhhhhhHHHHHHHHHHHH-HHHHHHHhh-hHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHH-HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHH
Q 001641 582 ALEAQILELKKKQESQVELLKQKHKSD-------EAAKRLQAEIQSIKAQKV---QLQNKIKQEAEQFRQ--WKASREKE 649 (1039)
Q Consensus 582 eLE~el~~Lkkk~~~~~~l~k~k~k~e-------~~~~~L~~ei~~lk~~kv---~L~k~mkee~~~~r~--~~~~~~kE 649 (1039)
+|..+..+-+.-..+....++-..+.. .+|..|..++...-.... .|-++++.++++--. .+.....-
T Consensus 311 ~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqr 390 (521)
T KOG1937|consen 311 ELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQR 390 (521)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHH
Q ss_pred HHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHH
Q 001641 650 LLKLKKEGRKNEFERHKLEA---LNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQ 726 (1039)
Q Consensus 650 i~qLk~~~rk~~~ei~~L~~---~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1039)
|..+-.-.||.+.+|.++.. .-++|.|++..+...-.|.+..|-=.-.+.--.-+++=+.
T Consensus 391 ikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykl----------------- 453 (521)
T KOG1937|consen 391 IKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKL----------------- 453 (521)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHH-----------------
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcccccCCCCCCCCCCCCcccccCChhHHHHHHHHHHHH
Q 001641 727 KWLEHELEVSANVHEVRFKYEKQSQVQAALADELTI--LKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENM 804 (1039)
Q Consensus 727 ~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~--Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~ 804 (1039)
+...-..+..+.|.-..++.+...=..++.++.. +++ +......|...
T Consensus 454 --lt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~----------------------------~l~slEkl~~D 503 (521)
T KOG1937|consen 454 --LTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQ----------------------------YLKSLEKLHQD 503 (521)
T ss_pred --HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHH----------------------------HHhhHHHHHHH
Q ss_pred HhhcHHHHHHHHHhh
Q 001641 805 LNMSSKALVEMASQL 819 (1039)
Q Consensus 805 ~~~~~~~i~~l~~ql 819 (1039)
++.-.+-...|.++|
T Consensus 504 yqairqen~~L~~~i 518 (521)
T KOG1937|consen 504 YQAIRQENDQLFSEI 518 (521)
T ss_pred HHHHHHHHHHHHHHH
No 380
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=51.34 E-value=8.2 Score=45.86 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=19.3
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.+..++.|.| |++-++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 3455678887 566779999999875
No 381
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.34 E-value=6.5e+02 Score=32.40 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHH-----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 576 HTLKLKALEAQILELKKKQES-QVELLKQKHKSDE-----AAK-------RLQAEIQSIKAQKVQLQNKIKQEAEQF 639 (1039)
Q Consensus 576 ~ekkL~eLE~el~~Lkkk~~~-~~~l~k~k~k~e~-----~~~-------~L~~ei~~lk~~kv~L~k~mkee~~~~ 639 (1039)
..++|.+++.++...+.+... ++++...+..... .+. .+...|++|+.+..++..++.+-+.++
T Consensus 235 ~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y 311 (754)
T TIGR01005 235 ATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTM 311 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 347788888777777643333 3333333322211 000 112456667777777666666655554
No 382
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=51.31 E-value=6.4 Score=33.91 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.8
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999877
No 383
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=51.31 E-value=7.3 Score=45.40 Aligned_cols=44 Identities=30% Similarity=0.499 Sum_probs=29.4
Q ss_pred EEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCcccc
Q 001641 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYT 97 (1039)
Q Consensus 48 F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyT 97 (1039)
-+||.|+| |+.+... ..|+-..+-.|--.+.+-||+.|+|||..
T Consensus 21 ~~lde~vG-----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 21 KSLDEVVG-----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CCHHHhcC-----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 35566664 3444433 34555555567777888899999999975
No 384
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=51.17 E-value=3.9 Score=47.34 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=31.0
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|.|+.|-|.+ + ...-|+..+.+-.-+.|+.+|.+||||||++
T Consensus 12 ~~~pf~~ivGq~-----~----~k~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQE-----E----MKLALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhChH-----H----HHHHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 379999998643 2 2344555555544456889999999999988
No 385
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=50.97 E-value=5.3e+02 Score=31.51 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=7.8
Q ss_pred ceeEEEeecCCCC
Q 001641 335 SKTVMIACISPAD 347 (1039)
Q Consensus 335 s~t~mI~~vSP~~ 347 (1039)
++..+|-+|.|..
T Consensus 49 ~~y~ii~~vd~~~ 61 (489)
T PF05262_consen 49 GRYYIIHAVDPEE 61 (489)
T ss_pred CcEEEEEecCccc
Confidence 4556666666653
No 386
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=50.96 E-value=5.1e+02 Score=31.09 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIE 559 (1039)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~ 559 (1039)
....+....|+.+++-+..+...+-..-..++ ....++..|+++.+.|+..--.+...+.
T Consensus 260 ~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~--k~s~~i~~l~ek~r~l~~D~nk~~~~~~ 319 (622)
T COG5185 260 LGFEKFVHIINTDIANLKTQNDNLYEKIQEAM--KISQKIKTLREKWRALKSDSNKYENYVN 319 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34455666677666665544433220001111 1335566666666665544444444333
No 387
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.72 E-value=5.4 Score=46.49 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=21.0
Q ss_pred chhhHHHhhcC-CCccEEeeccCCCCccccc
Q 001641 69 VAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 69 v~plV~~vl~G-~N~tI~aYGqTGSGKTyTm 98 (1039)
+..+...+-.| ..-+++-||+.|+|||++.
T Consensus 25 ~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 25 VTAISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred HHHHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 34444444444 4456789999999999877
No 388
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.45 E-value=5.3e+02 Score=32.86 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001641 577 TLKLKALEAQILELKKKQES 596 (1039)
Q Consensus 577 ekkL~eLE~el~~Lkkk~~~ 596 (1039)
.+++..|..++..|+++...
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~ 259 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKE 259 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666555555544443
No 389
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=50.22 E-value=6.7 Score=48.20 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=31.9
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
+..+|+.+++.+. .+..+...++.+....|+-||++|+|||+.-
T Consensus 60 rp~~f~~iiGqs~---------~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQEE---------GIKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcHH---------HHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4567888886531 2445555566677788999999999998765
No 390
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=50.10 E-value=4.5e+02 Score=30.23 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHH
Q 001641 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK--KKQESQVELLKQKHKSDEA 610 (1039)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lk--kk~~~~~~l~k~k~k~e~~ 610 (1039)
+..-+.+..+++..|..|.+.|.+.+.++. .| .|+ ++.++..+...-..+- .--.++..+...-++...+
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~q--GD---~Kl---LR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q 141 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQ--GD---IKL---LREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQ 141 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ch---HHH---HHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHH
Confidence 345556666667777666666666666542 11 111 1122222211111111 1114466666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 001641 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM---VLQRKTEEAAI 687 (1039)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~---vL~rK~eE~~a 687 (1039)
+..|+.+++.+---|.+ +..|-.-|+.--...+.|+..+=.-...+-..|-.|-+.+.-.+. .++....=+-+
T Consensus 142 ~~qLe~d~qs~lDEkeE----l~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~ 217 (319)
T PF09789_consen 142 IEQLERDLQSLLDEKEE----LVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788777777555555 456777777777778888888777766665567666664444333 34555555666
Q ss_pred HHHHHHHHHHHH
Q 001641 688 ATKRLKELLEAR 699 (1039)
Q Consensus 688 ~~krLke~Le~~ 699 (1039)
.+.+-|.+|+++
T Consensus 218 ~i~KYK~~le~k 229 (319)
T PF09789_consen 218 TINKYKSALERK 229 (319)
T ss_pred HHHHHHHHHHhh
Confidence 777888888864
No 391
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=50.08 E-value=6.7 Score=45.38 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=26.6
Q ss_pred cEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhh
Q 001641 83 TVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE 143 (1039)
.|+-||.+||||||++ +.+|+.. ..-.|.++++|-|.=
T Consensus 32 ~~~iyG~sgTGKT~~~-----------------r~~l~~~------n~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV-----------------RQLLRKL------NLENVWLNCVECFTY 69 (438)
T ss_pred eEEEeccCCCchhHHH-----------------HHHHhhc------CCcceeeehHHhccH
Confidence 3588999999999988 2344433 123478888888753
No 392
>PRK12704 phosphodiesterase; Provisional
Probab=49.92 E-value=5.8e+02 Score=31.45 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=7.1
Q ss_pred cccCcchhhhhhhc
Q 001641 1007 KWQKPWKLSEWIKH 1020 (1039)
Q Consensus 1007 ~~~~~~~~~~~~~~ 1020 (1039)
+|.-|..+...|.+
T Consensus 392 ~~~~~~~v~~aI~~ 405 (520)
T PRK12704 392 KYKESPVVINAIAA 405 (520)
T ss_pred HcCCCHHHHHHHHH
Confidence 44455555555443
No 393
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.76 E-value=42 Score=40.18 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001641 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (1039)
Q Consensus 578 kkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~ 624 (1039)
.++.+||++|+.|+ .+-..+.+.....+.+|+.|++|+..|+.|
T Consensus 76 ~kasELEKqLaaLr---qElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 76 VTAAQMQKQYEEIR---RELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHH---HHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45566666666663 222223355555666666766776666555
No 394
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.40 E-value=8.3 Score=43.16 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=19.4
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
+++.++.. +--|+-+|++|||||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444443 667788999999999877
No 395
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=49.25 E-value=5.7e+02 Score=31.10 Aligned_cols=59 Identities=29% Similarity=0.263 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHH
Q 001641 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLK-LKKEGRKNEFERHKLEA 669 (1039)
Q Consensus 606 k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~q-Lk~~~rk~~~ei~~L~~ 669 (1039)
+.-.++..+++|+..|-.+.|++.+++|.=...... -.+++| .+...|..+.|...|+.
T Consensus 223 ~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekee-----l~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEE-----LDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444567778888888888888888887765443332 222333 34555556666666664
No 396
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=49.11 E-value=28 Score=41.01 Aligned_cols=52 Identities=31% Similarity=0.397 Sum_probs=32.5
Q ss_pred cCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhhhcC
Q 001641 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLD 150 (1039)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~ 150 (1039)
.|.-+ +-+|+.|+||| || +..|++.+... ..++.+.|..+.=+-+++.|+..
T Consensus 168 kGQR~--lIvgppGvGKT-TL----------------aK~Ian~I~~n--hFDv~~~VvLIgER~~EVtdiqr 219 (416)
T PRK09376 168 KGQRG--LIVAPPKAGKT-VL----------------LQNIANSITTN--HPEVHLIVLLIDERPEEVTDMQR 219 (416)
T ss_pred cCceE--EEeCCCCCChh-HH----------------HHHHHHHHHhh--cCCeEEEEEEeCCchhHHHHHHH
Confidence 45555 44589999999 44 45577766553 23344444445446778888874
No 397
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=49.11 E-value=7.5 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.5
Q ss_pred cCCCccEEeeccCCCCccccc
Q 001641 78 QGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.|.-..++-||++|+|||++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 455557888999999999887
No 398
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=48.97 E-value=10 Score=45.67 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=20.2
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.|..+++|.| |++.++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4566778887 677889999999875
No 399
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=48.51 E-value=1.9e+02 Score=26.84 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 001641 574 DGHTLKLKALEAQILELK 591 (1039)
Q Consensus 574 e~~ekkL~eLE~el~~Lk 591 (1039)
..|++++.+|+.++..|.
T Consensus 45 ~rwek~v~~L~~e~~~l~ 62 (87)
T PF12709_consen 45 ARWEKKVDELENENKALK 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555554444443
No 400
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=48.29 E-value=11 Score=45.48 Aligned_cols=17 Identities=53% Similarity=0.751 Sum_probs=15.4
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56899999999999988
No 401
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=48.26 E-value=7.6 Score=46.06 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.5
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
+.-++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 456789999999999877
No 402
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=48.05 E-value=9.7 Score=48.16 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=20.4
Q ss_pred chhhHHHhhc-----CCCccEEeeccCCCCcccccc
Q 001641 69 VAPLVDGLFQ-----GYNATVLAYGQTGSGKTYTMG 99 (1039)
Q Consensus 69 v~plV~~vl~-----G~N~tI~aYGqTGSGKTyTm~ 99 (1039)
|..+++.+.. |.+..|+. -+||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 4556666665 34455544 489999999993
No 403
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.04 E-value=15 Score=40.78 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccccchhhHHHhh-cCCCccEEeeccCCCCccccc--------ccCCCCCCcccc
Q 001641 65 FGECVAPLVDGLF-QGYNATVLAYGQTGSGKTYTM--------GTGLREGFQTGL 110 (1039)
Q Consensus 65 y~~~v~plV~~vl-~G~N~tI~aYGqTGSGKTyTm--------~G~~~~~~~~Gi 110 (1039)
|+..-..||...+ +||.-.|+|.|.||-|||+.| .+.+.+...+++
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V 79 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNV 79 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCc
No 404
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=47.81 E-value=6.6 Score=45.84 Aligned_cols=34 Identities=15% Similarity=0.395 Sum_probs=24.6
Q ss_pred CcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 61 SSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 61 q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
|..+|+.++..+ .......+|..|+.|+||||.+
T Consensus 6 Q~~~~~~v~~~~----~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 6 QRRVFDTVIEAI----ENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHH----HccCCcEEEEEcCCCCChhHHH
Confidence 667777654433 3344556788999999999998
No 405
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=47.76 E-value=4.1e+02 Score=29.03 Aligned_cols=164 Identities=18% Similarity=0.243 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001641 534 GKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKM-QDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDE 609 (1039)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~~~~~---~~~~~~KL-ke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~ 609 (1039)
..+...|+..+...-++.+.+..++..+... .......+ -+..+++|.....++..++.. .+.....-.....
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~---l~~~~~~l~~~~~ 113 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQ---LQQENSQLIEIQT 113 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHc
Confidence 3455555555555555555566655554221 11111111 244456666666444444433 3333334444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHH
Q 001641 610 AAKRLQAEIQSIKAQKVQLQNKIK-------QEAEQFRQWKASREKELLKLKKEGRKNEFE-RHKLEALNQRQKMVLQRK 681 (1039)
Q Consensus 610 ~~~~L~~ei~~lk~~kv~L~k~mk-------ee~~~~r~~~~~~~kEi~qLk~~~rk~~~e-i~~L~~~~~~q~~vL~rK 681 (1039)
....++..|.+.....-++-..+. ......+.|...-+.....++-..-..+-. ...+......+...+..+
T Consensus 114 ~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~ 193 (240)
T PF12795_consen 114 RPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKAR 193 (240)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777776 455667777766666654444433333322 344555778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001641 682 TEEAAIATKRLKELLEARK 700 (1039)
Q Consensus 682 ~eE~~a~~krLke~Le~~k 700 (1039)
+..+...+.-|++.+-.++
T Consensus 194 ~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 194 IQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888775543
No 406
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=47.73 E-value=7.7 Score=42.01 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=16.2
Q ss_pred CccEEeeccCCCCcccccc
Q 001641 81 NATVLAYGQTGSGKTYTMG 99 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~ 99 (1039)
...++-||..|+|||++..
T Consensus 12 ~~~~liyG~~G~GKtt~a~ 30 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIK 30 (220)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4558999999999999873
No 407
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=47.63 E-value=6.3e+02 Score=31.19 Aligned_cols=168 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 001641 612 KRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA-----LNQRQKMVLQRKTEEAA 686 (1039)
Q Consensus 612 ~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~-----~~~~q~~vL~rK~eE~~ 686 (1039)
++|+.|| -++.||+.|-.+-|.. =..++.+ +.++-+.=|+|.+..++
T Consensus 4 RKLq~eI-------dr~lkKv~Egve~Fd~---------------------i~ek~~~~~n~sqkeK~e~DLKkEIKKLQ 55 (575)
T KOG2150|consen 4 RKLQQEI-------DRCLKKVDEGVEIFDE---------------------IYEKLHSANNVSQKEKLESDLKKEIKKLQ 55 (575)
T ss_pred hHHHHHH-------HHHHHHhhhhHHHHHH---------------------HHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 687 IATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (1039)
Q Consensus 687 a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~ 766 (1039)
||++ -|+.|+.-. |.++. ..|+.-|+-++..++..|.+
T Consensus 56 ----RlRd-----------------------------QIKtW~ss~--------dIKDK-~~L~d~RrlIE~~MErfK~v 93 (575)
T KOG2150|consen 56 ----RLRD-----------------------------QIKTWQSSS--------DIKDK-DSLLDNRRLIEQRMERFKAV 93 (575)
T ss_pred ----HHHH-----------------------------HHHhhhccc--------ccccH-HHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHH
Q 001641 767 DQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKN 846 (1039)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~ 846 (1039)
...... -+-.+.|......++|..+..+ +.+.--+++|.+|+.|++..|.
T Consensus 94 Eke~Kt---Ka~SkegL~~~~klDPkEkek~-----d~~~wi~~~ideLe~q~d~~ea---------------------- 143 (575)
T KOG2150|consen 94 EKEMKT---KAFSKEGLSAAEKLDPKEKEKR-----DTMDWISNQIDELERQVDSFEA---------------------- 143 (575)
T ss_pred HHHhhc---cccchhhccccccCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 847 LLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQ 902 (1039)
Q Consensus 847 ~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~ 902 (1039)
.+++..+.--.-....++..+..|.+..-..+.
T Consensus 144 -----------------------~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~ 176 (575)
T KOG2150|consen 144 -----------------------EELERFIERHRWHQQKLELILRLLDNDELDPEA 176 (575)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHhhccccCHHH
No 408
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=47.51 E-value=7.5 Score=45.29 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.5
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
...|+-||++|+|||++.
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345899999999999887
No 409
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=47.29 E-value=9.3 Score=43.09 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.0
Q ss_pred cCCCccEEeeccCCCCccccc
Q 001641 78 QGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 454455788999999999887
No 410
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=47.27 E-value=2.7e+02 Score=26.77 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 001641 577 TLKLKALE 584 (1039)
Q Consensus 577 ekkL~eLE 584 (1039)
+-+|..|+
T Consensus 15 ~n~La~Le 22 (107)
T PF09304_consen 15 QNRLASLE 22 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 411
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.21 E-value=98 Score=33.79 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 665 HKLEALNQRQKMVLQRKTEEAAIATKRL 692 (1039)
Q Consensus 665 ~~L~~~~~~q~~vL~rK~eE~~a~~krL 692 (1039)
..|+..|.-....|++|++|+.-++..|
T Consensus 266 ~~~ek~Hke~v~qL~~k~~~~lk~~a~l 293 (305)
T KOG3990|consen 266 KELEKKHKERVQQLQKKKEESLKAIAQL 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666778888876544444
No 412
>PRK04328 hypothetical protein; Provisional
Probab=47.03 E-value=12 Score=41.31 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=22.0
Q ss_pred hhHHHhhcC---CCccEEeeccCCCCcccc
Q 001641 71 PLVDGLFQG---YNATVLAYGQTGSGKTYT 97 (1039)
Q Consensus 71 plV~~vl~G---~N~tI~aYGqTGSGKTyT 97 (1039)
|-+|.++.| ...+++.+|++|||||.-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 457888876 588889999999999754
No 413
>PF14282 FlxA: FlxA-like protein
Probab=46.96 E-value=83 Score=30.07 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001641 535 KKIMELEEEKRIVQQERD 552 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd 552 (1039)
..|..|+.+|..|+.+..
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~ 36 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQ 36 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 414
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=46.85 E-value=19 Score=44.29 Aligned_cols=67 Identities=18% Similarity=0.350 Sum_probs=37.6
Q ss_pred eceEeCCCCCCCcccccccchhhHHHhh--cCCCccEEeeccCCCCcc---------------ccccc----CCCCCCcc
Q 001641 50 FDHVYGNGGSPSSAMFGECVAPLVDGLF--QGYNATVLAYGQTGSGKT---------------YTMGT----GLREGFQT 108 (1039)
Q Consensus 50 FD~VF~~~~s~q~~vy~~~v~plV~~vl--~G~N~tI~aYGqTGSGKT---------------yTm~G----~~~~~~~~ 108 (1039)
|+.+||. +++-+.+|..+...+. ..-...++-.||+|+||| |++-| ++-...-.
T Consensus 75 F~d~yGl-----ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 75 FEEFYGM-----EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPL 149 (644)
T ss_pred hhcccCc-----HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCC
Confidence 5667753 3444444544433332 334455667799999999 45544 22233445
Q ss_pred cch-hHHHHHHHHH
Q 001641 109 GLI-PQVMNALFNK 121 (1039)
Q Consensus 109 Gii-pr~~~~LF~~ 121 (1039)
|+| |.-...+|..
T Consensus 150 ~L~p~~~~~~~le~ 163 (644)
T PRK15455 150 GLFDPDEDGPILEE 163 (644)
T ss_pred CCCChhhhHHHHHH
Confidence 888 4456666643
No 415
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=46.82 E-value=10 Score=43.17 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=19.7
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 70 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.+++..++.+. .+|+-.|+||||||+.|
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 34455555433 46677799999999987
No 416
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=46.77 E-value=7.9 Score=38.32 Aligned_cols=15 Identities=53% Similarity=0.853 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
++-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 567999999999987
No 417
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=46.74 E-value=5e+02 Score=29.77 Aligned_cols=43 Identities=26% Similarity=0.188 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001641 660 NEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSS 702 (1039)
Q Consensus 660 ~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~ 702 (1039)
.+.++.++-.........|+-+.+......+-||+..+.-|..
T Consensus 239 teaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkei 281 (561)
T KOG1103|consen 239 TEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEI 281 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555566555554443
No 418
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.67 E-value=7.9 Score=42.23 Aligned_cols=118 Identities=18% Similarity=0.240 Sum_probs=61.6
Q ss_pred ceEEEEEeCCCCcchhccCC---------ceEEEEeCCCcc--eee-C---ceeEEeceEeCCCCCCCcccccccchhhH
Q 001641 9 SVKVAVHVRPLIGDERAQGC---------KECVAVTHGNPQ--VQI-G---THSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (1039)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~---------~~~v~v~~~~~~--v~~-~---~~~F~FD~VF~~~~s~q~~vy~~~v~plV 73 (1039)
.-.-+|||-....+|....+ ...|.|.|.+.. +.+ + ....+|..|=+-+. +-++|-+.+--|+.
T Consensus 98 gsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~-qkqeireavelplt 176 (408)
T KOG0727|consen 98 GSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDV-QKQEIREAVELPLT 176 (408)
T ss_pred CCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchh-hHHHHHHHHhccch
Confidence 34567888877777753221 112233332221 111 1 12344444444332 23455555555666
Q ss_pred HHhhc---CCC--ccEEeeccCCCCccccccc-------CC----CC---CCcccchhHHHHHHHHHHHhccc
Q 001641 74 DGLFQ---GYN--ATVLAYGQTGSGKTYTMGT-------GL----RE---GFQTGLIPQVMNALFNKIETLRH 127 (1039)
Q Consensus 74 ~~vl~---G~N--~tI~aYGqTGSGKTyTm~G-------~~----~~---~~~~Giipr~~~~LF~~i~~~~~ 127 (1039)
..-+- |.+ -.|+.||+.|+|||...-. .| ++ ..-.|==||.++++|.......+
T Consensus 177 ~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenap 249 (408)
T KOG0727|consen 177 HADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 249 (408)
T ss_pred HHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCC
Confidence 54431 443 4589999999999854310 00 00 01236669999999998766433
No 419
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=46.54 E-value=7.8 Score=40.11 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.3
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
+..+-||++|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 44567999999999988
No 420
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=46.31 E-value=5.8e+02 Score=30.39 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 594 QESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (1039)
Q Consensus 594 ~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~ 641 (1039)
..+-.+|...+.+++++-..+..++.++...++++-.++-+=...|..
T Consensus 189 ~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~ 236 (447)
T KOG2751|consen 189 KEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNN 236 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666677777777777777765555444444433
No 421
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.20 E-value=3.2e+02 Score=28.95 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----H
Q 001641 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEA-----A 611 (1039)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~-----~ 611 (1039)
+..+.+++..+-.--..|....-.....+.-.....+..+..++.+|+.++..|+.+...-..-...-.+...+ .
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001641 612 KRLQAEIQSIKAQKVQLQNKIK 633 (1039)
Q Consensus 612 ~~L~~ei~~lk~~kv~L~k~mk 633 (1039)
+..++||..+|++-.+|-.+++
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 422
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=46.19 E-value=6.8e+02 Score=31.14 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001641 840 FMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALA 909 (1039)
Q Consensus 840 s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~ 909 (1039)
-+.++...+..|...+...+..+.....++.+ ....+..+......+.....+-|+.+=|+=|
T Consensus 445 ~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~-------a~~~v~~L~~~t~~li~~A~L~E~~iQYaNR 507 (560)
T PF06160_consen 445 YFFDVSDEIEELSDELNQVPINMDEVNKQLEE-------AEDDVETLEEKTEELIDNATLAEQLIQYANR 507 (560)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555554444444444443 4444444555555555555555555555443
No 423
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.09 E-value=5.1e+02 Score=29.64 Aligned_cols=81 Identities=27% Similarity=0.288 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATK 690 (1039)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~k 690 (1039)
...|-.-|+.+++.|..|+.+.-.|-+--.. ...|-|.||+.+--..+ ..|+...+..-+.|++++..+.+...
T Consensus 79 sN~LlKkl~~l~keKe~L~~~~e~EEE~ltn---~L~rkl~qLr~EK~~lE---~~Le~EqE~~V~kL~k~i~~Le~e~~ 152 (310)
T PF09755_consen 79 SNTLLKKLQQLKKEKETLALKYEQEEEFLTN---DLSRKLNQLRQEKVELE---NQLEQEQEYLVNKLQKKIERLEKEKS 152 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666544433332 23334444443322211 23444455556678888888876665
Q ss_pred HHHHHHH
Q 001641 691 RLKELLE 697 (1039)
Q Consensus 691 rLke~Le 697 (1039)
.+...|+
T Consensus 153 ~~q~~le 159 (310)
T PF09755_consen 153 AKQEELE 159 (310)
T ss_pred HhHHHHH
Confidence 5555555
No 424
>PRK04195 replication factor C large subunit; Provisional
Probab=45.98 E-value=11 Score=45.72 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=21.6
Q ss_pred chhhHHHhhcCC-CccEEeeccCCCCccccc
Q 001641 69 VAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 69 v~plV~~vl~G~-N~tI~aYGqTGSGKTyTm 98 (1039)
+...+.....|. ...++.||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344444444554 567888999999999887
No 425
>PF15456 Uds1: Up-regulated During Septation
Probab=45.81 E-value=2.1e+02 Score=28.21 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 858 TRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTI 906 (1039)
Q Consensus 858 ~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~ 906 (1039)
++-...+.+.++.++..+++++...|..++.++.+++.-+-.+--+|..
T Consensus 72 ~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~AavL~ 120 (124)
T PF15456_consen 72 SRESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLEHTAAVLQ 120 (124)
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999999988776666655543
No 426
>PF05729 NACHT: NACHT domain
Probab=45.81 E-value=8.9 Score=38.29 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.3
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
.|+.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999988
No 427
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=45.80 E-value=10 Score=43.78 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=22.7
Q ss_pred chhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 69 v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
...++..++.+ .+.|+..|.||||||.+|
T Consensus 167 ~~~~L~~~v~~-~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAA-RLAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhC-CCeEEEECCCCCCHHHHH
Confidence 45566666665 478888999999999987
No 428
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=45.80 E-value=9.3 Score=45.63 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCCceeEEEeecCCCCCCHHHHHHHHHHHHH--hhcccCcc
Q 001641 331 LGGNSKTVMIACISPADINAEESLNTLKYANR--ARNIQNKP 370 (1039)
Q Consensus 331 LGGns~t~mI~~vSP~~~~~~ETl~TLrfa~r--ar~Iknkp 370 (1039)
+.-..+..+|||+..++.+ +..|.+|-+ ..-|.-.|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecC
Confidence 4456899999999998864 445666544 33344444
No 429
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=45.68 E-value=5.8e+02 Score=30.21 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=32.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001641 602 KQKHKSDEAAKRLQAEIQSIKAQKVQLQNK---IKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1039)
Q Consensus 602 k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~---mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L~ 668 (1039)
.++.+.++++-+|+.++++-.++-..+.-+ ++.|++--+..=..+|-||..|+++.+..-.+..+..
T Consensus 6 s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~ 75 (459)
T KOG0288|consen 6 SQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREE 75 (459)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333332222 2334444444444566666667777666666655543
No 430
>PF14282 FlxA: FlxA-like protein
Probab=45.51 E-value=85 Score=30.01 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 609 EAAKRLQAEIQSIKAQKVQLQNKI 632 (1039)
Q Consensus 609 ~~~~~L~~ei~~lk~~kv~L~k~m 632 (1039)
.++..|+.+|..|.++..+|..+.
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666555544433
No 431
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=45.50 E-value=6.6e+02 Score=30.78 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=11.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 001641 570 QKMQDGHTLKLKALEAQILELK 591 (1039)
Q Consensus 570 ~KLke~~ekkL~eLE~el~~Lk 591 (1039)
..++.-|..|+.+|-.++....
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~ad 433 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHAD 433 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666654444333
No 432
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=45.50 E-value=6.1e+02 Score=30.38 Aligned_cols=70 Identities=27% Similarity=0.344 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhh-----------------ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--------HHH
Q 001641 545 RIVQQERDRLLAEIENLA-----------------ANSDGHTQKMQDGHTLKLKALEAQILELKKKQES--------QVE 599 (1039)
Q Consensus 545 ~~LqkErd~Ll~~l~~~~-----------------~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~--------~~~ 599 (1039)
+.--.||++|+..|+..+ .+..+-..|-.+.-..-|++|..|+.+|.+-.=+ +.=
T Consensus 99 ea~p~er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~~~~lekq~e~qkeLi~QLk~Ql~dLE~~AYe~Geg~LPq~vi 178 (621)
T KOG3759|consen 99 EADPSERLKLLRDLEDFAFKGCPDMNELQRLRSESESGNDVLEKQNERQKELIKQLKEQLEDLERTAYENGEGELPQTVI 178 (621)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcccccccccccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHH
Confidence 333467777777777641 1122222333444445567777777777643222 444
Q ss_pred HHHHHhhhHHHHHHH
Q 001641 600 LLKQKHKSDEAAKRL 614 (1039)
Q Consensus 600 l~k~k~k~e~~~~~L 614 (1039)
|+|+|.=.++-..+|
T Consensus 179 LekQk~ilDeLr~Kl 193 (621)
T KOG3759|consen 179 LEKQKAILDELREKL 193 (621)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555444444433
No 433
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.47 E-value=3.4e+02 Score=27.95 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhhhhhHHHHHHHHHHHHHHHH
Q 001641 537 IMELEEEKRIVQQERDRLLAEIENLAAN-SDGHTQKMQDGHTLKLKALEAQILELK 591 (1039)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~~~~-~~~~~~KLke~~ekkL~eLE~el~~Lk 591 (1039)
+.+|.+++..+..+.+.|..++.++... +...+...-...+..+..|+..|..|+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555554221 222222222333444444444444444
No 434
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=45.37 E-value=1.1e+02 Score=29.84 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 844 AKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQ 897 (1039)
Q Consensus 844 Ak~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~~~~~~l~~~~ 897 (1039)
|...++||+..-...-.....++.+++.+..++..+...+.....+...|..|.
T Consensus 64 aQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778887776666667777888888888888888877777777777776654
No 435
>PF13173 AAA_14: AAA domain
Probab=45.25 E-value=9.4 Score=37.25 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.4
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
.++-+|+.|+|||+.+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999998
No 436
>PLN03025 replication factor C subunit; Provisional
Probab=45.14 E-value=11 Score=43.13 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=15.7
Q ss_pred CCCccEEeeccCCCCccccc
Q 001641 79 GYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (1039)
|.-..++-||+.|+|||++.
T Consensus 32 ~~~~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSI 51 (319)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33334677999999999998
No 437
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.07 E-value=1.6e+02 Score=31.37 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 001641 606 KSDEAAKRLQAEIQSIKAQKVQ 627 (1039)
Q Consensus 606 k~e~~~~~L~~ei~~lk~~kv~ 627 (1039)
.....++...++|..++.|---
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~ 178 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDG 178 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 3344455555566555555444
No 438
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=44.89 E-value=10 Score=40.13 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=18.7
Q ss_pred HHhhcCC---CccEEeeccCCCCccccc
Q 001641 74 DGLFQGY---NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 74 ~~vl~G~---N~tI~aYGqTGSGKTyTm 98 (1039)
|.++.|- +..+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4445443 567889999999999775
No 439
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=44.83 E-value=5.4e+02 Score=29.56 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001641 743 RFKYEKQSQVQAALADELTILKQ 765 (1039)
Q Consensus 743 ~~~~e~l~e~R~~l~~El~~Lk~ 765 (1039)
+..+++.-.-.+.+.+|...||.
T Consensus 258 RAel~ree~r~K~lKeEmeSLke 280 (561)
T KOG1103|consen 258 RAELEREEKRQKMLKEEMESLKE 280 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443334445555556654
No 440
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.65 E-value=13 Score=44.83 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=20.4
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..|..++.|.| +++..+||||||.+.
T Consensus 18 ~ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 45677888987 566689999999864
No 441
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.61 E-value=9.3 Score=45.57 Aligned_cols=17 Identities=47% Similarity=0.601 Sum_probs=14.6
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
..|+-.|+||+|||+|+
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35677799999999998
No 442
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=44.40 E-value=12 Score=40.20 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=22.8
Q ss_pred hhhHHHhhcC---CCccEEeeccCCCCccccc
Q 001641 70 APLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 70 ~plV~~vl~G---~N~tI~aYGqTGSGKTyTm 98 (1039)
-|-+|.++.| ...++.-||++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3557778875 4667788999999999876
No 443
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.01 E-value=7.8e+02 Score=31.21 Aligned_cols=291 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL----AANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQ 603 (1039)
Q Consensus 528 ~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~----~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~ 603 (1039)
.+-..+-.++...=+++-....|++.++..|+.. --...+.+.+-+....+.|.+.|.++.+|-....+......
T Consensus 14 ~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~- 92 (660)
T KOG4302|consen 14 ATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE- 92 (660)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHH-
Q 001641 604 KHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKL---EALNQRQKMVLQ- 679 (1039)
Q Consensus 604 k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~rk~~~ei~~L---~~~~~~q~~vL~- 679 (1039)
..++.-..|.+.+..+.....+|.++-.+-..+|.. +..+..+--.+|.-- -.....-...|-
T Consensus 93 --~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~e-----------l~~qie~l~~~l~g~~~~~~~~~~D~~dlsl 159 (660)
T KOG4302|consen 93 --ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKE-----------LYHQIEKLCEELGGPEDLPSFLIADESDLSL 159 (660)
T ss_pred --cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcCCccCCcccccCcccccH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHH
Q 001641 680 RKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQA-ALAD 758 (1039)
Q Consensus 680 rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~-~l~~ 758 (1039)
+|+++..+.+..|.+.-..| +..-+++...|+..-..|+-.-..-. ....
T Consensus 160 ~kLeelr~~L~~L~~ek~~R-----------------------------lekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~ 210 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDR-----------------------------LEKVLELKEEIKSLCSVLGLDFSMTVTDVEP 210 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHhCCCcccchhhhhh
Q ss_pred HHHHHHhhcccccCCCCCCCCCCCCcccccCCh---hHHHHHHHHHHHHHhhcHHHHHHHHHhhHHHHHHHHhhhccccc
Q 001641 759 ELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSP---NARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRW 835 (1039)
Q Consensus 759 El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~ 835 (1039)
-|..--..... .+++ +...+.+..|.++....-+-+.+|..++.++ |
T Consensus 211 sL~~~~~~~~~------------------~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~L------------W 260 (660)
T KOG4302|consen 211 SLVDHDGEQSR------------------SISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLEL------------W 260 (660)
T ss_pred hhhhccCcccc------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
Q ss_pred chhccHHHHHHHHHH-------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 836 NHLRFMGDAKNLLQY-------MFNVAAETRFQLWEKD-TEIKEIKEQLNDLVALLKQSEAQRKEL 893 (1039)
Q Consensus 836 ~~~~s~~EAk~~Lk~-------l~~~~~~~r~~~~~~e-~ql~El~~k~~el~~~l~~~~~~~~~l 893 (1039)
+...+-.|=.....+ --+.++......++.| ..+.+++... +...+.+...+++++
T Consensus 261 n~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~--mKeli~k~r~Eleel 324 (660)
T KOG4302|consen 261 NLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASN--MKELIEKKRSELEEL 324 (660)
T ss_pred HhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
No 444
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=43.76 E-value=4e+02 Score=31.48 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=16.8
Q ss_pred hccccccccccccchhhccC-CCCcceeeecccc
Q 001641 966 QTRKMVPVGHLSMKKLATVG-QPGKLWRWKRSHH 998 (1039)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 998 (1039)
-++-.+.|| ..+++.| ..|.+.-|-...-
T Consensus 390 wtrvvfSpd----~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 390 WTRVVFSPD----GSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred cceeEECCC----CceeeeccCCCcEEEEEccCc
Confidence 344444444 4444555 7888888866543
No 445
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=43.72 E-value=4.5e+02 Score=28.36 Aligned_cols=137 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHhh
Q 001641 729 LEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNM 807 (1039)
Q Consensus 729 l~~Elei~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~ 807 (1039)
+.+-+.-+ ..+.+++.++...+.....+..++..+.. ....-...+. .+|+.-..
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~----------------------~~~~~~~~A~-~Al~~G~E- 84 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEA----------------------QVADWQEKAE-LALSKGRE- 84 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHH-HHHHCCCH-
Q ss_pred cHHHHHHHHHhhHHHHHHHHhhhcccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 808 SSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSE 887 (1039)
Q Consensus 808 ~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~~~~ 887 (1039)
++ |+.+| ............++.++..++..+..|...+..++
T Consensus 85 -------------dL---------------------Ar~Al----~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~ 126 (219)
T TIGR02977 85 -------------DL---------------------ARAAL----IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQ 126 (219)
T ss_pred -------------HH---------------------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHhhccccccCCCCchhhhchhhhc
Q 001641 888 AQRKELVKQQR-----MREQAVTIALASSASGIQQGSSWRSSKHFADDM 931 (1039)
Q Consensus 888 ~~~~~l~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 931 (1039)
.++.++..... ..--.-....+....+ .+..+.-..+++|
T Consensus 127 ~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~----~~~~~a~~~fer~ 171 (219)
T TIGR02977 127 AKLAEARARQKALAIRHQAASSRLDVRRQLDS----GRSDEAMARFEQY 171 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCchhHHHHHHHH
No 446
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.71 E-value=13 Score=44.09 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=20.3
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
+...+-.+.-..++-||++|+|||++.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 444444566667888999999999887
No 447
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=43.66 E-value=9.8 Score=37.93 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=13.0
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998875
No 448
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=43.48 E-value=11 Score=40.58 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.1
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3345699999999998
No 449
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=43.46 E-value=7.7e+02 Score=32.13 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHH
Q 001641 579 KLKALEAQILELKKKQES--QVELLKQKHKSDEAAKRLQAEIQS 620 (1039)
Q Consensus 579 kL~eLE~el~~Lkkk~~~--~~~l~k~k~k~e~~~~~L~~ei~~ 620 (1039)
+...+..++..|++-..+ ..++.++|...|.+-+.|+..+..
T Consensus 1057 k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~k 1100 (1189)
T KOG1265|consen 1057 KEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDK 1100 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555433332 334455666666666665554443
No 450
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=43.40 E-value=17 Score=43.43 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=26.1
Q ss_pred cEEeeccCCCCcccccc---cCCC-----------CCCcccchhHHHHHHHHHHHh
Q 001641 83 TVLAYGQTGSGKTYTMG---TGLR-----------EGFQTGLIPQVMNALFNKIET 124 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm~---G~~~-----------~~~~~Giipr~~~~LF~~i~~ 124 (1039)
.|+-||++|+|||++.- +... .....|--++.+..+|.....
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 274 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHh
Confidence 47889999999999861 1000 011234456677888876543
No 451
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=43.38 E-value=10 Score=42.76 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=20.6
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
||+ ..+.--+..|-.||+|++|||.++
T Consensus 184 pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 184 PLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 444 444555677889999999999987
No 452
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=43.29 E-value=3.7e+02 Score=27.21 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 001641 607 SDEAAKRLQAEIQSIKAQKVQ 627 (1039)
Q Consensus 607 ~e~~~~~L~~ei~~lk~~kv~ 627 (1039)
....+...+..|.+|......
T Consensus 85 L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 85 LDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 333334444444444444444
No 453
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=43.14 E-value=13 Score=46.82 Aligned_cols=25 Identities=44% Similarity=0.636 Sum_probs=20.0
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.+..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4556677876 788899999999886
No 454
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.07 E-value=7.9e+02 Score=31.03 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=21.3
Q ss_pred HHhhHHHHHHHHHHH-HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHH
Q 001641 496 WQNTMDKELNELNKR-LEQKESEMKLFGDIDTEALRHHFGKKIMELEEE 543 (1039)
Q Consensus 496 ~q~~l~~El~eL~kq-Le~kE~~~k~~~~~d~~~~k~~ye~kl~eLEee 543 (1039)
+|+.-....++|+.. +.+.|...+++. .+....+..|+..|..||.+
T Consensus 802 LQkeE~R~qqqL~~k~~~q~Eq~~rrFe-qE~~~kkr~~d~EmenlErq 849 (1187)
T KOG0579|consen 802 LQKEEARQQQQLQAKGIKQVEQQARRFE-QEQTNKKRTSDLEMENLERQ 849 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHH
Confidence 444444444455433 333444445544 23333444455555555543
No 455
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=42.85 E-value=9.8 Score=45.98 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.7
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
..|.-.|+||+|||+|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 45667799999999998
No 456
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.84 E-value=2e+02 Score=25.30 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001641 381 MQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRA 436 (1039)
Q Consensus 381 i~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~en~~L~~eL~e~r~rl~ 436 (1039)
|.-|+-+|..|+++.... ..+++.+......|+.+|+.|..+-..+++++.
T Consensus 20 I~LLQmEieELKEknn~l-----~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 20 ITLLQMEIEELKEKNNSL-----SQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHhhHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544322 455666666677777788888777777777665
No 457
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=42.68 E-value=2e+02 Score=31.24 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=20.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001641 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (1039)
Q Consensus 600 l~k~k~k~e~~~~~L~~ei~~lk~~kv~L 628 (1039)
+...--..+..+..|..||.++++...++
T Consensus 187 ~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 187 LVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567778888888888888877773
No 458
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=42.61 E-value=14 Score=40.41 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=28.3
Q ss_pred CccEEeeccCCCCccccc------ccCCC--CCCcccchhHHHHHHHHHHHh
Q 001641 81 NATVLAYGQTGSGKTYTM------GTGLR--EGFQTGLIPQVMNALFNKIET 124 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm------~G~~~--~~~~~Giipr~~~~LF~~i~~ 124 (1039)
+-+-..+|++|||||.|+ .|-+- -...+++=..++..||..+..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 344457999999999998 23211 112456767788888877765
No 459
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=42.59 E-value=6e+02 Score=29.47 Aligned_cols=86 Identities=22% Similarity=0.253 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q 001641 500 MDKELNELNKRLEQKESEMKLFGD----IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG 575 (1039)
Q Consensus 500 l~~El~eL~kqLe~kE~~~k~~~~----~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~ 575 (1039)
+++++.++..+|+..|..+..+.. .+...--..+...+.+|+.++..++.+. ..+.....+..-.+..
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l-------~~l~~~~~~~~P~v~~- 246 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQL-------AQLRSITPEQNPQVPS- 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhCCCCCCchHH-
Confidence 456677777777777776665542 1221111113344555555555544444 3332222222222222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001641 576 HTLKLKALEAQILELKKK 593 (1039)
Q Consensus 576 ~ekkL~eLE~el~~Lkkk 593 (1039)
.+.++..|+.+|....++
T Consensus 247 l~~~i~~l~~~i~~e~~~ 264 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQ 264 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 235566666666555443
No 460
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=42.46 E-value=9 Score=48.67 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=26.0
Q ss_pred cccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 62 SAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 62 ~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..||...-.-.-.-.-.|.|-||+..|.+|||||+|+
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 3455543222222234689999999999999999997
No 461
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=42.41 E-value=8.4e+02 Score=31.15 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.6
Q ss_pred CCCccEEeeccCCCCccccc
Q 001641 79 GYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (1039)
-.+.+|+.-|.+|+|||-+-
T Consensus 142 k~SQSIIVSGESGAGKTEst 161 (1259)
T KOG0163|consen 142 KLSQSIIVSGESGAGKTEST 161 (1259)
T ss_pred hhcccEEEecCCCCCcchhH
Confidence 56778999999999999654
No 462
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=42.37 E-value=10 Score=40.88 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=11.9
Q ss_pred EeeccCCCCccccc
Q 001641 85 LAYGQTGSGKTYTM 98 (1039)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (1039)
.-.|++|||||+.+
T Consensus 32 ~iiGpSGSGKSTlL 45 (240)
T COG1126 32 VIIGPSGSGKSTLL 45 (240)
T ss_pred EEECCCCCCHHHHH
Confidence 44699999999877
No 463
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=42.27 E-value=16 Score=39.66 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=22.8
Q ss_pred chhhHHHhhc-CC--CccEEeeccCCCCccccc
Q 001641 69 VAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 69 v~plV~~vl~-G~--N~tI~aYGqTGSGKTyTm 98 (1039)
.-|-+|.++. |+ ..+++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 3456677776 43 778888999999998765
No 464
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=42.23 E-value=20 Score=39.60 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=26.0
Q ss_pred cEEeeccCCCCccccc-----ccCCC-CCCcccchhHHHHHHH
Q 001641 83 TVLAYGQTGSGKTYTM-----GTGLR-EGFQTGLIPQVMNALF 119 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm-----~G~~~-~~~~~Giipr~~~~LF 119 (1039)
.|+.-|.+|||||..+ .|-+. +.--+.++|.+++-+.
T Consensus 3 lvIVTGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~ 45 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLML 45 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHh
Confidence 3678899999999988 23333 3345678888777554
No 465
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=42.11 E-value=15 Score=42.72 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.4
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.+..+.+|-+..||..++||||||.+.
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 456677888888888999999999874
No 466
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=42.08 E-value=7.3 Score=43.83 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.7
Q ss_pred cCCCccEEeeccCCCCccccc
Q 001641 78 QGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488899999999999998765
No 467
>PRK06851 hypothetical protein; Provisional
Probab=42.04 E-value=18 Score=42.31 Aligned_cols=41 Identities=27% Similarity=0.504 Sum_probs=0.0
Q ss_pred eEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 52 HVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 52 ~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
++|....|. .....+.+.++.|.+-.++-.|.+|+|||++|
T Consensus 7 ~~f~ggnT~------~Gf~s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 7 HYFAGGNTA------RGFYSLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred eeecCCCCC------CchhhhhhhhccccceEEEEECCCCCCHHHHH
No 468
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=41.51 E-value=21 Score=44.93 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.7
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
+.-++++|+||||||..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSV 241 (641)
T ss_pred CceEEEEeCCCCCccceE
Confidence 456799999999999986
No 469
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=41.48 E-value=16 Score=39.27 Aligned_cols=28 Identities=43% Similarity=0.576 Sum_probs=21.6
Q ss_pred hhHHHhhc-C--CCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQ-G--YNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~-G--~N~tI~aYGqTGSGKTyTm 98 (1039)
|-+|.++. | .+++++.+|++|||||.-.
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 44677774 4 4888999999999998653
No 470
>PRK07261 topology modulation protein; Provisional
Probab=41.46 E-value=12 Score=38.82 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|+..|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999776
No 471
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=41.38 E-value=11 Score=44.98 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=16.5
Q ss_pred hcCCCccEEeeccCCCCcccccc
Q 001641 77 FQGYNATVLAYGQTGSGKTYTMG 99 (1039)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm~ 99 (1039)
.+|.+ ++|++|||||||+...
T Consensus 109 ~~Grd--l~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAFL 129 (482)
T ss_pred ecCCc--eEEEccCCCcchHHHH
Confidence 45555 4899999999999873
No 472
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=41.27 E-value=12 Score=38.71 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|+.+|+.|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 473
>PRK00131 aroK shikimate kinase; Reviewed
Probab=41.22 E-value=11 Score=38.10 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.8
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
.+|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36889999999999884
No 474
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=41.17 E-value=12 Score=42.92 Aligned_cols=17 Identities=47% Similarity=0.643 Sum_probs=15.1
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
..++-||++|+|||+..
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 46788999999999988
No 475
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=41.16 E-value=12 Score=42.56 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.1
Q ss_pred hcCCCccEEeeccCCCCccccc
Q 001641 77 FQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (1039)
..+-+.-++-||+.|||||.||
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHH
Confidence 3466778999999999999999
No 476
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.95 E-value=5.2e+02 Score=28.31 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHH
Q 001641 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQ--ESQVELLKQKHKSDEAAK 612 (1039)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eLE~el~~Lkkk~--~~~~~l~k~k~k~e~~~~ 612 (1039)
+....++..+.++++....... .+.|.+..|..+.++++.....++.+. ..+.++.|++.+.+....
T Consensus 100 k~~k~~e~~~~k~~K~~~~~~~-----------~~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~ 168 (233)
T cd07649 100 KDMKKLDHHIADLRKQLASRYA-----------AVEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGD 168 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 3455556666666555544333 334567789999999987666554432 336678888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWK 643 (1039)
Q Consensus 613 ~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~ 643 (1039)
.++.-+...+..+.+-+..|..-.++|...+
T Consensus 169 e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~E 199 (233)
T cd07649 169 DLMRCVDLYNQAQSKWFEEMVTTSLELERLE 199 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777776666665543
No 477
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=40.88 E-value=6e+02 Score=29.02 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhhhchhhhcCCCCCCC--ccCccc
Q 001641 867 TEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASGIQQGSSWRSSKHFADDMSGPLSPV--SLPAPK 944 (1039)
Q Consensus 867 ~ql~El~~k~~el~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 944 (1039)
..+.-++.+++-|+...+-+...+++|..-+...+.-|.. +...-++.+|.+.. -.+..+
T Consensus 292 k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~------------------k~~~~~la~pe~~~~~~~~~~~ 353 (391)
T KOG1850|consen 292 KEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSA------------------KNAMKDLATPESKPCIILDSEK 353 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccch------------------hhhhhhhcCccccccccccchh
Confidence 3445677788888888888888888877666555544332 44455666666543 335566
Q ss_pred ccccccCcccCCccchhhh
Q 001641 945 QLKFTPGIVNGSVRESAAF 963 (1039)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~ 963 (1039)
+++..|-++-+++-+..+-
T Consensus 354 ~~~ts~~~a~a~~~~gep~ 372 (391)
T KOG1850|consen 354 KLNTSSKRAAASHLEGEPK 372 (391)
T ss_pred ccCCchhcccccCCCCCcc
Confidence 7776666666665554443
No 478
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.61 E-value=11 Score=43.02 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=16.9
Q ss_pred CCCccEEeeccCCCCccccc
Q 001641 79 GYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (1039)
-...+|+-.|.||||||++|
T Consensus 141 e~~~siii~G~t~sGKTt~l 160 (312)
T COG0630 141 EARKSIIICGGTASGKTTLL 160 (312)
T ss_pred HcCCcEEEECCCCCCHHHHH
Confidence 34556888999999999999
No 479
>PHA02244 ATPase-like protein
Probab=40.53 E-value=14 Score=43.13 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=17.6
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 71 plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.+...+-.|. .|+-+|+||+|||+..
T Consensus 111 ri~r~l~~~~--PVLL~GppGtGKTtLA 136 (383)
T PHA02244 111 DIAKIVNANI--PVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHhcCC--CEEEECCCCCCHHHHH
Confidence 3333333455 4566999999999876
No 480
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=40.49 E-value=3.3e+02 Score=30.87 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 001641 893 LVKQQRMREQAVTIALASSA 912 (1039)
Q Consensus 893 l~~~~~~~~~~~~~~l~~~~ 912 (1039)
||-|......++|++=+++-
T Consensus 120 lQgEmQ~LrDKLAiaERtAk 139 (351)
T PF07058_consen 120 LQGEMQQLRDKLAIAERTAK 139 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 481
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=40.36 E-value=11 Score=44.37 Aligned_cols=18 Identities=50% Similarity=0.739 Sum_probs=13.4
Q ss_pred CccEEeeccCCCCccccc
Q 001641 81 NATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (1039)
+.-++..|.||||||.+|
T Consensus 15 ~~~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 15 NRHILIIGATGSGKTQAI 32 (386)
T ss_dssp GG-EEEEE-TTSSHHHHH
T ss_pred hCcEEEECCCCCCHHHHH
Confidence 345788999999999877
No 482
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=40.26 E-value=24 Score=43.97 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=15.0
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
..++.+|+||||||.++
T Consensus 159 ~hvLviapTgSGKg~g~ 175 (606)
T PRK13897 159 QHALLFAPTGSGKGVGF 175 (606)
T ss_pred ceEEEEcCCCCCcceEE
Confidence 45889999999999887
No 483
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=40.20 E-value=1.2e+03 Score=32.38 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=12.6
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
++-.|++|||||.+|
T Consensus 27 ~~~~G~NGsGKS~~l 41 (1353)
T TIGR02680 27 LLLRGNNGAGKSKVL 41 (1353)
T ss_pred EEEECCCCCcHHHHH
Confidence 345699999999998
No 484
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=40.10 E-value=5.6e+02 Score=33.48 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 839 RFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLK 884 (1039)
Q Consensus 839 ~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~l~ 884 (1039)
.++++|..+|..|.+++-+.+...-+ ..+-.+.++.+++|...++
T Consensus 554 G~~~~A~q~L~qlq~mmenmq~~~~q-~~~~~~~~q~m~~L~dl~r 598 (820)
T PF13779_consen 554 GRMDEARQLLEQLQQMMENMQNAQPQ-QQQQQEMQQAMEELGDLLR 598 (820)
T ss_pred CCHHHHHHHHHHHHHHHHhccccCCC-chhhHHHHHHHHHHHHHHH
Confidence 46788999999999999888866655 3444555555555554443
No 485
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=40.07 E-value=13 Score=37.00 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=14.1
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 5889999999999875
No 486
>PRK08118 topology modulation protein; Reviewed
Probab=40.04 E-value=13 Score=38.43 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=12.5
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|+..|+.|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999543
No 487
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=40.03 E-value=16 Score=45.48 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=20.0
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001641 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 72 lV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.|..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3456788988 667889999999876
No 488
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=40.03 E-value=58 Score=39.23 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=63.0
Q ss_pred cCCCccEEeeccCCCCcccccccCCCCCCcccchhHHHHHHHHHHHhccccceEEEEeehhhhhhhHHhh-hcCCccccc
Q 001641 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRD-LLDSVSVSK 156 (1039)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIYnE~v~D-LL~~~~~~~ 156 (1039)
...+++|+-+|.|||||- ++-|+++..=. +.+ .-.|.|.|-.|-.+-+-. |+.......
T Consensus 161 A~s~a~VLI~GESGtGKE--------------lvAr~IH~~S~-----R~~-~PFVavNcaAip~~l~ESELFGhekGAF 220 (464)
T COG2204 161 APSDASVLITGESGTGKE--------------LVARAIHQASP-----RAK-GPFIAVNCAAIPENLLESELFGHEKGAF 220 (464)
T ss_pred hCCCCCEEEECCCCCcHH--------------HHHHHHHhhCc-----ccC-CCceeeecccCCHHHHHHHhhcccccCc
Confidence 488999999999999992 44555554321 112 233666666666665555 332111100
Q ss_pred cccccCCCCccccCCCCCceeEeCCCCcEEecCCeEEEcCCHHHHHHHHHhcccCcc
Q 001641 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRA 213 (1039)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~ 213 (1039)
.|. ..+..-.+-....|..++..+.+.+..--.-++.+|..+.-.|.
T Consensus 221 -------TGA---~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rv 267 (464)
T COG2204 221 -------TGA---ITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERV 267 (464)
T ss_pred -------CCc---ccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEec
Confidence 010 00111223344455678888888888888889999998765554
No 489
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=39.95 E-value=12 Score=42.05 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=19.2
Q ss_pred cCCCccEEeeccCCCCccccc
Q 001641 78 QGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (1039)
.|++.+|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999877
No 490
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.93 E-value=1.1e+03 Score=31.59 Aligned_cols=31 Identities=6% Similarity=0.259 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001641 590 LKKKQESQVELLKQKHKSDEAAKRLQAEIQS 620 (1039)
Q Consensus 590 Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~ 620 (1039)
+....+++..+.+...+.+..+......+.+
T Consensus 257 i~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 257 IRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455556666666666666666665555
No 491
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.63 E-value=3.5e+02 Score=29.30 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001641 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEG 657 (1039)
Q Consensus 578 kkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~r~~~~~~~kEi~qLk~~~ 657 (1039)
.++--+=.++..++.-.+.+.+-...+.+.+..-+ |.+|...+++.... +++|+++-...=...++....|+++.
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~-~~~~~~~~~~~~~k----L~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSK-LEEENDKLKADLEK----LETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccc-hhhhHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 001641 658 RKNEFERHKLEALNQRQKMVLQRKT 682 (1039)
Q Consensus 658 rk~~~ei~~L~~~~~~q~~vL~rK~ 682 (1039)
.....|..+|..++++-++.+..+.
T Consensus 189 e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 189 EGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred HHcccHHHHHHHHHHHHHHHHhccC
No 492
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=39.63 E-value=13 Score=41.80 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=14.1
Q ss_pred cEEeeccCCCCccccc
Q 001641 83 TVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1039)
.++-||++|+|||+..
T Consensus 32 ~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLA 47 (305)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4777999999999887
No 493
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=39.61 E-value=11 Score=38.18 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=11.9
Q ss_pred EEeeccCCCCccccc
Q 001641 84 VLAYGQTGSGKTYTM 98 (1039)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1039)
|+..|++|||||+.-
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 456799999998663
No 494
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.27 E-value=9.7e+02 Score=30.95 Aligned_cols=25 Identities=12% Similarity=0.400 Sum_probs=17.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHhhHHH
Q 001641 798 IASLENMLNMSSKALVEMASQLSEA 822 (1039)
Q Consensus 798 i~~Le~~~~~~~~~i~~l~~ql~~~ 822 (1039)
.+.|.+.+..++.-|.++.+++.-+
T Consensus 857 ls~l~~~~k~~~nli~~ltEk~~sl 881 (970)
T KOG0946|consen 857 LSNLQEKIKFGNNLIKELTEKISSL 881 (970)
T ss_pred HHHHHHHhhhhhhHHHHHhhhhhhH
Confidence 3457777777777777777776665
No 495
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=39.26 E-value=11 Score=43.71 Aligned_cols=42 Identities=21% Similarity=0.410 Sum_probs=32.0
Q ss_pred EEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 48 F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
|.|..|.|. +. ...-++-.+++..-+-|+-.|.+|+|||..+
T Consensus 1 ~pf~~ivgq-----~~----~~~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAIVGQ-----DE----MKLALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCccccccH-----HH----HHHHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 567777753 22 3556777778877788999999999999987
No 496
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=39.16 E-value=3e+02 Score=31.40 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHH
Q 001641 504 LNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKAL 583 (1039)
Q Consensus 504 l~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ekkL~eL 583 (1039)
+++|...|.+.|+..++.+ --..+|..+...+.-+.|.|...|+.+ .+...-++.+|+.++.++
T Consensus 79 ~r~lk~~l~evEekyrkAM------------v~naQLDNek~~l~yqvd~Lkd~lee~----eE~~~~~~re~~eK~~el 142 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAM------------VSNAQLDNEKSALMYQVDLLKDKLEEL----EETLAQLQREYREKIREL 142 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHhhhchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001641 584 EAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQS 620 (1039)
Q Consensus 584 E~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~ 620 (1039)
| +....+..|......+..+++...+-|..
T Consensus 143 E-------r~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 143 E-------RQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=39.13 E-value=56 Score=26.27 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001641 839 RFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVAL 882 (1039)
Q Consensus 839 ~s~~EAk~~Lk~l~~~~~~~r~~~~~~e~ql~El~~k~~el~~~ 882 (1039)
.++.|||.+| ...--+.+...-..+.+|.||++|-..|..+
T Consensus 1 Sd~~EAkelL---qe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 1 SDRAEAKELL---QEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -----------------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH---HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
No 498
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.00 E-value=12 Score=44.05 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=0.0
Q ss_pred ccEEeeccCCCCccccc
Q 001641 82 ATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1039)
..|+-.|+||+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
No 499
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=39.00 E-value=17 Score=41.78 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=0.0
Q ss_pred EEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001641 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1039)
Q Consensus 48 F~FD~VF~~~~s~q~~vy~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 98 (1039)
|.-.+.|-|... ...+|+.-+...|-..| .++.-|+-+|++|+|||...
T Consensus 33 f~~~~~~~p~~d-~~y~f~~~~~~~vl~~l-~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 33 FSHRDEHVPDID-PAYLFDKATTKAICAGF-AYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred cCCCCCCCCCCC-CCccCCHHHHHHHHHHH-hcCCcEEEEeCCCChHHHHH
No 500
>PRK00106 hypothetical protein; Provisional
Probab=38.98 E-value=8.5e+02 Score=30.19 Aligned_cols=171 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HH
Q 001641 568 HTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQF---RQ-WK 643 (1039)
Q Consensus 568 ~~~KLke~~ekkL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~lk~~kv~L~k~mkee~~~~---r~-~~ 643 (1039)
+.+..++..+-.|-..+.+..++.+.-+..++-.+ +.......+++..++..--+.+.+.|.+.++. +. .=
T Consensus 25 ~~~~~~~~~~~~~~~A~~~A~~IleeAe~eAe~I~-----keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL 99 (535)
T PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIK-----KTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQEL 99 (535)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchH
Q 001641 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEK 723 (1039)
Q Consensus 644 ~~~~kEi~qLk~~~rk~~~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~Le~~k~~~~~~~~~~~~~~~~~~~~~~~ 723 (1039)
..+++.+.+-...+.++..++.+.+..-.++...|..+.+++....+.+.+..+.+...-.+.+....+
T Consensus 100 ~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~----------- 168 (535)
T PRK00106 100 KQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQA----------- 168 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----------
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001641 724 SLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADE 759 (1039)
Q Consensus 724 ~~~~Wl~~Elei~~~~~e~~~~~e~l~e~R~~l~~E 759 (1039)
...+.=+-..-.+++.....++..-..-+++
T Consensus 169 -----eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~ 199 (535)
T PRK00106 169 -----EAREIILAETENKLTHEIATRIREAEREVKD 199 (535)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!