BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001645
(1038 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 932 TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALE-L 990
T+ Y A++ G+A G E V + +K G PD +Y+ + C+ + + +E
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 991 LSEMTESGI 999
L +M++ G+
Sbjct: 224 LEQMSQEGL 232
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 914 VGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSM 973
+ R +IF++M + P T+T + A+D+ +MK G P R+Y
Sbjct: 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145
Query: 974 FIGCLCKVGKSEEALELLSEM 994
+ C+ G +++A E+ + M
Sbjct: 146 ALFGFCRKGDADKAYEVDAHM 166
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%)
Query: 457 KGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFI 516
+G +++ +M+ + P+ T V +D+ A+ + K M+ GI+P +SY +
Sbjct: 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPAL 147
Query: 517 KELCRVSRTNEILKVLNNM 535
CR ++ +V +M
Sbjct: 148 FGFCRKGDADKAYEVDAHM 166
>pdb|1PKM|A Chain A, The Refined Three-Dimensional Structure Of Cat Muscle (M1)
Pyruvate Kinase, At A Resolution Of 2.6 Angstroms
Length = 530
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 976 GCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
G +C +G + ++E+L EM +SG+ + +NF
Sbjct: 45 GIICTIGPASRSVEILKEMIKSGMNVARLNF 75
>pdb|4B2D|D Chain D, Human Pkm2 With L-serine And Fbp Bound
Length = 548
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 928 GCEPTVVTYTALIQGFANLGKVAEAW-DVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEE 986
G +P TA IQ +A+ + + R+ I P R G +C +G +
Sbjct: 18 GSKPHSEAGTAFIQTQQLHAAMADTFLEHMCRLDIDSPPITARN----TGIICTIGPASR 73
Query: 987 ALELLSEMTESGIVPSNINF 1006
++E L EM +SG+ + +NF
Sbjct: 74 SVETLKEMIKSGMNVARLNF 93
>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
Length = 523
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 536 QASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNV 595
+ +K+VI + + + E G K + + +HP++G N S G PNV
Sbjct: 386 KGAKVVIANRTYERALELAEAIGG-----KALSLTDLDNYHPEDGMVLANTTSMGMQPNV 440
Query: 596 E 596
E
Sbjct: 441 E 441
>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2)
pdb|4B2D|A Chain A, Human Pkm2 With L-serine And Fbp Bound.
pdb|4B2D|B Chain B, Human Pkm2 With L-serine And Fbp Bound.
pdb|4B2D|C Chain C, Human Pkm2 With L-serine And Fbp Bound
Length = 548
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 928 GCEPTVVTYTALIQGFANLGKVAEAW-DVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEE 986
G +P TA IQ +A+ + + R+ I P R G +C +G +
Sbjct: 18 GSKPHSEAGTAFIQTQQLHAAMADTFLEHMCRLDIDSPPITARN----TGIICTIGPASR 73
Query: 987 ALELLSEMTESGIVPSNINF 1006
++E L EM +SG+ + +NF
Sbjct: 74 SVETLKEMIKSGMNVARLNF 93
>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
Dehydratase- Shikimate Dehydrogenase In Complex With
Tartrate And Shikimate
Length = 523
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 536 QASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNV 595
+ +K+VI + + + E G K + + +HP++G N S G PNV
Sbjct: 386 KGAKVVIANRTYERALELAEAIGG-----KALSLTDLDNYHPEDGMVLANTTSMGMQPNV 440
Query: 596 E 596
E
Sbjct: 441 E 441
>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase
pdb|3SRF|A Chain A, Human M1 Pyruvate Kinase
pdb|3SRF|B Chain B, Human M1 Pyruvate Kinase
pdb|3SRF|D Chain D, Human M1 Pyruvate Kinase
pdb|3SRF|E Chain E, Human M1 Pyruvate Kinase
pdb|3SRF|F Chain F, Human M1 Pyruvate Kinase
pdb|3SRF|G Chain G, Human M1 Pyruvate Kinase
pdb|3SRF|H Chain H, Human M1 Pyruvate Kinase
Length = 551
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 976 GCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
G +C +G + ++E L EM +SG+ + +NF
Sbjct: 66 GIICTIGPASRSVETLKEMIKSGMNVARLNF 96
>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
Length = 533
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 976 GCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
G +C +G + ++E L EM +SG+ + +NF
Sbjct: 48 GIICTIGPASRSVETLKEMIKSGMNVARLNF 78
>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|B Chain B, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|C Chain C, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|D Chain D, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRH|A Chain A, Human M2 Pyruvate Kinase
pdb|3SRH|B Chain B, Human M2 Pyruvate Kinase
pdb|3SRH|C Chain C, Human M2 Pyruvate Kinase
pdb|3SRH|D Chain D, Human M2 Pyruvate Kinase
Length = 551
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 976 GCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
G +C +G + ++E L EM +SG+ + +NF
Sbjct: 66 GIICTIGPASRSVETLKEMIKSGMNVARLNF 96
>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|B Chain B, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|C Chain C, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|D Chain D, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
Length = 533
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 976 GCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
G +C +G + ++E L EM +SG+ + +NF
Sbjct: 48 GIICTIGPASRSVETLKEMIKSGMNVARLNF 78
>pdb|4G1N|A Chain A, Pkm2 In Complex With An Activator
pdb|4G1N|B Chain B, Pkm2 In Complex With An Activator
pdb|4G1N|C Chain C, Pkm2 In Complex With An Activator
pdb|4G1N|D Chain D, Pkm2 In Complex With An Activator
Length = 518
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 976 GCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
G +C +G + ++E L EM +SG+ + +NF
Sbjct: 33 GIICTIGPASRSVETLKEMIKSGMNVARLNF 63
>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2
pdb|1T5A|B Chain B, Human Pyruvate Kinase M2
pdb|1T5A|C Chain C, Human Pyruvate Kinase M2
pdb|1T5A|D Chain D, Human Pyruvate Kinase M2
Length = 567
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 976 GCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
G +C +G + ++E L EM +SG+ + +NF
Sbjct: 82 GIICTIGPASRSVETLKEMIKSGMNVARLNF 112
>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
Length = 550
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 976 GCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
G +C +G + ++E L EM +SG+ + +NF
Sbjct: 65 GIICTIGPASRSVETLKEMIKSGMNVARLNF 95
>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
Length = 530
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 976 GCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
G +C +G + ++E L EM +SG+ + +NF
Sbjct: 45 GIICTIGPASRSVETLKEMIKSGMNVARLNF 75
>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJF|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJF|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJF|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
Length = 518
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 976 GCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
G +C +G + ++E L EM +SG+ + +NF
Sbjct: 33 GIICTIGPASRSVETLKEMIKSGMNVARLNF 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,732,460
Number of Sequences: 62578
Number of extensions: 1085566
Number of successful extensions: 2646
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2624
Number of HSP's gapped (non-prelim): 28
length of query: 1038
length of database: 14,973,337
effective HSP length: 109
effective length of query: 929
effective length of database: 8,152,335
effective search space: 7573519215
effective search space used: 7573519215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)