BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001643
(1038 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4G|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
Length = 421
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 189 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 246
Query: 833 ICQI 836
C I
Sbjct: 247 NCDI 250
>pdb|1XOM|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XOM|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XON|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XON|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XOQ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOQ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOR|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1XOR|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1Y2B|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2B|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2C|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2C|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2E|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2E|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2K|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2K|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|3IAK|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d (Pde4d)
With Papaverine.
pdb|3K4S|A Chain A, The Structure Of The Catalytic Domain Of Human Pde4d With
4- (3-Butoxy-4-Methoxyphenyl)methyl-2-Imidazolidone
Length = 349
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 123 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 180
Query: 833 ICQI 836
C I
Sbjct: 181 NCDI 184
>pdb|2QYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
pdb|2QYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
Length = 328
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 102 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 159
Query: 833 ICQI 836
C I
Sbjct: 160 NCDI 163
>pdb|1TB7|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TB7|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TBB|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
pdb|1TBB|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
Length = 332
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 106 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 163
Query: 833 ICQI 836
C I
Sbjct: 164 NCDI 167
>pdb|1ZKN|A Chain A, Structure Of Pde4d2-Ibmx
pdb|1ZKN|B Chain B, Structure Of Pde4d2-Ibmx
pdb|1ZKN|C Chain C, Structure Of Pde4d2-Ibmx
pdb|1ZKN|D Chain D, Structure Of Pde4d2-Ibmx
Length = 334
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 109 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 166
Query: 833 ICQI 836
C I
Sbjct: 167 NCDI 170
>pdb|1T90|A Chain A, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|B Chain B, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|C Chain C, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|D Chain D, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
Length = 486
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 754 VREVRDEICGMAPQSWKEEITEAIDP---EILSQVLSSGSLDIDYLGRILEFALTTLQKL 810
+R++++ I G +S ++ + ++P E+L QV S DIDY + A T K+
Sbjct: 3 IRKLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKV 62
Query: 811 SAPANDDDMKANHQRLL----KELAEICQIRDESN 841
+ P + N Q+LL +ELA + I + N
Sbjct: 63 AVPRRARIL-FNFQQLLSQHKEELAHLITIENGKN 96
>pdb|3SL5|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
Length = 359
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 109 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 166
Query: 833 ICQI 836
C I
Sbjct: 167 NCDI 170
>pdb|1MKD|A Chain A, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|B Chain B, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|C Chain C, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|D Chain D, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|E Chain E, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|F Chain F, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|G Chain G, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|H Chain H, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|I Chain I, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|J Chain J, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|K Chain K, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|L Chain L, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
Length = 328
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 102 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 159
Query: 833 ICQI 836
C I
Sbjct: 160 NCDI 163
>pdb|1Q9M|A Chain A, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|B Chain B, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|C Chain C, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|D Chain D, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1OYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|C Chain C, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|D Chain D, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1PTW|A Chain A, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|B Chain B, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|C Chain C, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|D Chain D, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|3V9B|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
Length = 360
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 109 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 166
Query: 833 ICQI 836
C I
Sbjct: 167 NCDI 170
>pdb|3IAD|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
Length = 377
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 111 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 168
Query: 833 ICQI 836
C I
Sbjct: 169 NCDI 172
>pdb|2FM0|A Chain A, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|B Chain B, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|C Chain C, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|D Chain D, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM5|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|C Chain C, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|D Chain D, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|3SL3|A Chain A, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|B Chain B, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|C Chain C, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|D Chain D, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL6|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
Length = 361
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 109 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 166
Query: 833 ICQI 836
C I
Sbjct: 167 NCDI 170
>pdb|3G4I|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4K|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4L|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G58|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
Length = 381
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 778 DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQ-----RLLKELAE 832
D EIL+ + +S D+D+ G +F + T +L+ ND + NH +LL+E E
Sbjct: 111 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQE--E 168
Query: 833 ICQI 836
C I
Sbjct: 169 NCDI 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,306,954
Number of Sequences: 62578
Number of extensions: 867719
Number of successful extensions: 2975
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2914
Number of HSP's gapped (non-prelim): 73
length of query: 1038
length of database: 14,973,337
effective HSP length: 109
effective length of query: 929
effective length of database: 8,152,335
effective search space: 7573519215
effective search space used: 7573519215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)