Query 001645
Match_columns 1038
No_of_seqs 621 out of 4153
Neff 10.3
Searched_HMMs 29240
Date Wed Mar 27 00:56:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m3/001645.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H3_3-3//hhsearch_pdb/001645hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 312.3 44.9 199 795-996 374-578 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 307.0 42.6 524 208-979 66-595 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 228.4 24.0 134 421-554 87-220 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 222.4 24.4 88 433-520 134-221 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 197.0 48.5 181 798-982 207-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 195.9 48.4 284 721-1014 100-384 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 183.2 43.2 259 700-965 202-481 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 181.3 46.0 280 722-1010 186-489 (514)
9 3fp2_A TPR repeat-containing p 1.0 1 1 175.5 38.3 256 702-965 217-494 (537)
10 3fp2_A TPR repeat-containing p 1.0 1 1 167.0 42.4 254 735-997 215-491 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=312.28 Aligned_cols=199 Identities=12% Similarity=0.005 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999529978999999999973998741289999999982997699999999998089999998999999999
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLV 874 (1038)
Q Consensus 795 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 874 (1038)
..+..++.+|.+.|++++|.+.|+.+.+..+.+..+|+.++..|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 9999999999983569999999999987297778999999999997577799999999999868-134389999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHCCC
Q ss_conf 35999999999999988599762745999999999509998999999999884----99977--7779999999994399
Q 001645 875 QRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQE----GCEPT--VVTYTALIQGFANLGK 948 (1038)
Q Consensus 875 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd--~~~~~~l~~~~~~~g~ 948 (1038)
+.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|+
T Consensus 453 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8579999999999999848-887679999999999818999999999999985323454535499999999999998047
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 899999999989849999999999999999943996999999999998
Q 001645 949 VAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 949 ~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+++|++.++++.+.++. +..+|..++.+|...|++++|.+.++++.+
T Consensus 532 ~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999999973899-738999999999981789999999999972
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=306.96 Aligned_cols=524 Identities=11% Similarity=0.020 Sum_probs=324.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 39947999999999974989999999999999991199879999999998689997899899999999907992479999
Q 001645 208 AKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEF 287 (1038)
Q Consensus 208 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 287 (1038)
.+.+..+...+..+. .++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 676678877546633----789999999999998745834799999999960--89935799999999974769999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99997479867998799999999811995699999999987598889100999999999409999999999999849998
Q 001645 288 YKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEIS 367 (1038)
Q Consensus 288 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 367 (1038)
|+.+.. ..++..+++.++.+|.+.|++++|.++|+++. |+... ..++...+ -...+..
T Consensus 140 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~----~~~~~~~~-----------~~~~~~~ 197 (597)
T 2xpi_A 140 LTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRKD----EKNANKLL-----------MQDGGIK 197 (597)
T ss_dssp HHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC-------------------------CCCSSCC
T ss_pred HHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCC----CCCCCCCC-----------CCCCCCC
T ss_conf 998733--54565089999999998866999999984248-----86322----32343343-----------2112351
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 89877999999999809999999999999884998825499999998605998799999999988899999999999999
Q 001645 368 MDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQ 447 (1038)
Q Consensus 368 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 447 (1038)
.+..++..++.+|.+.|++++|.+.|+++.+.++.+...+..+...+...+..+.+.. ..+ +
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~--~~l---~------------- 259 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV--LKL---N------------- 259 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHH--HHS---C-------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH--HHC---C-------------
T ss_conf 2589999988999983998999999999997293256999999985034615678999--865---7-------------
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99950996499999999998999989889999999988169999999999998858999998889999999996499789
Q 001645 448 HLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNE 527 (1038)
Q Consensus 448 ~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (1038)
+..+...+..+...+|+.++..|.+.|++++|..+|+++... .++..+|+.++..|.+.|++++
T Consensus 260 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 260 --------------YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp --------------THHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred --------------CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCHHH
T ss_conf --------------742344308899999999999980731399999999876438--8309999999999998468999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998868987797749999999993298689999998840205899877544566667899985455342210000
Q 001645 528 ILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTT 607 (1038)
Q Consensus 528 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (1038)
|..+|+++...+..
T Consensus 324 A~~~~~~~~~~~~~------------------------------------------------------------------ 337 (597)
T 2xpi_A 324 VLAITTKILEIDPY------------------------------------------------------------------ 337 (597)
T ss_dssp HHHHHHHHHHHCTT------------------------------------------------------------------
T ss_pred HHHHHHHHHHCCCC------------------------------------------------------------------
T ss_conf 99999999972955------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 01235899998793669999988128986201899874203889999999999704445246989988611189987899
Q 001645 608 VSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSS 687 (1038)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1038)
+.
T Consensus 338 ------------------------------------------------------------------------------~~ 339 (597)
T 2xpi_A 338 ------------------------------------------------------------------------------NL 339 (597)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------CH
T ss_conf ------------------------------------------------------------------------------37
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999995599935699999999986988799999999999997399589999999998769888854499999999
Q 001645 688 ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISL 767 (1038)
Q Consensus 688 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 767 (1038)
.++..++..+...+++++|..+|+.+....+. +..+|+.++..|.+.|++++|..+|+++.+.
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------- 402 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTM---------------- 402 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------------
T ss_conf 99999999999827777999999999851835-4799999999999835699999999999872----------------
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 82049995899999999997899999999999999999529978999999999973998741289999999982997699
Q 001645 768 SGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEA 847 (1038)
Q Consensus 768 ~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 847 (1038)
. ..+...+..++.+|.+.|++++|.+.++.+.+..+.+...|..++.+|.+.|++++|
T Consensus 403 ---------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 403 ---------------------D-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp ---------------------C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred ---------------------C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf ---------------------9-777899999999999757779999999999986813438999999999985799999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999998089999998999999999359999999999999885----99762--745999999999509998999999
Q 001645 848 LALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQA----GIYPT--VHVYTSFVVHFFREKQVGRALEIF 921 (1038)
Q Consensus 848 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 921 (1038)
.++|+++.+.. +.+..+|..++..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.+
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999999848-88767999999999981899999999999998532345453549999999999999804799999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 9998849997777799999999943998999999999898499999999999999999
Q 001645 922 ERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLC 979 (1038)
Q Consensus 922 ~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~ 979 (1038)
+++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+..|. +...+..+..+|.
T Consensus 540 ~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 540 NQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH
T ss_conf 9999738-997389999999999817899999999999720888-7489999999874
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=228.42 Aligned_cols=134 Identities=16% Similarity=0.258 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 79999999998889999999999999999950996499999999998999989889999999988169999999999998
Q 001645 421 SKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCM 500 (1038)
Q Consensus 421 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (1038)
+.|.++|++|...|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999808999899999999999846977889999999997289886111048999999888999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 858999998889999999996499789999999988689877977499999999
Q 001645 501 EDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCM 554 (1038)
Q Consensus 501 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 554 (1038)
.+.|+.||..+|+.||.+|++.|+.++|.+++++|.+.+..|+..||..++..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 862999999999999999853898999999999999948996999999999998
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=222.45 Aligned_cols=88 Identities=13% Similarity=0.246 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 89999999999999999950996499999999998999989889999999988169999999999998858999998889
Q 001645 433 SGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSY 512 (1038)
Q Consensus 433 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 512 (1038)
.|+.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.|+.+|++.|+.++|.++|++|.+.|..|+..||
T Consensus 134 ~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 134 FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred CCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 28988611104899999988899999999999986299999999999999985389899999999999994899699999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 001645 513 SVFIKELC 520 (1038)
Q Consensus 513 ~~li~~~~ 520 (1038)
+.++..|+
T Consensus 214 ~~l~~~F~ 221 (501)
T 4g26_A 214 DMIEEWFK 221 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999983
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=196.95 Aligned_cols=181 Identities=12% Similarity=0.040 Sum_probs=89.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999529978999999999973998741289999999982997699999999998089999998999999999359
Q 001645 798 ETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRG 877 (1038)
Q Consensus 798 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 877 (1038)
..+..++...|++++|...+....+..|.++..+..++..+...|++++|++.++++.+.. +.+...|..+..++.+.|
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
T ss_conf 9999999985789999999999985296878999999999998688999999999998649-998899999999999869
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999999988599762745999999999509998999999999884999777779999999994399899999999
Q 001645 878 QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFY 957 (1038)
Q Consensus 878 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~ 957 (1038)
++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..++..+.+.|++++|+..++
T Consensus 286 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9799999999998649-4449999999999998489999999999998609-8739999779999998688899999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9898499999999999999999439
Q 001645 958 RMKIKGPFPDFRTYSMFIGCLCKVG 982 (1038)
Q Consensus 958 ~~~~~~~~~d~~~~~~l~~~~~~~g 982 (1038)
++.+..|. +...|..+..++...|
T Consensus 364 ~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 364 EAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHCC
T ss_conf 99861999-7899985999998745
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=195.86 Aligned_cols=284 Identities=15% Similarity=0.058 Sum_probs=188.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999999999997399589999999998769888854499999999820499958999999999978999999999999
Q 001645 721 TPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETY 800 (1038)
Q Consensus 721 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~l 800 (1038)
+...|..+...+.+.|++++|...|.++.+. .|+.......+..+.. ..+++++|...+.++....+ .+...+..+
T Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 175 (388)
T 1w3b_A 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLK-ALGRLEEAKACYLKAIETQP-NFAVAWSNL 175 (388)
T ss_dssp CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_conf 3999999999999858999999999999975--9896899999999999-84689999999999987298-978999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999529978999999999973998741289999999982997699999999998089999998999999999359999
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIE 880 (1038)
Q Consensus 801 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 880 (1038)
..++...|++++|...++.+.+.++.....+..+...+...|++++|+..+++..... +.+..++..+..++...|+++
T Consensus 176 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 254 (388)
T 1w3b_A 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
T ss_conf 9999985999999999999985598867999999999998578999999999998529-687899999999999868899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999988599762745999999999509998999999999884999777779999999994399899999999989
Q 001645 881 EALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMK 960 (1038)
Q Consensus 881 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 960 (1038)
+|...|+++.+.+ +.+...|..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 255 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 255 LAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998649-9988999999999998699799999999998649-4449999999999998489999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHCHHHHHHHHH
Q ss_conf 849999999999999999943996999999999998999889-202999999970
Q 001645 961 IKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS-NINFRTIFFGLN 1014 (1038)
Q Consensus 961 ~~~~~~d~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~ 1014 (1038)
+..|. +..++..++.+|.+.|++++|...++++.+ +.|+ ...+..+-..+.
T Consensus 333 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 333 EVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLK 384 (388)
T ss_dssp TSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred HCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf 60987-399997799999986888999999999986--19997899985999998
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=183.16 Aligned_cols=259 Identities=10% Similarity=0.014 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHHH-----C--CC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9993569999999998-----6--98------879999999999999739958999999999876988885449999999
Q 001645 700 GKDFKHMRNLFYEMRR-----N--GY------LITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIIS 766 (1038)
Q Consensus 700 ~~~~~~a~~~~~~m~~-----~--~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 766 (1038)
.++++.|...|+.+.. . .+ +.+...+..+...+...|++++|...|+.+.+.. |+...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_conf 322999999999999886654223810011482789999999999998789999999999998638--648999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 98204999589999999999789999999999999999952997899999999997399874128999999998299769
Q 001645 767 LSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEE 846 (1038)
Q Consensus 767 ~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 846 (1038)
+. ..+++++|...+..+..... .+...+..+..++...|++++|...+..+.+..+.++..+..++..+...|++++
T Consensus 280 ~~--~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 280 MA--DRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HH--TSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHH
T ss_pred HH--HCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99--88889999999999861386-7789999999999980779999999999987385028999999999998689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHH---CCCHHHHH
Q ss_conf 999999999808999999899999999935999999999999988599-762----7459999999995---09998999
Q 001645 847 ALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI-YPT----VHVYTSFVVHFFR---EKQVGRAL 918 (1038)
Q Consensus 847 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~ 918 (1038)
|+..++++.+.. +.+...+..+...+...|++++|...++.+.+... .++ ...+..+...+.. .|++++|.
T Consensus 357 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 357 CETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999875-4677899999999987889999999999999761233217899999999999986633258889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999988499977777999999999439989999999998984999
Q 001645 919 EIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 919 ~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 965 (1038)
..++++.+.. +.+...+..+...|.+.|++++|...++++.+..+.
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 9999998758-555899999999999825799999999999876614
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=181.34 Aligned_cols=280 Identities=10% Similarity=-0.048 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----CCCCCCH--------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999999997---3995899999999987-----6988885--------4499999999820499958999999999
Q 001645 722 PDTWTIMMMQYGR---AGLTEMAMRVFEDMKA-----NGCNPSG--------STYKYLIISLSGRKGRKVDHAIKIFQEM 785 (1038)
Q Consensus 722 ~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p~~--------~~~~~ll~~~~~~~~~~~~~A~~~~~~m 785 (1038)
...+......+.. .|++++|...|+++.+ ..-.|+. ..+..+...+. ..+++++|...+..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~ 263 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF--LKNDPLGAHEDIKKA 263 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH--HSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_conf 889999899998762332299999999999988665422381001148278999999999999--878999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 97899999999999999999529978999999999973998741289999999982997699999999998089999998
Q 001645 786 VNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFV 865 (1038)
Q Consensus 786 ~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 865 (1038)
...... ...+..+..++...|++++|...++.+.+..+.++..+..+...+...|++++|+..++++.+.. +.+...
T Consensus 264 l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 340 (514)
T 2gw1_A 264 IELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFP 340 (514)
T ss_dssp HHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHH
T ss_pred HHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-HHHHHH
T ss_conf 863864--89999999999988889999999999861386778999999999998077999999999998738-502899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q ss_conf 9999999993599999999999998859976274599999999950999899999999988499-977----77799999
Q 001645 866 FGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC-EPT----VVTYTALI 940 (1038)
Q Consensus 866 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~l~ 940 (1038)
+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .++ ...+..+.
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999998689999999999999875-467789999999998788999999999999976123321789999999999
Q ss_pred HHHHH---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHCHHHHH
Q ss_conf 99994---39989999999998984999999999999999994399699999999999899988920299999
Q 001645 941 QGFAN---LGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIF 1010 (1038)
Q Consensus 941 ~~~~~---~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~ 1010 (1038)
..+.. .|++++|...++++....+. +..++..++.+|...|++++|...+++..+ +.|+.......+
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~ 489 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQAI 489 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_conf 9986633258889999999999875855-589999999999982579999999999987--661468899999
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=175.50 Aligned_cols=256 Identities=13% Similarity=0.095 Sum_probs=150.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9356999999999869887999-------999999999973995899999999987698888544999999998204999
Q 001645 702 DFKHMRNLFYEMRRNGYLITPD-------TWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRK 774 (1038)
Q Consensus 702 ~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 774 (1038)
+++.|..+|+.+.+..+. +.. .+..+...+...|++++|...|+.+... .|+...+..+...+. ..++
T Consensus 217 ~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~--~~~~ 291 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA--DKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC--CSSC
T ss_pred HHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHH--HHCC
T ss_conf 999999999999987877-40445999999999999987545578999999999866--987469999999999--8037
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 58999999999978999999999999999995299789999999999739987412899999999829976999999999
Q 001645 775 VDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEV 854 (1038)
Q Consensus 775 ~~~A~~~~~~m~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 854 (1038)
+++|...+..+..... .+..++..+..++...|++++|...++.+.+..+..+..+..+...+...|++++|...++++
T Consensus 292 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999754599-987999999999986689999999999999859997799999999999847799999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHC----------CCHHHHHH
Q ss_conf 980899999989999999993599999999999998859-----976274599999999950----------99989999
Q 001645 855 KEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAG-----IYPTVHVYTSFVVHFFRE----------KQVGRALE 919 (1038)
Q Consensus 855 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~----------g~~~~A~~ 919 (1038)
.+.. +.+...+..+...+...|++++|...++.+.+.. .......+......+... |++++|..
T Consensus 371 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 371 KLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8739-998599999999998837889999999999870976244688899999889999997640100224757999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999988499977777999999999439989999999998984999
Q 001645 920 IFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 920 ~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 965 (1038)
.++++.+.. +.+...+..+...|...|++++|...++++.+..+.
T Consensus 450 ~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 450 LLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 999999749-997899999999999851499999999999986899
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=166.97 Aligned_cols=254 Identities=13% Similarity=0.039 Sum_probs=182.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 3995899999999987698888544--------99999999820499958999999999978999999999999999995
Q 001645 735 AGLTEMAMRVFEDMKANGCNPSGST--------YKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCE 806 (1038)
Q Consensus 735 ~g~~~~A~~~~~~m~~~g~~p~~~~--------~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~l~~~~~~ 806 (1038)
.+++++|..+|+++.+. .|+... +..+-..+ ...+++++|...+....... |+...+..+..++..
T Consensus 215 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~--~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH--FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHH
T ss_conf 87999999999999987--8774044599999999999998--75455789999999998669--874699999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 29978999999999973998741289999999982997699999999998089999998999999999359999999999
Q 001645 807 VGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKV 886 (1038)
Q Consensus 807 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 886 (1038)
.|++++|...+..+.+..+..+..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...+
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 0379999999999754599987999999999986689999999999999859-997799999999999847799999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHC----------CCHHH
Q ss_conf 999885997627459999999995099989999999998849-----997777799999999943----------99899
Q 001645 887 ETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEG-----CEPTVVTYTALIQGFANL----------GKVAE 951 (1038)
Q Consensus 887 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~pd~~~~~~l~~~~~~~----------g~~~~ 951 (1038)
+.+.+.. +.+...+..+...+...|++++|...++++.+.. .......+..+...+... |++++
T Consensus 368 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 368 NETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9998739-998599999999998837889999999999870976244688899999889999997640100224757999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999999898499999999999999999439969999999999989
Q 001645 952 AWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 952 A~~~~~~~~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
|...++++.+..|. +..++..++.+|...|++++|.+.+++..+.
T Consensus 447 A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 447 AIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999999974999-7899999999999851499999999999986
Done!