BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001646
         (1038 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DK7|A Chain A, Solution Structure Of Ww Domain In Transcription
           Elongation Regulator 1
          Length = 73

 Score = 33.9 bits (76), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 303 IPGSP-AKAWEADTNMDLYNDTVRVKMGFKPDDLV 336
           IPG+P    W  D  +  YN T R+ M  +PDDL+
Sbjct: 17  IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLI 51


>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
           Group Iii Metabotropic Glutamate Receptor
          Length = 501

 Score = 32.7 bits (73), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 17/117 (14%)

Query: 716 LLNNPYYRDIL-----GEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSR-IAENA 769
           LL+ P  R ++      +     A A R D++    W+G  SW +  N +     IAE A
Sbjct: 242 LLDTPNSRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGA 301

Query: 770 LVDAIQARR---HGDALYFWVR-MDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLK 822
           +   IQ +R    G   YF  R ++ + RN    ++W         NCK+T S S K
Sbjct: 302 IT--IQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWE-----ENFNCKLTISGSKK 351


>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
           Ly3414 Antagonist
          Length = 481

 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 17/117 (14%)

Query: 716 LLNNPYYRDIL-----GEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSR-IAENA 769
           LL+ P  R ++      +     A A R D++    W+G  SW +  N +     IAE A
Sbjct: 242 LLDTPNSRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGA 301

Query: 770 LVDAIQARR---HGDALYFWVR-MDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLK 822
           +   IQ +R    G   YF  R ++ + RN    ++W         NCK+T S S K
Sbjct: 302 IT--IQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWE-----ENFNCKLTISGSKK 351


>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|B Chain B, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|C Chain C, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|D Chain D, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
          Length = 573

 Score = 30.4 bits (67), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 523 MLLENVLKLPSEVAFPKSIKELSPKLKEEWQWH-LFEA 559
           MLL + ++LP+ + FP  ++EL  +L++E Q   LFEA
Sbjct: 150 MLLRHSVELPARLKFPPGMEELQAQLEKELQGGTLFEA 187


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,268,568
Number of Sequences: 62578
Number of extensions: 1169747
Number of successful extensions: 2515
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2501
Number of HSP's gapped (non-prelim): 18
length of query: 1038
length of database: 14,973,337
effective HSP length: 109
effective length of query: 929
effective length of database: 8,152,335
effective search space: 7573519215
effective search space used: 7573519215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)