Query 001645
Match_columns 1038
No_of_seqs 639 out of 4153
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.4E-82 7.4E-87 784.7 73.6 678 192-1003 48-726 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.1E-74 2.4E-79 717.6 75.3 661 227-1024 48-712 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.3E-65 7.3E-70 616.4 70.9 546 227-934 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 6E-65 1.3E-69 614.2 69.9 524 331-1004 366-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 6.4E-59 1.4E-63 562.8 53.6 471 302-1001 89-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.8E-58 1.5E-62 553.9 52.1 474 193-860 85-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-35 2.7E-40 378.5 99.8 782 173-1024 104-892 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-35 1.1E-39 372.8 97.5 753 173-995 139-898 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-23 2.7E-28 267.5 80.1 648 173-1001 42-745 (1157)
10 PRK11447 cellulose synthase su 100.0 3.5E-23 7.7E-28 263.4 78.2 646 198-1023 31-731 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.6E-20 3.4E-25 227.3 74.9 632 207-995 56-738 (987)
12 PRK09782 bacteriophage N4 rece 99.9 6.1E-19 1.3E-23 213.6 71.9 307 685-1003 374-710 (987)
13 KOG2002 TPR-containing nuclear 99.9 1.3E-17 2.8E-22 187.5 63.5 661 195-1010 41-758 (1018)
14 KOG2002 TPR-containing nuclear 99.9 6.6E-17 1.4E-21 181.9 60.0 601 246-1000 146-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.8 1E-17 2.2E-22 178.2 36.1 303 703-1019 200-506 (966)
16 PRK11788 tetratricopeptide rep 99.8 6.1E-18 1.3E-22 192.3 35.8 298 242-545 47-354 (389)
17 PRK11788 tetratricopeptide rep 99.8 1.4E-17 3E-22 189.4 37.0 300 696-1004 44-354 (389)
18 KOG4626 O-linked N-acetylgluco 99.8 3.7E-16 8E-21 166.5 38.9 274 724-1008 254-537 (966)
19 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-14 2.6E-19 174.1 52.9 256 735-997 307-571 (615)
20 KOG2076 RNA polymerase III tra 99.8 1.4E-12 3E-17 146.8 64.0 331 200-536 144-510 (895)
21 KOG4422 Uncharacterized conser 99.8 4.7E-14 1E-18 144.4 44.6 375 143-538 132-551 (625)
22 TIGR00990 3a0801s09 mitochondr 99.8 6.7E-14 1.4E-18 167.7 53.2 329 200-537 132-495 (615)
23 PRK15174 Vi polysaccharide exp 99.8 8.4E-15 1.8E-19 174.5 45.0 332 199-539 46-382 (656)
24 PRK15174 Vi polysaccharide exp 99.8 1.6E-14 3.6E-19 172.0 46.6 187 773-963 191-382 (656)
25 KOG4318 Bicoid mRNA stability 99.8 3.3E-14 7.2E-19 158.2 44.3 664 217-1021 12-757 (1088)
26 KOG4318 Bicoid mRNA stability 99.8 4E-14 8.7E-19 157.5 44.2 85 187-283 17-101 (1088)
27 PRK10049 pgaA outer membrane p 99.8 1.1E-13 2.4E-18 168.7 52.2 309 694-1010 123-467 (765)
28 PRK10049 pgaA outer membrane p 99.7 1.4E-13 3E-18 167.9 51.4 335 192-536 12-386 (765)
29 KOG0495 HAT repeat protein [RN 99.7 7.1E-11 1.5E-15 127.7 64.4 611 209-1002 265-883 (913)
30 KOG4422 Uncharacterized conser 99.7 1.9E-13 4.1E-18 140.1 42.8 348 300-768 116-479 (625)
31 PRK14574 hmsH outer membrane p 99.7 1.2E-12 2.7E-17 155.9 54.8 453 380-1008 44-522 (822)
32 PRK14574 hmsH outer membrane p 99.7 1.1E-11 2.5E-16 147.8 57.6 186 344-534 43-228 (822)
33 KOG2076 RNA polymerase III tra 99.7 2.6E-10 5.6E-15 128.9 62.5 359 173-537 153-554 (895)
34 KOG0495 HAT repeat protein [RN 99.6 4.6E-09 9.9E-14 114.1 63.4 497 390-1021 366-869 (913)
35 KOG2003 TPR repeat-containing 99.6 6.7E-12 1.5E-16 129.3 32.9 492 367-983 198-709 (840)
36 KOG2003 TPR repeat-containing 99.6 6.6E-12 1.4E-16 129.4 30.6 494 407-1018 204-709 (840)
37 KOG2047 mRNA splicing factor [ 99.5 3.7E-07 8E-12 99.6 58.8 571 190-913 76-709 (835)
38 PF13429 TPR_15: Tetratricopep 99.5 4.2E-13 9.1E-18 144.1 13.9 262 728-996 14-276 (280)
39 PRK10747 putative protoheme IX 99.5 1E-10 2.2E-15 131.6 32.9 251 733-994 129-387 (398)
40 KOG0547 Translocase of outer m 99.4 1.8E-09 3.9E-14 113.6 37.2 218 771-996 338-565 (606)
41 PRK10747 putative protoheme IX 99.4 5.1E-10 1.1E-14 125.9 36.1 289 208-536 97-388 (398)
42 COG2956 Predicted N-acetylgluc 99.4 7.3E-10 1.6E-14 110.6 30.5 289 244-538 49-347 (389)
43 TIGR00540 hemY_coli hemY prote 99.4 3E-10 6.6E-15 128.5 31.9 291 697-995 94-397 (409)
44 TIGR00540 hemY_coli hemY prote 99.4 1.2E-09 2.5E-14 123.7 35.9 288 207-499 96-395 (409)
45 KOG1915 Cell cycle control pro 99.4 2.8E-07 6.2E-12 96.8 49.4 457 383-995 86-583 (677)
46 KOG1915 Cell cycle control pro 99.4 1.2E-07 2.6E-12 99.5 45.9 446 348-906 86-548 (677)
47 COG2956 Predicted N-acetylgluc 99.4 1.8E-09 3.8E-14 108.0 31.2 285 208-502 48-346 (389)
48 PF13429 TPR_15: Tetratricopep 99.4 2.5E-12 5.5E-17 138.1 12.5 258 202-500 15-274 (280)
49 KOG2047 mRNA splicing factor [ 99.4 2.3E-06 5.1E-11 93.5 59.1 298 687-995 387-717 (835)
50 KOG0985 Vesicle coat protein c 99.3 5E-06 1.1E-10 95.0 60.0 292 650-990 949-1242(1666)
51 KOG1126 DNA-binding cell divis 99.3 6.3E-10 1.4E-14 122.1 27.1 283 702-997 334-620 (638)
52 COG3071 HemY Uncharacterized e 99.3 3.8E-09 8.3E-14 109.2 30.5 277 735-1022 97-380 (400)
53 KOG0985 Vesicle coat protein c 99.3 7.3E-06 1.6E-10 93.7 59.4 781 155-1023 324-1186(1666)
54 KOG1155 Anaphase-promoting com 99.3 2.1E-07 4.6E-12 97.8 43.1 234 683-926 258-494 (559)
55 KOG3616 Selective LIM binding 99.3 1.2E-06 2.5E-11 96.5 50.1 171 341-535 738-908 (1636)
56 COG3071 HemY Uncharacterized e 99.3 3.5E-08 7.5E-13 102.3 35.4 319 167-501 61-388 (400)
57 KOG1156 N-terminal acetyltrans 99.3 1.1E-06 2.4E-11 96.4 46.8 461 338-961 11-510 (700)
58 KOG1173 Anaphase-promoting com 99.2 3E-07 6.5E-12 99.3 41.1 281 721-1013 243-532 (611)
59 KOG3617 WD40 and TPR repeat-co 99.2 1.5E-06 3.2E-11 97.1 47.2 590 229-997 725-1359(1416)
60 KOG4162 Predicted calmodulin-b 99.2 1.4E-05 3.1E-10 89.9 55.6 127 866-996 653-782 (799)
61 KOG1126 DNA-binding cell divis 99.2 2.2E-09 4.7E-14 118.0 25.3 198 336-538 422-620 (638)
62 KOG1155 Anaphase-promoting com 99.2 3.2E-07 7E-12 96.4 39.5 292 237-536 234-534 (559)
63 KOG1173 Anaphase-promoting com 99.2 4E-07 8.6E-12 98.4 40.7 214 688-943 313-532 (611)
64 TIGR02521 type_IV_pilW type IV 99.2 5.8E-09 1.3E-13 109.0 27.1 200 794-996 31-231 (234)
65 KOG0547 Translocase of outer m 99.2 1.2E-07 2.5E-12 100.3 34.2 85 231-319 116-202 (606)
66 KOG4162 Predicted calmodulin-b 99.2 5E-06 1.1E-10 93.4 48.1 333 684-1021 320-772 (799)
67 PRK12370 invasion protein regu 99.2 1.1E-08 2.3E-13 120.5 29.5 148 775-925 320-468 (553)
68 KOG1156 N-terminal acetyltrans 99.2 2.7E-05 5.8E-10 86.0 56.5 623 207-996 19-687 (700)
69 PF13041 PPR_2: PPR repeat fam 99.1 1.2E-10 2.7E-15 87.0 6.4 49 861-909 1-49 (50)
70 PF13041 PPR_2: PPR repeat fam 99.1 1.4E-10 2.9E-15 86.7 6.4 50 896-945 1-50 (50)
71 PRK12370 invasion protein regu 99.1 6.2E-08 1.3E-12 114.1 31.8 266 227-504 253-536 (553)
72 KOG3785 Uncharacterized conser 99.1 8.5E-06 1.8E-10 82.8 41.0 274 205-500 32-311 (557)
73 KOG3785 Uncharacterized conser 99.1 4.6E-06 9.9E-11 84.6 38.8 203 726-936 289-497 (557)
74 KOG2376 Signal recognition par 99.1 1.8E-05 3.8E-10 86.4 45.2 148 843-994 356-517 (652)
75 KOG1127 TPR repeat-containing 99.1 3.8E-05 8.2E-10 88.5 49.5 247 685-940 848-1116(1238)
76 TIGR02521 type_IV_pilW type IV 99.0 9.3E-08 2E-12 99.8 26.8 198 195-396 31-229 (234)
77 KOG1129 TPR repeat-containing 99.0 2.9E-08 6.3E-13 99.2 20.0 227 306-537 229-457 (478)
78 KOG1840 Kinesin light chain [C 99.0 9.5E-07 2.1E-11 98.9 30.9 243 722-995 199-477 (508)
79 KOG3617 WD40 and TPR repeat-co 98.9 9.5E-05 2.1E-09 83.2 44.6 222 175-431 744-994 (1416)
80 PRK11189 lipoprotein NlpI; Pro 98.9 3.7E-07 8E-12 98.2 26.0 231 774-1015 41-282 (296)
81 KOG1129 TPR repeat-containing 98.9 9.6E-08 2.1E-12 95.5 19.4 223 773-1002 237-461 (478)
82 COG3063 PilF Tfp pilus assembl 98.9 6.7E-07 1.5E-11 86.1 24.0 208 797-1009 38-246 (250)
83 PF12569 NARP1: NMDA receptor- 98.9 1.4E-06 3E-11 98.9 31.1 317 695-1021 12-370 (517)
84 KOG1174 Anaphase-promoting com 98.9 7.3E-05 1.6E-09 77.9 38.9 273 719-1003 229-504 (564)
85 PF12569 NARP1: NMDA receptor- 98.9 3.9E-06 8.4E-11 95.3 32.8 295 200-538 9-334 (517)
86 KOG3616 Selective LIM binding 98.9 0.00036 7.7E-09 77.6 51.4 190 205-427 716-905 (1636)
87 KOG2376 Signal recognition par 98.9 7.1E-05 1.5E-09 81.8 40.0 52 236-288 18-69 (652)
88 KOG1840 Kinesin light chain [C 98.8 7.4E-07 1.6E-11 99.7 24.2 232 795-1026 200-473 (508)
89 KOG1174 Anaphase-promoting com 98.8 0.00011 2.4E-09 76.6 37.1 289 667-965 212-503 (564)
90 COG3063 PilF Tfp pilus assembl 98.8 3.1E-06 6.7E-11 81.6 23.8 198 338-538 38-236 (250)
91 cd05804 StaR_like StaR_like; a 98.8 2.3E-05 5E-10 87.8 35.2 306 687-997 6-336 (355)
92 PRK11189 lipoprotein NlpI; Pro 98.8 4E-06 8.8E-11 90.2 27.2 229 736-973 40-275 (296)
93 KOG1127 TPR repeat-containing 98.7 0.00059 1.3E-08 79.1 42.3 183 350-537 473-658 (1238)
94 KOG4340 Uncharacterized conser 98.7 3.1E-05 6.8E-10 77.0 27.5 196 337-541 12-210 (459)
95 cd05804 StaR_like StaR_like; a 98.6 0.0001 2.2E-09 82.5 34.7 198 340-538 119-336 (355)
96 KOG4340 Uncharacterized conser 98.6 0.00023 5.1E-09 70.9 30.6 289 198-499 13-335 (459)
97 KOG0548 Molecular co-chaperone 98.6 0.00047 1E-08 75.1 35.3 90 801-892 365-455 (539)
98 KOG0548 Molecular co-chaperone 98.5 0.00095 2.1E-08 72.7 34.9 188 691-891 228-420 (539)
99 PF12854 PPR_1: PPR repeat 98.4 2.4E-07 5.1E-12 61.9 4.0 32 858-889 2-33 (34)
100 PF04733 Coatomer_E: Coatomer 98.4 3E-06 6.4E-11 89.7 13.9 150 836-996 110-264 (290)
101 PLN02789 farnesyltranstransfer 98.4 0.00015 3.2E-09 78.0 26.9 191 810-1006 88-309 (320)
102 PF12854 PPR_1: PPR repeat 98.4 2.9E-07 6.2E-12 61.5 3.9 32 893-924 2-33 (34)
103 PRK10370 formate-dependent nit 98.4 3.2E-05 6.9E-10 77.3 19.3 164 835-1015 23-189 (198)
104 COG4783 Putative Zn-dependent 98.4 0.00025 5.4E-09 76.4 26.2 199 792-1014 272-473 (484)
105 PF04733 Coatomer_E: Coatomer 98.3 1.2E-05 2.6E-10 85.1 16.0 149 345-501 112-263 (290)
106 PRK04841 transcriptional regul 98.3 0.0016 3.4E-08 83.1 38.1 334 205-538 384-760 (903)
107 PLN02789 farnesyltranstransfer 98.3 0.00021 4.6E-09 76.8 24.4 208 804-1016 47-268 (320)
108 KOG1070 rRNA processing protei 98.3 0.00025 5.3E-09 84.9 26.5 228 227-457 1455-1689(1710)
109 KOG1125 TPR repeat-containing 98.3 5.1E-05 1.1E-09 83.0 19.5 219 771-995 297-525 (579)
110 PRK04841 transcriptional regul 98.3 0.0035 7.6E-08 80.0 39.7 203 690-892 534-760 (903)
111 TIGR03302 OM_YfiO outer membra 98.3 0.00015 3.2E-09 75.7 22.5 184 794-997 33-232 (235)
112 KOG1125 TPR repeat-containing 98.3 0.00014 3E-09 79.7 22.1 252 240-497 295-565 (579)
113 KOG0624 dsRNA-activated protei 98.3 0.0049 1.1E-07 63.1 31.2 292 692-996 43-369 (504)
114 PRK14720 transcript cleavage f 98.2 0.00028 6.2E-09 84.2 26.1 266 686-1010 30-297 (906)
115 KOG1128 Uncharacterized conser 98.2 0.00014 2.9E-09 81.8 21.8 219 227-501 395-614 (777)
116 KOG1914 mRNA cleavage and poly 98.2 0.015 3.2E-07 63.6 42.1 218 775-994 309-536 (656)
117 KOG2053 Mitochondrial inherita 98.2 0.025 5.5E-07 65.7 48.6 116 206-327 20-137 (932)
118 KOG1128 Uncharacterized conser 98.2 5.8E-05 1.3E-09 84.6 17.7 223 772-1015 411-635 (777)
119 KOG0624 dsRNA-activated protei 98.2 0.0058 1.3E-07 62.6 30.0 313 199-539 42-371 (504)
120 KOG1070 rRNA processing protei 98.2 0.00071 1.5E-08 81.2 26.6 175 349-526 1511-1688(1710)
121 PRK15359 type III secretion sy 98.1 0.00015 3.3E-09 68.4 17.3 103 868-973 29-131 (144)
122 KOG3060 Uncharacterized conser 98.1 0.0015 3.3E-08 64.3 23.9 172 796-972 54-229 (289)
123 COG5010 TadD Flp pilus assembl 98.1 0.00037 8E-09 69.2 19.9 158 798-958 70-227 (257)
124 PRK15179 Vi polysaccharide bio 98.1 0.00064 1.4E-08 80.7 25.7 246 756-1027 26-281 (694)
125 KOG1914 mRNA cleavage and poly 98.1 0.025 5.5E-07 61.9 39.8 121 899-1021 367-490 (656)
126 COG5010 TadD Flp pilus assembl 98.1 0.00021 4.6E-09 70.9 17.1 152 835-991 73-225 (257)
127 KOG3081 Vesicle coat complex C 98.1 0.0011 2.4E-08 65.7 21.8 151 835-996 115-270 (299)
128 PRK15179 Vi polysaccharide bio 98.1 0.0011 2.4E-08 78.6 26.4 238 716-980 22-267 (694)
129 PRK15359 type III secretion sy 98.1 9.4E-05 2E-09 69.8 14.2 116 884-1007 14-129 (144)
130 TIGR03302 OM_YfiO outer membra 98.0 0.00047 1E-08 71.9 20.6 184 335-538 33-232 (235)
131 TIGR02552 LcrH_SycD type III s 98.0 0.00015 3.3E-09 68.0 15.1 107 897-1007 16-122 (135)
132 PRK10370 formate-dependent nit 98.0 0.00086 1.9E-08 67.0 20.8 122 841-965 52-176 (198)
133 KOG2053 Mitochondrial inherita 98.0 0.081 1.7E-06 61.7 52.7 161 830-995 438-606 (932)
134 PRK14720 transcript cleavage f 97.9 0.0048 1E-07 74.0 27.7 56 338-395 119-174 (906)
135 COG4783 Putative Zn-dependent 97.8 0.0014 3E-08 70.9 19.2 136 806-962 318-454 (484)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00065 1.4E-08 74.4 16.3 121 869-995 175-295 (395)
137 TIGR02552 LcrH_SycD type III s 97.7 0.00082 1.8E-08 63.0 14.6 92 869-962 23-114 (135)
138 TIGR00756 PPR pentatricopeptid 97.7 4.7E-05 1E-09 51.7 4.5 33 970-1002 2-34 (35)
139 KOG3081 Vesicle coat complex C 97.7 0.02 4.2E-07 57.2 23.7 120 380-503 147-271 (299)
140 TIGR00756 PPR pentatricopeptid 97.7 5.2E-05 1.1E-09 51.5 4.3 32 901-932 3-34 (35)
141 PF09976 TPR_21: Tetratricopep 97.6 0.0025 5.5E-08 60.4 16.1 125 866-994 15-144 (145)
142 PF13812 PPR_3: Pentatricopept 97.6 0.0001 2.2E-09 49.7 4.5 33 969-1001 2-34 (34)
143 KOG3060 Uncharacterized conser 97.6 0.032 6.9E-07 55.3 22.8 84 383-467 99-182 (289)
144 PF13812 PPR_3: Pentatricopept 97.6 0.00011 2.4E-09 49.4 4.3 31 900-930 3-33 (34)
145 PF09976 TPR_21: Tetratricopep 97.6 0.002 4.3E-08 61.1 14.5 115 807-923 24-143 (145)
146 PF10037 MRP-S27: Mitochondria 97.5 0.0011 2.4E-08 72.9 12.8 119 860-978 63-183 (429)
147 cd00189 TPR Tetratricopeptide 97.4 0.0018 3.8E-08 55.8 11.6 94 901-996 3-96 (100)
148 PF12895 Apc3: Anaphase-promot 97.4 0.00037 8E-09 58.8 6.1 81 911-993 2-83 (84)
149 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0046 9.9E-08 67.9 15.8 90 341-431 206-295 (395)
150 PF10037 MRP-S27: Mitochondria 97.4 0.0022 4.7E-08 70.7 13.3 122 400-521 62-185 (429)
151 PF08579 RPM2: Mitochondrial r 97.3 0.0022 4.9E-08 54.9 10.0 74 237-310 32-114 (120)
152 PF01535 PPR: PPR repeat; Int 97.3 0.00023 4.9E-09 46.7 3.2 30 970-999 2-31 (31)
153 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0072 1.6E-07 54.9 14.4 94 901-996 5-104 (119)
154 PF01535 PPR: PPR repeat; Int 97.3 0.00031 6.7E-09 46.0 3.6 25 901-925 3-27 (31)
155 PLN03088 SGT1, suppressor of 97.3 0.0045 9.7E-08 68.4 14.4 99 870-971 9-107 (356)
156 cd00189 TPR Tetratricopeptide 97.2 0.0046 9.9E-08 53.1 11.7 91 869-961 6-96 (100)
157 PF08579 RPM2: Mitochondrial r 97.2 0.0057 1.2E-07 52.5 11.3 78 868-945 30-116 (120)
158 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0062 1.3E-07 55.4 12.8 107 864-973 3-115 (119)
159 PRK15363 pathogenicity island 97.2 0.0083 1.8E-07 55.8 13.1 103 899-1004 36-140 (157)
160 KOG0553 TPR repeat-containing 97.2 0.0027 5.9E-08 64.5 10.4 97 910-1011 93-190 (304)
161 CHL00033 ycf3 photosystem I as 97.1 0.0076 1.6E-07 58.9 13.3 95 898-993 35-138 (168)
162 PRK02603 photosystem I assembl 97.1 0.015 3.2E-07 57.0 15.0 83 865-949 37-122 (172)
163 PF06239 ECSIT: Evolutionarily 97.1 0.0091 2E-07 58.1 12.3 87 227-313 44-151 (228)
164 PF06239 ECSIT: Evolutionarily 97.0 0.0094 2E-07 58.0 12.1 101 860-960 44-166 (228)
165 KOG0550 Molecular chaperone (D 97.0 0.042 9.1E-07 58.3 17.5 291 699-1017 61-371 (486)
166 COG4235 Cytochrome c biogenesi 97.0 0.034 7.3E-07 57.2 16.5 115 895-1013 153-270 (287)
167 PLN03088 SGT1, suppressor of 97.0 0.015 3.2E-07 64.3 15.2 98 835-936 9-106 (356)
168 PF13432 TPR_16: Tetratricopep 96.9 0.0028 6.2E-08 50.3 6.8 57 939-996 3-59 (65)
169 COG4700 Uncharacterized protei 96.9 0.17 3.8E-06 47.7 18.3 134 859-996 85-221 (251)
170 PF14938 SNAP: Soluble NSF att 96.9 0.19 4.1E-06 53.7 21.9 22 729-750 42-63 (282)
171 COG3898 Uncharacterized membra 96.8 0.86 1.9E-05 48.3 29.4 251 735-1001 133-396 (531)
172 PRK10866 outer membrane biogen 96.8 0.2 4.3E-06 51.9 21.1 175 802-995 40-239 (243)
173 PF05843 Suf: Suppressor of fo 96.8 0.019 4.2E-07 61.0 14.0 131 829-962 2-136 (280)
174 PF14559 TPR_19: Tetratricopep 96.8 0.0038 8.2E-08 50.1 6.6 61 945-1008 3-63 (68)
175 PRK15363 pathogenicity island 96.8 0.025 5.3E-07 52.7 12.6 96 795-891 36-131 (157)
176 PRK10153 DNA-binding transcrip 96.8 0.062 1.4E-06 62.1 18.7 63 932-996 419-481 (517)
177 PRK02603 photosystem I assembl 96.8 0.042 9E-07 53.8 15.1 94 829-923 36-131 (172)
178 KOG0553 TPR repeat-containing 96.8 0.071 1.5E-06 54.5 16.5 130 835-968 88-221 (304)
179 PF05843 Suf: Suppressor of fo 96.8 0.036 7.8E-07 59.0 15.3 130 796-927 3-136 (280)
180 PF13414 TPR_11: TPR repeat; P 96.7 0.0067 1.5E-07 48.8 7.5 64 932-996 2-66 (69)
181 CHL00033 ycf3 photosystem I as 96.7 0.022 4.9E-07 55.5 12.6 95 863-958 35-138 (168)
182 PF12895 Apc3: Anaphase-promot 96.7 0.0045 9.7E-08 52.2 6.6 79 877-958 3-83 (84)
183 PF04840 Vps16_C: Vps16, C-ter 96.7 0.41 9E-06 51.5 22.7 109 865-993 179-287 (319)
184 PRK10866 outer membrane biogen 96.7 0.25 5.4E-06 51.2 20.4 178 340-536 37-239 (243)
185 KOG2796 Uncharacterized conser 96.7 0.66 1.4E-05 46.4 21.4 129 867-996 181-314 (366)
186 PRK10153 DNA-binding transcrip 96.7 0.075 1.6E-06 61.4 18.0 67 897-965 419-485 (517)
187 PF14938 SNAP: Soluble NSF att 96.5 0.1 2.2E-06 55.8 17.1 149 372-535 96-263 (282)
188 PF03704 BTAD: Bacterial trans 96.5 0.14 3E-06 48.6 16.0 72 935-1007 64-140 (146)
189 PF07079 DUF1347: Protein of u 96.5 1.8 3.9E-05 47.1 47.9 59 838-903 472-530 (549)
190 KOG2041 WD40 repeat protein [G 96.4 2.4 5.2E-05 48.3 27.4 42 873-914 1031-1073(1189)
191 PF13432 TPR_16: Tetratricopep 96.3 0.017 3.7E-07 45.7 7.4 61 904-965 3-63 (65)
192 PF12688 TPR_5: Tetratrico pep 96.3 0.12 2.7E-06 46.3 13.4 82 773-854 15-101 (120)
193 PF13414 TPR_11: TPR repeat; P 96.3 0.018 3.9E-07 46.3 7.5 66 897-963 2-68 (69)
194 KOG2041 WD40 repeat protein [G 96.3 2.9 6.2E-05 47.8 29.3 203 227-465 689-904 (1189)
195 PF13371 TPR_9: Tetratricopept 96.3 0.02 4.4E-07 46.5 7.9 55 941-996 3-57 (73)
196 PF12688 TPR_5: Tetratrico pep 96.1 0.23 4.9E-06 44.7 14.1 89 343-431 9-102 (120)
197 PF14559 TPR_19: Tetratricopep 96.1 0.018 4E-07 46.0 6.7 64 206-272 2-65 (68)
198 COG4700 Uncharacterized protei 96.1 0.92 2E-05 43.0 18.1 133 262-396 86-219 (251)
199 PRK10803 tol-pal system protei 96.1 0.064 1.4E-06 56.0 12.3 94 901-996 146-245 (263)
200 PF13525 YfiO: Outer membrane 96.1 0.63 1.4E-05 46.9 19.2 169 801-988 12-198 (203)
201 PF03704 BTAD: Bacterial trans 95.9 0.46 1E-05 44.9 16.4 72 371-442 63-139 (146)
202 KOG2114 Vacuolar assembly/sort 95.9 5 0.00011 47.2 26.7 119 373-501 337-458 (933)
203 PF04840 Vps16_C: Vps16, C-ter 95.9 3.3 7.2E-05 44.7 26.9 111 829-959 178-288 (319)
204 COG4235 Cytochrome c biogenesi 95.8 0.41 8.9E-06 49.5 16.1 108 818-927 146-256 (287)
205 PF13525 YfiO: Outer membrane 95.5 1.5 3.3E-05 44.1 18.8 59 344-402 14-74 (203)
206 PRK10803 tol-pal system protei 95.5 0.23 5.1E-06 51.8 13.2 97 865-965 145-249 (263)
207 KOG1585 Protein required for f 95.4 1.8 4E-05 43.0 17.8 27 796-822 33-59 (308)
208 KOG1130 Predicted G-alpha GTPa 95.4 0.46 1E-05 50.5 14.8 97 829-925 236-342 (639)
209 KOG2280 Vacuolar assembly/sort 95.4 7.5 0.00016 45.3 33.7 268 688-991 508-793 (829)
210 PF13424 TPR_12: Tetratricopep 95.3 0.043 9.3E-07 45.3 6.0 61 899-959 6-72 (78)
211 PF13371 TPR_9: Tetratricopept 95.3 0.12 2.5E-06 42.0 8.4 59 906-965 3-61 (73)
212 COG0457 NrfG FOG: TPR repeat [ 95.3 3.9 8.5E-05 41.7 27.2 123 872-996 139-264 (291)
213 PF13281 DUF4071: Domain of un 95.3 2.1 4.5E-05 46.7 19.8 75 799-873 146-227 (374)
214 KOG0550 Molecular chaperone (D 95.3 2 4.4E-05 46.1 19.0 106 449-557 259-370 (486)
215 KOG2796 Uncharacterized conser 95.2 3.9 8.4E-05 41.2 22.0 135 831-966 180-319 (366)
216 PF13424 TPR_12: Tetratricopep 95.2 0.057 1.2E-06 44.6 6.3 62 934-995 6-73 (78)
217 KOG1538 Uncharacterized conser 95.2 4.3 9.4E-05 46.0 21.8 89 441-540 749-848 (1081)
218 KOG1538 Uncharacterized conser 95.2 0.54 1.2E-05 52.8 15.0 87 900-997 749-846 (1081)
219 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.17 3.7E-06 55.6 11.0 99 895-999 72-176 (453)
220 PF08631 SPO22: Meiosis protei 95.1 5.6 0.00012 42.3 26.1 16 978-993 256-271 (278)
221 PRK15331 chaperone protein Sic 95.0 0.99 2.1E-05 42.5 14.3 88 907-996 46-133 (165)
222 KOG3941 Intermediate in Toll s 95.0 0.3 6.5E-06 49.2 11.4 84 878-961 87-187 (406)
223 KOG1130 Predicted G-alpha GTPa 95.0 0.77 1.7E-05 48.9 14.8 131 865-995 197-342 (639)
224 PF10300 DUF3808: Protein of u 94.8 1.1 2.4E-05 51.5 17.3 165 828-995 188-374 (468)
225 PF13281 DUF4071: Domain of un 94.7 3.9 8.5E-05 44.6 20.0 169 832-1003 145-339 (374)
226 KOG2280 Vacuolar assembly/sort 94.6 12 0.00025 43.8 27.8 110 898-1026 684-793 (829)
227 KOG1920 IkappaB kinase complex 94.5 8.3 0.00018 47.4 23.4 201 651-890 851-1053(1265)
228 COG3118 Thioredoxin domain-con 94.4 4.2 9E-05 42.1 18.1 144 379-525 143-288 (304)
229 PLN03098 LPA1 LOW PSII ACCUMUL 94.4 0.73 1.6E-05 50.8 13.6 65 793-857 74-141 (453)
230 PF07079 DUF1347: Protein of u 94.3 10 0.00022 41.6 47.6 207 795-1011 299-533 (549)
231 PF12921 ATP13: Mitochondrial 94.0 0.58 1.3E-05 42.5 10.3 51 928-978 47-98 (126)
232 COG4105 ComL DNA uptake lipopr 94.0 8 0.00017 39.4 19.4 172 806-995 46-231 (254)
233 PF13428 TPR_14: Tetratricopep 94.0 0.15 3.3E-06 36.4 5.2 40 935-975 3-42 (44)
234 KOG0543 FKBP-type peptidyl-pro 94.0 0.92 2E-05 48.8 13.0 97 898-996 257-354 (397)
235 PF12921 ATP13: Mitochondrial 93.9 0.55 1.2E-05 42.7 9.9 52 963-1014 47-99 (126)
236 KOG2610 Uncharacterized conser 93.6 1.3 2.9E-05 45.9 12.9 117 806-924 115-235 (491)
237 COG3629 DnrI DNA-binding trans 93.5 0.37 8E-06 50.0 9.1 94 180-274 136-236 (280)
238 COG3898 Uncharacterized membra 93.5 12 0.00027 40.1 34.1 150 167-328 61-216 (531)
239 KOG3941 Intermediate in Toll s 93.5 0.49 1.1E-05 47.8 9.4 31 284-314 142-172 (406)
240 PRK15331 chaperone protein Sic 93.4 2.2 4.8E-05 40.2 13.0 88 380-468 47-134 (165)
241 smart00299 CLH Clathrin heavy 93.3 4.4 9.5E-05 37.8 15.5 125 832-979 11-136 (140)
242 PF04184 ST7: ST7 protein; In 93.3 17 0.00036 40.8 21.2 59 833-891 264-323 (539)
243 PF10300 DUF3808: Protein of u 93.3 4.3 9.2E-05 46.8 18.2 95 337-431 190-294 (468)
244 PRK11906 transcriptional regul 93.3 3 6.5E-05 46.3 15.8 162 829-994 252-433 (458)
245 PF04053 Coatomer_WDAD: Coatom 93.1 1.7 3.7E-05 49.2 14.3 130 831-993 298-427 (443)
246 COG4105 ComL DNA uptake lipopr 93.1 11 0.00025 38.3 21.0 58 479-537 172-232 (254)
247 KOG2610 Uncharacterized conser 93.0 0.8 1.7E-05 47.5 10.2 155 839-995 114-274 (491)
248 KOG1585 Protein required for f 93.0 9.2 0.0002 38.3 16.8 86 232-327 33-118 (308)
249 COG3118 Thioredoxin domain-con 92.9 8 0.00017 40.1 17.2 52 804-855 144-195 (304)
250 smart00299 CLH Clathrin heavy 92.6 8.1 0.00018 36.0 16.2 84 799-889 12-95 (140)
251 PF13431 TPR_17: Tetratricopep 92.3 0.2 4.4E-06 33.3 3.4 32 956-988 2-33 (34)
252 PF13170 DUF4003: Protein of u 92.2 5.2 0.00011 42.6 15.7 138 703-873 78-227 (297)
253 COG3629 DnrI DNA-binding trans 92.0 1.2 2.7E-05 46.2 10.3 79 898-977 153-236 (280)
254 COG1729 Uncharacterized protei 91.8 3.6 7.8E-05 42.2 13.2 96 372-468 144-244 (262)
255 COG1729 Uncharacterized protei 91.7 2.1 4.6E-05 43.8 11.4 94 901-996 145-243 (262)
256 PF04053 Coatomer_WDAD: Coatom 91.7 4.3 9.2E-05 46.1 15.1 101 206-325 272-372 (443)
257 PF09205 DUF1955: Domain of un 91.6 6.6 0.00014 35.2 12.6 60 869-929 92-151 (161)
258 PRK11906 transcriptional regul 91.6 16 0.00034 40.9 18.6 79 845-925 321-399 (458)
259 KOG4555 TPR repeat-containing 91.4 5 0.00011 35.8 11.6 91 803-893 52-145 (175)
260 KOG2114 Vacuolar assembly/sort 91.3 1.4 3.1E-05 51.5 10.8 143 834-994 374-516 (933)
261 COG5107 RNA14 Pre-mRNA 3'-end 91.3 26 0.00057 38.4 38.8 135 827-965 396-534 (660)
262 KOG1941 Acetylcholine receptor 91.2 9.7 0.00021 40.3 15.5 165 830-994 85-272 (518)
263 COG0457 NrfG FOG: TPR repeat [ 91.1 19 0.0004 36.4 32.8 225 736-965 37-268 (291)
264 KOG0543 FKBP-type peptidyl-pro 91.1 4 8.6E-05 44.2 13.1 61 372-432 259-319 (397)
265 PF13512 TPR_18: Tetratricopep 91.0 4.9 0.00011 37.1 11.9 53 381-433 21-76 (142)
266 KOG4555 TPR repeat-containing 90.6 3 6.4E-05 37.2 9.6 92 872-964 52-146 (175)
267 COG4785 NlpI Lipoprotein NlpI, 90.6 5.2 0.00011 39.2 12.0 201 804-1017 75-285 (297)
268 PF13428 TPR_14: Tetratricopep 90.3 0.85 1.8E-05 32.5 5.3 39 372-410 3-41 (44)
269 PF07035 Mic1: Colon cancer-as 90.0 13 0.00029 35.5 14.4 52 848-903 14-65 (167)
270 PF13512 TPR_18: Tetratricopep 89.9 13 0.00028 34.4 13.7 76 694-769 17-94 (142)
271 COG4649 Uncharacterized protei 89.9 18 0.00039 34.3 14.5 131 372-503 61-196 (221)
272 PF09205 DUF1955: Domain of un 89.7 15 0.00033 33.1 16.0 61 938-999 91-151 (161)
273 KOG1920 IkappaB kinase complex 89.3 68 0.0015 40.1 22.5 41 216-258 778-820 (1265)
274 KOG1941 Acetylcholine receptor 89.2 8.7 0.00019 40.7 13.4 192 829-1021 44-264 (518)
275 PF08631 SPO22: Meiosis protei 89.2 33 0.00072 36.4 28.1 162 372-535 86-272 (278)
276 PF04184 ST7: ST7 protein; In 89.1 14 0.00029 41.4 15.3 62 898-960 259-322 (539)
277 PF13170 DUF4003: Protein of u 88.9 36 0.00078 36.4 20.6 51 352-402 79-135 (297)
278 KOG1550 Extracellular protein 88.3 20 0.00043 42.4 17.8 82 775-858 228-323 (552)
279 PF13176 TPR_7: Tetratricopept 88.2 1 2.2E-05 30.4 4.2 26 970-995 1-26 (36)
280 PF13929 mRNA_stabil: mRNA sta 88.2 25 0.00054 36.7 15.7 59 227-285 199-258 (292)
281 PF09613 HrpB1_HrpK: Bacterial 87.9 15 0.00032 34.7 12.8 101 196-299 8-111 (160)
282 PF04097 Nic96: Nup93/Nic96; 87.6 39 0.00084 40.6 19.7 63 476-539 113-182 (613)
283 PF10345 Cohesin_load: Cohesin 87.3 76 0.0016 38.2 44.7 191 804-995 371-604 (608)
284 COG1747 Uncharacterized N-term 86.8 59 0.0013 36.5 20.8 185 193-414 64-249 (711)
285 PF10602 RPN7: 26S proteasome 86.6 8.9 0.00019 37.4 11.4 97 899-995 37-140 (177)
286 TIGR02561 HrpB1_HrpK type III 86.0 22 0.00047 33.0 12.4 64 196-260 8-74 (153)
287 PF13431 TPR_17: Tetratricopep 85.4 0.79 1.7E-05 30.5 2.3 32 817-848 2-33 (34)
288 COG5107 RNA14 Pre-mRNA 3'-end 85.0 67 0.0014 35.5 37.6 85 227-314 39-123 (660)
289 COG4649 Uncharacterized protei 84.5 38 0.00082 32.2 14.4 93 835-927 101-196 (221)
290 KOG4234 TPR repeat-containing 84.2 13 0.00029 36.0 10.6 92 871-965 103-200 (271)
291 PF07035 Mic1: Colon cancer-as 84.1 41 0.00088 32.3 15.6 48 286-337 15-62 (167)
292 PF13176 TPR_7: Tetratricopept 83.5 2.3 5.1E-05 28.6 4.1 23 901-923 2-24 (36)
293 PF09613 HrpB1_HrpK: Bacterial 82.9 43 0.00094 31.7 13.7 52 382-433 22-73 (160)
294 PF02259 FAT: FAT domain; Int 82.2 85 0.0018 34.6 25.8 65 862-926 145-212 (352)
295 PF10602 RPN7: 26S proteasome 82.1 14 0.00031 36.0 10.5 61 829-889 37-99 (177)
296 KOG0276 Vesicle coat complex C 81.8 8.5 0.00018 43.6 9.6 44 840-889 649-692 (794)
297 COG4455 ImpE Protein of avirul 81.7 7 0.00015 38.4 7.8 92 900-1002 3-96 (273)
298 KOG4570 Uncharacterized conser 80.8 13 0.00028 38.7 9.8 99 403-503 63-164 (418)
299 PF00515 TPR_1: Tetratricopept 80.1 4.1 8.8E-05 26.8 4.3 27 970-996 3-29 (34)
300 KOG4648 Uncharacterized conser 79.1 8.2 0.00018 40.4 7.9 92 871-965 105-197 (536)
301 PF07719 TPR_2: Tetratricopept 79.0 4.6 9.9E-05 26.4 4.3 27 970-996 3-29 (34)
302 PF13374 TPR_10: Tetratricopep 78.4 4.8 0.0001 27.8 4.5 28 969-996 3-30 (42)
303 KOG1550 Extracellular protein 78.4 1.5E+02 0.0033 35.1 25.8 248 733-996 260-537 (552)
304 PF00515 TPR_1: Tetratricopept 78.3 5.6 0.00012 26.1 4.6 29 935-963 3-31 (34)
305 COG3947 Response regulator con 78.2 67 0.0015 33.4 13.7 60 372-431 281-340 (361)
306 PRK09687 putative lyase; Provi 77.4 1E+02 0.0022 32.7 28.3 116 833-962 147-263 (280)
307 KOG1586 Protein required for f 76.7 88 0.0019 31.5 15.5 21 945-965 166-186 (288)
308 TIGR02561 HrpB1_HrpK type III 76.4 66 0.0014 30.0 12.7 53 382-434 22-74 (153)
309 KOG4570 Uncharacterized conser 75.7 13 0.00027 38.8 8.0 103 365-468 59-164 (418)
310 PF11207 DUF2989: Protein of u 75.0 52 0.0011 32.5 11.7 71 213-284 124-197 (203)
311 PF13374 TPR_10: Tetratricopep 74.5 6.8 0.00015 27.0 4.4 29 933-961 2-30 (42)
312 KOG0403 Neoplastic transformat 74.3 1.5E+02 0.0032 32.9 28.5 74 798-875 513-586 (645)
313 PF07719 TPR_2: Tetratricopept 74.3 8.3 0.00018 25.1 4.6 29 935-963 3-31 (34)
314 PF11207 DUF2989: Protein of u 74.0 25 0.00054 34.6 9.2 73 915-988 123-198 (203)
315 PF13929 mRNA_stabil: mRNA sta 73.4 1.3E+02 0.0027 31.7 16.2 136 243-378 141-286 (292)
316 PF13934 ELYS: Nuclear pore co 71.2 43 0.00093 34.2 10.9 83 939-1027 114-200 (226)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 70.9 25 0.00054 29.8 7.2 35 891-925 35-69 (103)
318 COG2909 MalT ATP-dependent tra 69.9 2.7E+02 0.0058 34.1 26.3 222 800-1021 421-677 (894)
319 PRK15180 Vi polysaccharide bio 69.9 35 0.00076 37.7 10.0 129 835-968 296-426 (831)
320 COG1747 Uncharacterized N-term 69.6 2E+02 0.0044 32.6 22.5 164 299-469 65-235 (711)
321 PHA02875 ankyrin repeat protei 68.9 1.2E+02 0.0025 34.6 15.3 17 377-393 139-155 (413)
322 TIGR03504 FimV_Cterm FimV C-te 68.9 7.1 0.00015 27.7 3.3 24 974-997 5-28 (44)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 68.2 75 0.0016 27.1 9.6 62 210-273 22-84 (103)
324 PRK09687 putative lyase; Provi 67.9 1.7E+02 0.0037 31.1 27.7 48 228-277 66-117 (280)
325 PF02284 COX5A: Cytochrome c o 67.4 74 0.0016 27.4 9.3 37 890-926 37-73 (108)
326 PF08424 NRDE-2: NRDE-2, neces 67.4 1.9E+02 0.0042 31.4 17.9 118 845-964 48-185 (321)
327 COG4785 NlpI Lipoprotein NlpI, 67.3 1.4E+02 0.003 29.8 20.4 161 795-964 100-268 (297)
328 COG4455 ImpE Protein of avirul 67.1 38 0.00083 33.6 8.7 74 374-447 5-80 (273)
329 PF07721 TPR_4: Tetratricopept 66.1 7.8 0.00017 23.8 2.7 22 971-992 4-25 (26)
330 PF10345 Cohesin_load: Cohesin 65.8 3E+02 0.0066 33.1 44.5 183 354-537 40-253 (608)
331 COG2976 Uncharacterized protei 65.4 1.4E+02 0.0031 29.3 14.3 93 904-998 95-189 (207)
332 COG2976 Uncharacterized protei 63.7 1.5E+02 0.0033 29.1 13.7 55 343-399 134-188 (207)
333 KOG2471 TPR repeat-containing 62.9 2.7E+02 0.0057 31.5 18.0 106 837-944 249-380 (696)
334 COG3947 Response regulator con 62.4 2.1E+02 0.0045 30.1 17.8 66 937-1003 283-353 (361)
335 TIGR02508 type_III_yscG type I 61.8 63 0.0014 27.7 7.9 86 914-1007 21-106 (115)
336 KOG2063 Vacuolar assembly/sort 61.7 3.4E+02 0.0073 33.7 17.2 40 344-383 600-639 (877)
337 KOG3364 Membrane protein invol 61.7 1.2E+02 0.0027 27.7 10.1 72 930-1003 29-104 (149)
338 KOG4648 Uncharacterized conser 61.5 54 0.0012 34.7 9.2 55 802-856 105-159 (536)
339 PF13181 TPR_8: Tetratricopept 61.2 21 0.00046 23.2 4.4 28 969-996 2-29 (34)
340 KOG4234 TPR repeat-containing 60.9 1.2E+02 0.0026 29.8 10.6 58 344-402 143-200 (271)
341 PF02284 COX5A: Cytochrome c o 60.9 1.1E+02 0.0024 26.4 9.7 50 774-823 25-74 (108)
342 PF04097 Nic96: Nup93/Nic96; 60.8 3.7E+02 0.0079 32.4 25.5 36 514-551 263-298 (613)
343 PF06552 TOM20_plant: Plant sp 60.7 1.5E+02 0.0032 28.8 11.3 74 845-928 52-137 (186)
344 KOG1464 COP9 signalosome, subu 60.7 2.1E+02 0.0045 29.5 19.5 63 688-750 192-259 (440)
345 PF13174 TPR_6: Tetratricopept 60.7 15 0.00032 23.6 3.6 26 971-996 3-28 (33)
346 PF00637 Clathrin: Region in C 60.2 2.5 5.4E-05 39.7 -0.5 54 834-887 13-66 (143)
347 PF08424 NRDE-2: NRDE-2, neces 60.1 2.6E+02 0.0056 30.4 15.3 118 776-894 48-185 (321)
348 KOG0276 Vesicle coat complex C 58.6 93 0.002 35.8 11.0 131 197-360 616-746 (794)
349 PRK15180 Vi polysaccharide bio 58.4 3.1E+02 0.0067 30.8 28.7 120 382-503 301-420 (831)
350 TIGR02508 type_III_yscG type I 58.3 1.1E+02 0.0024 26.3 8.7 84 175-269 21-106 (115)
351 KOG2063 Vacuolar assembly/sort 57.2 3.8E+02 0.0082 33.3 16.6 195 796-1016 506-745 (877)
352 PF13174 TPR_6: Tetratricopept 57.1 19 0.00042 23.0 3.7 26 938-963 5-30 (33)
353 PF13762 MNE1: Mitochondrial s 56.4 1.7E+02 0.0037 27.3 11.7 81 303-383 42-128 (145)
354 PF00637 Clathrin: Region in C 56.3 6.4 0.00014 36.9 1.6 54 271-324 13-66 (143)
355 KOG0376 Serine-threonine phosp 55.9 18 0.00038 40.3 5.0 111 906-1021 12-123 (476)
356 PF13181 TPR_8: Tetratricopept 55.2 21 0.00045 23.2 3.6 28 935-962 3-30 (34)
357 COG0790 FOG: TPR repeat, SEL1 54.6 2.9E+02 0.0063 29.4 24.5 155 843-1007 92-276 (292)
358 PRK10941 hypothetical protein; 53.1 1.1E+02 0.0024 32.1 10.2 78 937-1015 185-263 (269)
359 PF06552 TOM20_plant: Plant sp 52.9 1.5E+02 0.0032 28.8 9.9 73 880-962 52-136 (186)
360 PF10579 Rapsyn_N: Rapsyn N-te 51.5 45 0.00097 27.2 5.3 47 910-956 18-66 (80)
361 KOG4279 Serine/threonine prote 50.1 2.1E+02 0.0046 34.0 12.2 201 705-964 181-397 (1226)
362 KOG1586 Protein required for f 49.9 3E+02 0.0064 28.0 20.3 25 412-436 162-186 (288)
363 PF09986 DUF2225: Uncharacteri 49.6 1.6E+02 0.0034 29.8 10.4 29 969-997 166-194 (214)
364 PF07163 Pex26: Pex26 protein; 49.4 1.6E+02 0.0034 30.7 10.0 87 835-921 90-181 (309)
365 KOG0890 Protein kinase of the 48.8 9.3E+02 0.02 33.5 25.8 335 158-506 1382-1734(2382)
366 KOG4642 Chaperone-dependent E3 48.7 2.7E+02 0.0058 28.4 11.2 37 991-1027 218-256 (284)
367 KOG0687 26S proteasome regulat 48.7 3.7E+02 0.008 28.8 14.7 99 723-824 105-211 (393)
368 PF02259 FAT: FAT domain; Int 48.6 4E+02 0.0086 29.1 24.2 63 370-432 146-212 (352)
369 TIGR03504 FimV_Cterm FimV C-te 47.4 38 0.00081 24.2 3.9 24 834-857 5-28 (44)
370 PF10579 Rapsyn_N: Rapsyn N-te 46.6 39 0.00085 27.5 4.3 49 941-990 15-65 (80)
371 KOG1258 mRNA processing protei 46.4 5.4E+02 0.012 30.0 35.8 116 387-503 62-180 (577)
372 cd08819 CARD_MDA5_2 Caspase ac 46.2 1.4E+02 0.003 25.0 7.4 66 917-988 21-86 (88)
373 PF09477 Type_III_YscG: Bacter 46.0 1.7E+02 0.0037 25.6 8.1 79 843-928 21-99 (116)
374 COG5187 RPN7 26S proteasome re 45.9 2.9E+02 0.0064 28.8 11.2 101 722-823 115-221 (412)
375 KOG4507 Uncharacterized conser 45.8 80 0.0017 36.1 7.9 56 870-926 649-704 (886)
376 PF10366 Vps39_1: Vacuolar sor 44.5 2E+02 0.0042 25.4 8.9 27 970-996 41-67 (108)
377 PF07163 Pex26: Pex26 protein; 44.4 2.1E+02 0.0046 29.8 10.0 22 307-328 125-146 (309)
378 KOG2066 Vacuolar assembly/sort 44.0 6.6E+02 0.014 30.4 26.7 101 203-312 364-467 (846)
379 smart00028 TPR Tetratricopepti 44.0 40 0.00087 20.5 3.7 24 971-994 4-27 (34)
380 PHA02875 ankyrin repeat protei 43.3 3.7E+02 0.0081 30.3 13.8 137 206-358 10-155 (413)
381 PF13762 MNE1: Mitochondrial s 43.1 2.5E+02 0.0054 26.3 9.6 89 190-278 32-128 (145)
382 KOG2214 Predicted esterase of 43.0 1.1E+02 0.0024 34.5 8.5 114 919-1038 191-326 (543)
383 COG2909 MalT ATP-dependent tra 42.6 7.4E+02 0.016 30.6 33.3 221 311-534 426-684 (894)
384 PF09477 Type_III_YscG: Bacter 41.8 2.2E+02 0.0048 24.9 8.2 77 878-961 21-97 (116)
385 cd08819 CARD_MDA5_2 Caspase ac 40.6 1.5E+02 0.0032 24.9 6.8 65 389-458 21-85 (88)
386 KOG4507 Uncharacterized conser 40.4 1.2E+02 0.0025 34.9 8.2 149 297-447 568-718 (886)
387 PF14853 Fis1_TPR_C: Fis1 C-te 40.3 93 0.002 23.2 5.2 32 974-1007 7-38 (53)
388 PF14561 TPR_20: Tetratricopep 39.5 1.6E+02 0.0036 24.8 7.4 52 932-983 21-73 (90)
389 KOG2297 Predicted translation 39.5 4.9E+02 0.011 27.6 17.9 17 407-423 324-340 (412)
390 PRK11619 lytic murein transgly 39.1 7.8E+02 0.017 29.8 39.6 249 735-1003 254-511 (644)
391 smart00386 HAT HAT (Half-A-TPR 38.2 70 0.0015 20.1 4.1 29 947-976 1-29 (33)
392 KOG1258 mRNA processing protei 37.9 7.2E+02 0.016 29.1 38.7 184 687-877 297-489 (577)
393 PF09986 DUF2225: Uncharacteri 37.7 4.5E+02 0.0097 26.6 11.8 51 915-965 142-197 (214)
394 PF14689 SPOB_a: Sensor_kinase 37.5 94 0.002 24.1 5.1 22 938-959 28-49 (62)
395 PF11846 DUF3366: Domain of un 36.9 1.3E+02 0.0029 29.7 7.7 33 930-962 141-173 (193)
396 PF11846 DUF3366: Domain of un 36.3 1.6E+02 0.0035 29.1 8.2 52 875-926 120-172 (193)
397 PRK13342 recombination factor 35.6 7E+02 0.015 28.2 20.2 44 832-875 231-277 (413)
398 KOG4521 Nuclear pore complex, 34.7 7.4E+02 0.016 31.6 14.0 122 865-992 985-1126(1480)
399 KOG0403 Neoplastic transformat 33.9 7.2E+02 0.016 27.9 27.1 93 868-965 514-614 (645)
400 PF09670 Cas_Cas02710: CRISPR- 33.4 4E+02 0.0086 29.8 11.4 57 835-892 138-198 (379)
401 PF11848 DUF3368: Domain of un 33.4 1.4E+02 0.0029 21.8 5.1 29 243-271 15-43 (48)
402 KOG1114 Tripeptidyl peptidase 33.3 1E+03 0.023 29.6 16.5 124 806-949 1159-1283(1304)
403 PF11663 Toxin_YhaV: Toxin wit 33.1 42 0.00091 30.5 2.9 28 244-273 109-136 (140)
404 KOG3636 Uncharacterized conser 32.9 7.3E+02 0.016 27.7 15.2 185 352-555 72-271 (669)
405 PF09670 Cas_Cas02710: CRISPR- 32.9 6.2E+02 0.013 28.3 12.8 56 801-857 138-198 (379)
406 cd00280 TRFH Telomeric Repeat 32.8 2.2E+02 0.0048 27.7 7.6 48 914-961 85-139 (200)
407 PF04910 Tcf25: Transcriptiona 32.8 7.2E+02 0.016 27.5 19.1 57 870-926 110-167 (360)
408 KOG4077 Cytochrome c oxidase, 32.7 2.3E+02 0.0049 25.6 7.1 39 888-926 74-112 (149)
409 PRK11619 lytic murein transgly 32.0 1E+03 0.022 28.9 39.9 323 193-534 127-464 (644)
410 PF11817 Foie-gras_1: Foie gra 31.6 1.9E+02 0.004 30.1 8.0 59 937-995 182-245 (247)
411 PF12862 Apc5: Anaphase-promot 31.0 2.5E+02 0.0054 23.8 7.4 23 973-995 46-68 (94)
412 PF10366 Vps39_1: Vacuolar sor 30.9 2.3E+02 0.005 24.9 7.2 27 830-856 41-67 (108)
413 PF02847 MA3: MA3 domain; Int 30.8 2.1E+02 0.0046 25.1 7.3 21 376-396 8-28 (113)
414 KOG1464 COP9 signalosome, subu 30.7 6.2E+02 0.014 26.2 24.6 265 699-974 39-343 (440)
415 PF04910 Tcf25: Transcriptiona 30.4 7.8E+02 0.017 27.2 18.5 56 638-713 11-66 (360)
416 KOG0551 Hsp90 co-chaperone CNS 29.9 2.6E+02 0.0057 29.9 8.3 85 908-993 91-178 (390)
417 COG2178 Predicted RNA-binding 29.9 5.5E+02 0.012 25.3 10.5 17 945-961 133-149 (204)
418 COG4941 Predicted RNA polymera 29.9 7.4E+02 0.016 26.8 11.9 125 844-971 272-403 (415)
419 KOG0686 COP9 signalosome, subu 29.8 8.1E+02 0.018 27.2 14.3 62 795-856 151-215 (466)
420 cd00280 TRFH Telomeric Repeat 29.0 3.3E+02 0.0072 26.5 8.1 39 904-945 117-155 (200)
421 PF09454 Vps23_core: Vps23 cor 28.9 94 0.002 24.4 3.8 51 192-243 5-55 (65)
422 KOG2659 LisH motif-containing 28.6 4.1E+02 0.009 26.9 9.1 109 182-290 13-128 (228)
423 KOG2908 26S proteasome regulat 28.6 5.1E+02 0.011 28.0 10.1 144 637-780 23-178 (380)
424 PF11838 ERAP1_C: ERAP1-like C 28.6 7.6E+02 0.017 26.5 19.4 189 307-499 45-262 (324)
425 KOG1308 Hsp70-interacting prot 28.6 28 0.00061 37.0 1.2 118 874-996 125-243 (377)
426 KOG4077 Cytochrome c oxidase, 28.4 3.2E+02 0.0069 24.7 7.3 46 355-400 69-114 (149)
427 KOG2422 Uncharacterized conser 28.4 1E+03 0.022 27.9 16.6 57 343-399 350-407 (665)
428 COG2178 Predicted RNA-binding 28.4 5.9E+02 0.013 25.1 10.7 18 909-926 132-149 (204)
429 PF14689 SPOB_a: Sensor_kinase 28.3 1.9E+02 0.0042 22.4 5.5 27 864-890 24-50 (62)
430 PF11848 DUF3368: Domain of un 28.2 1.7E+02 0.0037 21.2 4.9 34 275-308 12-45 (48)
431 PF07575 Nucleopor_Nup85: Nup8 27.9 1.1E+03 0.024 28.1 19.0 28 684-712 146-173 (566)
432 KOG3364 Membrane protein invol 26.5 4.4E+02 0.0095 24.4 7.9 51 774-824 50-101 (149)
433 COG0790 FOG: TPR repeat, SEL1 26.3 7.9E+02 0.017 26.0 22.0 116 843-965 128-269 (292)
434 PRK10564 maltose regulon perip 26.0 1.3E+02 0.0028 31.8 5.4 28 269-296 261-288 (303)
435 COG5187 RPN7 26S proteasome re 25.8 8E+02 0.017 25.8 14.5 98 898-995 115-219 (412)
436 KOG0687 26S proteasome regulat 25.7 8.6E+02 0.019 26.2 19.4 103 435-539 66-174 (393)
437 COG0735 Fur Fe2+/Zn2+ uptake r 25.6 3.4E+02 0.0074 25.4 7.8 62 252-314 8-69 (145)
438 KOG4642 Chaperone-dependent E3 25.5 7.5E+02 0.016 25.4 10.6 58 373-430 47-104 (284)
439 PF07575 Nucleopor_Nup85: Nup8 25.2 1.8E+02 0.0038 34.8 7.3 56 269-326 409-464 (566)
440 PF14669 Asp_Glu_race_2: Putat 25.1 6.7E+02 0.015 24.7 16.9 25 444-468 137-161 (233)
441 PRK10941 hypothetical protein; 24.9 6.8E+02 0.015 26.4 10.6 60 798-857 185-244 (269)
442 PF02847 MA3: MA3 domain; Int 24.8 3.2E+02 0.0069 24.0 7.3 22 868-889 7-28 (113)
443 COG0735 Fur Fe2+/Zn2+ uptake r 24.7 3.2E+02 0.0069 25.6 7.4 58 820-877 12-69 (145)
444 PF10475 DUF2450: Protein of u 24.6 4.2E+02 0.009 28.3 9.3 48 697-750 108-155 (291)
445 smart00544 MA3 Domain in DAP-5 24.3 4.9E+02 0.011 22.8 10.2 21 376-396 8-28 (113)
446 KOG4521 Nuclear pore complex, 23.7 1.7E+03 0.036 28.8 15.5 84 302-387 985-1071(1480)
447 PRK14956 DNA polymerase III su 23.7 8.4E+02 0.018 28.2 11.7 92 187-302 194-285 (484)
448 PF00244 14-3-3: 14-3-3 protei 23.1 8.3E+02 0.018 25.1 12.4 34 771-804 13-46 (236)
449 COG5108 RPO41 Mitochondrial DN 22.8 4.7E+02 0.01 30.8 9.3 90 340-431 33-130 (1117)
450 PRK10564 maltose regulon perip 22.0 1.6E+02 0.0034 31.2 5.1 36 831-866 260-295 (303)
451 PF11663 Toxin_YhaV: Toxin wit 21.9 98 0.0021 28.2 3.1 32 978-1011 105-136 (140)
452 PHA03100 ankyrin repeat protei 21.1 1E+03 0.022 27.4 12.7 265 706-1003 14-311 (480)
453 KOG1498 26S proteasome regulat 21.0 1.2E+03 0.025 26.0 17.2 21 341-361 137-157 (439)
454 PRK14956 DNA polymerase III su 20.6 1.3E+03 0.028 26.7 12.4 36 932-967 247-282 (484)
455 PHA02537 M terminase endonucle 20.5 8.5E+02 0.019 24.9 9.8 32 801-832 90-121 (230)
456 PRK09857 putative transposase; 20.3 5E+02 0.011 27.7 8.7 57 945-1002 218-274 (292)
457 TIGR02397 dnaX_nterm DNA polym 20.1 1.2E+03 0.025 25.6 13.7 28 235-263 249-276 (355)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-82 Score=784.67 Aligned_cols=678 Identities=17% Similarity=0.193 Sum_probs=645.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 192 CHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVL 271 (1038)
Q Consensus 192 ~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 271 (1038)
.++..++|.++..|.+.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+..+.|..++..+.+.|..++...+|.|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 001645 272 VRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRI 351 (1038)
Q Consensus 272 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 351 (1038)
+.+|++.|+.+.|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|...|+.||..||+.++++++..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 9999999999999999999964 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 001645 352 REALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMK 431 (1038)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (1038)
..+.+++..|.+.|+.||..+++.||.+|++.|++++|.++|++|...+. .+||++|.+|++.|++++|+++|.+|.
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~---~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC---ISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCc---chhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986544 569999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 001645 432 ESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKS 511 (1038)
Q Consensus 432 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 511 (1038)
..|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. ||..+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974 78999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCC
Q 001645 512 YSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQ 591 (1038)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1038)
|+.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|+.+.+.++.+..
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~--------------------- 415 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA--------------------- 415 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH---------------------
Confidence 99999999999999999999999999999999999999999999999988776443211
Q ss_pred CCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHH
Q 001645 592 GPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAAL 671 (1038)
Q Consensus 592 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 671 (1038)
T Consensus 416 -------------------------------------------------------------------------------- 415 (857)
T PLN03077 416 -------------------------------------------------------------------------------- 415 (857)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 001645 672 HFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKAN 751 (1038)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 751 (1038)
...|+.++..+||.++.+|++.|++++|.++|++|.+ +|..+|+.||.+|++.|+.++|+.+|++|..
T Consensus 416 -------~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~- 483 (857)
T PLN03077 416 -------ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL- 483 (857)
T ss_pred -------HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 1235678889999999999999999999999999975 4888999999999999999999999999986
Q ss_pred CCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchH
Q 001645 752 GCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSY 831 (1038)
Q Consensus 752 g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 831 (1038)
++.||..||+.++.+|+ +.|.++.+.+++..+.+.|+.+|..++++++++|+++|++++|.++|+.+ .++..+|
T Consensus 484 ~~~pd~~t~~~lL~a~~--~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~ 557 (857)
T PLN03077 484 TLKPNSVTLIAALSACA--RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSW 557 (857)
T ss_pred CCCCCHhHHHHHHHHHh--hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhH
Confidence 59999999999999999 45799999999999999999999999999999999999999999999987 4567899
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCccHhhHHHHHHHHHh
Q 001645 832 SLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMK-QAGIYPTVHVYTSFVVHFFR 910 (1038)
Q Consensus 832 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~y~~li~~~~~ 910 (1038)
|++|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999 68999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001645 911 EKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALEL 990 (1038)
Q Consensus 911 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l 990 (1038)
.|++++|.+++++|. ++||..+|++|+.+|...|+.+.|+...+++.+..|. +...|..|.+.|+..|+|++|.++
T Consensus 638 ~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 638 AGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred CCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHH
Confidence 999999999999994 7999999999999999999999999999999998777 888999999999999999999999
Q ss_pred HHHHHHCCCCCCh
Q 001645 991 LSEMTESGIVPSN 1003 (1038)
Q Consensus 991 ~~~m~~~g~~p~~ 1003 (1038)
.+.|++.|++++.
T Consensus 714 r~~M~~~g~~k~~ 726 (857)
T PLN03077 714 RKTMRENGLTVDP 726 (857)
T ss_pred HHHHHHcCCCCCC
Confidence 9999999999754
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-74 Score=717.57 Aligned_cols=661 Identities=15% Similarity=0.193 Sum_probs=624.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIV 306 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 306 (1038)
+++..+++.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.++.+..++..+.+.+..++..++|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001645 307 MNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRI 386 (1038)
Q Consensus 307 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 386 (1038)
+.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999995 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001645 387 SDALEIVDIMMRRNLV-DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEM 465 (1038)
Q Consensus 387 ~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m 465 (1038)
+.+.+++..|.+.+.. +..+||.+|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.++|.+|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999998876 67899999999999999999999999997 579999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 466 LKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDE 545 (1038)
Q Consensus 466 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 545 (1038)
.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 47889
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHH
Q 001645 546 IFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLH 625 (1038)
Q Consensus 546 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1038)
+|+.++.+|++.|+.+.+.++.+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~--------------------------------------------------------- 378 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYA--------------------------------------------------------- 378 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHH---------------------------------------------------------
Confidence 99999999999999887664321
Q ss_pred HHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhh
Q 001645 626 EICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKH 705 (1038)
Q Consensus 626 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 705 (1038)
.+ ...++.||..+|+.++.+|++.|+++.
T Consensus 379 --------------------------------------------------~M-~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 379 --------------------------------------------------LM-EQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred --------------------------------------------------HH-HHhCCCCCceeHHHHHHHHhccchHHH
Confidence 11 124677999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001645 706 MRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEM 785 (1038)
Q Consensus 706 a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m 785 (1038)
|.++++.|.+.|+.|+..+||.||.+|++.|++++|.++|++|.+ +|..+|+.+|.+++ +.++.++|+.+|++|
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~--~~g~~~eA~~lf~~m 481 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLR--LNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH--HCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999974 78999999999999 567999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH
Q 001645 786 VNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTV-PLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEF 864 (1038)
Q Consensus 786 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 864 (1038)
.. ++.||..+|+.++.+|++.|+++.+.+++..+.+.|... ...+|+|+++|+++|++++|.++|+++ .||..
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~ 555 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChh
Confidence 86 599999999999999999999999999999999999864 578999999999999999999999987 58999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMR-QEGCEPTVVTYTALIQGF 943 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~li~~~ 943 (1038)
+||+||.+|++.|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|++|. +.|+.|+..+|++++++|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 679999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHhccCChhhh
Q 001645 944 ANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS-NINFRTIFFGLNREDNLYQI 1022 (1038)
Q Consensus 944 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~~ 1022 (1038)
++.|++++|.+++++|. ..||..+|++|+.+|...|+.+.|....+++.+ +.|+ ...|..+.+.|...|+++++
T Consensus 636 ~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 636 GRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHH
Confidence 99999999999999983 789999999999999999999999999888886 5674 56677777899999999984
Q ss_pred hc
Q 001645 1023 TK 1024 (1038)
Q Consensus 1023 ~~ 1024 (1038)
.+
T Consensus 711 ~~ 712 (857)
T PLN03077 711 AR 712 (857)
T ss_pred HH
Confidence 43
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-65 Score=616.35 Aligned_cols=546 Identities=15% Similarity=0.207 Sum_probs=408.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGF-EPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKI 305 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 305 (1038)
.++...|..++..+++.|++++|+++|+.|.+.|+ .++..+++.++.+|++.|.+++|.++|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 44566666666667777777777777777776663 45566666667777777777777777766643 66777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001645 306 VMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGR 385 (1038)
Q Consensus 306 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 385 (1038)
+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001645 386 ISDALEIVDIMMRRNLV-DGKIYGIIIGGYLRKNDLSKALVQFERMKE--SGYLPMASTYTELMQHLFKLNEYKKGCELY 462 (1038)
Q Consensus 386 ~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~ 462 (1038)
+++|.++|++|...+.. +..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777666654 456677777777777777777777777765 467778888888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001645 463 NEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVI 542 (1038)
Q Consensus 463 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 542 (1038)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88888777788888888888888888888888888888877888888888888888888888888888888877766655
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChh
Q 001645 543 GDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQ 622 (1038)
Q Consensus 543 ~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1038)
+..+|+
T Consensus 683 d~~tyn-------------------------------------------------------------------------- 688 (1060)
T PLN03218 683 GTVSYS-------------------------------------------------------------------------- 688 (1060)
T ss_pred CHHHHH--------------------------------------------------------------------------
Confidence 544444
Q ss_pred hHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCC
Q 001645 623 DLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKD 702 (1038)
Q Consensus 623 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 702 (1038)
.+|.+|++.|+
T Consensus 689 ---------------------------------------------------------------------sLI~ay~k~G~ 699 (1060)
T PLN03218 689 ---------------------------------------------------------------------SLMGACSNAKN 699 (1060)
T ss_pred ---------------------------------------------------------------------HHHHHHHhCCC
Confidence 44444445555
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHH
Q 001645 703 FKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIF 782 (1038)
Q Consensus 703 ~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~ 782 (1038)
+++|.++|++|...|+.||..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+ +.|++++|.++|
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~--k~G~le~A~~l~ 777 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE--RKDDADVGLDLL 777 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 666777888888888888888888888888888888888888888888888888888888888877 456888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC
Q 001645 783 QEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD 862 (1038)
Q Consensus 783 ~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 862 (1038)
.+|.+.|+.||..+|++++.+|.+ +++++..+.+.+...+.. ......+..++|+.+|++|.+.|+.||
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g---------~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSG---------RPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhcc---------ccccccchHHHHHHHHHHHHHCCCCCC
Confidence 888888888888888888866542 455555444333322111 111112334679999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001645 863 EFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVV 934 (1038)
Q Consensus 863 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 934 (1038)
..||+.++.++++.+..+.+..+++.|...+..|+..+|++||++|++. .++|..+|++|...|+.|+..
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999889999999999999999888899999999999998543 478999999999999999886
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6e-65 Score=614.18 Aligned_cols=524 Identities=17% Similarity=0.278 Sum_probs=459.8
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHH
Q 001645 331 QIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEI-SMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGI 409 (1038)
Q Consensus 331 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 409 (1038)
..++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|++.|.+++|.++|+.|.. ++..+|+.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~ 442 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNM 442 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHH
Confidence 345666788888888888888888888888888885 45677778888888888888888888888875 56778888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001645 410 IIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDN 489 (1038)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 489 (1038)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999989999999999999988888899999999999999999999999999999888888899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 001645 490 LSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQA--SKIVIGDEIFHWVISCMEKKGEMESVEKVK 567 (1038)
Q Consensus 490 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~ 567 (1038)
+++|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~-------------------------- 576 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID-------------------------- 576 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC--------------------------
Confidence 999999999998888889999999999999999999999999988865 3333
Q ss_pred HHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhc
Q 001645 568 RMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKC 647 (1038)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 647 (1038)
T Consensus 577 -------------------------------------------------------------------------------- 576 (1060)
T PLN03218 577 -------------------------------------------------------------------------------- 576 (1060)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 001645 648 AVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTI 727 (1038)
Q Consensus 648 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~ 727 (1038)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|++
T Consensus 577 -------------------------------------PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 577 -------------------------------------PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred -------------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 4455666666666777778888899999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001645 728 MMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEV 807 (1038)
Q Consensus 728 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~ 807 (1038)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++ +.|++++|.++|++|.+.|+.||..+|+++|.+|+++
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~--k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG--HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988 4578999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC-CcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 808 GMLQLAKSCMDVLRKVGFT-VPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKV 886 (1038)
Q Consensus 808 g~~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 886 (1038)
|++++|.++|+.|.+.+.. +..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999887765 457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCccHhhHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001645 887 ETMKQAGIYPTVHVYTSFVVHFFR----E-------------------KQVGRALEIFERMRQEGCEPTVVTYTALIQGF 943 (1038)
Q Consensus 887 ~~m~~~g~~p~~~~y~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 943 (1038)
++|.+.|+.||..+|++|+..|.+ + +..++|..+|++|++.|+.||..||+.++.++
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 999999999999999999876532 1 23468999999999999999999999999888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 001645 944 ANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNI 1004 (1038)
Q Consensus 944 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 1004 (1038)
++.+..+.+..+++.|...+..|+..+|+++++++++. .++|+.++++|...|+.|+..
T Consensus 858 ~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999888889999999999998543 378999999999999999875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.4e-59 Score=562.80 Aligned_cols=471 Identities=18% Similarity=0.239 Sum_probs=356.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001645 302 LYKIVMNCAAKLGDVDAVLSIADDMVRIS-QIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGL 380 (1038)
Q Consensus 302 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 380 (1038)
+|+.+|.++.+.|++++|.++|+.|...+ ..||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.|+.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 33333334444444444444444443322 33455555555555555566666666666666667777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 001645 381 CIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCE 460 (1038)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 460 (1038)
++.|++++|.++|++|.+. +..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|.+.|..+.+.+
T Consensus 169 ~k~g~~~~A~~lf~~m~~~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPER---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred hcCCCHHHHHHHHhcCCCC---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 7777777777777777653 3445888888888888888888888888888888999999999999988888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001645 461 LYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKI 540 (1038)
Q Consensus 461 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (1038)
++..+.+.|+.||..+|++|+++|+++|++++|.++|++|.. +|..+||.||.+|++.|+.++|+++|++|.+
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--- 318 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD--- 318 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---
Confidence 888888888888888888888888888888888888877753 3555555555555555544444444433322
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCC
Q 001645 541 VIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYC 620 (1038)
Q Consensus 541 ~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1038)
T Consensus 319 -------------------------------------------------------------------------------- 318 (697)
T PLN03081 319 -------------------------------------------------------------------------------- 318 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 001645 621 EQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRG 700 (1038)
Q Consensus 621 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 700 (1038)
T Consensus 319 -------------------------------------------------------------------------------- 318 (697)
T PLN03081 319 -------------------------------------------------------------------------------- 318 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHH
Q 001645 701 KDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIK 780 (1038)
Q Consensus 701 ~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~ 780 (1038)
.|+.||..||++++.+|++.|.+++|.+++.
T Consensus 319 ---------------~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~---------------------------------- 349 (697)
T PLN03081 319 ---------------SGVSIDQFTFSIMIRIFSRLALLEHAKQAHA---------------------------------- 349 (697)
T ss_pred ---------------cCCCCCHHHHHHHHHHHHhccchHHHHHHHH----------------------------------
Confidence 2233444555555555555555555555544
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 001645 781 IFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSK 860 (1038)
Q Consensus 781 ~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 860 (1038)
.|.+.|+.||..++++++++|+++|++++|.++|+.|.+ ++..+||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 350 ---~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 350 ---GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred ---HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444555555555555556666666666666666665543 24589999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001645 861 LDEFVFGSLIHGLVQRGQIEEALAKVETMKQ-AGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTAL 939 (1038)
Q Consensus 861 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 939 (1038)
||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| ++.||..+|++|
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~L 500 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAAL 500 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 9999999999999999999999999999986 799999999999999999999999999999877 578999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 001645 940 IQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVP 1001 (1038)
Q Consensus 940 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p 1001 (1038)
+.+|...|+++.|..+++++.+.++. +..+|+.|+++|++.|+|++|.+++++|.+.|+++
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999877665 67899999999999999999999999999999863
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.8e-58 Score=553.86 Aligned_cols=474 Identities=17% Similarity=0.175 Sum_probs=408.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 193 HATETYNTMLTIAGEAKELELLEELEREMEINS-CAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVL 271 (1038)
Q Consensus 193 ~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 271 (1038)
.+..+|+.+|..+.+.|++++|.++|+.|...+ +.||..+|+.++.+|++.++++.|..++..|.+.|+.||..+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999998764 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 001645 272 VRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRI 351 (1038)
Q Consensus 272 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 351 (1038)
+.+|++.|+++.|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|..|+..+|+.++.++++.|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999964 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 001645 352 REALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMK 431 (1038)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (1038)
+.+.+++..+.+.|+.||..+|+.||++|++.|++++|.++|+.|... +..+||.||.+|++.|+.++|+++|++|.
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999765 45679999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 001645 432 ESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKS 511 (1038)
Q Consensus 432 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 511 (1038)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|.+ ||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 68999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCC
Q 001645 512 YSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQ 591 (1038)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1038)
||.||.+|++.|+.++|+++|++|.+.|+.||..||..++.+|++
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----------------------------------- 438 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY----------------------------------- 438 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-----------------------------------
Confidence 999999999999999999999999888777766666555555443
Q ss_pred CCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHH
Q 001645 592 GPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAAL 671 (1038)
Q Consensus 592 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 671 (1038)
T Consensus 439 -------------------------------------------------------------------------------- 438 (697)
T PLN03081 439 -------------------------------------------------------------------------------- 438 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001645 672 HFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRR-NGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKA 750 (1038)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 750 (1038)
.|++++|.++|+.|.+ .|+.|+..+|+.|+.+|++.|++++|.+++++|
T Consensus 439 ----------------------------~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-- 488 (697)
T PLN03081 439 ----------------------------SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-- 488 (697)
T ss_pred ----------------------------CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence 3344556667777754 467777777777777777777777777666543
Q ss_pred cCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcch
Q 001645 751 NGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLS 830 (1038)
Q Consensus 751 ~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 830 (1038)
++.|+..+|+.++.+ |+..|+++.|..+++.+.+.++.+..+
T Consensus 489 -~~~p~~~~~~~Ll~a-------------------------------------~~~~g~~~~a~~~~~~l~~~~p~~~~~ 530 (697)
T PLN03081 489 -PFKPTVNMWAALLTA-------------------------------------CRIHKNLELGRLAAEKLYGMGPEKLNN 530 (697)
T ss_pred -CCCCCHHHHHHHHHH-------------------------------------HHHcCCcHHHHHHHHHHhCCCCCCCcc
Confidence 334555555555444 444455555555555554444445567
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 001645 831 YSLYIRALCRAGELEEALALLDEVKEERSK 860 (1038)
Q Consensus 831 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 860 (1038)
|+.|+++|++.|++++|.+++++|.+.|++
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 888888888888888888888888888875
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-35 Score=378.54 Aligned_cols=782 Identities=12% Similarity=0.049 Sum_probs=573.2
Q ss_pred cCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 173 KVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLV 252 (1038)
Q Consensus 173 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (1038)
..++.|...+.-... .........+..+..++...|++++|...|+.+.+.. +.+..++..+...+...|++++|..+
T Consensus 104 g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (899)
T TIGR02917 104 GKFQQVLDELPGKTL-LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARAL 181 (899)
T ss_pred CCHHHHHHhhccccc-CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHH
Confidence 345556665543311 1222345667777777788888888888888887665 55677788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 001645 253 FEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQI 332 (1038)
Q Consensus 253 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 332 (1038)
++.+.+.. +++...+..+...+...|+++.|...|++..+.+. .+..++..++..+...|++++|...++.+.+....
T Consensus 182 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (899)
T TIGR02917 182 IDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN 259 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88887654 55667777788888888888888888888876543 35667777888888888888888888888775432
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHH
Q 001645 333 PERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIG 412 (1038)
Q Consensus 333 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 412 (1038)
+...+......+...|++++|...++++.+.+.. +...+..+...+...|++++|...|+.+.+..+.+...+..+..
T Consensus 260 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 337 (899)
T TIGR02917 260 -SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS 337 (899)
T ss_pred -CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 1222333344455678888888888877765543 23344455566777888888888888887777766667777777
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 413 GYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSE 492 (1038)
Q Consensus 413 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 492 (1038)
.+...|++++|...+..+.... +.+...+..+...+...|++++|.++|+.+.+.. +.+...+..+...+...|++++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHH
Confidence 8888888888888888776653 3456677777777888888888888888877653 2355667777777778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 001645 493 AWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGI 572 (1038)
Q Consensus 493 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~ 572 (1038)
|...|+.+...... ....+..++..+.+.|++++|+++++++... .+.+..++..+...+...|+.+.+....+..-.
T Consensus 416 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 416 AIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 88888877765422 3344556667777788888888888877653 334556677777777777777776654321100
Q ss_pred hcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhh----cc
Q 001645 573 CKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEK----CA 648 (1038)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~ 648 (1038)
..+ ........+..+......+......++. .+
T Consensus 494 --~~~-----------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 530 (899)
T TIGR02917 494 --IEP-----------------------------------------DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP 530 (899)
T ss_pred --hCC-----------------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 000 0001111222222222333222222111 11
Q ss_pred CCCCHHHHHHHH--HccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHH
Q 001645 649 VQYTPELVLEIL--HNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWT 726 (1038)
Q Consensus 649 ~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~ 726 (1038)
. +......+. .........++..+...... .+.+...+..++..+...|++++|..+++.+.+..+. +..+|.
T Consensus 531 ~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 605 (899)
T TIGR02917 531 K--NLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWL 605 (899)
T ss_pred C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHH
Confidence 1 111111111 11122334455555444322 3445677888999999999999999999999876544 788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001645 727 IMMMQYGRAGLTEMAMRVFEDMKANGCNPS-GSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLC 805 (1038)
Q Consensus 727 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 805 (1038)
.+...|.+.|++++|+..|+.+.+.. |+ ...+..+...+. ..+++++|...++++.+.. ..+..++..++..+.
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYA--VMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999998753 44 344444444444 4569999999999998864 335778889999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAK 885 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 885 (1038)
..|++++|.++++.+.+..+..+..+..+...+...|++++|++.|+++.+.+ |+..++..+..++.+.|++++|...
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999864 5557888899999999999999999
Q ss_pred HHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 886 VETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 886 ~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
++.+.+.. +.+...++.+...|...|+.++|.+.|+++.+.. +++...++.+...+.+.|+ .+|+.+++++.+..+.
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 99998764 6778899999999999999999999999999864 5678899999999999999 8899999999998776
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCChhhhhc
Q 001645 966 PDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQITK 1024 (1038)
Q Consensus 966 ~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~~~~ 1024 (1038)
++.++..++.+|...|++++|.+.++++.+.+.. +..++..+...+.+.|+.+++.+
T Consensus 836 -~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 836 -IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 7888999999999999999999999999986543 88899999999999999999654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.2e-35 Score=372.82 Aligned_cols=753 Identities=13% Similarity=0.031 Sum_probs=536.5
Q ss_pred cCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 173 KVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLV 252 (1038)
Q Consensus 173 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (1038)
..++.|...|+-+....+ .+...+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...
T Consensus 139 ~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 215 (899)
T TIGR02917 139 GQLELAQKSYEQALAIDP--RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAA 215 (899)
T ss_pred CCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 345667777776643322 345566777777777888888888888777654 66777777777777788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 001645 253 FEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQI 332 (1038)
Q Consensus 253 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 332 (1038)
|+...+.. +.+..++..+...+...|++++|...++.+.+.... +...+......+...|++++|...|+++.+.+
T Consensus 216 ~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-- 291 (899)
T TIGR02917 216 YRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSA-- 291 (899)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 88777654 445667777777777888888888888777765432 23333344445566777777777777776644
Q ss_pred CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHH
Q 001645 333 PE-RDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIII 411 (1038)
Q Consensus 333 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 411 (1038)
|+ ...+..+...+...|++++|...++.+.+.... +...+..+...+.+.|++++|...++.+...++.+...+..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 370 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLG 370 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 32 223344455666777777777777777665433 4556666777777777777777777777776666666777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 001645 412 GGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLS 491 (1038)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 491 (1038)
..+.+.|++++|.++|+++.... +.+...+..+...+...|++++|.+.+..+.+.... .......++..+.+.|+++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHH
Confidence 77777777777777777776543 224555666666677777777777777777665422 2334455666777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH-Hh
Q 001645 492 EAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKR-MQ 570 (1038)
Q Consensus 492 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~-~~ 570 (1038)
+|..+++.+.... +++..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+.+.+.+..+ +.
T Consensus 449 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777776543 3456667777777777777777777777776542 2233445556666666777666554321 11
Q ss_pred hhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHH----Hhh
Q 001645 571 GICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQES----LEK 646 (1038)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~ 646 (1038)
... + .+......+..++.....+...... ++.
T Consensus 527 ~~~---~-----------------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 527 TID---P-----------------------------------------KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HhC---c-----------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 000 0 0001111222222222222221111 111
Q ss_pred ccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHH
Q 001645 647 CAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWT 726 (1038)
Q Consensus 647 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~ 726 (1038)
.+.....................++..+.... ...+.+...|..+...+...|++++|...|+.+.+..+. ++..+.
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 639 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAA--DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALL 639 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHH
Confidence 22222211111111122233345555555443 234567789999999999999999999999999887654 778899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001645 727 IMMMQYGRAGLTEMAMRVFEDMKANGCNPS-GSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLC 805 (1038)
Q Consensus 727 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 805 (1038)
.+...|.+.|++++|...|+++.+. .|+ ..++..+...+. ..|++++|..+++.+.+.. ..+...+..+..++.
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLL--AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 9999999999999999999999875 344 555666666555 4579999999999998876 346677888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAK 885 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 885 (1038)
..|++++|.+.+..+....+.+ .++..++..+.+.|++++|.+.++++.+. .+.+...+..+...|...|+.++|...
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999988766 56778899999999999999999999986 356788999999999999999999999
Q ss_pred HHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 886 VETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 886 ~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
|+++.+.+ +++..+++.+...+...|+ .+|+.+++++.+.. +-+..++..+...+.+.|++++|.++++++.+.++.
T Consensus 793 ~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999865 6788999999999999999 88999999998752 335677888999999999999999999999999887
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 966 PDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 966 ~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
++.++..++.+|.+.|++++|.+++++|+
T Consensus 870 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 870 -AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999999999986
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.3e-23 Score=267.50 Aligned_cols=648 Identities=13% Similarity=0.071 Sum_probs=421.3
Q ss_pred cCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH----------------HHH
Q 001645 173 KVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTW----------------TIL 236 (1038)
Q Consensus 173 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~----------------~~l 236 (1038)
.+.+.|.+.+.-+..... -++..+..++.++.+.|+.++|.+.++.+.+.. |.+...+ ..+
T Consensus 42 ~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred CChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHH
Confidence 445667666665543221 257778888888999999999999999998875 5454443 233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCC
Q 001645 237 VSLYGKAKLIGKALLVFEKMRKYGFEPDAV-AYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGD 315 (1038)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 315 (1038)
...+.+.|++++|+..|+.+.+.+ +|+.. ....+.......|++++|.+.|+++.+.... +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCC
Confidence 446788899999999999988654 34432 1111122223468999999999999887433 66778888888999999
Q ss_pred hhHHHHHHHHHHHcCCCCC--hhh-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 316 VDAVLSIADDMVRISQIPE--RDA-----------------YGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETL 376 (1038)
Q Consensus 316 ~~~a~~~~~~m~~~~~~p~--~~~-----------------~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 376 (1038)
.++|+..++++........ ... +...+..+-.....+.|...+.++......|+... ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~ 275 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQ 275 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHH
Confidence 9999999998865321100 000 11111111122234455555555544433333322 233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHH------------
Q 001645 377 VKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLP-MASTYT------------ 443 (1038)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~------------ 443 (1038)
...+...|++++|...|++..+.++.+..++..+...|.+.|++++|+..|++..+..... ....+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5567778889999999988888888888888888888888999999999888887653221 111111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001645 444 ELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVS 523 (1038)
Q Consensus 444 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 523 (1038)
.....+.+.|++++|...++++++.. +.+...+..+...|...|++++|.+.|++..+... .+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hc
Confidence 12334567788888888888887763 23556667777888888888888888888776532 23455555555553 45
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccc
Q 001645 524 RTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEME 603 (1038)
Q Consensus 524 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 603 (1038)
+.++|+.+++.+...... .......
T Consensus 433 ~~~~A~~~l~~l~~~~~~----~~~~~~~--------------------------------------------------- 457 (1157)
T PRK11447 433 SPEKALAFIASLSASQRR----SIDDIER--------------------------------------------------- 457 (1157)
T ss_pred CHHHHHHHHHhCCHHHHH----HHHHHHH---------------------------------------------------
Confidence 677777776654321000 0000000
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCC
Q 001645 604 RKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADY 683 (1038)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 683 (1038)
T Consensus 458 -------------------------------------------------------------------------------- 457 (1157)
T PRK11447 458 -------------------------------------------------------------------------------- 457 (1157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 001645 684 SHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYL 763 (1038)
Q Consensus 684 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 763 (1038)
.-....+..+...+...|++++|...|++..+..+. ++..+..+...|.+.|++++|...|+++.+. .|+.......
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a 534 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYA 534 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHH
Confidence 000123445566777889999999999999887765 7778888999999999999999999998875 4544333333
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCC
Q 001645 764 IISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGE 843 (1038)
Q Consensus 764 l~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 843 (1038)
...+.. ..++.++|+..++.+......++...+.. .+.. ..+..+...+...|+
T Consensus 535 ~al~l~-~~~~~~~Al~~l~~l~~~~~~~~~~~l~~-------------------~l~~------~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 535 YGLYLS-GSDRDRAALAHLNTLPRAQWNSNIQELAQ-------------------RLQS------DQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHH-hCCCHHHHHHHHHhCCchhcChhHHHHHH-------------------HHhh------hHHHHHHHHHHHCCC
Confidence 322222 45689999998887654332222111100 0000 012234566677788
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 844 LEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFER 923 (1038)
Q Consensus 844 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 923 (1038)
.++|+++++. .+.+...+..+...+.+.|+.++|+..|++..+.. +.+...+..++..|...|+.++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888877762 23455566677777888888888888888877653 44567777888888888888888888887
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHH-H
Q 001645 924 MRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP-----DFRTYSMFIGCLCKVGKSEEALELLSEMT-E 996 (1038)
Q Consensus 924 m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~l~~~m~-~ 996 (1038)
+.+. .| +...+..+..++...|++++|.++++++....+.. +...+..+...+...|++++|++.|++.. .
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7653 34 34556667777778888888888888887654331 22456666777888888888888888765 3
Q ss_pred CCCCC
Q 001645 997 SGIVP 1001 (1038)
Q Consensus 997 ~g~~p 1001 (1038)
.|+.|
T Consensus 741 ~~~~~ 745 (1157)
T PRK11447 741 SGITP 745 (1157)
T ss_pred cCCCC
Confidence 34544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3.5e-23 Score=263.41 Aligned_cols=646 Identities=12% Similarity=0.038 Sum_probs=435.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---------
Q 001645 198 YNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAY--------- 268 (1038)
Q Consensus 198 ~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------- 268 (1038)
.-..++..-..++.+.|.+.++++.... +.++.++..++..+.+.|+.++|...+++..+.. +.+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhc
Confidence 4556667778899999999999998775 7789999999999999999999999999999874 2232222
Q ss_pred -------HHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHH
Q 001645 269 -------KVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLS-LYKIVMNCAAKLGDVDAVLSIADDMVRISQIPE-RDAYG 339 (1038)
Q Consensus 269 -------~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~ 339 (1038)
..+...+.+.|++++|.+.|+.+.+.+. |+.. ....+.......|+.++|.+.++++.+.. |+ ...+.
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~ 185 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRN 185 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 2223356677777777777777765432 2221 11111111223467777777777776643 32 33455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHhcc
Q 001645 340 CVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV--DGKIYGIIIGGYLRK 417 (1038)
Q Consensus 340 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 417 (1038)
.+...+...|+.++|++.++++...... +. ..+...+..+...... ....+...+..+-..
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~----------------~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAG-RD----------------AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCc-hH----------------HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 6666666677777777777776543211 00 1111111111111111 112223333333333
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 418 NDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVF 497 (1038)
Q Consensus 418 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 497 (1038)
...+.|...+.++......|+... ......+...|++++|...|++.++.. +.+..++..+...|.+.|++++|...|
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l 326 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQF 326 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344556666655544332333221 123445566788888888888887763 236677777888888888888888888
Q ss_pred HHHHhCCCCC-CHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 001645 498 KCMEDKGIRP-TRKSYSV------------FIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVE 564 (1038)
Q Consensus 498 ~~m~~~g~~p-~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~ 564 (1038)
++..+..... ....|.. ....+.+.|++++|...|++.....
T Consensus 327 ~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~------------------------- 381 (1157)
T PRK11447 327 EKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD------------------------- 381 (1157)
T ss_pred HHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------
Confidence 8877653211 1111211 1234566777777777777765431
Q ss_pred HHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHH
Q 001645 565 KVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESL 644 (1038)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 644 (1038)
T Consensus 382 -------------------------------------------------------------------------------- 381 (1157)
T PRK11447 382 -------------------------------------------------------------------------------- 381 (1157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHH
Q 001645 645 EKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDT 724 (1038)
Q Consensus 645 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ 724 (1038)
+.+...+..+...+...|++++|.+.|++..+..+. +...
T Consensus 382 ---------------------------------------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a 421 (1157)
T PRK11447 382 ---------------------------------------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNA 421 (1157)
T ss_pred ---------------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 122345556677788889999999999999887654 5667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHH
Q 001645 725 WTIMMMQYGRAGLTEMAMRVFEDMKANGCNP--------SGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKEL 796 (1038)
Q Consensus 725 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~ 796 (1038)
+..+...|. .+..++|+.+++.+....... ....+..+...+. ..|++++|+..+++.++.... +...
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~--~~g~~~eA~~~~~~Al~~~P~-~~~~ 497 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE--NQGKWAQAAELQRQRLALDPG-SVWL 497 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 777777774 467899998887654321000 0011122222222 456999999999999987532 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH---------HHH
Q 001645 797 VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEF---------VFG 867 (1038)
Q Consensus 797 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~ 867 (1038)
+..+..+|.+.|++++|...++.+.+..+.++..+..+...+...|+.++|+..++.+......++.. .+.
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHH
Confidence 77889999999999999999999999888877777777777888999999999998865432222221 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 868 SLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG 947 (1038)
Q Consensus 868 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 947 (1038)
.+...+...|+.++|..+++. .+++...+..+...+.+.|++++|++.|++.++.. +.+...+..++..|...|
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 456778899999999999882 35666778889999999999999999999999863 346788899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC---ChhcHHHHHHHHhccCChhhh
Q 001645 948 KVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGI--VP---SNINFRTIFFGLNREDNLYQI 1022 (1038)
Q Consensus 948 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~~ 1022 (1038)
++++|++.++.+.+..+. +..++..+..++...|++++|.++++++....- .| +...++.+...+...|+.++.
T Consensus 652 ~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 652 DLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred CHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999999999998877665 777888899999999999999999999986421 12 234566667778888888874
Q ss_pred h
Q 001645 1023 T 1023 (1038)
Q Consensus 1023 ~ 1023 (1038)
.
T Consensus 731 ~ 731 (1157)
T PRK11447 731 L 731 (1157)
T ss_pred H
Confidence 3
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.6e-20 Score=227.32 Aligned_cols=632 Identities=10% Similarity=0.019 Sum_probs=330.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 001645 207 EAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALE 286 (1038)
Q Consensus 207 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 286 (1038)
..|++++|...|+...+.. |.+..++..|...|.+.|+.++|+..+++..+. .|+-..|..++..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 3488888888888888766 666788888888888888888888888888876 34433333333333 77888888
Q ss_pred HHHHHHhCCCcCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHHH
Q 001645 287 FYKEMAQKEMVLDLSLYKIVMNC--------AAKLGDVDAVLSIADDMVRISQIPERDAYGCV-LKSFCVSMRIREALEF 357 (1038)
Q Consensus 287 ~~~~m~~~~~~p~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~ 357 (1038)
+|+++.+.... +..++..+... |.+. +++.+.++ .......|+..+.... .+.|.+.|++++|+++
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 88888776432 34455444444 4444 44444444 3333334444444444 7888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-
Q 001645 358 IRNLKSKEISMDRDHFETLVKGLCI-AGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGY- 435 (1038)
Q Consensus 358 ~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 435 (1038)
++++.+.++. +......|...|.. .++ +++..+++...+ .+...+..++..|.+.|+.++|.++++++...-.
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 8888887655 45556666667777 366 777666443111 3566788888888888888888888887765422
Q ss_pred CCCHHHHHHHH------------------------------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 001645 436 LPMASTYTELM------------------------------QHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGH- 484 (1038)
Q Consensus 436 ~p~~~t~~~ll------------------------------~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~- 484 (1038)
.|...++..++ ..+.+.++++.+.++. .+.|..... .+..+
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~~~ 351 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERYAV 351 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHHhh
Confidence 24444433332 2222333333222221 112222211 11111
Q ss_pred -HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChH
Q 001645 485 -VRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQAS--KIVIGDEIFHWVISCMEKKGEME 561 (1038)
Q Consensus 485 -~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~ 561 (1038)
...+...++...+..|..... -+.....-+.-...+.|+.++|..+|++.... ...++......++..+.+.+..+
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 112334444444444433210 12222222223344555566666666555431 11122223334444444443322
Q ss_pred HHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHH
Q 001645 562 SVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQ 641 (1038)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 641 (1038)
...+...+
T Consensus 431 ~~~~~~~l------------------------------------------------------------------------ 438 (987)
T PRK09782 431 TPAKVAIL------------------------------------------------------------------------ 438 (987)
T ss_pred chHHHHHh------------------------------------------------------------------------
Confidence 22111100
Q ss_pred HHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHH---HHHHHHHHcCC
Q 001645 642 ESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMR---NLFYEMRRNGY 718 (1038)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~l~~~m~~~~~ 718 (1038)
.+.....+. +.-.+.+..+. ..+.......
T Consensus 439 ------------------~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~al~~~- 471 (987)
T PRK09782 439 ------------------SKPLPLAEQ----------------------------RQWQSQLPGIADNCPAIVRLLGDM- 471 (987)
T ss_pred ------------------ccccccchh----------------------------HHHHhhhhhhhhhHHHHHHhcccC-
Confidence 000000000 00001111111 1111111111
Q ss_pred CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHH
Q 001645 719 LI--TPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKEL 796 (1038)
Q Consensus 719 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~ 796 (1038)
++ +...|..+..++.. ++.++|+..|.+.... .|+... .+..++.....|++++|...++++... .|+...
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~--~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a 544 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ--HRAVAYQAYQVEDYATALAAWQKISLH--DMSNED 544 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH--HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHH
Confidence 12 44455555555544 5555566655554443 244322 222222211334666666666655443 222233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001645 797 VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQR 876 (1038)
Q Consensus 797 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 876 (1038)
+..+..++.+.|+.++|...++...+..+.....+..+.......|++++|+..+++..+. .|+...|..+...+.+.
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 3444555566666666666666666555433333333333333446666666666666653 35555666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 877 GQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDV 955 (1038)
Q Consensus 877 g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~ 955 (1038)
|++++|+..+++..+.. +.+...++.+...+...|+.++|++.+++.++. .| +...+..+..++...|++++|+..
T Consensus 623 G~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 623 HNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666666543 334455556666666666666666666666653 33 445566666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 956 FYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 956 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+++..+..+. +..+.....+...+..+++.|.+-+++-.
T Consensus 700 l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 700 ARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 6666665554 44555555666666666666666555544
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=6.1e-19 Score=213.60 Aligned_cols=307 Identities=9% Similarity=-0.020 Sum_probs=226.2
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCC---hHHHHHH---------------
Q 001645 685 HSSATYNMAIKTAGRGKDFKHMRNLFYEMRRN--GYLITPDTWTIMMMQYGRAGL---TEMAMRV--------------- 744 (1038)
Q Consensus 685 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~--~~~~~~~~~~~li~~~~~~g~---~~~A~~~--------------- 744 (1038)
.+.....-+.-...+.|+.++|..+|+..... .-..+......++..|.+.+. ..++..+
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 34455555555667889999999999888652 122355566678888887766 3333333
Q ss_pred -------HHHHHHc-CCCCC--hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 745 -------FEDMKAN-GCNPS--GSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAK 814 (1038)
Q Consensus 745 -------~~~m~~~-g~~p~--~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 814 (1038)
+...... +..|+ .......+..+.. . ++.++|...+.+..... |+......+...+...|++++|.
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~-~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR-D-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH-h-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHH
Confidence 1111111 22244 3332233333332 3 58888999888877754 56544444555667999999999
Q ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 815 SCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI 894 (1038)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 894 (1038)
..++.+....+. ...+..+...+.+.|+.++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 530 ~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-- 605 (987)
T PRK09782 530 AAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-- 605 (987)
T ss_pred HHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 999998665433 4456777888999999999999999998863 223333334444555669999999999999875
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001645 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMF 974 (1038)
Q Consensus 895 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 974 (1038)
.|+...|..+...+.+.|+.++|+..+++..+.. +.+...++.+..++...|+.++|+..+++..+..|. ++..+..+
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nL 683 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQL 683 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 5678889999999999999999999999999863 335677888889999999999999999999999887 88999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 001645 975 IGCLCKVGKSEEALELLSEMTESGIVPSN 1003 (1038)
Q Consensus 975 ~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 1003 (1038)
..+|...|++++|+..+++..+ +.|+.
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 9999999999999999999986 45643
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.3e-17 Score=187.54 Aligned_cols=661 Identities=13% Similarity=0.096 Sum_probs=406.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC-H--HHHHHHHHHHHhcC-----------CHHHHHHHHHHH
Q 001645 195 TETYNTMLTIAGEAKELELLEELEREMEINS----CAKN-I--KTWTILVSLYGKAK-----------LIGKALLVFEKM 256 (1038)
Q Consensus 195 ~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~----~~~~-~--~~~~~li~~~~~~g-----------~~~~A~~~~~~m 256 (1038)
..+|..+...|...|..++...+++.-.... -.+. . ..++.+...|+..+ ....|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 4567788888899999999999988776210 0111 1 12233333332221 233444555544
Q ss_pred HhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCC
Q 001645 257 RKYGF-EPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNC--AAKLGDVDAVLSIADDMVRISQIP 333 (1038)
Q Consensus 257 ~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p 333 (1038)
..... .+....+...........+++.|...|....+.. ++|+- ..+..+ ....+++..|+.+|+........-
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 43221 2222222222222222233577888887777653 22332 334444 345678888888888876654321
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCChhhHHHH
Q 001645 334 ERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIA---GRISDALEIVDIMMRRNLVDGKIYGII 410 (1038)
Q Consensus 334 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l 410 (1038)
-......+-.+|.+.|+.+.|+..|.+..+.++. ++.++-.|...-... ..+..+..++...-..+..++.+.+.|
T Consensus 198 ~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~L 276 (1018)
T KOG2002|consen 198 KADVRIGIGHCFWKLGMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHL 276 (1018)
T ss_pred CCCccchhhhHHHhccchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 2222233345666788888888888888776542 333333333222222 345667777777767777777788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001645 411 IGGYLRKNDLSKALVQFERMKESGYL--PMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQD 488 (1038)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 488 (1038)
...|.-.|++..++.+...+...... .-...|-.+.+++-..|+++.|...|.+..+..-.--...+.-|..+|.+.|
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc
Confidence 88888888888888888777655311 1134466777888888888888888877776532211334455777888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 001645 489 NLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVS----RTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVE 564 (1038)
Q Consensus 489 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~ 564 (1038)
+++.+...|+.+.... +-+..+..+|-..|...+ ..+.|..++.+..+.-
T Consensus 357 dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~------------------------- 410 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT------------------------- 410 (1018)
T ss_pred hHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------------------------
Confidence 8888888888877653 123445555555555543 2344444444433221
Q ss_pred HHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHH
Q 001645 565 KVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESL 644 (1038)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 644 (1038)
T Consensus 411 -------------------------------------------------------------------------------- 410 (1018)
T KOG2002|consen 411 -------------------------------------------------------------------------------- 410 (1018)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHH----HHHHHcCCCC
Q 001645 645 EKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLF----YEMRRNGYLI 720 (1038)
Q Consensus 645 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~----~~m~~~~~~~ 720 (1038)
+.|...|-.+..++...+-+.. ...| +.+...+..+
T Consensus 411 ---------------------------------------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 411 ---------------------------------------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQI 450 (1018)
T ss_pred ---------------------------------------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCC
Confidence 1111222222222222111111 2222 2334445456
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCh-----hhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCC
Q 001645 721 TPDTWTIMMMQYGRAGLTEMAMRVFEDMKAN---GCNPSG-----STYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIP 792 (1038)
Q Consensus 721 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~ 792 (1038)
.+...|.+...+...|.+++|...|+..+.. -..++. .|..+.+..+.. ..++.+.|.++|..+++.. |
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E-~l~~~~~A~e~Yk~Ilkeh--p 527 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE-ELHDTEVAEEMYKSILKEH--P 527 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHC--c
Confidence 7778888888888888888888888877664 122333 233444444443 3457888888888888763 3
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 001645 793 D-KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEER-SKLDEFVFGSLI 870 (1038)
Q Consensus 793 d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li 870 (1038)
. +..|-.+.-+....++..+|...+......+-.+|..|+.+...+.+...+.-|.+-|....+.- ..+|.++.-+|.
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 2 11222222122223567788888888888888888888888888888888888888666655431 226777777777
Q ss_pred HHHHh------------cCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 871 HGLVQ------------RGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTA 938 (1038)
Q Consensus 871 ~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 938 (1038)
+.|.+ .+..++|+++|.+..+.. +-|...-|-+.-.++..|++.+|..+|....+.. .-+..+|-.
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lN 685 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLN 685 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeee
Confidence 75543 345678888888888754 6677888888888888999999999999888764 235567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHH
Q 001645 939 LIQGFANLGKVAEAWDVFYRMKIK-GPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIF 1010 (1038)
Q Consensus 939 li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~ 1010 (1038)
+...|..+|++..|+++|+...+. ...-+......|..++...|.+.+|.+.+.........-..+-|+..+
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 888888999999999999887765 445577788888899999999999888887776533222344555444
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6.6e-17 Score=181.86 Aligned_cols=601 Identities=13% Similarity=0.098 Sum_probs=420.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001645 246 IGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADD 325 (1038)
Q Consensus 246 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 325 (1038)
++.|...|....+.. ++|....-.=.......+++..|+.+|+.........-+.....+..++.+.|+.+.|...|..
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 689999999888764 5555444333334456789999999999976654322223334455778899999999999999
Q ss_pred HHHcCCCCChh-hHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 001645 326 MVRISQIPERD-AYGCVLK---SFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNL 401 (1038)
Q Consensus 326 m~~~~~~p~~~-~~~~ll~---~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 401 (1038)
..+.. |+.+ ++..|-- .+-....+..++.++......... |+...+.|...|.-.|++..+..+...+.....
T Consensus 225 alqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 225 ALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 88844 4222 2222211 111223455677777666655544 788899999999999999999999998887664
Q ss_pred CC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 001645 402 VD---GKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMA--STYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVA 476 (1038)
Q Consensus 402 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~ 476 (1038)
.. ...|.-+..+|-..|++++|..+|.+..... ++. ..+.-+.+.+.+.|+++.+...|+...+.. +.+..+
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 42 3458889999999999999999998776653 443 445567888999999999999999999873 446677
Q ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 001645 477 VTAMVAGHVRQD----NLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVIS 552 (1038)
Q Consensus 477 ~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 552 (1038)
...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+... +...++.+|.....
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d--------------- 441 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALD--------------- 441 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHH---------------
Confidence 778888887775 4567777777766654 23666777665555443 33333555544321
Q ss_pred HHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhc
Q 001645 553 CMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLS 632 (1038)
Q Consensus 553 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 632 (1038)
.++..
T Consensus 442 ~L~~~--------------------------------------------------------------------------- 446 (1018)
T KOG2002|consen 442 ILESK--------------------------------------------------------------------------- 446 (1018)
T ss_pred HHHHc---------------------------------------------------------------------------
Confidence 11111
Q ss_pred CCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHH
Q 001645 633 SSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYE 712 (1038)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~ 712 (1038)
+..+.+...|.+...+...|+++.|...|+.
T Consensus 447 -------------------------------------------------~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 447 -------------------------------------------------GKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred -------------------------------------------------CCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 1113446777888888889999999999988
Q ss_pred HHHc---CCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHH
Q 001645 713 MRRN---GYLITP------DTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQ 783 (1038)
Q Consensus 713 m~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~ 783 (1038)
.... ...++. .+--.+...+-..++++.|.+.|..+.+. .|+-+....-+..+... .+...+|...+.
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~-k~~~~ea~~~lk 554 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARD-KNNLYEASLLLK 554 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHh-ccCcHHHHHHHH
Confidence 7654 111222 22333555666778899999999999885 56766554444444443 348888999888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHH--HHHHHHH------------HcCCHhHHHH
Q 001645 784 EMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYS--LYIRALC------------RAGELEEALA 849 (1038)
Q Consensus 784 ~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~li~~~~------------~~g~~~~A~~ 849 (1038)
.....+ ..++..+.-+.+.+.+...+..|.+-|..+.+.-...+.+|+ .|.+.|. ..+..++|++
T Consensus 555 ~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 555 DALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 887754 334445555666888888888898888777766544444443 3344332 2345788999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 850 LLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC 929 (1038)
Q Consensus 850 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 929 (1038)
+|++.... -+.|...-|.+.-.++..|++.+|..+|.++.+.. .-...+|-.+.++|...|++..|+++|+.....-.
T Consensus 634 ~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 634 LYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999886 35577888999999999999999999999999864 34567788999999999999999999999887633
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH------------------HhcCChHHHHHH
Q 001645 930 -EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCL------------------CKVGKSEEALEL 990 (1038)
Q Consensus 930 -~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~------------------~~~g~~~~A~~l 990 (1038)
.-+..+.+.|..++.+.|.+.+|.+.+.......|.-....+|..+... ...+..++|.++
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~ 791 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRL 791 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999988877773334444332221 112336778888
Q ss_pred HHHHHHCCCC
Q 001645 991 LSEMTESGIV 1000 (1038)
Q Consensus 991 ~~~m~~~g~~ 1000 (1038)
|.+|...+-+
T Consensus 792 F~~ls~~~d~ 801 (1018)
T KOG2002|consen 792 FTELSKNGDK 801 (1018)
T ss_pred HHHHHhcCCC
Confidence 8888765444
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=1e-17 Score=178.24 Aligned_cols=303 Identities=14% Similarity=0.167 Sum_probs=205.1
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHH
Q 001645 703 FKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIF 782 (1038)
Q Consensus 703 ~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~ 782 (1038)
+++|..-+.+..+..+. =...|+.|...+-..|+...|++.|++.... +|+-.....-+....+ ..+.+++|...|
T Consensus 200 l~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k-e~~~~d~Avs~Y 275 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK-EARIFDRAVSCY 275 (966)
T ss_pred cchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH-HHhcchHHHHHH
Confidence 33444444443333221 2345566666666666666666666666653 3443222112222222 334666666666
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC
Q 001645 783 QEMVNAGHIPD-KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKL 861 (1038)
Q Consensus 783 ~~m~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 861 (1038)
.+.... .|+ ...+..+.-.|...|.++.|+..++...+..|.-+.+|+.|..++-..|++.+|.+.+.+.... .+.
T Consensus 276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~ 352 (966)
T KOG4626|consen 276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPN 352 (966)
T ss_pred HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCc
Confidence 665543 332 3445555666777788888888888888888777888888888888888888888888888775 333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001645 862 DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPT-VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTAL 939 (1038)
Q Consensus 862 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l 939 (1038)
...+.+.|...|...|.+++|..+|....+- .|. ....|.|...|-+.|++++|+..+++.+. ++|+ ...|+.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 4567778888888888888888888877763 333 45677788888888888888888888876 5676 4678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHhccCC
Q 001645 940 IQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS-NINFRTIFFGLNREDN 1018 (1038)
Q Consensus 940 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 1018 (1038)
...|-..|+.+.|.+.+.+.+..+|. =....+.|..+|..+|+..+|++-+++.+. ++|| ...+..+++++.--.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhc
Confidence 88888888888888888888876655 456778888888888888888888888774 6675 3556666666544333
Q ss_pred h
Q 001645 1019 L 1019 (1038)
Q Consensus 1019 ~ 1019 (1038)
+
T Consensus 506 w 506 (966)
T KOG4626|consen 506 W 506 (966)
T ss_pred c
Confidence 3
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=6.1e-18 Score=192.32 Aligned_cols=298 Identities=14% Similarity=0.117 Sum_probs=189.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCC---HHHHHHHHHHHHhcCChhH
Q 001645 242 KAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLD---LSLYKIVMNCAAKLGDVDA 318 (1038)
Q Consensus 242 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~ 318 (1038)
..|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+++.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444332 12223344444444444444444444444433221111 1234444444444555555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 001645 319 VLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMD----RDHFETLVKGLCIAGRISDALEIVD 394 (1038)
Q Consensus 319 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 394 (1038)
|..+|+++.+.. .++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555444321 12233455555555555556666555555555433321 1234556667777888888888888
Q ss_pred HHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 001645 395 IMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDS 474 (1038)
Q Consensus 395 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~ 474 (1038)
++.+..+.+...+..+...|.+.|++++|.++|+++...+......+++.+...+...|++++|.+.++.+.+. .|+.
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 282 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGA 282 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 88777666666777788888888888888888888876543323456788888888999999999999988876 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 475 VAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCR---VSRTNEILKVLNNMQASKIVIGDE 545 (1038)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 545 (1038)
..+..++..+.+.|++++|..+|+++.+. .|+..+++.++..++. .|+.++++.++++|.+.++.|++.
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66788889999999999999999988776 4888888888887775 558899999999999888777765
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.4e-17 Score=189.37 Aligned_cols=300 Identities=17% Similarity=0.136 Sum_probs=250.2
Q ss_pred HHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhhcC
Q 001645 696 TAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSG---STYKYLIISLSGRKG 772 (1038)
Q Consensus 696 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~ 772 (1038)
.+...++++.|...|.++.+.++. +..++..+...+.+.|++++|..+++.+...+..++. ..+..+...+. ..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~--~~ 120 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL--KA 120 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH--HC
Confidence 456778999999999999988654 6778999999999999999999999999885322221 23444444444 45
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-----chHHHHHHHHHHcCCHhHH
Q 001645 773 RKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVP-----LSYSLYIRALCRAGELEEA 847 (1038)
Q Consensus 773 ~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A 847 (1038)
|++++|..+|.++.+.. ..+..++..++.++.+.|++++|.+.++.+.+.++.+. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 69999999999998763 34577889999999999999999999999998776543 2456778888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 848 LALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQE 927 (1038)
Q Consensus 848 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 927 (1038)
...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|.+.++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998863 33466788899999999999999999999987542333567889999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChh
Q 001645 928 GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCK---VGKSEEALELLSEMTESGIVPSNI 1004 (1038)
Q Consensus 928 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ 1004 (1038)
.|+...+..++..+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+..+|+.++++|.++++.|+..
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 577777789999999999999999999999886 4677889888888775 569999999999999988888775
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=3.7e-16 Score=166.46 Aligned_cols=274 Identities=15% Similarity=0.160 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001645 724 TWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDC 803 (1038)
Q Consensus 724 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 803 (1038)
.|-.|-..|...+.+++|+..|.+.... .|+......-+..... ..|.++-|+..|++.++..... ...|+.|..+
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYy-eqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanA 329 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYY-EQGLLDLAIDTYKRALELQPNF-PDAYNNLANA 329 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEe-ccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHH
Confidence 3444444444444555555555444432 3433222111111111 3346666666666665543222 3467777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 001645 804 LCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD-EFVFGSLIHGLVQRGQIEEA 882 (1038)
Q Consensus 804 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A 882 (1038)
+...|++.+|..++.+.+...+..+.+.+.|...|...|++++|..+|....+- .|. ...++.|...|-+.|++++|
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHH
Confidence 888888888888888888887777778888888888888888888888888773 444 44678888888888888888
Q ss_pred HHHHHHHHHcCCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 883 LAKVETMKQAGIYPT-VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTALIQGFANLGKVAEAWDVFYRMK 960 (1038)
Q Consensus 883 ~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 960 (1038)
+..+++..+ +.|+ ...|+.+...|-..|+++.|++.+.+.+.. .|. ....+.|...|-..|++.+|+.-+++..
T Consensus 408 i~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 408 IMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 888888776 4565 467888888888888888888888888764 554 4567788888888899999999998888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHCCCCCChhcHHH
Q 001645 961 IKGPFPDFRTYSMFIGCLCKVGKS-------EEALELLSEMTESGIVPSNINFRT 1008 (1038)
Q Consensus 961 ~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~l~~~m~~~g~~p~~~~~~~ 1008 (1038)
+..|. -+..|-.++.++---.+| .+-.++.++=.++..-|+...+.+
T Consensus 484 klkPD-fpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hs 537 (966)
T KOG4626|consen 484 KLKPD-FPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHS 537 (966)
T ss_pred ccCCC-CchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccc
Confidence 76554 334555555554333333 333344444334444555444333
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.2e-14 Score=174.11 Aligned_cols=256 Identities=17% Similarity=0.065 Sum_probs=206.8
Q ss_pred cCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001645 735 AGLTEMAMRVFEDMKANG-CNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLA 813 (1038)
Q Consensus 735 ~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A 813 (1038)
.+.+++|++.|+...+.+ ..|+.......+..+. ...|++++|+..++..++... .....+..+..++...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~-~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK-CLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHH
Confidence 478999999999999865 3344433333333332 245699999999999988642 2355778888999999999999
Q ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 814 KSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAG 893 (1038)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 893 (1038)
...++.+.+..+.++..|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999998888999999999999999999999999999852 3356678888899999999999999999988752
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 894 IYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT--VV------TYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 894 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+.+...|+.+...+...|++++|++.|++..+. .|+ .. .++..+..+...|++++|.+++++..+..+.
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 556788999999999999999999999999875 332 11 1222223344579999999999999988766
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001645 966 PDFRTYSMFIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 966 ~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
+..++..++.+|...|++++|++.+++..+.
T Consensus 541 -~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 -CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6778999999999999999999999998753
No 20
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=1.4e-12 Score=146.82 Aligned_cols=331 Identities=15% Similarity=0.091 Sum_probs=248.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 001645 200 TMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAG 279 (1038)
Q Consensus 200 ~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 279 (1038)
.....+...|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-..-... +-|...|-.+-....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 33444455599999999999999887 8889999999999999999999999887777654 557789999999999999
Q ss_pred ChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHHH
Q 001645 280 KGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERD----AYGCVLKSFCVSMRIREAL 355 (1038)
Q Consensus 280 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~~A~ 355 (1038)
+++.|.-+|.+.++... ++...+---...|-+.|+...|.+.|.++.......|.. .-..+++.|...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999998753 355566666778899999999999999998865421211 2334566777788889999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------C-----Chhh
Q 001645 356 EFIRNLKSK-EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNL-----------------------V-----DGKI 406 (1038)
Q Consensus 356 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------------------~-----~~~~ 406 (1038)
+.++..... +-..+...++.++..|.+...++.|......+..... . +..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 998887663 2233566788999999999999999988877765110 0 1111
Q ss_pred -HHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001645 407 -YGIIIGGYLRKNDLSKALVQFERMKESG--YLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAG 483 (1038)
Q Consensus 407 -~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 483 (1038)
...+-....+.++..+++. .-+.+.. +.-+...|.-+..++...|.+.+|..++..+.....--+..+|-.+..+
T Consensus 381 ~rl~icL~~L~~~e~~e~ll--~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALL--HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred HhHhhhhhcccccchHHHHH--HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 1111112223334444443 3344444 3345677888899999999999999999999887655567889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 484 HVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQ 536 (1038)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (1038)
|...|..++|...|+....... -+...-..|-..+.+.|+.++|++.+..+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999998887531 244445556667888999999999998865
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=4.7e-14 Score=144.45 Aligned_cols=375 Identities=16% Similarity=0.197 Sum_probs=268.3
Q ss_pred CChhcHHHHHhcCCCCCCHHHHHHHHHhh-c-cCchhHHHHHHHhhhCCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001645 143 NDVVSMEERLENLSFRFEPEVVDKVLKRC-F-KVPHLALRFFNWVKLREGFC-HATETYNTMLTIAGEAKELELLEELER 219 (1038)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~~vl~~~-~-~~~~~a~~~f~~~~~~~~~~-~~~~~~~~li~~l~~~~~~~~a~~l~~ 219 (1038)
+++.-+...++..|..+++.+-..++... . ++...-+.-.+|......+. -+..+| +.|.. |. ++-
T Consensus 132 KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~v--Ad-L~~ 200 (625)
T KOG4422|consen 132 KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAV--AD-LLF 200 (625)
T ss_pred chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccH--HH-HHH
Confidence 55677889999999999998776666542 1 22221111122222111111 122233 23333 22 443
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCC
Q 001645 220 EMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLD 299 (1038)
Q Consensus 220 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~ 299 (1038)
+.. |.+..+|..+|.+.|+-...+.|.+++.+-.....+.+..+||.+|.+-.-. ...++..+|....+.||
T Consensus 201 E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 201 ETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPN 272 (625)
T ss_pred hhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCc
Confidence 332 7888999999999999999999999999998877799999999999775432 23788999999999999
Q ss_pred HHHHHHHHHHHHhcCChh----HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCCC--
Q 001645 300 LSLYKIVMNCAAKLGDVD----AVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIRE-ALEFIRNLKS----KEISM-- 368 (1038)
Q Consensus 300 ~~~~~~li~~~~~~g~~~----~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~----~~~~p-- 368 (1038)
..|+|+++++.++.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 999999999999999875 467888999999999999999999999999888754 4444444433 33333
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 001645 369 --DRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV--------DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPM 438 (1038)
Q Consensus 369 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 438 (1038)
|...|..-+..|....+.+-|..+........-. ...-|..+....|+....+....+|+.|.-.-.-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 4556777788888999999999888777644321 123456677888899999999999999998877889
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH---H----------HHHHHH-------
Q 001645 439 ASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQD-NL---S----------EAWKVF------- 497 (1038)
Q Consensus 439 ~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~---~----------~A~~~~------- 497 (1038)
..+...++++..-.+.++-.-++|.+++..|..-+.....-++..+++.. +. + -|..++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999886666666666666666554 11 0 111111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 498 KCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 498 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
.+|....+ .....+.+.-.+.|.|+.++|.++|..+...
T Consensus 513 ~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 513 IRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 12333333 3445566666678888888888888887544
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=6.7e-14 Score=167.74 Aligned_cols=329 Identities=10% Similarity=-0.024 Sum_probs=197.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 001645 200 TMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAG 279 (1038)
Q Consensus 200 ~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 279 (1038)
.....+.+.|+++.|...|+...+. .|+...|..+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3444556667777777777776654 3556666677777777777777777777766553 334556666777777777
Q ss_pred ChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHH-----------------------------HHHHHcC
Q 001645 280 KGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIA-----------------------------DDMVRIS 330 (1038)
Q Consensus 280 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~-----------------------------~~m~~~~ 330 (1038)
++++|...|......+...+... ..++..+........+...+ .+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 285 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE-- 285 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc--
Confidence 77777666655443321111111 11111100000001111110 00000
Q ss_pred CCCCh-hhHHHHHHHH---HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh
Q 001645 331 QIPER-DAYGCVLKSF---CVSMRIREALEFIRNLKSKE-ISM-DRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDG 404 (1038)
Q Consensus 331 ~~p~~-~~~~~ll~~~---~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 404 (1038)
..++. ..+..+...+ ...+++++|.+.|+...+.+ ..| +...+..+...+...|++++|...|++....++...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 00100 0011111000 12356777888877777654 222 345566777777778888888888888777777666
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001645 405 KIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGH 484 (1038)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~ 484 (1038)
..|..+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|...|+..++.. +.+...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 677777777778888888888887776653 2346677777777777888888888888777763 23456666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001645 485 VRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
.+.|++++|...|++..... +-+...|+.+...+...|++++|++.|++...
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 77888888888887776543 22456677777777778888888887777654
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=8.4e-15 Score=174.53 Aligned_cols=332 Identities=11% Similarity=0.043 Sum_probs=234.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 001645 199 NTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNA 278 (1038)
Q Consensus 199 ~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 278 (1038)
-.++..+.+.|+++.|..+++...... +.+...+..++.+....|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345556677788888888888777664 5556666666677777888888888888887663 34456677777778888
Q ss_pred CChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 001645 279 GKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFI 358 (1038)
Q Consensus 279 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 358 (1038)
|+++.|...|+++.+.. +.+...+..+...+...|++++|...++.+......+.. .+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888887652 224567777777888888888888888777664432221 22222 3467778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHH----HHHHHHHHHHCC
Q 001645 359 RNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSK----ALVQFERMKESG 434 (1038)
Q Consensus 359 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g 434 (1038)
+.+.+....++...+..+...+.+.|++++|...+++....++.+...+..+...|...|++++ |...|++.....
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 8877665444444555566777788888888888888887777777777778888888888775 677787777653
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HH
Q 001645 435 YLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKS-YS 513 (1038)
Q Consensus 435 ~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~ 513 (1038)
+.+...+..+...+...|++++|...+++.++.. +.+...+..+...|.+.|++++|...|+.+...+ |+... +.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 2345677777788888888888888888887763 2245566677778888888888888888877653 44333 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 514 VFIKELCRVSRTNEILKVLNNMQASK 539 (1038)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (1038)
.+..++...|+.++|...|++..+..
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34566778888888888888876653
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=1.6e-14 Score=172.05 Aligned_cols=187 Identities=16% Similarity=0.096 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhH----HH
Q 001645 773 RKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEE----AL 848 (1038)
Q Consensus 773 ~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~ 848 (1038)
|++++|...++.+++....++......+..++.+.|++++|...++.+....+.++..+..+...|...|++++ |+
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 34555555555444433222222333334445555555555555555555555445555555555555555553 45
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 849 ALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEG 928 (1038)
Q Consensus 849 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g 928 (1038)
..|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|++.|+++.+.
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 5555555431 2234455555555555555555555555555432 223344445555555555555555555555543
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 929 CEPTVVT-YTALIQGFANLGKVAEAWDVFYRMKIKG 963 (1038)
Q Consensus 929 ~~pd~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~ 963 (1038)
.|+... +..+..++...|+.++|.+.|++..+..
T Consensus 348 -~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred -CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233222 2223444555555555555555555543
No 25
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.76 E-value=3.3e-14 Score=158.16 Aligned_cols=664 Identities=14% Similarity=0.118 Sum_probs=344.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 001645 217 LEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEM 296 (1038)
Q Consensus 217 l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 296 (1038)
++-.+...|+.|+.+||..+|..||..|+++.|- +|..|.-...+.+...|+.++.+...+++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445666677788888888888888888887777 7777776666666777777877777777776654
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHH
Q 001645 297 VLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLK-SKEISMDRDHFET 375 (1038)
Q Consensus 297 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ 375 (1038)
.|...||..|..+|...||+.....+=+.|.. ++..+...|.-.....++..+. ..+.-||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLES------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 56777888888888888876653322222222 2333444444333333333321 1233334332
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001645 376 LVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKN-DLSKALVQFERMKESGYLPMASTYTELMQHLFKLNE 454 (1038)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 454 (1038)
.+......|-++.+.+++..+........... .+.-+.... .+++-..+-....+ .|+..+|..++.+-...|+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCc
Confidence 33334455666666666655543322211111 122222222 23333332222222 4788888888888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 455 YKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNN 534 (1038)
Q Consensus 455 ~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (1038)
.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+-.+..+|....+
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~------ 290 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG------ 290 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc------
Confidence 88888888888888888777777777655 677777778888888888888888887777666665542111
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCC
Q 001645 535 MQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEP 614 (1038)
Q Consensus 535 m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 614 (1038)
+.|...+...-..+..+.++. .. ....+++-... .+
T Consensus 291 --~e~sq~~hg~tAavrsaa~rg-~~-a~k~l~~nl~~----------------------------------~v------ 326 (1088)
T KOG4318|consen 291 --EEGSQLAHGFTAAVRSAACRG-LL-ANKRLRQNLRK----------------------------------SV------ 326 (1088)
T ss_pred --ccccchhhhhhHHHHHHHhcc-cH-hHHHHHHHHHH----------------------------------HH------
Confidence 112211111112222222222 10 00000000000 00
Q ss_pred CCCCCChhhHHHHHHHhc-----CCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhh--ccCCCCCCCH
Q 001645 615 LPKPYCEQDLHEICRMLS-----SSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWV--GKQADYSHSS 687 (1038)
Q Consensus 615 ~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 687 (1038)
+..+-+.+. ....|..+.+.+. +..+....++.... -....-..++
T Consensus 327 ---------~~s~k~~fLlg~d~~~aiws~c~~l~h------------------Qgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 327 ---------IGSTKKLFLLGTDILEAIWSMCEKLRH------------------QGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred ---------HHHhhHHHHhccccchHHHHHHHHHHH------------------cCCCchHHHHHhhhcCCccccCcchH
Confidence 000000000 0011322222222 01111111111111 0111111222
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHH------------HcC
Q 001645 688 ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGR---AGLTEMAMRVFEDMK------------ANG 752 (1038)
Q Consensus 688 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~------------~~g 752 (1038)
..|..+ ++.+|.+..... ....++ .-.+... .....+..++....+ ...
T Consensus 380 ~a~~~~------------lrqyFrr~e~~~---~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~E 443 (1088)
T KOG4318|consen 380 DAFGAL------------LRQYFRRIERHI---CSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTE 443 (1088)
T ss_pred HHHHHH------------HHHHHHHHHhhH---HHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHH
Confidence 333322 334444443321 111111 0111111 111111111111110 000
Q ss_pred ----C-------CCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 753 ----C-------NPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLR 821 (1038)
Q Consensus 753 ----~-------~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 821 (1038)
. .+=....+.++..+++.. +...++..-+. .+....+ ..|..||+-++..++++.|..+.++..
T Consensus 444 ler~he~~~~~~h~irdi~~ql~l~l~se~--n~lK~l~~~ek-ye~~lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d 518 (1088)
T KOG4318|consen 444 LERSHEPWPLIAHLIRDIANQLHLTLNSEY--NKLKILCDEEK-YEDLLFA--GLYALLIKLMDLHDKLEYALSFVDEID 518 (1088)
T ss_pred HhcccccchhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHhh--hHHHHHhhhHHHHHHHHHHHhchhhhc
Confidence 0 011112233333333211 22222221111 1111111 567888888888888888888888776
Q ss_pred HcCCC---CcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 001645 822 KVGFT---VPLSYSLYIRALCRAGELEEALALLDEVKEERS-KLD-EFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYP 896 (1038)
Q Consensus 822 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 896 (1038)
..... +..-+..+.+.+.+.+....+..++.++.+.-. .|+ ..++--+++.....|+.+.-.++++-+...|+..
T Consensus 519 ~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 519 TRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred ccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 55433 234577888888899999999999988877421 222 3345556677778888888888888887777654
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------------HHHHHHhcCCHHHHHHH
Q 001645 897 TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTA---------------------LIQGFANLGKVAEAWDV 955 (1038)
Q Consensus 897 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~---------------------li~~~~~~g~~~~A~~~ 955 (1038)
+ .-++....+.++...|.+.++...++ ++|.+..... =+..|.++|+..+|.++
T Consensus 599 t----gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di 673 (1088)
T KOG4318|consen 599 T----GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDI 673 (1088)
T ss_pred c----ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhc
Confidence 2 23333445566666676666665443 2332222111 12235666666666655
Q ss_pred HHHH--HHcCC----------CC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHh
Q 001645 956 FYRM--KIKGP----------FP---------DFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLN 1014 (1038)
Q Consensus 956 ~~~m--~~~~~----------~~---------~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~ 1014 (1038)
.+.= ..+.. .| +.....-|+..|.++|+++.|..+|.+|+ +.|+..+...|...+.
T Consensus 674 ~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr 750 (1088)
T KOG4318|consen 674 TETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILR 750 (1088)
T ss_pred cccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHH
Confidence 4320 00000 00 11223448889999999999999999998 8899988888888887
Q ss_pred ccCChhh
Q 001645 1015 REDNLYQ 1021 (1038)
Q Consensus 1015 ~~g~~~~ 1021 (1038)
+.....+
T Consensus 751 ~~n~evd 757 (1088)
T KOG4318|consen 751 RMNEEVD 757 (1088)
T ss_pred hhchhcc
Confidence 7555443
No 26
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=4e-14 Score=157.50 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=78.1
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 187 LREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAV 266 (1038)
Q Consensus 187 ~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 266 (1038)
+..|..|+..||..+|.-|+..|+.+.|- +|..|.....+.+...|+.++.+...+++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 45688999999999999999999999999 9999998888999999999999999999888775 78899
Q ss_pred HHHHHHHHHHcCCChhH
Q 001645 267 AYKVLVRSLCNAGKGDI 283 (1038)
Q Consensus 267 ~~~~ll~~~~~~g~~~~ 283 (1038)
+|..|+.+|...||...
T Consensus 85 tyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHHHHhccchHH
Confidence 99999999999999876
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=1.1e-13 Score=168.74 Aligned_cols=309 Identities=11% Similarity=0.027 Sum_probs=204.7
Q ss_pred HHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHH
Q 001645 694 IKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSG------STYKYLIISL 767 (1038)
Q Consensus 694 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~ 767 (1038)
..++...|++++|...++++.+..+. +...+..+...+...+..++|+..++.... .|+. ......+...
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555443 445555556666666666667666665443 2221 0011111111
Q ss_pred Hhh---cCCCh---HHHHHHHHHHHHC-CCCCCHH-HH-H---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-chHHHH
Q 001645 768 SGR---KGRKV---DHAIKIFQEMVNA-GHIPDKE-LV-E---TYLDCLCEVGMLQLAKSCMDVLRKVGFTVP-LSYSLY 834 (1038)
Q Consensus 768 ~~~---~~~~~---~~A~~~~~~m~~~-~~~~d~~-~~-~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l 834 (1038)
... ..+++ ++|+..++.+++. ...|+.. .+ . ..+.++...|++++|+..|+.+.+.++..| ...-.+
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l 278 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV 278 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 100 01123 6677788877754 2223221 11 1 113345677899999999999888765433 222335
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCcc---
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKL---DEFVFGSLIHGLVQRGQIEEALAKVETMKQAG-----------IYPT--- 897 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~--- 897 (1038)
...|...|++++|+..|+++.+..... ....+..+..++...|++++|..+++.+.+.. -.|+
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 778899999999999999987642111 13456667778889999999999999988642 0122
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 977 (1038)
...+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.++++.+..|. +...+..++..
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~ 436 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Confidence 2345667788899999999999999998762 446778888999999999999999999999998776 77888888889
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhcHHHHH
Q 001645 978 LCKVGKSEEALELLSEMTESGIVPSNINFRTIF 1010 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~ 1010 (1038)
+...|++++|.++++++.+ ..|+......+=
T Consensus 437 al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~ 467 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVA--REPQDPGVQRLA 467 (765)
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 9999999999999999987 467665444443
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=1.4e-13 Score=167.89 Aligned_cols=335 Identities=13% Similarity=0.086 Sum_probs=208.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 192 CHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVL 271 (1038)
Q Consensus 192 ~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 271 (1038)
..++....-.+.+....|+.++|++++....... +.+...+..+..++.+.|++++|..+|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4456666667778889999999999999987633 6677789999999999999999999999987763 4456677788
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCC
Q 001645 272 VRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPER-DAYGCVLKSFCVSMR 350 (1038)
Q Consensus 272 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~ 350 (1038)
...+...|++++|...++++.+... .+.. +..+..++...|+.++|+..++++.+.. |+. ..+..+...+...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 8888999999999999999987633 3555 8888888889999999999999988854 443 335556677778888
Q ss_pred HHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHcCCC---ChhhH----HH
Q 001645 351 IREALEFIRNLKSKEISMDR------DHFETLVKGLC-----IAGRI---SDALEIVDIMMRRNLV---DGKIY----GI 409 (1038)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~~~~---~~~~~----~~ 409 (1038)
.++|++.++.... .|+. .....++..+. ..+++ ++|++.++.+.+.... ....+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 8888888876553 2221 01112222221 12223 5666666666643211 11111 11
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 001645 410 IIGGYLRKNDLSKALVQFERMKESGYL-PMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQP---DSVAVTAMVAGHV 485 (1038)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p---~~~~~~~li~~~~ 485 (1038)
.+..+...|++++|+..|+++.+.+.. |+. ....+...+...|++++|...|+.+.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 122334556677777777776655421 221 11123455666677777777776665542111 1233444555566
Q ss_pred hcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 486 RQDNLSEAWKVFKCMEDKGI-----------RPT---RKSYSVFIKELCRVSRTNEILKVLNNMQ 536 (1038)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (1038)
..|++++|...++.+..... .|+ ...+..+...+...|+.++|++.++++.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66677777766666654321 111 1123344445555555555555555554
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=7.1e-11 Score=127.71 Aligned_cols=611 Identities=11% Similarity=0.070 Sum_probs=415.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 001645 209 KELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFY 288 (1038)
Q Consensus 209 ~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 288 (1038)
++...|+.++....+.+ |.++..|.+-.+.--..|++..|..+..+--+. ++.+...|---+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 56778888888888877 777888887777777778877777665443322 233444443322 333445555555
Q ss_pred HHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001645 289 KEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDA-YGCVLKSFCVSMRIREALEFIRNLKSKEIS 367 (1038)
Q Consensus 289 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 367 (1038)
-...+. ++-++..| +.+---..+...=.+++++..+ ..|+.+. |-.. ...-+.+.|.-++.+..+.=..
T Consensus 339 A~Avr~-~P~Sv~lW---~kA~dLE~~~~~K~RVlRKALe--~iP~sv~LWKaA----VelE~~~darilL~rAveccp~ 408 (913)
T KOG0495|consen 339 ANAVRF-LPTSVRLW---LKAADLESDTKNKKRVLRKALE--HIPRSVRLWKAA----VELEEPEDARILLERAVECCPQ 408 (913)
T ss_pred HHHHHh-CCCChhhh---hhHHhhhhHHHHHHHHHHHHHH--hCCchHHHHHHH----HhccChHHHHHHHHHHHHhccc
Confidence 555443 12222222 2222112223333445555544 2344332 3332 2334445566666665553111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHH----HHHCCCCCCHHHHH
Q 001645 368 MDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFER----MKESGYLPMASTYT 443 (1038)
Q Consensus 368 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~ 443 (1038)
+ .-|.-+|.+..-++.|..++.+..+.-+.+..+|.+-...--.+|+.+...+++.+ +...|+..+..-|.
T Consensus 409 -s----~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 -S----MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred -h----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 1 23444566667777788888887777777777777777777777777776666554 34457777777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001645 444 ELMQHLFKLNEYKKGCELYNEMLKRGIQPD--SVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCR 521 (1038)
Q Consensus 444 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (1038)
.=...|-..|..-.+..+....+.-|++-. ..||..-...|.+.+.++-|..+|....+.- +-+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHh
Confidence 666777777777777777777776665432 3467777777777777777777777666542 1244445555444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccc
Q 001645 522 VSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNE 601 (1038)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 601 (1038)
.|..++...+|++....-
T Consensus 563 hgt~Esl~Allqkav~~~-------------------------------------------------------------- 580 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-------------------------------------------------------------- 580 (913)
T ss_pred cCcHHHHHHHHHHHHHhC--------------------------------------------------------------
Confidence 555555555555554321
Q ss_pred cccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCC
Q 001645 602 MERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQA 681 (1038)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 681 (1038)
T Consensus 581 -------------------------------------------------------------------------------- 580 (913)
T KOG0495|consen 581 -------------------------------------------------------------------------------- 580 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHH
Q 001645 682 DYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYK 761 (1038)
Q Consensus 682 ~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 761 (1038)
+.....|-+..+.+-..||...|+.++...-+..+. +...|-.-+..-..+..++.|..+|.+.... .|+...|.
T Consensus 581 --pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~m 655 (913)
T KOG0495|consen 581 --PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWM 655 (913)
T ss_pred --CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhH
Confidence 112234445555566678888999999888887766 7888888888888999999999999988775 45555543
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Q 001645 762 YLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDK-ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCR 840 (1038)
Q Consensus 762 ~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 840 (1038)
--+.... ..+..++|++++++.++. -||- ..|-.+...+-+.++++.|++.|..-.+.-|..+..|-.|...--+
T Consensus 656 Ks~~~er--~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 656 KSANLER--YLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred HHhHHHH--HhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 3332222 234889999999888875 3443 4566677788888999999999988888877778889999999999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHH
Q 001645 841 AGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEI 920 (1038)
Q Consensus 841 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~ 920 (1038)
.|.+-+|..+|++..-. .+.+...|-..|..=.+.|+.+.|..+..+..+. ++.+...|..-|...-+.++..+..+.
T Consensus 732 ~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred hcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHH
Confidence 99999999999998776 3557788999999999999999999998887765 466777888888888777776555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 001645 921 FERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIV 1000 (1038)
Q Consensus 921 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~ 1000 (1038)
+++ ++.|+.+.-++...|-...++++|.++|++.+..++. ...+|.-+...+..+|.-++-.+++..... ..
T Consensus 810 Lkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~--~E 881 (913)
T KOG0495|consen 810 LKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET--AE 881 (913)
T ss_pred HHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cC
Confidence 444 4678888888888888889999999999999998877 678888899999999998888898888764 35
Q ss_pred CC
Q 001645 1001 PS 1002 (1038)
Q Consensus 1001 p~ 1002 (1038)
|.
T Consensus 882 P~ 883 (913)
T KOG0495|consen 882 PT 883 (913)
T ss_pred CC
Confidence 53
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.9e-13 Score=140.08 Aligned_cols=348 Identities=14% Similarity=0.206 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHH-HHHHHHHHhCCCCCCHHHHHHH
Q 001645 300 LSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKS--FCVSMRIREA-LEFIRNLKSKEISMDRDHFETL 376 (1038)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A-~~~~~~m~~~~~~p~~~~~~~l 376 (1038)
+.+-|.|+.. ...|.+..+.-+|+.|...|..-+...-..+++. |..+.++.-| .+-|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 4456666654 3557778888888888887766555554444433 2233333322 2223334333322 22222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 001645 377 VKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYK 456 (1038)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 456 (1038)
+.|++.+ -+|+ .-+.+..++.+||.+.|+-...+.|.+++++..+...+.+..+||.+|.+-.-..
T Consensus 191 -----K~G~vAd--L~~E----~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~--- 256 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFE----TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV--- 256 (625)
T ss_pred -----ccccHHH--HHHh----hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc---
Confidence 3344333 2222 2334556799999999999999999999999998888999999999998765433
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHH
Q 001645 457 KGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSE----AWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTN-EILKV 531 (1038)
Q Consensus 457 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~ 531 (1038)
...++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++.. .|..+
T Consensus 257 -~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 257 -GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred -cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 38899999999999999999999999999998765 5677889999999999999999999999988763 45556
Q ss_pred HHHHHhC----CCC---C-CHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccc
Q 001645 532 LNNMQAS----KIV---I-GDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEME 603 (1038)
Q Consensus 532 ~~~m~~~----~~~---p-~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 603 (1038)
+.+++.. .+. | |..-|...+..|....+.+.+.++..+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~l---------------------------------- 381 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGL---------------------------------- 381 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHH----------------------------------
Confidence 6555442 233 3 334566777777776666666544432
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCC
Q 001645 604 RKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADY 683 (1038)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 683 (1038)
++....|..+....
T Consensus 382 ---------------------------l~tg~N~~~ig~~~--------------------------------------- 395 (625)
T KOG4422|consen 382 ---------------------------LKTGDNWKFIGPDQ--------------------------------------- 395 (625)
T ss_pred ---------------------------HHcCCchhhcChHH---------------------------------------
Confidence 22333333222111
Q ss_pred CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 001645 684 SHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYL 763 (1038)
Q Consensus 684 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 763 (1038)
....-|..+..+.++....+.-..+|+.|.-+-+-|+..+...++++..-.|.++-.-+++.++...|..-+...--.+
T Consensus 396 -~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei 474 (625)
T KOG4422|consen 396 -HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI 474 (625)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1123455566666777777888888888888777788888888889888899999999999988887644333333333
Q ss_pred HHHHH
Q 001645 764 IISLS 768 (1038)
Q Consensus 764 l~~~~ 768 (1038)
+..++
T Consensus 475 l~~L~ 479 (625)
T KOG4422|consen 475 LMLLA 479 (625)
T ss_pred HHHHh
Confidence 33333
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=1.2e-12 Score=155.88 Aligned_cols=453 Identities=11% Similarity=0.063 Sum_probs=286.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 001645 380 LCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGC 459 (1038)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 459 (1038)
..+.|+++.|+..|++..+.++.+......++..+...|+.++|+..+++.... -.........+...+...|+++.|.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 567788888888888888777775422226777777778888888877777621 1122233333345666677788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 460 ELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASK 539 (1038)
Q Consensus 460 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (1038)
++++++++.... +...+..++..|...++.++|+..++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 888877776422 4555666677777777777777777777665 2454444333333333444444666666665431
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCC
Q 001645 540 IVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPY 619 (1038)
Q Consensus 540 ~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1038)
T Consensus 200 -------------------------------------------------------------------------------- 199 (822)
T PRK14574 200 -------------------------------------------------------------------------------- 199 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 001645 620 CEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGR 699 (1038)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 699 (1038)
+.+...+..+...+.+
T Consensus 200 ----------------------------------------------------------------P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 200 ----------------------------------------------------------------PTSEEVLKNHLEILQR 215 (822)
T ss_pred ----------------------------------------------------------------CCCHHHHHHHHHHHHH
Confidence 1223444555555555
Q ss_pred CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHH
Q 001645 700 GKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAI 779 (1038)
Q Consensus 700 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~ 779 (1038)
.|-...|.++.++-... -+...+.-+ . .+.|. ++...+..++..- -..+. -.+.|+
T Consensus 216 ~~~~~~a~~l~~~~p~~---f~~~~~~~l-~-------~~~~a----~~vr~a~~~~~~~----~~r~~-----~~d~al 271 (822)
T PRK14574 216 NRIVEPALRLAKENPNL---VSAEHYRQL-E-------RDAAA----EQVRMAVLPTRSE----TERFD-----IADKAL 271 (822)
T ss_pred cCCcHHHHHHHHhCccc---cCHHHHHHH-H-------HHHHH----HHHhhcccccccc----hhhHH-----HHHHHH
Confidence 55544444433331110 011111100 0 00111 1111111111100 00000 234555
Q ss_pred HHHHHHHHC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcchHHHHHHHHHHcCCHhHHHHHHH
Q 001645 780 KIFQEMVNA-GHIPDK-----ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFT-VPLSYSLYIRALCRAGELEEALALLD 852 (1038)
Q Consensus 780 ~~~~~m~~~-~~~~d~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 852 (1038)
.-++.+... +..|.. ....-.+-++.+.|++.++++.++.+...+.+ ++.+--.+.++|...+++++|+.+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 556665542 112321 12223456778889999999999999988855 45677888999999999999999999
Q ss_pred HHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------Ccc--H-hhHHHHHHHHHhcCC
Q 001645 853 EVKEER-----SKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI-----------YPT--V-HVYTSFVVHFFREKQ 913 (1038)
Q Consensus 853 ~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~-~~y~~li~~~~~~g~ 913 (1038)
++.... ..++......|..+|...+++++|..+++.+.+..- .|+ - ..+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 986642 123444467888999999999999999999987310 111 1 233456777889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001645 914 VGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSE 993 (1038)
Q Consensus 914 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~ 993 (1038)
+.+|++.++++.... +-|......+...+...|++.+|+++++.+....|. +..+....+.++...|+|.+|..+.+.
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999998763 558888899999999999999999999888777666 788888999999999999999999988
Q ss_pred HHHCCCCCChhcHHH
Q 001645 994 MTESGIVPSNINFRT 1008 (1038)
Q Consensus 994 m~~~g~~p~~~~~~~ 1008 (1038)
..+ ..|+......
T Consensus 510 l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 510 VIS--RSPEDIPSQE 522 (822)
T ss_pred HHh--hCCCchhHHH
Confidence 876 3565543333
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=1.1e-11 Score=147.77 Aligned_cols=186 Identities=8% Similarity=0.017 Sum_probs=123.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHH
Q 001645 344 SFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKA 423 (1038)
Q Consensus 344 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 423 (1038)
...+.|+++.|+..|++..+..+.-....+ .++..+...|+.++|+..+++.......+......+...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345677777777777777765544212233 6777777778888888888777733333433344445677777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 424 LVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDK 503 (1038)
Q Consensus 424 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (1038)
+++|+++.+... -++..+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|+..++++.+.
T Consensus 122 iely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 888888777642 23455556677777778888888888877766 455555544444444456665688888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 504 GIRPTRKSYSVFIKELCRVSRTNEILKVLNN 534 (1038)
Q Consensus 504 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (1038)
.. -+...+..+..++.+.|-...|+++.++
T Consensus 199 ~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 199 AP-TSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 42 2556667777788888887777766655
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=2.6e-10 Score=128.86 Aligned_cols=359 Identities=13% Similarity=0.103 Sum_probs=272.3
Q ss_pred cCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 173 KVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLV 252 (1038)
Q Consensus 173 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (1038)
.+.+.|.+++.-+.++.+ .....|-+|..++-..|+.+.+...+--+...+ |.|...|..+.....+.|+++.|.-.
T Consensus 153 g~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 456679999988877654 467789999999999999999988776555444 77889999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 001645 253 FEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLY----KIVMNCAAKLGDVDAVLSIADDMVR 328 (1038)
Q Consensus 253 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 328 (1038)
|.+..+.. +++...+-.-...|-+.|+...|.+-|.++.+...+.|..-+ -.++..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999875 556556666678899999999999999999887553333323 3345666777777999998888777
Q ss_pred cC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------------------HHHHHHHHHHH
Q 001645 329 IS-QIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMD---------------------------RDHFETLVKGL 380 (1038)
Q Consensus 329 ~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------------------~~~~~~li~~~ 380 (1038)
.+ -..+...++.++..|.+...++.|......+.....++| ..+ -.+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 32 234455688888999999999999988888776222222 222 1223334
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 001645 381 CIAGRISDALEIVDIMMRRNLV---DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKK 457 (1038)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 457 (1038)
......+....+.......+.. +...|.-+..+|...|++.+|+++|..+......-+...|-.+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 4455555555555556666633 4567888999999999999999999999988666678889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 458 GCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMED--------KGIRPTRKSYSVFIKELCRVSRTNEIL 529 (1038)
Q Consensus 458 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~li~~~~~~g~~~~A~ 529 (1038)
|.+.|...+... +-+...--.|...+.+.|+.++|.+++..+.. .+..|+....-.....+.+.|+.++-+
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999873 33556667788889999999999999998652 233444444455566678888888877
Q ss_pred HHHHHHHh
Q 001645 530 KVLNNMQA 537 (1038)
Q Consensus 530 ~~~~~m~~ 537 (1038)
.....|+.
T Consensus 547 ~t~~~Lv~ 554 (895)
T KOG2076|consen 547 NTASTLVD 554 (895)
T ss_pred HHHHHHHH
Confidence 77766665
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=4.6e-09 Score=114.08 Aligned_cols=497 Identities=10% Similarity=0.029 Sum_probs=349.4
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001645 390 LEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRG 469 (1038)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g 469 (1038)
.+++++..+..+.++..|-..+. ..+.+.|.-++.+..+- ++.+...| -++.+..-++.|..+++...+.
T Consensus 366 ~RVlRKALe~iP~sv~LWKaAVe----lE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 366 KRVLRKALEHIPRSVRLWKAAVE----LEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHHh----ccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-
Confidence 34555555555555555554443 23444465556555543 22222322 2344555566666666666655
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 470 IQPDSVAVTAMVAGHVRQDNLSEAWKVFKC----MEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDE 545 (1038)
Q Consensus 470 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 545 (1038)
++-+...|.+-...--.+|+.+...+++++ +...|+..+...|-.=...|-+.|..-.+..+.+..+.-|+.-.+.
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 444556666655555666666666666553 3345666666666666666666666666666666666555543322
Q ss_pred --hHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhh
Q 001645 546 --IFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQD 623 (1038)
Q Consensus 546 --~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1038)
|+..--..|.+.+..+-+..+...
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~------------------------------------------------------ 541 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAH------------------------------------------------------ 541 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHH------------------------------------------------------
Confidence 333334444444333332211100
Q ss_pred HHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCCh
Q 001645 624 LHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDF 703 (1038)
Q Consensus 624 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 703 (1038)
...-++.+...|..+...-...|..
T Consensus 542 -------------------------------------------------------alqvfp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 542 -------------------------------------------------------ALQVFPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred -------------------------------------------------------HHhhccchhHHHHHHHHHHHhcCcH
Confidence 0011233445566666666667888
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHH
Q 001645 704 KHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQ 783 (1038)
Q Consensus 704 ~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~ 783 (1038)
++...+|++....-+. ....|-....-+-..|++..|..++....+.... +...|...+.... .+..+++|..+|.
T Consensus 567 Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~--en~e~eraR~lla 642 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF--ENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh--ccccHHHHHHHHH
Confidence 8888999998876554 6777877788888899999999999999987433 4555655555544 4568999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH
Q 001645 784 EMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDE 863 (1038)
Q Consensus 784 ~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 863 (1038)
+.... .|+..+|.--+...--.|+.++|+++++..++..+.-+-.|-.+...+-+.++++.|.+.|..-.+. ++-..
T Consensus 643 kar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~i 719 (913)
T KOG0495|consen 643 KARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSI 719 (913)
T ss_pred HHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCc
Confidence 98775 4666667666677777899999999999999988777778899999999999999999999877664 55667
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001645 864 FVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGF 943 (1038)
Q Consensus 864 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 943 (1038)
..|-.+...=.+.|.+-.|..+++...-.+ +-+...|-..|..-.+.|+.++|..+..+.++. |+-+...|.--|...
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLE 797 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhc
Confidence 788888888889999999999999988765 778899999999999999999999999998875 566778888889988
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHhccCChhh
Q 001645 944 ANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS-NINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 944 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 1021 (1038)
.+.++-......+++. .-|+.....+...+....++++|.+.|.+.+. +.|| -.+|..++.-..+.|.-++
T Consensus 798 ~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred cCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHH
Confidence 8888877777777764 33778888889999999999999999999986 4554 5677777777777775444
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=6.7e-12 Score=129.33 Aligned_cols=492 Identities=13% Similarity=0.134 Sum_probs=299.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HH
Q 001645 367 SMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDG--KIYGIIIGGYLRKNDLSKALVQFERMKESGYLPM----AS 440 (1038)
Q Consensus 367 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ 440 (1038)
..+..+...|..-|.......+|+..++.+++....+. ..-..+...|.+..++.+|+++++.....-...+ ..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 33445556667777777888888888888776654421 2223455677888888888888876665421111 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------
Q 001645 441 TYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSY-------- 512 (1038)
Q Consensus 441 t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------- 512 (1038)
..+.+--.+.+.|+++.|..-|+...+. .|+..+-..|+-++..-|+.++..+.|.+|......||..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3344444566778888888888877765 567666555666666778888888888877754333333221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCC
Q 001645 513 SVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQG 592 (1038)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1038)
..|+.--.++. .++.|.+.+ +. .+++. +...++ +...+..
T Consensus 356 ~~ll~eai~nd-------~lk~~ek~~-------------------ka-~aek~--i~ta~k---iiapvi~-------- 395 (840)
T KOG2003|consen 356 DNLLNEAIKND-------HLKNMEKEN-------------------KA-DAEKA--IITAAK---IIAPVIA-------- 395 (840)
T ss_pred hHHHHHHHhhH-------HHHHHHHhh-------------------hh-hHHHH--HHHHHH---Hhccccc--------
Confidence 11111111111 111221110 00 00000 000000 0000000
Q ss_pred CCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHH
Q 001645 593 PNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALH 672 (1038)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 672 (1038)
..|. ..-+| +.+.++.... .
T Consensus 396 ------------------------~~fa------------~g~dw------------------cle~lk~s~~-~----- 415 (840)
T KOG2003|consen 396 ------------------------PDFA------------AGCDW------------------CLESLKASQH-A----- 415 (840)
T ss_pred ------------------------cchh------------cccHH------------------HHHHHHHhhh-h-----
Confidence 0000 00001 1111111000 0
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcC-ChHHHHHHHHHHHH
Q 001645 673 FFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMM-QYGRAG-LTEMAMRVFEDMKA 750 (1038)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~-~~~~~g-~~~~A~~~~~~m~~ 750 (1038)
.+..+.. -.-...+.+.|+++.|.++++.+.......-...-+.|-. -|.+-| ++..|.++-+..+.
T Consensus 416 ---------~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln 484 (840)
T KOG2003|consen 416 ---------ELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN 484 (840)
T ss_pred ---------hhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc
Confidence 0000000 0111236788999999999998877644322223333322 233333 56666666665543
Q ss_pred cCCCCChhhHHHH--HH-HHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001645 751 NGCNPSGSTYKYL--II-SLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTV 827 (1038)
Q Consensus 751 ~g~~p~~~~~~~l--l~-~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 827 (1038)
...|+.. .. +-....+|+++.|.+.|++.+.....-....||.- -.+-..|++++|.++|-.+...-..+
T Consensus 485 ------~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 485 ------IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred ------ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 2222221 11 00001357999999999998876544333444432 34678899999999998876554444
Q ss_pred cchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHH
Q 001645 828 PLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVH 907 (1038)
Q Consensus 828 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~ 907 (1038)
....--+.+.|-...+...|++++.+.... ++.|.....-|...|-+.|+-..|++.+-+-.+. ++-+..+..-|...
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ay 635 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAY 635 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHH
Confidence 455566778888889999999999887664 6667888999999999999999999887655443 57788888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 908 FFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFA-NLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGK 983 (1038)
Q Consensus 908 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 983 (1038)
|....-+++|+.+|++.-- +.|+..-|..|+..|. +.|++.+|.++++....+-|. |.....-|+..+...|.
T Consensus 636 yidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 9999999999999998754 5899999998876665 789999999999999887666 88888888888888775
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=6.6e-12 Score=129.35 Aligned_cols=494 Identities=12% Similarity=0.061 Sum_probs=314.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 001645 407 YGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYT-ELMQHLFKLNEYKKGCELYNEMLKRGIQPD----SVAVTAMV 481 (1038)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~----~~~~~~li 481 (1038)
...|..-|.......+|+..++-+.+...-|+..... .+-..+.+.+.+..|.+.++..+..-...+ ....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3445566777778899999999888887777754332 244556778889999999998887622222 23455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChH
Q 001645 482 AGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEME 561 (1038)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 561 (1038)
-.+.+.|++++|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.--..||..-|..
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------------ 349 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------------ 349 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------------
Confidence 6688999999999999998876 48998877888888889999999999999987544444322110
Q ss_pred HHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHH
Q 001645 562 SVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQ 641 (1038)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 641 (1038)
.-+
T Consensus 350 --------------------------------------------------------~~d--------------------- 352 (840)
T KOG2003|consen 350 --------------------------------------------------------EKD--------------------- 352 (840)
T ss_pred --------------------------------------------------------CcC---------------------
Confidence 000
Q ss_pred HHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCC--CCCCCHHHHHHHHHHHhcCCChhh----HHHHHHHHHH
Q 001645 642 ESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQA--DYSHSSATYNMAIKTAGRGKDFKH----MRNLFYEMRR 715 (1038)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~----a~~l~~~m~~ 715 (1038)
..+..++.+.+.. +.+..+.+.. .-.....+-..+|.- .-.-++.. +.+.++.-..
T Consensus 353 --------dp~~~ll~eai~n---------d~lk~~ek~~ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~ 414 (840)
T KOG2003|consen 353 --------DPDDNLLNEAIKN---------DHLKNMEKENKADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQH 414 (840)
T ss_pred --------CcchHHHHHHHhh---------HHHHHHHHhhhhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhh
Confidence 0000111111100 0000000000 000000111111111 01111111 2222221111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHH
Q 001645 716 NGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKE 795 (1038)
Q Consensus 716 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~ 795 (1038)
.....+ .--.-..-|.++|+++.|+++++-+.+..-+.-....+.+-.......++++..|...-+..+... .-+..
T Consensus 415 ~~la~d--lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~ 491 (840)
T KOG2003|consen 415 AELAID--LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAA 491 (840)
T ss_pred hhhhhh--hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHH
Confidence 111101 111123457899999999999998876532222222222222222224567888887777665432 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ 875 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 875 (1038)
....-.+.-...|++++|.+.+.+.+..+..-......+...+-..|++++|++.|-++..- +..+....-.+.+.|..
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYEL 570 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 11111222334689999999999988765443333444556678899999999999887653 33466777778888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 876 RGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDV 955 (1038)
Q Consensus 876 ~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 955 (1038)
..+...|++++-+.... ++.|..+..-|.+.|-+.|+..+|.+.+-+--. -++-|..|...|..-|....-+++|+.+
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998776543 567888999999999999999999998765432 2455888888888888888889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCC
Q 001645 956 FYRMKIKGPFPDFRTYSMFIGC-LCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDN 1018 (1038)
Q Consensus 956 ~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 1018 (1038)
|++..- +.|+..-|..++.. +.+.|++..|++++++.-++ +.-|...++.|+..+..-|-
T Consensus 649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 998754 56888999887655 56799999999999998753 55577788888886655553
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=3.7e-07 Score=99.56 Aligned_cols=571 Identities=12% Similarity=0.134 Sum_probs=310.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHH
Q 001645 190 GFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRK-YGFEPDAVAY 268 (1038)
Q Consensus 190 ~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~ 268 (1038)
+.+|+...|..+=++ ++.+.-.+.+|+ ..|-.-+....++|++..-...|++... .-+......|
T Consensus 76 ~~~~T~~~~~~vn~c------~er~lv~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW 141 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC------FERCLVFMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIW 141 (835)
T ss_pred ccCCCChHHHHHHHH------HHHHHHHHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccch
Confidence 456666666655443 333444444442 3555566666778888888888877653 3334445678
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCChhhHHHHH
Q 001645 269 KVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRIS------QIPERDAYGCVL 342 (1038)
Q Consensus 269 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ll 342 (1038)
...+...-..+-++-+..+|+...+- ++..-+-.|..+++.+++++|.+.+...+... .+.+...|..+.
T Consensus 142 ~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc 217 (835)
T KOG2047|consen 142 DLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC 217 (835)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence 88888888888888888888877653 33446667777788888888888887766532 123333455555
Q ss_pred HHHHhcCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCC
Q 001645 343 KSFCVSMRIRE---ALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKND 419 (1038)
Q Consensus 343 ~~~~~~g~~~~---A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 419 (1038)
....+.-+.-. ..++++.+...-..-=...|.+|.+-|.+.|.+++|..+|++....-.. ..-+..+.++|++-..
T Consensus 218 dlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t-vrDFt~ifd~Ya~FEE 296 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMT-VRDFTQIFDAYAQFEE 296 (835)
T ss_pred HHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhee-hhhHHHHHHHHHHHHH
Confidence 54444433322 2233333332211112356788888888888888888888776654321 1114444444433211
Q ss_pred ----------------------HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001645 420 ----------------------LSKALVQFERMKESGY-----------LPMASTYTELMQHLFKLNEYKKGCELYNEML 466 (1038)
Q Consensus 420 ----------------------~~~A~~~~~~m~~~g~-----------~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~ 466 (1038)
++-.+.-|+.+...+. +-++.+|..-.. +..|+..+-...+.+++
T Consensus 297 ~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 297 SCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHH
Confidence 1222223333332210 112222222222 23355666666666666
Q ss_pred HCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001645 467 KRGIQPD------SVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPT---RKSYSVFIKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 467 ~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
+. +.|. ...|..+.+.|-..|+++.|..+|++......+-- ..+|......=.+..+++.|++++++...
T Consensus 375 ~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 375 KT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred Hc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 54 2222 23566777777777777777777777766533211 12333333444455666666665555432
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCC
Q 001645 538 SKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPK 617 (1038)
Q Consensus 538 ~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1038)
.|.... + .
T Consensus 454 ---vP~~~~----~-----------------------------------------------------------------~ 461 (835)
T KOG2047|consen 454 ---VPTNPE----L-----------------------------------------------------------------E 461 (835)
T ss_pred ---CCCchh----h-----------------------------------------------------------------h
Confidence 121111 0 0
Q ss_pred CCCh-hhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 001645 618 PYCE-QDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKT 696 (1038)
Q Consensus 618 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 696 (1038)
.|+. ..++ .+ +..+...|..+++.
T Consensus 462 ~yd~~~pvQ--~r-----------------------------------------------------lhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 462 YYDNSEPVQ--AR-----------------------------------------------------LHRSLKIWSMYADL 486 (835)
T ss_pred hhcCCCcHH--HH-----------------------------------------------------HHHhHHHHHHHHHH
Confidence 0000 0000 00 11234566777777
Q ss_pred HhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHh-hcCCC
Q 001645 697 AGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGS-TYKYLIISLSG-RKGRK 774 (1038)
Q Consensus 697 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~-~~~~~ 774 (1038)
-...|-++..+.+++.+.+..+. ++..--....-+-.+.-++++.++|++-...=-.|+.. .|+..+..+.. -.+.+
T Consensus 487 eEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 77777888888888888876554 55444444444445566788888887655442234432 45554444433 23457
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cchHHHHHHHHHHcCCHhHHHHH
Q 001645 775 VDHAIKIFQEMVNAGHIPDKE--LVETYLDCLCEVGMLQLAKSCMDVLRKVGFTV--PLSYSLYIRALCRAGELEEALAL 850 (1038)
Q Consensus 775 ~~~A~~~~~~m~~~~~~~d~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 850 (1038)
.+.|..+|++.++ |+.|... .|-.....--+-|....|.++++.....-... -..||+.|.--...=-+.....+
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 8889999998888 5555432 22222222234466677777777655433221 14577776655555455556666
Q ss_pred HHHHHHcCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHc-CCCccHhhHHHHHHHHHhcCC
Q 001645 851 LDEVKEERSKLDEFVFGSLI---HGLVQRGQIEEALAKVETMKQA-GIYPTVHVYTSFVVHFFREKQ 913 (1038)
Q Consensus 851 ~~~m~~~g~~p~~~t~~~li---~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~y~~li~~~~~~g~ 913 (1038)
|++.++. -|+...-...| ..=++.|.++.|..++..-.+. .-..+..-|.+.=..=.+.|+
T Consensus 645 YekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 645 YEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 7776664 34444332222 2234567777777776655442 222344456666555566666
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=4.2e-13 Score=144.14 Aligned_cols=262 Identities=17% Similarity=0.166 Sum_probs=114.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001645 728 MMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEV 807 (1038)
Q Consensus 728 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~ 807 (1038)
+...+.+.|++++|+++++........|+...|..++..++. ..++.+.|...++++...+.. +...+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccccccccccc-ccc
Confidence 355566667777777777554433223555555555554444 334677777777777665433 33445555555 577
Q ss_pred CCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 808 GMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEER-SKLDEFVFGSLIHGLVQRGQIEEALAKV 886 (1038)
Q Consensus 808 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~ 886 (1038)
+++++|.+++....+.. .++..+..++..+...++++++.++++++.+.. .+.+...|..+...+.+.|+.++|+..+
T Consensus 91 ~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777776655443 345566777888889999999999999977542 3467778888889999999999999999
Q ss_pred HHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001645 887 ETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP 966 (1038)
Q Consensus 887 ~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 966 (1038)
++..+.. +-|....+.++..+...|+.+++.++++...... +.|...+..+..+|...|+.++|..++++.....+.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 9998863 4457888899999999999999999999888763 556777889999999999999999999999998877
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 967 DFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 967 ~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
|+.....+++++...|+.++|.+++++..+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999887653
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=1e-10 Score=131.59 Aligned_cols=251 Identities=10% Similarity=0.032 Sum_probs=105.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 733 GRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQL 812 (1038)
Q Consensus 733 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~ 812 (1038)
.+.|+++.|...|.++.+. .|+...+..+..+-.....|+++.|...++++.+... -+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555442 3333222211111111123355555555555544431 123344444555555555555
Q ss_pred HHHHHHHHHHcCCCCcc--------hHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001645 813 AKSCMDVLRKVGFTVPL--------SYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALA 884 (1038)
Q Consensus 813 A~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 884 (1038)
|.+++..+.+....++. +|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555544433221 1111222222222333333333333221 22344444445555555555555555
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 885 KVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGP 964 (1038)
Q Consensus 885 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 964 (1038)
++++..+. +|+... .++.+.+..++.+++++..+++.+.. +-|...+.++...|.+.|++++|.+.|+.+.+..
T Consensus 285 ~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~- 358 (398)
T PRK10747 285 IILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR- 358 (398)
T ss_pred HHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 55444432 222211 11222223345555555555554431 1223334445555555555555555555554432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001645 965 FPDFRTYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 965 ~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
|+..+|..+..++.+.|+.++|.+.+++-
T Consensus 359 -P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 359 -PDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444445555555555555555555443
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.8e-09 Score=113.58 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=181.1
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHH
Q 001645 771 KGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALAL 850 (1038)
Q Consensus 771 ~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 850 (1038)
-.|+.-.|..-|+..+.....+.. .|--+..+|....+.++....|++..+.++.++.+|..-..++.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 345888888999998887655543 3667778899999999999999999999999999999888888999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 851 LDEVKEERSKL-DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC 929 (1038)
Q Consensus 851 ~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 929 (1038)
|++.+.. .| +...|.-+.-+..+.+++++++..|++.++. ++--...|+.....+...+++++|.+.|+..++.
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--
Confidence 9999885 34 4567777777778899999999999999875 6677889999999999999999999999999863
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 930 EPT---------VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 930 ~pd---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+|+ +.+-.+++-.- =.+++..|.+++++..+..|+ ....|..|...-.+.|+.++|+++|++-..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443 22222222222 238899999999999998888 668999999999999999999999998753
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=5.1e-10 Score=125.93 Aligned_cols=289 Identities=10% Similarity=0.033 Sum_probs=146.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHcCCChhHH
Q 001645 208 AKELELLEELEREMEINSCAKNIKTWTIL-VSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYK--VLVRSLCNAGKGDIA 284 (1038)
Q Consensus 208 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A 284 (1038)
.|+++.|++.+....+.. +++..+..+ ..+..+.|+.+.|...|.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666666666554431 222222222 33335666666666666666544 34433222 224455666666666
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 285 LEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSK 364 (1038)
Q Consensus 285 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 364 (1038)
...++++.+.... +...+..+...|.+.|++++|.+++..+.+....++.. ...+-
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~---------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLE---------------------- 228 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHH----------------------
Confidence 6666666555422 44555556666666666666666666665544332111 00000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001645 365 EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTE 444 (1038)
Q Consensus 365 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 444 (1038)
..+|..++.......+.+...++++.+.+..+.+......+...+...|+.++|.+++++..+. .|+....
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~-- 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV-- 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--
Confidence 0122222222233333444444444444333334445555555555555555555555555542 2333211
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001645 445 LMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSR 524 (1038)
Q Consensus 445 ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (1038)
++.+....++.+++.+..+...+.. +-|...+..+...+.+.|++++|.+.|+...+. .|+...|..+...+.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC
Confidence 1222223355666666666655542 224445556666666666666666666666654 3566666666666666666
Q ss_pred HHHHHHHHHHHH
Q 001645 525 TNEILKVLNNMQ 536 (1038)
Q Consensus 525 ~~~A~~~~~~m~ 536 (1038)
.++|.+++++-.
T Consensus 377 ~~~A~~~~~~~l 388 (398)
T PRK10747 377 PEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=7.3e-10 Score=110.65 Aligned_cols=289 Identities=15% Similarity=0.116 Sum_probs=189.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCC---HHHHHHHHHHHHhcCChhHHH
Q 001645 244 KLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLD---LSLYKIVMNCAAKLGDVDAVL 320 (1038)
Q Consensus 244 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~ 320 (1038)
.+.++|+++|.+|.+.. +.+..+--+|.+.|-+.|.++.|+++.+.+.++.--+. ....--|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34455555555555321 11222333444445555555555555555444311000 112223444455566666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001645 321 SIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDR----DHFETLVKGLCIAGRISDALEIVDIM 396 (1038)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (1038)
.+|..+.+.+. --......++..|-...+|++|++.-+++.+.+.++.. ..|--|...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66666554321 12234566777777777788888777777776655432 34556666677778899999999999
Q ss_pred HHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 001645 397 MRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVA 476 (1038)
Q Consensus 397 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~ 476 (1038)
.+.++..+.+-..+.+.+...|++++|++.++...+.+..--..+...|..+|...|+.++....+..+.+... ....
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~ 284 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADA 284 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccH
Confidence 99988888878888899999999999999999998886555567788899999999999999999999988743 3334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 001645 477 VTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRV---SRTNEILKVLNNMQAS 538 (1038)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 538 (1038)
-..+...-......+.|..++.+-..+ +|+...+..+|...... |...+-+..+++|...
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 444444445555667777766665554 48999999999876543 4566777778888654
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=3e-10 Score=128.51 Aligned_cols=291 Identities=11% Similarity=0.032 Sum_probs=174.1
Q ss_pred HhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChH
Q 001645 697 AGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVD 776 (1038)
Q Consensus 697 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 776 (1038)
....|+++.|.+.+....+.... ....+-....++.+.|+++.|...|.+..+. .|+......+..+-.....++++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 35577788888777776655322 1233333455666677888888888777654 24433211111111111345777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHH----HHHHHHHcCCHhHHHHHHH
Q 001645 777 HAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSL----YIRALCRAGELEEALALLD 852 (1038)
Q Consensus 777 ~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~ 852 (1038)
.|...++.+.+..+ -+..+...+..++...|++++|.+.+..+.+.+..++..+.. ....+...+..+++.+.+.
T Consensus 171 ~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888877777652 234566677777778888888888887777776554433321 1112233333344445666
Q ss_pred HHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhh---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 853 EVKEERSK---LDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHV---YTSFVVHFFREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 853 ~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---y~~li~~~~~~g~~~~A~~~~~~m~~ 926 (1038)
.+.+.... .+...+..+...+...|+.++|.+.+++..+. .||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 66554211 26667777777777788888888877777764 233321 11122222334667777777777765
Q ss_pred cCCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 927 EGCEPT-V--VTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 927 ~g~~pd-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
. .|+ . ....++...|.+.|++++|.+.|+........||...+.++...+.+.|+.++|.++|++-.
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 343 3 44557777777778888888877754443345666667777788888888888877777643
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=1.2e-09 Score=123.73 Aligned_cols=288 Identities=13% Similarity=0.016 Sum_probs=145.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChhHH
Q 001645 207 EAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDA--VAYKVLVRSLCNAGKGDIA 284 (1038)
Q Consensus 207 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A 284 (1038)
..|+++.|++.+....+.. +-....+-....++.+.|+.+.|...|.+..+. .|+. ...-.....+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4678888888877766543 223344445556666778888888888777654 2333 2233346666777777777
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHH
Q 001645 285 LEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGC---VLKSFCVSMRIREALEFIRNL 361 (1038)
Q Consensus 285 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~g~~~~A~~~~~~m 361 (1038)
...++.+.+.... +..++..+...+...|+++++.+.+..+.+.+..+....... ...++...+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777776432 555666777777777777777777777776653322211111 111112222222223333333
Q ss_pred HhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhH--HHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 001645 362 KSKEIS---MDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIY--GIIIGGYLRKNDLSKALVQFERMKESGYL 436 (1038)
Q Consensus 362 ~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 436 (1038)
.+..+. .+...+..+...+...|+.++|.+++++..+..+.+.... ..........++.+.+.+.++...+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 333221 2455566666666666666666666666666555432111 111111222344444444444433321 1
Q ss_pred CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 437 PMA--STYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKC 499 (1038)
Q Consensus 437 p~~--~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 499 (1038)
-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111 223334444444444444444444322222234444444444444444444444444443
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.8e-07 Score=96.79 Aligned_cols=457 Identities=10% Similarity=0.059 Sum_probs=267.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHH
Q 001645 383 AGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMA-STYTELMQHLFKLNEYKKGCEL 461 (1038)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~l 461 (1038)
.+++..|..+|++....+..+...|---+..-.++..+..|..++++.... -|-+ ..|--.+.+=-..|+...|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 455566667777666666555566666666666667777777777666543 2222 1222233333445677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001645 462 YNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIV 541 (1038)
Q Consensus 462 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (1038)
|..-.+- .|+...|.+.|+.-.+-..++.|..++++..-. .|++.+|....+-=.+.|....|..++...++.-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~-- 237 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL-- 237 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--
Confidence 7766654 677777777777777777777777777766543 3677777666666666677766666666654420
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCCh
Q 001645 542 IGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCE 621 (1038)
Q Consensus 542 p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1038)
.|+..-.
T Consensus 238 ~~d~~~e------------------------------------------------------------------------- 244 (677)
T KOG1915|consen 238 GDDEEAE------------------------------------------------------------------------- 244 (677)
T ss_pred hhHHHHH-------------------------------------------------------------------------
Confidence 0111111
Q ss_pred hhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 001645 622 QDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGK 701 (1038)
Q Consensus 622 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 701 (1038)
..++++...-.+++
T Consensus 245 ------------------------------------------------------------------~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 245 ------------------------------------------------------------------ILFVAFAEFEERQK 258 (677)
T ss_pred ------------------------------------------------------------------HHHHHHHHHHHHHH
Confidence 11122222222333
Q ss_pred ChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC---hHHHHHH-----HHHHHHcCCCCChhhHHHHHHHHHhhcC
Q 001645 702 DFKHMRNLFYEMRRNGYLIT-PDTWTIMMMQYGRAGL---TEMAMRV-----FEDMKANGCNPSGSTYKYLIISLSGRKG 772 (1038)
Q Consensus 702 ~~~~a~~l~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~~-----~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 772 (1038)
.++.|+-+|+-..+.=+.-. ...|.....-=-+.|+ +++++-- |+.+...+ .-|-.+|...+.... ..
T Consensus 259 E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e--~~ 335 (677)
T KOG1915|consen 259 EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEE--SV 335 (677)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHH--hc
Confidence 34444444444443221110 1222222222122233 2222211 22222221 223444444444333 23
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-------HHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHH----
Q 001645 773 RKVDHAIKIFQEMVNAGHIPDK-------ELVETY---LDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRAL---- 838 (1038)
Q Consensus 773 ~~~~~A~~~~~~m~~~~~~~d~-------~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~---- 838 (1038)
|+.+...++|+..+.. +.|-. .+|-.+ +-.-....+.+.+.++++..++.-|....++.-+--+|
T Consensus 336 g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 336 GDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4666666666666543 22311 111111 11112456777788888877776655555555444444
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHH
Q 001645 839 CRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRAL 918 (1038)
Q Consensus 839 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 918 (1038)
.++.++..|.+++.... |.-|-..+|...|..=.+.++++....++++..+.+ +-|..+|.-....--..|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 46778888998888765 457888888888888888999999999999988875 667788888888778889999999
Q ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC----------
Q 001645 919 EIFERMRQEGC-EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLC-----KVG---------- 982 (1038)
Q Consensus 919 ~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~-----~~g---------- 982 (1038)
.+|+-.+++.. .--...|.+.|+.-...|.+++|..+++++++.... ..+|..++.--. +.|
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kvWisFA~fe~s~~~~~~~~~~~~~e~~~ 569 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKVWISFAKFEASASEGQEDEDLAELEITD 569 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chHHHhHHHHhccccccccccchhhhhcch
Confidence 99998886421 113456777777777889999999999998886433 346666655443 344
Q ss_pred -ChHHHHHHHHHHH
Q 001645 983 -KSEEALELLSEMT 995 (1038)
Q Consensus 983 -~~~~A~~l~~~m~ 995 (1038)
+...|..+|++..
T Consensus 570 ~~~~~AR~iferAn 583 (677)
T KOG1915|consen 570 ENIKRARKIFERAN 583 (677)
T ss_pred hHHHHHHHHHHHHH
Confidence 5567778887754
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.2e-07 Score=99.55 Aligned_cols=446 Identities=12% Similarity=0.121 Sum_probs=284.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 001645 348 SMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQF 427 (1038)
Q Consensus 348 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 427 (1038)
++++..|..+|++.+.-... +...|-.-+++=.++..+..|..++++....-+.-...|.-.+..--..|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34555666666666655433 55566666676777777777777777776655444445666666666677777787777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001645 428 ERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRP 507 (1038)
Q Consensus 428 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 507 (1038)
++-.+. .|+...|.+.+..=.+.+..+.|..+++..+-. .|++.+|--....-.++|++..|..+|+...+. ..
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 776653 677788888887777777788888888777643 577777777777777778877777777766543 01
Q ss_pred CHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCcc
Q 001645 508 TRKSYSVFIKEL----CRVSRTNEILKVLNNMQASKIVIG-DEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEA 582 (1038)
Q Consensus 508 ~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 582 (1038)
|...-..+..++ .+.+.++.|.-+|+-.++.-..-. ...|..+...=.+-|+...++....-.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K------------ 306 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK------------ 306 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh------------
Confidence 222222333333 345556677666666655421111 223333333333334433222110000
Q ss_pred ccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHc
Q 001645 583 SGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHN 662 (1038)
Q Consensus 583 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 662 (1038)
T Consensus 307 -------------------------------------------------------------------------------- 306 (677)
T KOG1915|consen 307 -------------------------------------------------------------------------------- 306 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHH--------H
Q 001645 663 SEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITP-DTWTIMMMQY--------G 733 (1038)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~-~~~~~li~~~--------~ 733 (1038)
.-+..-......+.|-.+|--.+..-...|+.+..+++|+.....-++.+. ..|...|-.+ .
T Consensus 307 ---------Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 307 ---------RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred ---------hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111122334456666777777778999999999988865433222 2333333222 2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 001645 734 RAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLS--GRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQ 811 (1038)
Q Consensus 734 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~ 811 (1038)
...+.+.+.++|+..++. ++....||.-+=-.++ .....++..|.+++...+ |..|-..+|...|+.-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHH
Confidence 467788888999888873 4445566654433332 223457888888888765 45777888899999999999999
Q ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 812 LAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEER-SKLDEFVFGSLIHGLVQRGQIEEALAKVETMK 890 (1038)
Q Consensus 812 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 890 (1038)
..+.+++..++.+|.+-.+|.-....-...|+.+.|..+|+-..+.. +......|.+.|+-=...|.++.|..+++.+.
T Consensus 455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 99999999999998888889888888888999999999998887642 22234456666666667888888988888888
Q ss_pred HcCCCccHhhHHHHHH
Q 001645 891 QAGIYPTVHVYTSFVV 906 (1038)
Q Consensus 891 ~~g~~p~~~~y~~li~ 906 (1038)
+. .+-..+|-++..
T Consensus 535 ~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 535 DR--TQHVKVWISFAK 548 (677)
T ss_pred Hh--cccchHHHhHHH
Confidence 64 233335655544
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.8e-09 Score=107.95 Aligned_cols=285 Identities=14% Similarity=0.161 Sum_probs=224.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCCh
Q 001645 208 AKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDA------VAYKVLVRSLCNAGKG 281 (1038)
Q Consensus 208 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~ 281 (1038)
+.+.+.|.++|-+|.+.. +.+..+--+|-+.|.+.|.+++|+++.+.+.++ ||. .+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467899999999998754 566677788999999999999999999998864 442 3445566778889999
Q ss_pred hHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHHHHH
Q 001645 282 DIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERD----AYGCVLKSFCVSMRIREALEF 357 (1038)
Q Consensus 282 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~~A~~~ 357 (1038)
+.|+.+|..+.+.+. .-....--|+..|-...+|++|+++-+++...+.++... -|+-+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999987542 244577788999999999999999999999987766544 267777777788999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 001645 358 IRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV-DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYL 436 (1038)
Q Consensus 358 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 436 (1038)
+.+..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.++. -+.+...|..+|.+.|+.++....+.++.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9998887655 4555556778889999999999999999999987 4567889999999999999999999999887433
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 001645 437 PMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQD---NLSEAWKVFKCMED 502 (1038)
Q Consensus 437 p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 502 (1038)
++. -..+-.........+.|...+.+-+.. +|+...+..||....... ...+....++.|..
T Consensus 282 ~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 ADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 333 333444444455677777777777776 799999999998876543 35555666666654
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=2.5e-12 Score=138.09 Aligned_cols=258 Identities=14% Similarity=0.137 Sum_probs=69.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 001645 202 LTIAGEAKELELLEELEREMEINS-CAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGK 280 (1038)
Q Consensus 202 i~~l~~~~~~~~a~~l~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 280 (1038)
..++.+.|+++.|+++++...... .+.++..|..+...+...++.+.|+..++++...+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444555556666666554332222 13334444444444445555555555555555443 1233344444444 45555
Q ss_pred hhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 281 GDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRN 360 (1038)
Q Consensus 281 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 360 (1038)
+++|.+++....+.. ++...+..++. .+...++++++.++++.
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~-----------------------------------~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQ-----------------------------------LYYRLGDYDEAEELLEK 135 (280)
T ss_dssp ---------------------------H------------------------------------HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHH-----------------------------------HHHHHhHHHHHHHHHHH
Confidence 555555554443322 23333344444 44444555555555444
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 001645 361 LKSKE-ISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMA 439 (1038)
Q Consensus 361 m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 439 (1038)
+.... ...+...|..+...+.+.|+.++|++.+++..+.++.+..+.+.++..+...|+.+++.+++....... +.|+
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~ 214 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP 214 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH
Confidence 43221 223444555555555555555555555555555555555555555555555555555555555544432 2333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 440 STYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCM 500 (1038)
Q Consensus 440 ~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (1038)
..+..+..++...|+.++|...++...+.. +.|..+...+..++...|+.++|..+.++.
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 444555555555566666666666555532 235555555556666666666666555543
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=2.3e-06 Score=93.54 Aligned_cols=298 Identities=13% Similarity=0.133 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------
Q 001645 687 SATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLIT---PDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPS------- 756 (1038)
Q Consensus 687 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------- 756 (1038)
...|..+.+.|...|+++.|+.+|+...+-...-- ..+|..-...=.+..+++.|+++.+......-.|.
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 46688899999999999999999999887654421 24555555556677888889888877654311111
Q ss_pred ----------hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 757 ----------GSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFT 826 (1038)
Q Consensus 757 ----------~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 826 (1038)
...|+..+...- .-|.++....+|+.+++..+.. +.+.-.....+-...-++++.++++.-......
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleE--s~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEE--SLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 112222222111 2346777777788777765432 233333344455556677777777654444332
Q ss_pred Cc--chHHHHHHHHHH---cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCcc--
Q 001645 827 VP--LSYSLYIRALCR---AGELEEALALLDEVKEERSKLDEFVFGSLIHGL--VQRGQIEEALAKVETMKQAGIYPT-- 897 (1038)
Q Consensus 827 ~~--~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~-- 897 (1038)
+. ..|++.+.-+.+ .-+++.|..+|++..+ |++|...-+--|+-+- -+.|....|+.++++.... +.+.
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~ 621 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQR 621 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHH
Confidence 22 457777666654 2368889999999888 6776544333232221 2358888888888886543 3332
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVT---YTALIQGFANLGKVAEAWDVFYRMKIK-GPFPDFRTYSM 973 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ 973 (1038)
...||..|.--...=-+.....+|++.++. -||... .--....-++.|.++.|..++....+. .|..+..-|++
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~t 699 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDT 699 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHH
Confidence 356777775544444445567788888775 565433 233445556889999999999887664 67778888999
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 001645 974 FIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 974 l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
.=.-=.++|+- +.+++|+
T Consensus 700 wk~FEvrHGne----dT~keML 717 (835)
T KOG2047|consen 700 WKEFEVRHGNE----DTYKEML 717 (835)
T ss_pred HHHHHHhcCCH----HHHHHHH
Confidence 98888999993 3445554
No 50
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=5e-06 Score=95.02 Aligned_cols=292 Identities=11% Similarity=0.161 Sum_probs=172.9
Q ss_pred CCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC--CCCCHHHHHH
Q 001645 650 QYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNG--YLITPDTWTI 727 (1038)
Q Consensus 650 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~--~~~~~~~~~~ 727 (1038)
.-+++++..+|.....+....++......... ..|+......++++...+-..+..++++.+.-.+ +.-+.-.-|.
T Consensus 949 R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E--~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnL 1026 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYRRQLIDQVVQTALPE--TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNL 1026 (1666)
T ss_pred ccChHHHHHHHhccChHHHHHHHHHHHhcCCc--cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhh
Confidence 44677777777665555555555444333222 2344445556666666777777777777665332 1112222333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001645 728 MMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEV 807 (1038)
Q Consensus 728 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~ 807 (1038)
+|-.-.+. +...+.+..+++-... .|+.... .+ ..+-+++|..+|+.. ..+....+-|++ ..
T Consensus 1027 LiLtAika-d~trVm~YI~rLdnyD-a~~ia~i--ai------~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i 1088 (1666)
T KOG0985|consen 1027 LILTAIKA-DRTRVMEYINRLDNYD-APDIAEI--AI------ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NI 1088 (1666)
T ss_pred HHHHHhhc-ChHHHHHHHHHhccCC-chhHHHH--Hh------hhhHHHHHHHHHHHh-----cccHHHHHHHHH---Hh
Confidence 33333333 3344555555543321 1222111 11 123567777777653 223333333332 34
Q ss_pred CCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001645 808 GMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVE 887 (1038)
Q Consensus 808 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 887 (1038)
++++.|.+.-+.. ..|..|+.+..+-.+.|.+.+|++-|-+. -|...|.-+++...+.|.+++-..++.
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 5556665554432 34678888888888888888888777443 366778888888888888888888888
Q ss_pred HHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001645 888 TMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPD 967 (1038)
Q Consensus 888 ~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 967 (1038)
...+..-+|.+.+ .||-+|++.+++.+-++++ ..||......+.+-|...|.++.|.-++...
T Consensus 1158 MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------- 1220 (1666)
T KOG0985|consen 1158 MARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------- 1220 (1666)
T ss_pred HHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------
Confidence 7777665666554 7788888888876654442 2577777777777787878777777766643
Q ss_pred HHHHHHHHHHHHhcCChHHHHHH
Q 001645 968 FRTYSMFIGCLCKVGKSEEALEL 990 (1038)
Q Consensus 968 ~~~~~~l~~~~~~~g~~~~A~~l 990 (1038)
..|..|...+...|.+..|..-
T Consensus 1221 -SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1221 -SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665544
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=6.3e-10 Score=122.09 Aligned_cols=283 Identities=13% Similarity=0.101 Sum_probs=203.6
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhhcCCChHHHH
Q 001645 702 DFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGC--NPSGSTYKYLIISLSGRKGRKVDHAI 779 (1038)
Q Consensus 702 ~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~~~A~ 779 (1038)
+..+|...|..+...... +..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+--+- -+-++
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq------~~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ------DEVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH------hhHHH
Confidence 346788888885554433 445666678888889999999999999887521 123445555543322 11122
Q ss_pred HHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 001645 780 KIF-QEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEER 858 (1038)
Q Consensus 780 ~~~-~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 858 (1038)
..+ +.++... +-.+.+|.++.++|.-.++.+.|+++|+...+.++....+|+.+..-+.....+|.|...|+.....
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 222 2233322 2345788888888888888888888888888888877788888888888888888888888887652
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 001645 859 SKL-DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYT 937 (1038)
Q Consensus 859 ~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 937 (1038)
.| +-..|-.+.-.|.+.++++.|+-.|++..+.+ +-+.+....+...+-+.|+.++|++++++..... +-|+..-.
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 22 22345556677888888888888888888765 5667777788888888888888888888887643 23555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001645 938 ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 938 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
-.+..+.-.+++++|+..++++++.-|. +...|..++..|.+.|+.+.|+.-|.-|.+-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 5666777788888888888888887666 7778888888888888888888888887763
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=3.8e-09 Score=109.22 Aligned_cols=277 Identities=16% Similarity=0.116 Sum_probs=150.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 735 AGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAK 814 (1038)
Q Consensus 735 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 814 (1038)
.|++.+|.++..+-.+++ +..+.++++.+-+...-|+.+.+-.++.+..+....++....-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 456666666666555543 33334445544444444566666666666655443444455555555556666666666
Q ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 001645 815 SCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDE-------FVFGSLIHGLVQRGQIEEALAKVE 887 (1038)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~~~ 887 (1038)
.-.+.+.+.++.++........+|.+.|++.+...++..|.+.|.--|. .+|+.++.-....+..+.-...|+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 6666666666666666666666666666666666666666665543332 245555555444444444444444
Q ss_pred HHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001645 888 TMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPD 967 (1038)
Q Consensus 888 ~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 967 (1038)
...+. .+-+...-.+++.-+.++|+.++|.++.++..+.+..|+... .-.+.+-++.+.-++..++.....+. +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 44332 133344444555556666666666666666655544444111 12344555555555555555554444 4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCChhhh
Q 001645 968 FRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQI 1022 (1038)
Q Consensus 968 ~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~~ 1022 (1038)
+-.+.+|...|.+.+.|.+|.+.++.... ..|+..+|.-+.++|...|+.++.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHH
Confidence 45555666666666666666666654443 455666666666666666655553
No 53
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=7.3e-06 Score=93.73 Aligned_cols=781 Identities=14% Similarity=0.149 Sum_probs=366.4
Q ss_pred CCCCCCHHHHHHHHHhhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 001645 155 LSFRFEPEVVDKVLKRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWT 234 (1038)
Q Consensus 155 ~~~~~~~~~~~~vl~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~ 234 (1038)
+....++..+...+..-..+|++|++.-... +..--...|---...+...|++++|-++-...+ +|+..++.|.+
T Consensus 324 Lsv~v~e~~IVpyi~~~LqnpeLal~~A~R~----nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSP-rgILRt~~Ti~ 398 (1666)
T KOG0985|consen 324 LSVLVNEQNIVPYITNVLQNPELALRLAVRA----NLAGAENLFVRRFNELFAQGEYEEAAKVAASSP-RGILRTPGTIN 398 (1666)
T ss_pred EEEEecCcceehhhhccccChHHHHHhhhhc----CCccHHHHHHHHHHHHHhCccHHHHHHHHHhCc-hhhhcCHHHHH
Confidence 3334444444433333335677776654432 222233455555666677899999988877655 35566777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-----hCC--CcC-----CHHH
Q 001645 235 ILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMA-----QKE--MVL-----DLSL 302 (1038)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~--~~p-----~~~~ 302 (1038)
.+=..=...|+..--+..|..+...| +.|..----+.+.-...|+.+.....+.+=+ +.| ++| -..+
T Consensus 399 kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~i 477 (1666)
T KOG0985|consen 399 KFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSI 477 (1666)
T ss_pred HHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHH
Confidence 66666666788777888888888777 5555444444555555555555554443311 111 111 1122
Q ss_pred H------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 303 Y------KIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETL 376 (1038)
Q Consensus 303 ~------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 376 (1038)
| +-++.+|+..|.++++.-... +.|.+||.. .+++...+ -..+.+.++...|.+... ...-++.+
T Consensus 478 YlrAnvp~KVi~cfAE~Gqf~KiilY~k---KvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I 548 (1666)
T KOG0985|consen 478 YLRANVPAKVIQCFAETGQFKKIILYAK---KVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQI 548 (1666)
T ss_pred HHHcCCcHHHHHHHHHhcchhHHHHHHH---HcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHH
Confidence 2 335667777777776654443 456777643 34444444 567777777777766332 22334455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhh-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001645 377 VKGLCIAGRISDALEIVDIMMRRNLVDGKI-YGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEY 455 (1038)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 455 (1038)
.+.+........+..++-...+.+.++... -+-++..-.. .|-++-+.+...+.- ...-+..+.+.|.+.|-+
T Consensus 549 ~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~-----~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~ 622 (1666)
T KOG0985|consen 549 VDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLV-----HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLL 622 (1666)
T ss_pred HHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhc-----cchHHHHHHHhcccc-ccccHHHHHHHHHhcchH
Confidence 555555555555555555554444443211 1111111110 111111222222111 111144455556666666
Q ss_pred hHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 456 KKGCELYNEMLKR--------GIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNE 527 (1038)
Q Consensus 456 ~~a~~l~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (1038)
..|++.+.++..- -+.|+ .+ -.|.-.-.++++.+.++.|...+++-|..+..-+..-|+..=-.+.
T Consensus 623 qraLehytDl~DIKR~vVhth~L~pE-----wL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~ 696 (1666)
T KOG0985|consen 623 QRALEHYTDLYDIKRVVVHTHLLNPE-----WL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQA 696 (1666)
T ss_pred HHHHHhcccHHHHHHHHHHhccCCHH-----HH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHH
Confidence 6665555443221 01111 11 1233333455666666666655554444443333333333333333
Q ss_pred HHHHHHHHHhC-----------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCcc
Q 001645 528 ILKVLNNMQAS-----------KIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVE 596 (1038)
Q Consensus 528 A~~~~~~m~~~-----------~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 596 (1038)
.+++|+..... ++.-|+...-..|.+.++.|+..+++++- +....-..-........
T Consensus 697 li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERic------resn~YdpErvKNfLke------ 764 (1666)
T KOG0985|consen 697 LIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERIC------RESNCYDPERVKNFLKE------ 764 (1666)
T ss_pred HHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHH------hccccCCHHHHHHHHHh------
Confidence 33333333221 34455556666777777777776666432 11100000000000000
Q ss_pred ccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHc-cccchhhHHHHHH
Q 001645 597 LDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHN-SEMHGSAALHFFS 675 (1038)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 675 (1038)
..+.++-+...+|. .| .-|+++.--|-.......|...+.+..-.-+|..+.++|.. |... .++-+-
T Consensus 765 AkL~DqlPLiiVCD-------Rf--~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~---~ik~Li 832 (1666)
T KOG0985|consen 765 AKLTDQLPLIIVCD-------RF--DFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSED---FIKNLI 832 (1666)
T ss_pred ccccccCceEEEec-------cc--ccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHH---HHHHHH
Confidence 00000001111111 11 12333333332222233344444555555566666666643 3221 111000
Q ss_pred hhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hHHHHH---HHHHH---
Q 001645 676 WVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGL-TEMAMR---VFEDM--- 748 (1038)
Q Consensus 676 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~~m--- 748 (1038)
....|- ...+.++.-..+.+++.....+++.....|.. ++.++|+|...|...++ ++.-++ .|+..
T Consensus 833 --~~v~gq----~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVG 905 (1666)
T KOG0985|consen 833 --LSVRGQ----FPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVG 905 (1666)
T ss_pred --HHHhcc----CChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHh
Confidence 001111 11234455556666777777777777777776 78888888877765443 222110 01110
Q ss_pred ---HH-----------cC--------CCCChhhHHHHHHHHHhhcCC-ChHH--------HHHHHHHHHHCCC--CCCHH
Q 001645 749 ---KA-----------NG--------CNPSGSTYKYLIISLSGRKGR-KVDH--------AIKIFQEMVNAGH--IPDKE 795 (1038)
Q Consensus 749 ---~~-----------~g--------~~p~~~~~~~ll~~~~~~~~~-~~~~--------A~~~~~~m~~~~~--~~d~~ 795 (1038)
.+ .| +.-..+.|...-..+..+... -|.+ -..+.++.++.++ ..|+.
T Consensus 906 kYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe 985 (1666)
T KOG0985|consen 906 KYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPE 985 (1666)
T ss_pred hhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChH
Confidence 00 00 000011111111111111100 0011 1123333333332 12444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRKVGFT---VPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHG 872 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 872 (1038)
-.+.-+.++...+-..+-+++++++.-.... +...-|.|+-.-.+. +..+..++.+++-.- -.|+ +...
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny-Da~~------ia~i 1057 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY-DAPD------IAEI 1057 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC-Cchh------HHHH
Confidence 4455566666666666666666665533211 112223333333332 333444444444321 1111 2233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001645 873 LVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEA 952 (1038)
Q Consensus 873 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 952 (1038)
+..++-+++|..+|++. ..+....+.||.- -+.+++|.++-++.. .+..|..+..+-.+.|.+.+|
T Consensus 1058 ai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 44556667777777653 2233344444432 455566666555442 345667777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCChhhhh
Q 001645 953 WDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQIT 1023 (1038)
Q Consensus 953 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~~~ 1023 (1038)
.+-|-+. .|+..|.-+++...+.|+|++-..++....++.-.|.. =..+|.+|.+.+++-|++
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELE 1186 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHH
Confidence 7766554 36677777777777777777777766555544444432 335666776666665544
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.1e-07 Score=97.78 Aligned_cols=234 Identities=13% Similarity=0.054 Sum_probs=115.8
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCChhh
Q 001645 683 YSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYL--ITPDTWTIMMMQYGRAGLT-EMAMRVFEDMKANGCNPSGST 759 (1038)
Q Consensus 683 ~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~ 759 (1038)
++.+...-+-...+.-...|+++|..+|+++.+..+- -|..+|+.++-.--..... --|..++. -...+|. |
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~---idKyR~E--T 332 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN---IDKYRPE--T 332 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH---hccCCcc--c
Confidence 3333333333334444566777777777777665321 1445555544322111111 01111111 0112222 2
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 001645 760 YKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALC 839 (1038)
Q Consensus 760 ~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 839 (1038)
... |..+...+ ++.+.|...|++.++.+..- ...|..+.+-|....+...|.+.++...+..|.+-.+|-.|..+|.
T Consensus 333 CCi-IaNYYSlr-~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 333 CCI-IANYYSLR-SEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred eee-ehhHHHHH-HhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 222 22222211 25566666666666544222 2344444555666666666666666666655555555666666666
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 001645 840 RAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALE 919 (1038)
Q Consensus 840 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~ 919 (1038)
-.+.+.=|+-.|++..+. -+-|...|.+|..+|.+.+++++|+..|......| ..+...|..|.+.|-+.++.++|.+
T Consensus 410 im~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 666666666666665553 12345556666666666666666666665555443 2344555556666666666666655
Q ss_pred HHHHHHH
Q 001645 920 IFERMRQ 926 (1038)
Q Consensus 920 ~~~~m~~ 926 (1038)
.|++.++
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 5555543
No 55
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.31 E-value=1.2e-06 Score=96.47 Aligned_cols=171 Identities=12% Similarity=0.131 Sum_probs=110.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCH
Q 001645 341 VLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDL 420 (1038)
Q Consensus 341 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 420 (1038)
.+.+......|.+|+.+++.+...... ..-|..+.+.|...|+++.|+++|-+.. .++-.|..|.+.|++
T Consensus 738 aieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccH
Confidence 344555667778888888777665433 3456677788888888888888875432 266678888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 421 SKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCM 500 (1038)
Q Consensus 421 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (1038)
+.|.++-.+. .|.......|.+-..-+-+.|++.+|.++|-.+- .|+ .-|.+|-+.|..++.+++..+-
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 8888776543 3444555666666666777788888877764432 233 2356677777777777766543
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 501 EDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNM 535 (1038)
Q Consensus 501 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (1038)
... .-..|...+..-|-..|+...|.+-|-+.
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 221 12234455556666677777776665544
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=3.5e-08 Score=102.27 Aligned_cols=319 Identities=14% Similarity=0.106 Sum_probs=202.0
Q ss_pred HHHhhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 167 VLKRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIAG--EAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAK 244 (1038)
Q Consensus 167 vl~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~--~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g 244 (1038)
++.+..+.|.....+|..-+++. .-..+..++. -.|+|..|++++.+-.+.+ +.....|..-+.+--+.|
T Consensus 61 ~l~~v~~~~~~~~~w~~~rKrrr-------a~~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrg 132 (400)
T COG3071 61 LLRRVLRTPAHTRGWFSRRKRRR-------ARKALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRG 132 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcc
Confidence 33444444555555554332221 2233334433 3588999999888877766 555667777777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001645 245 LIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIAD 324 (1038)
Q Consensus 245 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 324 (1038)
+.+.|-.++.+..+.--.++...+-+........|+++.|..-.+++.+.+.. +.........+|.+.|++..+..++.
T Consensus 133 d~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 133 DEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred cHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999988888887633556667777778888888888888888888776544 56778888888888888888888888
Q ss_pred HHHHcCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001645 325 DMVRISQIPERD-------AYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMM 397 (1038)
Q Consensus 325 ~m~~~~~~p~~~-------~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (1038)
.|.+.+.-.+.. +|..+++-....+..+.-...|++...+ .+-++..-.+++.-+..+|+.++|.++.++..
T Consensus 212 ~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L 290 (400)
T COG3071 212 KLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL 290 (400)
T ss_pred HHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 888877654432 3555555554444444444444444332 23345556666666777777777777777766
Q ss_pred HcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 001645 398 RRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAV 477 (1038)
Q Consensus 398 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~ 477 (1038)
++...+. -...-.+.+-++.+.-++..+.-.... +-++..+.+|-..|.+.+.+.+|...|+..++. .|+..+|
T Consensus 291 k~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~ 364 (400)
T COG3071 291 KRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDY 364 (400)
T ss_pred HhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhH
Confidence 6655542 222233445555555555555444331 122355566666666666666666666655554 5666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 478 TAMVAGHVRQDNLSEAWKVFKCME 501 (1038)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~ 501 (1038)
+.+.++|.+.|+..+|.+++++..
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Confidence 666666666666666666666544
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=1.1e-06 Score=96.44 Aligned_cols=461 Identities=12% Similarity=0.130 Sum_probs=293.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhcc
Q 001645 338 YGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRK 417 (1038)
Q Consensus 338 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 417 (1038)
|..+++.| ..+++...+++.+.+.++..+ -..+.....-.++..|+-++|......-.+.++.+..+|..+.-.+...
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 34444443 457788888888888774332 3445555555577889999999999999888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 418 NDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVF 497 (1038)
Q Consensus 418 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 497 (1038)
.++++|++.|......+ +-|...+.-+--.-++.++++.........++.. +.....|..+.-++.-.|+...|..++
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888764 3355666666555567788888888877777752 223456777777888888889998888
Q ss_pred HHHHhCC-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHh
Q 001645 498 KCMEDKG-IRPTRKSYSVFIKE------LCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQ 570 (1038)
Q Consensus 498 ~~m~~~g-~~p~~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~ 570 (1038)
++..... -.|+...|...... ....|..++|++.+..-...- .|.
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dk-------------------------- 218 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDK-------------------------- 218 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHH--------------------------
Confidence 8877553 24566555443322 334555555555444332110 000
Q ss_pred hhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCC
Q 001645 571 GICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQ 650 (1038)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 650 (1038)
T Consensus 219 -------------------------------------------------------------------------------- 218 (700)
T KOG1156|consen 219 -------------------------------------------------------------------------------- 218 (700)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 651 YTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMM 730 (1038)
Q Consensus 651 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~ 730 (1038)
...-..-...+.+.+++++|..++..+..+++. +...|-.+..
T Consensus 219 ------------------------------------la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~ 261 (700)
T KOG1156|consen 219 ------------------------------------LAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEK 261 (700)
T ss_pred ------------------------------------HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHH
Confidence 000111223355677889999999999888643 4445555555
Q ss_pred HHHHcCChHHHH-HHHHHHHHcCC---CCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001645 731 QYGRAGLTEMAM-RVFEDMKANGC---NPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCE 806 (1038)
Q Consensus 731 ~~~~~g~~~~A~-~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~ 806 (1038)
++.+..+.-+++ .+|...-+.-. .|-....+.+.. ..-.+..-.++..+.+.|+.+ ++..+...|-.
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~------eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~ 332 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG------EELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKD 332 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc------chhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhc
Confidence 665444444455 66666554311 122222221111 112233444566677777654 33344444433
Q ss_pred cCCHHHHHHHHHHHHH----cC-----------CCCcch--HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH-HHHH
Q 001645 807 VGMLQLAKSCMDVLRK----VG-----------FTVPLS--YSLYIRALCRAGELEEALALLDEVKEERSKLDEF-VFGS 868 (1038)
Q Consensus 807 ~g~~~~A~~~~~~~~~----~~-----------~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 868 (1038)
-...+-..++...+.. .+ ++.+.. +..++..|-+.|+++.|+..++..... .|+.+ -|..
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~ 410 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLV 410 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHH
Confidence 2222222222222211 11 112233 355677888999999999999998874 67655 4556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHH-
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVT--------YTAL- 939 (1038)
Q Consensus 869 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~--------~~~l- 939 (1038)
-.+.+...|++++|..++++..+.. .||...-.--..-..++++.++|.++.......|. +... |..+
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHh
Confidence 6688999999999999999999876 57776665667777889999999999999988764 3322 3222
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHH
Q 001645 940 -IQGFANLGKVAEAWDVFYRMKI 961 (1038)
Q Consensus 940 -i~~~~~~g~~~~A~~~~~~m~~ 961 (1038)
..+|.++|++.+|++-|..+-.
T Consensus 488 ~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHH
Confidence 4567788889888887776543
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3e-07 Score=99.28 Aligned_cols=281 Identities=12% Similarity=0.042 Sum_probs=190.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001645 721 TPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETY 800 (1038)
Q Consensus 721 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~l 800 (1038)
++.....-..-+-..+++++..++++...+.. ++....+..-|..+.. .|+..+-..+=..+.+.-+ ....+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~e--l~~~n~Lf~lsh~LV~~yP-~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYE--LGKSNKLFLLSHKLVDLYP-SKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHH--hcccchHHHHHHHHHHhCC-CCCcchhhH
Confidence 33444444445555666666777666666542 2233333333333332 2233333334444444322 223445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcC
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEE--RS-KLDEFVFGSLIHGLVQRG 877 (1038)
Q Consensus 801 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p~~~t~~~li~~~~~~g 877 (1038)
.--|...|+..+|++.|.+....++.-...|-.+...|+-.|..+.|+..+....+. |. .|.. | +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHhc
Confidence 555666677888888887777776666678888888888888888888888777663 22 1221 2 334567778
Q ss_pred CHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 878 QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQE------GCEPTVVTYTALIQGFANLGKVAE 951 (1038)
Q Consensus 878 ~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~~~~~li~~~~~~g~~~~ 951 (1038)
+.+-|.++|.+..... +.|+..++-+.-.....+.+.+|..+|+..++. .......+++.|..+|.+.+++++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 8888888888877642 567777887777777788888888888887631 111256678888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 001645 952 AWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGL 1013 (1038)
Q Consensus 952 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~ 1013 (1038)
|+..+++.....++ |..+|.+++-+|...|+++.|.+.|.+.+ .+.|+..+...++.-.
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 99999999888887 88899999999999999999999998887 4788887777777644
No 59
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.5e-06 Score=97.07 Aligned_cols=590 Identities=13% Similarity=0.103 Sum_probs=303.5
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-C--------Cc
Q 001645 229 NIKTWTILVS--LYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQK-E--------MV 297 (1038)
Q Consensus 229 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~--------~~ 297 (1038)
|..|-.++++ .|.--|+.+.|.+-.+.++ +-..|..|.+.|.+..+++-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555544 3455677777776666655 3346777777777777777666665555432 1 01
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001645 298 LDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLV 377 (1038)
Q Consensus 298 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 377 (1038)
|+ .+-.-+.-.....|.+++|+.+|.+-.+ |-.|=+.|-..|.+++|+++-+.=-.-.+ ..||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 11 1111111222355677777777776655 33344455556777777776553222222 23555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 001645 378 KGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKK 457 (1038)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 457 (1038)
.-+-..++.+.|++.|++...+... ++ .|+. .++.....+.+++ .|...|.-...-+-..|+.+.
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafe---v~-rmL~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFE---VF-RMLK-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHH---HH-HHHH-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHH
Confidence 5556667777777776653221110 00 0111 0111111112222 233445555555556788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001645 458 GCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 458 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
|+.+|..... |-.+++..|-.|+.++|-++-++- | |..+...|.+.|-..|++.+|..+|-+.+
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq- 994 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ- 994 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH-
Confidence 8888876543 567788888889999998887652 2 66777778899999999999999998764
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCC
Q 001645 538 SKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPK 617 (1038)
Q Consensus 538 ~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1038)
+|...|+.|...+-.+....+-.+
T Consensus 995 --------afsnAIRlcKEnd~~d~L~nlal~------------------------------------------------ 1018 (1416)
T KOG3617|consen 995 --------AFSNAIRLCKENDMKDRLANLALM------------------------------------------------ 1018 (1416)
T ss_pred --------HHHHHHHHHHhcCHHHHHHHHHhh------------------------------------------------
Confidence 577778777666555443322111
Q ss_pred CCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 001645 618 PYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTA 697 (1038)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 697 (1038)
++..+.-.....++.+|.+++... .+++..++.+. .+...
T Consensus 1019 --------------s~~~d~v~aArYyEe~g~~~~~AV--mLYHkAGm~~k------------------------ALelA 1058 (1416)
T KOG3617|consen 1019 --------------SGGSDLVSAARYYEELGGYAHKAV--MLYHKAGMIGK------------------------ALELA 1058 (1416)
T ss_pred --------------cCchhHHHHHHHHHHcchhhhHHH--HHHHhhcchHH------------------------HHHHH
Confidence 011111112222333333332211 11122222111 11122
Q ss_pred hcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHH
Q 001645 698 GRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDH 777 (1038)
Q Consensus 698 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 777 (1038)
.+..++. |.++..+ +.....|+...+.-..-++...++++|..++...++. .-.+..|. +.++.-
T Consensus 1059 F~tqQf~-aL~lIa~--DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~AlqlC~---~~nv~v 1123 (1416)
T KOG3617|consen 1059 FRTQQFS-ALDLIAK--DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQLCK---NRNVRV 1123 (1416)
T ss_pred HhhcccH-HHHHHHH--hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHh---cCCCch
Confidence 2222222 2222211 1223347788888888888899999999988776652 22333332 224444
Q ss_pred HHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHH-----
Q 001645 778 AIKIFQEMVNAG-HIPD----KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEA----- 847 (1038)
Q Consensus 778 A~~~~~~m~~~~-~~~d----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----- 847 (1038)
..++-+.|.-.. -.|+ ..+...+.++|.+.|.+..|.+-|.+.-.. -.-++++.+.|+.++.
T Consensus 1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--------l~AMraLLKSGdt~KI~FFAn 1195 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--------LSAMRALLKSGDTQKIRFFAN 1195 (1416)
T ss_pred hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--------HHHHHHHHhcCCcceEEEEee
Confidence 444444443221 2232 245677889999999999988777654322 1235556666665442
Q ss_pred -----------HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHH
Q 001645 848 -----------LALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGR 916 (1038)
Q Consensus 848 -----------~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 916 (1038)
..+++ ...-..++.+...++.-|.+..-++.--.+|...-+. ...-|..+-. ..|-+++
T Consensus 1196 ~sRqkEiYImAANyLQ---tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~e 1265 (1416)
T KOG3617|consen 1196 TSRQKEIYIMAANYLQ---TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEE 1265 (1416)
T ss_pred ccccceeeeehhhhhh---hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHH
Confidence 11111 1112334444444444444433333322222222110 0000111101 1233445
Q ss_pred HHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCC
Q 001645 917 ALEIFERMRQEGC--------EPTVVTYTALIQGFANL-GKVAEAWDVFYRMKIKGPFP----DFRTYSMFIGCLCKVGK 983 (1038)
Q Consensus 917 A~~~~~~m~~~g~--------~pd~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~----~~~~~~~l~~~~~~~g~ 983 (1038)
|-..+.++.+++. +-+..-+...+...... .+..+.++-...|.+....| -...|..|+..|....+
T Consensus 1266 A~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~ 1345 (1416)
T KOG3617|consen 1266 AAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKN 1345 (1416)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhh
Confidence 5555555543320 01122222222222211 13445555555666553333 34678889999999999
Q ss_pred hHHHHHHHHHHHHC
Q 001645 984 SEEALELLSEMTES 997 (1038)
Q Consensus 984 ~~~A~~l~~~m~~~ 997 (1038)
|..|.+.+.+|..+
T Consensus 1346 y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1346 YKPAYRALTELQKK 1359 (1416)
T ss_pred ccHHHHHHHHHhhc
Confidence 99999999999864
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=1.4e-05 Score=89.89 Aligned_cols=127 Identities=18% Similarity=0.130 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 001645 866 FGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTALIQGFA 944 (1038)
Q Consensus 866 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~ 944 (1038)
|......+.+.+..++|...+.+..+.. +-....|......+...|+.++|.+.|...... .|+ .....++...+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 4455566777777788877777766542 445556666667777788888888888887763 564 456777888888
Q ss_pred hcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 945 NLGKVAEAWD--VFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 945 ~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+.|+..-|.+ ++..+.+.++. +...|..+...+.+.|+.++|.+-|....+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8887776666 88888888877 888888888888888888888888877664
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=2.2e-09 Score=117.97 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHh
Q 001645 336 DAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYL 415 (1038)
Q Consensus 336 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 415 (1038)
.+|.++..+|.-+++.+.|++.|++....+.. ...+|+.+..-+....++|+|...|+.....++..-.+|..+...|.
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 34555555555555555555555544443222 34444444455555555555555555555444444444445555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001645 416 RKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWK 495 (1038)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (1038)
+.++++.|.-.|++..+-+ +-+.+....+...+.+.|+.++|+++++++...... |...--..+..+...+++++|+.
T Consensus 501 Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred ccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHH
Confidence 5555555555555444432 112333334444444555555555555555444322 22222233344444555555555
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 496 VFKCMEDKGIRPT-RKSYSVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 496 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
.|+++.+. .|+ ...|..+.+.|.+.|+.+.|+.-|--+.+.
T Consensus 579 ~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 579 ELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55555443 222 233444444555555555555555444443
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.2e-07 Score=96.43 Aligned_cols=292 Identities=13% Similarity=0.100 Sum_probs=201.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCc--CCHHHHHHHHHHHHhcC
Q 001645 237 VSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMV--LDLSLYKIVMNCAAKLG 314 (1038)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g 314 (1038)
..+|-...+.++++.-.+.....|+.-+...-+....+.-...+++.|+.+|+++.+.+.- -|..+|+.++-.--...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3455555677777777777777776655554444445556667888888888888776431 35667776654432211
Q ss_pred Chh-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001645 315 DVD-AVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIV 393 (1038)
Q Consensus 315 ~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 393 (1038)
.+. -|..++. . -+--..|..++.+-|.-.++-++|...|++..+.++. ....|+.+.+-|....+...|.+.+
T Consensus 314 kLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 KLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 111 1111111 1 1122335666667777778888888888888877665 5667888888888888888888888
Q ss_pred HHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 001645 394 DIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPD 473 (1038)
Q Consensus 394 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~ 473 (1038)
++..+-++.|-..|-.|..+|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|...|......| ..+
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 88888888888888888888888888888888888877642 3367788888888888888888888888888776 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 474 SVAVTAMVAGHVRQDNLSEAWKVFKCMED----KGIRPT--RKSYSVFIKELCRVSRTNEILKVLNNMQ 536 (1038)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (1038)
...+..|.+.|-+.++.++|...|++..+ .|...+ ..+..-|..-+.+.+++++|........
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 67888888888888888888888876654 232222 1222234455667778887776555543
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4e-07 Score=98.37 Aligned_cols=214 Identities=14% Similarity=0.091 Sum_probs=139.3
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 001645 688 ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISL 767 (1038)
Q Consensus 688 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 767 (1038)
.+|-++.--|...++..+|++.|......... =...|-...+.|+-.|..+.|+..|...-+. -|.
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G----------- 378 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPG----------- 378 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccC-----------
Confidence 34444444444456666666666655443322 2235555666666666666666555444332 000
Q ss_pred HhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHH
Q 001645 768 SGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEA 847 (1038)
Q Consensus 768 ~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 847 (1038)
-..|- .| +.--|.+.+++..|.+.|.+.....|.+|...+-+.-..-..+.+.+|
T Consensus 379 ---------------------~hlP~--LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 379 ---------------------CHLPS--LY--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred ---------------------CcchH--HH--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHH
Confidence 01121 11 122355566777777777777777777777777777777778888888
Q ss_pred HHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 001645 848 LALLDEVKEE----R--SKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIF 921 (1038)
Q Consensus 848 ~~~~~~m~~~----g--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~ 921 (1038)
..+|+...+. + ...-..+++.|.++|.+.+..++|+..+++..... +-+..+|.++.-.|...|+++.|.+.|
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 8888877631 1 11234568888899999999999999999888753 678888889988999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHH
Q 001645 922 ERMRQEGCEPTVVTYTALIQGF 943 (1038)
Q Consensus 922 ~~m~~~g~~pd~~~~~~li~~~ 943 (1038)
.+.+. +.||..+...++..+
T Consensus 513 hKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 513 HKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHh--cCCccHHHHHHHHHH
Confidence 98875 578877776666533
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=5.8e-09 Score=109.02 Aligned_cols=200 Identities=15% Similarity=0.073 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001645 794 KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGL 873 (1038)
Q Consensus 794 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 873 (1038)
...+..+...+...|++++|...++...+..+.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45667778889999999999999999988887777888889999999999999999999998863 34566788888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001645 874 VQRGQIEEALAKVETMKQAGI-YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEA 952 (1038)
Q Consensus 874 ~~~g~~~~A~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 952 (1038)
...|++++|...+++..+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999886422 2344567778889999999999999999998753 33566788889999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 953 WDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 953 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.+.+++..+..+ .+...+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988743 3777888889999999999999999888764
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.2e-07 Score=100.26 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCH-HHHHHHHH
Q 001645 231 KTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPD-AVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDL-SLYKIVMN 308 (1038)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~ 308 (1038)
..+...-+-|.++|++++|++.|....+. .|| ++.|...-.+|...|+|+.+.+--....+. .|+- -.+.--.+
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 34445555666666777777777666655 555 566666666666666666666655555442 3331 13333334
Q ss_pred HHHhcCChhHH
Q 001645 309 CAAKLGDVDAV 319 (1038)
Q Consensus 309 ~~~~~g~~~~a 319 (1038)
++-..|+++++
T Consensus 192 A~E~lg~~~ea 202 (606)
T KOG0547|consen 192 AHEQLGKFDEA 202 (606)
T ss_pred HHHhhccHHHH
Confidence 44444554444
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=5e-06 Score=93.40 Aligned_cols=333 Identities=14% Similarity=0.104 Sum_probs=224.4
Q ss_pred CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 001645 684 SHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYL 763 (1038)
Q Consensus 684 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 763 (1038)
.-+..+|..+.-+..+.|+++.+-+.|++....-+. .-..|+.+...|...|.-..|..+++.-....-.|+..+-..+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 346678888888889999999999999888764443 6678999999999999999999999887665444777777777
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHC--CCC--CCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCc
Q 001645 764 IISLSGRKGRKVDHAIKIFQEMVNA--GHI--PDKELVETYLDCLCEV-----------GMLQLAKSCMDVLRKVGFTVP 828 (1038)
Q Consensus 764 l~~~~~~~~~~~~~A~~~~~~m~~~--~~~--~d~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~ 828 (1038)
....|...-+.+++++++-...+.. +.. .....+-.+.-+|... -...++.+.++...+.++.++
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 7777766667888888888777762 111 1123333333333322 123356666777777777777
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCC-------------
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQ-AGI------------- 894 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~------------- 894 (1038)
.+...+.--|+..++++.|++...+..+.+..-+...|..+.-.+.-.+++.+|+.+.+.... .|.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 665566666777778888888888877776666777777777777777777777666554432 111
Q ss_pred --------------------------------------------------------------------------------
Q 001645 895 -------------------------------------------------------------------------------- 894 (1038)
Q Consensus 895 -------------------------------------------------------------------------------- 894 (1038)
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence
Q ss_pred Cc--c------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001645 895 YP--T------VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP 966 (1038)
Q Consensus 895 ~p--~------~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 966 (1038)
.| + ...|....+.+.+.++.++|.-.+.+.... +.-.+..|......+...|..++|.+.|......+|.
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~- 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD- 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-
Confidence 00 0 011223333444444444444444444332 1223445555556666778888888888888887777
Q ss_pred CHHHHHHHHHHHHhcCChHHHHH--HHHHHHHCCCCC-ChhcHHHHHHHHhccCChhh
Q 001645 967 DFRTYSMFIGCLCKVGKSEEALE--LLSEMTESGIVP-SNINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 967 ~~~~~~~l~~~~~~~g~~~~A~~--l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 1021 (1038)
++.+..++..+|.+.|+..-|.. ++.++++ +.| +...|-.+-..+...|+.++
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHH
Confidence 77888889999999888777777 8888886 345 56788888888888898887
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=1.1e-08 Score=120.48 Aligned_cols=148 Identities=11% Similarity=-0.016 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHH
Q 001645 775 VDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEV 854 (1038)
Q Consensus 775 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 854 (1038)
+++|...+++.++.+. -+...+..+..++...|++++|...++...+.+|.++..|..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555555544431 123344444444455555555555555555555544444555555555555555555555555
Q ss_pred HHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 855 KEERSKLDE-FVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMR 925 (1038)
Q Consensus 855 ~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 925 (1038)
.+. .|+. ..+..++..+...|++++|...++++.+..-+-+...+..+..+|...|+.++|...++++.
T Consensus 399 l~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 399 LKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred Hhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 443 2221 11222222333445555555555544432211122234444444445555555555554443
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=2.7e-05 Score=85.96 Aligned_cols=623 Identities=13% Similarity=0.097 Sum_probs=329.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 001645 207 EAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALE 286 (1038)
Q Consensus 207 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 286 (1038)
..+++....++.+.+.+ +.+....+.....-.+...|+-++|.+....-.... ..+.+.|+.+.-.+-...++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 45667777777777766 334455555555555667788888888777766543 4456778888777777888889999
Q ss_pred HHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 287 FYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPE-RDAYGCVLKSFCVSMRIREALEFIRNLKSKE 365 (1038)
Q Consensus 287 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 365 (1038)
.|......+. -|...+.-+.-.-++.|+++..........+. .|. ...|.....++.-.|+...|.+++++..+..
T Consensus 97 cy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888877543 36667777766667778888877777776663 233 3447777888888899999999998887764
Q ss_pred -CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 001645 366 -ISMDRDHFETLV------KGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPM 438 (1038)
Q Consensus 366 -~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 438 (1038)
-.|+...|.... ....+.|.+++|.+.+......-......-.+-...+.+.+++++|..++..+... .||
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 345555554332 23356677777777766554433322233445566777788888888888887765 366
Q ss_pred HHHHHHHHHHHH-hcCChhHHH-HHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001645 439 ASTYTELMQHLF-KLNEYKKGC-ELYNEMLKRG---IQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYS 513 (1038)
Q Consensus 439 ~~t~~~ll~~~~-~~~~~~~a~-~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 513 (1038)
..-|...+..+. +..+.-++. .+|....+.- ..|-....+.+ .-..-.+..-.++..+.++|+++-.....
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~ 327 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL----NGEELKEIVDKYLRPLLSKGVPSVFKDLR 327 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh----CcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence 655555444433 233322222 5555444331 11111111111 01111233344555555666543222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCC
Q 001645 514 VFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGP 593 (1038)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 593 (1038)
.| |-.-...+ +++++... +. +.+.++++.
T Consensus 328 SL---yk~p~k~~----~le~Lvt~---------------y~--------------------~~L~~~~~f--------- 356 (700)
T KOG1156|consen 328 SL---YKDPEKVA----FLEKLVTS---------------YQ--------------------HSLSGTGMF--------- 356 (700)
T ss_pred HH---HhchhHhH----HHHHHHHH---------------HH--------------------hhcccccCC---------
Confidence 21 11111110 22222110 00 000000000
Q ss_pred CccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHH
Q 001645 594 NVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHF 673 (1038)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 673 (1038)
+..|
T Consensus 357 --------------------------~~~D-------------------------------------------------- 360 (700)
T KOG1156|consen 357 --------------------------NFLD-------------------------------------------------- 360 (700)
T ss_pred --------------------------Cccc--------------------------------------------------
Confidence 0000
Q ss_pred HHhhccCCCCCCCH--HHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 001645 674 FSWVGKQADYSHSS--ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKAN 751 (1038)
Q Consensus 674 ~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 751 (1038)
....-+|.+ .++-.+++.+-+.|+++.|..+++.....-+. -+.-|-.-.+.+...|++++|...+++..+.
T Consensus 361 -----~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 361 -----DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred -----ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 000012222 34455677788899999999999988865322 2345555567888899999999999998876
Q ss_pred CCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHH
Q 001645 752 GCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETY------------LDCLCEVGMLQLAKSCMDV 819 (1038)
Q Consensus 752 g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~l------------i~~~~~~g~~~~A~~~~~~ 819 (1038)
+ .||...-.-...... ..+.+++|.++.....+.|. +. .+.| ..+|.+.|++..|.+-|..
T Consensus 435 D-~aDR~INsKcAKYmL--rAn~i~eA~~~~skFTr~~~--~~--~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYML--RANEIEEAEEVLSKFTREGF--GA--VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred c-chhHHHHHHHHHHHH--HccccHHHHHHHHHhhhccc--ch--hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 4 244433222222222 34588899988888887774 11 1111 2334444444444444433
Q ss_pred HHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC
Q 001645 820 LRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAG----IY 895 (1038)
Q Consensus 820 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~ 895 (1038)
+.+.-..-..----.-..|.+.|-+..=+++++.--.. .-+..-+.+ ...|++++-.|.+.. ..
T Consensus 508 i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L--~~~p~y~~A----------a~~Ai~iYl~l~d~p~~~~~~ 575 (700)
T KOG1156|consen 508 IEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNL--RSSPYYLRA----------AKGAIEIYLRLHDSPNMYTNK 575 (700)
T ss_pred HHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhh--ccChHHHHH----------HHHHHHHHHHHhcCccccccc
Confidence 32211000000000011122222222222222111110 011111111 123455555554321 00
Q ss_pred ccHhhHHH--HHHHHHhc-CCHHHHHHHHHHHHH---------cCCC--CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 001645 896 PTVHVYTS--FVVHFFRE-KQVGRALEIFERMRQ---------EGCE--PTVVTYTALIQGFANLGK-VAEAWDVFYRMK 960 (1038)
Q Consensus 896 p~~~~y~~--li~~~~~~-g~~~~A~~~~~~m~~---------~g~~--pd~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 960 (1038)
.+...-.+ +-....+. .+..+|...-+.+.+ .|.+ ||.. -+...+.+..+ .++|.+++....
T Consensus 576 ~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~ 652 (700)
T KOG1156|consen 576 ADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQ 652 (700)
T ss_pred chhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHH
Confidence 00000011 11111111 112223322222221 1322 3433 33444555544 678999999888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 961 IKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 961 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
..+.. +..+|..-...|.+.|++.-|.+.+++...
T Consensus 653 ~~~~~-~~~~~iL~~ely~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 653 HKGKE-KGETYILSFELYYRKGKFLLALACLNNAEG 687 (700)
T ss_pred Hhccc-chhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 88777 889999999999999999999999888763
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.2e-10 Score=86.98 Aligned_cols=49 Identities=31% Similarity=0.510 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHH
Q 001645 861 LDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFF 909 (1038)
Q Consensus 861 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~ 909 (1038)
||.++||++|++|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=1.4e-10 Score=86.75 Aligned_cols=50 Identities=28% Similarity=0.649 Sum_probs=43.3
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 896 PTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFAN 945 (1038)
Q Consensus 896 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 945 (1038)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||++|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888864
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=6.2e-08 Score=114.09 Aligned_cols=266 Identities=10% Similarity=-0.016 Sum_probs=173.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------cCCChhHHHHHHHHHH
Q 001645 227 AKNIKTWTILVSLYGK-----AKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLC---------NAGKGDIALEFYKEMA 292 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---------~~g~~~~A~~~~~~m~ 292 (1038)
+.+...|...+.+-.. .+..++|+..|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4556666666555322 234678888888888663 223445555544433 2344778888888888
Q ss_pred hCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 293 QKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPE-RDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRD 371 (1038)
Q Consensus 293 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 371 (1038)
+.+.. +...+..+...+...|++++|...|++..+.. |+ ...|..+...+...|++++|...+++..+..+. +..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 76543 66777788888888888888888888888754 44 345777778888889999999988888877655 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLV-DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMAS-TYTELMQHL 449 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~ 449 (1038)
.+..++..+...|++++|...+++......+ +...+..+...|...|++++|...+.++... .|+.. ..+.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 3333444566678888898888888766533 4556777888888889999999888886554 33433 334444455
Q ss_pred HhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 450 FKLNEYKKGCELYNEMLKRG-IQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKG 504 (1038)
Q Consensus 450 ~~~~~~~~a~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (1038)
...| +.+...++.+.+.. ..+....+ +-..|.-.|+.+.+... +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 5555 47777777666531 12222222 33445556777666666 7777653
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=8.5e-06 Score=82.76 Aligned_cols=274 Identities=11% Similarity=0.048 Sum_probs=137.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 001645 205 AGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIA 284 (1038)
Q Consensus 205 l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 284 (1038)
+...+++..|..+++.-...+-.-...+---+..+|...|++++|+..+..+.... .|+...+-.|.-.+.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 34456677777776655432211111222223445567777777777777766543 44555554444444445666666
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 285 LEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSK 364 (1038)
Q Consensus 285 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 364 (1038)
..+-....+ ++-.-..|....-+.|+-++...+...+.+. ..--.++.......-.+.+|+++|.+....
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 665433321 2223334444444556655554444433221 011122333333344567788888777654
Q ss_pred CCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001645 365 EISMDRDHFET-LVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYT 443 (1038)
Q Consensus 365 ~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 443 (1038)
+. +....|. +.-+|.+..-++-+.++++-..+.-+.+..+-|.......+.-+-..|.+-..++.+.+-.. |-
T Consensus 181 n~--ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~ 254 (557)
T KOG3785|consen 181 NP--EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP 254 (557)
T ss_pred Ch--hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch
Confidence 32 2333332 33446677777777777777777766666666666665555444444444444444433211 10
Q ss_pred HHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 444 ELMQHLFKL-----NEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCM 500 (1038)
Q Consensus 444 ~ll~~~~~~-----~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (1038)
.+.-+++. +.-+.|.+++--+.+. .|.. -..|+-.|.+.+++.+|..+.+++
T Consensus 255 -f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 255 -FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred -hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhc
Confidence 11111221 2345555555555443 2222 223444566666666666665544
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=4.6e-06 Score=84.65 Aligned_cols=203 Identities=11% Similarity=0.082 Sum_probs=122.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcC---CChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 001645 726 TIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKG---RKVDHAIKIFQEMVNAGHIPDK-ELVETYL 801 (1038)
Q Consensus 726 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~A~~~~~~m~~~~~~~d~-~~~~~li 801 (1038)
-.++-.|.+.+++.+|..+.+++.- ..|-......++.+..+... ..+.-|...|+-.-+++..-|. .--.++.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 3455567777888888777766531 12222222222222221111 1344566666555455444332 1223455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHH
Q 001645 802 DCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFG-SLIHGLVQRGQIE 880 (1038)
Q Consensus 802 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~ 880 (1038)
.++.-..++++....++.+..-...+..---.+..+++..|.+.+|.++|-++....++ |..+|. .+.++|.++++++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 55566667777777777777666555444456788888999999999999777654333 455554 4557778889999
Q ss_pred HHHHHHHHHHHcCCCccHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 001645 881 EALAKVETMKQAGIYPTVHVYT-SFVVHFFREKQVGRALEIFERMRQEGCEPTVVTY 936 (1038)
Q Consensus 881 ~A~~~~~~m~~~g~~p~~~~y~-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 936 (1038)
-|+.++-.+. -+.+..+.- .+.+-|.+.+.+=-|-+.|+.+... .|++..|
T Consensus 446 lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 446 LAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 8877765543 234444444 3446777888887788888777653 6777666
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.8e-05 Score=86.40 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=100.9
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCccHhhHHHHHHHHHhcCCH
Q 001645 843 ELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVE--------TMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 843 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
.+.+|.+++....+....-.....-.++......|+++.|+.++. .+.+.+..|-.+ .+++..|.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 567778888777665333334555666677778899999998888 566655556554 4566667777777
Q ss_pred HHHHHHHHHHHHc--CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001645 915 GRALEIFERMRQE--GCEPTVVTYTA----LIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEAL 988 (1038)
Q Consensus 915 ~~A~~~~~~m~~~--g~~pd~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 988 (1038)
+.|..++.+.... .-.+....... +...-.+.|+-++|..+++++.+.++. |..+...++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHH
Confidence 7777777766532 11222233333 333344779999999999999998776 888999999999876 467787
Q ss_pred HHHHHH
Q 001645 989 ELLSEM 994 (1038)
Q Consensus 989 ~l~~~m 994 (1038)
.+-+.+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 776554
No 75
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.07 E-value=3.8e-05 Score=88.51 Aligned_cols=247 Identities=13% Similarity=0.022 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCChhhH
Q 001645 685 HSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKAN----GCNPSGSTY 760 (1038)
Q Consensus 685 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~ 760 (1038)
.+..+|..+...+.+..+++.|...|...+.-.+. +...|-.....-...|+.-++..+|..-.+. |--|+-.-|
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 34456666777778889999999999988876554 7777877777777788888888888873322 222222221
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCc
Q 001645 761 KYLIISLSGRKGRKVDHAIKIFQEMVNA---------GHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRK---VGFTVP 828 (1038)
Q Consensus 761 ~~ll~~~~~~~~~~~~~A~~~~~~m~~~---------~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 828 (1038)
........ .+|++++-+...+.+... +...+...|.......-..+.+..|......+.. ... +.
T Consensus 927 ~c~te~h~--~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~-d~ 1003 (1238)
T KOG1127|consen 927 LCATEIHL--QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKL-DE 1003 (1238)
T ss_pred HHHHHHHH--hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 11111111 233444444333332221 2233445566555555556666655555443221 111 11
Q ss_pred chHH----HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcc-HhhHH
Q 001645 829 LSYS----LYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQA-GIYPT-VHVYT 902 (1038)
Q Consensus 829 ~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~y~ 902 (1038)
..|+ .+.+.++..|.++.|..-+...... .+...-.+-+.. .-.++++++++.|++.... +-..+ ++...
T Consensus 1004 sqynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~ 1079 (1238)
T KOG1127|consen 1004 SQYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLC 1079 (1238)
T ss_pred hhhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhH
Confidence 2233 3344455566666555444332211 111111111222 3457788888888887651 11233 23444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001645 903 SFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALI 940 (1038)
Q Consensus 903 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 940 (1038)
.++-.....+..+.|...+-+..... +|+..+.-+|-
T Consensus 1080 kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~ 1116 (1238)
T KOG1127|consen 1080 KVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLP 1116 (1238)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHH
Confidence 45555566777777777776666542 45555444443
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=9.3e-08 Score=99.85 Aligned_cols=198 Identities=12% Similarity=0.118 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001645 195 TETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRS 274 (1038)
Q Consensus 195 ~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 274 (1038)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4566677777778888888888888777654 5566777777777788888888888887777654 3345566677777
Q ss_pred HHcCCChhHHHHHHHHHHhCCCc-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 001645 275 LCNAGKGDIALEFYKEMAQKEMV-LDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIRE 353 (1038)
Q Consensus 275 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 353 (1038)
+...|++++|.+.+++..+.... .....+..+..++...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777654221 1233444555556666666666666666555321 122334455555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001645 354 ALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIM 396 (1038)
Q Consensus 354 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (1038)
|.+.+++.... ...+...+..+...+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555444 1223344444445555555555555554444
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=2.9e-08 Score=99.17 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=138.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001645 306 VMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGR 385 (1038)
Q Consensus 306 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 385 (1038)
+.++|.+.|-+.+|++.|+.-... .|-+.||..+-++|.+..+.+.|+.++.+-.+.-+. |+....-+.+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHHHh
Confidence 334444444444444444433331 233344444555555555555555555554443221 33333445555666667
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001645 386 ISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEM 465 (1038)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m 465 (1038)
.++|.++++...+..+.+.....++..+|.-.++++-|+.+++++.+.|+. ++..|+.+.-+|...++++-++.-|.+.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 777777777777766666666666667777777777777777777777754 5666777777777777777777777777
Q ss_pred HHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001645 466 LKRGIQPDS--VAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 466 ~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
+..--.|+. .+|-.|-...+..||+.-|.+.|+-....+.. +..+++.|.-.-.+.|+.++|..++.....
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 665443443 35666666667777777777777777665432 556677776666777777777777776544
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.96 E-value=9.5e-07 Score=98.85 Aligned_cols=243 Identities=18% Similarity=0.147 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 001645 722 PDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKE-LVETY 800 (1038)
Q Consensus 722 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~-~~~~l 800 (1038)
..+...+...|...|+++.|..+++..++. ++...+ . ..|+.. +.+.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~---------------l~k~~G-~---------------~hl~va~~l~~~ 247 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI---------------LEKTSG-L---------------KHLVVASMLNIL 247 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------------HHHccC-c---------------cCHHHHHHHHHH
Confidence 345556888999999999999999887763 111111 0 011111 11245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCCc---chHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC-CCCHH-H
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKV-----GFTVP---LSYSLYIRALCRAGELEEALALLDEVKEE-----RS-KLDEF-V 865 (1038)
Q Consensus 801 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-t 865 (1038)
...|...+++++|..+|+.+... |..++ .+++.|..+|.+.|++++|...+++..+- |. .|.+. .
T Consensus 248 a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 248 ALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 56677777777777777766532 23332 56777788888888888888777776541 21 22332 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCc----cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-
Q 001645 866 FGSLIHGLVQRGQIEEALAKVETMKQ---AGIYP----TVHVYTSFVVHFFREKQVGRALEIFERMRQE-----G-CEP- 931 (1038)
Q Consensus 866 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p----~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p- 931 (1038)
++.+...|+..+++++|..+++...+ .-+.+ -..+|+.|...|...|++++|.++|++.++. | ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 56677778888999999998887654 11222 2467899999999999999999999998753 1 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 932 TVVTYTALIQGFANLGKVAEAWDVFYRMKI----KGPF-PD-FRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 932 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
....++.|...|.+.+++.+|.++|.+... .|+. |+ ..+|..|+..|...|++++|.++.+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 256678899999999999999999887654 2332 23 3678999999999999999999988776
No 79
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=9.5e-05 Score=83.19 Aligned_cols=222 Identities=16% Similarity=0.206 Sum_probs=138.8
Q ss_pred chhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------C-CCC-CHHHHHHHHHHHHhcC
Q 001645 175 PHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEIN--------S-CAK-NIKTWTILVSLYGKAK 244 (1038)
Q Consensus 175 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~--------~-~~~-~~~~~~~li~~~~~~g 244 (1038)
-+.|++-...++ +...|..|.+.|.+.++++-|.-.+-.|... . -.+ +..+- +.-.-...|
T Consensus 744 MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak--vAvLAieLg 814 (1416)
T KOG3617|consen 744 MDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK--VAVLAIELG 814 (1416)
T ss_pred HHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH--HHHHHHHHh
Confidence 345555555553 5678999999999998888877666555321 0 012 12222 222234679
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001645 245 LIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIAD 324 (1038)
Q Consensus 245 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 324 (1038)
.+++|+.+|++-++. ..|=..|-..|.+++|.++-+.=-+-.+ ..||......+-..+|.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999988743 4455566778999999988655333222 2466666666777788888888887
Q ss_pred HHHH----------cC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001645 325 DMVR----------IS---------QIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGR 385 (1038)
Q Consensus 325 ~m~~----------~~---------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 385 (1038)
+.-. .. ...|...|.....-+-..|+.+.|+.+|...+ -|-++++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccC
Confidence 6321 10 01122223333333334566666666665433 35566777777888
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 001645 386 ISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMK 431 (1038)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (1038)
.++|-++-++- .+..+...+...|-..|++.+|..+|.+..
T Consensus 954 ~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 954 TDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88887776542 233456678888888888888888887654
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=3.7e-07 Score=98.24 Aligned_cols=231 Identities=15% Similarity=0.122 Sum_probs=152.5
Q ss_pred ChHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHH
Q 001645 774 KVDHAIKIFQEMVNAGH-IPD--KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALAL 850 (1038)
Q Consensus 774 ~~~~A~~~~~~m~~~~~-~~d--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 850 (1038)
..+.++..+.+++.... .|+ ...+..+...|...|+.++|...|+...+..+..+..|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555556656554321 222 234556666788888888888888888888888888888888889999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 851 LDEVKEERSKL-DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC 929 (1038)
Q Consensus 851 ~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 929 (1038)
|++..+. .| +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++.... .
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 9888874 34 4567777888888889999999988888764 333221222222334567788898888765543 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001645 930 EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK-------GPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS 1002 (1038)
Q Consensus 930 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 1002 (1038)
.|+...+ .+ .....|+..++ +.++.+.+. ++. ...+|..++..|.+.|++++|+..|++..+.+ .|+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 3333222 22 22334555443 344444321 112 34678888999999999999999999888643 357
Q ss_pred hhcHHHHHHHHhc
Q 001645 1003 NINFRTIFFGLNR 1015 (1038)
Q Consensus 1003 ~~~~~~l~~~~~~ 1015 (1038)
.+.++..+--+.+
T Consensus 270 ~~e~~~~~~e~~~ 282 (296)
T PRK11189 270 FVEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 7777765554433
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=9.6e-08 Score=95.54 Aligned_cols=223 Identities=13% Similarity=0.029 Sum_probs=169.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHH
Q 001645 773 RKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLD 852 (1038)
Q Consensus 773 ~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 852 (1038)
|-+.+|.+.++..++.-.. +.+|..|..+|.+.++...|..++..-.+..|.+.....-..+.+-..++.++|+++++
T Consensus 237 gm~r~AekqlqssL~q~~~--~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk 314 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFPH--PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYK 314 (478)
T ss_pred cChhhhHHHHHHHhhcCCc--hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHH
Confidence 4666666666666655333 33555566777777777777777777777766655555666777777888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001645 853 EVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT 932 (1038)
Q Consensus 853 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 932 (1038)
...+. .+.++....++..+|.-.+++|.|+.+++++.+.|+ .+...|+.+.-+|.-.++++-++.-|++.+..--.|+
T Consensus 315 ~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 315 LVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred HHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence 88875 234566677777888888899999999999988884 5667788888888888899999998888876533343
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001645 933 --VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS 1002 (1038)
Q Consensus 933 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 1002 (1038)
..+|..|....+..|++.-|.+-|+-....+.. +..++|.|...-.+.|+.++|..+++.... +.|+
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 456778877788889999999999988887776 778899998888899999999999888765 4454
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=6.7e-07 Score=86.06 Aligned_cols=208 Identities=14% Similarity=0.065 Sum_probs=173.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001645 797 VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQR 876 (1038)
Q Consensus 797 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 876 (1038)
..-+.-.|.+.|+...|+.-+++.++.++....+|..+...|.+.|+.+.|.+.|++.... -+-+....|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHHhC
Confidence 3456678999999999999999999999999999999999999999999999999999885 233566788888999999
Q ss_pred CCHHHHHHHHHHHHHc-CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 877 GQIEEALAKVETMKQA-GIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDV 955 (1038)
Q Consensus 877 g~~~~A~~~~~~m~~~-g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 955 (1038)
|++++|...|++.... ...--..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++..|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 9999999999998863 233345778888888899999999999999998752 23456777888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHH
Q 001645 956 FYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTI 1009 (1038)
Q Consensus 956 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 1009 (1038)
++.....+. ++..+....|..-...|+-+.|-+.=..+.. ..|....+-..
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 999988877 6888988889999999998888776666654 46766655443
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=1.4e-06 Score=98.89 Aligned_cols=317 Identities=13% Similarity=0.117 Sum_probs=205.0
Q ss_pred HHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----h
Q 001645 695 KTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSG----R 770 (1038)
Q Consensus 695 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 770 (1038)
..+...|++++|.+.++.-... +.-...........+.+.|+.++|..+|..+++. .|+...|...+..+.. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 3456778999999988775443 2223455566777888899999999999999886 5787777777666652 1
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHH
Q 001645 771 KGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQ-LAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALA 849 (1038)
Q Consensus 771 ~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 849 (1038)
...+.+....+|+++...-...+..- .+.-.+.....+. .+...+......|+ |..++.|-..|....+..-..+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~--rl~L~~~~g~~F~~~~~~yl~~~l~Kgv--PslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPR--RLPLDFLEGDEFKERLDEYLRPQLRKGV--PSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchh--HhhcccCCHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHcChhHHHHHHH
Confidence 22356777888888876543322221 1111111111222 34444555666663 5667777777776666665666
Q ss_pred HHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HhhHHHHHHHHHhcC
Q 001645 850 LLDEVKEE----R----------SKLDEF--VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPT-VHVYTSFVVHFFREK 912 (1038)
Q Consensus 850 ~~~~m~~~----g----------~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g 912 (1038)
++...... | -.|+.. ++.-+...|...|++++|+.++++..+. .|+ +..|..-...|-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 66665432 1 134443 3355566677889999999999988875 455 677788888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHH----HH--HHHHHHHHhcCCh
Q 001645 913 QVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP--DFR----TY--SMFIGCLCKVGKS 984 (1038)
Q Consensus 913 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~----~~--~~l~~~~~~~g~~ 984 (1038)
++.+|.+.++...+.. .-|.+.-+-.+..+.++|++++|.+++......+..| |.. .| .-.+.+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999998888753 3466666667777789999999999988887665322 211 22 3446778889998
Q ss_pred HHHHHHHHHHHHC--CCC----------CChhcHHHHHHHHhccCChhh
Q 001645 985 EEALELLSEMTES--GIV----------PSNINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 985 ~~A~~l~~~m~~~--g~~----------p~~~~~~~l~~~~~~~g~~~~ 1021 (1038)
..|++.|..+.+. .+. -...|+++.++.+..++++..
T Consensus 322 ~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~ 370 (517)
T PF12569_consen 322 GLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRS 370 (517)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 8888877766531 111 133556666666666554443
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7.3e-05 Score=77.91 Aligned_cols=273 Identities=12% Similarity=0.058 Sum_probs=192.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 001645 719 LITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVE 798 (1038)
Q Consensus 719 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~ 798 (1038)
+-|+.....+...+...|+..+|...|+..+-. .|+..+-.-+...+.. ..|+.+....+...+....- -+..-|-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~~-~ta~~wf 304 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG-QEGGCEQDSALMDYLFAKVK-YTASHWF 304 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH-hccCHhhHHHHHHHHHhhhh-cchhhhh
Confidence 347778888888888999999999999887753 5555544333333343 33477777777777655431 1111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 799 TYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQ 878 (1038)
Q Consensus 799 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 878 (1038)
--...+...+++..|..+-.+..+..+.+...+-.-...+...|++++|.-.|...+.. -+-+...|..|++.|...|+
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhch
Confidence 12233445678888888888888888777777777778888899999999999988774 23467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCccHhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 001645 879 IEEALAKVETMKQAGIYPTVHVYTSFV-VHFF-REKQVGRALEIFERMRQEGCEPTV-VTYTALIQGFANLGKVAEAWDV 955 (1038)
Q Consensus 879 ~~~A~~~~~~m~~~g~~p~~~~y~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~~ 955 (1038)
+.||..+-+...+. ++.+..+.+.+. ..|. .-.--++|.+++++-+. +.|+- ...+.+...|...|+.+.++.+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 99988776665542 234444444442 2222 22235788888888775 36764 3456677788889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 001645 956 FYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSN 1003 (1038)
Q Consensus 956 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 1003 (1038)
+++.... .||....+.|.+.+...+.+.+|++.|...+. +.|+.
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 9987764 56888899999999999999999999888775 45644
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=3.9e-06 Score=95.32 Aligned_cols=295 Identities=15% Similarity=0.091 Sum_probs=150.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-
Q 001645 200 TMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNA- 278 (1038)
Q Consensus 200 ~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~- 278 (1038)
....++...|++++|.+.++.-... +.............+.+.|+.++|..+|..+.+.+ +.|..-|..+..++.-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 3445667778888888888765433 24445566667777778888888888888888774 33333444444444222
Q ss_pred ----CChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 001645 279 ----GKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREA 354 (1038)
Q Consensus 279 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 354 (1038)
.+.+...++|+++...- |.......+.-.+..-.++. ..+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~----------------------------------~~~ 130 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFK----------------------------------ERL 130 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHH----------------------------------HHH
Confidence 23455566666665542 22222211111111111111 112
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCh--hhHHHHHHHHhcc
Q 001645 355 LEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRR---------------NLVDG--KIYGIIIGGYLRK 417 (1038)
Q Consensus 355 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~--~~~~~li~~~~~~ 417 (1038)
..++..+..+|++ .+|+.|-..|....+.+-...++...... .+++. .++..+...|-..
T Consensus 131 ~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 131 DEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 2223333333332 23333333333333333333333332211 01111 2334445555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 418 NDLSKALVQFERMKESGYLPM-ASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKV 496 (1038)
Q Consensus 418 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 496 (1038)
|++++|++++++..+. .|+ +..|..-...+-+.|++.+|.+.++...+.... |-..=+..+..+.++|++++|.++
T Consensus 208 g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred CCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666655554 233 445555555666666666666666666555422 555555556666666666666666
Q ss_pred HHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 497 FKCMEDKGIRPTRK------SY--SVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 497 ~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
+......+..|... .| .....+|.+.|++..|++.|....+.
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66665544322111 12 23346677777777777777666543
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.88 E-value=0.00036 Score=77.57 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=105.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 001645 205 AGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIA 284 (1038)
Q Consensus 205 l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 284 (1038)
+...|+++.|..-|-+.. .....|.+-.....|.+|+.+++.+.+.. .-+..|..+..-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHH
Confidence 334456666655443332 12233455556677778888777776542 2233466667777777888888
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 285 LEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSK 364 (1038)
Q Consensus 285 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 364 (1038)
+++|-+. ..++-.|.+|.+.|+++.|.++-.+.. |.......|..-..-+-+.|++.+|.++|-.+-.
T Consensus 785 e~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~- 852 (1636)
T KOG3616|consen 785 EELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE- 852 (1636)
T ss_pred HHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-
Confidence 7777543 245666777778888877777665542 2333444465555666667777777666543221
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 001645 365 EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQF 427 (1038)
Q Consensus 365 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 427 (1038)
|+ ..|.+|-+.|..|+..++.++-..... ..+...+..-|-..|++..|..-|
T Consensus 853 ---p~-----~aiqmydk~~~~ddmirlv~k~h~d~l--~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 853 ---PD-----KAIQMYDKHGLDDDMIRLVEKHHGDHL--HDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred ---ch-----HHHHHHHhhCcchHHHHHHHHhChhhh--hHHHHHHHHHHHhccChhHHHHHH
Confidence 11 235566666666666665544321111 123334444444455555554444
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=7.1e-05 Score=81.85 Aligned_cols=52 Identities=21% Similarity=0.097 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 001645 236 LVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFY 288 (1038)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 288 (1038)
=++.+...|++++|+..-.++...+ +-|...+..=+-++.+.+++++|+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~i 69 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLI 69 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHH
Confidence 3455666777777777777776554 444555666666667777777776443
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.82 E-value=7.4e-07 Score=99.69 Aligned_cols=232 Identities=14% Similarity=0.128 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC---cchHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC-C
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKV-----GFTV---PLSYSLYIRALCRAGELEEALALLDEVKEE-----RS-K 860 (1038)
Q Consensus 795 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 860 (1038)
.+...+..+|...|+++.|..++....+. |... ....+.+...|...+++.+|..+|+++..- |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445888999999999999999877665 2222 234567788999999999999999998762 21 2
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-CccH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC
Q 001645 861 LD-EFVFGSLIHGLVQRGQIEEALAKVETMKQ-----AGI-YPTV-HVYTSFVVHFFREKQVGRALEIFERMRQE---GC 929 (1038)
Q Consensus 861 p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 929 (1038)
|. ..+++.|..+|.+.|++++|...++...+ .|. .|.+ ..++.+...|+..+++++|..++.+..+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 34688888899999999999988887654 222 2333 34667888899999999999999987653 12
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH---
Q 001645 930 EPT----VVTYTALIQGFANLGKVAEAWDVFYRMKIKG----P--FP-DFRTYSMFIGCLCKVGKSEEALELLSEMT--- 995 (1038)
Q Consensus 930 ~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~A~~l~~~m~--- 995 (1038)
.++ ..+++.|...|.+.|++++|.++++++++.. . .+ ....++.|...|.+.+++++|.++|.+-.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 233 4578999999999999999999999988641 1 11 24678899999999999999999998854
Q ss_pred -HCCCC-C-ChhcHHHHHHHHhccCChhhhhcCC
Q 001645 996 -ESGIV-P-SNINFRTIFFGLNREDNLYQITKRP 1026 (1038)
Q Consensus 996 -~~g~~-p-~~~~~~~l~~~~~~~g~~~~~~~~~ 1026 (1038)
..|.. | ...+|..|...|.+.|++|++.+.-
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 33322 3 3578999999999999999965543
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=0.00011 Score=76.58 Aligned_cols=289 Identities=12% Similarity=0.020 Sum_probs=215.2
Q ss_pred hhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001645 667 GSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFE 746 (1038)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 746 (1038)
...+...+-......-++.+......+.+.+...|+..+|...|+...-.++. +..........+.+.|+.+..-.+..
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 34455555566667778888899999999999999999999999988765322 22222223445567899998888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 747 DMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFT 826 (1038)
Q Consensus 747 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 826 (1038)
.+.... +-....|. +.++.....++++.|+.+-+..++.+.. +...+-.-...+...|+.++|.-.|+......|.
T Consensus 291 ~Lf~~~-~~ta~~wf--V~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 291 YLFAKV-KYTASHWF--VHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred HHHhhh-hcchhhhh--hhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 777531 11222222 2222222345899999999988876532 2334444456778899999999999999998888
Q ss_pred CcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCcc-HhhHHH
Q 001645 827 VPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLI-HGLVQ-RGQIEEALAKVETMKQAGIYPT-VHVYTS 903 (1038)
Q Consensus 827 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li-~~~~~-~g~~~~A~~~~~~m~~~g~~p~-~~~y~~ 903 (1038)
.-.+|.-|+..|...|++.||.-+-++.... +.-+..+.+.+. ..|.- ..--++|..++++-.+. .|+ ....+.
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~ 443 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNL 443 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHH
Confidence 8889999999999999999999988877664 445666666553 33332 23347888888877653 454 456677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 904 FVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 904 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+...|...|..++++.++++.+.. .||....+.|.+.+.....+.+|+..|......+|.
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 888999999999999999999874 799999999999999999999999999999888776
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=3.1e-06 Score=81.59 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=168.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhcc
Q 001645 338 YGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRK 417 (1038)
Q Consensus 338 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 417 (1038)
...+.-+|...|+...|.+-+++.++..+. +..++..+...|.+.|+.+.|.+-|++..+..+.+..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 455667888999999999999998887666 6788999999999999999999999999999998888899999999999
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 418 NDLSKALVQFERMKESGY-LPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKV 496 (1038)
Q Consensus 418 g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 496 (1038)
|++++|...|++....-. .--..||..+.-+..+.|+.+.|...|++.++.... ...+.-.+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 999999999999887632 223567888888888999999999999999987432 455677788889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 497 FKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 497 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
++.....+. ++..+.-..|+.--+.|+.+.+-++=.++...
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999888776 78888888888888899998888877777653
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=2.3e-05 Score=87.76 Aligned_cols=306 Identities=15% Similarity=0.035 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHH-
Q 001645 687 SATYNMAIKTAGRGKDFKHMRNLFYEMRRNGY-LITPD-TWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGS-TYKY- 762 (1038)
Q Consensus 687 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~- 762 (1038)
...|..+...+...++.+.+...+....+... .++.. ........+...|++++|.+.+++..+. .|+.. .+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHh
Confidence 34555556666667777777666666544322 22322 2222344566789999999999998876 45443 2221
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHc
Q 001645 763 LIISLSGRKGRKVDHAIKIFQEMVNAGHIPD-KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRA 841 (1038)
Q Consensus 763 ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 841 (1038)
+.........+..+.+...+.. .....|+ ......+...+...|++++|...++...+..+.++..+..+...|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 0111111123455566665554 2223343 344456677889999999999999999999998888899999999999
Q ss_pred CCHhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHhhH-H--HHHHHHHhcCCH
Q 001645 842 GELEEALALLDEVKEERS-KLDE--FVFGSLIHGLVQRGQIEEALAKVETMKQAGI-YPTVHVY-T--SFVVHFFREKQV 914 (1038)
Q Consensus 842 g~~~~A~~~~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~y-~--~li~~~~~~g~~ 914 (1038)
|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999999887532 2333 3455788889999999999999999864321 1112111 1 333444445543
Q ss_pred HHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhc
Q 001645 915 GRALEIFERMRQE--GCEPT---VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF--------PDFRTYSMFIGCLCKV 981 (1038)
Q Consensus 915 ~~A~~~~~~m~~~--g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~~~~~l~~~~~~~ 981 (1038)
..+.+. +.+... ...|+ .........++...|+.++|.++++.+....-. ...........++...
T Consensus 242 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 332222 222211 00011 122235667778999999999999988763211 1234445556667899
Q ss_pred CChHHHHHHHHHHHHC
Q 001645 982 GKSEEALELLSEMTES 997 (1038)
Q Consensus 982 g~~~~A~~l~~~m~~~ 997 (1038)
|++++|.+.+.+....
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988753
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.77 E-value=4e-06 Score=90.21 Aligned_cols=229 Identities=13% Similarity=0.029 Sum_probs=148.6
Q ss_pred CChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 736 GLTEMAMRVFEDMKANG-CNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAK 814 (1038)
Q Consensus 736 g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 814 (1038)
+..+.++.-+.+++... ..|+...-.....+......|+.++|...|++.++... .+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666666431 22222111111112222244578888888887777643 34677888888899999999999
Q ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 815 SCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI 894 (1038)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 894 (1038)
..|+...+..+....+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 9999999888888888888999999999999999999998885 4543322222333445678999999997655332
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001645 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQE---G--CEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDF 968 (1038)
Q Consensus 895 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 968 (1038)
.|+...+ .+ .....|+...+ +.++.+.+. . +.| ....|..+...+.+.|++++|...|++..+.++. |.
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~ 270 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NF 270 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hH
Confidence 3333222 22 22335555444 345555432 1 111 2357889999999999999999999999988765 55
Q ss_pred HHHHH
Q 001645 969 RTYSM 973 (1038)
Q Consensus 969 ~~~~~ 973 (1038)
+-+..
T Consensus 271 ~e~~~ 275 (296)
T PRK11189 271 VEHRY 275 (296)
T ss_pred HHHHH
Confidence 44443
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=0.00059 Score=79.10 Aligned_cols=183 Identities=14% Similarity=0.090 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 001645 350 RIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFER 429 (1038)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (1038)
+...|+..|-+.....+. =...|..|...|+...+...|...|++..+-+..+...+....+.|+...+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 355565555544443332 2457888999999988999999999999999888888899999999999999999988433
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001645 430 MKESGY-LPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPT 508 (1038)
Q Consensus 430 m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 508 (1038)
.-+... ..-...|...--.+.+.++...+..-|+..++.. +-|...|..+..+|..+|.+..|.++|.+..... |+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 322210 0011122223334567788888888888888775 3377889999999999999999999998877652 33
Q ss_pred HHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 001645 509 RKSYSVF--IKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 509 ~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
. .|... ....|..|++.+|+..+.....
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 23222 2235678899999888877654
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=3.1e-05 Score=76.97 Aligned_cols=196 Identities=10% Similarity=0.052 Sum_probs=132.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhc
Q 001645 337 AYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLR 416 (1038)
Q Consensus 337 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 416 (1038)
-+.+.+..+.+..+++.|++++....+...+ +....+.|..+|....++..|-..++.+....+.-..-----...+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 3566666677778888888888777666544 566777788888888888888888888776555422211222445566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 417 KNDLSKALVQFERMKESGYLPMASTYTELMQH--LFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAW 494 (1038)
Q Consensus 417 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 494 (1038)
.+.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++.... .+..+.+.......+.|++++|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence 77888888888777653 222221112222 23456777777777765532 24555566666677899999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001645 495 KVFKCMEDK-GIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIV 541 (1038)
Q Consensus 495 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (1038)
+-|+...+- |.. ....|+..+ +..+.++++.|++...++++.|++
T Consensus 165 qkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 999988765 554 456777654 456778999999999999988764
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=0.0001 Score=82.54 Aligned_cols=198 Identities=11% Similarity=0.018 Sum_probs=106.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHh
Q 001645 340 CVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVD----GKIYGIIIGGYL 415 (1038)
Q Consensus 340 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~ 415 (1038)
.+...+...|++++|.+.+++..+..+. +...+..+...|...|++++|...+++.....+.+ ...|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3445556667777777777766665433 45556666666777777777777776666544321 123445666677
Q ss_pred ccCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCChhHHHHH--HHHH-HHCCC-CCCHHHHHHHHHHHHhc
Q 001645 416 RKNDLSKALVQFERMKESGY-LPMASTY-T--ELMQHLFKLNEYKKGCEL--YNEM-LKRGI-QPDSVAVTAMVAGHVRQ 487 (1038)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~~~~~~~~~~~a~~l--~~~m-~~~g~-~p~~~~~~~li~~~~~~ 487 (1038)
..|++++|+.++++...... .+..... + .++..+...|....+.+. +... ..... ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 77777777777777643321 1111111 1 222222333332322222 1111 11100 11122223566677888
Q ss_pred CCHHHHHHHHHHHHhCCCCC---C---HHHHHHHH--HHHHhcCCHHHHHHHHHHHHhC
Q 001645 488 DNLSEAWKVFKCMEDKGIRP---T---RKSYSVFI--KELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 488 g~~~~A~~~~~~m~~~g~~p---~---~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
|+.+.|...++.+......+ . ...-..++ -++...|+.++|.+.+......
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999998876532110 0 11122222 3346789999999998887653
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=0.00023 Score=70.95 Aligned_cols=289 Identities=11% Similarity=0.032 Sum_probs=177.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHH
Q 001645 198 YNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVL-VRSLC 276 (1038)
Q Consensus 198 ~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 276 (1038)
+.+++..+.+..++..|.+++..-.++. +.+....+.|..+|-...++..|-..++.+... .|...-|... ...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5566666777888888888888877765 557777888888888888888888888888765 4554444322 34556
Q ss_pred cCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 001645 277 NAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNC--AAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREA 354 (1038)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 354 (1038)
+.+.+..|+.+...|... |+...-..-+.+ ....+|+..+..+.++.-.. .+..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 777888888888777653 222222222222 33457777777777655321 2233344444445677888888
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------------h---------------
Q 001645 355 LEFIRNLKSK-EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVD--------------G--------------- 404 (1038)
Q Consensus 355 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------------~--------------- 404 (1038)
.+-|+...+- |.. ....|+.-+..| +.|+++.|++...++.++|..+ .
T Consensus 164 vqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 8888876664 444 455677666544 5678888888888777665421 0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001645 405 KIYGIIIGGYLRKNDLSKALVQFERMKES-GYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAG 483 (1038)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 483 (1038)
.++|.-...+.+.++++.|.+.+.+|.-. .-..|++|...+.-.- ..+++.+..+-+..+++... -...|+..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 12333334455667777777777776533 2345666655543221 22445555555555555533 234566666667
Q ss_pred HHhcCCHHHHHHHHHH
Q 001645 484 HVRQDNLSEAWKVFKC 499 (1038)
Q Consensus 484 ~~~~g~~~~A~~~~~~ 499 (1038)
||++.-++.|-+++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 7777777777766654
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=0.00047 Score=75.05 Aligned_cols=90 Identities=16% Similarity=-0.026 Sum_probs=56.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD-EFVFGSLIHGLVQRGQI 879 (1038)
Q Consensus 801 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~ 879 (1038)
...+.+.|++..|..-++++.+..|.+...|+....+|.+.|.+.+|++-.+...+. .|+ ...|.-=..++....++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777777777777777777777777666664 232 22233333333344556
Q ss_pred HHHHHHHHHHHHc
Q 001645 880 EEALAKVETMKQA 892 (1038)
Q Consensus 880 ~~A~~~~~~m~~~ 892 (1038)
+.|++.|++-.+.
T Consensus 443 dkAleay~eale~ 455 (539)
T KOG0548|consen 443 DKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666665554
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00095 Score=72.73 Aligned_cols=188 Identities=15% Similarity=0.126 Sum_probs=89.6
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-
Q 001645 691 NMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSG- 769 (1038)
Q Consensus 691 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 769 (1038)
..+.+..-+..+++.|.+-+....+.. -+..-++....+|...|.+.++...-....+.|.. ...-|+.+-.++..
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 445556666777888888887777655 25556666777888888887777766665554421 11112211111111
Q ss_pred ----hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHh
Q 001645 770 ----RKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELE 845 (1038)
Q Consensus 770 ----~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 845 (1038)
.+.++++.++..|.+.+.....||. ..++...+++........-.++.-..-...-...+.+.|++.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence 1223445555555554433333321 222233333333333322222221111111133444455555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 846 EALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQ 891 (1038)
Q Consensus 846 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 891 (1038)
.|+..|++++... +-|...|....-+|.+.|.+.+|+.-.+...+
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5555555555442 33444555555555555555555554444443
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.4e-07 Score=61.94 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 858 RSKLDEFVFGSLIHGLVQRGQIEEALAKVETM 889 (1038)
Q Consensus 858 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 889 (1038)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.43 E-value=3e-06 Score=89.73 Aligned_cols=150 Identities=23% Similarity=0.257 Sum_probs=95.7
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHh----c
Q 001645 836 RALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFR----E 911 (1038)
Q Consensus 836 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~----~ 911 (1038)
..+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..|.. ...|..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCc
Confidence 3445567777777776542 34555566677777778888888777777764 23322 2223333322 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHH
Q 001645 912 KQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKS-EEALEL 990 (1038)
Q Consensus 912 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~l 990 (1038)
..+.+|..+|+++.+. +.++..+.+.+..++...|++++|.+++++..+.++. |+.+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3577888888887654 4667777777777888888888888888887777666 677777777777777777 566677
Q ss_pred HHHHHH
Q 001645 991 LSEMTE 996 (1038)
Q Consensus 991 ~~~m~~ 996 (1038)
+.+++.
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 777764
No 101
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=0.00015 Score=78.00 Aligned_cols=191 Identities=12% Similarity=0.010 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCH--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001645 810 LQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGEL--EEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVE 887 (1038)
Q Consensus 810 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 887 (1038)
++++...++.+.+..+.+..+|+.....+.+.|+. ++++.+++++.+.. +-+..+|+-...++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444444444454444344444432 45555555555532 2345555555555555666666666666
Q ss_pred HHHHcCCCccHhhHHHHHHHHHhc---CC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHH
Q 001645 888 TMKQAGIYPTVHVYTSFVVHFFRE---KQ----VGRALEIFERMRQEGCEPTVVTYTALIQGFANL----GKVAEAWDVF 956 (1038)
Q Consensus 888 ~m~~~g~~p~~~~y~~li~~~~~~---g~----~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~----g~~~~A~~~~ 956 (1038)
++.+.+ +-|..+|+.....+.+. |. .++++++..+++... +-|...|+.+...+... ++..+|.+.+
T Consensus 167 ~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 665544 33444555444444332 11 245666665665542 23556666666666552 3445677777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC------------------ChHHHHHHHHHHHHCCCCCChhcH
Q 001645 957 YRMKIKGPFPDFRTYSMFIGCLCKVG------------------KSEEALELLSEMTESGIVPSNINF 1006 (1038)
Q Consensus 957 ~~m~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~l~~~m~~~g~~p~~~~~ 1006 (1038)
.+....++. ++.....|++.|+... ..++|.++++.+. ...|=...|
T Consensus 245 ~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~y 309 (320)
T PLN02789 245 LEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNY 309 (320)
T ss_pred HHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHH
Confidence 776666555 6677777778777532 2367888888773 344533333
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=2.9e-07 Score=61.52 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=16.0
Q ss_pred CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 893 GIYPTVHVYTSFVVHFFREKQVGRALEIFERM 924 (1038)
Q Consensus 893 g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 924 (1038)
|+.||.++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=3.2e-05 Score=77.28 Aligned_cols=164 Identities=10% Similarity=0.106 Sum_probs=118.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCH
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
+-.|...|+++......+.+.. |. ..+...++.+++...++...+.+ +.|...|..|...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567777777665443322211 11 01223566777777777777654 67888899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001645 915 GRALEIFERMRQEGCEPTVVTYTALIQGF-ANLGK--VAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELL 991 (1038)
Q Consensus 915 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~ 991 (1038)
++|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.++. +..++..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988753 33667777777764 67777 58999999999998888 8889999999999999999999999
Q ss_pred HHHHHCCCCCChhcHHHHHHHHhc
Q 001645 992 SEMTESGIVPSNINFRTIFFGLNR 1015 (1038)
Q Consensus 992 ~~m~~~g~~p~~~~~~~l~~~~~~ 1015 (1038)
+++.+. .|....-..+|.+...
T Consensus 168 ~~aL~l--~~~~~~r~~~i~~i~~ 189 (198)
T PRK10370 168 QKVLDL--NSPRVNRTQLVESINM 189 (198)
T ss_pred HHHHhh--CCCCccHHHHHHHHHH
Confidence 999863 3434455556555433
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00025 Score=76.42 Aligned_cols=199 Identities=18% Similarity=0.121 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 792 PDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIH 871 (1038)
Q Consensus 792 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 871 (1038)
||...+...+.+.........+...+.+..+ +.....+.-..-.+...|++++|+..++.+... .+-|...+.....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~ 348 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGD 348 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 4444444444444333333333333333333 122344444455667789999999999998875 3345555566778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 001645 872 GLVQRGQIEEALAKVETMKQAGIYPT-VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVA 950 (1038)
Q Consensus 872 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 950 (1038)
.+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|+..+|+.++++.... .+-|+..|..|..+|...|+..
T Consensus 349 i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 349 ILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchH
Confidence 888999999999999998875 455 566677888999999999999999998876 3568899999999999999887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhcHHHHHHHHh
Q 001645 951 EAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTES--GIVPSNINFRTIFFGLN 1014 (1038)
Q Consensus 951 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~l~~~~~ 1014 (1038)
+|... ..+.|...|+|++|+..+....+. .-.|++.-+...|+...
T Consensus 426 ~a~~A------------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 426 EALLA------------------RAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQLR 473 (484)
T ss_pred HHHHH------------------HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 76554 345577889999999998888764 22344444445555443
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.34 E-value=1.2e-05 Score=85.15 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=64.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHhccCCHHH
Q 001645 345 FCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDG--KIYGIIIGGYLRKNDLSK 422 (1038)
Q Consensus 345 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 422 (1038)
+...|++++|++++... .+.......+..|.+.+++|.|.+.++.|.+.+-.+. ....+.+..+.-.+.+.+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHH
Confidence 33445555555554321 1344444555555566666666666655554432211 111222222222234555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 001645 423 ALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNL-SEAWKVFKCME 501 (1038)
Q Consensus 423 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 501 (1038)
|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+.++... -+..+...++.+....|+. +.+.+++.++.
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 55555554432 334455555555555555555555555555444321 1333333344444444443 34444444444
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.33 E-value=0.0016 Score=83.14 Aligned_cols=334 Identities=9% Similarity=-0.004 Sum_probs=190.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCHH--HHHHHHHHHH
Q 001645 205 AGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGF------EPDAV--AYKVLVRSLC 276 (1038)
Q Consensus 205 l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--~~~~ll~~~~ 276 (1038)
+...|+++.+..+++.+.......+..........+...|++++|..++....+.-- .+... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566776666666553221112222233344455667888888888877654210 11111 1122233455
Q ss_pred cCCChhHHHHHHHHHHhCCCcCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---C--ChhhHHHHHHHHHh
Q 001645 277 NAGKGDIALEFYKEMAQKEMVLDL----SLYKIVMNCAAKLGDVDAVLSIADDMVRISQI---P--ERDAYGCVLKSFCV 347 (1038)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p--~~~~~~~ll~~~~~ 347 (1038)
..|+++.|...+++..+.-...+. ...+.+...+...|++++|...+++....... + ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 678888888888887653111121 23455666677788888888888877653211 1 11234455566777
Q ss_pred cCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-ChhhHHHHHHHHh
Q 001645 348 SMRIREALEFIRNLKS----KEIS--M-DRDHFETLVKGLCIAGRISDALEIVDIMMRR----NLV-DGKIYGIIIGGYL 415 (1038)
Q Consensus 348 ~g~~~~A~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~li~~~~ 415 (1038)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+++.... +.. ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888888776543 2211 1 1233445556677778888888888776442 111 1234455666777
Q ss_pred ccCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 001645 416 RKNDLSKALVQFERMKESG--YLPMAS--TY--TELMQHLFKLNEYKKGCELYNEMLKRGIQPD---SVAVTAMVAGHVR 486 (1038)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g--~~p~~~--t~--~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~---~~~~~~li~~~~~ 486 (1038)
..|+++.|.+.+.+..... ...... .. ...+..+...|+.+.|.+.+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8888888888887764421 111110 00 1112333456778888877766543211111 1113456667778
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 487 QDNLSEAWKVFKCMEDK----GIRPT-RKSYSVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 487 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
.|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888776542 32221 234555666777888888888888887654
No 107
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=0.00021 Score=76.79 Aligned_cols=208 Identities=10% Similarity=0.001 Sum_probs=161.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--H
Q 001645 804 LCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAG-ELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQI--E 880 (1038)
Q Consensus 804 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~--~ 880 (1038)
+...++.++|..+.+.+.+..+.+..+|+.....+...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 334567788899999999988888888888888888888 6899999999999863 34556777666666667763 6
Q ss_pred HHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 001645 881 EALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANL---GK----VAEAW 953 (1038)
Q Consensus 881 ~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~---g~----~~~A~ 953 (1038)
+++.+++.+.+.+ +-|..+|+....++...|+++++++.++++++.+ .-|...|+.....+.+. |. .+++.
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 7889998998765 5678999999999999999999999999999875 34566777666666554 22 35788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhcc
Q 001645 954 DVFYRMKIKGPFPDFRTYSMFIGCLCKV----GKSEEALELLSEMTESGIVPSNINFRTIFFGLNRE 1016 (1038)
Q Consensus 954 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~ 1016 (1038)
....+++...|. |..+|+.+..+|... ++..+|.+.+.+..+.+ ..+...+..|++.+...
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 888888888888 889999999999883 45577999988876532 23566778888888753
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.30 E-value=0.00025 Score=84.90 Aligned_cols=228 Identities=10% Similarity=0.049 Sum_probs=152.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKY-GFEP---DAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSL 302 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 302 (1038)
|-+...|..-|......+++++|.+++++.... +++- -.-.|.++++.-...|.-+...++|+++.+.. . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 445677777777777888888888888777632 1111 12356667766666677777777887776641 1 2346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 001645 303 YKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISM-DRDHFETLVKGLC 381 (1038)
Q Consensus 303 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 381 (1038)
|..|...|.+.+.+++|.++++.|.+.-. ....+|...+..+.++.+.+.|..++.+.++.-++- -.......+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 77777778888888888888888877532 445567777777777777778888877766543331 2344555666667
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhH
Q 001645 382 IAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMA--STYTELMQHLFKLNEYKK 457 (1038)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~ 457 (1038)
+.|+.+++..+|+......+.-...|+..|+.-.+.|+.+.+..+|++....++.|-- ..|...+..=-..|+-..
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 7888888888888888777776677888888888888888888888888777665532 334444443333344333
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=5.1e-05 Score=82.96 Aligned_cols=219 Identities=18% Similarity=0.104 Sum_probs=160.3
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHH
Q 001645 771 KGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALAL 850 (1038)
Q Consensus 771 ~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 850 (1038)
+.|++.+|.-.|+..++.++ -+...|..|...-...++-..|+..+....+..+.+..+.-.|.-.|...|.-.+|+.+
T Consensus 297 ~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 44567777777777776642 24566666666677777777888888888888888777778888888888888888888
Q ss_pred HHHHHHcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 001645 851 LDEVKEERSKL--------DEFVFGSLIHGLVQRGQIEEALAKVETMK-QAGIYPTVHVYTSFVVHFFREKQVGRALEIF 921 (1038)
Q Consensus 851 ~~~m~~~g~~p--------~~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~ 921 (1038)
|+..+....+- +...-+. ..+.....+....++|-++. +.+..+|..++..|.-.|--.|++++|++.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 88876542110 0000000 11112223344455555554 4555588888999999999999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 922 ERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 922 ~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+..+.. +| |..+||-|...++...+.++|+..|+++++..|. =+.++..|..+|...|.++||.+.|=+.+
T Consensus 454 ~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 454 EAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999975 56 6788999999999999999999999999997655 23455568889999999999999887754
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.28 E-value=0.0035 Score=79.99 Aligned_cols=203 Identities=13% Similarity=-0.035 Sum_probs=113.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCChhhH
Q 001645 690 YNMAIKTAGRGKDFKHMRNLFYEMRR----NGYL--I-TPDTWTIMMMQYGRAGLTEMAMRVFEDMKANG--CNPSGSTY 760 (1038)
Q Consensus 690 ~~~li~~~~~~~~~~~a~~l~~~m~~----~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~ 760 (1038)
+..+...+...|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+.....
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 34455566778888888888876644 2211 1 22334455556677799999998888776531 11222222
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHCCC--CCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc----h
Q 001645 761 KYLIISLSGRKGRKVDHAIKIFQEMVNAGH--IPDKE--L--VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPL----S 830 (1038)
Q Consensus 761 ~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~--~~d~~--~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~ 830 (1038)
.....+......|+.++|...+.+...... ..... . ....+..+...|+.+.|...+............ .
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 222122222345688888888877654211 11110 0 011123445567788877776654432211111 1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 831 YSLYIRALCRAGELEEALALLDEVKEE----RSKLD-EFVFGSLIHGLVQRGQIEEALAKVETMKQA 892 (1038)
Q Consensus 831 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 892 (1038)
+..+..++...|+.++|..++++.... |..++ ..++..+..++.+.|+.++|...+.+..+.
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666777788888888888776653 22221 234555666677788888888888777653
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.27 E-value=0.00015 Score=75.69 Aligned_cols=184 Identities=13% Similarity=0.081 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHH
Q 001645 794 KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVP---LSYSLYIRALCRAGELEEALALLDEVKEERSKLDE--FVFGS 868 (1038)
Q Consensus 794 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ 868 (1038)
...+-.+...+.+.|++++|...++.+.+..+.++ .++..+...+...|++++|+..++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 44555666677777888888888887777766554 35667777888888888888888888764321111 13444
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHHHHcCCCccH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001645 869 LIHGLVQR--------GQIEEALAKVETMKQAGIYPTV-HVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTAL 939 (1038)
Q Consensus 869 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 939 (1038)
+..++.+. |+.++|.+.|+.+.+. .|+. ..+..+..... ... ... .....+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HHHHHH
Confidence 44445443 6677777777777654 2332 22222211100 000 000 011255
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001645 940 IQGFANLGKVAEAWDVFYRMKIKGPF-P-DFRTYSMFIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 940 i~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
...|.+.|++.+|...+++..+..+. | ....+..++.+|.+.|++++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788999999999999999887543 2 4578889999999999999999998888753
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00014 Score=79.72 Aligned_cols=252 Identities=15% Similarity=0.101 Sum_probs=168.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHH
Q 001645 240 YGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAV 319 (1038)
Q Consensus 240 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 319 (1038)
+.+.|++.+|.-.|+...+.. +-+...|..|....+..++-..|+..+++..+.+.. |....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 446666777777777666553 345566777777667777766777777766665432 455666666667777777777
Q ss_pred HHHHHHHHHcCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001645 320 LSIADDMVRISQI--------PERDAYGCVLKSFCVSMRIREALEFIRNL-KSKEISMDRDHFETLVKGLCIAGRISDAL 390 (1038)
Q Consensus 320 ~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 390 (1038)
.+.++..+...+. ++...-.. +.+.....+....++|-++ ...+..+|+.++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777776553211 00000000 1222222333444454444 34454578888888888899999999999
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 001645 391 EIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMA-STYTELMQHLFKLNEYKKGCELYNEMLKR- 468 (1038)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~l~~~m~~~- 468 (1038)
..|+......+.+..+||.|...++...+.++|+..|.+.++. +|+- .....|.-+|...|.+++|...|-..+..
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998875 5552 33444566788999999998888766542
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 469 --------GIQPDSVAVTAMVAGHVRQDNLSEAWKVF 497 (1038)
Q Consensus 469 --------g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 497 (1038)
+..++...|..|=.++...++.+-+....
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 12334567777777777777777555544
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.26 E-value=0.0049 Score=63.14 Aligned_cols=292 Identities=14% Similarity=0.095 Sum_probs=150.0
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 001645 692 MAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIM---MMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLS 768 (1038)
Q Consensus 692 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 768 (1038)
.+.+.+...+.+..|..-|....+. |+..|-++ ...|...|+..-|+.-|.+.++. +||-..... -.+..
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi-QRg~v 115 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI-QRGVV 115 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH-Hhchh
Confidence 3444455556666666666666554 33333332 34555666666666666666553 455433221 11222
Q ss_pred hhcCCChHHHHHHHHHHHHCCCCCCH--H------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHH
Q 001645 769 GRKGRKVDHAIKIFQEMVNAGHIPDK--E------------LVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLY 834 (1038)
Q Consensus 769 ~~~~~~~~~A~~~~~~m~~~~~~~d~--~------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 834 (1038)
..+.|.+++|..-|+..++....... . .....+..+...|+...|+.....+++..+-+...|..-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 22445666666666666654332111 0 111123333444666666666666666555454555555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhh----HHHH------
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHV----YTSF------ 904 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----y~~l------ 904 (1038)
..+|...|++..|+.=+....+... -+..++--+-..+...|+.+.++...++..+. .||... |..|
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 6666666666666665555544321 22333333444555666666666666655542 344321 1111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 905 ---VVHFFREKQVGRALEIFERMRQEGCEPT--VVTYT---ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIG 976 (1038)
Q Consensus 905 ---i~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 976 (1038)
+......+++.++++-.+...+. .|. .+.|+ .+-.+|...|++.+|++.-.++.+..+. |..++---..
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHH
Confidence 11123345555555555555543 333 23332 2333444556677777777666665544 5666666666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 001645 977 CLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 977 ~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+|.-..++++|++=|+...+
T Consensus 350 A~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHh
Confidence 67666677777766666654
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.00028 Score=84.16 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=161.7
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 001645 686 SSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLII 765 (1038)
Q Consensus 686 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 765 (1038)
+...+..++..+...+++++|..+.+...+..+. ....|-.+...+.+.++..++..+ .+.+. .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~---------- 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDS--FS---------- 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhh--cc----------
Confidence 3566677777777777777777777755554433 233333333355555555554444 22221 11
Q ss_pred HHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHh
Q 001645 766 SLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELE 845 (1038)
Q Consensus 766 ~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 845 (1038)
...++.....++..|...+ -+...+.++..||.+.|+.++|..+++.+++.++.++.+.|.+...|... +++
T Consensus 95 -----~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 95 -----QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -----cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 1113333333333333322 22346677888888888888888888888888888888888888888888 888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 846 EALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMR 925 (1038)
Q Consensus 846 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 925 (1038)
+|++++.+.... +...+++..+..+|.++.... |+- ++.-.++.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHHHHHH
Confidence 888888777654 556667778888888877642 221 222223333333
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCh
Q 001645 926 QE-GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT-ESGIVPSN 1003 (1038)
Q Consensus 926 ~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~-~~g~~p~~ 1003 (1038)
.. |..--+.++--+-.-|....+++++..+++.+.+..+. |..+..-++.+|. +.+.. ...+++.. -.|+.-+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~ 290 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNR 290 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCC
Confidence 22 22334455555666777888899999999999998887 8888888888886 33333 34444433 23555554
Q ss_pred hcHHHHH
Q 001645 1004 INFRTIF 1010 (1038)
Q Consensus 1004 ~~~~~l~ 1010 (1038)
.++.--|
T Consensus 291 ~~~~~~i 297 (906)
T PRK14720 291 KPVKDCI 297 (906)
T ss_pred ccHHHHH
Confidence 4444333
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.00014 Score=81.77 Aligned_cols=219 Identities=14% Similarity=0.117 Sum_probs=111.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIV 306 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 306 (1038)
+|--..-..+...+.+.|-...|+.+|+++. .|..++.+|+..|+..+|.++..+-.+ -+||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3333444455566666677777777766654 555666666666666666666655555 24555556555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001645 307 MNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRI 386 (1038)
Q Consensus 307 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 386 (1038)
.+.....--++.|.++++.... + .-..+.......+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sa-----------------------------------r-------A~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISA-----------------------------------R-------AQRSLALLILSNKDF 501 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhH-----------------------------------H-------HHHhhccccccchhH
Confidence 5554333334445444443211 1 111111111224455
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001645 387 SDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPM-ASTYTELMQHLFKLNEYKKGCELYNEM 465 (1038)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~l~~~m 465 (1038)
+++.+.|+.-.+.++....+|.....+..+.+++..|.+.|..-... .|| ...||.+-.+|.+.++..+|...+.+.
T Consensus 502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 502 SEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 55555555555555444445555555555555555555555544432 232 344555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 466 LKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCME 501 (1038)
Q Consensus 466 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (1038)
++.. .-+...|...+....+.|.+++|.+.+.++.
T Consensus 580 lKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 580 LKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 5544 2233444444444555555555555555544
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.24 E-value=0.015 Score=63.63 Aligned_cols=218 Identities=15% Similarity=0.123 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC-CCcchHHHHHHHHHHcCCHhHHHHH
Q 001645 775 VDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVG---MLQLAKSCMDVLRKVGF-TVPLSYSLYIRALCRAGELEEALAL 850 (1038)
Q Consensus 775 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 850 (1038)
.+++..+++..+..-...+..+|..+.+---..- ..+.....++.+...-. ....+|-.+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4566666666555433334444444433221111 24455566666655443 3457899999999999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 851 LDEVKEERSKL-DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC 929 (1038)
Q Consensus 851 ~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 929 (1038)
|.++.+.+..+ ++..+++++.-||. ++.+-|.++|+.=.+. +.-+..--...++-+...|+=..|..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999998888 77778888877764 7788999999875543 223333445677888889999999999999998877
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001645 930 EPT--VVTYTALIQGFANLGKVAEAWDVFYRMKIKGP---FPDFRTYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 930 ~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
.|| ...|..++.--...|++..+.++-+++...-+ .+....-..+++-|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 765 57899999999999999999999888765422 222233446777787777765544444444
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.22 E-value=0.025 Score=65.71 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=81.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 001645 206 GEAKELELLEELEREMEINSCAKNIKTWTILVSL--YGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDI 283 (1038)
Q Consensus 206 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 283 (1038)
...++|..|.+....+.+. .|+.. |..++.+ ..+.|+.++|..+++.....+.. |..|...+-..|-..++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3567888888888888765 24432 2333333 35788888888888877766533 77888888888888888888
Q ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001645 284 ALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMV 327 (1038)
Q Consensus 284 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 327 (1038)
|..+|+...+. .|+......+..+|.+.+++.+-.++--+|-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~Ly 137 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLY 137 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888664 4667777777788888887765444433333
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=5.8e-05 Score=84.62 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=160.9
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHH
Q 001645 772 GRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALL 851 (1038)
Q Consensus 772 ~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 851 (1038)
.|-..+|..++++ ...+...+.||+..|+.++|..+.....+ .++++..|..+.+.....--+++|.+++
T Consensus 411 lGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawEls 480 (777)
T KOG1128|consen 411 LGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELS 480 (777)
T ss_pred cchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHh
Confidence 3466677776664 45677778888888888888887777777 5556677777777666666677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001645 852 DEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP 931 (1038)
Q Consensus 852 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 931 (1038)
+..... .-..+..-....++++++.+.|+.-.+.+ +.-..+|-.+.-+..+.+++..|.+.|..... ..|
T Consensus 481 n~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~P 550 (777)
T KOG1128|consen 481 NYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEP 550 (777)
T ss_pred hhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCC
Confidence 665432 11122222334688888888888766543 44567788888888889999999999998886 367
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhcHHHH
Q 001645 932 T-VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGI-VPSNINFRTI 1009 (1038)
Q Consensus 932 d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~l 1009 (1038)
| ...||++-.+|.+.|+-.+|...+.+..+-+.. +...|-..+....+-|.|++|++.+.+|.+-.. .-|......+
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~i 629 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLII 629 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHH
Confidence 5 567999999999999999999999999888744 778888888999999999999999998874211 1255555555
Q ss_pred HHHHhc
Q 001645 1010 FFGLNR 1015 (1038)
Q Consensus 1010 ~~~~~~ 1015 (1038)
+....+
T Consensus 630 v~~~~~ 635 (777)
T KOG1128|consen 630 VRTVLE 635 (777)
T ss_pred HHHHHh
Confidence 555443
No 119
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.19 E-value=0.0058 Score=62.63 Aligned_cols=313 Identities=13% Similarity=0.028 Sum_probs=181.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHc
Q 001645 199 NTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVA-YKVLVRSLCN 277 (1038)
Q Consensus 199 ~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~ 277 (1038)
--+-..+...|++..|+.-|....+.+ |.+-.++-.-...|...|+-.-|+.-|.+..+. +||-.. --.-...+.+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 344555667788888888888777432 333334444455777888888888888888766 677432 2222345678
Q ss_pred CCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001645 278 AGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEF 357 (1038)
Q Consensus 278 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 357 (1038)
.|.++.|..=|+.+.+....-+. ...++.+.--.++ .......+..+.-.|+...|++.
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e----------------~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQE----------------HWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHH----------------HHHHHHHHHHHhcCCchhhHHHH
Confidence 88888888888888776432110 0111111110111 11122333444455666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 001645 358 IRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLP 437 (1038)
Q Consensus 358 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 437 (1038)
+..+.+..+. |...|..-..+|...|++..|..=++...+....+...+.-+-..+.+.|+.+.++...++-.+. .|
T Consensus 178 i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dp 254 (504)
T KOG0624|consen 178 ITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DP 254 (504)
T ss_pred HHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Cc
Confidence 6665554433 55556666666666666666665555555544444445555555555666666666555555443 23
Q ss_pred CHHH----HHHH---------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 438 MAST----YTEL---------MQHLFKLNEYKKGCELYNEMLKRGIQPDSVA---VTAMVAGHVRQDNLSEAWKVFKCME 501 (1038)
Q Consensus 438 ~~~t----~~~l---------l~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~ 501 (1038)
|... |..| +......+++.++.+-.+..++....-.... +..+-.+|...|++.+|++.-.+..
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 3211 1111 1122345667777777777777643322233 3445556667788889988888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 502 DKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASK 539 (1038)
Q Consensus 502 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (1038)
+-.. .|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 335 ~~d~-~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 335 DIDP-DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcCc-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 6531 246777777778888888899988888877653
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.17 E-value=0.00071 Score=81.19 Aligned_cols=175 Identities=10% Similarity=0.074 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 001645 349 MRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFE 428 (1038)
Q Consensus 349 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 428 (1038)
|.-+...++|++..+.- . ....|..|...|.+.+.+++|-++++.|.++-.....+|...+..+.+.++-+.|..++.
T Consensus 1511 G~eesl~kVFeRAcqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred CcHHHHHHHHHHHHHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 44444444444443321 1 133555566666666666666666666655544444556666666666666666666666
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001645 429 RMKESGYL-PMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRP 507 (1038)
Q Consensus 429 ~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 507 (1038)
+..+.=.+ -........+..-.+.|+.+.+..+|+..+..- +-....|+..+++-.+.|+.+.+..+|++....++.|
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55543111 122333344444456677777777777766652 2245667777777777777777777777777766654
Q ss_pred CH--HHHHHHHHHHHhcCCHH
Q 001645 508 TR--KSYSVFIKELCRVSRTN 526 (1038)
Q Consensus 508 ~~--~~~~~li~~~~~~g~~~ 526 (1038)
-. ..|...+..=-..|+-.
T Consensus 1668 kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCchh
Confidence 33 23444444333344433
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.15 E-value=0.00015 Score=68.38 Aligned_cols=103 Identities=10% Similarity=-0.047 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 868 SLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG 947 (1038)
Q Consensus 868 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 947 (1038)
.+...+...|++++|...|+...... +.+...|..+..++.+.|++++|+..|++..+.. +.+...+..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444455555555555555554432 3344455555555555555555555555555431 224445555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 948 KVAEAWDVFYRMKIKGPFPDFRTYSM 973 (1038)
Q Consensus 948 ~~~~A~~~~~~m~~~~~~~~~~~~~~ 973 (1038)
++++|...|++..+..+. ++..|..
T Consensus 107 ~~~eAi~~~~~Al~~~p~-~~~~~~~ 131 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYA-DASWSEI 131 (144)
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 555555555555554444 4444433
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0015 Score=64.28 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=132.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ 875 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 875 (1038)
+|..+.-+...+|+.+.|..+++.+..+.+.+...-..-..-+-..|++++|+++++.+.+.. +.|.+++---+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344555566778999999999999998886665443334445566899999999999999874 5577778777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC---CHHH
Q 001645 876 RGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLG---KVAE 951 (1038)
Q Consensus 876 ~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g---~~~~ 951 (1038)
.|+.-+|++-+....+. +..|...|.-|...|...|++++|.-.++++.-. .| ++..+..+...+.-.| +.+-
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888898888887765 6789999999999999999999999999999864 45 5555566666665554 5778
Q ss_pred HHHHHHHHHHcCCCCCHHHHH
Q 001645 952 AWDVFYRMKIKGPFPDFRTYS 972 (1038)
Q Consensus 952 A~~~~~~m~~~~~~~~~~~~~ 972 (1038)
|.+.|.+..+..+. +...+.
T Consensus 210 arkyy~~alkl~~~-~~ral~ 229 (289)
T KOG3060|consen 210 ARKYYERALKLNPK-NLRALF 229 (289)
T ss_pred HHHHHHHHHHhChH-hHHHHH
Confidence 99999999887664 444443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00037 Score=69.25 Aligned_cols=158 Identities=13% Similarity=0.020 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 798 ETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRG 877 (1038)
Q Consensus 798 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 877 (1038)
..+-..+...|+-+....+........+.+......++....+.|++.+|+..|.+.... -++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 334444444555555555544444444444334444555555555555555555555443 3444555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001645 878 QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFY 957 (1038)
Q Consensus 878 ~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 957 (1038)
+.++|..-|.+..+.- +-+...+|.|.-.|.-.|+++.|..++.+....+ .-|..+-..|.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555555544421 2223334444444444555555555555544432 2244444444445555555555555444
Q ss_pred H
Q 001645 958 R 958 (1038)
Q Consensus 958 ~ 958 (1038)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.00064 Score=80.66 Aligned_cols=246 Identities=17% Similarity=0.100 Sum_probs=166.8
Q ss_pred ChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCcchHH
Q 001645 756 SGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCM---DVLRKVGFTVPLSYS 832 (1038)
Q Consensus 756 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~---~~~~~~~~~~~~~~~ 832 (1038)
...+...++.......+..-+...+++.++.+ .....|.++.+...+ ..+...-+.++..+-
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (694)
T PRK15179 26 SGPTILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQV 90 (694)
T ss_pred CCcHHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHH
Confidence 34455555555554344333444555555433 233344444433333 334444455567888
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhc
Q 001645 833 LYIRALCRAGELEEALALLDEVKEERSKLDE-FVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFRE 911 (1038)
Q Consensus 833 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 911 (1038)
.|.....+.|.+++|..+++...+. .||. .....+...+.+.+++++|+...++..... +-+......+..++.+.
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999984 5654 466778889999999999999999998764 45567777888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001645 912 KQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELL 991 (1038)
Q Consensus 912 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~ 991 (1038)
|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+..-. ....|+.++ ++...-..++
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~-~~~~~~~~~------~~~~~~~~~~ 239 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD-GARKLTRRL------VDLNADLAAL 239 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc-chHHHHHHH------HHHHHHHHHH
Confidence 99999999999999742 234788888999999999999999999999876322 445555543 3334445566
Q ss_pred HHHHHC----CCCCChhcHHHHHHHHhccCCh--hhhhcCCc
Q 001645 992 SEMTES----GIVPSNINFRTIFFGLNREDNL--YQITKRPF 1027 (1038)
Q Consensus 992 ~~m~~~----g~~p~~~~~~~l~~~~~~~g~~--~~~~~~~~ 1027 (1038)
+++.-. |..-..+....+|..+.+.-.. ++....|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (694)
T PRK15179 240 RRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFV 281 (694)
T ss_pred HHcCcccccCCCceeeeeHHHHHHHHhhcCcccccCCCCCCc
Confidence 666422 3333567777777777554433 33444443
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.12 E-value=0.025 Score=61.85 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 899 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 977 (1038)
.+|..+++.-.+..-++.|..+|.++.+.+..+ +++++++++.-|| .++.+-|.++|+.=..+-.. ++.--...++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 345566666666666666666666666655555 5556666665443 35566666666654443222 34444455666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC--hhcHHHHHHHHhccCChhh
Q 001645 978 LCKVGKSEEALELLSEMTESGIVPS--NINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~ 1021 (1038)
+.+.|+-..|..+|++....++.|+ ...|..++.-=..-|++.-
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6666666666666666665544443 3556666655455555544
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00021 Score=70.92 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=74.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCH
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
-..+.-.|+-+.+..+....... ...|....+..+....+.|++.+|...|++..... ++|-..|+.+.-+|.+.|++
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 34444445555544444443322 12233333444555555555555555555554432 44555555555555555555
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001645 915 GRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELL 991 (1038)
Q Consensus 915 ~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~ 991 (1038)
++|..-|.+..+- .| +...++.|.-.|.-.|+.+.|..++.+....+.. |..+-..+.-+....|++.+|..+.
T Consensus 151 ~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555542 22 3344445555555555555555555555544433 4444444555555555555555544
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0011 Score=65.71 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=102.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHh----
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFR---- 910 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~---- 910 (1038)
...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++|++. -+-.|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 345677788888887776621 2222222244456667788888888888763 355566666666654
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-H
Q 001645 911 EKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEAL-E 989 (1038)
Q Consensus 911 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~ 989 (1038)
.+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..+++....+..+ ++.+...++.+-...|...++. +
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHH
Confidence 33577888888888764 5788888888888888888888888888888888777 7777777777777777764443 3
Q ss_pred HHHHHHH
Q 001645 990 LLSEMTE 996 (1038)
Q Consensus 990 l~~~m~~ 996 (1038)
.+..++.
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 4555543
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.07 E-value=0.0011 Score=78.64 Aligned_cols=238 Identities=11% Similarity=0.042 Sum_probs=168.9
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHH--HCCCCC
Q 001645 716 NGYLITPDTWTIMMMQYGRAGLTEMAM-RVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMV--NAGHIP 792 (1038)
Q Consensus 716 ~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~--~~~~~~ 792 (1038)
.|+..++.....+=.+.+.-|..++|- +++.+..+ ++.... .+..+..-+-++. ...+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 84 (694)
T PRK15179 22 GGPASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHA-----AVHKPAAALPELLDYVRRYPH 84 (694)
T ss_pred CCCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhh-----hhcchHhhHHHHHHHHHhccc
Confidence 345556666666666677778777764 45555543 222211 2222222222221 123455
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001645 793 DKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD-EFVFGSLIH 871 (1038)
Q Consensus 793 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~ 871 (1038)
+...+..|.....+.|++++|..+++.+.+..|.....+..+...+.+.+++++|+..+++.... .|+ ......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999999999985 454 556677788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 872 GLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAE 951 (1038)
Q Consensus 872 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 951 (1038)
++.+.|++++|..+|++....+ +-+..++.++..++-..|+.++|...|++..+. ..|...-|+.++ +++..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHH
Confidence 8889999999999999999743 455889999999999999999999999999875 245555555443 33444
Q ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHHHHHh
Q 001645 952 AWDVFYRMKIK----GPFPDFRTYSMFIGCLCK 980 (1038)
Q Consensus 952 A~~~~~~m~~~----~~~~~~~~~~~l~~~~~~ 980 (1038)
-..+++++--. |......+..+++.-|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 235 DLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 55556655322 222233445555555544
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.07 E-value=9.4e-05 Score=69.82 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 884 AKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKG 963 (1038)
Q Consensus 884 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 963 (1038)
.++++..+. .|+. +..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..+..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555442 4553 5567888899999999999999998763 4478889999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHH
Q 001645 964 PFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFR 1007 (1038)
Q Consensus 964 ~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 1007 (1038)
+. ++..+..+..+|...|++++|++.++...+ +.|+...+.
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 87 899999999999999999999999999986 457554443
No 130
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.05 E-value=0.00047 Score=71.88 Aligned_cols=184 Identities=11% Similarity=0.042 Sum_probs=126.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh---hHHH
Q 001645 335 RDAYGCVLKSFCVSMRIREALEFIRNLKSKEIS-M-DRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGK---IYGI 409 (1038)
Q Consensus 335 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~ 409 (1038)
...+..+...+...|++++|...++++....+. | ....+..+...|...|++++|...++++.+..+.+.. ++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 345777778888899999999999988776543 1 1246677888889999999999999999887776443 4555
Q ss_pred HHHHHhcc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001645 410 IIGGYLRK--------NDLSKALVQFERMKESGYLPMA-STYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAM 480 (1038)
Q Consensus 410 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~l 480 (1038)
+...+... |++++|.+.|+.+.... |+. ..+..+... .. . .... ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~------~~~~--------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---L------RNRL--------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---H------HHHH--------HHHHHHH
Confidence 55666554 67888888888887653 332 222211111 00 0 0000 0112245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 481 VAGHVRQDNLSEAWKVFKCMEDKGI--RPTRKSYSVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
...|.+.|++.+|...++....... +.....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6678899999999999999887631 123568889999999999999999999888654
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=0.00015 Score=67.96 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=77.2
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 897 TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIG 976 (1038)
Q Consensus 897 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 976 (1038)
+......+...+...|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|..++++..+.++. +...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHH
Confidence 33445566677777788888888888777653 346677777777888888888888888887777655 6777777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhcHH
Q 001645 977 CLCKVGKSEEALELLSEMTESGIVPSNINFR 1007 (1038)
Q Consensus 977 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 1007 (1038)
+|...|++++|.+.+++..+ ..|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 88888888888888887776 345554433
No 132
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.02 E-value=0.00086 Score=67.05 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=93.3
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHH-HhcCC--HHHH
Q 001645 841 AGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHF-FREKQ--VGRA 917 (1038)
Q Consensus 841 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~-~~~g~--~~~A 917 (1038)
.++.++++..++...+. .+.|...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56677777777777765 35567788888888888888888888888888754 44667777777764 66676 4888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 918 LEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 918 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
.+++++.++.. +-+...+..+...+.+.|++++|+..|+++.+..+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888753 336677788888888889999999999988887555
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.95 E-value=0.081 Score=61.75 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHcCCHh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 001645 830 SYSLYIRALCRAGELE---EALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVV 906 (1038)
Q Consensus 830 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~ 906 (1038)
+-+.|++.+.+.++.. +|+-+++..... .+-|..+--.+|+.|+-.|-...|..+|..|.-.+|+-|..-|-. ..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HH
Confidence 4578888898888754 566666665553 234555667788999999999999999999887777777766554 34
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhc
Q 001645 907 HFFREKQVGRALEIFERMRQEG--CEPTVVTYTALIQGFANLGKVAEAWDVF---YRMKIKGPFPDFRTYSMFIGCLCKV 981 (1038)
Q Consensus 907 ~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~A~~~~---~~m~~~~~~~~~~~~~~l~~~~~~~ 981 (1038)
.+.-.|++..+...++....-- -.-+..-| +..|| +.|.+++-.++. +++.......-..+-+..++.++..
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~ey--I~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEY--IALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHH--HHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556677777777777655320 01122222 23344 556666555543 3333322222344566777888888
Q ss_pred CChHHHHHHHHHHH
Q 001645 982 GKSEEALELLSEMT 995 (1038)
Q Consensus 982 g~~~~A~~l~~~m~ 995 (1038)
++.++=...++.|.
T Consensus 593 ~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 593 DRGTQLLKLLESMK 606 (932)
T ss_pred CcHHHHHHHHhccc
Confidence 98888888888876
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.92 E-value=0.0048 Score=74.05 Aligned_cols=56 Identities=5% Similarity=0.033 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001645 338 YGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDI 395 (1038)
Q Consensus 338 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (1038)
+..+..+|-+.|+.++|..+|+++.+..+. |+.+.|.+...|... ++++|++.+.+
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 344444444445555555555555444432 444555555555555 55555554433
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.83 E-value=0.0014 Score=70.85 Aligned_cols=136 Identities=16% Similarity=0.129 Sum_probs=80.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD-EFVFGSLIHGLVQRGQIEEALA 884 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~ 884 (1038)
..|.+++|+..++.+....|.++..+......+.+.++..+|.+.++++... .|+ ...+-++..+|.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3455555555555555555555555666666666666666666666666653 344 4445555666666666666666
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 885 KVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK 962 (1038)
Q Consensus 885 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 962 (1038)
+++...... +-|...|..|..+|...|+..+|..-.. .+|.-.|++++|...+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 666655442 5566666666666666666555544322 2344556666666666666554
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.00065 Score=74.44 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=76.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGK 948 (1038)
Q Consensus 869 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 948 (1038)
++..+...++++.|..+|+++.+.. |+. ...|+..+...++-.+|.+++++.++.. +-|...+..-...|.+.|+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3344444555666666666665442 332 2335555555666666666666666531 2345555555666777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 949 VAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 949 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
++.|+++.+++.+..|. +..+|..|+.+|.+.|++++|+..++.+.
T Consensus 250 ~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777666 77777777777777777777777777664
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.75 E-value=0.00082 Score=62.98 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGK 948 (1038)
Q Consensus 869 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 948 (1038)
+...+...|++++|...|+.+...+ +.+...|..+...|.+.|++++|..+++...+.+ +.+...+..+...|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3334444444444444444444322 2233444444444444444444444444444331 2233444444444444455
Q ss_pred HHHHHHHHHHHHHc
Q 001645 949 VAEAWDVFYRMKIK 962 (1038)
Q Consensus 949 ~~~A~~~~~~m~~~ 962 (1038)
+++|.+.|++..+.
T Consensus 101 ~~~A~~~~~~al~~ 114 (135)
T TIGR02552 101 PESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555444444
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.75 E-value=4.7e-05 Score=51.73 Aligned_cols=33 Identities=58% Similarity=0.928 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001645 970 TYSMFIGCLCKVGKSEEALELLSEMTESGIVPS 1002 (1038)
Q Consensus 970 ~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 1002 (1038)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.02 Score=57.21 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=58.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH----hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001645 380 LCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGY----LRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEY 455 (1038)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 455 (1038)
+.+..++|-|...++.|.+.+-. .+.+-|..++ ...+.+..|.-+|++|.++ ..|+..+.+-...++...+++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 44455555555555555543322 2222222222 2233455666666666543 355666666666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 456 KKGCELYNEMLKRGIQPDSVAV-TAMVAGHVRQDNLSEAWKVFKCMEDK 503 (1038)
Q Consensus 456 ~~a~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (1038)
++|..++++.+..... +..+. |.++.+.....+.+...+.+..+...
T Consensus 224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 6666666666665433 23333 33333333333344444555555443
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.72 E-value=5.2e-05 Score=51.48 Aligned_cols=32 Identities=31% Similarity=0.627 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPT 932 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 932 (1038)
||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.64 E-value=0.0025 Score=60.38 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 001645 866 FGSLIHGLVQRGQIEEALAKVETMKQAGIYPT---VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT--VVTYTALI 940 (1038)
Q Consensus 866 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li 940 (1038)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+...+....|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344444 4778888888888887642 222 34444566788889999999999999988652232 22444567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001645 941 QGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 941 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
..+...|++++|+..++...... ..+..+....++|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78888999999999997754332 25567788899999999999999988753
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.61 E-value=0.0001 Score=49.67 Aligned_cols=33 Identities=36% Similarity=0.706 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 001645 969 RTYSMFIGCLCKVGKSEEALELLSEMTESGIVP 1001 (1038)
Q Consensus 969 ~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p 1001 (1038)
.+|+.++.+|++.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.032 Score=55.32 Aligned_cols=84 Identities=13% Similarity=0.227 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001645 383 AGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELY 462 (1038)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~ 462 (1038)
.|.+++|.++++.+.+.++.+..++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|+++.|.-.+
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 344444444444444444444444433333333334433444444333332 2234444444444444444444444444
Q ss_pred HHHHH
Q 001645 463 NEMLK 467 (1038)
Q Consensus 463 ~~m~~ 467 (1038)
++++-
T Consensus 178 EE~ll 182 (289)
T KOG3060|consen 178 EELLL 182 (289)
T ss_pred HHHHH
Confidence 44443
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.58 E-value=0.00011 Score=49.43 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQEGCE 930 (1038)
Q Consensus 900 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 930 (1038)
+|++++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.58 E-value=0.002 Score=61.07 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCc---chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 001645 807 VGMLQLAKSCMDVLRKVGFTVP---LSYSLYIRALCRAGELEEALALLDEVKEERSKLDE--FVFGSLIHGLVQRGQIEE 881 (1038)
Q Consensus 807 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~ 881 (1038)
.++...+...++.+.+..+..+ ...-.+...+...|++++|...|+........|+. ...-.+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555554442 22333445555566666666666666654322211 122234444555555555
Q ss_pred HHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 882 ALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFER 923 (1038)
Q Consensus 882 A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 923 (1038)
|+..++...... .....+....+.|.+.|+.++|...|++
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554432221 2223344445555555555555555543
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.49 E-value=0.0011 Score=72.85 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 001645 860 KLDEFVFGSLIHGLVQRGQIEEALAKVETMKQA--GIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYT 937 (1038)
Q Consensus 860 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 937 (1038)
+-+......+++.+....+++++..++.+.... ....-..|..++|+.|.+.|..+++++++..=..-|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444555555555555555554444431 111111222355555555555555555555544455555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001645 938 ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCL 978 (1038)
Q Consensus 938 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 978 (1038)
.|++.+.+.|++..|.+++-.|...+...++.|+..-+.+|
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 55555555555555555555544443333444444333333
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.45 E-value=0.0018 Score=55.80 Aligned_cols=94 Identities=23% Similarity=0.287 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCK 980 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 980 (1038)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++......+. +..++..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4456666777777888888887776642 233456666777777778888888888887776655 55677777788888
Q ss_pred cCChHHHHHHHHHHHH
Q 001645 981 VGKSEEALELLSEMTE 996 (1038)
Q Consensus 981 ~g~~~~A~~l~~~m~~ 996 (1038)
.|++++|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888777654
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.39 E-value=0.00037 Score=58.85 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001645 911 EKQVGRALEIFERMRQEGC-EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALE 989 (1038)
Q Consensus 911 ~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 989 (1038)
.|+++.|+.+++++.+... .|+...+..+..+|.+.|++++|..++++ .+.++. +......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677888888888877532 12444555578888888888888888877 333333 34555566888888888888888
Q ss_pred HHHH
Q 001645 990 LLSE 993 (1038)
Q Consensus 990 l~~~ 993 (1038)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.38 E-value=0.0046 Score=67.93 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=47.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCH
Q 001645 341 VLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDL 420 (1038)
Q Consensus 341 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 420 (1038)
+++.+...++..+|.+++.+..+.... +........+.|.+.++++.|+.+.+++....+.+-.+|..|...|.+.|++
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 333344444444555555444433222 3444444455555666666666666666665555555566666666666666
Q ss_pred HHHHHHHHHHH
Q 001645 421 SKALVQFERMK 431 (1038)
Q Consensus 421 ~~A~~~~~~m~ 431 (1038)
+.|+..+..+.
T Consensus 285 e~ALlaLNs~P 295 (395)
T PF09295_consen 285 ENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCc
Confidence 66665555443
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.37 E-value=0.0022 Score=70.65 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=70.6
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 001645 400 NLVDGKIYGIIIGGYLRKNDLSKALVQFERMKES--GYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAV 477 (1038)
Q Consensus 400 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~ 477 (1038)
.+++......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+.+++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444445555666666666666666666665544 22222344456666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001645 478 TAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCR 521 (1038)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (1038)
|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666666655554455554444444333
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.34 E-value=0.0022 Score=54.90 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCC--------ChhHHHHHHHHHHhCCCcCCHHHHHHHH
Q 001645 237 VSLYGKAKLIGKALLVFEKMRKYGF-EPDAVAYKVLVRSLCNAG--------KGDIALEFYKEMAQKEMVLDLSLYKIVM 307 (1038)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li 307 (1038)
|..+...+++..-..+|+.+++.|+ -|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333334555555555555555554 455555555555444432 1223445566666666666666666665
Q ss_pred HHH
Q 001645 308 NCA 310 (1038)
Q Consensus 308 ~~~ 310 (1038)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 554
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.32 E-value=0.00023 Score=46.69 Aligned_cols=30 Identities=53% Similarity=0.877 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 001645 970 TYSMFIGCLCKVGKSEEALELLSEMTESGI 999 (1038)
Q Consensus 970 ~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~ 999 (1038)
+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566666666666666666666666665553
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.0072 Score=54.93 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPT----VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP--DFRTYSMF 974 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l 974 (1038)
+..++..+.+.|++++|.+.|+++.+. .|+ ...+..+...+.+.|++++|.+.++.+....+.. ...++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 334444445555555555555555443 121 2233445555555555555555555555433221 13344555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 001645 975 IGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 975 ~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
..++.+.|++++|.+.++++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 5555555555555555555554
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.29 E-value=0.00031 Score=46.03 Aligned_cols=25 Identities=36% Similarity=0.689 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMR 925 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~ 925 (1038)
||+++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.26 E-value=0.0045 Score=68.39 Aligned_cols=99 Identities=9% Similarity=-0.039 Sum_probs=62.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 001645 870 IHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKV 949 (1038)
Q Consensus 870 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 949 (1038)
...+...|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777766543 3455566666667777777777777777776542 22455666666667777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH
Q 001645 950 AEAWDVFYRMKIKGPFPDFRTY 971 (1038)
Q Consensus 950 ~~A~~~~~~m~~~~~~~~~~~~ 971 (1038)
++|+..|++..+..+. +....
T Consensus 87 ~eA~~~~~~al~l~P~-~~~~~ 107 (356)
T PLN03088 87 QTAKAALEKGASLAPG-DSRFT 107 (356)
T ss_pred HHHHHHHHHHHHhCCC-CHHHH
Confidence 7777777777666554 44433
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.24 E-value=0.0046 Score=53.13 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGK 948 (1038)
Q Consensus 869 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 948 (1038)
+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.+++..... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444445555555555555554432 2222444455555555556666666665555432 2233455555555666666
Q ss_pred HHHHHHHHHHHHH
Q 001645 949 VAEAWDVFYRMKI 961 (1038)
Q Consensus 949 ~~~A~~~~~~m~~ 961 (1038)
+++|...+++..+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655544
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.23 E-value=0.0057 Score=52.49 Aligned_cols=78 Identities=14% Similarity=0.324 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 868 SLIHGLVQRGQIEEALAKVETMKQAGI-YPTVHVYTSFVVHFFREK--------QVGRALEIFERMRQEGCEPTVVTYTA 938 (1038)
Q Consensus 868 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~pd~~~~~~ 938 (1038)
..|.-+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 666666666666655432 23345666666666666677777766
Q ss_pred HHHHHHh
Q 001645 939 LIQGFAN 945 (1038)
Q Consensus 939 li~~~~~ 945 (1038)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6665543
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.22 E-value=0.0062 Score=55.37 Aligned_cols=107 Identities=9% Similarity=0.032 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHH
Q 001645 864 FVFGSLIHGLVQRGQIEEALAKVETMKQAGI--YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT----VVTYT 937 (1038)
Q Consensus 864 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~ 937 (1038)
.++..+...+.+.|++++|...|..+.+..- ......+..+...+.+.|++++|.+.|+.+... .|+ ...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHH
Confidence 4566778888999999999999999987421 112456777999999999999999999999875 233 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 938 ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSM 973 (1038)
Q Consensus 938 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 973 (1038)
.+..++.+.|+.++|.+.++++.+..|. +..+..+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~ 115 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPG-SSAAKLA 115 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcC-ChhHHHH
Confidence 8888999999999999999999998776 5544443
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.21 E-value=0.0083 Score=55.76 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 899 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 977 (1038)
...-.+...+...|++++|..+|+-+..- .| +..-|..|.-.|...|++++|+..|.......+. |+..+-.+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 33444555667788888888888888764 45 4556677777888888888888888888888876 88888888888
Q ss_pred HHhcCChHHHHHHHHHHHHC-CCCCChh
Q 001645 978 LCKVGKSEEALELLSEMTES-GIVPSNI 1004 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~-g~~p~~~ 1004 (1038)
|...|+.+.|.+-|+..... +-.|...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~~~~ 140 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVSEHQ 140 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccChhHH
Confidence 88888888888888876642 4445443
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.0027 Score=64.48 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=47.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001645 910 REKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEAL 988 (1038)
Q Consensus 910 ~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 988 (1038)
+.+++++|+..|.+.++. .| |++-|..=..+|.+.|.++.|++-.+..+...+. -..+|..|..+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 344555555555555442 33 3333344444555555555555555555544443 3445555555555555555555
Q ss_pred HHHHHHHHCCCCCChhcHHHHHH
Q 001645 989 ELLSEMTESGIVPSNINFRTIFF 1011 (1038)
Q Consensus 989 ~l~~~m~~~g~~p~~~~~~~l~~ 1011 (1038)
+.|++.++ +.|+..+|.+=+.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHH
Confidence 55555443 4455444444443
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.15 E-value=0.0076 Score=58.86 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=59.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP--TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFI 975 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 975 (1038)
...|..+...+...|++++|+..|++.......| ...+|..+...|.+.|++++|++.+++..+..+. ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 3445555666666677777777777776542111 1346667777777777777777777777766544 455666666
Q ss_pred HHHH-------hcCChHHHHHHHHH
Q 001645 976 GCLC-------KVGKSEEALELLSE 993 (1038)
Q Consensus 976 ~~~~-------~~g~~~~A~~l~~~ 993 (1038)
.+|. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 6666 67777755555544
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.015 Score=57.03 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPT--VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQ 941 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~ 941 (1038)
.|..+...+...|++++|...|++..+.+..++ ...|..+...|.+.|++++|...+++..+. .| +...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 455555555666666666666666554321111 244555555666666666666666665543 23 3344444455
Q ss_pred HHHhcCCH
Q 001645 942 GFANLGKV 949 (1038)
Q Consensus 942 ~~~~~g~~ 949 (1038)
.|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 55555543
No 163
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.07 E-value=0.0091 Score=58.11 Aligned_cols=87 Identities=18% Similarity=0.325 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------------CChhHHH
Q 001645 227 AKNIKTWTILVSLYGK-----AKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNA----------------GKGDIAL 285 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------g~~~~A~ 285 (1038)
..+-.+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.||+.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 355666666666677777777777777776665431 1223444
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHhc
Q 001645 286 EFYKEMAQKEMVLDLSLYKIVMNCAAKL 313 (1038)
Q Consensus 286 ~~~~~m~~~~~~p~~~~~~~li~~~~~~ 313 (1038)
+++++|...|+-||..|+..+++.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 5555555555555555555555554433
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.03 E-value=0.0094 Score=57.99 Aligned_cols=101 Identities=23% Similarity=0.356 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHh----------------cCCHHHHH
Q 001645 860 KLDEFVFGSLIHGLVQ-----RGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFR----------------EKQVGRAL 918 (1038)
Q Consensus 860 ~p~~~t~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~----------------~g~~~~A~ 918 (1038)
..|..+|..++..|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ -.+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3466666666666654 36666666667777777777777777777776643 12446689
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 001645 919 EIFERMRQEGCEPTVVTYTALIQGFANLGK-VAEAWDVFYRMK 960 (1038)
Q Consensus 919 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 960 (1038)
+++++|...|+.||..|+..|++.+++.+. ..+.++++--|.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999977665 334444444443
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.042 Score=58.29 Aligned_cols=291 Identities=14% Similarity=0.045 Sum_probs=137.0
Q ss_pred cCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-----------hHHHHHHHH
Q 001645 699 RGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGS-----------TYKYLIISL 767 (1038)
Q Consensus 699 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~~~ 767 (1038)
+..++..|...+....+..+. +..-|..=...+...|++++|+--.+.-.+. +|+.. ....++.+.
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHHHH
Confidence 345566667777777666554 4555555555666666777666554443332 11111 011111111
Q ss_pred HhhcCCC---hHHHHHHHHHHHHCCCC-CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcC
Q 001645 768 SGRKGRK---VDHAIKIFQEMVNAGHI-PDKELVETY-LDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAG 842 (1038)
Q Consensus 768 ~~~~~~~---~~~A~~~~~~m~~~~~~-~d~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 842 (1038)
...+..+ ...++..++........ |....+..+ ..++.-.|++++|.++--...+....+....-.-...+-..+
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~ 217 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYND 217 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccccc
Confidence 1111111 11112222222222211 211222211 455666677777777666666655433222222222333456
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 001645 843 ELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFE 922 (1038)
Q Consensus 843 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 922 (1038)
+.+.|...|++.... .|+...-.++- .-.+.++.+++.| +-..+.|.+.+|.+.|.
T Consensus 218 ~~~ka~~hf~qal~l--dpdh~~sk~~~----------~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 218 NADKAINHFQQALRL--DPDHQKSKSAS----------MMPKKLEVKKERG------------NDAFKNGNYRKAYECYT 273 (486)
T ss_pred chHHHHHHHhhhhcc--ChhhhhHHhHh----------hhHHHHHHHHhhh------------hhHhhccchhHHHHHHH
Confidence 667777777766653 34433222111 1111122222221 22345677777777777
Q ss_pred HHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 001645 923 RMRQE---GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGI 999 (1038)
Q Consensus 923 ~m~~~---g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~ 999 (1038)
+.+.. ..+|+...|........+.|+..+|+.--+...+.... =...|-.-..++...++|++|++-++...+...
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 76642 23344555555555666777777777776666554322 122333334555556677777777776654332
Q ss_pred CC-ChhcHHHHHHHHhccC
Q 001645 1000 VP-SNINFRTIFFGLNRED 1017 (1038)
Q Consensus 1000 ~p-~~~~~~~l~~~~~~~g 1017 (1038)
.+ ...+++....+|.+..
T Consensus 353 s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 353 DCEIRRTLREAQLALKKSK 371 (486)
T ss_pred ccchHHHHHHHHHHHHHhh
Confidence 22 2344444445555433
No 166
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.034 Score=57.20 Aligned_cols=115 Identities=11% Similarity=0.091 Sum_probs=96.7
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHH
Q 001645 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG---KVAEAWDVFYRMKIKGPFPDFRTY 971 (1038)
Q Consensus 895 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~ 971 (1038)
+-|...|..|...|...|+.+.|..-|.+..+.. .+|...+..+..++..+. ...+|.++|+++....+. |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 7788999999999999999999999999998752 445666666766666443 367999999999999888 99999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 001645 972 SMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGL 1013 (1038)
Q Consensus 972 ~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~ 1013 (1038)
..|.-.+...|++.+|...|+.|++ .-|....++.+|..-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie~~ 270 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHHHH
Confidence 9999999999999999999999997 567777888888744
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.00 E-value=0.015 Score=64.33 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=69.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCH
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
...+...|++++|++.|+++.+.. +-+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455667788888888888887752 3345667777777788888888888888877653 34566777777788888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH
Q 001645 915 GRALEIFERMRQEGCEPTVVTY 936 (1038)
Q Consensus 915 ~~A~~~~~~m~~~g~~pd~~~~ 936 (1038)
++|+..|++.++. .|+....
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~ 106 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRF 106 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHH
Confidence 8888888887764 4544433
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.95 E-value=0.0028 Score=50.25 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 939 LIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 939 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+...+.+.|++++|.+.|+++++..|. +...|..+..++...|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666777777777777777777666 777777777777777777777777777764
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.88 E-value=0.17 Score=47.66 Aligned_cols=134 Identities=17% Similarity=0.127 Sum_probs=101.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH
Q 001645 859 SKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP---TVVT 935 (1038)
Q Consensus 859 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~ 935 (1038)
..|+...--.|..++...|+..||...|++...--+.-|....-.+.++....++...|...++++.+.. | ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 3577777778888899999999999999888765566778888888888888999999999999887742 3 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 936 YTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 936 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.-.+...|...|++++|+..|+...+.-+.|...+ ....-+.+.|+..+|..-+.++.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~--~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARI--YYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH--HHHHHHHHhcchhHHHHHHHHHHH
Confidence 45667888889999999999998888654444444 455667888887777666655543
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.86 E-value=0.19 Score=53.72 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=13.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 001645 729 MMQYGRAGLTEMAMRVFEDMKA 750 (1038)
Q Consensus 729 i~~~~~~g~~~~A~~~~~~m~~ 750 (1038)
...|-..+++++|...|.+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHH
Confidence 3456666777777777766543
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.85 E-value=0.86 Score=48.34 Aligned_cols=251 Identities=16% Similarity=0.105 Sum_probs=112.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 735 AGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLS--GRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQL 812 (1038)
Q Consensus 735 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~ 812 (1038)
.|+++.|.+-|+.|.+ .|.... .=+.+++ ....|..+.|..+-+..-+..... .....+.++..|..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~---dPEtRl--lGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLD---DPETRL--LGLRGLYLEAQRLGAREAARHYAERAAEKAPQL-PWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhc---ChHHHH--HhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHHHHhcCChHH
Confidence 4666666666666654 122211 1111111 112345555555555444332211 2344455556666666666
Q ss_pred HHHHHHHHHHcCCCCcc----hHHHHHHHHH---HcCCHhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 001645 813 AKSCMDVLRKVGFTVPL----SYSLYIRALC---RAGELEEALALLDEVKEERSKLDEFVF-GSLIHGLVQRGQIEEALA 884 (1038)
Q Consensus 813 A~~~~~~~~~~~~~~~~----~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~ 884 (1038)
|+++.+.-......... .--.|+.+-. -.-+...|...-.+..+ +.||.+-- -.-..++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 66666554433322111 1111111111 01123333333333332 34443322 222345666666666666
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 885 KVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQE-GCEPT-VVTYTALIQGFANLGKVAEAWDVFYRMKIK 962 (1038)
Q Consensus 885 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 962 (1038)
+++.+-+.. |-..++. +..+.+.|+. ++.-+++.... .++|| .....++..+-...|++..|..-.+.....
T Consensus 285 ilE~aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 666666542 3222222 2223344432 22222222110 12443 344455555555666666666655555443
Q ss_pred CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC
Q 001645 963 GPFPDFRTYSMFIGCLCKV-GKSEEALELLSEMTESGIVP 1001 (1038)
Q Consensus 963 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~l~~~m~~~g~~p 1001 (1038)
.|....|..|.+.-... |+-.++.+.+.+-+...-.|
T Consensus 359 --~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 359 --APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred --CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 34556666666665444 77777777776666544444
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.84 E-value=0.2 Score=51.93 Aligned_cols=175 Identities=12% Similarity=0.092 Sum_probs=102.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcchH---HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c
Q 001645 802 DCLCEVGMLQLAKSCMDVLRKVGFTVPLSY---SLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ--R 876 (1038)
Q Consensus 802 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~ 876 (1038)
..+.+.|++++|.+.|+.+....+..+... -.++.++.+.+++++|...+++..+.-..-...-|...+.+.+. .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 334556777777777777776666554332 44566777788888888888887775322222333333444331 1
Q ss_pred ---------------CC---HHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 877 ---------------GQ---IEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTA 938 (1038)
Q Consensus 877 ---------------g~---~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 938 (1038)
.+ ..+|+..|+.+.+. -|+ ..-..+|...+..+.+. .-..- -.
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~---la~~e-~~ 180 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR---LAKYE-LS 180 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH---HHHHH-HH
Confidence 11 22344444444432 222 22234444444443321 01111 14
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 939 LIQGFANLGKVAEAWDVFYRMKIKGP--FPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 939 li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+..-|.+.|.+..|..-++.+.+.-+ .....+...++.+|...|..++|.+..+-+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 55678889999999999999988633 2345677788899999999999988776654
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.83 E-value=0.019 Score=61.00 Aligned_cols=131 Identities=13% Similarity=0.163 Sum_probs=80.0
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHH
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHG-LVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVH 907 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~ 907 (1038)
.+|-.+++..-+.+..++|.++|.+..+.+ ..+...|...... |...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356677777777777777777777776532 1222333333222 33345666677777777654 45566667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 908 FFREKQVGRALEIFERMRQEGCEPTV---VTYTALIQGFANLGKVAEAWDVFYRMKIK 962 (1038)
Q Consensus 908 ~~~~g~~~~A~~~~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 962 (1038)
+.+.|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777754 22222 36777777777777777777777777665
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.82 E-value=0.0038 Score=50.08 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=37.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHH
Q 001645 945 NLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRT 1008 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 1008 (1038)
+.|++++|++.|+++.+..|. +...+..++.+|.+.|++++|.++++++.. ..|+...+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHH
Confidence 456666666666666666665 666666666666666666666666666664 2454433333
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.82 E-value=0.025 Score=52.69 Aligned_cols=96 Identities=9% Similarity=-0.080 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLV 874 (1038)
Q Consensus 795 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 874 (1038)
..+-.+..-+...|++++|.++|+.+...++.+...|..|...+-..|++++|+..|....... +-|...+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344555667778888888888888888888777888888888888888888888888887764 345666677777788
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001645 875 QRGQIEEALAKVETMKQ 891 (1038)
Q Consensus 875 ~~g~~~~A~~~~~~m~~ 891 (1038)
..|+.+.|.+-|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888877665
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.81 E-value=0.062 Score=62.09 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 932 TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 932 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+...|.++.-.+...|++++|...++++.+.++ +...|..+..+|...|+.++|.+.+++..+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555556777777777777766653 556677777777777777777777766654
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.80 E-value=0.042 Score=53.84 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=65.4
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLD--EFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVV 906 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~ 906 (1038)
..+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4567777788888888888888888876533332 3567777888888888888888888877642 334556666677
Q ss_pred HHHhcCCHHHHHHHHHH
Q 001645 907 HFFREKQVGRALEIFER 923 (1038)
Q Consensus 907 ~~~~~g~~~~A~~~~~~ 923 (1038)
.|...|+...+..-++.
T Consensus 115 ~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDE 131 (172)
T ss_pred HHHHcCChHhHhhCHHH
Confidence 77777776555544333
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.79 E-value=0.071 Score=54.53 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=87.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCH
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
.+-+.+.+++++|+..|.+.++. .+-|.+.|..-..+|++.|..+.|++-.+.....+ +--..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 34556778888888888888885 33466777778888888888888888877777643 33457788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH---HHHHHHHHHHHcCCCCCH
Q 001645 915 GRALEIFERMRQEGCEPTVVTYTALIQGF-ANLGKVA---EAWDVFYRMKIKGPFPDF 968 (1038)
Q Consensus 915 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~-~~~g~~~---~A~~~~~~m~~~~~~~~~ 968 (1038)
++|++.|++.++ +.|+-.+|..=+..- -+.+... .+..-++.....|..||.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 888888888886 578766665433322 2222222 444444444444544553
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.75 E-value=0.036 Score=58.96 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHH-cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCR-AGELEEALALLDEVKEERSKLDEFVFGSLIHGLV 874 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 874 (1038)
+|..++...-+.+.++.|+.+|....+.+......|-.....-.+ .++.+.|..+|+...+. +..+...|...++-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 344455555555556666666666654433333334443444233 34444466666666654 4455566666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 875 QRGQIEEALAKVETMKQAGIYPT---VHVYTSFVVHFFREKQVGRALEIFERMRQE 927 (1038)
Q Consensus 875 ~~g~~~~A~~~~~~m~~~g~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 927 (1038)
+.++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+..+.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666543 2222 246666666666667777776666666653
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.74 E-value=0.0067 Score=48.78 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 001645 932 TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVG-KSEEALELLSEMTE 996 (1038)
Q Consensus 932 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~l~~~m~~ 996 (1038)
++.+|..+...+...|++++|+..|++..+..+. ++..|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455666666666666677777777666666655 6666666666666666 56666666666543
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.73 E-value=0.022 Score=55.52 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001645 863 EFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYP--TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALI 940 (1038)
Q Consensus 863 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 940 (1038)
...|..+...+...|++++|+..|++.......+ ...+|..+...|...|+.++|+..+++..+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555666666677777777777665432111 22466667777777777777777777776541 22334455555
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 001645 941 QGFA-------NLGKVAEAWDVFYR 958 (1038)
Q Consensus 941 ~~~~-------~~g~~~~A~~~~~~ 958 (1038)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 66666655544443
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.72 E-value=0.0045 Score=52.18 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHcCC-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 001645 877 GQIEEALAKVETMKQAGI-YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWD 954 (1038)
Q Consensus 877 g~~~~A~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~ 954 (1038)
|++++|+.+++++.+..- .++...+-.+..+|.+.|++++|.+++++ .+. .| +......+..+|.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 444555555555444211 11223333345555555555555555544 111 11 11222233444555555555555
Q ss_pred HHHH
Q 001645 955 VFYR 958 (1038)
Q Consensus 955 ~~~~ 958 (1038)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.69 E-value=0.41 Score=51.51 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFA 944 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 944 (1038)
+.+..|.-+...|+...|.++..+.+ .|+..-|-.-+.+|+..+++++-.++... +-.++-|--++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445556666777777766655554 56777777777777777777766654322 123466777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001645 945 NLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSE 993 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~ 993 (1038)
+.|+..+|..+..++ . + ..-+..|.+.|+|.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777777662 1 1 3455667777777777666444
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.68 E-value=0.25 Score=51.16 Aligned_cols=178 Identities=10% Similarity=0.042 Sum_probs=104.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHhc
Q 001645 340 CVLKSFCVSMRIREALEFIRNLKSKEISMDRDH--FETLVKGLCIAGRISDALEIVDIMMRRNLVDG-KIYGIIIGGYLR 416 (1038)
Q Consensus 340 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~li~~~~~ 416 (1038)
.....+...|++++|.+.|+.+....+...... .-.+..+|.+.+++++|...+++..+..+.+. .-|.....+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344555678888888888888887655432221 23456777888888888888888888777643 223333333321
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 001645 417 --KN---------------D---LSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVA 476 (1038)
Q Consensus 417 --~g---------------~---~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~ 476 (1038)
.+ + ..+|++.|+++.+. |-...-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHH
Confidence 11 1 12333444444433 22222234444333333221 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 477 VTAMVAGHVRQDNLSEAWKVFKCMEDK--GIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQ 536 (1038)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (1038)
--.+.+.|.+.|.+..|..-++.+.+. +.+....+...++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124566788888888888888888765 223344556677788888888888887776654
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.66 Score=46.45 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-----HHHHHH
Q 001645 867 GSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVT-----YTALIQ 941 (1038)
Q Consensus 867 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-----~~~li~ 941 (1038)
++++..+.-.|.+.-.+..+++..+.+-+.+......|++.-.+.|+.+.|...|++..+..-+.|..+ ..+...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444555555555555555544445555555555555566666666666665443211222222 222223
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 942 GFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 942 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.|.-+.++.+|...+.++....+. |+...|.=+-++.-.|+..+|++.++.|++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445566666666666665555 555555555555556666666666666664
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.66 E-value=0.075 Score=61.44 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=44.7
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 897 TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 897 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+...|..+.-.....|++++|...+++.++. .|+...|..+...|...|+.++|.+.+++.....|.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3455555555555567777777777777664 356667777777777777777777777777666555
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.55 E-value=0.1 Score=55.84 Aligned_cols=149 Identities=18% Similarity=0.265 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhcc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRK-NDLSKALVQFERMKES----GYLPM--ASTYTE 444 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ 444 (1038)
.|...+..|...|++..|-++ +..+...|... |++++|++.|.+..+. | .+. ..++..
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~--------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~ 160 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKC--------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLK 160 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHH--------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHH
Confidence 344455667777777777665 45566677777 8888888888776542 2 111 345666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCH--HHHHH
Q 001645 445 LMQHLFKLNEYKKGCELYNEMLKRGIQPD-----SV-AVTAMVAGHVRQDNLSEAWKVFKCMEDK--GIRPTR--KSYSV 514 (1038)
Q Consensus 445 ll~~~~~~~~~~~a~~l~~~m~~~g~~p~-----~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~--~~~~~ 514 (1038)
+...+.+.|++++|.++|++........+ .. .+-..+-++...||+..|.+.|++.... ++..+. .....
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 77788889999999999998887533221 21 2233344666788999999999988754 232222 23344
Q ss_pred HHHHHHh--cCCHHHHHHHHHHH
Q 001645 515 FIKELCR--VSRTNEILKVLNNM 535 (1038)
Q Consensus 515 li~~~~~--~g~~~~A~~~~~~m 535 (1038)
||.++-. ...++.++.-|+.+
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHccc
Confidence 5555533 23355555555554
No 188
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.49 E-value=0.14 Score=48.56 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCChhcHH
Q 001645 935 TYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT-----ESGIVPSNINFR 1007 (1038)
Q Consensus 935 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~~~~ 1007 (1038)
....++..+...|++++|.++.+++....|. |...|..+|.+|...|+..+|++.|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3456677788899999999999999998888 88999999999999999999999998875 458888875543
No 189
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.46 E-value=1.8 Score=47.10 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=44.9
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHH
Q 001645 838 LCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTS 903 (1038)
Q Consensus 838 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~ 903 (1038)
+-..|++.++.-.-..+.+ +.|++.+|..+.-++....++++|..++..+ +|+..++++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 4457888888777666666 6788888888888888888888888888764 567666665
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.44 E-value=2.4 Score=48.35 Aligned_cols=42 Identities=12% Similarity=0.316 Sum_probs=23.0
Q ss_pred HHhcCCHHHHHHHHHHHHH-cCCCccHhhHHHHHHHHHhcCCH
Q 001645 873 LVQRGQIEEALAKVETMKQ-AGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 873 ~~~~g~~~~A~~~~~~m~~-~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
-...|.++.|++.--.+.. ..+-|...+|..|.-+-|....+
T Consensus 1031 ql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred HHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 3445666666655444443 34566677777665555444433
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.34 E-value=0.017 Score=45.73 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 904 FVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 904 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+...+...|++++|+..|+++++.. +-+...+..+..++...|++++|...|+++.+..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3455667777777777777777653 225566677777777777777777777777766543
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.32 E-value=0.12 Score=46.31 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CcchHHHHHHHHHHcCCHhHH
Q 001645 773 RKVDHAIKIFQEMVNAGHIPDK--ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFT---VPLSYSLYIRALCRAGELEEA 847 (1038)
Q Consensus 773 ~~~~~A~~~~~~m~~~~~~~d~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 847 (1038)
|+.++|+.+|++.+..|...+. ..+-.+...+...|++++|..+++......+. +......+..++...|+.++|
T Consensus 15 G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 15 GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHH
Confidence 4555555555555555443321 12223344444445555555555444444333 111222223344445555555
Q ss_pred HHHHHHH
Q 001645 848 LALLDEV 854 (1038)
Q Consensus 848 ~~~~~~m 854 (1038)
++.+-..
T Consensus 95 l~~~l~~ 101 (120)
T PF12688_consen 95 LEWLLEA 101 (120)
T ss_pred HHHHHHH
Confidence 5554433
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.32 E-value=0.018 Score=46.26 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=47.2
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 001645 897 TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG-KVAEAWDVFYRMKIKG 963 (1038)
Q Consensus 897 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~ 963 (1038)
+..+|..+...+...|++++|+..|++.++.. +-+...|..+..+|.+.| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 34567777777777888888888888777753 335667777777777777 6788888887776653
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=2.9 Score=47.79 Aligned_cols=203 Identities=15% Similarity=0.229 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC--------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCc
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKY-GFEPD--------AVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMV 297 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~--------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 297 (1038)
.|.+..|..|...-.+.-.++-|...|-+.... |++-- ...-.+=+.+| -|++++|+++|-+|-++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 688899998888877777788888888776542 22110 01111122222 4889999999988877643
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001645 298 LDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPE----RDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHF 373 (1038)
Q Consensus 298 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 373 (1038)
.|..+.+.||+-.+.++++. .|...| ...|+.+...+.....|++|.+.|..-.. .
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 36677788888777666542 121111 23588888888888888888888865321 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001645 374 ETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLN 453 (1038)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 453 (1038)
...+++|.+...+++-+.+...+.+ +....-.|..++...|.-++|.+.|-+-. .| ...+..|...+
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELN 892 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHH
Confidence 3456666666666665555544433 33446677888888888888887764432 12 23455677778
Q ss_pred ChhHHHHHHHHH
Q 001645 454 EYKKGCELYNEM 465 (1038)
Q Consensus 454 ~~~~a~~l~~~m 465 (1038)
++.+|.++-+..
T Consensus 893 QW~~avelaq~~ 904 (1189)
T KOG2041|consen 893 QWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHhc
Confidence 888887766543
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.31 E-value=0.02 Score=46.53 Aligned_cols=55 Identities=31% Similarity=0.314 Sum_probs=36.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 941 QGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 941 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
..|.+.+++++|.+.++++...+|. ++..|.....+|.+.|++++|.+.+++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3556666666666666666666665 666666666666667777777766666664
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.14 E-value=0.23 Score=44.65 Aligned_cols=89 Identities=16% Similarity=0.080 Sum_probs=54.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhcc
Q 001645 343 KSFCVSMRIREALEFIRNLKSKEISMD--RDHFETLVKGLCIAGRISDALEIVDIMMRRNLV---DGKIYGIIIGGYLRK 417 (1038)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~ 417 (1038)
.++-..|+.++|+.+|++....|...+ ...+-.+...|...|++++|..+|+......+. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 445556777777777777776665543 234455666677777777777777776655443 223333344455666
Q ss_pred CCHHHHHHHHHHHH
Q 001645 418 NDLSKALVQFERMK 431 (1038)
Q Consensus 418 g~~~~A~~~~~~m~ 431 (1038)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777776665544
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.14 E-value=0.018 Score=46.01 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=45.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001645 206 GEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLV 272 (1038)
Q Consensus 206 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 272 (1038)
...|++++|.++|+.+.... |.+...+..+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 45677888888888887765 667777778888888888888888888887766 45544444443
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.14 E-value=0.92 Score=43.02 Aligned_cols=133 Identities=12% Similarity=0.093 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHH
Q 001645 262 EPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQI-PERDAYGC 340 (1038)
Q Consensus 262 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ 340 (1038)
.|+...--.|..++...|++.+|...|++...--.--|....-.+.++....+++..+...++++.+.... -+..+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56766677788888888888888888888876545567777778888888888888888888887775421 12234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001645 341 VLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIM 396 (1038)
Q Consensus 341 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (1038)
+.+.|...|+...|...|+...+.-..|....|- ...+.+.|+.+++..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHHH
Confidence 6677778888888888888877765444444333 33456777776665544333
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.13 E-value=0.064 Score=55.95 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPTV----VTYTALIQGFANLGKVAEAWDVFYRMKIKGPF--PDFRTYSMF 974 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l 974 (1038)
|...+..+.+.|++++|...|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+..+. ..+..+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444343334445556666666655553 2332 24445555666666666666666666554322 123344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 001645 975 IGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 975 ~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+.+|...|++++|...+++..+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666666666554
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.13 E-value=0.63 Score=46.89 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCc---chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKVGFTVP---LSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRG 877 (1038)
Q Consensus 801 i~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 877 (1038)
...+...|++.+|.+.|+.+....+..+ .+.-.++.++-+.|++++|...+++..+.-..-...-+...+.|.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3345566777777777777777666543 3456667778888888888888888776522211222333333332211
Q ss_pred -------------CHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 878 -------------QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFA 944 (1038)
Q Consensus 878 -------------~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 944 (1038)
...+|...|+. ++.-|=...-..+|...+..+.+. .-.. --.+...|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHH
Confidence 12233333333 333333444445555555544331 0111 123566788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 001645 945 NLGKVAEAWDVFYRMKIKGPFP--DFRTYSMFIGCLCKVGKSEEAL 988 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 988 (1038)
+.|.+..|..-++.+++.-|.. ...+...++.+|.+.|..+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8899999999999888874431 1245667788888888877443
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.94 E-value=0.46 Score=44.91 Aligned_cols=72 Identities=24% Similarity=0.372 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 001645 371 DHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKE-----SGYLPMASTY 442 (1038)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~ 442 (1038)
.....++..+...|++++|..+.+.+...++.+...|..+|.+|...|+...|++.|+++.. .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 35667788888999999999999999999999999999999999999999999999988743 4888877654
No 202
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=5 Score=47.23 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001645 373 FETLVKGLCIAGRISDALEIVDIMMRRNLVD---GKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHL 449 (1038)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 449 (1038)
...-|+.+++...++.|..+.+. .+... ......-.+-+.+.|++++|...|-+-... +.|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 34445555555566655554322 11111 111222233445566777776666544322 1221 234444
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 450 FKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCME 501 (1038)
Q Consensus 450 ~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (1038)
....+..+....++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+...
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4445555555666666666654 44455666677777777666655555443
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.87 E-value=3.3 Score=44.65 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHH
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHF 908 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~ 908 (1038)
.+.+..|.-+...|+...|.++-.+.. -||..-|-..+.+++..++|++-..+... .-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 456677888889999998888866653 38999999999999999999987775432 22458899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 909 FREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRM 959 (1038)
Q Consensus 909 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 959 (1038)
.+.|+..+|..++.++ ++..-+..|.++|++.+|.+..-+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999988772 2245677899999999998887664
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.41 Score=49.48 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=54.6
Q ss_pred HHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCC
Q 001645 818 DVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQR---GQIEEALAKVETMKQAGI 894 (1038)
Q Consensus 818 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~g~ 894 (1038)
+.-...+|.+...|-.|...|...|+.+.|...|.+..+. ..++...+..+..++... ....++..+|+++.+..
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D- 223 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD- 223 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-
Confidence 3344455555666666666666666666666666666653 223344444444443322 12344555555555432
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQE 927 (1038)
Q Consensus 895 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 927 (1038)
+-|+.+...|...+...|++.+|...|+.|++.
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 233334444444555555555555555555543
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.47 E-value=1.5 Score=44.13 Aligned_cols=59 Identities=10% Similarity=0.047 Sum_probs=26.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 001645 344 SFCVSMRIREALEFIRNLKSKEISM--DRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV 402 (1038)
Q Consensus 344 ~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (1038)
.+...|++.+|.+.|+.+...-+.. -....-.++.++.+.|+++.|...++.+.+..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3445555555555555555432211 1223334455555555555555555555554444
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.47 E-value=0.23 Score=51.84 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTV----HVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT----VVTY 936 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~ 936 (1038)
.|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+. .|+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 3444444445556777777777776653 2332 35556677777777777777777777754 232 3334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 937 TALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 937 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
..++..+...|+.++|.++|+++.+..|.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44555666778888888888877776554
No 207
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=1.8 Score=43.00 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRK 822 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 822 (1038)
.|.-...+|....++++|..++.+..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344445566677777777776666554
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.42 E-value=0.46 Score=50.46 Aligned_cols=97 Identities=12% Similarity=-0.048 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccH
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKE----ERS-KLDEFVFGSLIHGLVQRGQIEEALAKVETMKQ-----AGIYPTV 898 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~ 898 (1038)
.+++.+.+++.-.|+++.|.+.|..... .|- .....+.-+|.+.|.-..++++|+.++++-.. ....-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3455566666666666666666554332 121 12233445566666666666666666654332 1122234
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMR 925 (1038)
Q Consensus 899 ~~y~~li~~~~~~g~~~~A~~~~~~m~ 925 (1038)
.+|-+|..+|...|..++|+.+.+.-+
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 556666666666666666666655543
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=7.5 Score=45.27 Aligned_cols=268 Identities=15% Similarity=0.150 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 001645 688 ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYL----ITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYL 763 (1038)
Q Consensus 688 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 763 (1038)
.+|..+...+-..|+++.|+.+++.=.+.+.. .+..-+..-+.-....|+.+-...++-.|... -+...+...
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~ 584 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT 584 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH
Confidence 45666666667778888887777543322211 02223344455556667777776666666542 122222222
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcC-CCC-cchHHHHHHHHHH
Q 001645 764 IISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVL-RKVG-FTV-PLSYSLYIRALCR 840 (1038)
Q Consensus 764 l~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~~~li~~~~~ 840 (1038)
+. +..-|..+|.+..+.. |. ..+-+.|-...+.+.+..+.-+- .... ... ........+.+.+
T Consensus 585 l~--------~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 585 LR--------NQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HH--------hchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 11 4455666666654421 11 11222333333333222221111 0000 000 1122333344444
Q ss_pred cCCHhHH----------HHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHH
Q 001645 841 AGELEEA----------LALLDEVKE-ERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFF 909 (1038)
Q Consensus 841 ~g~~~~A----------~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~ 909 (1038)
.....-. +++.+.+.. .|......+.+--+.-+..-|+..+|.++-.+.+ .||...|-.=+.+++
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALA 726 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHH
Confidence 4332111 112222211 2333344455556666777788888888877776 678888888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001645 910 REKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALE 989 (1038)
Q Consensus 910 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 989 (1038)
..+++++-+++-+.+. .+.-|.=.+.+|.+.|+.+||.+++.+.. +.. -...+|.+.|++.+|.+
T Consensus 727 ~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~------~l~---ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG------GLQ---EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC------ChH---HHHHHHHHhccHHHHHH
Confidence 8888887666654442 25556667778888888888888887652 111 46677888888888877
Q ss_pred HH
Q 001645 990 LL 991 (1038)
Q Consensus 990 l~ 991 (1038)
+-
T Consensus 792 ~A 793 (829)
T KOG2280|consen 792 LA 793 (829)
T ss_pred HH
Confidence 64
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.34 E-value=0.043 Score=45.33 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMRQE--GCE---PT-VVTYTALIQGFANLGKVAEAWDVFYRM 959 (1038)
Q Consensus 899 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---pd-~~~~~~li~~~~~~g~~~~A~~~~~~m 959 (1038)
.+|+.+...|...|++++|++.|++.++. ... |+ ..+++.+...|...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555555555555555554431 001 11 233444444444444444444444443
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.32 E-value=0.12 Score=42.01 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=41.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 906 VHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 906 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
..|.+.+++++|.++++.+.... +.+...|......+.+.|++++|.+.|++..+.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45667777777777777777652 335566666777777777777887777777776654
No 212
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.31 E-value=3.9 Score=41.66 Aligned_cols=123 Identities=22% Similarity=0.182 Sum_probs=54.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC--CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 001645 872 GLVQRGQIEEALAKVETMKQAGI--YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGK 948 (1038)
Q Consensus 872 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~ 948 (1038)
.+...|+++.|...+........ ......+......+...++.+.|...+.+..... .. ....+..+...+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 34444555555555554432110 0122222222333444555555555555555431 11 24444555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 949 VAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 949 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+++|...+.......+. ....+..+...+...|.++++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555544332 233333444444444455555555555443
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.30 E-value=2.1 Score=46.66 Aligned_cols=75 Identities=21% Similarity=0.125 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC----CCcchHHHHHHHHHH---cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 799 TYLDCLCEVGMLQLAKSCMDVLRKVGF----TVPLSYSLYIRALCR---AGELEEALALLDEVKEERSKLDEFVFGSLIH 871 (1038)
Q Consensus 799 ~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 871 (1038)
.++-.|....+++...++.+.+..... ..+..-.-+.-++-+ .|+.++|++++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 444456666677777777766665521 122223344556666 7888888888888666656677777777666
Q ss_pred HH
Q 001645 872 GL 873 (1038)
Q Consensus 872 ~~ 873 (1038)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 65
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=2 Score=46.14 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=66.7
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcC
Q 001645 449 LFKLNEYKKGCELYNEMLKR---GIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVF--IKELCRVS 523 (1038)
Q Consensus 449 ~~~~~~~~~a~~l~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--i~~~~~~g 523 (1038)
..+.|.+..|.+.|.+.+.. ...|+...|........+.|+..+|+.--+.....+ +...+..+ ..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHH
Confidence 45778888888888888875 345666677777778888888888888877776642 12222222 23444567
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhc
Q 001645 524 RTNEILKVLNNMQASKIVI-GDEIFHWVISCMEKK 557 (1038)
Q Consensus 524 ~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 557 (1038)
++++|.+-+++..+....+ ...++.....++.++
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 7888888887765543322 233444444444433
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=3.9 Score=41.21 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHH-----H
Q 001645 831 YSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSF-----V 905 (1038)
Q Consensus 831 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~l-----i 905 (1038)
.+.++..+...|.+.-.+.++.+.++...+.+......+.+.-.+.|+.+.|..+|++..+..-..|..+.+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 35556666666777777777777777655666666777777777778887777777766553223333333333 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001645 906 VHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP 966 (1038)
Q Consensus 906 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 966 (1038)
..|.-++++..|...+.++.... .-|++..|+-.-...-.|+..+|++.++.|++..|.|
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 34555667777888887777542 2344444443333444678888888888888775543
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.19 E-value=0.057 Score=44.59 Aligned_cols=62 Identities=29% Similarity=0.417 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 934 VTYTALIQGFANLGKVAEAWDVFYRMKIK----GPF-PD-FRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 934 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
.+|+.+...|...|++++|+..|++..+. |.. |+ ..+++.+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666666666666542 211 11 3456666666666666666666666543
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.18 E-value=4.3 Score=45.99 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----------
Q 001645 441 TYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRK---------- 510 (1038)
Q Consensus 441 t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------- 510 (1038)
+...+..-+-+...+..|.++|..|-.. ..++..+...+++.+|..+-+...+- .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333444444455566666666665322 34566666777777777776655432 23322
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001645 511 -SYSVFIKELCRVSRTNEILKVLNNMQASKI 540 (1038)
Q Consensus 511 -~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (1038)
-|...-++|.+.|+..+|..+++++....+
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 123334567788888888888888866543
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.16 E-value=0.54 Score=52.77 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----------
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDF----------- 968 (1038)
Q Consensus 900 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------- 968 (1038)
+...+..-+-+...+.-|-++|.+|-.. ..+++.+...|+|.+|..+.++..+.- ||.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~--~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFK--DDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcccc--ccccchHHHHhhhh
Confidence 3333334444445555666666665321 345666677777777777776654421 111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001645 969 RTYSMFIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 969 ~~~~~l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
.-+.--=.+|-++|+-.||.++++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 11222335677888888999988887643
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.09 E-value=0.17 Score=55.55 Aligned_cols=99 Identities=20% Similarity=0.132 Sum_probs=70.0
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 001645 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTV----VTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRT 970 (1038)
Q Consensus 895 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 970 (1038)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|.+.|+.++|+..++++.+.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 456788999999999999999999999998874 6764 458899999999999999999999998752 11 1
Q ss_pred HHHHHH--HHHhcCChHHHHHHHHHHHHCCC
Q 001645 971 YSMFIG--CLCKVGKSEEALELLSEMTESGI 999 (1038)
Q Consensus 971 ~~~l~~--~~~~~g~~~~A~~l~~~m~~~g~ 999 (1038)
|..+.. .+..-.+.++..++++++...|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 01112233466667777766554
No 220
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.09 E-value=5.6 Score=42.31 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=10.0
Q ss_pred HHhcCChHHHHHHHHH
Q 001645 978 LCKVGKSEEALELLSE 993 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~ 993 (1038)
+.++++|++|.++|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4456666676666653
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=95.03 E-value=0.99 Score=42.51 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 001645 907 HFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEE 986 (1038)
Q Consensus 907 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 986 (1038)
-+...|++++|..+|.-+.--+ .-|..-|..|...|...|++++|...|......++. |+..+.....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3445677777777777766532 223334455666666677777777777776666554 66666677777777777777
Q ss_pred HHHHHHHHHH
Q 001645 987 ALELLSEMTE 996 (1038)
Q Consensus 987 A~~l~~~m~~ 996 (1038)
|.+-|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.01 E-value=0.3 Score=49.21 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 878 QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFRE----------------KQVGRALEIFERMRQEGCEPTVVTYTALIQ 941 (1038)
Q Consensus 878 ~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~----------------g~~~~A~~~~~~m~~~g~~pd~~~~~~li~ 941 (1038)
.++-....+..|.+.|+.-|..+|+.|++.+-+. .+-+-++.++++|...|+.||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444444455555555555555555444221 233568999999999999999999999999
Q ss_pred HHHhcCC-HHHHHHHHHHHHH
Q 001645 942 GFANLGK-VAEAWDVFYRMKI 961 (1038)
Q Consensus 942 ~~~~~g~-~~~A~~~~~~m~~ 961 (1038)
++++.+- ..+.+++.--|.+
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HhccccccHHHHHHHHHhhhh
Confidence 9998876 4466666655544
No 223
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.99 E-value=0.77 Score=48.86 Aligned_cols=131 Identities=13% Similarity=0.072 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMK----QAGIY-PTVHVYTSFVVHFFREKQVGRALEIFERMRQE----GC-EPTVV 934 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~ 934 (1038)
.|..|.+.|.-.|+++.|+...+.-. +.|-+ .-...+..|.+++.-.|+++.|.+.|+.-... |- .-...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 46667777777888888887655432 22211 22356777888888889999998888875432 21 22455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 935 TYTALIQGFANLGKVAEAWDVFYRMKIK-----GPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 935 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+..+|.+.|.-...+.+|+.++.+-... ...-...+|.+|..+|...|..++|+.+.+.-+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6677888888888888888887764431 112245678888999999999888888776654
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.78 E-value=1.1 Score=51.50 Aligned_cols=165 Identities=21% Similarity=0.248 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcc
Q 001645 828 PLSYSLYIRALCRAGELEEALALLDEVKEERSKLDE------FVFGSLIHGLVQ----RGQIEEALAKVETMKQAGIYPT 897 (1038)
Q Consensus 828 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 897 (1038)
|.....++...+-.|+-+.+++.+.+..+.+--... ..|..++..++- ....+.|.++++.+.+. -|+
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~ 265 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN 265 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC
Confidence 345566666777777777777777776553211111 124444443332 35677788888887764 566
Q ss_pred HhhHHHH-HHHHHhcCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 898 VHVYTSF-VVHFFREKQVGRALEIFERMRQE--GC-EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSM 973 (1038)
Q Consensus 898 ~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~--g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 973 (1038)
...|... .+.+...|++++|++.|++.... .. +.....+--+...+.-.+++++|.+.|..+.+..-- +...|.-
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y 344 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAY 344 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHH
Confidence 6666544 35556678888888888876531 11 123445555667777888888888888888775433 3344443
Q ss_pred H-HHHHHhcCCh-------HHHHHHHHHHH
Q 001645 974 F-IGCLCKVGKS-------EEALELLSEMT 995 (1038)
Q Consensus 974 l-~~~~~~~g~~-------~~A~~l~~~m~ 995 (1038)
+ +.+|...|+. ++|.+++++..
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 3445557777 77888877765
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.73 E-value=3.9 Score=44.61 Aligned_cols=169 Identities=12% Similarity=0.101 Sum_probs=111.9
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCccHhhHHHHH
Q 001645 832 SLYIRALCRAGELEEALALLDEVKEER---SKLDEFVFGSLIHGLVQ---RGQIEEALAKVETMKQAGIYPTVHVYTSFV 905 (1038)
Q Consensus 832 ~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~y~~li 905 (1038)
-.++-.|....+++..+++.+.+...- +.-....--...-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556889999999999999998741 11111222233445556 899999999999976655678888999888
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH----HHHHHcC---CC
Q 001645 906 VHFFR---------EKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKV----AEAWDVF----YRMKIKG---PF 965 (1038)
Q Consensus 906 ~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~----~~A~~~~----~~m~~~~---~~ 965 (1038)
..|-+ ....++|+..|.+.-+. .||.++--.++..+...|.. .+..++- ....++| ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 87742 22367888888877654 46655443333344444432 2333333 1222233 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 001645 966 PDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSN 1003 (1038)
Q Consensus 966 ~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 1003 (1038)
.|-..+.+++.++.-.|+.++|.+..++|.... .|.+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence 577788899999999999999999999999752 4444
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=12 Score=43.79 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=76.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 977 (1038)
-.+.+--+.-+...|+..+|.++-.+.. -||...|..-+.+++..+++++-+++.++++ .+.-|.-++.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3344444555666777777777766664 5788778777888888888888887777653 24557778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCChhhhhcCC
Q 001645 978 LCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQITKRP 1026 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~~~~~~ 1026 (1038)
|.+.|+..||.+++.+... . .-.+.+|.+.|++.++.+.+
T Consensus 754 c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHH
Confidence 8888888888888765431 1 14566777788877755433
No 227
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.51 E-value=8.3 Score=47.43 Aligned_cols=201 Identities=18% Similarity=0.162 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 651 YTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMM 730 (1038)
Q Consensus 651 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~ 730 (1038)
.+-.++..|.+.+++++.+-+.++....... ++..-|. | -...++++.|..-+.++. ...|.-.++
T Consensus 851 YDl~Lal~VAq~SqkDPkEyLP~L~el~~m~---~~~rkF~--I--D~~L~ry~~AL~hLs~~~-------~~~~~e~~n 916 (1265)
T KOG1920|consen 851 YDLDLALLVAQKSQKDPKEYLPFLNELKKME---TLLRKFK--I--DDYLKRYEDALSHLSECG-------ETYFPECKN 916 (1265)
T ss_pred cchHHHHHHHHHhccChHHHHHHHHHHhhch---hhhhhee--H--HHHHHHHHHHHHHHHHcC-------ccccHHHHH
Confidence 3455667777778888777777766543211 1111110 0 111345555655555543 223444455
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001645 731 QYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSG--RKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVG 808 (1038)
Q Consensus 731 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g 808 (1038)
.--+.|.+.+|+.++. |+...+..+..+++. .....+++|.-+|+..-+ ..-.+.+|..+|
T Consensus 917 ~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~ 979 (1265)
T KOG1920|consen 917 YIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECG 979 (1265)
T ss_pred HHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhc
Confidence 5556777777776653 666666665555442 122355555555543211 122356667777
Q ss_pred CHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 809 MLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVET 888 (1038)
Q Consensus 809 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 888 (1038)
++++|..+...+....-.....--.|+.-+...+++-+|-++..+-... | .-.+..||+...+++|+.+...
T Consensus 980 dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 980 DWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHh
Confidence 7777776666554322111122255677777788888888887776542 2 2335556777777777766554
Q ss_pred HH
Q 001645 889 MK 890 (1038)
Q Consensus 889 m~ 890 (1038)
-.
T Consensus 1052 ~~ 1053 (1265)
T KOG1920|consen 1052 AK 1053 (1265)
T ss_pred cc
Confidence 43
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=4.2 Score=42.14 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=90.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 001645 379 GLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKG 458 (1038)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 458 (1038)
.....|++.+|..+|+........+...--.++..|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 35567788888888888777777766667777888888888888888887766542222222222334444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 001645 459 CELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDK--GIRPTRKSYSVFIKELCRVSRT 525 (1038)
Q Consensus 459 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~ 525 (1038)
..+-...-.. +-|...-..+...+...|+.++|.+.+-.+..+ |.. |...-..|+..+.-.|.-
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence 4444444433 236666677788888888888888777666543 333 445556666666555533
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.39 E-value=0.73 Score=50.81 Aligned_cols=65 Identities=12% Similarity=-0.037 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---chHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 001645 793 DKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVP---LSYSLYIRALCRAGELEEALALLDEVKEE 857 (1038)
Q Consensus 793 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 857 (1038)
+...++.+..+|.+.|++++|...|+..++..+.+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667777777777777777777777777777665 34777777777777777777777777764
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.27 E-value=10 Score=41.59 Aligned_cols=207 Identities=17% Similarity=0.203 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHcC----CHhHHHHHHHHHHHcCCCCCHH
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVP------LSYSLYIRALCRAG----ELEEALALLDEVKEERSKLDEF 864 (1038)
Q Consensus 795 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~ 864 (1038)
.+|..++....+.++...|.+.+..+.-..+... .+-..+.+..|... +...=+.+|+...... .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 3566667777778888888888877776665443 22233444444211 2233344455544432 2222
Q ss_pred H-HHHHHHH---HHhcC-CHHHHHHHHHHHHHcCCCccHhhHHHHHH----HHHhc---CCHHHHHHHHHHHHHcCCCCC
Q 001645 865 V-FGSLIHG---LVQRG-QIEEALAKVETMKQAGIYPTVHVYTSFVV----HFFRE---KQVGRALEIFERMRQEGCEPT 932 (1038)
Q Consensus 865 t-~~~li~~---~~~~g-~~~~A~~~~~~m~~~g~~p~~~~y~~li~----~~~~~---g~~~~A~~~~~~m~~~g~~pd 932 (1038)
- -.-|+.+ +-+.| +-++|+++++.+.+-. .-|..+-|.+.. +|..+ ..+.+-+.+-+-+.+.|+.|-
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 1 1112222 22334 4788888888887631 223333332221 22111 122333333333445677773
Q ss_pred ----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcH
Q 001645 933 ----VVTYTALIQG--FANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINF 1006 (1038)
Q Consensus 933 ----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 1006 (1038)
...-|.|.+| +...|++.++.-.-..+.+ +.|++.+|..++-++....+++||...+.++ +|+...+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ 528 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMR 528 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhH
Confidence 3445566555 3467888888766665555 4568889999999999999999999988765 4666666
Q ss_pred HHHHH
Q 001645 1007 RTIFF 1011 (1038)
Q Consensus 1007 ~~l~~ 1011 (1038)
.+-++
T Consensus 529 dskvq 533 (549)
T PF07079_consen 529 DSKVQ 533 (549)
T ss_pred HHHHH
Confidence 55444
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.03 E-value=0.58 Score=42.51 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 001645 928 GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK-GPFPDFRTYSMFIGCL 978 (1038)
Q Consensus 928 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~~~ 978 (1038)
...|+..+..+++.+|+..|++..|+++++...+. ++..+...|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34566777777777777777777777777776654 4444556666665443
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.00 E-value=8 Score=39.36 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=83.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcc---hHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPL---SYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ------- 875 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~------- 875 (1038)
+.|++++|.+.|+.+..+.+..+. +.-.++-++-+.+++++|+..+++....-......-|...|.+++.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 456666666666666665554442 3345556667777777777777777665332223334444444442
Q ss_pred cCCHHHHHHHHHHHHH--cCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 876 RGQIEEALAKVETMKQ--AGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAW 953 (1038)
Q Consensus 876 ~g~~~~A~~~~~~m~~--~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 953 (1038)
..+...+.+-|..|.+ .. -||. .=...|......+... . ..-=..+.+-|.+.|.+..|.
T Consensus 126 ~rDq~~~~~A~~~f~~~i~r-yPnS-------------~Ya~dA~~~i~~~~d~---L-A~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQR-YPNS-------------RYAPDAKARIVKLNDA---L-AGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHH-CCCC-------------cchhhHHHHHHHHHHH---H-HHHHHHHHHHHHHhcChHHHH
Confidence 1233333333333322 00 1111 0001111111111000 0 000023455666777777777
Q ss_pred HHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 954 DVFYRMKIKGPF--PDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 954 ~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
.-++.|.+.-+. -....+-.+..+|...|..++|...-+-+.
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 777777765222 112344455667777777777776655444
No 233
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.97 E-value=0.15 Score=36.38 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001645 935 TYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFI 975 (1038)
Q Consensus 935 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 975 (1038)
++..+..+|.+.|++++|+++|+++++..|. |+..|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4556677777777777777777777777666 666665554
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.92 Score=48.81 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=77.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 977 (1038)
..+++.|.-+|.+.+++.+|++..++.++.+ ++|.-....=..+|...|.++.|+..|+++.+..|. |-.+-+-++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4567778888999999999999999998864 567777777788999999999999999999998877 76777777777
Q ss_pred HHhcCChHH-HHHHHHHHHH
Q 001645 978 LCKVGKSEE-ALELLSEMTE 996 (1038)
Q Consensus 978 ~~~~g~~~~-A~~l~~~m~~ 996 (1038)
--+....++ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 666555544 4788888874
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.94 E-value=0.55 Score=42.66 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCChhcHHHHHHHHh
Q 001645 963 GPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE-SGIVPSNINFRTIFFGLN 1014 (1038)
Q Consensus 963 ~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~l~~~~~ 1014 (1038)
...|+..+..+++.+|+..|++..|+++++...+ .++.-+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4668999999999999999999999999999875 577778999999998443
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=1.3 Score=45.91 Aligned_cols=117 Identities=15% Similarity=0.028 Sum_probs=63.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHH
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDE----FVFGSLIHGLVQRGQIEE 881 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~ 881 (1038)
-.|+..+|...++++++.-|.+..+++..-+++...|+...-...++++... -.+|. +.-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3466666666666666666666666666666666666666666666665543 12222 222223333445566666
Q ss_pred HHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 882 ALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERM 924 (1038)
Q Consensus 882 A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 924 (1038)
|.+.-++..+.+ +-|.-.-.++...+-..|+..++.++..+-
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 666555555443 344444445555555566666666554443
No 237
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.55 E-value=0.37 Score=49.98 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=60.9
Q ss_pred HHHHHhhhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 180 RFFNWVKLREGFCHA--TETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMR 257 (1038)
Q Consensus 180 ~~f~~~~~~~~~~~~--~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 257 (1038)
.|+.|+..+...--. ..++..++..+...++++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 136 ~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 136 RFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 466666543321111 2356666777777777777777777777665 6677777777777777777777777777766
Q ss_pred h-----CCCCCCHHHHHHHHHH
Q 001645 258 K-----YGFEPDAVAYKVLVRS 274 (1038)
Q Consensus 258 ~-----~g~~p~~~~~~~ll~~ 274 (1038)
+ .|+.|...+.......
T Consensus 215 ~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 215 KTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHhhhhcCCCccHHHHHHHHHH
Confidence 4 4666666655544443
No 238
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.55 E-value=12 Score=40.06 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=78.9
Q ss_pred HHHhhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--h
Q 001645 167 VLKRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIA--GEAKELELLEELEREMEINSCAKNIKTWTILVSLYG--K 242 (1038)
Q Consensus 167 vl~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l--~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~--~ 242 (1038)
+++.+-.+|..+.+.|.-.++..|+ .+|-..+ .-.|+-..|+++-.+..+. +..|......|+.+-. -
T Consensus 61 lv~~iw~sP~t~~Ryfr~rKRdrgy-------qALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~ 132 (531)
T COG3898 61 LVRSIWESPYTARRYFRERKRDRGY-------QALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALL 132 (531)
T ss_pred HHHHHHhCcHHHHHHHHHHHhhhHH-------HHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHh
Confidence 3334445677777888777666553 3333322 3457777777766655422 2344444445544333 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHH
Q 001645 243 AKLIGKALLVFEKMRKYGFEPDAVA--YKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVL 320 (1038)
Q Consensus 243 ~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 320 (1038)
.|+.+.|.+-|+.|... |.... ...|.-.--+.|..+.|..+-+...+.-.. =...+...+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 67777777777777642 22211 112222223456666666665555443221 1234555555556666666666
Q ss_pred HHHHHHHH
Q 001645 321 SIADDMVR 328 (1038)
Q Consensus 321 ~~~~~m~~ 328 (1038)
++.+.-..
T Consensus 209 kLvd~~~~ 216 (531)
T COG3898 209 KLVDAQRA 216 (531)
T ss_pred HHHHHHHH
Confidence 65555443
No 239
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.50 E-value=0.49 Score=47.76 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHHhcC
Q 001645 284 ALEFYKEMAQKEMVLDLSLYKIVMNCAAKLG 314 (1038)
Q Consensus 284 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 314 (1038)
+..++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4555555555555555555555555554444
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=93.38 E-value=2.2 Score=40.23 Aligned_cols=88 Identities=10% Similarity=-0.024 Sum_probs=49.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 001645 380 LCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGC 459 (1038)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 459 (1038)
+...|++++|..+|.-+...++.+..-|..|...+-..+++++|+..|......+. -|+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34556666666666666655555555555666666666666666666655443321 23333334455566666666666
Q ss_pred HHHHHHHHC
Q 001645 460 ELYNEMLKR 468 (1038)
Q Consensus 460 ~l~~~m~~~ 468 (1038)
..|...++.
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 666666653
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.31 E-value=4.4 Score=37.85 Aligned_cols=125 Identities=12% Similarity=0.120 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhc
Q 001645 832 SLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFRE 911 (1038)
Q Consensus 832 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 911 (1038)
..++..+...+.......+++.+...+ ..+...++.++..|++.. .++.+..++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 344555555555555666666555554 244455555566555542 2233333331 12233333455555566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 912 KQVGRALEIFERMRQEGCEPTVVTYTALIQGFANL-GKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLC 979 (1038)
Q Consensus 912 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 979 (1038)
+.++++..++.++.. . ...+..+... ++++.|.+++.+. .++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666655421 1 1112222222 5666666666652 14556666655554
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.31 E-value=17 Score=40.76 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 833 LYIRALCRAGELEEALALLDEVKEERSK-LDEFVFGSLIHGLVQRGQIEEALAKVETMKQ 891 (1038)
Q Consensus 833 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 891 (1038)
.+....-+.|+.+||++.|.+|.+.... -.......|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444555667777777777777654211 1233455666677777777777666666543
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.30 E-value=4.3 Score=46.77 Aligned_cols=95 Identities=16% Similarity=0.058 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCChhh
Q 001645 337 AYGCVLKSFCVSMRIREALEFIRNLKSK-EISMDR-----DHFETLVKGLCI----AGRISDALEIVDIMMRRNLVDGKI 406 (1038)
Q Consensus 337 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-----~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 406 (1038)
....++....-.||-+.+++++.+-.+. ++.-.. -.|...+..++. ....+.|.++++.+..+.|.+..-
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 3455666666778888888877765442 222111 123333333322 234555666666666555544333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 001645 407 YGIIIGGYLRKNDLSKALVQFERMK 431 (1038)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~ 431 (1038)
.-.-...+...|+.++|++.|++..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 3333444455556666666555433
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=93.28 E-value=3 Score=46.26 Aligned_cols=162 Identities=9% Similarity=-0.006 Sum_probs=107.0
Q ss_pred chH--HHHHHHHHHcC-----CHhHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 001645 829 LSY--SLYIRALCRAG-----ELEEALALLDEVKE-ERSKLD-EFVFGSLIHGLVQ---------RGQIEEALAKVETMK 890 (1038)
Q Consensus 829 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~-~~t~~~li~~~~~---------~g~~~~A~~~~~~m~ 890 (1038)
..| ..++.+..... ..+.|+.+|.+... ....|+ ...|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55565555422 46788999999882 124555 3344444444332 224456777777777
Q ss_pred HcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001645 891 QAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFR 969 (1038)
Q Consensus 891 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 969 (1038)
+.+ +-|......+..+....|+++.|...|++.... .|| ..+|......+.-+|+.++|.+.+++..+..|..-..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 765 667777777888788888899999999998874 565 4566666667778899999999999987776553333
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHH
Q 001645 970 -TYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 970 -~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
.....++.|+..+ .++|+.++-+-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 3334445777665 57788876543
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.14 E-value=1.7 Score=49.20 Aligned_cols=130 Identities=17% Similarity=0.225 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHh
Q 001645 831 YSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFR 910 (1038)
Q Consensus 831 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~ 910 (1038)
.+.++..+-+.|..+.|+++.++-..+ .....+.|+++.|.++.++ .++...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 455666666666666666665433221 3344566666666654332 2355567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001645 911 EKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALEL 990 (1038)
Q Consensus 911 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l 990 (1038)
.|+++-|++.|.+..+ +..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 7777777776666532 24455556666666666666665554431 34444555566666666666
Q ss_pred HHH
Q 001645 991 LSE 993 (1038)
Q Consensus 991 ~~~ 993 (1038)
+.+
T Consensus 425 L~~ 427 (443)
T PF04053_consen 425 LIE 427 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.10 E-value=11 Score=38.31 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001645 479 AMVAGHVRQDNLSEAWKVFKCMEDKGIRPT---RKSYSVFIKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
.+.+.|.+.|.+..|..-+++|.+. .+-+ ...+-.|..+|...|-.++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3456677777777777777777765 2112 22344555666666766666665555543
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=0.8 Score=47.49 Aligned_cols=155 Identities=13% Similarity=0.006 Sum_probs=117.7
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHhhHHHHHHHHHhcCCHH
Q 001645 839 CRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQA---GIYPTVHVYTSFVVHFFREKQVG 915 (1038)
Q Consensus 839 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~y~~li~~~~~~g~~~ 915 (1038)
-..|+.-+|-..++++.+. .+.|...++..-.+|.-.|+.+.-...++++... +++-..+.-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3478888999999999886 6778899999999999999999999999888742 22222333334445556899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001645 916 RALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK---GPFPDFRTYSMFIGCLCKVGKSEEALELLS 992 (1038)
Q Consensus 916 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~ 992 (1038)
+|++.-++..+.+ +.|...-.++...+--.|+..++.+++.+-... +.-.-...|-+..-.|...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988764 567777788888888899999999998875432 111123456677777888899999999998
Q ss_pred HHH
Q 001645 993 EMT 995 (1038)
Q Consensus 993 ~m~ 995 (1038)
+=.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 743
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=9.2 Score=38.33 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Q 001645 232 TWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAA 311 (1038)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 311 (1038)
.|.....+|....++++|...+.+..+. .+-+...|+ ....++.|.-+.++|.+. .--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444445556666666666655555421 122222222 122345555555555442 112334555566677
Q ss_pred hcCChhHHHHHHHHHH
Q 001645 312 KLGDVDAVLSIADDMV 327 (1038)
Q Consensus 312 ~~g~~~~a~~~~~~m~ 327 (1038)
..|..+.|-..+++.-
T Consensus 103 E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA 118 (308)
T ss_pred HhCCcchHHHHHHHHH
Confidence 7777776666665543
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=8 Score=40.12 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHH
Q 001645 804 LCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVK 855 (1038)
Q Consensus 804 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 855 (1038)
....|++.+|...|+......+.....--.++..|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445556666666666655555554455555566666666666666665543
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.58 E-value=8.1 Score=36.00 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 799 TYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQ 878 (1038)
Q Consensus 799 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 878 (1038)
.++..+.+.+........++.+...+..++..++.++..|++.+ ..+.++.++. ..+.+....++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34455555555555555555555555444445555555555442 2233333331 1223333345555555555
Q ss_pred HHHHHHHHHHH
Q 001645 879 IEEALAKVETM 889 (1038)
Q Consensus 879 ~~~A~~~~~~m 889 (1038)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555544
No 251
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.30 E-value=0.2 Score=33.32 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001645 956 FYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEAL 988 (1038)
Q Consensus 956 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 988 (1038)
|++.++..|. ++.+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666777777 8888888888888888888875
No 252
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.17 E-value=5.2 Score=42.63 Aligned_cols=138 Identities=14% Similarity=0.279 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----ChHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhhcCC
Q 001645 703 FKHMRNLFYEMRRNGYLITPDTWTIMMMQYGR--AG----LTEMAMRVFEDMKANGC---NPSGSTYKYLIISLSGRKGR 773 (1038)
Q Consensus 703 ~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~ 773 (1038)
+.....+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|++... .++..++..++..-......
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~ 157 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHH
Confidence 34455666777777777666555442222221 11 24567777777777632 35556666665442211111
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcC---CHhHHHHH
Q 001645 774 KVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAG---ELEEALAL 850 (1038)
Q Consensus 774 ~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~ 850 (1038)
-.+.+..+|+.+.+.|+..... .-+.+-+-+++... ...++.++
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~---------------------------------LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGND---------------------------------LQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcH---------------------------------HHHHHHHHHhccccchHHHHHHHHH
Confidence 2234445555555555444321 11111122222111 14577888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHH
Q 001645 851 LDEVKEERSKLDEFVFGSLIHGL 873 (1038)
Q Consensus 851 ~~~m~~~g~~p~~~t~~~li~~~ 873 (1038)
++.+.+.|+++....|..+.-..
T Consensus 205 ~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 205 YNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHcCCccccccccHHHHHH
Confidence 88888888888777776554433
No 253
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.96 E-value=1.2 Score=46.19 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=47.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKI-----KGPFPDFRTYS 972 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 972 (1038)
..++..++..+...|+.+.+...++++.+.. +-|...|..++.+|.+.|+...|++.|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4556666666666666666666666666542 33566666666666666666666666666554 35555555554
Q ss_pred HHHHH
Q 001645 973 MFIGC 977 (1038)
Q Consensus 973 ~l~~~ 977 (1038)
.+..+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44333
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.82 E-value=3.6 Score=42.18 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVD---GKIYGIIIGGYLRKNDLSKALVQFERMKES-GYLP-MASTYTELM 446 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~t~~~ll 446 (1038)
.|+.-+.. .+.|++..|...|....+..+.+ ..++.-|...+...|+++.|..+|..+.+. +-.| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56666654 46677888888888888877764 345666777777788888887777777664 1112 235566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 001645 447 QHLFKLNEYKKGCELYNEMLKR 468 (1038)
Q Consensus 447 ~~~~~~~~~~~a~~l~~~m~~~ 468 (1038)
.+..+.|+.++|+..|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6677777777777777777765
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.69 E-value=2.1 Score=43.83 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPT---VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF--PDFRTYSMFI 975 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l~ 975 (1038)
|+.-+.. .+.|++..|.+-|...++.. +-+ ...+..|..++...|++++|..+|..+.+..+. .-+.++.-|.
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4443333 23445666666666655531 111 222344566666666666666666666554222 1234555666
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 001645 976 GCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 976 ~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.+..+.|+.++|...|++..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 666666666666666666654
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.67 E-value=4.3 Score=46.05 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=41.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 001645 206 GEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIAL 285 (1038)
Q Consensus 206 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 285 (1038)
.-.++++.+.++.+.-.-.. ..+..-.+.+++-+-+.|..+.|+.+-. |.. .-.....+.|+.+.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHH
Confidence 34456666555554111000 1123445555555555666666655522 221 1223334555555555
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001645 286 EFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADD 325 (1038)
Q Consensus 286 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 325 (1038)
++.++. .+...|..|.....+.|+++-|++.|.+
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 543221 2444555555555555555555555543
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.59 E-value=6.6 Score=35.23 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC 929 (1038)
Q Consensus 869 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 929 (1038)
.++.+.+.|+-+.-.+++..+.+.+ .++....-.+..+|.+.|+..++.+++.+..++|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555555555555555554322 44555555555666666666666666666655553
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=91.56 E-value=16 Score=40.85 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 845 EEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERM 924 (1038)
Q Consensus 845 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 924 (1038)
.+|.++-++..+.+ +-|......+..+....++.+.|..+|++....+ +-...+|......+.-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444432 2344444444444444455555555555554432 122233333333344455555555555554
Q ss_pred H
Q 001645 925 R 925 (1038)
Q Consensus 925 ~ 925 (1038)
.
T Consensus 399 l 399 (458)
T PRK11906 399 L 399 (458)
T ss_pred h
Confidence 4
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.36 E-value=5 Score=35.80 Aligned_cols=91 Identities=24% Similarity=0.117 Sum_probs=63.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCH
Q 001645 803 CLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEF---VFGSLIHGLVQRGQI 879 (1038)
Q Consensus 803 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~ 879 (1038)
++...|+++.|.+.|.+....-|..+..||.-..++.-.|+.++|++=+++..+..-..+.. .|.--...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45667777888888877777777777888888888888888888888888877742222222 233333446667777
Q ss_pred HHHHHHHHHHHHcC
Q 001645 880 EEALAKVETMKQAG 893 (1038)
Q Consensus 880 ~~A~~~~~~m~~~g 893 (1038)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88877777776655
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=1.4 Score=51.47 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=74.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCC
Q 001645 834 YIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQ 913 (1038)
Q Consensus 834 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 913 (1038)
..+.+.+.|++++|...|-+.... ++|. .+|.-|....++.+-..+++.+.+.|+ .+...-..|+.+|.+.++
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcc
Confidence 344455566777776666555443 3332 234445555556666666666666663 445555666777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001645 914 VGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSE 993 (1038)
Q Consensus 914 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~ 993 (1038)
.++-.++.+... .|.- ..-....+..|.+.+-.++|..+..+... .... +-..+-..|++++|++.++.
T Consensus 447 ~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISS 515 (933)
T ss_pred hHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhc
Confidence 666555554433 1211 11223445555566666666655554321 1222 22234445666666666554
Q ss_pred H
Q 001645 994 M 994 (1038)
Q Consensus 994 m 994 (1038)
|
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 4
No 261
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.26 E-value=26 Score=38.41 Aligned_cols=135 Identities=17% Similarity=0.271 Sum_probs=101.0
Q ss_pred CcchHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhH-HHH
Q 001645 827 VPLSYSLYIRALCRAGELEEALALLDEVKEER-SKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVY-TSF 904 (1038)
Q Consensus 827 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y-~~l 904 (1038)
...+|..++++..+..-++.|..+|.++.+.| +.+++..+++++.-++. |+..-|..+|+.=... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 35678888888888888999999999999888 67888888888887764 6677888888764443 3444443 355
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 905 VVHFFREKQVGRALEIFERMRQEGCEPT--VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 905 i~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+..+.+.++-+.|..+|+...++ +..+ ...|..+|.--...|+...+..+=++|.+.-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 66677888888999999976653 2333 567888888888889888888888888775433
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.21 E-value=9.7 Score=40.34 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CccHhh
Q 001645 830 SYSLYIRALCRAGELEEALALLDEVKEE-RSKL---DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI-----YPTVHV 900 (1038)
Q Consensus 830 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~ 900 (1038)
+|-.+.+++-+--++.+++.+-..-... |..| --....+|..++.-.+.++++++.|+...+... -....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4555555665555566666655544331 2222 112334456666667777888888877665211 112356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH----cCCCC-
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQE----GCEPTVVTYTA-----LIQGFANLGKVAEAWDVFYRMKI----KGPFP- 966 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~----~~~~~- 966 (1038)
|..|...|.+..++++|.-+..+..+. ++.--..-|.. |.-++...|+.-.|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777788888888888877766665432 22222223332 33455566776666666555443 23221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001645 967 DFRTYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 967 ~~~~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
-....-.+.++|...|+.|.|+.-|++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1234456777888888877777766653
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.09 E-value=19 Score=36.40 Aligned_cols=225 Identities=19% Similarity=0.146 Sum_probs=149.2
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 001645 736 GLTEMAMRVFEDMKANGCNP-SGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNA-GHIPDKELVETYLDCLCEVGMLQLA 813 (1038)
Q Consensus 736 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~-~~~~d~~~~~~li~~~~~~g~~~~A 813 (1038)
+....+...+.......... ....+......+. ..+.+..+...+...... ........+......+...+++..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALL--KLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHH--HcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence 44555555555555442221 1223333333333 334677777777766653 2334455666667777778888888
Q ss_pred HHHHHHHHHcCCCCcchHHHHHH-HHHHcCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 814 KSCMDVLRKVGFTVPLSYSLYIR-ALCRAGELEEALALLDEVKEERS--KLDEFVFGSLIHGLVQRGQIEEALAKVETMK 890 (1038)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 890 (1038)
.+.+................... .+...|++++|...+++...... ......+......+...++.++|...+....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 88888888766555444444444 78899999999999999855211 1233444445555777899999999999988
Q ss_pred HcCCCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 891 QAGIYP-TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 891 ~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
... .. ....+..+...+...+++++|...+...... .|+ ...+..+...+...|..+++...+++.....+.
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 753 33 4778888889999999999999999999875 344 445555555555777899999999988876543
No 264
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=4 Score=44.16 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKE 432 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 432 (1038)
++..|.-+|.+.+++..|.+..++....++.+.....--..+|+..|+++.|...|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555544444455555555555555555555554
No 265
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.99 E-value=4.9 Score=37.07 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=28.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 001645 381 CIAGRISDALEIVDIMMRRNLV---DGKIYGIIIGGYLRKNDLSKALVQFERMKES 433 (1038)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 433 (1038)
.+.|++++|.+.|+.+..+.+. ...+--.++.+|.+.+++++|+..+++..+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455555555555555555443 2234445555555566666665555555554
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.61 E-value=3 Score=37.18 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCC
Q 001645 872 GLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVV---TYTALIQGFANLGK 948 (1038)
Q Consensus 872 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---~~~~li~~~~~~g~ 948 (1038)
++...|+++.|++.|.+.... .+.....||.=..++.-.|+.++|++=+++.++..-.-... .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455666777777776666543 24455666666666666666666666666666531011111 12222334555666
Q ss_pred HHHHHHHHHHHHHcCC
Q 001645 949 VAEAWDVFYRMKIKGP 964 (1038)
Q Consensus 949 ~~~A~~~~~~m~~~~~ 964 (1038)
.+.|..=|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 6666666666666553
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.56 E-value=5.2 Score=39.18 Aligned_cols=201 Identities=17% Similarity=0.166 Sum_probs=117.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHH
Q 001645 804 LCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIH--GLVQRGQIEE 881 (1038)
Q Consensus 804 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~--~~~~~g~~~~ 881 (1038)
|-..|-..-|+--|.......|..+..||-|.-.+...|+++.|.+.|+...+. .|. .-|..+=+ ++.-.|+++-
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~-y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPT-YNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCc-chHHHhccceeeeecCchHh
Confidence 445566777777788888888888889999999999999999999999999885 332 12222222 2334688888
Q ss_pred HHHHHHHHHHcC-CCccHhhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 882 ALAKVETMKQAG-IYPTVHVYTSFVVHFFREKQVGRALEIF-ERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRM 959 (1038)
Q Consensus 882 A~~~~~~m~~~g-~~p~~~~y~~li~~~~~~g~~~~A~~~~-~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 959 (1038)
|.+-|...-+.. -.|=...|-.|+.. .-+..+|..-+ ++.. ..|..-|...|-.|.- |++++ ..+++++
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~---k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~ 222 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQ---KLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKISE-ETLMERL 222 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHh---hCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhccH-HHHHHHH
Confidence 887777666533 12333444433322 22444554432 3332 3344444443333321 22211 2233333
Q ss_pred HHcCCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccC
Q 001645 960 KIKGPF------PDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNRED 1017 (1038)
Q Consensus 960 ~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g 1017 (1038)
....-. .=..||.-|.+-|...|+.++|..+|+-....++ -+.+.++--+-.+.+-|
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV-ynfVE~RyA~~EL~~l~ 285 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV-YNFVEHRYALLELSLLG 285 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhc
Confidence 321111 0136788899999999999999999988765432 34455554444444433
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.34 E-value=0.85 Score=32.49 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGII 410 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 410 (1038)
++..+...|...|++++|.++|++..+..+.+...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 455666777777777777777777777776665555544
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.01 E-value=13 Score=35.45 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHH
Q 001645 848 LALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTS 903 (1038)
Q Consensus 848 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~ 903 (1038)
++++..+.+.|++|+...|..++..+.+.|+... +..+.+.++-+|......
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~ 65 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLAC 65 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHH
Confidence 4445555555666666666666666666665433 333334444444444333
No 270
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.92 E-value=13 Score=34.35 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=58.7
Q ss_pred HHHHhcCCChhhHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 001645 694 IKTAGRGKDFKHMRNLFYEMRRNGYL--ITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSG 769 (1038)
Q Consensus 694 i~~~~~~~~~~~a~~l~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 769 (1038)
.....+.|++++|.+.|+.+..+-+. .....--.++.+|-+.+++++|...+++.++....-..+-|...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34456789999999999999886432 24456667889999999999999999999987554445667777777763
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.86 E-value=18 Score=34.27 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--H
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVD--GKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMAS-TYTEL--M 446 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l--l 446 (1038)
.|..-+. +...+..++|+.-|..+.+.+..+ .-...-+.......|+...|...|++.-.....|-.. -..-| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 345667777777777777766653 2223334455566777777777777776654444332 11111 1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 447 QHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDK 503 (1038)
Q Consensus 447 ~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (1038)
-.+...|.++......+-+...+-+.....-.+|.-+-.+.|++..|.+.|..+...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 123455666666666655554443333444555665666677777777777766553
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.67 E-value=15 Score=33.08 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 001645 938 ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGI 999 (1038)
Q Consensus 938 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~ 999 (1038)
..++...++|+-+.-.++++.+.. +-.+++.....+..+|.+.|+..+|-+++++.-++|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334445555555555555555443 2233455555555555555555555555555555554
No 273
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.31 E-value=68 Score=40.08 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 001645 216 ELEREMEINSCAKNIKTWTILVSLYGKAK--LIGKALLVFEKMRK 258 (1038)
Q Consensus 216 ~l~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 258 (1038)
+++.....+. .|+ .-.-.+|.+|++.+ .++.|+....+...
T Consensus 778 ~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 778 DAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3333333333 444 44556778888877 67777777766664
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.25 E-value=8.7 Score=40.67 Aligned_cols=192 Identities=15% Similarity=0.066 Sum_probs=122.8
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCc---cHh
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEE--RSK---LDEFVFGSLIHGLVQRGQIEEALAKVETMKQ-AGIYP---TVH 899 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p---~~~ 899 (1038)
.++..+..+.+..|.+++++..--.-.+. ... .-...|-.+.+++.+.-++.+++.+-..-.. .|..| .-.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 45666777777778777766542221110 001 1123455555666666666666665544332 23333 113
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH--
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQE---GCEP--TVVTYTALIQGFANLGKVAEAWDVFYRMKIK----GPFPDF-- 968 (1038)
Q Consensus 900 ~y~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~-- 968 (1038)
..-++..++.-.+.++++++.|+....- .-.| ...+|..|...|.+..++++|.-+..+..+. ++. |.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~ 202 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSL 202 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhH
Confidence 3345667777778899999999988752 1112 3567899999999999999998877766543 333 32
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCC-ChhcHHHHHHHHhccCChhh
Q 001645 969 ----RTYSMFIGCLCKVGKSEEALELLSEMT----ESGIVP-SNINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 969 ----~~~~~l~~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~~~~~l~~~~~~~g~~~~ 1021 (1038)
.+..+|.-+|...|..-+|.+..++.. +.|-.| -+.....+.+.|...|+.|-
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence 234567788999999999999988854 455555 35667778888988888876
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.24 E-value=33 Score=36.44 Aligned_cols=162 Identities=10% Similarity=0.086 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001645 372 HFETLVKGLCIAGRIS---DALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQH 448 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 448 (1038)
++..++.+|...+..+ +|..+++.+....+....++-.-+..+.+.++.+.+.+.+.+|...- .-....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHH
Confidence 4455566666555543 34444444443333334445455555555666666777776666552 1122233333333
Q ss_pred H---HhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHH-HH--hcCC------HHHHHHHHHHHHh-CCCCCCHHHHH
Q 001645 449 L---FKLNEYKKGCELYNEMLKRGIQPDSV--AVTAMVAG-HV--RQDN------LSEAWKVFKCMED-KGIRPTRKSYS 513 (1038)
Q Consensus 449 ~---~~~~~~~~a~~l~~~m~~~g~~p~~~--~~~~li~~-~~--~~g~------~~~A~~~~~~m~~-~g~~p~~~~~~ 513 (1038)
+ .. .....+...+..++..-+.|... .-..++.. +. +.++ ++....+++.+.. .+.+.+..+-.
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3 22 22344555555554443343332 11111111 11 1111 3444444543322 12233444433
Q ss_pred HHH-------HHHHhcCCHHHHHHHHHHH
Q 001645 514 VFI-------KELCRVSRTNEILKVLNNM 535 (1038)
Q Consensus 514 ~li-------~~~~~~g~~~~A~~~~~~m 535 (1038)
++. ..+.+.++++.|.++|+--
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 322 3356788999999998754
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.08 E-value=14 Score=41.41 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=38.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP--TVVTYTALIQGFANLGKVAEAWDVFYRMK 960 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 960 (1038)
..+-.-|..++.+.|+.++|++.+.+|.+.. ++ +......|+.++...+.+.++..++.+--
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3333445666667777777777777776431 12 22345566777777777777777777654
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.87 E-value=36 Score=36.37 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCCC
Q 001645 352 REALEFIRNLKSKEISMDRDHFETLVKGLCI--AG----RISDALEIVDIMMRRNLV 402 (1038)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~~ 402 (1038)
++.+.+++.|.+.|+.-+..+|-+....... .. ...+|..+++.|.+..+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 3445566667777776555554432222222 11 234566666666665543
No 278
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.33 E-value=20 Score=42.44 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHH-HHHHHH-HHhcCCHHHHHHHHHHHHH-------cCCCCcchHHHHHHHHHHcC---
Q 001645 775 VDHAIKIFQEMVNAGHIPDKELV-ETYLDC-LCEVGMLQLAKSCMDVLRK-------VGFTVPLSYSLYIRALCRAG--- 842 (1038)
Q Consensus 775 ~~~A~~~~~~m~~~~~~~d~~~~-~~li~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g--- 842 (1038)
...|.++++...+.|..-..... .....+ +....+.+.|...+....+ .+ .+.+..-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCc
Confidence 45666677666665532211110 111112 3344455666666655544 22 2334444444444432
Q ss_pred --CHhHHHHHHHHHHHcC
Q 001645 843 --ELEEALALLDEVKEER 858 (1038)
Q Consensus 843 --~~~~A~~~~~~m~~~g 858 (1038)
+.+.|+.++.+..+.|
T Consensus 306 ~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG 323 (552)
T ss_pred cccHHHHHHHHHHHHhcC
Confidence 3344555555555543
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.18 E-value=1 Score=30.38 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 970 TYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 970 ~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+|+.|..+|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 280
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.18 E-value=25 Score=36.70 Aligned_cols=59 Identities=7% Similarity=0.133 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKY-GFEPDAVAYKVLVRSLCNAGKGDIAL 285 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~ 285 (1038)
.++..+...+|..+++.+++.+-.++++..... +..-|...|...|......|+..-..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 344444444555555555555555544444332 33344444555555555555544333
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.93 E-value=15 Score=34.69 Aligned_cols=101 Identities=12% Similarity=-0.044 Sum_probs=57.2
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001645 196 ETYNTMLTIA---GEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLV 272 (1038)
Q Consensus 196 ~~~~~li~~l---~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 272 (1038)
...+.||.++ .+.++.++++.+++-+.-.. |.....-..-...+.+.|+|.+|+.+|+.+.+. .|.......|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHH
Confidence 3444455444 35678888888888887643 333333333344567888888888888888765 34444445555
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCcCC
Q 001645 273 RSLCNAGKGDIALEFYKEMAQKEMVLD 299 (1038)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~p~ 299 (1038)
..|....+-..=..+-+++.+.+-.|+
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGADPD 111 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCCChH
Confidence 555544332222333344555544433
No 282
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.56 E-value=39 Score=40.58 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCC
Q 001645 476 AVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSR-------TNEILKVLNNMQASK 539 (1038)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~ 539 (1038)
...++|-.+.++|++++|.++..+.... .......+...+..|....+ -+....-|++.....
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3455667777888888888887544432 23344556666666665422 234445555554443
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.27 E-value=76 Score=38.24 Aligned_cols=191 Identities=13% Similarity=0.072 Sum_probs=91.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---------cchHHHHHHHHHHcCCHhHHHHHHH--------HHHHcCCCCCHHHH
Q 001645 804 LCEVGMLQLAKSCMDVLRKVGFTV---------PLSYSLYIRALCRAGELEEALALLD--------EVKEERSKLDEFVF 866 (1038)
Q Consensus 804 ~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~ 866 (1038)
.+-.|++..|...+..+.+..... +..+....-.+...|+.+.|+..|. .....+...+...+
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 345578888888888777543211 1222333333455788999999997 34444444444444
Q ss_pred HHH----HHHHHhcCCHHH--HHHHHHHHHHc-CCCc--cHhhHHHH-HHHHHhcCC--HHHHHHHHHHHHHc---CCCC
Q 001645 867 GSL----IHGLVQRGQIEE--ALAKVETMKQA-GIYP--TVHVYTSF-VVHFFREKQ--VGRALEIFERMRQE---GCEP 931 (1038)
Q Consensus 867 ~~l----i~~~~~~g~~~~--A~~~~~~m~~~-g~~p--~~~~y~~l-i~~~~~~g~--~~~A~~~~~~m~~~---g~~p 931 (1038)
..+ |.-+......++ +.++++.+... .-.| +..++..+ +.++...-. ..++...+.+-.+. ....
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 332 111222222333 66666666541 1122 22333333 333322111 12333333332221 1111
Q ss_pred C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHH-----HHHHHHHHhcCChHHHHHHHHHHH
Q 001645 932 T---VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP---DFRTY-----SMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 932 d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~-----~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+ ..+++.|..-+. .|+..+..++.........+. ....| ..+.+.|...|+.++|.+...+..
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 2 223333333333 577777666655543321111 33445 344555777888888888877654
No 284
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.76 E-value=59 Score=36.50 Aligned_cols=185 Identities=16% Similarity=0.167 Sum_probs=111.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001645 193 HATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLV 272 (1038)
Q Consensus 193 ~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 272 (1038)
.|....-+++++++.+....-++.+..+|...| -+-..|..++..|..+ ..+.-..+|+++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 466667778888888888888888888887754 5667777888888777 556677777777765422 333323333
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 001645 273 RSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIR 352 (1038)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 352 (1038)
.-| ..++...+..+|.....+=+ -..+.....++|.++... . ..+.+
T Consensus 140 ~~y-Ekik~sk~a~~f~Ka~yrfI---------------~~~q~~~i~evWeKL~~~--i---------------~dD~D 186 (711)
T COG1747 140 DKY-EKIKKSKAAEFFGKALYRFI---------------PRRQNAAIKEVWEKLPEL--I---------------GDDKD 186 (711)
T ss_pred HHH-HHhchhhHHHHHHHHHHHhc---------------chhhhhhHHHHHHHHHHh--c---------------cccHH
Confidence 333 33666666666666544311 122223334445444331 0 13444
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 001645 353 EALEFIRNLKSK-EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGY 414 (1038)
Q Consensus 353 ~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 414 (1038)
..+.+...+... |...-...+.-+-.-|....++++|.+++..+.+.+..+..+...+|..+
T Consensus 187 ~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 187 FFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 445554444432 33333455666667788888888888888888888777766655555543
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.60 E-value=8.9 Score=37.43 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH--H
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT--VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP-DFRTYS--M 973 (1038)
Q Consensus 899 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~--~ 973 (1038)
..+..+.+.|++.|+.+.|.+.|.++.+....+. ...+-.+|......|++..+...+.++...--.. |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566677777777777777777777776533333 3345566777777777777777776665431111 222211 1
Q ss_pred H--HHHHHhcCChHHHHHHHHHHH
Q 001645 974 F--IGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 974 l--~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
. .-.+...|++.+|.++|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 222345788888888876664
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.01 E-value=22 Score=33.03 Aligned_cols=64 Identities=3% Similarity=-0.101 Sum_probs=41.8
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 196 ETYNTMLTIA---GEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYG 260 (1038)
Q Consensus 196 ~~~~~li~~l---~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 260 (1038)
...+.||+++ ....++++++.+++.|.-.. |.....-..-...+...|+|++|+++|+++.+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3444455444 34688888888888887643 2223333333445678899999999999988764
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.37 E-value=0.79 Score=30.48 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=20.5
Q ss_pred HHHHHHcCCCCcchHHHHHHHHHHcCCHhHHH
Q 001645 817 MDVLRKVGFTVPLSYSLYIRALCRAGELEEAL 848 (1038)
Q Consensus 817 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 848 (1038)
+++.++..|.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455556666666777777777777776664
No 288
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=85.04 E-value=67 Score=35.49 Aligned_cols=85 Identities=11% Similarity=0.204 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIV 306 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 306 (1038)
|-|..+|-.||.-|...+..++-.+++++|..- ++--..+|...+++=....+++.++.+|.+.....+ +...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 667778888888888888888888888888631 122345677777776777788888888877766543 45566666
Q ss_pred HHHHHhcC
Q 001645 307 MNCAAKLG 314 (1038)
Q Consensus 307 i~~~~~~g 314 (1038)
+..-.+.+
T Consensus 116 l~YIRr~n 123 (660)
T COG5107 116 LEYIRRVN 123 (660)
T ss_pred HHHHHhhC
Confidence 65544443
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.51 E-value=38 Score=32.24 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=49.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhc
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEF-VFGSLIH--GLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFRE 911 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 911 (1038)
.......|+..+|...|+++......|-.. -..-|=. .+...|.+++.....+-+-..+-+.....-..|.-+-.+.
T Consensus 101 at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka 180 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA 180 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc
Confidence 334556677777777777776643333222 1111111 2334566666666555554444333444445555566666
Q ss_pred CCHHHHHHHHHHHHHc
Q 001645 912 KQVGRALEIFERMRQE 927 (1038)
Q Consensus 912 g~~~~A~~~~~~m~~~ 927 (1038)
|++.+|.+.|+.+.+.
T Consensus 181 gd~a~A~~~F~qia~D 196 (221)
T COG4649 181 GDFAKAKSWFVQIAND 196 (221)
T ss_pred cchHHHHHHHHHHHcc
Confidence 6666666666666543
No 290
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.21 E-value=13 Score=35.97 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=44.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcc-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 001645 871 HGLVQRGQIEEALAKVETMKQAGIYPT-----VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTALIQGFA 944 (1038)
Q Consensus 871 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~ 944 (1038)
+-+.+.|++++|..-|......- ++. .+.|..=..++.+.+.++.|+.-..+.++.+ |+ ....-.-..+|-
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 33566666666666666665531 221 1223333344555555555555555554432 21 111112233455
Q ss_pred hcCCHHHHHHHHHHHHHcCCC
Q 001645 945 NLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+..++++|+.=|.++.+..|.
T Consensus 180 k~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcc
Confidence 555566666666666555443
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.13 E-value=41 Score=32.27 Aligned_cols=48 Identities=15% Similarity=0.453 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh
Q 001645 286 EFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDA 337 (1038)
Q Consensus 286 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 337 (1038)
++.+.+.+.++.|+...|..++..+.+.|.+.... .++..++.+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~ 62 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKP 62 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHH
Confidence 45555556666777777777777777776654433 3333444444443
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.55 E-value=2.3 Score=28.61 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFER 923 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~ 923 (1038)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.94 E-value=43 Score=31.68 Aligned_cols=52 Identities=15% Similarity=0.010 Sum_probs=27.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 001645 382 IAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKES 433 (1038)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 433 (1038)
+.++.++++.+++.+..-.+.....-..-...+...|++.+|+.+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4456666666666665554443333333334445556666666666665443
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.25 E-value=85 Score=34.58 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---cHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 862 DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYP---TVHVYTSFVVHFFREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 862 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 926 (1038)
...+|..+...+.+.|.++.|...+..+.+.+... +..+.-.-+..+...|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456666666667777777776666666532111 223333344555666666677666666655
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.07 E-value=14 Score=36.04 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLDE--FVFGSLIHGLVQRGQIEEALAKVETM 889 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m 889 (1038)
..+..+...|++.|+.++|++.|.++.+....+.. ..+-.+|......+++..+.....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556666666666666666666665554322222 12334444444455555544444443
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.76 E-value=8.5 Score=43.61 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=20.7
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 840 RAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETM 889 (1038)
Q Consensus 840 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 889 (1038)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3444555544443321 3344555555555555555555544443
No 297
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.67 E-value=7 Score=38.43 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF--PDFRTYSMFIGC 977 (1038)
Q Consensus 900 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l~~~ 977 (1038)
|.+.-+..+.+.+.+.+|+...+.-.+.+ +.|..+-..+++.||-.|++++|..-++-.-+..+. +-...|.+++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777888899999998888777652 346667777889999999999999888877765443 234455555543
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC
Q 001645 978 LCKVGKSEEALELLSEMTESGIVPS 1002 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~g~~p~ 1002 (1038)
....++..+.+..|.
T Consensus 82 ----------ea~R~evfag~~~Pg 96 (273)
T COG4455 82 ----------EAARNEVFAGGAVPG 96 (273)
T ss_pred ----------HHHHHHHhccCCCCC
Confidence 233444455555553
No 298
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.85 E-value=13 Score=38.66 Aligned_cols=99 Identities=13% Similarity=0.186 Sum_probs=54.0
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 001645 403 DGKIYGIIIGGYLRKNDLSKALVQFERMKESG---YLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTA 479 (1038)
Q Consensus 403 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~ 479 (1038)
+..+...++..-....+++.+...+-++...- ..|+... ..+++.|. .-+.+++..++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 33344444444445555555555555554321 1121111 11222222 2345566666666677777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 480 MVAGHVRQDNLSEAWKVFKCMEDK 503 (1038)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~ 503 (1038)
+|+.+.+.+++.+|..+...|...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777766666544
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.14 E-value=4.1 Score=26.78 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 970 TYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 970 ~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+|..++.+|...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555543
No 300
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.12 E-value=8.2 Score=40.44 Aligned_cols=92 Identities=21% Similarity=0.192 Sum_probs=56.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 001645 871 HGLVQRGQIEEALAKVETMKQAGIYP-TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKV 949 (1038)
Q Consensus 871 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 949 (1038)
+-|.+.|.+++|+..|..-... .| |.++|..=..+|.+...+..|+.=.+..+..+ ..=...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 5588899999999888776543 45 77888888888888888887776666655321 00011222222222334556
Q ss_pred HHHHHHHHHHHHcCCC
Q 001645 950 AEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 950 ~~A~~~~~~m~~~~~~ 965 (1038)
.+|.+-++..++..+.
T Consensus 182 ~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhHHHHHhhCcc
Confidence 6666666666555443
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.04 E-value=4.6 Score=26.40 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 970 TYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 970 ~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.|..+..+|...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666665553
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.41 E-value=4.8 Score=27.83 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 969 RTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 969 ~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.+++.|..+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5677888888888888888888887663
No 303
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.36 E-value=1.5e+02 Score=35.12 Aligned_cols=248 Identities=15% Similarity=0.066 Sum_probs=122.0
Q ss_pred HHcCChHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhhc--CC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001645 733 GRAGLTEMAMRVFEDMKA-------NGCNPSGSTYKYLIISLSGRK--GR-KVDHAIKIFQEMVNAGHIPDKELVETYLD 802 (1038)
Q Consensus 733 ~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~--~~-~~~~A~~~~~~m~~~~~~~d~~~~~~li~ 802 (1038)
....+.+.|+..|+.+.. .|..+ ...-+-..+.... .. +...|..++......|. |+.... +..
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~ 333 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGV 333 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHH--HHH
Confidence 345567777777776655 44222 1111222222110 11 45567777776666653 222221 112
Q ss_pred HHHhc---CCHHHHHHHHHHHHHcCCCCcchHHHHHHHHH--HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 803 CLCEV---GMLQLAKSCMDVLRKVGFTVPLSYSLYIRALC--RAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRG 877 (1038)
Q Consensus 803 ~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 877 (1038)
++... .+...|.+.|....+.|......+-.++.... -..+...|..++.+..+.| .|....-...+..+.. +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 22111 24567777777777776544333322222222 2336778888888888876 3333333334444444 7
Q ss_pred CHHHHHHHHHHHHHcCCCccHhhHHHHHHHH---Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---C
Q 001645 878 QIEEALAKVETMKQAGIYPTVHVYTSFVVHF---FR----EKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANL---G 947 (1038)
Q Consensus 878 ~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~---~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~---g 947 (1038)
..+.+...+..+.+.|..-....-..++... .. ..+.+.+...+.+....| +......|.+.|..- +
T Consensus 412 ~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTG 488 (552)
T ss_pred cccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCC
Confidence 7777777777766655332222111111111 01 224556666666665543 444444555444432 2
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 001645 948 -KVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCK----VGKSEEALELLSEMTE 996 (1038)
Q Consensus 948 -~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~l~~~m~~ 996 (1038)
+++.|...+....+.+ ......+...+-. .. +..|.+++....+
T Consensus 489 ~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASE 537 (552)
T ss_pred CChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHh
Confidence 3677777777776665 2232233333311 22 5667777766654
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.33 E-value=5.6 Score=26.08 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 935 TYTALIQGFANLGKVAEAWDVFYRMKIKG 963 (1038)
Q Consensus 935 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 963 (1038)
+|..+...|...|++++|+..|++.++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45555666666666666666666665543
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.25 E-value=67 Score=33.41 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMK 431 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (1038)
++....+.|..+|.+.+|.++.++...-++.+...|-.++..++..|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 456667778888888888888888888888887888888888888888777777666654
No 306
>PRK09687 putative lyase; Provisional
Probab=77.43 E-value=1e+02 Score=32.70 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhc
Q 001645 833 LYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRG-QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFRE 911 (1038)
Q Consensus 833 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 911 (1038)
..+.++++.|+ .+|+..+-.+.+. +|...-...+.++.+.+ ..+.+...+..+.. .++..+-...+.++.+.
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHcc
Confidence 33444444443 3444444444432 33333333334443332 12234444443332 34445555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 912 KQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK 962 (1038)
Q Consensus 912 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 962 (1038)
|+ ..|+..+-+.++.+ + .....+.+++..|.. +|...+.++.+.
T Consensus 220 ~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 220 KD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred CC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 55 33444444444321 2 123445555566553 455555555543
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.67 E-value=88 Score=31.52 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=16.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCC
Q 001645 945 NLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
..|.+++|+++|+++......
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 667888999999888765444
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.42 E-value=66 Score=29.97 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=33.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 001645 382 IAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESG 434 (1038)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 434 (1038)
..++.+++..+++.|.--.+.....-..-...+...|++.+|+++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36777777777777766555543333334445566777777777777776654
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.72 E-value=13 Score=38.79 Aligned_cols=103 Identities=19% Similarity=0.198 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 001645 365 EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV---DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMAST 441 (1038)
Q Consensus 365 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 441 (1038)
|......+...++..-....+++++...+-++...... ...+-.+.+..+. .-++++++.++..=...|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 34444555556665555567777777777666543221 1111222233222 2356677777777777788888888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 001645 442 YTELMQHLFKLNEYKKGCELYNEMLKR 468 (1038)
Q Consensus 442 ~~~ll~~~~~~~~~~~a~~l~~~m~~~ 468 (1038)
++.+|+.+.+.+++.+|.++.-.|+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888877777776654
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.00 E-value=52 Score=32.46 Aligned_cols=71 Identities=10% Similarity=-0.053 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChhHH
Q 001645 213 LLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKY---GFEPDAVAYKVLVRSLCNAGKGDIA 284 (1038)
Q Consensus 213 ~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~A 284 (1038)
.|.+.|-.+...+.--++.....|...|. ..+.++|+.++....+. +-.+|+..+.+|.+.+-+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443344444444444444 34555565555555432 1244555555555555555555544
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.53 E-value=6.8 Score=27.02 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 933 VVTYTALIQGFANLGKVAEAWDVFYRMKI 961 (1038)
Q Consensus 933 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 961 (1038)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888888888888888888765
No 312
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=74.34 E-value=1.5e+02 Score=32.92 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 798 ETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ 875 (1038)
Q Consensus 798 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 875 (1038)
..|+.-|...|++.+|..+..++---.+...+.+.+++.+.-+.|+-...+.++++.-..| .+|-+.|-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 4577888899999999999988766666667888999999999999888888888887764 4566667777654
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.27 E-value=8.3 Score=25.10 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 935 TYTALIQGFANLGKVAEAWDVFYRMKIKG 963 (1038)
Q Consensus 935 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 963 (1038)
.|..+...|.+.|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34555666666666666666666666543
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.95 E-value=25 Score=34.62 Aligned_cols=73 Identities=14% Similarity=0.012 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHH
Q 001645 915 GRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK---GPFPDFRTYSMFIGCLCKVGKSEEAL 988 (1038)
Q Consensus 915 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 988 (1038)
++|.+.|-.+...+.--++....+|..-| -..+.++|..++.+..+. +-.+|+..+..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666665544333444444444333 345666666666666653 22456666777777777777766664
No 315
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=73.36 E-value=1.3e+02 Score=31.71 Aligned_cols=136 Identities=12% Similarity=0.129 Sum_probs=72.4
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcC-C-ChhHHHHHHHHHHh-CCCcCCHHHHHHHHHHHHhcCChhH
Q 001645 243 AKLIGKALLVFEKMRK-YGFEPDAVAYKVLVRSLCNA-G-KGDIALEFYKEMAQ-KEMVLDLSLYKIVMNCAAKLGDVDA 318 (1038)
Q Consensus 243 ~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~-g-~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~ 318 (1038)
+..+.+|+.+|+.... ..+--|...-..+++..... + ....-.++.+-+.. .+-.++..+...++..+++.+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345567777764332 12344555666666665552 1 22222233333322 2345566666677777777777777
Q ss_pred HHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHH
Q 001645 319 VLSIADDMVRI-SQIPERDAYGCVLKSFCVSMRIREALEFIRN-----LKSKEISMDRDHFETLVK 378 (1038)
Q Consensus 319 a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~-----m~~~~~~p~~~~~~~li~ 378 (1038)
..++++.-... +...|...|...|+.....|+..-..++..+ ++..++..+...-..+-+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 77776665544 3444555577777777777776666555543 223344444444444333
No 316
>PF13934 ELYS: Nuclear pore complex assembly
Probab=71.16 E-value=43 Score=34.20 Aligned_cols=83 Identities=12% Similarity=0.144 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHh----
Q 001645 939 LIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLN---- 1014 (1038)
Q Consensus 939 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~---- 1014 (1038)
++.++...|+.+.|+++++.+.-. -.+......++.+ ..+|...||..+.+...+.. ....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~ 187 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECA 187 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhh
Confidence 344444455555555555543211 1122222222333 34455555555444433210 0223444444333
Q ss_pred ccCChhhhhcCCc
Q 001645 1015 REDNLYQITKRPF 1027 (1038)
Q Consensus 1015 ~~g~~~~~~~~~~ 1027 (1038)
+.+..+++.+.|+
T Consensus 188 ~~~~~~~Ll~LPl 200 (226)
T PF13934_consen 188 RSGRLDELLSLPL 200 (226)
T ss_pred hhhHHHHHHhCCC
Confidence 5555555555555
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.92 E-value=25 Score=29.82 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=16.6
Q ss_pred HcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 891 QAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMR 925 (1038)
Q Consensus 891 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 925 (1038)
...+.|+..+..+.+.+|.+.+++.-|..+|+-.+
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 318
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.91 E-value=2.7e+02 Score=34.08 Aligned_cols=222 Identities=16% Similarity=0.053 Sum_probs=122.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--------cchHHHHHHH-HHHcCCHhHHHHHHHHHHHc----CCCCCHHHH
Q 001645 800 YLDCLCEVGMLQLAKSCMDVLRKVGFTV--------PLSYSLYIRA-LCRAGELEEALALLDEVKEE----RSKLDEFVF 866 (1038)
Q Consensus 800 li~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~ 866 (1038)
.+.......++++|..+...+...-..+ -..|+.+-.. ....|++++|.++.+..... -..+..+.+
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 3445566778888888887766543321 1235544332 23467888888888777653 122345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHH---H--HHHHHhcCCHHH--HHHHHHHHHHc--CCC----CCH
Q 001645 867 GSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTS---F--VVHFFREKQVGR--ALEIFERMRQE--GCE----PTV 933 (1038)
Q Consensus 867 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~---l--i~~~~~~g~~~~--A~~~~~~m~~~--g~~----pd~ 933 (1038)
..+..+..-.|++++|..+.++..+..-.-++..+.. + ...+...|+... .+..|....+. +-+ +-.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 6677777788999999888777665322233333222 2 233456664332 33333333221 111 223
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCC----CCChhcH
Q 001645 934 VTYTALIQGFANL-GKVAEAWDVFYRMKIKGPFPDFRTYS--MFIGCLCKVGKSEEALELLSEMTESGI----VPSNINF 1006 (1038)
Q Consensus 934 ~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~~~ 1006 (1038)
-++..+..++.+. +...+|...++--....+.|-...+. .|+.++...|+.++|...+.++..... .++....
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 4455566666552 22333444444333344443333333 788999999999999999999875322 2344344
Q ss_pred HHHHHHH--hccCChhh
Q 001645 1007 RTIFFGL--NREDNLYQ 1021 (1038)
Q Consensus 1007 ~~l~~~~--~~~g~~~~ 1021 (1038)
...+... ...|+.++
T Consensus 661 ~~~v~~~lwl~qg~~~~ 677 (894)
T COG2909 661 AYKVKLILWLAQGDKEL 677 (894)
T ss_pred HHHhhHHHhcccCCHHH
Confidence 4444322 34555555
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.88 E-value=35 Score=37.68 Aligned_cols=129 Identities=17% Similarity=0.159 Sum_probs=76.4
Q ss_pred HHHHHHcCCHhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCC
Q 001645 835 IRALCRAGELEEALA-LLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQ 913 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 913 (1038)
|.--...|++-.|-+ ++.-+....-.|+.+..-+.| +...|.++.+.+.+...... +.....+..+++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 344445677666544 444444433445555544433 45678888887777666542 23455667777777778888
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001645 914 VGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDF 968 (1038)
Q Consensus 914 ~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 968 (1038)
+++|..+-+-|+...++. ...+. +.. .-...|-++++...|+++...+++-+.
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~i-aa~-sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTV-AAG-SADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHHHHhccccCChhheee-ecc-cHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 888888887777665532 22222 111 223456778888888887766555333
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.62 E-value=2e+02 Score=32.57 Aligned_cols=164 Identities=10% Similarity=0.043 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001645 299 DLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVK 378 (1038)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 378 (1038)
|.....+++..+.....+.-++.+..+|...| .+...|..++.+|..+ ..+.-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33444455555555555555555555555533 3344455555555555 344455555555555444 4444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 001645 379 GLCIAGRISDALEIVDIMMRRNLV------DGKIYGIIIGGYLRKNDLSKALVQFERMKES-GYLPMASTYTELMQHLFK 451 (1038)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~ 451 (1038)
-|-+ ++..++...|.++..+-.+ -...|.-++..- ..+.+.-+.+..++... |...-...+.-+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4443 6666666666655443322 012344443321 12344444444444432 333334445555555666
Q ss_pred cCChhHHHHHHHHHHHCC
Q 001645 452 LNEYKKGCELYNEMLKRG 469 (1038)
Q Consensus 452 ~~~~~~a~~l~~~m~~~g 469 (1038)
..++++|.+++..+++..
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 666667777666666654
No 321
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.93 E-value=1.2e+02 Score=34.55 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=8.4
Q ss_pred HHHHHHcCCHHHHHHHH
Q 001645 377 VKGLCIAGRISDALEIV 393 (1038)
Q Consensus 377 i~~~~~~g~~~~A~~~~ 393 (1038)
+...+..|+.+-+..++
T Consensus 139 Lh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 139 LHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 34444556655444443
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.85 E-value=7.1 Score=27.74 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=13.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 001645 974 FIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 974 l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455555555555555555555543
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=68.24 E-value=75 Score=27.08 Aligned_cols=62 Identities=10% Similarity=0.050 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 001645 210 ELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRK-YGFEPDAVAYKVLVR 273 (1038)
Q Consensus 210 ~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~ 273 (1038)
+.-++++-++.+....+.|++....+.+++|.+.+++..|+++|+.++. .| .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4445677777777777788888888888888888888888888887773 32 24445665554
No 324
>PRK09687 putative lyase; Provisional
Probab=67.90 E-value=1.7e+02 Score=31.05 Aligned_cols=48 Identities=8% Similarity=0.089 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001645 228 KNIKTWTILVSLYGKAKLI----GKALLVFEKMRKYGFEPDAVAYKVLVRSLCN 277 (1038)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 277 (1038)
+|...-...+.++++.|.. .+++..+..+... .|+...-...+.++..
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGH 117 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhc
Confidence 4555555555556655542 3455555544222 3444444444444443
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.39 E-value=74 Score=27.42 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=16.8
Q ss_pred HHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 890 KQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 890 ~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 926 (1038)
....+.|+..+..+.+.+|.+.+++.-|..+|+-...
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555443
No 326
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=67.38 E-value=1.9e+02 Score=31.43 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHh---cCCHHHHHHHH
Q 001645 845 EEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFR---EKQVGRALEIF 921 (1038)
Q Consensus 845 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~---~g~~~~A~~~~ 921 (1038)
+.-+.++++..+. .+-+...+-.++..+.+..+.++..+.|+++.... +-+...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 4556666666665 23445556666677777777777777777776542 3355566666655443 12355555555
Q ss_pred HHHHHc------CC------CC--CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 922 ERMRQE------GC------EP--TV---VTYTALIQGFANLGKVAEAWDVFYRMKIKGP 964 (1038)
Q Consensus 922 ~~m~~~------g~------~p--d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 964 (1038)
.+.++. +. .+ +. ..+..+...+..+|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554431 11 00 11 1122222334467888888888888777654
No 327
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=67.33 E-value=1.4e+02 Score=29.79 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLV 874 (1038)
Q Consensus 795 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 874 (1038)
.+||-+.--+...|+++.|.+.|+...+.++....+.-.-.-++--.|++.-|.+=|.+.-+. .|+..--...+-.-.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~--D~~DPfR~LWLYl~E 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD--DPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 455656556667777777777777777776544433322233344466777776665555443 122111111122222
Q ss_pred hcCCHHHHHHHH-HHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhc
Q 001645 875 QRGQIEEALAKV-ETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-------TVVTYTALIQGFANL 946 (1038)
Q Consensus 875 ~~g~~~~A~~~~-~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------d~~~~~~li~~~~~~ 946 (1038)
..-++.+|..-+ ++.. ..|..-|...|..|.- |++. ...+++++.+-. .- =..||--|..-|...
T Consensus 178 ~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADA-TDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHhcc
Confidence 333455554332 2222 2343444443333321 2111 122333333211 11 134677788888888
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 001645 947 GKVAEAWDVFYRMKIKGP 964 (1038)
Q Consensus 947 g~~~~A~~~~~~m~~~~~ 964 (1038)
|..++|..+|+-.+..++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 889999888888776543
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.06 E-value=38 Score=33.55 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 001645 374 ETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKES--GYLPMASTYTELMQ 447 (1038)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~ 447 (1038)
+..++.+.+.+.+.+|....+.-++..+.+...-..++..||-.|++++|..-++-.-.. ...+...+|..+|.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344455556666666666666666666665555666666666666666666555444332 11223345555554
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=66.11 E-value=7.8 Score=23.77 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 001645 971 YSMFIGCLCKVGKSEEALELLS 992 (1038)
Q Consensus 971 ~~~l~~~~~~~g~~~~A~~l~~ 992 (1038)
...+..+|...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666665554
No 330
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.82 E-value=3e+02 Score=33.15 Aligned_cols=183 Identities=13% Similarity=0.154 Sum_probs=103.6
Q ss_pred HHHHHHHHH-hCCCCC--CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC----CCh--hhHHHHHHHHhccCCHHHH
Q 001645 354 ALEFIRNLK-SKEISM--DRDHFETLVKGLC-IAGRISDALEIVDIMMRRNL----VDG--KIYGIIIGGYLRKNDLSKA 423 (1038)
Q Consensus 354 A~~~~~~m~-~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A 423 (1038)
|++.++.+. +..+.| +..++-.+...|. ...+++.|+..+++...... .+. .+-..++..|.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 556666665 333333 2345555666655 66788899888886643221 121 22345566666666655 8
Q ss_pred HHHHHHHHHC----CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHHHH
Q 001645 424 LVQFERMKES----GYLPMASTYTEL-MQHLFKLNEYKKGCELYNEMLKRG---IQPDSVAVTAMVAGHV--RQDNLSEA 493 (1038)
Q Consensus 424 ~~~~~~m~~~----g~~p~~~t~~~l-l~~~~~~~~~~~a~~l~~~m~~~g---~~p~~~~~~~li~~~~--~~g~~~~A 493 (1038)
...+++..+. +..+-...|..+ +..+...++...|.+.++.+.... ..|-..++-.++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 8888776543 222233334443 333333478888888888876642 2334444545554443 44556777
Q ss_pred HHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 001645 494 WKVFKCMEDKG---------IRPTRKSYSVFIKELC--RVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 494 ~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 537 (1038)
.+.++++.... -.|-..+|..+++.++ ..|+++.+...++++..
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77776663321 1235566777766554 56777777776666654
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.37 E-value=1.4e+02 Score=29.26 Aligned_cols=93 Identities=12% Similarity=0.010 Sum_probs=62.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001645 904 FVVHFFREKQVGRALEIFERMRQEGCEPT--VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKV 981 (1038)
Q Consensus 904 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 981 (1038)
+...+..+|++++|+.-++..+..-..-+ ...--.|.......|.+++|++.++...+.+.. ...-..-.+++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 34566778888888888887664211111 122234456667888889998888887665433 22344557888888
Q ss_pred CChHHHHHHHHHHHHCC
Q 001645 982 GKSEEALELLSEMTESG 998 (1038)
Q Consensus 982 g~~~~A~~l~~~m~~~g 998 (1038)
|+-++|..-|+..++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999888888765
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.74 E-value=1.5e+02 Score=29.06 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=24.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001645 343 KSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRR 399 (1038)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 399 (1038)
+.....|.+++|+..++.....+.. ......-.+.+...|+-++|..-|+.....
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 4444455555555555544433322 112222334444555555555555444444
No 333
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.94 E-value=2.7e+02 Score=31.49 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=58.4
Q ss_pred HHHHcCCHhHHHHHHHHHHH---cCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCcc----
Q 001645 837 ALCRAGELEEALALLDEVKE---ERSKLD-----EFVFGSLIHGLVQRGQIEEALAKVETMKQ-------AGIYPT---- 897 (1038)
Q Consensus 837 ~~~~~g~~~~A~~~~~~m~~---~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~---- 897 (1038)
.+.-.|++.+|.+++...-- .|...+ -..||.|.-.+.+.|.+.-+..+|....+ .|+.|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34456777777777654321 121111 12345565556666777666666666543 344443
Q ss_pred -------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 898 -------VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFA 944 (1038)
Q Consensus 898 -------~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 944 (1038)
..+||+ .-.|...|+.-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 133443 23455667777777777666653 3556666666666665
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.42 E-value=2.1e+02 Score=30.06 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCh
Q 001645 937 TALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE-----SGIVPSN 1003 (1038)
Q Consensus 937 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~ 1003 (1038)
+.....|..+|.+.+|.++-++....++- +...|-.|+..|...|+--+|.+-+++|.+ -|+.-+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd 353 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD 353 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence 45556778888888888888888877766 778888888888888887778777777752 4555544
No 335
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.76 E-value=63 Score=27.66 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001645 914 VGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSE 993 (1038)
Q Consensus 914 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~ 993 (1038)
.++|..+-+-+...+-. ...+--+-+..++..|++++|..+.+.+ +.||...|..| +-.+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHH
Confidence 45666665555543211 1222122234567888888888888776 57788887665 44577777777777777
Q ss_pred HHHCCCCCChhcHH
Q 001645 994 MTESGIVPSNINFR 1007 (1038)
Q Consensus 994 m~~~g~~p~~~~~~ 1007 (1038)
|..+| .|....|.
T Consensus 94 la~sg-~p~lq~Fa 106 (115)
T TIGR02508 94 LAASG-DPRLQTFV 106 (115)
T ss_pred HHhCC-CHHHHHHH
Confidence 77665 34443443
No 336
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.73 E-value=3.4e+02 Score=33.74 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=26.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001645 344 SFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIA 383 (1038)
Q Consensus 344 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 383 (1038)
.|+.....+-+..+++.+....-.++....+.++..|++.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 4555666677777777776665555666777777777653
No 337
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.73 E-value=1.2e+02 Score=27.72 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 001645 930 EPTVVTYTALIQGFANLGK---VAEAWDVFYRMKI-KGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSN 1003 (1038)
Q Consensus 930 ~pd~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 1003 (1038)
.++..+-..+..++.+..+ ..+++.+++.+.+ ..+.-.......|.-++.+.|++++++++++.+.+ ..||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 4555555566666665544 4466677777765 33333334444555667777777777777777765 34544
No 338
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=61.50 E-value=54 Score=34.70 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=44.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 001645 802 DCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKE 856 (1038)
Q Consensus 802 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 856 (1038)
+-|.+.|.+++|+.++.......+.+++.+..-..+|.+..++..|..-.+....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4577888899999999888888888888888888888888888877766665554
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=61.19 E-value=21 Score=23.16 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 969 RTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 969 ~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.+|..+..+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567777788888888888888877664
No 340
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.94 E-value=1.2e+02 Score=29.79 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=27.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 001645 344 SFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV 402 (1038)
Q Consensus 344 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (1038)
++.+.+.++.|++--....+.++. .......-..+|.+...+++|++=++.+.+.++.
T Consensus 143 a~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 143 ALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 344444444444443333333221 1122223344566666666666666666666554
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=60.91 E-value=1.1e+02 Score=26.43 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 774 KVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKV 823 (1038)
Q Consensus 774 ~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 823 (1038)
+.-+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++++.+..+
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33455556666667778888888888888888888888888888777654
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=60.85 E-value=3.7e+02 Score=32.42 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 001645 514 VFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVI 551 (1038)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 551 (1038)
.....+.-.|+++.|++++-+ ..+...+.+.+...+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL 298 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIAL 298 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHH
Confidence 344567778999999988876 223334444444433
No 343
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.74 E-value=1.5e+02 Score=28.76 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcC
Q 001645 845 EEALALLDEVKEERSKLDE-FVFGSLIHGLVQRG----Q-------IEEALAKVETMKQAGIYPTVHVYTSFVVHFFREK 912 (1038)
Q Consensus 845 ~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g 912 (1038)
++|+.=|++... +.|+. .++..+..+|...+ + +++|...|++..+ ..|+...|+.-+...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~---- 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH----
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH----
Confidence 334444444444 34543 45666666665433 2 2233333333333 256666666555543
Q ss_pred CHHHHHHHHHHHHHcC
Q 001645 913 QVGRALEIFERMRQEG 928 (1038)
Q Consensus 913 ~~~~A~~~~~~m~~~g 928 (1038)
++|-+++.++.+.+
T Consensus 124 --~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 124 --AKAPELHMEIHKQG 137 (186)
T ss_dssp --HTHHHHHHHHHHSS
T ss_pred --HhhHHHHHHHHHHH
Confidence 23555555555443
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.67 E-value=2.1e+02 Score=29.48 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHH-cCCCCCHHHHHHHHH----HHHHcCChHHHHHHHHHHHH
Q 001645 688 ATYNMAIKTAGRGKDFKHMRNLFYEMRR-NGYLITPDTWTIMMM----QYGRAGLTEMAMRVFEDMKA 750 (1038)
Q Consensus 688 ~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~ 750 (1038)
.+|..=|++|...++-.....+++.... +.-.|.+.....+-. ...+.|.+++|..-|-+..+
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 4556666777777776777777776543 223344444333221 23567888888765554443
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=60.66 E-value=15 Score=23.62 Aligned_cols=26 Identities=23% Similarity=0.499 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 971 YSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 971 ~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+-.++.+|.+.|++++|.+.++++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45677888888999999999988875
No 346
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=60.15 E-value=2.5 Score=39.70 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001645 834 YIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVE 887 (1038)
Q Consensus 834 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 887 (1038)
+|..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 345555555555555666665554444445555555566655555444444444
No 347
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=60.10 E-value=2.6e+02 Score=30.43 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHH---cCCHhHHHHHHH
Q 001645 776 DHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCR---AGELEEALALLD 852 (1038)
Q Consensus 776 ~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 852 (1038)
+.-+.++++.++.+. .+......++..+.+....+...+-++.+....+..+..|...++.... .-.++....+|.
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 344556666555532 4455666667777777777777777777777777667777766665544 224556555555
Q ss_pred HHHHc------CC----CCCHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 853 EVKEE------RS----KLDEFV-------FGSLIHGLVQRGQIEEALAKVETMKQAGI 894 (1038)
Q Consensus 853 ~m~~~------g~----~p~~~t-------~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 894 (1038)
+..+. |. .+-..+ +.-+..-+.++|..+.|..+++.+.+.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 54431 11 011112 22223334567888888888888887654
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.60 E-value=93 Score=35.81 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001645 197 TYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLC 276 (1038)
Q Consensus 197 ~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 276 (1038)
.-+.+++.+-+.|-.++|+++- +|..-- .....+.|+.+.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 4555666666666555555432 222111 112345667777766655443 4556777777777
Q ss_pred cCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001645 277 NAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALE 356 (1038)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 356 (1038)
+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. . ...-+|...|+++++++
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~--N----~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN--N----LAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc--c----hHHHHHHHcCCHHHHHH
Confidence 77777777777765543 345555666666666666555555555432 1 12234455677777777
Q ss_pred HHHH
Q 001645 357 FIRN 360 (1038)
Q Consensus 357 ~~~~ 360 (1038)
++..
T Consensus 743 lLi~ 746 (794)
T KOG0276|consen 743 LLIS 746 (794)
T ss_pred HHHh
Confidence 6654
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=58.41 E-value=3.1e+02 Score=30.78 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=59.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 001645 382 IAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCEL 461 (1038)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l 461 (1038)
..|++-.|.+-+.......+.++.........+...|+++.+...+...... +.....+...+++...+.+++++|..+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 4455555544444444333333222222233344456666666665544332 223445566666666666777777766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 462 YNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDK 503 (1038)
Q Consensus 462 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (1038)
-.-|+...++ +..+.+.-....-..|-++++.-.|+++...
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 6666665544 2222222222222334556666666665543
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.26 E-value=1.1e+02 Score=26.31 Aligned_cols=84 Identities=13% Similarity=0.274 Sum_probs=58.6
Q ss_pred chhHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 175 PHLALRFFNWVKLREGFCHATETYNTMLT--IAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLV 252 (1038)
Q Consensus 175 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~--~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (1038)
.+.|..+-+|+.... +..-.-.||+ .+...|+|++|..+.+.+ +.||...|-+|-. .+.|..+.+..-
T Consensus 21 HqEA~tIAdwL~~~~----~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~r 90 (115)
T TIGR02508 21 HQEANTIADWLHLKG----ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESR 90 (115)
T ss_pred HHHHHHHHHHHhcCC----chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHH
Confidence 457888889986443 2233334444 566789999998888776 4788888877754 477888888888
Q ss_pred HHHHHhCCCCCCHHHHH
Q 001645 253 FEKMRKYGFEPDAVAYK 269 (1038)
Q Consensus 253 ~~~m~~~g~~p~~~~~~ 269 (1038)
+.+|...| .|....|-
T Consensus 91 l~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 91 LNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 88888777 55555553
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.25 E-value=3.8e+02 Score=33.32 Aligned_cols=195 Identities=16% Similarity=0.087 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC---cchHHHHHHHHHHcCCH--hHHHHHHHHHHHcCCCCCHHHHHHH
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRKVGF-TV---PLSYSLYIRALCRAGEL--EEALALLDEVKEERSKLDEFVFGSL 869 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~l 869 (1038)
.|..|+..|...|+.++|.+++.++.+..- .+ ...+--++..+.+.+.. +-.+++-+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl-------------- 571 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVL-------------- 571 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhh--------------
Confidence 466777777777777777777777666431 11 11122222222222221 22222222221
Q ss_pred HHHHHhcCCHHHHHHHHHH---HHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001645 870 IHGLVQRGQIEEALAKVET---MKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANL 946 (1038)
Q Consensus 870 i~~~~~~g~~~~A~~~~~~---m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 946 (1038)
..+.+.+.++|.. -....+.++. +-.|......+-++.+++.+....-.++..-.+.++..|+..
T Consensus 572 ------~~~p~~gi~Ift~~~~~~~~sis~~~------Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 572 ------NKNPEAGIQIFTSEDKQEAESISRDD------VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ------ccCchhheeeeeccChhhhccCCHHH------HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 3344555555554 0112222222 234455666677777777777655455666666666666532
Q ss_pred --------CCHHHHHHH--HHH---HHHc--CC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------
Q 001645 947 --------GKVAEAWDV--FYR---MKIK--GP--------FPDFRTYSMFIGCLCKVGKSEEALELLSEMTE------- 996 (1038)
Q Consensus 947 --------g~~~~A~~~--~~~---m~~~--~~--------~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~------- 996 (1038)
++.+++.+. .++ +.+. .. .+...-|......+.+.|+-++|+.++-..+.
T Consensus 640 v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~ 719 (877)
T KOG2063|consen 640 VLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAES 719 (877)
T ss_pred HhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 112222222 111 1111 11 11233455555566678888888887766543
Q ss_pred -----C-CCCCChhcHHHHHHHHhcc
Q 001645 997 -----S-GIVPSNINFRTIFFGLNRE 1016 (1038)
Q Consensus 997 -----~-g~~p~~~~~~~l~~~~~~~ 1016 (1038)
. ...++...|.+++..+...
T Consensus 720 Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 720 YCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred HHHHhccCCCcccHHHHHHHHHHhcc
Confidence 1 2334677777777766554
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=57.08 E-value=19 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 938 ALIQGFANLGKVAEAWDVFYRMKIKG 963 (1038)
Q Consensus 938 ~li~~~~~~g~~~~A~~~~~~m~~~~ 963 (1038)
.+..++.+.|++++|.+.|+++++.-
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34455556666666666666665543
No 353
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.44 E-value=1.7e+02 Score=27.28 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 303 YKIVMNCAAKLGDVDAVLSIADDMVRISQ-----IPERDAYGCVLKSFCVSMR-IREALEFIRNLKSKEISMDRDHFETL 376 (1038)
Q Consensus 303 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l 376 (1038)
.|.++...+..+++.....+++.+..... .-+..+|.+++++..+..- --.+..+|.-|++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45566666666666666666666533211 1344467778877766555 34566777777777778888888888
Q ss_pred HHHHHHc
Q 001645 377 VKGLCIA 383 (1038)
Q Consensus 377 i~~~~~~ 383 (1038)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8776543
No 354
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=56.30 E-value=6.4 Score=36.87 Aligned_cols=54 Identities=7% Similarity=0.207 Sum_probs=28.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001645 271 LVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIAD 324 (1038)
Q Consensus 271 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 324 (1038)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444555555555566665554444455556666666666655555555444
No 355
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.87 E-value=18 Score=40.29 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=77.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 001645 906 VHFFREKQVGRALEIFERMRQEGCEPTVVTYTAL-IQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKS 984 (1038)
Q Consensus 906 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 984 (1038)
+.+...+.++.|..++.+.++. .||-..|.+. ..++.+.+++..|+.=+.++.+..|. -...|.-=..++.+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHH
Confidence 3445667788888888888874 6765555433 36788888888888888888877644 334444445555666667
Q ss_pred HHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCChhh
Q 001645 985 EEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 985 ~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 1021 (1038)
.+|+..|+.-.. +.|+..-+..+++-+......++
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHHHHHHHh
Confidence 777777766654 78998888888887766655544
No 356
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=55.21 E-value=21 Score=23.20 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 935 TYTALIQGFANLGKVAEAWDVFYRMKIK 962 (1038)
Q Consensus 935 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 962 (1038)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555566666666666666666666553
No 357
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.60 E-value=2.9e+02 Score=29.36 Aligned_cols=155 Identities=13% Similarity=0.083 Sum_probs=88.7
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhc----C--
Q 001645 843 ELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ----RGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFRE----K-- 912 (1038)
Q Consensus 843 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~----g-- 912 (1038)
+..+|.+.|..+.+.|..+ ....|...|.. ..+..+|..+|+..-+.|..+...+...+...|..- +
T Consensus 92 ~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 3556666666555544222 22223333333 236677777777777666444322233333333332 1
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----
Q 001645 913 -QVGRALEIFERMRQEGCEPTVVTYTALIQGFAN----LGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVG----- 982 (1038)
Q Consensus 913 -~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----- 982 (1038)
+...|...+.++.+.+ +......|...|.. ..+..+|..+|++..+.|. ......+. .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchh
Confidence 2346888888887765 33333344444432 3378899999999988875 33333333 555555
Q ss_pred ----------ChHHHHHHHHHHHHCCCCCChhcHH
Q 001645 983 ----------KSEEALELLSEMTESGIVPSNINFR 1007 (1038)
Q Consensus 983 ----------~~~~A~~l~~~m~~~g~~p~~~~~~ 1007 (1038)
+...|...+......|.......+.
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 7788888888888877776666666
No 358
>PRK10941 hypothetical protein; Provisional
Probab=53.10 E-value=1.1e+02 Score=32.12 Aligned_cols=78 Identities=14% Similarity=-0.020 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCChhcHHHHHHHHhc
Q 001645 937 TALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE-SGIVPSNINFRTIFFGLNR 1015 (1038)
Q Consensus 937 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~l~~~~~~ 1015 (1038)
+.+-.+|.+.++++.|++..+.+....|. |+.-+.--.-.|.+.|.+..|..=++...+ ..-.|++...+..+..+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 45556677777777777777777777666 666666666667777777777776666653 3444566666666655544
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=52.90 E-value=1.5e+02 Score=28.80 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCCccH-hhHHHHHHHHHhcC----C-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 880 EEALAKVETMKQAGIYPTV-HVYTSFVVHFFREK----Q-------VGRALEIFERMRQEGCEPTVVTYTALIQGFANLG 947 (1038)
Q Consensus 880 ~~A~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 947 (1038)
++|+.-|++... +.|+. .++.++..+|...+ + +++|.+.|++..+. .|+..+|+.-+....
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH---
Confidence 344444444444 34553 66667777665433 2 34455555555543 688888877766653
Q ss_pred CHHHHHHHHHHHHHc
Q 001645 948 KVAEAWDVFYRMKIK 962 (1038)
Q Consensus 948 ~~~~A~~~~~~m~~~ 962 (1038)
+|-++..++.+.
T Consensus 125 ---kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 ---KAPELHMEIHKQ 136 (186)
T ss_dssp ---THHHHHHHHHHS
T ss_pred ---hhHHHHHHHHHH
Confidence 344454444443
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.48 E-value=45 Score=27.19 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=24.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 910 REKQVGRALEIFERMRQEGCEP-T-VVTYTALIQGFANLGKVAEAWDVF 956 (1038)
Q Consensus 910 ~~g~~~~A~~~~~~m~~~g~~p-d-~~~~~~li~~~~~~g~~~~A~~~~ 956 (1038)
...+.++|+..|+..++.-..| + -.+...|+.+|+..|++.+.+++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665542222 1 134455566666666666655543
No 361
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.08 E-value=2.1e+02 Score=33.96 Aligned_cols=201 Identities=17% Similarity=0.232 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhh--------HHHHHHHHHhhcCC
Q 001645 705 HMRNLFYEMRRNGYLI---TPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGST--------YKYLIISLSGRKGR 773 (1038)
Q Consensus 705 ~a~~l~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~~ll~~~~~~~~~ 773 (1038)
+...++.+|+.+=-.| .+.+...++-.|-...+++..+++.+.++.. ||..- |.+....-.+++.|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 4456777887753333 3456666777788888899999999888874 43221 11111111223446
Q ss_pred ChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHH
Q 001645 774 KVDHAIKIFQEMVNA--GHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALL 851 (1038)
Q Consensus 774 ~~~~A~~~~~~m~~~--~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 851 (1038)
+-+.|+...-.+.+. .+.|| +||-+|++- ..|. +-+.|...+..+.|.+.|
T Consensus 258 DRakAL~~~l~lve~eg~vapD---------m~Cl~GRIY------KDmF------------~~S~ytDa~s~~~a~~Wy 310 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPD---------MYCLCGRIY------KDMF------------IASNYTDAESLNHAIEWY 310 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCc---------eeeeechhh------hhhh------------hccCCcchhhHHHHHHHH
Confidence 777777777666654 34566 456666542 2111 122344456677888888
Q ss_pred HHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 852 DEVKEERSKLDEFV---FGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEG 928 (1038)
Q Consensus 852 ~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g 928 (1038)
.+.-+ +.|+..+ +..|+.+-.+. ++... +|+..|+ ..| ..+++.|.+++-.++|+-..
T Consensus 311 rkaFe--veP~~~sGIN~atLL~aaG~~--Fens~----Elq~Igm-----kLn---~LlgrKG~leklq~YWdV~~--- 371 (1226)
T KOG4279|consen 311 RKAFE--VEPLEYSGINLATLLRAAGEH--FENSL----ELQQIGM-----KLN---SLLGRKGALEKLQEYWDVAT--- 371 (1226)
T ss_pred HHHhc--cCchhhccccHHHHHHHhhhh--ccchH----HHHHHHH-----HHH---HHhhccchHHHHHHHHhHHH---
Confidence 88776 5676654 44444443322 22221 1222221 222 33467787777777665432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 929 CEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGP 964 (1038)
Q Consensus 929 ~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 964 (1038)
| +.+-.-+.++.+|++..+.|.+..+
T Consensus 372 -------y---~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 372 -------Y---FEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred -------h---hhhhhhccCHHHHHHHHHHHhccCC
Confidence 2 2334455677788888888876644
No 362
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.88 E-value=3e+02 Score=28.02 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=15.5
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCC
Q 001645 412 GGYLRKNDLSKALVQFERMKESGYL 436 (1038)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~m~~~g~~ 436 (1038)
..-+..+++.+|+++|+++....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334566777777777777655443
No 363
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.61 E-value=1.6e+02 Score=29.80 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001645 969 RTYSMFIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 969 ~~~~~l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
...-.++..+.+.|+.++|.+.|.++...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 33445556666677777777777776643
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.39 E-value=1.6e+02 Score=30.72 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=53.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHH-----
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFF----- 909 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~----- 909 (1038)
|.+++..+++.+++...-+--+.--+.-......-|-.|.|.|.+..+.++-..-.+.--.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 778888888888776554433321122233444455667888888888777776654222223344666666554
Q ss_pred hcCCHHHHHHHH
Q 001645 910 REKQVGRALEIF 921 (1038)
Q Consensus 910 ~~g~~~~A~~~~ 921 (1038)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 468888887776
No 365
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.83 E-value=9.3e+02 Score=33.50 Aligned_cols=335 Identities=8% Similarity=-0.057 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHhhccCchhHHHHHHH-hhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001645 158 RFEPEVVDKVLKRCFKVPHLALRFFNW-VKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTIL 236 (1038)
Q Consensus 158 ~~~~~~~~~vl~~~~~~~~~a~~~f~~-~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~l 236 (1038)
.+.|.....+..--.+....|+-.++- -............|-.+-.+|+.-++++....+...-...+ ....-
T Consensus 1382 ~~iP~~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~------sl~~q 1455 (2382)
T KOG0890|consen 1382 DLIPSDTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP------SLYQQ 1455 (2382)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc------cHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCCh
Q 001645 237 VSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDV 316 (1038)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 316 (1038)
|......|+++.|...|+.+.+.+ ++...+++.++......|.+..+....+......-+--...++.=+.+--+.+++
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Q ss_pred hHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHcCCHHHHH
Q 001645 317 DAVLSIADDMVRISQIPERDAY-GCVLKSFCVSMRIREALEFIRNLKSKEISM-----DRDHFETLVKGLCIAGRISDAL 390 (1038)
Q Consensus 317 ~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~ 390 (1038)
+..+.... .+-.-+-.+. ..-+-.-.+..+.-.-.+.++.+.+.-+.| ...+|..-.+...+....-+-.
T Consensus 1535 D~~e~~l~----~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1535 DLLESYLS----DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhhhhh----cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHcCCCChhhHHH--------HHHHHhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHH
Q 001645 391 EIVDIMMRRNLVDGKIYGI--------IIGGYLRKNDLSKALVQFERMKESG---YLPMASTYTELMQHLFKLNEYKKGC 459 (1038)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~--------li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~ 459 (1038)
...+........+....+. ....+.+..++--|.+---.-.... -.--..+|....+..-+.|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001645 460 ELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIR 506 (1038)
Q Consensus 460 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 506 (1038)
..+-...+.+ -...+-...+.....|+...|+.++++..+....
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
No 366
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.71 E-value=2.7e+02 Score=28.41 Aligned_cols=37 Identities=32% Similarity=0.437 Sum_probs=26.7
Q ss_pred HHHHHHCCCCCChhcHHH--HHHHHhccCChhhhhcCCc
Q 001645 991 LSEMTESGIVPSNINFRT--IFFGLNREDNLYQITKRPF 1027 (1038)
Q Consensus 991 ~~~m~~~g~~p~~~~~~~--l~~~~~~~g~~~~~~~~~~ 1027 (1038)
++-|.+--+.|+.+||.. +...+.+-|.++.++..|.
T Consensus 218 ~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~L 256 (284)
T KOG4642|consen 218 LELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPL 256 (284)
T ss_pred HHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccC
Confidence 344555557788888754 6778888899888887775
No 367
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.69 E-value=3.7e+02 Score=28.78 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCH----
Q 001645 723 DTWTIMMMQYGRAGLTEMAMRVFEDMKA----NGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDK---- 794 (1038)
Q Consensus 723 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~---- 794 (1038)
..+-....-|++.|+.+.|++.++...+ .|.+-|..-+..-+.-+.. ...-+.+-++-.+.+.+.|...+.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~-D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL-DHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 3455566678888888888877665443 4667777666555555443 122344555555566666655443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKVG 824 (1038)
Q Consensus 795 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 824 (1038)
.+|..+ -|....++.+|-.+|-+.....
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHcccc
Confidence 222222 1334467777877777666544
No 368
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=48.63 E-value=4e+02 Score=29.15 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001645 370 RDHFETLVKGLCIAGRISDALEIVDIMMRRNLV----DGKIYGIIIGGYLRKNDLSKALVQFERMKE 432 (1038)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 432 (1038)
..++..++..+.+.|.++.|...+..+...+.. .+.+...-+...-..|+..+|+..+++...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555566666666666666555543311 122233334444455555555555555544
No 369
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.42 E-value=38 Score=24.15 Aligned_cols=24 Identities=50% Similarity=0.612 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHc
Q 001645 834 YIRALCRAGELEEALALLDEVKEE 857 (1038)
Q Consensus 834 li~~~~~~g~~~~A~~~~~~m~~~ 857 (1038)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666666555543
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.62 E-value=39 Score=27.49 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=37.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHH
Q 001645 941 QGFANLGKVAEAWDVFYRMKIKGPFP--DFRTYSMFIGCLCKVGKSEEALEL 990 (1038)
Q Consensus 941 ~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~l 990 (1038)
..| ...+.++|+..|++..++-..+ -..+...++.+|+..|++++.+++
T Consensus 15 kLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 15 KLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 6677899999999998875443 235677888999999999888776
No 371
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=46.35 E-value=5.4e+02 Score=30.05 Aligned_cols=116 Identities=9% Similarity=0.070 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHH
Q 001645 387 SDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLF-KLNEYKKGCELYNEM 465 (1038)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~l~~~m 465 (1038)
+.+..+++.+..+.|.--.-|-.....-.+.|..+.+.++|++-... ++.....|...+..+. ..|+.+.....|+..
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 44444555555444443333444455555556666666666655432 3334444444433332 234455555555555
Q ss_pred HHC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 466 LKR-GIQ-PDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDK 503 (1038)
Q Consensus 466 ~~~-g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (1038)
... |.. -....|...|..-..++++.....+++++.+.
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 442 211 12345566666666666777777777776653
No 372
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.21 E-value=1.4e+02 Score=25.00 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001645 917 ALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEAL 988 (1038)
Q Consensus 917 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 988 (1038)
+.++++.+.++|+ .+......+-.+-...|+.+.|.+++..+. +|+. .+..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhhh
Confidence 5567777777663 333333333333335688888888888887 5443 6778888888877765554
No 373
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.99 E-value=1.7e+02 Score=25.59 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=37.0
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 001645 843 ELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFE 922 (1038)
Q Consensus 843 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 922 (1038)
..+||..+.+.+...+. -....--+-+..+...|++++|+.. ......||...|-+|.. .+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~----~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL----PQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH----HTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh----cccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45667766666666432 1122222233345566666666211 11223566666555443 35666666666666
Q ss_pred HHHHcC
Q 001645 923 RMRQEG 928 (1038)
Q Consensus 923 ~m~~~g 928 (1038)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665444
No 374
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.88 E-value=2.9e+02 Score=28.82 Aligned_cols=101 Identities=8% Similarity=0.040 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHH-H
Q 001645 722 PDTWTIMMMQYGRAGLTEMAMRVFEDMKA----NGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKE-L 796 (1038)
Q Consensus 722 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~-~ 796 (1038)
...|..+..-|++.++.+.+.+..++..+ .|.+-|......-+..... ...-+++-++..+.|++.|...+.. -
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~-d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYG-DRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 44555555566666666555554443322 2444444433333333332 1223455555555666655443321 1
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 001645 797 VETYLDC-LCEVGMLQLAKSCMDVLRKV 823 (1038)
Q Consensus 797 ~~~li~~-~~~~g~~~~A~~~~~~~~~~ 823 (1038)
|-+.-.. +....++.+|-.++.+....
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 1111111 12234455555555554443
No 375
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.77 E-value=80 Score=36.12 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=23.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 870 IHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 870 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 926 (1038)
...+.+.|-+.+|-.++.+..... .....++-++.++|....+++.|++-|+...+
T Consensus 649 a~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 649 ANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 333344444444444444433322 22223333444444444445555554444443
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.52 E-value=2e+02 Score=25.40 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 970 TYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 970 ~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888999998888876
No 377
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.43 E-value=2.1e+02 Score=29.85 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=10.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 001645 307 MNCAAKLGDVDAVLSIADDMVR 328 (1038)
Q Consensus 307 i~~~~~~g~~~~a~~~~~~m~~ 328 (1038)
|-.|.+.++...+.++-.....
T Consensus 125 ILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHh
Confidence 3334444554444444444443
No 378
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.02 E-value=6.6e+02 Score=30.41 Aligned_cols=101 Identities=13% Similarity=-0.013 Sum_probs=65.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 001645 203 TIAGEAKELELLEELEREMEINSCAK---NIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAG 279 (1038)
Q Consensus 203 ~~l~~~~~~~~a~~l~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 279 (1038)
+-+.+.+.+++|+++.+..... .+ -...+...|..+.-.|++++|-...-.|. .-+..-|-.-+.-+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhcccc
Confidence 3455667788888777665432 33 35678888888888999999988888887 345666666666666665
Q ss_pred ChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHh
Q 001645 280 KGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAK 312 (1038)
Q Consensus 280 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 312 (1038)
+..... .-+.......+...|..++..+..
T Consensus 438 ~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 554332 223333333566677777777655
No 379
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=43.97 E-value=40 Score=20.51 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 001645 971 YSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 971 ~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
|..+..+|...|++++|...++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444444443
No 380
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.26 E-value=3.7e+02 Score=30.34 Aligned_cols=137 Identities=15% Similarity=0.025 Sum_probs=58.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHcCCCh
Q 001645 206 GEAKELELLEELEREMEINSCAKNIKT--WTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAV--AYKVLVRSLCNAGKG 281 (1038)
Q Consensus 206 ~~~~~~~~a~~l~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~ 281 (1038)
.+.|+.+.+..+++ .|..++... ..+.+...++.|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.
T Consensus 10 ~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 34455544444443 344443322 223344445556554 333344455444332 112334455566776
Q ss_pred hHHHHHHHHHHhCCCcCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHH
Q 001645 282 DIALEFYKEMAQKEMVLDLS---LYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDA--YGCVLKSFCVSMRIREALE 356 (1038)
Q Consensus 282 ~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~A~~ 356 (1038)
+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..
T Consensus 82 ~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 82 KAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 66555443 22211100 0112233344556554 3444445565554322 1233444456676655444
Q ss_pred HH
Q 001645 357 FI 358 (1038)
Q Consensus 357 ~~ 358 (1038)
++
T Consensus 154 Ll 155 (413)
T PHA02875 154 LI 155 (413)
T ss_pred HH
Confidence 43
No 381
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.13 E-value=2.5e+02 Score=26.29 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=54.5
Q ss_pred CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCC
Q 001645 190 GFCHAT--ETYNTMLTIAGEAKELELLEELEREMEINSC-----AKNIKTWTILVSLYGKAKL-IGKALLVFEKMRKYGF 261 (1038)
Q Consensus 190 ~~~~~~--~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~ 261 (1038)
++.++. ...|.++.-++..+++.....+++.+..... ..+...|..++.+.++..- ---+..+|.-|++.+.
T Consensus 32 ~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~ 111 (145)
T PF13762_consen 32 NASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDI 111 (145)
T ss_pred ccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCC
Confidence 444443 3457888888888888888888887743210 2344556666666655444 3345566666666556
Q ss_pred CCCHHHHHHHHHHHHcC
Q 001645 262 EPDAVAYKVLVRSLCNA 278 (1038)
Q Consensus 262 ~p~~~~~~~ll~~~~~~ 278 (1038)
+.+..-|..++.++.+-
T Consensus 112 ~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 112 EFTPSDYSCLIKAALRG 128 (145)
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 66666666666665544
No 382
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=43.04 E-value=1.1e+02 Score=34.50 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001645 919 EIFERMRQEGCEPTVVT---YTALIQGFANLGKVAEAWDVFYRMKIKGP---FPDFRTYSMFIGCLCKVGKSEEALELLS 992 (1038)
Q Consensus 919 ~~~~~m~~~g~~pd~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~l~~ 992 (1038)
-+++.+.+.++-|++.+ -.+++.+..-....+|-..+|........ ..|...+...+.-|.+.|.+.+-..+.+
T Consensus 191 GVlrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~ 270 (543)
T KOG2214|consen 191 GVLRTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLAC 270 (543)
T ss_pred HHHHHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHH
Confidence 35566677778888765 45566666677778888888876654433 3455567788889999999999888888
Q ss_pred HHHHCCCCCChhcHHHHHHHHhccCChhhhhcCCc----------------eeehhhhhccC
Q 001645 993 EMTESGIVPSNINFRTIFFGLNREDNLYQITKRPF----------------AVILSTILEST 1038 (1038)
Q Consensus 993 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~~~~~~~----------------~~~~~~~~~~~ 1038 (1038)
-|...- ... +...+|.+.|+.-+|.-.|- -.||+++-+||
T Consensus 271 ~~~~~~---~~l---TFqEAY~rTGrIlNItV~p~s~~e~P~lLNylTaPnVLIWSAV~aSc 326 (543)
T KOG2214|consen 271 VMKKRL---GNL---TFQEAYDRTGRILNIVVPPSSKSEPPRLLNYLTAPNVLIWSAVCASC 326 (543)
T ss_pred HHHHHh---cch---hHHHHHHhhCceEEEEECccccCCChhHhhccCCCceehhHHHHHhc
Confidence 887531 133 34568888888887554433 68999999998
No 383
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.58 E-value=7.4e+02 Score=30.57 Aligned_cols=221 Identities=9% Similarity=0.049 Sum_probs=113.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 001645 311 AKLGDVDAVLSIADDMVRISQIPERD-------AYGCVLK-SFCVSMRIREALEFIRNLKSK----EISMDRDHFETLVK 378 (1038)
Q Consensus 311 ~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~-~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~ 378 (1038)
....++++|..+..+....-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34577888888888776643333322 2333321 223467888888887765543 23345666777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCChhhHHHHH--HHHhccCCH--HHHHHHHHHHHHC--CCC----CCHHHHHH
Q 001645 379 GLCIAGRISDALEIVDIMMRR----NLVDGKIYGIII--GGYLRKNDL--SKALVQFERMKES--GYL----PMASTYTE 444 (1038)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~li--~~~~~~g~~--~~A~~~~~~m~~~--g~~----p~~~t~~~ 444 (1038)
+..-.|++++|..+.....+. +...-..|..+. ..+...|+. .+....|...... +-+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999988887665543 333223344332 234445532 2222233322221 111 12334444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHH
Q 001645 445 LMQHLFKLNEYKKGCELYNEMLK----RGIQPDSVA--VTAMVAGHVRQDNLSEAWKVFKCMEDKGIR----PTRKSYSV 514 (1038)
Q Consensus 445 ll~~~~~~~~~~~a~~l~~~m~~----~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ 514 (1038)
++.++.+ ++.+..-...-.+ ....|-..- +..|+..+...|+.++|...++++...... ++..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555544 3332222222222 222222222 235677778889999998888887754322 23333223
Q ss_pred HHHHH--HhcCCHHHHHHHHHH
Q 001645 515 FIKEL--CRVSRTNEILKVLNN 534 (1038)
Q Consensus 515 li~~~--~~~g~~~~A~~~~~~ 534 (1038)
.++.. ...|+...+..+..+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 33332 345666666655554
No 384
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.84 E-value=2.2e+02 Score=24.89 Aligned_cols=77 Identities=18% Similarity=0.102 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001645 878 QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFY 957 (1038)
Q Consensus 878 ~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 957 (1038)
..+||..+.+-+...+- -...+--+-+..+...|++++|+. .-. ....||...|-+| +-.+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl--~~~--~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL--LPQ--CHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH--HHT--TS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH--hcc--cCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 44555555555554331 122222222334455566665511 111 1124555555444 2335555555555555
Q ss_pred HHHH
Q 001645 958 RMKI 961 (1038)
Q Consensus 958 ~m~~ 961 (1038)
++-.
T Consensus 94 rla~ 97 (116)
T PF09477_consen 94 RLAS 97 (116)
T ss_dssp HHCT
T ss_pred HHHh
Confidence 5433
No 385
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.65 E-value=1.5e+02 Score=24.85 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 001645 389 ALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKG 458 (1038)
Q Consensus 389 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 458 (1038)
+.++++.+.+++..+......+-.+-...|+.+.|.+++..+. .| | ..|..++.++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 3355556666665554444444443345566666666666666 43 1 2455566666555554433
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.44 E-value=1.2e+02 Score=34.87 Aligned_cols=149 Identities=12% Similarity=0.002 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001645 297 VLDLSLYKIVMNCAAKL--GDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFE 374 (1038)
Q Consensus 297 ~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 374 (1038)
-|+..+..+++.-.... ..-+-+-.++..|.. ..-|-....|..---+...|+...|.+.+.......+.-..+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 35555555544433222 123334444444433 222322223322222334578888887777665443333334455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001645 375 TLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQ 447 (1038)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 447 (1038)
.|...+.+.|...+|..++.+........+-++..+..+|....+.++|++.|++..+... -+...-+.|+.
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~~ 718 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLKL 718 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHHH
Confidence 5666677777888888888777666544445677788888888888888888888776532 23444444443
No 387
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.26 E-value=93 Score=23.24 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=15.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHH
Q 001645 974 FIGCLCKVGKSEEALELLSEMTESGIVPSNINFR 1007 (1038)
Q Consensus 974 l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 1007 (1038)
+.-++.+.|++++|.+..+.+++ +.|+.....
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 44455555555555555555554 445443333
No 388
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=39.51 E-value=1.6e+02 Score=24.84 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 001645 932 TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP-DFRTYSMFIGCLCKVGK 983 (1038)
Q Consensus 932 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~ 983 (1038)
|...-..+...+...|++++|++.+-.++...... +...-..|+.++.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34444455555556666666666555555543221 33444444444444444
No 389
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.49 E-value=4.9e+02 Score=27.57 Aligned_cols=17 Identities=6% Similarity=0.286 Sum_probs=8.8
Q ss_pred HHHHHHHHhccCCHHHH
Q 001645 407 YGIIIGGYLRKNDLSKA 423 (1038)
Q Consensus 407 ~~~li~~~~~~g~~~~A 423 (1038)
|..|+.+++..|+.+-+
T Consensus 324 yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 324 YAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhHHHHHHhcCChHHHH
Confidence 55555555555554433
No 390
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.12 E-value=7.8e+02 Score=29.83 Aligned_cols=249 Identities=12% Similarity=0.012 Sum_probs=126.8
Q ss_pred cCChHHHHHHHHHHHHcC-CCCChh--hHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 001645 735 AGLTEMAMRVFEDMKANG-CNPSGS--TYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQ 811 (1038)
Q Consensus 735 ~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~ 811 (1038)
..+.+.|..++....... +.+... ....+...... .+..+++...++...... .|......-+..-...++++
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~--~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMG--NDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHH
Confidence 445688999998875442 222222 12222222221 111556666666544322 24445555566666889999
Q ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHH-HH
Q 001645 812 LAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEE-ALAKVE-TM 889 (1038)
Q Consensus 812 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~~~~-~m 889 (1038)
.+...+..|.........-..=+.+++...|+.++|..+|+++... .+ |-.++.+ .+.|..-. ...... ..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~~~~~~~~~~~ 402 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG---FYPMVAA-QRLGEEYPLKIDKAPKPD 402 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC---cHHHHHH-HHcCCCCCCCCCCCCchh
Confidence 8888888875533333333344567777789999999999997542 22 3222221 11221100 000000 00
Q ss_pred HHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC
Q 001645 890 KQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKG----PF 965 (1038)
Q Consensus 890 ~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~ 965 (1038)
.. +.. ..-..-+..+...|....|...|..+... .+......+...-.+.|..+.+..........+ ..
T Consensus 403 ~~--~~~--~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf 475 (644)
T PRK11619 403 SA--LTQ--GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF 475 (644)
T ss_pred hh--hcc--ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC
Confidence 00 000 01112244556678888888888887763 344444555555557777777776665432210 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 001645 966 PDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSN 1003 (1038)
Q Consensus 966 ~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 1003 (1038)
| ..|...+..+.+.-.++.++-.---.++.++.|+.
T Consensus 476 p--~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 476 P--LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred C--cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 1 13555555555554555544332233456666654
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=38.17 E-value=70 Score=20.06 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 947 GKVAEAWDVFYRMKIKGPFPDFRTYSMFIG 976 (1038)
Q Consensus 947 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 976 (1038)
|+.+.|..+|+++....+. +...|..++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~-~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK-SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC-ChHHHHHHHH
Confidence 4556666666666665443 5555555543
No 392
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=37.90 E-value=7.2e+02 Score=29.08 Aligned_cols=184 Identities=14% Similarity=0.026 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 001645 687 SATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIIS 766 (1038)
Q Consensus 687 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 766 (1038)
..+|...+.--...|+++...-+|+...-.--. -...|--.+.-....|+.+-|..++....+--+ |+.... .++.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i-~L~~a 373 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPII-HLLEA 373 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHH-HHHHH
Confidence 466777777777788888888888776532111 233455555555556888888877776665432 232222 23333
Q ss_pred HHhhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHH---HHHHHHHcCCCCcchHHHHHH-----H
Q 001645 767 LSGRKGRKVDHAIKIFQEMVNAGHIPDK-ELVETYLDCLCEVGMLQLAKS---CMDVLRKVGFTVPLSYSLYIR-----A 837 (1038)
Q Consensus 767 ~~~~~~~~~~~A~~~~~~m~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~---~~~~~~~~~~~~~~~~~~li~-----~ 837 (1038)
......|+++.|..+++.+...- |.. .....-+....+.|+.+.+.. ++....+ |..+....+.+.- -
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHH
Confidence 33335568999999999887764 433 222333555667777777663 2222222 2222222222211 1
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 838 LCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRG 877 (1038)
Q Consensus 838 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 877 (1038)
+.-.++.+.|..++.++.+. .+++...|..+++-....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22355667777777777665 4555666666666555444
No 393
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.72 E-value=4.5e+02 Score=26.59 Aligned_cols=51 Identities=22% Similarity=0.133 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 915 GRALEIFERMRQEGCEP----T-VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 915 ~~A~~~~~~m~~~g~~p----d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
.+|.+.|++..+..-.| + ....-.+...+.+.|+.++|.++|.++...+-.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 45777777776543222 2 233345667777999999999999999876433
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.47 E-value=94 Score=24.09 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 001645 938 ALIQGFANLGKVAEAWDVFYRM 959 (1038)
Q Consensus 938 ~li~~~~~~g~~~~A~~~~~~m 959 (1038)
.+|.+|...|++++|.++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.88 E-value=1.3e+02 Score=29.69 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 930 EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK 962 (1038)
Q Consensus 930 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 962 (1038)
.|++.+|..++.++...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555555555555555555555555555443
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.35 E-value=1.6e+02 Score=29.12 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=29.0
Q ss_pred hcCCHHHHHHHHHHHHH-cCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 875 QRGQIEEALAKVETMKQ-AGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 875 ~~g~~~~A~~~~~~m~~-~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 926 (1038)
...+.+......+.+.+ ....|+..+|..++.++...|+.++|.+..+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444433333332 22356666666666666666666666666666654
No 397
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.59 E-value=7e+02 Score=28.25 Aligned_cols=44 Identities=18% Similarity=0.051 Sum_probs=25.3
Q ss_pred HHHHHHHHH---cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 832 SLYIRALCR---AGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ 875 (1038)
Q Consensus 832 ~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 875 (1038)
..++.++.+ ..+.+.|+..+..|.+.|..|....-..++.++..
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 334444443 36677777777777777766665554444444433
No 398
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.75 E-value=7.4e+02 Score=31.59 Aligned_cols=122 Identities=12% Similarity=0.069 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMKQA-G--IYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVV----TYT 937 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~~~-g--~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----~~~ 937 (1038)
.|-.+++.+-+.+..|++.++-....+. + .+.-..+++++.+.....|.+-+|...+-+ .||.. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 4667777778888888888876666542 1 111235567777777777777776554322 34433 345
Q ss_pred HHHHHHHhcCCHH------------HHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001645 938 ALIQGFANLGKVA------------EAWD-VFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLS 992 (1038)
Q Consensus 938 ~li~~~~~~g~~~------------~A~~-~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~ 992 (1038)
-|+-.++.+|.++ +... +++......+......|+.|-.-+...++|.+|-.+.-
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 5566666666553 3333 34433333333344556666666778888888776643
No 399
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=33.87 E-value=7.2e+02 Score=27.89 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 868 SLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG 947 (1038)
Q Consensus 868 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 947 (1038)
.|+.-|...|++.+|.+..+++-- .+---.+.+.+++.+.-+.|+-+.-+.++++.-.. ..+|-+.|-.+|.+..
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhhh
Confidence 456667777777777776665431 11123566777777777777766666666666543 3455566666666543
Q ss_pred --------CHHHHHHHHHHHHHcCCC
Q 001645 948 --------KVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 948 --------~~~~A~~~~~~m~~~~~~ 965 (1038)
++..|.+.|+...+.+..
T Consensus 589 dsl~DlsLDvPna~ekf~~~Ve~~~~ 614 (645)
T KOG0403|consen 589 DSLPDLSLDVPNAYEKFERYVEECFQ 614 (645)
T ss_pred ccCcccccCCCcHHHHHHHHHHHHHH
Confidence 234566666666655444
No 400
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.41 E-value=4e+02 Score=29.80 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=41.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEF--VFGSLIHGLVQ--RGQIEEALAKVETMKQA 892 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~--~g~~~~A~~~~~~m~~~ 892 (1038)
+..+...+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44555889999999999999887 555554 45555566654 56788888888887653
No 401
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.39 E-value=1.4e+02 Score=21.78 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=12.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 243 AKLIGKALLVFEKMRKYGFEPDAVAYKVL 271 (1038)
Q Consensus 243 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 271 (1038)
.|.++++..++++|.+.|+.-+...|..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 34444444444444444444444444433
No 402
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=33.29 E-value=1e+03 Score=29.59 Aligned_cols=124 Identities=19% Similarity=0.098 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAK 885 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 885 (1038)
+..--.+|..+-..|.+.. +++|.++++.|..-.-.+.++.-.+ -|.. ......+...+.
T Consensus 1159 k~D~r~da~klk~~me~qk-------~tli~AL~kKg~a~ak~e~l~g~~e----~dae---------ee~s~ld~~~e~ 1218 (1304)
T KOG1114|consen 1159 KEDTRPDAVKLKKKMEKQK-------DTLIDALVKKGEAFAKYEALKGHKE----QDAE---------EELSKLDSYNEN 1218 (1304)
T ss_pred ccCCcchHHHHHHHHHHHH-------HHHHHHHHHhhhHHhhhhhhccccc----ccch---------hhhhhhhhHHHH
Confidence 3333445666666665543 6778888877632211222211111 0111 111334455566
Q ss_pred HHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCH
Q 001645 886 VETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQ-EGCEPTVVTYTALIQGFANLGKV 949 (1038)
Q Consensus 886 ~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~~~~~li~~~~~~g~~ 949 (1038)
|.++.+.--.-|..++..-...+...|++..|.+++.++.+ .|-.++...|..++..+...|.-
T Consensus 1219 y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1219 YQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred HHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 66665532234556666666667777888888888888776 34466777777777777776654
No 403
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.10 E-value=42 Score=30.49 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001645 244 KLIGKALLVFEKMRKYGFEPDAVAYKVLVR 273 (1038)
Q Consensus 244 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 273 (1038)
|.-.+|-.+|.+|.+.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 334455555555555555555 3444444
No 404
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=32.88 E-value=7.3e+02 Score=27.66 Aligned_cols=185 Identities=14% Similarity=0.176 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHH
Q 001645 352 REALEFIRNLKSKEI--SMDRDHFETLVKGLCIAGRISDA-----LEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKAL 424 (1038)
Q Consensus 352 ~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A-----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 424 (1038)
+...++.+.|....- .|-+.-..++|..||+...++-. ..+++.+...+.+-...||..-..
T Consensus 72 ~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai----------- 140 (669)
T KOG3636|consen 72 NDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAI----------- 140 (669)
T ss_pred HHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhh-----------
Confidence 345555555543321 23344567788889888765422 223333333444433333332111
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 425 VQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKG 504 (1038)
Q Consensus 425 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (1038)
..+..-.++.|....|.. .+.+....+.+ +-..+-...+.||..+.|-+...++..-..+-...+|+-..+.+
T Consensus 141 --~~kYIPkdcrpkg~~Fh~-FRLLlqYHdPe----lc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa 213 (669)
T KOG3636|consen 141 --TTKYIPKDCRPKGQIFHL-FRLLLQYHDPE----LCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA 213 (669)
T ss_pred --hhcccCCCCCCCCccchH-HHHHHHhcCHH----HhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 112222344444433321 12222222322 22223334567777777777777777666677777776666554
Q ss_pred CCCCHHHHHHHHH---H-----HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 001645 505 IRPTRKSYSVFIK---E-----LCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCME 555 (1038)
Q Consensus 505 ~~p~~~~~~~li~---~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 555 (1038)
- |=.+-+-++|- + -.+...-++++++++.|...--.-|..-|-++...|+
T Consensus 214 D-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 214 D-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred C-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 1 22222222221 1 1233445677777777755433344444444444443
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.85 E-value=6.2e+02 Score=28.30 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=40.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCc---chHHHHHHHHHH--cCCHhHHHHHHHHHHHc
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKVGFTVP---LSYSLYIRALCR--AGELEEALALLDEVKEE 857 (1038)
Q Consensus 801 i~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 857 (1038)
+..+.+.+++..|.++++.+... .+.. ..+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556889999999999999987 3322 234555555543 66789999999988764
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.78 E-value=2.2e+02 Score=27.68 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHH-----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 914 VGRALEIFERMRQEGCEPT--VVT-----YTALIQGFANLGKVAEAWDVFYRMKI 961 (1038)
Q Consensus 914 ~~~A~~~~~~m~~~g~~pd--~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~ 961 (1038)
++.|+.+|+.+.+.--.|+ ... --..+-.|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5667777777765422221 111 12233456677777777777776655
No 407
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.76 E-value=7.2e+02 Score=27.53 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=43.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 001645 870 IHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFF-REKQVGRALEIFERMRQ 926 (1038)
Q Consensus 870 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~-~~g~~~~A~~~~~~m~~ 926 (1038)
+..+.+.|.+..|+++.+-+...+..-|...-..+|+.|+ ++++++--+++++....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5567788999999999888888664446777777777775 66778878888887654
No 408
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.69 E-value=2.3e+02 Score=25.61 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=23.4
Q ss_pred HHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 888 TMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 888 ~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 926 (1038)
.+....+.|+..+...-+.+|.+.+++.-|..+|+-+..
T Consensus 74 ~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 74 NLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333445566666666666666666666666666666554
No 409
>PRK11619 lytic murein transglycosylase; Provisional
Probab=32.01 E-value=1e+03 Score=28.95 Aligned_cols=323 Identities=8% Similarity=-0.040 Sum_probs=155.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001645 193 HATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLV 272 (1038)
Q Consensus 193 ~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 272 (1038)
.+...-.....++...|+-++|......+-..| ...+...+.++..+.+.|...... ++.+|...=...+...-..++
T Consensus 127 ~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~ 204 (644)
T PRK11619 127 KPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLA 204 (644)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 455555677777777888777777777776666 556778888888888777655543 333333210011222222222
Q ss_pred HHHHcCCChhHHHHHHHHHHh---------CCCcCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcC-CCCCh--hhH
Q 001645 273 RSLCNAGKGDIALEFYKEMAQ---------KEMVLDLSLYKIVMNCAA--KLGDVDAVLSIADDMVRIS-QIPER--DAY 338 (1038)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~---------~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~-~~p~~--~~~ 338 (1038)
..+. .+.....+.+..+.+ ..+.|+...-..++-++. ...+.+.|...+....... ..++. .++
T Consensus 205 ~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~ 282 (644)
T PRK11619 205 KQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELR 282 (644)
T ss_pred HhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 2220 000100011111111 112223222222222222 2345577888887764432 22111 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccC
Q 001645 339 GCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKN 418 (1038)
Q Consensus 339 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 418 (1038)
..+.......+..++|...++...... .+.....--+..-...++++.+...+..|.........-.-=+..++...|
T Consensus 283 ~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g 360 (644)
T PRK11619 283 DIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQG 360 (644)
T ss_pred HHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcC
Confidence 334333333322445555555433222 233444445555568888888888888875543333333445666767789
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 419 DLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKG-CELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVF 497 (1038)
Q Consensus 419 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a-~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 497 (1038)
+.++|...|..+... .+ -|..+... +.|..-.. ...... ....+..+ --..-+..+...|....|...+
T Consensus 361 ~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~~~~~~~~~-~~~~~~~~--~~~~ra~~L~~~g~~~~a~~ew 430 (644)
T PRK11619 361 RKAEAEEILRQLMQQ---RG--FYPMVAAQ--RLGEEYPLKIDKAPK-PDSALTQG--PEMARVRELMYWNMDNTARSEW 430 (644)
T ss_pred CHHHHHHHHHHHhcC---CC--cHHHHHHH--HcCCCCCCCCCCCCc-hhhhhccC--hHHHHHHHHHHCCCHHHHHHHH
Confidence 999999888887431 11 22222211 12211000 000000 00000000 1122344556677888888777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 498 KCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNN 534 (1038)
Q Consensus 498 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (1038)
..+... .+......+.....+.|.++.++.....
T Consensus 431 ~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 431 ANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 777664 2444455555555566776666655543
No 410
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.61 E-value=1.9e+02 Score=30.10 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 937 TALIQGFANLGKVAEAWDVFYRMKIK----G-PFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 937 ~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
.-+..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.++.+.+.=+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34566777778888888887777432 2 22344556667777888888888777765553
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.95 E-value=2.5e+02 Score=23.83 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=14.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 001645 973 MFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 973 ~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
.+...+...|++++|++.+++.+
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455566677777777776665
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.93 E-value=2.3e+02 Score=24.94 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 001645 830 SYSLYIRALCRAGELEEALALLDEVKE 856 (1038)
Q Consensus 830 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 856 (1038)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888887766
No 413
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.82 E-value=2.1e+02 Score=25.13 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=9.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 001645 376 LVKGLCIAGRISDALEIVDIM 396 (1038)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~ 396 (1038)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555544443
No 414
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.70 E-value=6.2e+02 Score=26.18 Aligned_cols=265 Identities=13% Similarity=0.157 Sum_probs=145.5
Q ss_pred cCCChhhHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CC--CCChhhHHHHHHHHHhh
Q 001645 699 RGKDFKHMRNLFYEMRRNGYLITP---DTWTIMMMQYGRAGLTEMAMRVFEDMKAN---GC--NPSGSTYKYLIISLSGR 770 (1038)
Q Consensus 699 ~~~~~~~a~~l~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~~~~~ll~~~~~~ 770 (1038)
+...+++|..-|.+..+....-.. .....+|..+.+.|++++.+..|.+|+.. .+ .-+..+.+.++...+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt- 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST- 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh-
Confidence 345678888888877664322222 24455788888999999988888887642 11 2344556666665553
Q ss_pred cCCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------CCcchHHH
Q 001645 771 KGRKVDHAIKIFQEMVNA-----GHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGF------------TVPLSYSL 833 (1038)
Q Consensus 771 ~~~~~~~A~~~~~~m~~~-----~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~~~~ 833 (1038)
..+.+--..+|+.-+++ +-..+-.+-.-+...|...|.+..-.+++.++...-. .....|..
T Consensus 118 -S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 118 -SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred -hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 22444444444432221 1111112223455666777777777777777754322 11246777
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----HhcCCHHHHHHH-HHHHHH---cCCCccHhh---
Q 001645 834 YIRALCRAGELEEALALLDEVKEER-SKLDEFVFGSLIHGL-----VQRGQIEEALAK-VETMKQ---AGIYPTVHV--- 900 (1038)
Q Consensus 834 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~-----~~~g~~~~A~~~-~~~m~~---~g~~p~~~~--- 900 (1038)
-|.+|....+-..-..++++...-. .-|.+.... +|+-| .+.|++++|-.- |+..+. .| .|...+
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLK 274 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLK 274 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHH
Confidence 7889998888888888888776532 234444433 44444 456888888644 444442 45 343332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGC--EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMF 974 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 974 (1038)
|-.|.+.+.+.|- .=|+.-..+.+ .|.....+.|+.+|.+ .++.+-++++..-.. .+-.|+.+-.++
T Consensus 275 YLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~-~IM~DpFIReh~ 343 (440)
T KOG1464|consen 275 YLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS-NIMDDPFIREHI 343 (440)
T ss_pred HHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc-cccccHHHHHHH
Confidence 4445555555441 01111111111 3556778889999865 455555555544332 222354444433
No 415
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=30.41 E-value=7.8e+02 Score=27.24 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=34.0
Q ss_pred chHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 001645 638 YHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEM 713 (1038)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m 713 (1038)
..++..+...-...+|+.+..+|+... -.+.++-.+...+.+.|+.+.|.++++..
T Consensus 11 ~~~q~~F~~~v~~~Dp~~l~~ll~~~P--------------------yHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 11 QEAQEQFYAAVQSHDPNALINLLQKNP--------------------YHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHCC--------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444557777766665543 33455556666777788887777777665
No 416
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.89 E-value=2.6e+02 Score=29.93 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=35.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 001645 908 FFREKQVGRALEIFERMRQEGC-EP--TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKS 984 (1038)
Q Consensus 908 ~~~~g~~~~A~~~~~~m~~~g~-~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 984 (1038)
|.+..++..|...|.+-+...+ .| +.+.|+.-..+-...|++..|+.=-...+...|. ....|.-=..++....++
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCLLELERF 169 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHHHHHHHH
Confidence 4444444444444444443322 11 2334444443444444444444444444444333 333333334444444444
Q ss_pred HHHHHHHHH
Q 001645 985 EEALELLSE 993 (1038)
Q Consensus 985 ~~A~~l~~~ 993 (1038)
.+|.+.+++
T Consensus 170 ~~a~nw~ee 178 (390)
T KOG0551|consen 170 AEAVNWCEE 178 (390)
T ss_pred HHHHHHHhh
Confidence 444444433
No 417
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.87 E-value=5.5e+02 Score=25.31 Aligned_cols=17 Identities=24% Similarity=0.132 Sum_probs=12.3
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001645 945 NLGKVAEAWDVFYRMKI 961 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~ 961 (1038)
+.|+++.|++.++-|..
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45778888887777754
No 418
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.85 E-value=7.4e+02 Score=26.77 Aligned_cols=125 Identities=22% Similarity=0.215 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHH
Q 001645 844 LEEALALLDEVKEERSKLDEFVFGSLIHGL------VQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRA 917 (1038)
Q Consensus 844 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~------~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A 917 (1038)
+++++.++++....+. |..+.....|.++ ...-+|.....+|+-+... .|+.++--.=..+..+.--.+.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHHHHHHhhhHHhH
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 001645 918 LEIFERMRQEGCEPTVVTYTAL-IQGFANLGKVAEAWDVFYRMKIKGPFPDFRTY 971 (1038)
Q Consensus 918 ~~~~~~m~~~g~~pd~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 971 (1038)
+.+.+-+.+.+---+...|..+ ...+.+.|+.++|...|++....-..+-...|
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
No 419
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.84 E-value=8.1e+02 Score=27.25 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CcchHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFT---VPLSYSLYIRALCRAGELEEALALLDEVKE 856 (1038)
Q Consensus 795 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 856 (1038)
..+.-+.+-|..+|+++.|.+.+.....--.. ....|-.+|..-...|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34555666677777777777776664332111 123455555555566666666666655554
No 420
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.05 E-value=3.3e+02 Score=26.54 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=22.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 904 FVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFAN 945 (1038)
Q Consensus 904 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 945 (1038)
.+-.|.+.|.+++|.+++++..+ .|+......-+....+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~ 155 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence 34556677777777777777664 3455444444444333
No 421
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.86 E-value=94 Score=24.41 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001645 192 CHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKA 243 (1038)
Q Consensus 192 ~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~ 243 (1038)
.++...++.++...++-...+++...+++....| ..+..+|.--++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3556677777777777777777888888777777 56777777777766654
No 422
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.64 E-value=4.1e+02 Score=26.90 Aligned_cols=109 Identities=13% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 001645 182 FNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSC-AKNIKTWTI--LVSLYGKAKLIGKALLVFEKMRK 258 (1038)
Q Consensus 182 f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~ 258 (1038)
.+|-.+...+......+|.||--|.-...+.+|-+.|..-..... ..+..+++. -|....+.|++++|++....+..
T Consensus 13 ~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 13 EEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred hhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Q ss_pred CCCCCCHHHHHHHHHH----HHcCCChhHHHHHHHH
Q 001645 259 YGFEPDAVAYKVLVRS----LCNAGKGDIALEFYKE 290 (1038)
Q Consensus 259 ~g~~p~~~~~~~ll~~----~~~~g~~~~A~~~~~~ 290 (1038)
.=+.-|...+-.|... +.+.|..++|+++.+.
T Consensus 93 eiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 93 EILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 423
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.63 E-value=5.1e+02 Score=27.96 Aligned_cols=144 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred cchHHHHHhhc-cCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCH-HHHHHHHHHHhcCCChhhHHHHHHHHH
Q 001645 637 WYHIQESLEKC-AVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSS-ATYNMAIKTAGRGKDFKHMRNLFYEMR 714 (1038)
Q Consensus 637 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~l~~~m~ 714 (1038)
|..+.+.+++. =.|++-.++.-+-..+-..+...++++.-.-..-....++ .....++....+.+|.++|.+.++++.
T Consensus 23 w~~leeLy~eKLW~QLt~~l~~fvd~~~f~~~~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~ 102 (380)
T KOG2908|consen 23 WDRLEELYEEKLWHQLTLALVDFVDDPPFQAGDLLLQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKII 102 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q ss_pred HcCCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCChhhHHHHHHHHHhhcCCChHHHHH
Q 001645 715 RNGYLITP-----DTWTIMMMQYGRAGLTEMAMRVFEDMKA-----NGCNPSGSTYKYLIISLSGRKGRKVDHAIK 780 (1038)
Q Consensus 715 ~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~ 780 (1038)
+.-...+. ..-..+...+...|+..++.+++++..+ .|+.|+..+-.+.+.+-..+.-+++.....
T Consensus 103 ~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 103 EKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHH
No 424
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.62 E-value=7.6e+02 Score=26.54 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHH---------HHhCCCCCC--
Q 001645 307 MNCAAKLGDVDAVLSIADDMVRI-SQIPERDAYGCVLKSFCVSM-----RIREALEFIRN---------LKSKEISMD-- 369 (1038)
Q Consensus 307 i~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g-----~~~~A~~~~~~---------m~~~~~~p~-- 369 (1038)
+.++++.|..+ ...+++-+... ...++...|..++..+.... .-+.....|+. +.+.|..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HHcCC-----HHHHHHHHHHHHHc--C---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 001645 370 RDHFETLVKGL-CIAGR-----ISDALEIVDIMMRR--N---LVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPM 438 (1038)
Q Consensus 370 ~~~~~~li~~~-~~~g~-----~~~A~~~~~~~~~~--~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 438 (1038)
......+++.. ....- .+.|.+.|+..... . ..+......+.....+.|+.+.-..+++..... .+
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---ST
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CC
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 001645 439 ASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGH-VRQDNLSEAWKVFKC 499 (1038)
Q Consensus 439 ~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~ 499 (1038)
..-...++.+++...+.+...++++.....+..++...+..+.... ...-..+.+++.+..
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 425
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.58 E-value=28 Score=36.99 Aligned_cols=118 Identities=15% Similarity=0.068 Sum_probs=86.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 001645 874 VQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTV-VTYTALIQGFANLGKVAEA 952 (1038)
Q Consensus 874 ~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A 952 (1038)
...|.+++|++.|...++.+ ++....|.-=..++.+.+....|+.=+....+. .||. ..|-.=..+..-.|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 45688999999999888765 667777777778888889888888888877763 5653 3455555566678999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 953 WDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 953 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.+.++...+.+..+....| +-...-+++..++-...+++-.+
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 9999999988776554443 44555666666666666666554
No 426
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=28.42 E-value=3.2e+02 Score=24.75 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 001645 355 LEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRN 400 (1038)
Q Consensus 355 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 400 (1038)
.+-+..+..-++.|++.....-++++-+.+|+..|.++|+-++.+-
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3444455555667777777777777777777777777777766543
No 427
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.38 E-value=1e+03 Score=27.88 Aligned_cols=57 Identities=21% Similarity=0.056 Sum_probs=31.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHc
Q 001645 343 KSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLC-IAGRISDALEIVDIMMRR 399 (1038)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~ 399 (1038)
..+.+.|-+..|++.-+-+.+....-|+...-.+|+.|+ +..++....++++.....
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 334455666666666665555555445555555555553 344555555555555433
No 428
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.36 E-value=5.9e+02 Score=25.14 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=14.2
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 001645 909 FREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 909 ~~~g~~~~A~~~~~~m~~ 926 (1038)
.+.|+++.|.++++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 357888999888888865
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.34 E-value=1.9e+02 Score=22.35 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 864 FVFGSLIHGLVQRGQIEEALAKVETMK 890 (1038)
Q Consensus 864 ~t~~~li~~~~~~g~~~~A~~~~~~m~ 890 (1038)
...-.+|.+|...|++++|.++..++.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333344455555555555555444443
No 430
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.17 E-value=1.7e+02 Score=21.22 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=21.6
Q ss_pred HHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 001645 275 LCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMN 308 (1038)
Q Consensus 275 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 308 (1038)
..+.|-..++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666667777777777776666666655543
No 431
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.93 E-value=1.1e+03 Score=28.10 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHhcCCChhhHHHHHHH
Q 001645 684 SHSSATYNMAIKTAGRGKDFKHMRNLFYE 712 (1038)
Q Consensus 684 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~ 712 (1038)
.+++.-|+ .+..+.-.|.++.|..+++.
T Consensus 146 ~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 146 EHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp SGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred ccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 33455565 56677777888888887743
No 432
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=26.52 E-value=4.4e+02 Score=24.36 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 774 KVDHAIKIFQEMVN-AGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVG 824 (1038)
Q Consensus 774 ~~~~A~~~~~~m~~-~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 824 (1038)
++.+.+.+++.+.+ ....-+....--|.-++.+.++++.+++..+.+.+..
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 55566666666665 2222223333334444555555555555555554443
No 433
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.31 E-value=7.9e+02 Score=25.96 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=57.0
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHh----c
Q 001645 843 ELEEALALLDEVKEERSKLDEFVFGSLIHGLVQR-------GQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFR----E 911 (1038)
Q Consensus 843 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-------g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~----~ 911 (1038)
+..+|...|++..+.|..+...+...+...|..- -+...|...+.++-..+ +......|...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5566666666666665444311222222222221 12235666666666554 23333333333322 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCC
Q 001645 912 KQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG---------------KVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 912 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~~~~ 965 (1038)
.+.++|...|.+.-+.|- ......+. .+...| +...|..++......+..
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 366777777777777653 22222222 333333 566666666666665554
No 434
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.96 E-value=1.3e+02 Score=31.83 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 001645 269 KVLVRSLCNAGKGDIALEFYKEMAQKEM 296 (1038)
Q Consensus 269 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 296 (1038)
|..|....+.||.++|+.+++|.++.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444444444444443
No 435
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.75 E-value=8e+02 Score=25.83 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=55.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQ----EGCEPTVVTYT-ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFR-TY 971 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~----~g~~pd~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~ 971 (1038)
..++..+...|++.++.+.+.+...+..+ .|.+-|+.... .|...|....-+++-++..+.|.++|...+.. -|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45566677777777777777766665543 35555553322 23344444445677777777777776543321 12
Q ss_pred HHHHHH-HHhcCChHHHHHHHHHHH
Q 001645 972 SMFIGC-LCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 972 ~~l~~~-~~~~g~~~~A~~l~~~m~ 995 (1038)
-..-.. +....++.+|-.++.+..
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 222111 223445777777776665
No 436
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.66 E-value=8.6e+02 Score=26.18 Aligned_cols=103 Identities=8% Similarity=-0.017 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH
Q 001645 435 YLPMASTYTELMQHLFKLNEYKKGCELYNEMLKR-GIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMED----KGIRPTR 509 (1038)
Q Consensus 435 ~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~ 509 (1038)
+..|...++.+... +..+.++..+..++..+. |-.--...+-.....||+.||.+.|.+.+++..+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44555555544432 222333444444444333 2111223455566778888888888877765543 4656565
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHhCC
Q 001645 510 KSYSVFIKELCR-VSRTNEILKVLNNMQASK 539 (1038)
Q Consensus 510 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~ 539 (1038)
..+.+-+.-+.. ..-..+-++..+.+.+.|
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 555443332222 222344444444454443
No 437
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.57 E-value=3.4e+02 Score=25.39 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=39.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcC
Q 001645 252 VFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLG 314 (1038)
Q Consensus 252 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 314 (1038)
+...+.+.|++++.. -..++..+...++.-.|.++|+++.+.+...+..|----++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 445556677665543 34577777777777888888888888776665555444444544444
No 438
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.50 E-value=7.5e+02 Score=25.41 Aligned_cols=58 Identities=9% Similarity=-0.087 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 001645 373 FETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERM 430 (1038)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (1038)
|+.-+..+.+..+++.+..--.+..+..+........+.........+++|+..+.+.
T Consensus 47 ~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 47 YTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3444444555555555554444444443333333444444445555555555555444
No 439
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=25.21 E-value=1.8e+02 Score=34.76 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001645 269 KVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDM 326 (1038)
Q Consensus 269 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 326 (1038)
.-++..|.+.|-.+.|.++++.+-.+-. ...-|..-+..+.++|+...+..+.+.+
T Consensus 409 ~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 409 EKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444444332211 1123333444444444444444443333
No 440
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.08 E-value=6.7e+02 Score=24.71 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=16.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 001645 444 ELMQHLFKLNEYKKGCELYNEMLKR 468 (1038)
Q Consensus 444 ~ll~~~~~~~~~~~a~~l~~~m~~~ 468 (1038)
+++-.|-+..++.++.++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777776654
No 441
>PRK10941 hypothetical protein; Provisional
Probab=24.88 E-value=6.8e+02 Score=26.37 Aligned_cols=60 Identities=18% Similarity=0.055 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 001645 798 ETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEE 857 (1038)
Q Consensus 798 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 857 (1038)
+.+-.+|.+.++++.|..+.+.+....|.++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344556667777777777777777777766666666666677777777777666666543
No 442
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.75 E-value=3.2e+02 Score=24.00 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 001645 868 SLIHGLVQRGQIEEALAKVETM 889 (1038)
Q Consensus 868 ~li~~~~~~g~~~~A~~~~~~m 889 (1038)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555555666555555544
No 443
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.72 E-value=3.2e+02 Score=25.61 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=31.4
Q ss_pred HHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 820 LRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRG 877 (1038)
Q Consensus 820 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 877 (1038)
+.+.|...+..-..++..+...++.-.|.++++++.+.+...+..|--..++.+...|
T Consensus 12 lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 12 LKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444444445566666666666667777777776655555554333344444443
No 444
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.63 E-value=4.2e+02 Score=28.33 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=29.7
Q ss_pred HhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001645 697 AGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKA 750 (1038)
Q Consensus 697 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 750 (1038)
..+..+.......+..+. ....-...+..+...|++..|++++.+..+
T Consensus 108 ~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 108 QRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333444444444444443 333445567777888999999988887765
No 445
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.27 E-value=4.9e+02 Score=22.81 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=9.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 001645 376 LVKGLCIAGRISDALEIVDIM 396 (1038)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~ 396 (1038)
++..|...+++++|.+-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 334444444444444444444
No 446
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.70 E-value=1.7e+03 Score=28.77 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001645 302 LYKIVMNCAAKLGDVDAVLSIADDMVRISQI--PERD-AYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVK 378 (1038)
Q Consensus 302 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 378 (1038)
-|--++..+-+.+-.+.+.++....++.-.. |... +++++.+.....|.+.+|.+.+-.-.... .-......++-
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdse--rrrdcLRqlvi 1062 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSE--RRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHH--HHHHHHHHHHH
Confidence 3556667777777778877777766664211 2222 36777777777777777766543321111 01223455666
Q ss_pred HHHHcCCHH
Q 001645 379 GLCIAGRIS 387 (1038)
Q Consensus 379 ~~~~~g~~~ 387 (1038)
.++.+|.++
T Consensus 1063 vLfecg~l~ 1071 (1480)
T KOG4521|consen 1063 VLFECGELE 1071 (1480)
T ss_pred HHHhccchH
Confidence 667777654
No 447
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.69 E-value=8.4e+02 Score=28.20 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=54.9
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 187 LREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAV 266 (1038)
Q Consensus 187 ~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 266 (1038)
...|...+......++. ...|+...|+.+++.+...+ ....++..+.. +. | -.+..
T Consensus 194 ~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~-----------------~l--g-~~~~~ 249 (484)
T PRK14956 194 KIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRK-----------------MI--G-YHGIE 249 (484)
T ss_pred HHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHH-----------------Hh--C-CCCHH
Confidence 34566667776655543 34588888888888765321 11122222211 11 3 23555
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHH
Q 001645 267 AYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSL 302 (1038)
Q Consensus 267 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 302 (1038)
.+..++.++...+....|+.++.+|.+.|..|...+
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 666677766665556788888999988887765443
No 448
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.10 E-value=8.3e+02 Score=25.09 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=19.5
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001645 771 KGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCL 804 (1038)
Q Consensus 771 ~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~ 804 (1038)
+.+++++....++++...+...+..-.+.+..+|
T Consensus 13 q~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 13 QAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3456777777777777766666665555555554
No 449
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.85 E-value=4.7e+02 Score=30.78 Aligned_cols=90 Identities=8% Similarity=0.111 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHcCCCChhhHHHHH
Q 001645 340 CVLKSFCVSMRIREALEFIRNLKSK--EISMDRDHFETLVKGLCIAGRIS------DALEIVDIMMRRNLVDGKIYGIII 411 (1038)
Q Consensus 340 ~ll~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~li 411 (1038)
+++.+|..+|++..+.++++.+... |-+.=...||..|+...+.|.++ .|.++++... --.+..+|..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR--LNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--cCCcchHHHHHH
Confidence 6778888888888888888877653 33333456777777777777653 2333333322 011455677666
Q ss_pred HHHhccCCHHHHHHHHHHHH
Q 001645 412 GGYLRKNDLSKALVQFERMK 431 (1038)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~m~ 431 (1038)
.+-..--...-.+-++.++.
T Consensus 111 ~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 111 QASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HhhcChHhHHhccHHHHHHH
Confidence 66554333333333333333
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=21.97 E-value=1.6e+02 Score=31.20 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 001645 831 YSLYIRALCRAGELEEALALLDEVKEERSKLDEFVF 866 (1038)
Q Consensus 831 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 866 (1038)
|+.-|..-.+.||+++|+.++++..+.|..--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 556666666666666666666666666655444443
No 451
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=21.94 E-value=98 Score=28.25 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=19.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHH
Q 001645 978 LCKVGKSEEALELLSEMTESGIVPSNINFRTIFF 1011 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 1011 (1038)
+.+.|.-.+|..+|++|++.|-.||. |..|+.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 44455556677777777777766653 444443
No 452
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.07 E-value=1e+03 Score=27.38 Aligned_cols=265 Identities=11% Similarity=0.022 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHH-----HHhhcCCChH
Q 001645 706 MRNLFYEMRRNGYLITPDTW--TIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYK--YLIIS-----LSGRKGRKVD 776 (1038)
Q Consensus 706 a~~l~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~-----~~~~~~~~~~ 776 (1038)
...+++.+...+-..+...+ .+.+...++.|..+ +++.+.+.|..|+..... ..+.. .+ ..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~--~~~~-- 85 (480)
T PHA03100 14 KVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYN--LTDV-- 85 (480)
T ss_pred HHHHHHHHHhcCccchhhhcccchhhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHH--hhch--
Confidence 34455555554433333222 23444455566654 455556677776643221 12222 12 1223
Q ss_pred HHHHHHHHHHHCCCCCCHHH--HHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCC----cchHHHHHHHHHHcCCHhHHH
Q 001645 777 HAIKIFQEMVNAGHIPDKEL--VETYLDCLC--EVGMLQLAKSCMDVLRKVGFTV----PLSYSLYIRALCRAGELEEAL 848 (1038)
Q Consensus 777 ~A~~~~~~m~~~~~~~d~~~--~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~ 848 (1038)
.++.+.+.+.|..++..- -.+.+...+ ..|+.+-+..++ +.|... ...+ +.+...+..|. .-.
T Consensus 86 --~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll----~~g~~~~~~~~~g~-t~L~~A~~~~~--~~~ 156 (480)
T PHA03100 86 --KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL----DNGANVNIKNSDGE-NLLHLYLESNK--IDL 156 (480)
T ss_pred --HHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHH----HcCCCCCccCCCCC-cHHHHHHHcCC--ChH
Confidence 345556666776543211 022333344 666665544444 444432 2223 34455555662 123
Q ss_pred HHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhH--------HHHHHHHHhcCCHHHHH
Q 001645 849 ALLDEVKEERSKLDEFVF--GSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVY--------TSFVVHFFREKQVGRAL 918 (1038)
Q Consensus 849 ~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y--------~~li~~~~~~g~~~~A~ 918 (1038)
++++.+.+.|..++.... .+.+...+..|+.+ +++.+.+.|..++.... .+.+...+..|. ...
T Consensus 157 ~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~ 230 (480)
T PHA03100 157 KILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITL 230 (480)
T ss_pred HHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcH
Confidence 455556677776654432 34556666777655 34444556655553211 333444445555 123
Q ss_pred HHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChHHHHHHHH
Q 001645 919 EIFERMRQEGCEPTV---VTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRT---YSMFIGCLCKVGKSEEALELLS 992 (1038)
Q Consensus 919 ~~~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~l~~ 992 (1038)
++.+.+.+.|..++. .-.+.|..| +..|+.+ +++.+.+.|..++... ... +......|+. ++++
T Consensus 231 ~iv~~Ll~~g~din~~d~~g~TpL~~A-~~~~~~~----iv~~Ll~~gad~n~~d~~g~tp-l~~A~~~~~~----~iv~ 300 (480)
T PHA03100 231 EVVNYLLSYGVPINIKDVYGFTPLHYA-VYNNNPE----FVKYLLDLGANPNLVNKYGDTP-LHIAILNNNK----EIFK 300 (480)
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCccCCCCCcH-HHHHHHhCCH----HHHH
Confidence 455556666665543 223334333 3556643 4455556665444321 112 2223345554 4566
Q ss_pred HHHHCCCCCCh
Q 001645 993 EMTESGIVPSN 1003 (1038)
Q Consensus 993 ~m~~~g~~p~~ 1003 (1038)
.+.+.|...+.
T Consensus 301 ~Ll~~g~~i~~ 311 (480)
T PHA03100 301 LLLNNGPSIKT 311 (480)
T ss_pred HHHhcCCCHHH
Confidence 66777765443
No 453
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=1.2e+03 Score=25.97 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 001645 341 VLKSFCVSMRIREALEFIRNL 361 (1038)
Q Consensus 341 ll~~~~~~g~~~~A~~~~~~m 361 (1038)
+...+-..|++.+|..++.+.
T Consensus 137 L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 445566677777777776654
No 454
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.55 E-value=1.3e+03 Score=26.72 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001645 932 TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPD 967 (1038)
Q Consensus 932 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 967 (1038)
+...+..++.+....+....|+.+++++.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 444445555555544455677777777777665543
No 455
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=20.50 E-value=8.5e+02 Score=24.89 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=22.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcchHH
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYS 832 (1038)
Q Consensus 801 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 832 (1038)
+--+..+|+++.|.++.+-+.+.|...|..|+
T Consensus 90 mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~ 121 (230)
T PHA02537 90 MVWRFDIGDFDGALEIAEYALEHGLTMPDQFR 121 (230)
T ss_pred eeeeeeccCHHHHHHHHHHHHHcCCCCCcccc
Confidence 33455678888888888888888776665443
No 456
>PRK09857 putative transposase; Provisional
Probab=20.26 E-value=5e+02 Score=27.74 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001645 945 NLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS 1002 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 1002 (1038)
+.|+.++-.++++.+.+..+. .....-+++.-+...|.-++++++.++|...|+.++
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~-~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAERSPK-HKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hccccchHHHHHHHHHHhCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444444444444333221 222233444445555555566666666666666554
No 457
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=20.05 E-value=1.2e+03 Score=25.59 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001645 235 ILVSLYGKAKLIGKALLVFEKMRKYGFEP 263 (1038)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p 263 (1038)
.++.+.. .|+..+|+.++..+.+.|..|
T Consensus 249 ~l~~ai~-~~~~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 249 ELLEAIL-NKDTAEALKILDEILESGVDP 276 (355)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 3444444 377788888888887766544
Done!