Query 001643
Match_columns 1038
No_of_seqs 174 out of 318
Neff 4.7
Searched_HMMs 13730
Date Tue Mar 26 17:33:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001643.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_938-942//hhsearch_scop/001643hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sa0e_ a.137.10.1 (E:) Stathm 26.8 10 0.00073 12.1 3.4 27 51-77 36-62 (138)
2 d3d19a1 a.29.13.1 (A:11-144) U 5.8 58 0.0043 6.5 7.2 29 448-476 35-63 (134)
3 d1okkd1 a.24.13.1 (D:21-78) Si 4.8 75 0.0055 5.7 2.8 50 729-778 8-57 (58)
4 d3dbya2 a.29.13.1 (A:126-260) 4.7 77 0.0056 5.6 5.4 35 440-474 18-52 (135)
5 d3d19a2 a.29.13.1 (A:145-274) 4.6 78 0.0057 5.6 4.9 28 447-474 28-55 (130)
6 d2o6ka1 a.60.15.1 (A:4-73) Unc 4.5 80 0.0058 5.5 1.1 17 494-510 50-66 (70)
7 d3dbya1 a.29.13.1 (A:5-125) Un 3.9 96 0.007 4.9 3.1 28 446-473 26-53 (121)
8 d2fj6a1 a.60.15.1 (A:1-74) Hyp 3.4 1.1E+02 0.0083 4.4 1.9 19 492-510 51-69 (74)
9 d1pjqa3 e.37.1.1 (A:114-215) S 3.0 1.3E+02 0.0098 3.9 6.0 55 736-790 26-83 (102)
10 d1w7ja2 c.37.1.9 (A:63-792) My 2.9 1.4E+02 0.01 3.8 4.6 31 262-312 694-724 (730)
No 1
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.84 E-value=10 Score=12.05 Aligned_cols=27 Identities=33% Similarity=0.290 Sum_probs=18.4
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 203999988889986224445568889
Q 001643 51 ECSRSPCTVEEIEAKLRHADLRRQQFY 77 (1038)
Q Consensus 51 ~~~~~~~~~~~ie~kl~~a~~rrq~~~ 77 (1038)
...+...|.++|+.|+..|.-||++-.
T Consensus 36 ~p~rk~~s~ee~q~K~~~aeeRr~~~e 62 (138)
T d1sa0e_ 36 LPRRRDPSLEEIQKKLEAAEERRKYQE 62 (138)
T ss_dssp ------CCCSSTTTTGGGTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998742168889999999999999999
No 2
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=5.79 E-value=58 Score=6.49 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99348999999999999999999998419
Q 001643 448 QGEREIALAKSAEEFIGQFELLIKVILEG 476 (1038)
Q Consensus 448 ~ge~E~~L~~sA~~lv~~FE~li~~i~~g 476 (1038)
-...|..|++.|..|...||.++......
T Consensus 35 l~p~E~~li~~A~~F~~~Fd~Ll~~a~~~ 63 (134)
T d3d19a1 35 FRCEDTQLIEEANQFYRLFEHIEQIAHSY 63 (134)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89312999999999999999999999987
No 3
>d1okkd1 a.24.13.1 (D:21-78) Signal recognition particle receptor, FtsY {Thermus aquaticus [TaxId: 271]}
Probab=4.76 E-value=75 Score=5.71 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf 99999999999824998465899999999999851299013999984089
Q 001643 729 EKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEEITEAID 778 (1038)
Q Consensus 729 ~kAFWD~lreeL~~dpPdysrli~Ll~EIRD~LlsLLP~slr~eI~E~LD 778 (1038)
-+.||+.+.+.|....--+.-...++..+|+....=+..-+++.|.+.|.
T Consensus 8 ~d~~leeLEe~Li~ADvGv~tt~~ii~~Lr~~~~~~l~~~Lke~l~~~L~ 57 (58)
T d1okkd1 8 LEEVLEELEMALLAADVGLSATEEILQEVRASGRKDLKEAVKEKLVGMLE 57 (58)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 59999999999998136789999999999999999999999999998729
No 4
>d3dbya2 a.29.13.1 (A:126-260) Uncharacterized protein BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Probab=4.67 E-value=77 Score=5.64 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=24.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96552568993489999999999999999999984
Q 001643 440 HPDAVFSGQGEREIALAKSAEEFIGQFELLIKVIL 474 (1038)
Q Consensus 440 HP~~Vls~~ge~E~~L~~sA~~lv~~FE~li~~i~ 474 (1038)
|---.-++=...|+.|++.|.+|...||.++....
T Consensus 18 HA~FI~~~Ldp~E~~li~~A~~F~~~Fe~Ll~~a~ 52 (135)
T d3dbya2 18 HAGSISGGLDLVEKRLKEKSEEFTKHFEQFYLKAV 52 (135)
T ss_dssp HHHHHHHHBCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999876992379999999999999999999999
No 5
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=4.61 E-value=78 Score=5.58 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8993489999999999999999999984
Q 001643 447 GQGEREIALAKSAEEFIGQFELLIKVIL 474 (1038)
Q Consensus 447 ~~ge~E~~L~~sA~~lv~~FE~li~~i~ 474 (1038)
+=...|..|+..|.+|...||.++....
T Consensus 28 ~L~p~E~~li~~A~~f~~~Fe~Ll~~a~ 55 (130)
T d3d19a2 28 LLDPSERKLVDTARNFSNDFDELMYQAI 55 (130)
T ss_dssp HBCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1895029999999999999999999999
No 6
>d2o6ka1 a.60.15.1 (A:4-73) Uncharacterized protein MW1311 {Staphylococcus aureus [TaxId: 1280]}
Probab=4.52 E-value=80 Score=5.51 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 25789999999999997
Q 001643 494 IRSQLAAFDKAWCSYLN 510 (1038)
Q Consensus 494 f~sql~~f~~Aw~~yl~ 510 (1038)
+...+..||+||.-|+-
T Consensus 50 ~~~sm~~FD~aW~~Yle 66 (70)
T d2o6ka1 50 FTLPMSVFDDLYEEYTE 66 (70)
T ss_dssp CSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 02148999999999999
No 7
>d3dbya1 a.29.13.1 (A:5-125) Uncharacterized protein BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Probab=3.91 E-value=96 Score=4.94 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6899348999999999999999999998
Q 001643 446 SGQGEREIALAKSAEEFIGQFELLIKVI 473 (1038)
Q Consensus 446 s~~ge~E~~L~~sA~~lv~~FE~li~~i 473 (1038)
++=...|+.|+..|..|...||.++...
T Consensus 26 ~~L~p~e~~li~~A~~F~~~Fd~Ll~~a 53 (121)
T d3dbya1 26 DALAPKEKEDIKKATYFVETFTNLLNKV 53 (121)
T ss_dssp HHBCTTCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7699211899999999999999999998
No 8
>d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus subtilis [TaxId: 1423]}
Probab=3.38 E-value=1.1e+02 Score=4.38 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 1125789999999999997
Q 001643 492 WTIRSQLAAFDKAWCSYLN 510 (1038)
Q Consensus 492 ~~f~sql~~f~~Aw~~yl~ 510 (1038)
..+...+..||+||.-|.-
T Consensus 51 ~~~l~sm~~FD~aW~~Y~~ 69 (74)
T d2fj6a1 51 ADYLHTMATFDEAWDQYES 69 (74)
T ss_dssp HHHHTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 5502158999999999999
No 9
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=2.96 E-value=1.3e+02 Score=3.87 Aligned_cols=55 Identities=9% Similarity=0.119 Sum_probs=36.8
Q ss_pred HHHHHHC-CCCCHHHHHHHHHHHHHHHHCCCCC-CH-HHHHHHHCCHHHHHHHHHCCC
Q ss_conf 9999824-9984658999999999998512990-13-999984089557996652298
Q 001643 736 IAESVKQ-GEHNYDRIIQLVREVRDEICGMAPQ-SW-KEEITEAIDPEILSQVLSSGS 790 (1038)
Q Consensus 736 lreeL~~-dpPdysrli~Ll~EIRD~LlsLLP~-sl-r~eI~E~LD~elL~QQlesGs 790 (1038)
+++.|.. -|+.|..+..++..+|+.+...+|. .. +......+|-+.+...+..|.
T Consensus 26 lR~~lE~~lp~~~~~l~~~~~~~R~~vk~~~~~~~~Rr~fw~~~~~~~~~~~~l~~~~ 83 (102)
T d1pjqa3 26 LREKLESLLPQHLGQVARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLANAD 83 (102)
T ss_dssp HHHHHHHHSCTTHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCC
T ss_conf 9999998678569999999999999999877992799999999974827899882895
No 10
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=2.91 E-value=1.4e+02 Score=3.80 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999799999872024533455444552377999999999999885212
Q 001643 262 LQRAKRQRAEYLRQRARLHTVRINWNRMDKQADVLSRKLARCWRQFLKHRR 312 (1038)
Q Consensus 262 l~~A~r~R~E~l~qr~~~r~~~~~~~~~~~~~d~aarklqr~WR~f~~~~~ 312 (1038)
++.-+++|.+.+ ..++.+||++||.|+.+++
T Consensus 694 ~~~LE~~r~~~l--------------------~~~~~~iQ~~~R~~l~Rk~ 724 (730)
T d1w7ja2 694 VAYLEKIRADKL--------------------RAACIRIQKTIRGWLMRKK 724 (730)
T ss_dssp HHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999--------------------9999999999999999999
Done!