Query 001646
Match_columns 1038
No_of_seqs 379 out of 1678
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03088 stp2 sugar transfera 100.0 1.3E-34 2.8E-39 328.4 36.9 358 144-529 1-374 (374)
2 TIGR03449 mycothiol_MshA UDP-N 100.0 3.3E-33 7.2E-38 320.5 35.2 352 156-530 19-404 (405)
3 cd04962 GT1_like_5 This family 100.0 3.8E-33 8.3E-38 313.6 32.8 349 146-528 2-371 (371)
4 PRK15179 Vi polysaccharide bio 100.0 1.2E-32 2.6E-37 335.1 38.5 358 138-526 274-692 (694)
5 TIGR02472 sucr_P_syn_N sucrose 100.0 9.3E-33 2E-37 322.8 35.6 353 153-526 22-439 (439)
6 PLN02871 UDP-sulfoquinovose:DA 100.0 1.7E-32 3.6E-37 322.8 36.5 353 142-531 56-438 (465)
7 cd03796 GT1_PIG-A_like This fa 100.0 2.3E-32 5E-37 314.6 35.4 345 146-531 1-371 (398)
8 cd03819 GT1_WavL_like This fam 100.0 6E-32 1.3E-36 301.2 35.0 332 150-516 3-354 (355)
9 PRK10307 putative glycosyl tra 100.0 5.7E-32 1.2E-36 312.2 35.6 362 145-530 1-410 (412)
10 cd03807 GT1_WbnK_like This fam 100.0 8.6E-32 1.9E-36 295.1 34.6 348 146-526 1-365 (365)
11 cd03792 GT1_Trehalose_phosphor 100.0 1.5E-31 3.3E-36 304.3 35.7 346 146-527 1-371 (372)
12 cd04951 GT1_WbdM_like This fam 100.0 1E-31 2.2E-36 299.0 33.0 344 146-526 1-359 (360)
13 PRK15427 colanic acid biosynth 100.0 1.4E-31 3E-36 310.3 35.1 342 146-527 2-405 (406)
14 TIGR02149 glgA_Coryne glycogen 100.0 1.5E-31 3.2E-36 303.8 34.6 354 146-529 2-388 (388)
15 cd03805 GT1_ALG2_like This fam 100.0 2.6E-31 5.6E-36 302.2 33.8 351 145-521 1-392 (392)
16 PRK00654 glgA glycogen synthas 100.0 2.1E-31 4.6E-36 313.9 33.3 360 145-530 1-465 (466)
17 TIGR02468 sucrsPsyn_pln sucros 100.0 6.6E-31 1.4E-35 325.5 37.4 368 142-531 167-674 (1050)
18 PRK15484 lipopolysaccharide 1, 100.0 9.5E-31 2.1E-35 300.5 34.7 329 153-529 17-379 (380)
19 cd03812 GT1_CapH_like This fam 100.0 1E-30 2.3E-35 291.6 31.3 333 146-509 1-346 (358)
20 cd03821 GT1_Bme6_like This fam 100.0 1.2E-30 2.7E-35 287.0 31.2 351 146-522 1-374 (375)
21 PLN02316 synthase/transferase 100.0 2.2E-30 4.8E-35 321.7 36.2 352 143-530 586-1036(1036)
22 PLN02939 transferase, transfer 100.0 5.3E-30 1.2E-34 313.4 37.7 366 142-531 479-970 (977)
23 TIGR02095 glgA glycogen/starch 100.0 4.5E-30 9.9E-35 302.7 34.8 357 145-528 1-473 (473)
24 cd03820 GT1_amsD_like This fam 100.0 1E-29 2.3E-34 276.2 34.8 332 146-522 1-347 (348)
25 TIGR02470 sucr_synth sucrose s 100.0 1.1E-29 2.5E-34 309.4 37.7 359 144-525 255-745 (784)
26 cd03800 GT1_Sucrose_synthase T 100.0 5.7E-30 1.2E-34 289.8 31.8 347 154-522 18-397 (398)
27 PRK15490 Vi polysaccharide bio 100.0 9E-30 2E-34 299.0 34.5 345 146-527 163-575 (578)
28 cd03818 GT1_ExpC_like This fam 100.0 6.9E-30 1.5E-34 293.6 32.7 347 146-522 1-395 (396)
29 PRK14099 glycogen synthase; Pr 100.0 9.3E-30 2E-34 301.4 34.2 362 143-530 2-481 (485)
30 cd05844 GT1_like_7 Glycosyltra 100.0 9.3E-30 2E-34 285.8 31.4 338 147-523 2-366 (367)
31 cd03808 GT1_cap1E_like This fa 100.0 4E-29 8.6E-34 272.8 34.7 339 146-522 1-358 (359)
32 cd03814 GT1_like_2 This family 100.0 2.8E-29 6E-34 277.4 33.7 347 146-526 1-364 (364)
33 cd03822 GT1_ecORF704_like This 100.0 3.6E-29 7.9E-34 277.2 33.5 350 146-526 1-366 (366)
34 cd03817 GT1_UGDG_like This fam 100.0 6.4E-29 1.4E-33 273.9 35.3 352 146-527 1-373 (374)
35 cd03791 GT1_Glycogen_synthase_ 100.0 3.4E-29 7.4E-34 294.3 33.7 357 146-526 1-475 (476)
36 cd03825 GT1_wcfI_like This fam 100.0 5.6E-29 1.2E-33 277.5 32.5 332 145-528 1-365 (365)
37 cd03801 GT1_YqgM_like This fam 100.0 8.9E-29 1.9E-33 269.1 31.8 352 146-526 1-374 (374)
38 PLN00142 sucrose synthase 100.0 5E-29 1.1E-33 303.9 32.9 355 151-525 297-768 (815)
39 PRK09922 UDP-D-galactose:(gluc 100.0 5.2E-29 1.1E-33 283.0 30.6 335 145-530 1-358 (359)
40 cd03813 GT1_like_3 This family 100.0 2.3E-29 4.9E-34 297.4 28.0 284 214-526 172-475 (475)
41 cd04955 GT1_like_6 This family 100.0 2.3E-28 5E-33 272.8 34.2 341 146-526 1-363 (363)
42 cd03795 GT1_like_4 This family 100.0 1.2E-28 2.5E-33 274.1 31.3 337 146-518 1-357 (357)
43 cd03811 GT1_WabH_like This fam 100.0 1E-28 2.2E-33 268.4 30.1 332 146-513 1-352 (353)
44 PRK10125 putative glycosyl tra 100.0 4.1E-29 8.9E-34 289.8 28.2 337 145-528 1-405 (405)
45 cd03799 GT1_amsK_like This is 100.0 1E-28 2.2E-33 274.4 30.1 331 146-520 1-354 (355)
46 PRK14098 glycogen synthase; Pr 100.0 2.3E-28 5E-33 289.8 34.5 360 144-530 5-488 (489)
47 cd03802 GT1_AviGT4_like This f 100.0 2.2E-28 4.8E-33 270.4 30.5 314 145-526 1-335 (335)
48 cd03794 GT1_wbuB_like This fam 100.0 4E-28 8.6E-33 267.8 31.1 351 146-521 1-393 (394)
49 cd03798 GT1_wlbH_like This fam 100.0 5.5E-28 1.2E-32 264.4 31.8 346 148-528 2-377 (377)
50 PLN02949 transferase, transfer 100.0 8.7E-28 1.9E-32 282.8 34.3 359 143-530 32-459 (463)
51 cd03823 GT1_ExpE7_like This fa 100.0 4.7E-28 1E-32 266.5 30.0 326 146-526 1-358 (359)
52 cd03809 GT1_mtfB_like This fam 100.0 3.8E-28 8.2E-33 269.0 27.4 343 146-522 1-364 (365)
53 cd03806 GT1_ALG11_like This fa 100.0 7.4E-27 1.6E-31 272.0 33.9 345 146-518 2-417 (419)
54 PLN02846 digalactosyldiacylgly 100.0 6.6E-27 1.4E-31 273.4 33.3 340 143-528 3-392 (462)
55 cd03816 GT1_ALG1_like This fam 100.0 5.2E-27 1.1E-31 272.7 32.3 347 146-509 5-399 (415)
56 TIGR02918 accessory Sec system 99.9 2.1E-26 4.6E-31 273.5 27.3 277 212-528 208-500 (500)
57 TIGR03087 stp1 sugar transfera 99.9 5E-25 1.1E-29 253.7 30.5 331 156-526 13-395 (397)
58 cd04946 GT1_AmsK_like This fam 99.9 1.1E-24 2.3E-29 252.8 33.2 338 147-522 2-406 (407)
59 KOG1111 N-acetylglucosaminyltr 99.9 8.9E-26 1.9E-30 247.4 21.3 346 146-531 2-370 (426)
60 PLN02501 digalactosyldiacylgly 99.9 3.5E-24 7.6E-29 254.2 32.0 338 144-525 322-707 (794)
61 cd03804 GT1_wbaZ_like This fam 99.9 2.7E-24 5.8E-29 242.1 26.4 318 146-521 1-350 (351)
62 cd04949 GT1_gtfA_like This fam 99.9 1E-24 2.2E-29 247.1 22.9 271 214-521 98-372 (372)
63 PRK00726 murG undecaprenyldiph 99.9 4.3E-23 9.4E-28 233.8 28.0 322 145-526 2-356 (357)
64 PHA01630 putative group 1 glyc 99.9 6.8E-23 1.5E-27 232.0 28.5 288 163-527 16-330 (331)
65 PLN02275 transferase, transfer 99.9 6.9E-23 1.5E-27 234.7 28.8 308 156-489 14-371 (371)
66 cd03785 GT1_MurG MurG is an N- 99.9 2E-22 4.2E-27 226.6 26.9 312 151-519 4-349 (350)
67 PRK05749 3-deoxy-D-manno-octul 99.9 1.2E-21 2.6E-26 227.9 26.6 338 157-529 60-421 (425)
68 TIGR01133 murG undecaprenyldip 99.9 1.3E-21 2.7E-26 219.9 24.9 314 146-519 2-346 (348)
69 PHA01633 putative glycosyl tra 99.9 3.2E-21 7E-26 217.9 26.6 301 154-522 8-334 (335)
70 PF00534 Glycos_transf_1: Glyc 99.9 1E-21 2.2E-26 199.0 18.5 167 321-508 2-172 (172)
71 cd03788 GT1_TPS Trehalose-6-Ph 99.9 1.5E-21 3.3E-26 230.2 19.2 289 215-524 131-458 (460)
72 PRK13609 diacylglycerol glucos 99.9 3.7E-20 7.9E-25 212.1 27.8 333 143-528 3-372 (380)
73 KOG0853 Glycosyltransferase [C 99.9 3E-20 6.5E-25 215.4 25.9 370 143-529 33-469 (495)
74 cd03793 GT1_Glycogen_synthase_ 99.9 3.3E-20 7.1E-25 218.9 25.8 305 214-530 147-589 (590)
75 TIGR02400 trehalose_OtsA alpha 99.8 2E-19 4.2E-24 211.8 24.6 288 215-525 127-454 (456)
76 cd01635 Glycosyltransferase_GT 99.8 9.3E-19 2E-23 180.8 23.4 222 148-473 2-229 (229)
77 COG0297 GlgA Glycogen synthase 99.8 8.9E-18 1.9E-22 197.3 31.5 192 321-533 279-483 (487)
78 PRK13608 diacylglycerol glucos 99.8 2.4E-18 5.1E-23 199.0 25.9 335 144-531 5-375 (391)
79 PLN02605 monogalactosyldiacylg 99.8 2.9E-18 6.3E-23 197.4 23.4 272 206-525 91-379 (382)
80 PLN03063 alpha,alpha-trehalose 99.8 4.1E-18 8.9E-23 212.2 23.8 296 215-530 147-480 (797)
81 PRK14501 putative bifunctional 99.7 4.1E-17 8.9E-22 202.6 20.6 293 215-530 133-465 (726)
82 cd04950 GT1_like_1 Glycosyltra 99.7 8E-16 1.7E-20 176.6 27.6 333 146-527 5-371 (373)
83 COG0438 RfaG Glycosyltransfera 99.7 1.3E-14 2.8E-19 155.3 33.3 176 335-530 200-379 (381)
84 PRK00025 lpxB lipid-A-disaccha 99.7 6.1E-16 1.3E-20 176.8 24.2 334 145-527 2-373 (380)
85 TIGR00236 wecB UDP-N-acetylglu 99.7 7.9E-16 1.7E-20 175.6 24.9 335 146-521 2-361 (365)
86 KOG1387 Glycosyltransferase [C 99.7 2.2E-14 4.8E-19 157.3 26.1 188 331-531 266-462 (465)
87 TIGR02398 gluc_glyc_Psyn gluco 99.7 9.9E-15 2.1E-19 172.3 24.1 207 300-526 250-481 (487)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.6 1.6E-14 3.5E-19 163.5 22.8 315 146-502 1-345 (363)
89 PRK09814 beta-1,6-galactofuran 99.6 2.5E-13 5.4E-18 154.0 26.7 286 156-513 14-317 (333)
90 KOG2941 Beta-1,4-mannosyltrans 99.5 4.4E-12 9.5E-17 139.7 29.6 347 141-509 10-424 (444)
91 PF13692 Glyco_trans_1_4: Glyc 99.5 2.2E-14 4.7E-19 139.9 9.4 131 335-491 3-135 (135)
92 TIGR00215 lpxB lipid-A-disacch 99.5 1.8E-12 3.9E-17 150.2 26.7 321 144-512 5-369 (385)
93 PLN03064 alpha,alpha-trehalose 99.5 3.6E-13 7.7E-18 168.3 20.7 295 215-529 231-563 (934)
94 TIGR03713 acc_sec_asp1 accesso 99.5 2.5E-13 5.4E-18 162.5 17.7 166 336-525 321-519 (519)
95 COG0707 MurG UDP-N-acetylgluco 99.4 1.6E-10 3.5E-15 132.5 27.6 318 150-523 4-353 (357)
96 PRK12446 undecaprenyldiphospho 99.3 2.9E-10 6.2E-15 130.5 25.6 292 149-498 4-329 (352)
97 PF13524 Glyco_trans_1_2: Glyc 99.1 2.2E-10 4.8E-15 105.6 9.5 90 426-522 1-91 (92)
98 PF05693 Glycogen_syn: Glycoge 99.1 9.3E-09 2E-13 122.2 22.6 111 416-530 462-584 (633)
99 PRK10117 trehalose-6-phosphate 99.0 2.2E-08 4.9E-13 118.0 21.6 213 300-531 221-457 (474)
100 PF00982 Glyco_transf_20: Glyc 99.0 3.3E-08 7.2E-13 117.4 21.9 288 214-526 140-473 (474)
101 TIGR02094 more_P_ylases alpha- 98.9 2.9E-08 6.2E-13 121.0 19.6 183 330-525 385-598 (601)
102 TIGR02919 accessory Sec system 98.9 1.2E-08 2.5E-13 120.2 15.2 123 354-500 291-417 (438)
103 COG1519 KdtA 3-deoxy-D-manno-o 98.9 9.4E-07 2E-11 101.6 28.6 319 158-511 60-403 (419)
104 TIGR03492 conserved hypothetic 98.8 4.3E-07 9.3E-12 106.1 23.3 169 329-521 200-392 (396)
105 PLN02205 alpha,alpha-trehalose 98.7 4E-07 8.7E-12 115.0 20.4 295 217-530 203-554 (854)
106 COG0380 OtsA Trehalose-6-phosp 98.7 9.6E-07 2.1E-11 104.2 21.9 294 215-527 147-479 (486)
107 TIGR03590 PseG pseudaminic aci 98.7 2.1E-06 4.6E-11 95.7 23.6 248 153-457 9-268 (279)
108 COG3914 Spy Predicted O-linked 98.7 2.8E-06 6E-11 100.2 23.5 333 142-529 257-615 (620)
109 PF13439 Glyco_transf_4: Glyco 98.6 6.9E-08 1.5E-12 96.4 5.3 157 152-313 7-176 (177)
110 cd03784 GT1_Gtf_like This fami 98.5 4.5E-05 9.7E-10 88.4 28.7 82 402-491 285-372 (401)
111 TIGR01426 MGT glycosyltransfer 98.5 2.9E-05 6.3E-10 90.0 26.4 111 403-524 273-389 (392)
112 cd04299 GT1_Glycogen_Phosphory 98.5 3E-06 6.4E-11 105.7 17.6 185 330-525 474-687 (778)
113 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 1.1E-05 2.3E-10 93.5 21.1 303 146-491 2-338 (365)
114 PF13844 Glyco_transf_41: Glyc 98.5 7E-06 1.5E-10 96.9 19.2 182 324-528 275-467 (468)
115 PF13579 Glyco_trans_4_4: Glyc 98.4 6.7E-07 1.4E-11 87.8 8.1 143 157-305 1-159 (160)
116 PF04007 DUF354: Protein of un 98.3 9.4E-05 2E-09 84.7 24.1 279 158-491 11-310 (335)
117 TIGR00661 MJ1255 conserved hyp 98.3 7.4E-05 1.6E-09 84.7 22.1 78 407-491 230-314 (321)
118 PF13528 Glyco_trans_1_3: Glyc 98.3 0.00018 3.9E-09 80.6 24.3 118 332-488 191-317 (318)
119 COG0381 WecB UDP-N-acetylgluco 98.2 0.00024 5.2E-09 81.6 24.6 338 144-523 3-370 (383)
120 PF13477 Glyco_trans_4_2: Glyc 98.2 3.2E-05 7E-10 75.9 14.0 100 146-251 1-110 (139)
121 COG0763 LpxB Lipid A disacchar 98.0 0.00054 1.2E-08 78.7 21.6 319 144-509 1-359 (381)
122 PRK01021 lpxB lipid-A-disaccha 98.0 0.0013 2.9E-08 79.8 25.0 312 142-510 224-587 (608)
123 PF02684 LpxB: Lipid-A-disacch 98.0 0.00059 1.3E-08 79.3 20.8 154 322-500 173-346 (373)
124 PHA03392 egt ecdysteroid UDP-g 97.8 0.024 5.2E-07 68.8 32.3 144 332-509 295-447 (507)
125 PF02350 Epimerase_2: UDP-N-ac 97.8 0.00025 5.4E-09 81.7 14.3 259 207-501 59-325 (346)
126 COG1819 Glycosyl transferases, 97.8 0.0011 2.5E-08 77.9 19.5 127 377-524 266-398 (406)
127 COG4641 Uncharacterized protei 97.8 0.0025 5.3E-08 73.0 21.1 117 408-529 239-363 (373)
128 COG3980 spsG Spore coat polysa 97.7 0.004 8.6E-08 68.8 21.0 291 146-506 2-305 (318)
129 COG1817 Uncharacterized protei 97.5 0.02 4.3E-07 64.3 22.9 280 157-491 10-314 (346)
130 PRK02797 4-alpha-L-fucosyltran 97.5 0.025 5.5E-07 63.7 23.7 271 214-529 38-318 (322)
131 PF07429 Glyco_transf_56: 4-al 97.4 0.034 7.3E-07 63.6 22.9 283 198-527 57-355 (360)
132 PRK14089 ipid-A-disaccharide s 97.2 0.018 4E-07 66.5 18.7 95 333-456 167-261 (347)
133 COG4671 Predicted glycosyl tra 97.2 0.044 9.5E-07 62.5 20.7 140 331-491 217-365 (400)
134 KOG3742 Glycogen synthase [Car 97.0 0.0052 1.1E-07 70.9 12.2 108 416-529 493-614 (692)
135 PF08323 Glyco_transf_5: Starc 97.0 0.0027 5.9E-08 69.7 9.3 39 146-184 1-43 (245)
136 PF04464 Glyphos_transf: CDP-G 97.0 0.022 4.7E-07 65.8 17.0 305 142-491 11-336 (369)
137 PF04101 Glyco_tran_28_C: Glyc 96.9 5.1E-05 1.1E-09 77.6 -5.0 89 407-504 56-154 (167)
138 PF09314 DUF1972: Domain of un 96.7 0.026 5.7E-07 59.6 13.8 104 146-249 3-127 (185)
139 PF11440 AGT: DNA alpha-glucos 96.4 0.76 1.6E-05 51.2 22.1 299 158-491 2-353 (355)
140 KOG4626 O-linked N-acetylgluco 96.0 0.2 4.3E-06 60.6 16.9 182 325-530 750-943 (966)
141 PRK10017 colanic acid biosynth 95.8 5 0.00011 48.0 27.8 95 392-499 294-397 (426)
142 PF06258 Mito_fiss_Elm1: Mitoc 95.0 3.3 7.2E-05 47.4 21.7 243 158-459 2-259 (311)
143 COG3660 Predicted nucleoside-d 94.7 2.2 4.7E-05 47.4 18.1 253 156-456 10-272 (329)
144 cd03789 GT1_LPS_heptosyltransf 94.3 5 0.00011 44.5 20.9 90 352-461 138-229 (279)
145 KOG1050 Trehalose-6-phosphate 94.2 1.6 3.4E-05 55.3 17.9 157 332-502 274-448 (732)
146 PLN02670 transferase, transfer 93.4 0.92 2E-05 54.8 13.7 111 408-527 341-465 (472)
147 PLN02448 UDP-glycosyltransfera 92.9 1.3 2.9E-05 53.2 14.0 130 332-491 273-415 (459)
148 COG0058 GlgP Glucan phosphoryl 92.2 0.8 1.7E-05 57.5 11.0 140 330-476 483-631 (750)
149 PRK10916 ADP-heptose:LPS hepto 92.0 25 0.00055 40.4 22.5 112 324-455 170-286 (348)
150 PLN02210 UDP-glucosyl transfer 91.7 3.3 7E-05 49.9 15.2 110 407-521 325-449 (456)
151 PF00201 UDPGT: UDP-glucoronos 91.6 1.5 3.2E-05 52.8 12.3 80 407-491 324-409 (500)
152 PLN02562 UDP-glycosyltransfera 90.8 4.9 0.00011 48.3 15.5 85 407-499 329-418 (448)
153 PLN02863 UDP-glucoronosyl/UDP- 90.8 4 8.7E-05 49.5 14.8 114 407-525 344-469 (477)
154 PLN03004 UDP-glycosyltransfera 90.3 2.4 5.1E-05 51.1 12.2 80 407-491 335-424 (451)
155 PLN02410 UDP-glucoronosyl/UDP- 90.1 4.3 9.3E-05 48.9 14.2 80 407-491 325-410 (451)
156 TIGR02195 heptsyl_trn_II lipop 90.0 3.3 7.1E-05 47.2 12.6 113 322-456 162-277 (334)
157 COG0859 RfaF ADP-heptose:LPS h 89.7 44 0.00095 38.5 23.3 101 333-456 175-277 (334)
158 PF00343 Phosphorylase: Carboh 89.7 6.6 0.00014 49.5 15.6 139 330-475 440-596 (713)
159 PLN03007 UDP-glucosyltransfera 89.5 7.6 0.00016 47.1 15.8 80 407-491 346-440 (482)
160 PLN02208 glycosyltransferase f 88.2 13 0.00027 44.8 16.2 94 407-508 312-416 (442)
161 PF04230 PS_pyruv_trans: Polys 87.9 41 0.00088 35.8 20.7 38 413-457 247-284 (286)
162 PRK14986 glycogen phosphorylas 86.8 2.8 6E-05 53.5 9.9 148 330-484 539-703 (815)
163 PF10087 DUF2325: Uncharacteri 86.8 1.1 2.3E-05 42.4 4.9 81 379-463 2-89 (97)
164 PRK14985 maltodextrin phosphor 86.7 3.9 8.5E-05 52.0 11.1 140 330-475 525-681 (798)
165 PF05159 Capsule_synth: Capsul 86.5 4.7 0.0001 44.7 10.7 87 353-456 139-225 (269)
166 PLN02167 UDP-glycosyltransfera 86.2 10 0.00022 45.9 14.1 78 407-491 341-434 (475)
167 PLN02152 indole-3-acetate beta 86.1 9.7 0.00021 46.0 13.7 80 407-491 328-417 (455)
168 PLN02173 UDP-glucosyl transfer 86.0 6.9 0.00015 47.1 12.4 80 407-491 318-408 (449)
169 PRK10422 lipopolysaccharide co 85.8 16 0.00035 42.1 15.0 104 333-456 183-288 (352)
170 PLN02764 glycosyltransferase f 85.4 32 0.00069 41.7 17.5 114 408-529 319-447 (453)
171 TIGR02093 P_ylase glycogen/sta 84.4 3.9 8.5E-05 52.0 9.5 148 330-484 523-687 (794)
172 cd04300 GT1_Glycogen_Phosphory 83.6 5.3 0.00011 51.0 10.3 146 330-483 526-689 (797)
173 PF01075 Glyco_transf_9: Glyco 82.8 7 0.00015 42.3 9.8 104 331-455 103-208 (247)
174 PLN02554 UDP-glycosyltransfera 82.1 11 0.00023 45.8 11.9 95 407-509 343-459 (481)
175 PF15024 Glyco_transf_18: Glyc 81.1 9.5 0.00021 46.7 10.7 104 407-527 323-455 (559)
176 PLN02555 limonoid glucosyltran 80.7 28 0.00061 42.4 14.7 78 407-491 338-429 (480)
177 KOG1192 UDP-glucuronosyl and U 80.3 27 0.00059 41.8 14.5 109 407-523 336-451 (496)
178 PLN02207 UDP-glycosyltransfera 80.1 22 0.00047 43.2 13.5 79 407-490 333-425 (468)
179 TIGR03609 S_layer_CsaB polysac 79.8 1.1E+02 0.0024 34.3 19.7 85 353-456 190-276 (298)
180 PF10093 DUF2331: Uncharacteri 79.7 73 0.0016 37.7 16.9 109 321-457 168-290 (374)
181 PLN00414 glycosyltransferase f 78.3 59 0.0013 39.2 16.3 94 408-509 314-418 (446)
182 PRK10964 ADP-heptose:LPS hepto 76.2 23 0.0005 40.2 11.6 101 333-458 178-281 (322)
183 TIGR02193 heptsyl_trn_I lipopo 75.6 37 0.0008 38.3 13.1 132 332-488 178-318 (319)
184 TIGR02201 heptsyl_trn_III lipo 74.2 25 0.00055 40.2 11.4 104 333-456 181-286 (344)
185 PLN02992 coniferyl-alcohol glu 74.2 63 0.0014 39.5 15.1 80 407-491 339-427 (481)
186 PF10933 DUF2827: Protein of u 71.6 2.1E+02 0.0046 33.7 20.6 330 154-524 15-362 (364)
187 PF03016 Exostosin: Exostosin 70.8 4.5 9.8E-05 45.0 4.1 70 415-486 228-300 (302)
188 PLN00164 glucosyltransferase; 70.7 9.9 0.00021 46.2 7.3 79 408-491 341-431 (480)
189 PF00862 Sucrose_synth: Sucros 69.7 20 0.00044 43.5 9.2 34 214-249 400-433 (550)
190 KOG2884 26S proteasome regulat 64.1 86 0.0019 34.3 11.6 120 334-491 108-229 (259)
191 PLN02534 UDP-glycosyltransfera 63.2 1.6E+02 0.0035 36.1 15.5 79 407-490 345-443 (491)
192 PF08660 Alg14: Oligosaccharid 62.0 14 0.00031 38.6 5.5 31 156-186 7-39 (170)
193 COG2247 LytB Putative cell wal 59.7 41 0.00089 38.6 8.8 82 362-458 70-164 (337)
194 PF11071 DUF2872: Protein of u 54.7 41 0.00089 33.9 6.8 71 418-489 67-140 (141)
195 TIGR01012 Sa_S2_E_A ribosomal 51.0 1.3E+02 0.0029 32.5 10.6 104 378-491 63-170 (196)
196 KOG1021 Acetylglucosaminyltran 50.0 1.4E+02 0.003 36.3 11.9 111 375-491 289-409 (464)
197 PF03033 Glyco_transf_28: Glyc 49.2 26 0.00057 34.2 4.7 49 154-204 6-54 (139)
198 PRK10360 DNA-binding transcrip 46.6 1.8E+02 0.0039 29.4 10.7 68 423-491 47-118 (196)
199 PRK04020 rps2P 30S ribosomal p 46.4 1.7E+02 0.0038 31.7 10.7 104 378-491 69-176 (204)
200 PRK10840 transcriptional regul 45.6 2.1E+02 0.0046 30.1 11.3 112 377-491 4-126 (216)
201 PRK04155 chaperone protein Hch 44.1 1.4E+02 0.0031 34.0 10.1 77 106-186 15-102 (287)
202 TIGR02069 cyanophycinase cyano 44.0 1.3E+02 0.0028 33.5 9.6 101 352-460 12-127 (250)
203 KOG0780 Signal recognition par 44.0 56 0.0012 38.7 6.8 85 139-224 95-192 (483)
204 PF03853 YjeF_N: YjeF-related 42.6 46 0.001 34.6 5.6 41 141-184 22-62 (169)
205 PTZ00254 40S ribosomal protein 40.7 1.8E+02 0.0039 32.6 9.9 104 378-491 73-180 (249)
206 cd06318 PBP1_ABC_sugar_binding 40.4 1.1E+02 0.0024 33.2 8.4 87 146-247 1-87 (282)
207 PF05686 Glyco_transf_90: Glyc 39.9 97 0.0021 36.9 8.3 89 437-528 225-318 (395)
208 PF10686 DUF2493: Protein of u 39.6 1.7E+02 0.0036 26.4 7.8 57 334-405 3-60 (71)
209 TIGR03646 YtoQ_fam YtoQ family 38.9 1E+02 0.0022 31.3 6.8 98 388-489 11-143 (144)
210 PF03401 TctC: Tripartite tric 38.9 2.4E+02 0.0051 31.7 10.9 42 462-506 199-244 (274)
211 cd06310 PBP1_ABC_sugar_binding 38.8 1.6E+02 0.0035 31.7 9.3 37 146-182 1-37 (273)
212 PRK13940 glutamyl-tRNA reducta 38.6 1.6E+02 0.0035 35.3 9.9 93 378-487 207-302 (414)
213 TIGR02026 BchE magnesium-proto 38.1 1.2E+02 0.0026 37.2 8.9 86 146-246 1-98 (497)
214 COG1663 LpxK Tetraacyldisaccha 38.0 75 0.0016 37.0 6.7 45 142-186 43-89 (336)
215 PF00072 Response_reg: Respons 37.3 1.6E+02 0.0035 26.9 7.9 93 391-486 11-112 (112)
216 cd03146 GAT1_Peptidase_E Type 36.8 1.5E+02 0.0032 32.0 8.5 82 377-459 32-124 (212)
217 cd06302 PBP1_LsrB_Quorum_Sensi 35.7 1.9E+02 0.0042 32.1 9.5 87 146-246 1-87 (298)
218 PF04413 Glycos_transf_N: 3-De 35.6 2.6E+02 0.0057 29.6 10.0 87 157-245 31-123 (186)
219 cd06315 PBP1_ABC_sugar_binding 34.9 2.1E+02 0.0046 31.3 9.6 86 146-246 2-87 (280)
220 smart00672 CAP10 Putative lipo 34.9 2.5E+02 0.0054 31.5 10.1 89 437-528 156-249 (256)
221 TIGR00853 pts-lac PTS system, 34.8 56 0.0012 30.9 4.3 74 379-457 7-83 (95)
222 PF08288 PIGA: PIGA (GPI ancho 34.7 44 0.00096 31.6 3.4 43 207-249 42-84 (90)
223 cd06306 PBP1_TorT-like TorT-li 34.6 2.1E+02 0.0045 31.1 9.4 87 146-246 1-87 (268)
224 PLN03015 UDP-glucosyl transfer 34.5 72 0.0016 38.9 6.2 78 408-490 337-425 (470)
225 cd06305 PBP1_methylthioribose_ 33.8 1.8E+02 0.004 31.2 8.8 86 146-246 1-86 (273)
226 cd03145 GAT1_cyanophycinase Ty 33.3 2.6E+02 0.0057 30.3 9.7 85 377-461 30-129 (217)
227 PF00532 Peripla_BP_1: Peripla 33.0 2.7E+02 0.0059 31.0 10.2 85 145-248 2-87 (279)
228 cd06320 PBP1_allose_binding Pe 33.0 2.1E+02 0.0046 30.9 9.1 38 146-183 1-38 (275)
229 cd06300 PBP1_ABC_sugar_binding 32.9 2.1E+02 0.0046 30.8 9.1 85 146-246 1-91 (272)
230 COG1887 TagB Putative glycosyl 32.7 9.2E+02 0.02 28.7 15.4 74 408-491 271-353 (388)
231 KOG0832 Mitochondrial/chloropl 32.6 5E+02 0.011 28.9 11.3 118 327-477 101-220 (251)
232 PF12000 Glyco_trans_4_3: Gkyc 32.4 1.5E+02 0.0033 31.3 7.4 29 214-245 65-93 (171)
233 PF08497 Radical_SAM_N: Radica 32.2 2.5E+02 0.0055 32.2 9.4 57 141-197 13-69 (302)
234 cd01574 PBP1_LacI Ligand-bindi 32.1 2.9E+02 0.0064 29.4 10.0 86 147-248 2-87 (264)
235 COG0373 HemA Glutamyl-tRNA red 32.0 9.9E+02 0.021 28.9 17.4 96 378-487 204-303 (414)
236 cd03129 GAT1_Peptidase_E_like 31.9 2.4E+02 0.0052 30.1 9.1 84 377-460 30-125 (210)
237 cd05565 PTS_IIB_lactose PTS_II 31.6 75 0.0016 30.5 4.6 72 380-456 5-79 (99)
238 cd05564 PTS_IIB_chitobiose_lic 31.3 80 0.0017 29.8 4.7 73 379-456 3-78 (96)
239 PRK13011 formyltetrahydrofolat 31.1 1.8E+02 0.004 33.1 8.4 104 140-252 85-198 (286)
240 PF06925 MGDG_synth: Monogalac 30.6 82 0.0018 32.4 5.1 44 205-248 79-124 (169)
241 PRK00676 hemA glutamyl-tRNA re 30.5 8.1E+02 0.018 28.8 13.5 132 377-528 175-319 (338)
242 PRK05282 (alpha)-aspartyl dipe 30.2 2.4E+02 0.0052 31.3 8.8 80 378-460 33-124 (233)
243 COG0052 RpsB Ribosomal protein 28.8 4.2E+02 0.0091 29.8 10.2 37 424-464 157-195 (252)
244 PRK13396 3-deoxy-7-phosphohept 28.6 4.8E+02 0.01 30.8 11.3 124 333-491 99-234 (352)
245 PF02310 B12-binding: B12 bind 27.9 2.5E+02 0.0054 26.7 7.7 68 161-246 15-87 (121)
246 PF11997 DUF3492: Domain of un 27.8 1.1E+02 0.0023 34.5 5.8 35 214-249 171-205 (268)
247 PRK09526 lacI lac repressor; R 27.5 4.7E+02 0.01 29.4 11.0 89 143-246 62-150 (342)
248 cd06293 PBP1_LacI_like_11 Liga 27.4 2.9E+02 0.0062 29.7 8.9 83 147-247 2-85 (269)
249 PF12038 DUF3524: Domain of un 27.3 2.1E+02 0.0045 30.2 7.3 94 147-253 3-96 (168)
250 cd01538 PBP1_ABC_xylose_bindin 27.0 2.6E+02 0.0056 30.7 8.7 87 146-247 1-87 (288)
251 COG0541 Ffh Signal recognition 27.0 1.7E+02 0.0036 35.4 7.3 108 112-224 69-191 (451)
252 PF03154 Atrophin-1: Atrophin- 26.3 50 0.0011 42.9 3.0 31 982-1012 717-747 (982)
253 PF01408 GFO_IDH_MocA: Oxidore 26.1 2.9E+02 0.0062 26.1 7.7 65 377-455 26-92 (120)
254 KOG3349 Predicted glycosyltran 26.0 2E+02 0.0044 30.0 6.7 42 408-455 65-106 (170)
255 cd06297 PBP1_LacI_like_12 Liga 25.9 4.1E+02 0.0089 28.7 9.8 84 147-247 2-85 (269)
256 PRK10653 D-ribose transporter 25.7 3.7E+02 0.008 29.7 9.6 46 138-183 20-65 (295)
257 cd06316 PBP1_ABC_sugar_binding 25.4 3.5E+02 0.0076 29.7 9.3 36 146-181 1-36 (294)
258 cd06284 PBP1_LacI_like_6 Ligan 25.3 3.4E+02 0.0074 28.8 9.0 82 147-246 2-83 (267)
259 TIGR02955 TMAO_TorT TMAO reduc 25.0 3.5E+02 0.0077 29.9 9.3 86 146-246 1-87 (295)
260 cd01575 PBP1_GntR Ligand-bindi 24.7 4.5E+02 0.0098 27.9 9.8 82 147-246 2-84 (268)
261 PF10649 DUF2478: Protein of u 24.5 94 0.002 32.5 4.2 40 417-456 86-130 (159)
262 PRK13489 chemoreceptor glutami 24.5 67 0.0015 35.5 3.3 55 955-1009 142-203 (233)
263 PRK13435 response regulator; P 24.5 5.3E+02 0.012 24.9 9.5 111 377-491 6-121 (145)
264 PRK10355 xylF D-xylose transpo 24.1 3.7E+02 0.0081 30.7 9.4 86 143-246 24-112 (330)
265 cd06323 PBP1_ribose_binding Pe 24.1 2.9E+02 0.0063 29.4 8.1 36 147-182 2-37 (268)
266 cd06319 PBP1_ABC_sugar_binding 23.7 3.7E+02 0.008 28.9 8.9 38 146-183 1-38 (277)
267 TIGR02574 stabl_TIGR02574 puta 23.5 74 0.0016 27.8 2.8 43 605-647 14-62 (63)
268 COG2204 AtoC Response regulato 23.4 8.2E+02 0.018 30.0 12.3 97 391-491 17-122 (464)
269 cd01542 PBP1_TreR_like Ligand- 23.3 5.4E+02 0.012 27.2 10.1 83 147-247 2-85 (259)
270 cd06317 PBP1_ABC_sugar_binding 23.2 3.1E+02 0.0067 29.4 8.2 82 147-246 2-87 (275)
271 cd01540 PBP1_arabinose_binding 23.0 4.1E+02 0.0089 28.8 9.2 85 146-246 1-85 (289)
272 cd06312 PBP1_ABC_sugar_binding 23.0 4.7E+02 0.01 28.2 9.6 38 146-183 1-39 (271)
273 TIGR00715 precor6x_red precorr 22.7 3.7E+02 0.0081 30.1 8.7 85 397-489 166-255 (256)
274 TIGR00064 ftsY signal recognit 22.6 4.4E+02 0.0096 29.7 9.4 42 142-184 69-110 (272)
275 PRK10494 hypothetical protein; 22.5 2.7E+02 0.0058 31.2 7.6 94 354-458 107-210 (259)
276 PF08465 Herpes_TK_C: Thymidin 22.4 56 0.0012 25.4 1.5 22 632-653 4-25 (33)
277 cd06322 PBP1_ABC_sugar_binding 22.3 3.8E+02 0.0082 28.7 8.7 85 147-246 2-86 (267)
278 cd06273 PBP1_GntR_like_1 This 22.1 4.8E+02 0.01 27.8 9.4 83 147-246 2-84 (268)
279 COG2120 Uncharacterized protei 22.0 3.9E+02 0.0085 29.4 8.7 39 143-186 9-50 (237)
280 cd01967 Nitrogenase_MoFe_alpha 22.0 1.1E+03 0.024 27.7 13.1 119 351-491 136-258 (406)
281 cd06285 PBP1_LacI_like_7 Ligan 21.9 4.7E+02 0.01 28.0 9.3 85 147-248 2-86 (265)
282 cd01536 PBP1_ABC_sugar_binding 21.7 3.9E+02 0.0085 28.2 8.6 86 146-248 1-88 (267)
283 cd06299 PBP1_LacI_like_13 Liga 21.7 5.4E+02 0.012 27.4 9.7 83 147-247 2-85 (265)
284 cd06354 PBP1_BmpA_PnrA_like Pe 21.7 5.5E+02 0.012 27.9 9.9 84 146-246 1-87 (265)
285 COG2327 WcaK Polysaccharide py 21.6 1.2E+03 0.026 27.9 12.9 90 392-491 253-350 (385)
286 PRK10423 transcriptional repre 21.5 6.6E+02 0.014 27.9 10.7 88 143-246 55-142 (327)
287 TIGR00655 PurU formyltetrahydr 21.5 3.9E+02 0.0084 30.4 8.7 103 141-252 81-193 (280)
288 cd06308 PBP1_sensor_kinase_lik 21.4 3.6E+02 0.0079 29.0 8.3 83 146-246 1-87 (270)
289 PRK09590 celB cellobiose phosp 21.3 1.6E+02 0.0036 28.4 4.9 73 379-456 5-82 (104)
290 cd06296 PBP1_CatR_like Ligand- 21.2 5.9E+02 0.013 27.2 9.9 84 147-247 2-85 (270)
291 cd06281 PBP1_LacI_like_5 Ligan 21.1 4.2E+02 0.0092 28.4 8.8 85 147-248 2-87 (269)
292 cd05312 NAD_bind_1_malic_enz N 20.6 3.9E+02 0.0084 30.5 8.3 38 416-454 96-137 (279)
293 cd06298 PBP1_CcpA_like Ligand- 20.6 5.8E+02 0.012 27.1 9.6 84 147-248 2-86 (268)
294 cd06292 PBP1_LacI_like_10 Liga 20.5 5.3E+02 0.012 27.6 9.4 37 147-183 2-38 (273)
295 cd06274 PBP1_FruR Ligand bindi 20.3 5.1E+02 0.011 27.7 9.1 85 147-248 2-86 (264)
296 PRK10867 signal recognition pa 20.1 3.8E+02 0.0082 32.5 8.6 42 142-184 97-139 (433)
297 cd06280 PBP1_LacI_like_4 Ligan 20.0 5.4E+02 0.012 27.5 9.3 82 147-246 2-83 (263)
298 cd06304 PBP1_BmpA_like Peripla 20.0 5.8E+02 0.013 27.5 9.5 85 146-247 1-87 (260)
No 1
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.3e-34 Score=328.39 Aligned_cols=358 Identities=14% Similarity=0.163 Sum_probs=265.3
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC-CcchhhhhhcCceEEEcccc--------hhHHHHhhhc
Q 001646 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED-GRAHEVWRNIGVPVAILQTG--------REKASFVNWL 214 (1038)
Q Consensus 144 ~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~-g~~~~~~e~~gI~v~~l~~~--------rkl~~lI~~~ 214 (1038)
+|+|+.|++.+..||+++++.++++.|.+.||++.|++..+ ++........++.+..+... .++.++++..
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 80 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQL 80 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999998654 33334445556665554322 2355567778
Q ss_pred CCcEEEEcCCchhHHHHHHHhCCCCCCCE-EEEEeCchhHHhHHHhhhhchhHHHHHHHH-HHHhcceEeccCCc-cccc
Q 001646 215 NYDGILVNSLEAKVVISNIMQEPFKSLPL-VWTIHEGTLATRARNYASSGQLELLNDWKK-VFNRATVVVFPDYV-LPMM 291 (1038)
Q Consensus 215 kpDIVhvhs~~~~~~la~La~~~~~gIPv-I~tiHg~~L~~~lek~~~~~~d~lIs~~~~-~~~~a~~vvfps~~-l~vi 291 (1038)
+||+||+|+... ....++.. ..++|+ +++.|+............ ....+. ....++.++..+.. ...+
T Consensus 81 ~~Divh~~~~~~--~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~vs~~~~~~~ 151 (374)
T TIGR03088 81 RPDIVHTRNLAA--LEAQLPAA-LAGVPARIHGEHGRDVFDLDGSNWK------YRWLRRLYRPLIHHYVAVSRDLEDWL 151 (374)
T ss_pred CCCEEEEcchhH--HHHHHHHH-hcCCCeEEEeecCcccccchhhHHH------HHHHHHHHHhcCCeEEEeCHHHHHHH
Confidence 999999998644 22223322 334553 556665322111000000 000111 12234444444433 1111
Q ss_pred --cccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhccc
Q 001646 292 --YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (1038)
Q Consensus 292 --yn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~ 369 (1038)
..+++..++.+|++ |+|...+.+.... +...+......+++++|+++| ++.+. ||++.+++|+..+.++.++
T Consensus 152 ~~~~~~~~~~~~vi~n-gvd~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~~l~~~~~~ 225 (374)
T TIGR03088 152 RGPVKVPPAKIHQIYN-GVDTERFHPSRGD-RSPILPPDFFADESVVVGTVG-RLQAV---KDQPTLVRAFALLVRQLPE 225 (374)
T ss_pred HHhcCCChhhEEEecc-CccccccCCCccc-hhhhhHhhcCCCCCeEEEEEe-cCCcc---cCHHHHHHHHHHHHHhCcc
Confidence 12345577888984 8887544332211 222233334456788999999 78887 9999999999999877653
Q ss_pred CCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHc
Q 001646 370 ENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCF 448 (1038)
Q Consensus 370 ~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~ 448 (1038)
..++++|+++| |+.. +.+++.++++++.+ .|.|+|..+++.++|++||++|+||..| |||++++|||+|
T Consensus 226 ---~~~~~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~pS~~E--g~~~~~lEAma~ 295 (374)
T TIGR03088 226 ---GAERLRLVIVGDGPAR----GACEQMVRAAGLAH-LVWLPGERDDVPALMQALDLFVLPSLAE--GISNTILEAMAS 295 (374)
T ss_pred ---cccceEEEEecCCchH----HHHHHHHHHcCCcc-eEEEcCCcCCHHHHHHhcCEEEeccccc--cCchHHHHHHHc
Confidence 12349999999 7765 78889999999998 8999999999999999999999999988 799999999999
Q ss_pred CCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHH
Q 001646 449 RKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN 527 (1038)
Q Consensus 449 GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye~ 527 (1038)
|+|||+|+.||.+|++.++.+|++++++|+++++++|..++++ ++.+..++.+|++.+ ++|+++.++++|.++|++
T Consensus 296 G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~---~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 296 GLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSD---PAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred CCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 899999999999998 679999999999999987
Q ss_pred hh
Q 001646 528 VL 529 (1038)
Q Consensus 528 vL 529 (1038)
++
T Consensus 373 ~~ 374 (374)
T TIGR03088 373 LL 374 (374)
T ss_pred hC
Confidence 63
No 2
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=3.3e-33 Score=320.51 Aligned_cols=352 Identities=16% Similarity=0.166 Sum_probs=261.4
Q ss_pred CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch--hhhhhcCceEEEcccc-------hh------------HHHHhhh-
Q 001646 156 IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH--EVWRNIGVPVAILQTG-------RE------------KASFVNW- 213 (1038)
Q Consensus 156 iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~--~~~e~~gI~v~~l~~~-------rk------------l~~lI~~- 213 (1038)
.||++.++.++++.|.++||+|+|+|....... ......++.+..++.. .. +...++.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 699999999999999999999999997543211 1111234454433210 00 0111221
Q ss_pred -cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhh--chh-HHHH-HHHHHHHhcceEeccCCc-
Q 001646 214 -LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASS--GQL-ELLN-DWKKVFNRATVVVFPDYV- 287 (1038)
Q Consensus 214 -~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~--~~d-~lIs-~~~~~~~~a~~vvfps~~- 287 (1038)
.+||+||+|.... +..+.++. +..++|+|+|+|+..... ..+... ... .... .....+..++.+++.+..
T Consensus 99 ~~~~Diih~h~~~~-~~~~~~~~-~~~~~p~v~t~h~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~ 174 (405)
T TIGR03449 99 PGYYDLIHSHYWLS-GQVGWLLR-DRWGVPLVHTAHTLAAVK--NAALADGDTPEPEARRIGEQQLVDNADRLIANTDEE 174 (405)
T ss_pred CCCCCeEEechHHH-HHHHHHHH-HhcCCCEEEeccchHHHH--HHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHH
Confidence 3799999998655 34444443 356789999999732111 111100 000 0111 112356677777766544
Q ss_pred ccc--ccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchh
Q 001646 288 LPM--MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS 365 (1038)
Q Consensus 288 l~v--iyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~ 365 (1038)
... ...+.+.+++.+||+ |+|...+.+ ..+...+.++++++++++|+++| ++.+. ||++.+++|+..+.+
T Consensus 175 ~~~~~~~~~~~~~ki~vi~n-gvd~~~~~~---~~~~~~~~~~~~~~~~~~i~~~G-~l~~~---K~~~~li~a~~~l~~ 246 (405)
T TIGR03449 175 ARDLVRHYDADPDRIDVVAP-GADLERFRP---GDRATERARLGLPLDTKVVAFVG-RIQPL---KAPDVLLRAVAELLD 246 (405)
T ss_pred HHHHHHHcCCChhhEEEECC-CcCHHHcCC---CcHHHHHHhcCCCCCCcEEEEec-CCCcc---cCHHHHHHHHHHHHh
Confidence 111 122455678899995 888744432 23445677888888889999999 77777 899999999999987
Q ss_pred hcccCCCCCCCEEEEEEeCCCC-C-chHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHH
Q 001646 366 EVSVENESNSPIKVMILSGDST-S-NYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (1038)
Q Consensus 366 k~p~~~~~~~~vkLVIVGG~~~-e-~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlv 441 (1038)
+.|+ .+++|+|+||... . .+.+.++++++++++.+ +|.|+|+. +++.++|+.||++|+||..| |||++
T Consensus 247 ~~~~-----~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~-~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E--~~g~~ 318 (405)
T TIGR03449 247 RDPD-----RNLRVIVVGGPSGSGLATPDALIELAAELGIAD-RVRFLPPRPPEELVHVYRAADVVAVPSYNE--SFGLV 318 (405)
T ss_pred hCCC-----cceEEEEEeCCCCCcchHHHHHHHHHHHcCCCc-eEEECCCCCHHHHHHHHHhCCEEEECCCCC--CcChH
Confidence 6553 2489999995432 2 45678999999999998 89999976 78999999999999999988 79999
Q ss_pred HHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHH
Q 001646 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGY 521 (1038)
Q Consensus 442 LLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y 521 (1038)
++|||++|+|||+++.||.+|++.++.+|++++++|+++++++|.+++++ ++.+++|+.++++.+++|+|+.++++|
T Consensus 319 ~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~---~~~~~~~~~~~~~~~~~fsw~~~~~~~ 395 (405)
T TIGR03449 319 AMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDD---PRTRIRMGAAAVEHAAGFSWAATADGL 395 (405)
T ss_pred HHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 899999999999999889999999999
Q ss_pred HHHHHHhhc
Q 001646 522 AMLLENVLK 530 (1038)
Q Consensus 522 ~~Lye~vLk 530 (1038)
.++|++++.
T Consensus 396 ~~~y~~~~~ 404 (405)
T TIGR03449 396 LSSYRDALA 404 (405)
T ss_pred HHHHHHHhh
Confidence 999998763
No 3
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.8e-33 Score=313.61 Aligned_cols=349 Identities=14% Similarity=0.163 Sum_probs=256.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEc---------------ccchhHHHH
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAIL---------------QTGREKASF 210 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l---------------~~~rkl~~l 210 (1038)
||+++..+ ..||.+.++.++++.|.+.||+|+|++..... .......++.+..+ .....+.+.
T Consensus 2 ki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (371)
T cd04962 2 KIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPF-RLDEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAEV 79 (371)
T ss_pred ceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCc-chhhhccCeEEEEecccccchhhcchhHHHHHHHHHHH
Confidence 67777653 57999999999999999999999999875421 11111111111111 011334455
Q ss_pred hhhcCCcEEEEcCCchhHHHHHHHh--CCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc
Q 001646 211 VNWLNYDGILVNSLEAKVVISNIMQ--EPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL 288 (1038)
Q Consensus 211 I~~~kpDIVhvhs~~~~~~la~La~--~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l 288 (1038)
++..+||+||+|..........+.. .+..++|+|+++|+...... .. .. .........+..++.+++.+...
T Consensus 80 i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--~~-~~---~~~~~~~~~~~~~d~ii~~s~~~ 153 (371)
T cd04962 80 AKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLV--GQ-DP---SFQPATRFSIEKSDGVTAVSESL 153 (371)
T ss_pred HhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccc--cc-cc---cchHHHHHHHhhCCEEEEcCHHH
Confidence 6678999999997654212222221 11237999999997432210 00 00 00111223455677666655442
Q ss_pred c-cccc-cCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhh
Q 001646 289 P-MMYS-AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE 366 (1038)
Q Consensus 289 ~-viyn-~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k 366 (1038)
. .+.. .....++.+||+ ++|...+. +......+.+++.++++++++++| ++.+. ||++.+++|+..+.++
T Consensus 154 ~~~~~~~~~~~~~i~vi~n-~~~~~~~~---~~~~~~~~~~~~~~~~~~~il~~g-~l~~~---K~~~~li~a~~~l~~~ 225 (371)
T cd04962 154 RQETYELFDITKEIEVIPN-FVDEDRFR---PKPDEALKRRLGAPEGEKVLIHIS-NFRPV---KRIDDVIRIFAKVRKE 225 (371)
T ss_pred HHHHHHhcCCcCCEEEecC-CcCHhhcC---CCchHHHHHhcCCCCCCeEEEEec-ccccc---cCHHHHHHHHHHHHhc
Confidence 1 1111 123467888985 67763322 222344567788888899999999 77777 8999999999998765
Q ss_pred cccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHH
Q 001646 367 VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKA 445 (1038)
Q Consensus 367 ~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEA 445 (1038)
++ ++|+|+| |+.. +.++++++++++.+ +|.|+|+.+++.++|+.||++|+||..| |||++++||
T Consensus 226 -~~-------~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~d~~v~ps~~E--~~~~~~~EA 290 (371)
T cd04962 226 -VP-------ARLLLVGDGPER----SPAERLARELGLQD-DVLFLGKQDHVEELLSIADLFLLPSEKE--SFGLAALEA 290 (371)
T ss_pred -CC-------ceEEEEcCCcCH----HHHHHHHHHcCCCc-eEEEecCcccHHHHHHhcCEEEeCCCcC--CCccHHHHH
Confidence 33 7999999 7664 77888999999987 8999999999999999999999999988 799999999
Q ss_pred HHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHH
Q 001646 446 LCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAML 524 (1038)
Q Consensus 446 MA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~L 524 (1038)
|++|+|||+|+.||.+|++.++.+|++++++|+++++++|..++++ ++.+.+|+.++++.+ ++|+++.++++|.++
T Consensus 291 ma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 367 (371)
T cd04962 291 MACGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLED---DELWQEFSRAARNRAAERFDSERIVPQYEAL 367 (371)
T ss_pred HHcCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999996 779999999999999
Q ss_pred HHHh
Q 001646 525 LENV 528 (1038)
Q Consensus 525 ye~v 528 (1038)
|+++
T Consensus 368 y~~~ 371 (371)
T cd04962 368 YRRL 371 (371)
T ss_pred HHhC
Confidence 9863
No 4
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.2e-32 Score=335.15 Aligned_cols=358 Identities=11% Similarity=0.103 Sum_probs=259.3
Q ss_pred ccCCCCCc-eEEEEcCCCCCChHHHHHHHHHHHHHHcCC------------eEEEEEc----CCC--cchhhhhhcCceE
Q 001646 138 HRFGYRKP-QLALVFPDLLIDPQQLQMVTIAIALREIGY------------AIQVYSL----EDG--RAHEVWRNIGVPV 198 (1038)
Q Consensus 138 ~r~~~R~p-rIaiV~~~L~iGGae~~v~~LAkaL~k~G~------------eV~V~t~----~~g--~~~~~~e~~gI~v 198 (1038)
..-+.++. ||++|++++..||+|+++.+++.+|...++ .+.|++. .++ .........|+++
T Consensus 274 ~~~~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v 353 (694)
T PRK15179 274 DAGPESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPV 353 (694)
T ss_pred cCCCCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeE
Confidence 34477887 999999999999999999999999999965 3444443 222 2334455677776
Q ss_pred EEcccc------------------------------hhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEE-EE
Q 001646 199 AILQTG------------------------------REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVW-TI 247 (1038)
Q Consensus 199 ~~l~~~------------------------------rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~-ti 247 (1038)
..+... ..+.++++..+|||||+|.... .+++.++.. ..++|+|+ +.
T Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a-~~lg~lAa~-~~gvPvIv~t~ 431 (694)
T PRK15179 354 SVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGS-IFACALAAL-LAGVPRIVLSV 431 (694)
T ss_pred EEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcH-HHHHHHHHH-HcCCCEEEEEe
Confidence 655332 2334457778999999998877 355555533 55688876 55
Q ss_pred eCchhHHhHHHhhhhchhHHHHHHHHHHHhcc-eEeccCCc-c--ccc-cccCCCCCEEEcCCCCCCccccccccchhhH
Q 001646 248 HEGTLATRARNYASSGQLELLNDWKKVFNRAT-VVVFPDYV-L--PMM-YSAFDAGNYYVIPGSPAKAWEADTNMDLYND 322 (1038)
Q Consensus 248 Hg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~-~vvfps~~-l--~vi-yn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~ 322 (1038)
|+.........+.. .... .+.. +...+ .+++.++. . .+. ..+++.+++.+||+ |+|...+...+.. .
T Consensus 432 h~~~~~~~~~~~~~--~~~~--l~~~-l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~N-GVd~~~f~~~~~~--~ 503 (694)
T PRK15179 432 RTMPPVDRPDRYRV--EYDI--IYSE-LLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYN-GLAPLKSVQDDAC--T 503 (694)
T ss_pred CCCccccchhHHHH--HHHH--HHHH-HHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECC-CcCHHhcCCCchh--h
Confidence 75221111111100 0000 1111 11111 22222222 1 111 22466678999995 8887544321111 1
Q ss_pred HHHH--hhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHH
Q 001646 323 TVRV--KMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAH 399 (1038)
Q Consensus 323 ~lRe--klgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~ 399 (1038)
..+. ....+.+.++|+++| |+.+. ||++.+|+|+..+.++.|+ ++|+|+| |+.. +.++++++
T Consensus 504 ~~~~~~~~~~~~~~~vIg~VG-RL~~~---KG~~~LI~A~a~l~~~~p~-------~~LvIvG~G~~~----~~L~~l~~ 568 (694)
T PRK15179 504 AMMAQFDARTSDARFTVGTVM-RVDDN---KRPFLWVEAAQRFAASHPK-------VRFIMVGGGPLL----ESVREFAQ 568 (694)
T ss_pred HHHHhhccccCCCCeEEEEEE-eCCcc---CCHHHHHHHHHHHHHHCcC-------eEEEEEccCcch----HHHHHHHH
Confidence 1111 122345677899999 88887 9999999999999888887 9999999 7765 88999999
Q ss_pred HcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCC--
Q 001646 400 NLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKEN-- 477 (1038)
Q Consensus 400 qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D-- 477 (1038)
++++.+ +|.|+|+.+++..+|+.+|++|+||.+| |||++++|||+||+|||+|++||++|+|.++.+|++++++|
T Consensus 569 ~lgL~~-~V~flG~~~dv~~ll~aaDv~VlpS~~E--gfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~ 645 (694)
T PRK15179 569 RLGMGE-RILFTGLSRRVGYWLTQFNAFLLLSRFE--GLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVT 645 (694)
T ss_pred HcCCCC-cEEEcCCcchHHHHHHhcCEEEeccccc--cchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCCCC
Confidence 999998 9999999999999999999999999998 79999999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Q 001646 478 IKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (1038)
Q Consensus 478 ~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye 526 (1038)
+++++++|.+++.+ ......+++++++.+ ++|+++.++++|.++|+
T Consensus 646 ~~~La~aL~~ll~~---l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 646 APDVAEALARIHDM---CAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred hHHHHHHHHHHHhC---hhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 46899999999887 555667889999999 67999999999999985
No 5
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=9.3e-33 Score=322.79 Aligned_cols=353 Identities=15% Similarity=0.122 Sum_probs=250.5
Q ss_pred CCCCChHHHHHHHHHHHHHHcCC--eEEEEEcCCC------cchhhhh--hcCceEEEcccc------------------
Q 001646 153 DLLIDPQQLQMVTIAIALREIGY--AIQVYSLEDG------RAHEVWR--NIGVPVAILQTG------------------ 204 (1038)
Q Consensus 153 ~L~iGGae~~v~~LAkaL~k~G~--eV~V~t~~~g------~~~~~~e--~~gI~v~~l~~~------------------ 204 (1038)
+...||++.++.+|++.|.++|| +|+|+|.... ......+ ..|+++..++..
T Consensus 22 ~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~ 101 (439)
T TIGR02472 22 DADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELA 101 (439)
T ss_pred CCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHH
Confidence 45689999999999999999997 9999996321 1111111 345666555431
Q ss_pred hhHHHHhhh--cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhh---------hh--chhHHHHHH
Q 001646 205 REKASFVNW--LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYA---------SS--GQLELLNDW 271 (1038)
Q Consensus 205 rkl~~lI~~--~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~---------~~--~~d~lIs~~ 271 (1038)
..+...++. .+||+||+|+... +.++.++. +..++|+|+|.|+.....+ ..+. .. .....+...
T Consensus 102 ~~l~~~~~~~~~~~DvIH~h~~~~-~~~~~~~~-~~~~~p~V~t~H~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (439)
T TIGR02472 102 DNLLQHLRQQGHLPDLIHAHYADA-GYVGARLS-RLLGVPLIFTGHSLGREKR-RRLLAAGLKPQQIEKQYNISRRIEAE 178 (439)
T ss_pred HHHHHHHHHcCCCCCEEEEcchhH-HHHHHHHH-HHhCCCEEEecccccchhh-hhcccCCCChhhhhhhcchHHHHHHH
Confidence 123333443 2699999998765 45555553 3567899999997221110 0000 00 000111123
Q ss_pred HHHHHhcceEeccCCc-cc---cccccCCCCCEEEcCCCCCCccccccccchh-hHH---HHHhhCCCCCCEEEEEEecc
Q 001646 272 KKVFNRATVVVFPDYV-LP---MMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-NDT---VRVKMGFKPDDLVIAIVGTQ 343 (1038)
Q Consensus 272 ~~~~~~a~~vvfps~~-l~---viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~-k~~---lReklgi~~d~~vIL~VGsr 343 (1038)
+..+..++.++..+.. .. ..+.+++.+++.+||+ |+|...|.+..... ... .+..++..+++++|+++| +
T Consensus 179 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpn-Gvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG-r 256 (439)
T TIGR02472 179 EETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPP-GVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAIS-R 256 (439)
T ss_pred HHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECC-CcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEc-C
Confidence 3466777776665433 11 1123567789999995 89886655432221 111 223455667778999999 7
Q ss_pred cccccccccHHHHHHHHHHchhhcccCCCCCCCEEEE-EEe-CCCCCc-------hHHHHHHHHHHcCCCCceEEEccCh
Q 001646 344 FMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVM-ILS-GDSTSN-------YSVVIEAIAHNLHYPLGVVKHMAAE 414 (1038)
Q Consensus 344 l~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLV-IVG-G~~~e~-------Y~~~LeeLa~qLgL~d~~V~flG~~ 414 (1038)
+.+. ||++.+|+|++.+...... .+++ |+| |+.... +.+.++.+++++++.+ +|.|+|+.
T Consensus 257 l~~~---Kg~~~li~A~~~l~~~~~~-------~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~-~V~f~g~~ 325 (439)
T TIGR02472 257 PDRR---KNIPSLVEAYGRSPKLQEM-------ANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYG-KVAYPKHH 325 (439)
T ss_pred Cccc---CCHHHHHHHHHhChhhhhh-------ccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCc-eEEecCCC
Confidence 8887 9999999999875321111 2333 557 554322 2344567788999998 99999964
Q ss_pred --hhHHHHHHhc----CEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHH
Q 001646 415 --GDVDSVLNTA----DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQV 488 (1038)
Q Consensus 415 --edV~~lLaaA----DIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~L 488 (1038)
+++.++|+.| |+||+||..| |||++++||||||+|||+|+.||++|+|.++.+|++++++|+++|+++|.++
T Consensus 326 ~~~~~~~~~~~a~~~~Dv~v~pS~~E--~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~l 403 (439)
T TIGR02472 326 RPDDVPELYRLAARSRGIFVNPALTE--PFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDA 403 (439)
T ss_pred CHHHHHHHHHHHhhcCCEEecccccC--CcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHH
Confidence 8899999987 9999999998 7999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Q 001646 489 ITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (1038)
Q Consensus 489 LsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye 526 (1038)
++| ++.+++|+++|++.+ ++|+|+.++++|.++++
T Consensus 404 l~~---~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 404 LSD---SSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999 999999999999998 67999999999998863
No 6
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.7e-32 Score=322.79 Aligned_cols=353 Identities=14% Similarity=0.161 Sum_probs=257.1
Q ss_pred CCCceEEEEcC---CCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEE---------------Eccc
Q 001646 142 YRKPQLALVFP---DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVA---------------ILQT 203 (1038)
Q Consensus 142 ~R~prIaiV~~---~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~---------------~l~~ 203 (1038)
.+|.||+++.. ....||.+..+.++++.|.+.||+|+|++...+... .. .++.+. .+..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~-~~--~g~~v~~~~~~~~~~~~~~~~~~~~ 132 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ-EF--HGAKVIGSWSFPCPFYQKVPLSLAL 132 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc-cc--cCceeeccCCcCCccCCCceeeccC
Confidence 67899998854 335799999999999999999999999997653211 11 111111 0111
Q ss_pred chhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhc-hhHHHHHHHHHHHhcceEe
Q 001646 204 GREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSG-QLELLNDWKKVFNRATVVV 282 (1038)
Q Consensus 204 ~rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~-~d~lIs~~~~~~~~a~~vv 282 (1038)
...+.+.++..+||+||+|++........++. +..++|+|++.|+.... ....+.... ...+....+..+..++.++
T Consensus 133 ~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~a-k~~~ip~V~~~h~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~ad~ii 210 (465)
T PLN02871 133 SPRIISEVARFKPDLIHASSPGIMVFGALFYA-KLLCVPLVMSYHTHVPV-YIPRYTFSWLVKPMWDIIRFLHRAADLTL 210 (465)
T ss_pred CHHHHHHHHhCCCCEEEECCCchhHHHHHHHH-HHhCCCEEEEEecCchh-hhhcccchhhHHHHHHHHHHHHhhCCEEE
Confidence 12455667778999999998754322232232 35679999999973211 111111000 0111112233556777777
Q ss_pred ccCCccc--ccccc-CCCCCEEEcCCCCCCccccccccchhhHHHHHhhC-CCCCCEEEEEEecccccccccccHHHHHH
Q 001646 283 FPDYVLP--MMYSA-FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMG-FKPDDLVIAIVGTQFMYRGLWLEHALILR 358 (1038)
Q Consensus 283 fps~~l~--viyn~-vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklg-i~~d~~vIL~VGsrl~~~KGiKgldlLLe 358 (1038)
+.+.... +...+ .+..++.+||+ |+|...+.+... ....+.++. ..+++++|+++| ++.+. ||++.+++
T Consensus 211 ~~S~~~~~~l~~~~~~~~~kv~vi~n-Gvd~~~f~p~~~--~~~~~~~~~~~~~~~~~i~~vG-rl~~~---K~~~~li~ 283 (465)
T PLN02871 211 VTSPALGKELEAAGVTAANRIRVWNK-GVDSESFHPRFR--SEEMRARLSGGEPEKPLIVYVG-RLGAE---KNLDFLKR 283 (465)
T ss_pred ECCHHHHHHHHHcCCCCcCeEEEeCC-ccCccccCCccc--cHHHHHHhcCCCCCCeEEEEeC-CCchh---hhHHHHHH
Confidence 7665421 11222 33567888884 888755433221 233454443 345678999999 77777 88999999
Q ss_pred HHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCc
Q 001646 359 ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEE 435 (1038)
Q Consensus 359 Al~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~Ee 435 (1038)
+++.+ ++ ++|+|+| |+.. +.++++++. . +|.|+|++ +++..+|+.||++|+||..|
T Consensus 284 a~~~~----~~-------~~l~ivG~G~~~----~~l~~~~~~----~-~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E- 342 (465)
T PLN02871 284 VMERL----PG-------ARLAFVGDGPYR----EELEKMFAG----T-PTVFTGMLQGDELSQAYASGDVFVMPSESE- 342 (465)
T ss_pred HHHhC----CC-------cEEEEEeCChHH----HHHHHHhcc----C-CeEEeccCCHHHHHHHHHHCCEEEECCccc-
Confidence 98775 34 8999999 7654 677777662 2 59999988 78999999999999999988
Q ss_pred CCcCHHHHHHHHcCCCEEEcCCccccccccc---CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh
Q 001646 436 QTFPEILVKALCFRKPIIAPDLSNIRKYVDD---RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNL 512 (1038)
Q Consensus 436 qGFPlvLLEAMA~GkPVIaTdvgGi~EiV~d---G~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~F 512 (1038)
|||++++||||||+|||+++.||+.|+|.+ +.+|++++++|+++++++|.++++| ++.+++|++++++.+++|
T Consensus 343 -~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~f 418 (465)
T PLN02871 343 -TLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD---PELRERMGAAAREEVEKW 418 (465)
T ss_pred -ccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999998 9999999999999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHhhcC
Q 001646 513 MALETIEGYAM-LLENVLKL 531 (1038)
Q Consensus 513 s~e~ia~~Y~~-Lye~vLk~ 531 (1038)
+|+.+++++.+ .|+.++..
T Consensus 419 sw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 419 DWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 69888754
No 7
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=2.3e-32 Score=314.59 Aligned_cols=345 Identities=12% Similarity=0.123 Sum_probs=253.7
Q ss_pred eEEEEcCCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc-hhhhhhcCceEEEcccc---------------hhH
Q 001646 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA-HEVWRNIGVPVAILQTG---------------REK 207 (1038)
Q Consensus 146 rIaiV~~~L--~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~-~~~~e~~gI~v~~l~~~---------------rkl 207 (1038)
||++|.+.. ..||+++.+..+++.|.++||+|.|++...+.. .......++++..++.. ..+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l 80 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLL 80 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHH
Confidence 466666643 469999999999999999999999999754321 11222334444433321 223
Q ss_pred HHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCch-hHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCC
Q 001646 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT-LATRARNYASSGQLELLNDWKKVFNRATVVVFPDY 286 (1038)
Q Consensus 208 ~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~-L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~ 286 (1038)
...+...+||+||+|+.........+...+..++|+|++.|+.. ........ ... ..+..+..++.+++.+.
T Consensus 81 ~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~----~~~---~~~~~~~~~d~ii~~s~ 153 (398)
T cd03796 81 RNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIH----TNK---LLRFSLADVDHVICVSH 153 (398)
T ss_pred HHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHH----hhH---HHHHhhccCCEEEEecH
Confidence 44556679999999987653222232323466799999999721 11000000 001 11223456676666655
Q ss_pred ccc---cccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHc
Q 001646 287 VLP---MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPL 363 (1038)
Q Consensus 287 ~l~---viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L 363 (1038)
... .....++.+++.+||+ |+|...+.+... ..+++.++++++| ++.++ ||++.+++|+..+
T Consensus 154 ~~~~~~~~~~~~~~~k~~vi~n-gvd~~~f~~~~~----------~~~~~~~~i~~~g-rl~~~---Kg~~~li~a~~~l 218 (398)
T cd03796 154 TSKENTVLRASLDPERVSVIPN-AVDSSDFTPDPS----------KRDNDKITIVVIS-RLVYR---KGIDLLVGIIPEI 218 (398)
T ss_pred hHhhHHHHHhCCChhhEEEEcC-ccCHHHcCCCcc----------cCCCCceEEEEEe-ccchh---cCHHHHHHHHHHH
Confidence 422 2334566678899994 788743332111 1345678999999 88887 9999999999999
Q ss_pred hhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCH
Q 001646 364 FSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPE 440 (1038)
Q Consensus 364 ~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPl 440 (1038)
.++.++ ++|+|+| |+.. +.++++++++++.+ +|.|+|+. +++..+|++||++|+||..| |||+
T Consensus 219 ~~~~~~-------~~l~i~G~g~~~----~~l~~~~~~~~l~~-~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E--~~g~ 284 (398)
T cd03796 219 CKKHPN-------VRFIIGGDGPKR----ILLEEMREKYNLQD-RVELLGAVPHERVRDVLVQGHIFLNTSLTE--AFCI 284 (398)
T ss_pred HhhCCC-------EEEEEEeCCchH----HHHHHHHHHhCCCC-eEEEeCCCCHHHHHHHHHhCCEEEeCChhh--ccCH
Confidence 887777 9999999 7654 78899999999998 99999986 79999999999999999988 7999
Q ss_pred HHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHH
Q 001646 441 ILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIE 519 (1038)
Q Consensus 441 vLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~ 519 (1038)
+++||||||+|||+|+.||++|++.++. +++++ .|+++++++|.+++++ +.....++.++++.+ ++|+|+.+++
T Consensus 285 ~~~EAma~G~PVI~s~~gg~~e~i~~~~-~~~~~-~~~~~l~~~l~~~l~~---~~~~~~~~~~~~~~~~~~fs~~~~~~ 359 (398)
T cd03796 285 AIVEAASCGLLVVSTRVGGIPEVLPPDM-ILLAE-PDVESIVRKLEEAISI---LRTGKHDPWSFHNRVKKMYSWEDVAK 359 (398)
T ss_pred HHHHHHHcCCCEEECCCCCchhheeCCc-eeecC-CCHHHHHHHHHHHHhC---hhhhhhHHHHHHHHHHhhCCHHHHHH
Confidence 9999999999999999999999998764 45554 4899999999999998 666667888888877 6699999999
Q ss_pred HHHHHHHHhhcC
Q 001646 520 GYAMLLENVLKL 531 (1038)
Q Consensus 520 ~Y~~Lye~vLk~ 531 (1038)
+|.++|+.++..
T Consensus 360 ~~~~~y~~l~~~ 371 (398)
T cd03796 360 RTEKVYDRILQT 371 (398)
T ss_pred HHHHHHHHHhcC
Confidence 999999998763
No 8
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=6e-32 Score=301.22 Aligned_cols=332 Identities=18% Similarity=0.139 Sum_probs=252.1
Q ss_pred EcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccc-----------hhHHHHhhhcCCcE
Q 001646 150 VFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG-----------REKASFVNWLNYDG 218 (1038)
Q Consensus 150 V~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~-----------rkl~~lI~~~kpDI 218 (1038)
|++.+..||+++++..+++.|.++||+|.+++... +.....+..++.+..+... ..+...+...+||+
T Consensus 3 ~~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di 81 (355)
T cd03819 3 VLPALESGGVERGTLELARALVERGHRSLVASAGG-RLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDI 81 (355)
T ss_pred cchhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCC-chHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCE
Confidence 56778889999999999999999999999998643 3333344455554433221 22344566689999
Q ss_pred EEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc-ccc--cccC
Q 001646 219 ILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-PMM--YSAF 295 (1038)
Q Consensus 219 Vhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l-~vi--yn~v 295 (1038)
||+|+... .....++. +..++|+|+++|+...... .+...+..++.+++.+... ..+ ..++
T Consensus 82 i~~~~~~~-~~~~~~~~-~~~~~~~i~~~h~~~~~~~--------------~~~~~~~~~~~vi~~s~~~~~~~~~~~~~ 145 (355)
T cd03819 82 VHARSRAP-AWSAYLAA-RRTRPPFVTTVHGFYSVNF--------------RYNAIMARGDRVIAVSNFIADHIRENYGV 145 (355)
T ss_pred EEECCCch-hHHHHHHH-HhcCCCEEEEeCCchhhHH--------------HHHHHHHhcCEEEEeCHHHHHHHHHhcCC
Confidence 99998765 24444443 3557999999997432210 1122334555555554431 111 2345
Q ss_pred CCCCEEEcCCCCCCccccccccchh--hHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCC
Q 001646 296 DAGNYYVIPGSPAKAWEADTNMDLY--NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENES 373 (1038)
Q Consensus 296 d~~ki~VIPgsgVD~~~f~~~~~~~--k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~ 373 (1038)
+.+++.+||+ |+|...+....... ....+++++.+++.++++++| ++... ||++.+++|+..+.++.++
T Consensus 146 ~~~k~~~i~n-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G-r~~~~---Kg~~~li~~~~~l~~~~~~---- 216 (355)
T cd03819 146 DPDRIRVIPR-GVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPG-RLTRW---KGQEVFIEALARLKKDDPD---- 216 (355)
T ss_pred ChhhEEEecC-CccccccCccccchHHHHHHHHHcCCCCCceEEEEee-ccccc---cCHHHHHHHHHHHHhcCCC----
Confidence 5678889985 77775443322211 223577788888889999999 77776 9999999999999887666
Q ss_pred CCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcc-cCCcCCcCHHHHHHHHcCCC
Q 001646 374 NSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGS-FLEEQTFPEILVKALCFRKP 451 (1038)
Q Consensus 374 ~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS-~~EeqGFPlvLLEAMA~GkP 451 (1038)
++|+|+| |+..+.+.+.+++.+.++++.+ +|.|+|+.+++.++|++||++|+|| ..| |||++++||||||+|
T Consensus 217 ---~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~l~~ad~~i~ps~~~e--~~~~~l~EA~a~G~P 290 (355)
T cd03819 217 ---VHLLIVGDAQGRRFYYAELLELIKRLGLQD-RVTFVGHCSDMPAAYALADIVVSASTEPE--AFGRTAVEAQAMGRP 290 (355)
T ss_pred ---eEEEEEECCcccchHHHHHHHHHHHcCCcc-eEEEcCCcccHHHHHHhCCEEEecCCCCC--CCchHHHHHHhcCCC
Confidence 9999999 7666667777788889899987 8999999999999999999999999 666 899999999999999
Q ss_pred EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHH-HhhCHHH
Q 001646 452 IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI-TNGKISPFARNIASIGRRSV-KNLMALE 516 (1038)
Q Consensus 452 VIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LL-sDg~l~elr~~mg~~are~a-k~Fs~e~ 516 (1038)
||+++.+|..|++.++.+|++++++|+++++++|..++ .+ ++.+.+++++|++.+ ++|+++.
T Consensus 291 vI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 291 VIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLL---PEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred EEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999998999999999999999997555 47 888889999999999 5688875
No 9
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=5.7e-32 Score=312.15 Aligned_cols=362 Identities=12% Similarity=0.082 Sum_probs=260.2
Q ss_pred ceEEEEcCCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCC-cc-----------hhhhhhcCceEEEcccc------
Q 001646 145 PQLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RA-----------HEVWRNIGVPVAILQTG------ 204 (1038)
Q Consensus 145 prIaiV~~~L--~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g-~~-----------~~~~e~~gI~v~~l~~~------ 204 (1038)
+||++|.... ..||.+.++..+++.|.++||+|+|+|..+. +. .......++++..++..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 3688887643 3589999999999999999999999997531 10 00111235555544321
Q ss_pred --hhHH-----------HHhh--hcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHH-hh-hhchhHH
Q 001646 205 --REKA-----------SFVN--WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARN-YA-SSGQLEL 267 (1038)
Q Consensus 205 --rkl~-----------~lI~--~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek-~~-~~~~d~l 267 (1038)
+.+. .+++ ..+||+||+|.+........+...+..++|+|+++|+......... .. ......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~ 160 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYEVDAAFGLGLLKGGKVARL 160 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCCHHHHHHhCCccCcHHHHH
Confidence 0110 0111 1589999999876532333322234567899999997221111110 00 0001111
Q ss_pred HH-HHHHHHHhcceEeccCCccc--cccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEeccc
Q 001646 268 LN-DWKKVFNRATVVVFPDYVLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQF 344 (1038)
Q Consensus 268 Is-~~~~~~~~a~~vvfps~~l~--viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl 344 (1038)
+. ..+..+..++.+++.+.... +...+++..++.+||+ |+|...+.+........+++++++++++++++|+| ++
T Consensus 161 ~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~n-gvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G-~l 238 (412)
T PRK10307 161 ATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPN-WSEVARFQPVADADVDALRAQLGLPDGKKIVLYSG-NI 238 (412)
T ss_pred HHHHHHHHHhhCCEEEecCHHHHHHHHHcCCCcccEEEECC-CcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcC-cc
Confidence 11 22335667887777665521 2223456678999995 88875544332222345788899988889999999 77
Q ss_pred ccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHH
Q 001646 345 MYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVL 421 (1038)
Q Consensus 345 ~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lL 421 (1038)
.+. ||++.+++|++.+. +.++ ++|+|+| |+.. +.++++++++++.+ |.|+|++ +++.++|
T Consensus 239 ~~~---kg~~~li~a~~~l~-~~~~-------~~l~ivG~g~~~----~~l~~~~~~~~l~~--v~f~G~~~~~~~~~~~ 301 (412)
T PRK10307 239 GEK---QGLELVIDAARRLR-DRPD-------LIFVICGQGGGK----ARLEKMAQCRGLPN--VHFLPLQPYDRLPALL 301 (412)
T ss_pred ccc---cCHHHHHHHHHHhc-cCCC-------eEEEEECCChhH----HHHHHHHHHcCCCc--eEEeCCCCHHHHHHHH
Confidence 776 89999999999875 3455 9999999 8765 78899999999865 9999976 7899999
Q ss_pred HhcCEEEEcccCCcCC--cCHHHHHHHHcCCCEEEcCCcc--cccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHH
Q 001646 422 NTADVVIYGSFLEEQT--FPEILVKALCFRKPIIAPDLSN--IRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPF 497 (1038)
Q Consensus 422 aaADIfVlPS~~EeqG--FPlvLLEAMA~GkPVIaTdvgG--i~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~el 497 (1038)
++||++|+||..|..+ +|.+++||||||+|||+|+.+| +.+++. .+|++++++|+++|+++|.++++| +++
T Consensus 302 ~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~---~~~ 376 (412)
T PRK10307 302 KMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQ---ALL 376 (412)
T ss_pred HhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhC---HHH
Confidence 9999999999887311 6889999999999999999877 457776 489999999999999999999999 999
Q ss_pred HHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHhhc
Q 001646 498 ARNIASIGRRSV-KNLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 498 r~~mg~~are~a-k~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
+++|+++|++.+ ++|+|+.++++|.++|++++.
T Consensus 377 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 377 RPKLGTVAREYAERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 999999999999 569999999999999998764
No 10
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=8.6e-32 Score=295.07 Aligned_cols=348 Identities=20% Similarity=0.312 Sum_probs=262.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc-chhhhhhcCceEEEcccc---------hhHHHHhhhcC
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR-AHEVWRNIGVPVAILQTG---------REKASFVNWLN 215 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~-~~~~~e~~gI~v~~l~~~---------rkl~~lI~~~k 215 (1038)
||++|++.+..||++.++..+++.|.+.|++|.+++..... ........++++..+... ..+.+.++..+
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLR 80 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999999999875532 233334456665544322 23455567789
Q ss_pred CcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHH--hHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc--ccc
Q 001646 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLAT--RARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMM 291 (1038)
Q Consensus 216 pDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~--~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l--~vi 291 (1038)
||+||++.... ..+..+......++|++++.|+..... +.... ...........++.+++.+... ...
T Consensus 81 ~div~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~s~~~~~~~~ 152 (365)
T cd03807 81 PDVVHTWMYHA-DLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRL-------VARLRRLLSSFIPLIVANSAAAAEYHQ 152 (365)
T ss_pred CCEEEeccccc-cHHHHHHHHhcCCCcEEEEecCCcccccchhHhH-------HHHHHHHhccccCeEEeccHHHHHHHH
Confidence 99999987665 244444433236789999999833221 11100 0011111223344433333331 111
Q ss_pred cccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCC
Q 001646 292 YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVEN 371 (1038)
Q Consensus 292 yn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~ 371 (1038)
..+++..++.++++ |+|...+..... .+...+++++++++.++++++| ++.+. ||++.+++|+..+.++.++
T Consensus 153 ~~~~~~~~~~vi~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~G-~~~~~---K~~~~li~a~~~l~~~~~~-- 224 (365)
T cd03807 153 AIGYPPKKIVVIPN-GVDTERFSPDLD-ARARLREELGLPEDTFLIGIVA-RLHPQ---KDHATLLRAAALLLKKFPN-- 224 (365)
T ss_pred HcCCChhheeEeCC-CcCHHhcCCccc-chHHHHHhcCCCCCCeEEEEec-ccchh---cCHHHHHHHHHHHHHhCCC--
Confidence 22556678888885 777643332221 2445667888988899999999 77776 8999999999999887777
Q ss_pred CCCCCEEEEEEe-CCCCCchHHHHHHHHH-HcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcC
Q 001646 372 ESNSPIKVMILS-GDSTSNYSVVIEAIAH-NLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFR 449 (1038)
Q Consensus 372 ~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~-qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~G 449 (1038)
++|+|+| |+.. ..++.... ++++.+ +|.++|..+++..+|+.||++|+||..| |+|++++|||+||
T Consensus 225 -----~~l~i~G~~~~~----~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ps~~e--~~~~~~~Ea~a~g 292 (365)
T cd03807 225 -----ARLLLVGDGPDR----ANLELLALKELGLED-KVILLGERSDVPALLNALDVFVLSSLSE--GFPNVLLEAMACG 292 (365)
T ss_pred -----eEEEEecCCcch----hHHHHHHHHhcCCCc-eEEEccccccHHHHHHhCCEEEeCCccc--cCCcHHHHHHhcC
Confidence 9999999 6654 45555565 788888 8999999999999999999999999997 7999999999999
Q ss_pred CCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Q 001646 450 KPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (1038)
Q Consensus 450 kPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye 526 (1038)
+|||+++.++..|++.+ +|++++++|+++++++|..++++ ++.+.++++++++.+ ++|+|+.++++|.++|+
T Consensus 293 ~PvI~~~~~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 293 LPVVATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALLAD---PALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred CCEEEcCCCChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999987 89999999999999999999999 999999999999999 56999999999999874
No 11
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=1.5e-31 Score=304.30 Aligned_cols=346 Identities=14% Similarity=0.190 Sum_probs=252.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch-h---hhhh-c-CceEEEcccch--hH----HHH---
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH-E---VWRN-I-GVPVAILQTGR--EK----ASF--- 210 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~-~---~~e~-~-gI~v~~l~~~r--kl----~~l--- 210 (1038)
||++|.+.+..||.+.++.++++.|.+.||+|++++..+.+.. . .... . +.++ .++... .+ ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 79 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADI-ELSEEEKEIYLEWNEENAER 79 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCC-CCCHHHHHHHHHHHHHHhcc
Confidence 5889999999999999999999999999999999988664311 1 0001 1 3222 122111 00 111
Q ss_pred -hhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccc
Q 001646 211 -VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP 289 (1038)
Q Consensus 211 -I~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~ 289 (1038)
+...+||+||+|++... .+.... ...++|+|++.|...... . ..+.......+..++.+++++..
T Consensus 80 ~~~~~~~Dvv~~h~~~~~-~~~~~~--~~~~~~~i~~~H~~~~~~-~--------~~~~~~~~~~~~~~d~~i~~~~~-- 145 (372)
T cd03792 80 PLLDLDADVVVIHDPQPL-ALPLFK--KKRGRPWIWRCHIDLSSP-N--------RRVWDFLQPYIEDYDAAVFHLPE-- 145 (372)
T ss_pred ccccCCCCEEEECCCCch-hHHHhh--hcCCCeEEEEeeeecCCC-c--------HHHHHHHHHHHHhCCEEeecHHH--
Confidence 22458999999988752 222222 234789999999632110 0 00011112234456665555422
Q ss_pred cccccCCCCCEEEcCCCCCCccccc--cccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 001646 290 MMYSAFDAGNYYVIPGSPAKAWEAD--TNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (1038)
Q Consensus 290 viyn~vd~~ki~VIPgsgVD~~~f~--~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~ 367 (1038)
.....+...++ +||+ |+|..... .+.+......+.++++++++++|+++| |+.+. ||++.+++|+..+.++.
T Consensus 146 ~~~~~~~~~~~-vipn-gvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vg-rl~~~---Kg~~~ll~a~~~l~~~~ 219 (372)
T cd03792 146 YVPPQVPPRKV-IIPP-SIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVS-RFDPW---KDPFGVIDAYRKVKERV 219 (372)
T ss_pred hcCCCCCCceE-EeCC-CCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEe-ccccc---cCcHHHHHHHHHHHhhC
Confidence 12223444445 8884 78863211 222223456778899999999999999 88888 99999999999998776
Q ss_pred ccCCCCCCCEEEEEEe-CCCC-CchHHHHHHHHHHcCCCCceEEEccCh----hhHHHHHHhcCEEEEcccCCcCCcCHH
Q 001646 368 SVENESNSPIKVMILS-GDST-SNYSVVIEAIAHNLHYPLGVVKHMAAE----GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (1038)
Q Consensus 368 p~~~~~~~~vkLVIVG-G~~~-e~Y~~~LeeLa~qLgL~d~~V~flG~~----edV~~lLaaADIfVlPS~~EeqGFPlv 441 (1038)
++ ++|+|+| |+.. ....+.++++.+..++.+ +|.|+|.. +++..+|++||++++||..| |||++
T Consensus 220 ~~-------~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~E--g~g~~ 289 (372)
T cd03792 220 PD-------PQLVLVGSGATDDPEGWIVYEEVLEYAEGDP-DIHVLTLPPVSDLEVNALQRASTVVLQKSIRE--GFGLT 289 (372)
T ss_pred CC-------CEEEEEeCCCCCCchhHHHHHHHHHHhCCCC-CeEEEecCCCCHHHHHHHHHhCeEEEeCCCcc--CCCHH
Confidence 77 9999999 6653 223445667676678877 79998864 78899999999999999998 79999
Q ss_pred HHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHH
Q 001646 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (1038)
Q Consensus 442 LLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~ 520 (1038)
++||||||+|||+|+.+|+.++|.++.+|++++ ++++++++|.+++++ ++.+++|+++|++.+ ++|+|+.++++
T Consensus 290 ~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~--~~~~~a~~i~~ll~~---~~~~~~~~~~a~~~~~~~~s~~~~~~~ 364 (372)
T cd03792 290 VTEALWKGKPVIAGPVGGIPLQIEDGETGFLVD--TVEEAAVRILYLLRD---PELRRKMGANAREHVRENFLITRHLKD 364 (372)
T ss_pred HHHHHHcCCCEEEcCCCCchhhcccCCceEEeC--CcHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 999999999999999999999999999999987 577899999999999 999999999999998 67999999999
Q ss_pred HHHHHHH
Q 001646 521 YAMLLEN 527 (1038)
Q Consensus 521 Y~~Lye~ 527 (1038)
|.++|++
T Consensus 365 ~~~~~~~ 371 (372)
T cd03792 365 YLYLISK 371 (372)
T ss_pred HHHHHHh
Confidence 9999986
No 12
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=1e-31 Score=298.98 Aligned_cols=344 Identities=19% Similarity=0.236 Sum_probs=250.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEccc----------chhHHHHhhhcC
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT----------GREKASFVNWLN 215 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~----------~rkl~~lI~~~k 215 (1038)
+|+++++++..||++..+..+++.|.+.||+|++++...+............ ..+.. ...+.++++..+
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATII-LNLNMSKNPLSFLLALWKLRKILRQFK 79 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhhccce-EEecccccchhhHHHHHHHHHHHHhcC
Confidence 4788999999999999999999999999999999987654322221111111 11111 112344566789
Q ss_pred CcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc--cccc-c
Q 001646 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV--LPMM-Y 292 (1038)
Q Consensus 216 pDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~--l~vi-y 292 (1038)
||+||+|.... ..+..++.....++|++++.|+............ +.....++.+...+.. .... .
T Consensus 80 pdiv~~~~~~~-~~~~~l~~~~~~~~~~v~~~h~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~~~~~~~~~~ 148 (360)
T cd04951 80 PDVVHAHMFHA-NIFARLLRLFLPSPPLICTAHSKNEGGRLRMLAY----------RLTDFLSDLTTNVSKEALDYFIAS 148 (360)
T ss_pred CCEEEEcccch-HHHHHHHHhhCCCCcEEEEeeccCchhHHHHHHH----------HHHhhccCceEEEcHHHHHHHHhc
Confidence 99999998776 3555555443567899999997332211111110 0001111111111111 1111 1
Q ss_pred ccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCC
Q 001646 293 SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (1038)
Q Consensus 293 n~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~ 372 (1038)
..++.+++.++|+ |+|...+... ...+...++++++.+++++++++| ++.+. ||++.+++|+..+.++.|+
T Consensus 149 ~~~~~~~~~~i~n-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g-~~~~~---kg~~~li~a~~~l~~~~~~--- 219 (360)
T cd04951 149 KAFNANKSFVVYN-GIDTDRFRKD-PARRLKIRNALGVKNDTFVILAVG-RLVEA---KDYPNLLKAFAKLLSDYLD--- 219 (360)
T ss_pred cCCCcccEEEEcc-ccchhhcCcc-hHHHHHHHHHcCcCCCCEEEEEEe-eCchh---cCcHHHHHHHHHHHhhCCC---
Confidence 2245678889985 7776433322 122456778888888899999999 67776 8999999999999888777
Q ss_pred CCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCC
Q 001646 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP 451 (1038)
Q Consensus 373 ~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkP 451 (1038)
++|+|+| |+.. +.+++.++++++.+ +|.++|+.+++..+|+.||++|+||..| |||++++|||++|+|
T Consensus 220 ----~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~s~~e--~~~~~~~Ea~a~G~P 288 (360)
T cd04951 220 ----IKLLIAGDGPLR----ATLERLIKALGLSN-RVKLLGLRDDIAAYYNAADLFVLSSAWE--GFGLVVAEAMACELP 288 (360)
T ss_pred ----eEEEEEcCCCcH----HHHHHHHHhcCCCC-cEEEecccccHHHHHHhhceEEeccccc--CCChHHHHHHHcCCC
Confidence 9999999 7765 77888888889887 8999999999999999999999999998 799999999999999
Q ss_pred EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Q 001646 452 IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (1038)
Q Consensus 452 VIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye 526 (1038)
||+++.|+..|++.+ +|++++++|+++++++|.+++++. +..+..++.+ ++.+ ++|+|+.++++|.++|+
T Consensus 289 vI~~~~~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~--~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 289 VVATDAGGVREVVGD--SGLIVPISDPEALANKIDEILKMS--GEERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred EEEecCCChhhEecC--CceEeCCCCHHHHHHHHHHHHhCC--HHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 999999999999987 799999999999999999999650 4445566666 6666 77999999999999985
No 13
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.4e-31 Score=310.33 Aligned_cols=342 Identities=16% Similarity=0.198 Sum_probs=252.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch---hhhh--hcCceEEEcc------------------
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH---EVWR--NIGVPVAILQ------------------ 202 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~---~~~e--~~gI~v~~l~------------------ 202 (1038)
+|++|++... .-.|..+.+-..+|.++|++|.+++...+... .... ....++..++
T Consensus 2 ~ia~~~~~~P-~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T PRK15427 2 KVGFFLLKFP-LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQTL 80 (406)
T ss_pred eEEEEeccCC-ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhHh
Confidence 7888888765 56688999999999999999999998553211 1111 1111111110
Q ss_pred -------------cch---hH---------HHHhhhcCCcEEEEcCCchhHHHHHHHhC-CCCCCCEEEEEeCchhHHhH
Q 001646 203 -------------TGR---EK---------ASFVNWLNYDGILVNSLEAKVVISNIMQE-PFKSLPLVWTIHEGTLATRA 256 (1038)
Q Consensus 203 -------------~~r---kl---------~~lI~~~kpDIVhvhs~~~~~~la~La~~-~~~gIPvI~tiHg~~L~~~l 256 (1038)
..+ .. ...++..+||+||+|..... .....+.. ...+.|+++|+|+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~-~~~~~~~~~~~~~~~~~~t~Hg~d~~~~- 158 (406)
T PRK15427 81 RGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAG-VTAAKLRELGVLRGKIATIFHGIDISSR- 158 (406)
T ss_pred hhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHH-HHHHHHHHhCCCCCCeEEEEcccccccc-
Confidence 000 00 11123468999999997663 44443322 1233467889998433211
Q ss_pred HHhhhhchhHHHHHHHHHHHhcceEeccCCc--cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCC
Q 001646 257 RNYASSGQLELLNDWKKVFNRATVVVFPDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDD 334 (1038)
Q Consensus 257 ek~~~~~~d~lIs~~~~~~~~a~~vvfps~~--l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~ 334 (1038)
..... .-..+...+..++.++..+.. ..+...+++.+++.+||+ |+|...|..... ....+.
T Consensus 159 -~~~~~----~~~~~~~~~~~ad~vv~~S~~~~~~l~~~g~~~~ki~vi~n-Gvd~~~f~~~~~----------~~~~~~ 222 (406)
T PRK15427 159 -EVLNH----YTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPPEKIAVSRM-GVDMTRFSPRPV----------KAPATP 222 (406)
T ss_pred -hhhhh----hhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCHHHEEEcCC-CCCHHHcCCCcc----------ccCCCC
Confidence 00000 011234456677776666554 112223566678999994 888754432111 112356
Q ss_pred EEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccC
Q 001646 335 LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA 413 (1038)
Q Consensus 335 ~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~ 413 (1038)
+.|+++| ++.+. ||++.+++|++.+.+++++ ++|+|+| |+.. +.++++++++++.+ +|.|+|+
T Consensus 223 ~~il~vG-rl~~~---Kg~~~ll~a~~~l~~~~~~-------~~l~ivG~G~~~----~~l~~~~~~~~l~~-~V~~~G~ 286 (406)
T PRK15427 223 LEIISVA-RLTEK---KGLHVAIEACRQLKEQGVA-------FRYRILGIGPWE----RRLRTLIEQYQLED-VVEMPGF 286 (406)
T ss_pred eEEEEEe-Ccchh---cCHHHHHHHHHHHHhhCCC-------EEEEEEECchhH----HHHHHHHHHcCCCC-eEEEeCC
Confidence 7899999 77777 9999999999999887777 9999999 7765 78999999999998 9999998
Q ss_pred h--hhHHHHHHhcCEEEEcccC------CcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHH
Q 001646 414 E--GDVDSVLNTADVVIYGSFL------EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHII 485 (1038)
Q Consensus 414 ~--edV~~lLaaADIfVlPS~~------EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI 485 (1038)
. +++.++|+.||++|+||.. | |||++++||||||+|||+|+.||++|+|.++.+|++++++|+++|+++|
T Consensus 287 ~~~~el~~~l~~aDv~v~pS~~~~~g~~E--g~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai 364 (406)
T PRK15427 287 KPSHEVKAMLDDADVFLLPSVTGADGDME--GIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDAQALAQRL 364 (406)
T ss_pred CCHHHHHHHHHhCCEEEECCccCCCCCcc--CccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCCCHHHHHHHH
Confidence 7 7899999999999999975 5 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-cCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHH
Q 001646 486 LQVIT-NGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN 527 (1038)
Q Consensus 486 ~~LLs-Dg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye~ 527 (1038)
.++++ | ++.+++|+++|++.+ ++|+++.+++++.++|++
T Consensus 365 ~~l~~~d---~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 365 AAFSQLD---TDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHhCC---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 99999 9 888999999999999 669999999999999976
No 14
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.5e-31 Score=303.79 Aligned_cols=354 Identities=15% Similarity=0.163 Sum_probs=256.7
Q ss_pred eEEEEcCCCC---CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccch-------hH-------H
Q 001646 146 QLALVFPDLL---IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR-------EK-------A 208 (1038)
Q Consensus 146 rIaiV~~~L~---iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~r-------kl-------~ 208 (1038)
+|++|.+... .||.+.++.++++.|.+. ++|+|++...+. ....++++....... .+ .
T Consensus 2 kI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (388)
T TIGR02149 2 KVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR----FDSEGLTVKGYRPWSELKEANKALGTFSVDLA 76 (388)
T ss_pred eeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch----hcCCCeEEEEecChhhccchhhhhhhhhHHHH
Confidence 6788877664 499999999999999987 788888765432 112234433222111 00 1
Q ss_pred HHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchh-HHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc
Q 001646 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL-ATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (1038)
Q Consensus 209 ~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L-~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~ 287 (1038)
......++|+||+|++.. .+.+.++ .+..++|+|+++|+... ..+............-......+..++.+++.+..
T Consensus 77 ~~~~~~~~divh~~~~~~-~~~~~~~-~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~ 154 (388)
T TIGR02149 77 MANDPVDADVVHSHTWYT-FLAGHLA-KKLYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGG 154 (388)
T ss_pred HhhCCCCCCeEeecchhh-hhHHHHH-HHhcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccHH
Confidence 111124799999998766 3444444 34568999999997321 11100000000000011123356677777776655
Q ss_pred cc----cccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHc
Q 001646 288 LP----MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPL 363 (1038)
Q Consensus 288 l~----viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L 363 (1038)
.. ..+.+++..++.+||+ |+|...+. +..+...+.+++++++.++++++| ++.+. ||++.+++|++.+
T Consensus 155 ~~~~~~~~~~~~~~~~i~vi~n-g~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~G-rl~~~---Kg~~~li~a~~~l 226 (388)
T TIGR02149 155 MREDILKYYPDLDPEKVHVIYN-GIDTKEYK---PDDGNVVLDRYGIDRSRPYILFVG-RITRQ---KGVPHLLDAVHYI 226 (388)
T ss_pred HHHHHHHHcCCCCcceEEEecC-CCChhhcC---CCchHHHHHHhCCCCCceEEEEEc-ccccc---cCHHHHHHHHHHH
Confidence 21 1122456678899995 78774333 223456778889988889999999 77777 9999999999988
Q ss_pred hhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEc-cCh--hhHHHHHHhcCEEEEcccCCcCCcC
Q 001646 364 FSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHM-AAE--GDVDSVLNTADVVIYGSFLEEQTFP 439 (1038)
Q Consensus 364 ~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~fl-G~~--edV~~lLaaADIfVlPS~~EeqGFP 439 (1038)
.. + ++++|+| |+....+.+.+++.+.+++....+|.++ |.. +++.++|+.||++|+||..| |||
T Consensus 227 ~~---~-------~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e--~~g 294 (388)
T TIGR02149 227 PK---D-------VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYE--PLG 294 (388)
T ss_pred hh---c-------CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccC--CCC
Confidence 53 3 7888888 6666566778888888777643357765 443 78999999999999999998 799
Q ss_pred HHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCH------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-Hhh
Q 001646 440 EILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENI------KALTHIILQVITNGKISPFARNIASIGRRSV-KNL 512 (1038)
Q Consensus 440 lvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~------eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~F 512 (1038)
++++|||+||+|||+|+.||.+|++.++.+|++++++|+ ++++++|.+++++ ++.+++|+.++++.+ ++|
T Consensus 295 ~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~~~~~ 371 (388)
T TIGR02149 295 IVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD---PELAKKMGIAGRKRAEEEF 371 (388)
T ss_pred hHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998 9999999999999 999999999999998 679
Q ss_pred CHHHHHHHHHHHHHHhh
Q 001646 513 MALETIEGYAMLLENVL 529 (1038)
Q Consensus 513 s~e~ia~~Y~~Lye~vL 529 (1038)
+|+.++++|.++|++++
T Consensus 372 s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 372 SWGSIAKKTVEMYRKVL 388 (388)
T ss_pred CHHHHHHHHHHHHHhhC
Confidence 99999999999999864
No 15
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=2.6e-31 Score=302.19 Aligned_cols=351 Identities=16% Similarity=0.170 Sum_probs=246.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchh--hhhhcCceEEEccc------chh---H----H-
Q 001646 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE--VWRNIGVPVAILQT------GRE---K----A- 208 (1038)
Q Consensus 145 prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~--~~e~~gI~v~~l~~------~rk---l----~- 208 (1038)
.+|+++++++..||+++++..+|+.|.+.||+|+|+|...++... ....-++.+..... ... + .
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRM 80 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHHHHH
Confidence 479999999999999999999999999999999999975433211 11111133322110 000 0 0
Q ss_pred -------HHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhH-HHhhhhchhHHHH-HHHHHHHhcc
Q 001646 209 -------SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRA-RNYASSGQLELLN-DWKKVFNRAT 279 (1038)
Q Consensus 209 -------~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~l-ek~~~~~~d~lIs-~~~~~~~~a~ 279 (1038)
..+...++|+||+++.... .. .+. ...+.|+|+++|........ ...........+. .....+..++
T Consensus 81 ~~~~~~~~~~~~~~~Dvi~~~~~~~~-~~-~~~--~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad 156 (392)
T cd03805 81 LYLALYLLLLPDEKYDVFIVDQVSAC-VP-LLK--LFSPSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMAD 156 (392)
T ss_pred HHHHHHHHhcccCCCCEEEEcCcchH-HH-HHH--HhcCCcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCce
Confidence 0134468999999876652 21 111 12237999999952111000 0000000011111 1223566777
Q ss_pred eEeccCCcccc-c---cccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHH
Q 001646 280 VVVFPDYVLPM-M---YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL 355 (1038)
Q Consensus 280 ~vvfps~~l~v-i---yn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldl 355 (1038)
.+++.+....- + +.......+.+|++ |+|...+...... ..+......++.++++++| ++.+. ||++.
T Consensus 157 ~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n-~vd~~~~~~~~~~---~~~~~~~~~~~~~~i~~~g-rl~~~---Kg~~~ 228 (392)
T cd03805 157 KIVVNSNFTASVFKKTFPSLAKNPREVVYP-CVDTDSFESTSED---PDPGLLIPKSGKKTFLSIN-RFERK---KNIAL 228 (392)
T ss_pred EEEEcChhHHHHHHHHhcccccCCcceeCC-CcCHHHcCccccc---ccccccccCCCceEEEEEe-eeccc---CChHH
Confidence 77776555211 1 12222233447774 7776433322111 1223345567788999999 88887 99999
Q ss_pred HHHHHHHchhhc---ccCCCCCCCEEEEEEe-CCCC----CchHHHHHHHHHH-cCCCCceEEEccCh--hhHHHHHHhc
Q 001646 356 ILRALLPLFSEV---SVENESNSPIKVMILS-GDST----SNYSVVIEAIAHN-LHYPLGVVKHMAAE--GDVDSVLNTA 424 (1038)
Q Consensus 356 LLeAl~~L~~k~---p~~~~~~~~vkLVIVG-G~~~----e~Y~~~LeeLa~q-LgL~d~~V~flG~~--edV~~lLaaA 424 (1038)
+++|+..+.++. ++ ++|+|+| |+.. ..|.+.+++++++ +++.+ +|.|+|++ +++..+|+.|
T Consensus 229 ll~a~~~l~~~~~~~~~-------~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~-~V~f~g~~~~~~~~~~l~~a 300 (392)
T cd03805 229 AIEAFAILKDKLAEFKN-------VRLVIAGGYDPRVAENVEYLEELQRLAEELLLLED-QVIFLPSISDSQKELLLSSA 300 (392)
T ss_pred HHHHHHHHHhhcccccC-------eEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCc-eEEEeCCCChHHHHHHHhhC
Confidence 999999998876 56 9999999 5442 2456788999999 99998 99999987 6678999999
Q ss_pred CEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 001646 425 DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASI 504 (1038)
Q Consensus 425 DIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~ 504 (1038)
|++|+||..| |||++++||||||+|||+++.||..|++.++.+|+++++ |+++++++|..++++ ++.+++|+++
T Consensus 301 d~~l~~s~~E--~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~---~~~~~~~~~~ 374 (392)
T cd03805 301 RALLYTPSNE--HFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-TPEEFAEAMLKLAND---PDLADRMGAA 374 (392)
T ss_pred eEEEECCCcC--CCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-CHHHHHHHHHHHHhC---hHHHHHHHHH
Confidence 9999999988 799999999999999999999999999999999999986 899999999999999 9999999999
Q ss_pred HHHHH-HhhCHHHHHHHH
Q 001646 505 GRRSV-KNLMALETIEGY 521 (1038)
Q Consensus 505 are~a-k~Fs~e~ia~~Y 521 (1038)
|++.+ ++|+|+.+++++
T Consensus 375 a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 375 GRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHhcCHHHHhhhC
Confidence 99998 679999998763
No 16
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.1e-31 Score=313.85 Aligned_cols=360 Identities=16% Similarity=0.161 Sum_probs=253.3
Q ss_pred ceEEEEcCCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh-------------------hhhcCceEEEc
Q 001646 145 PQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-------------------WRNIGVPVAIL 201 (1038)
Q Consensus 145 prIaiV~~~L----~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~-------------------~e~~gI~v~~l 201 (1038)
.+|++|...+ ..||...++..|+++|+++||+|.|+++..+..... ...-|++++.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 3678887764 479999999999999999999999999865432110 01134555433
Q ss_pred ccch------------h----------HHHHhhh--cCCcEEEEcCCchhHHHHHHHhCC----CCCCCEEEEEeCchhH
Q 001646 202 QTGR------------E----------KASFVNW--LNYDGILVNSLEAKVVISNIMQEP----FKSLPLVWTIHEGTLA 253 (1038)
Q Consensus 202 ~~~r------------k----------l~~lI~~--~kpDIVhvhs~~~~~~la~La~~~----~~gIPvI~tiHg~~L~ 253 (1038)
.... . ....+.. .+||+||+|.+.+ +.++.++... ..++|+|+|+|+....
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~-~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~ 159 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHT-GLIPALLKEKYWRGYPDIKTVFTIHNLAYQ 159 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHH-HHHHHHHHHhhhccCCCCCEEEEcCCCcCC
Confidence 2110 0 1112222 4899999999887 4555555422 2478999999983221
Q ss_pred Hh-----HHHhh----hhchhH-----HHHHHHHHHHhcceEeccCCc--cccccc----------cCCCCCEEEcCCCC
Q 001646 254 TR-----ARNYA----SSGQLE-----LLNDWKKVFNRATVVVFPDYV--LPMMYS----------AFDAGNYYVIPGSP 307 (1038)
Q Consensus 254 ~~-----lek~~----~~~~d~-----lIs~~~~~~~~a~~vvfps~~--l~viyn----------~vd~~ki~VIPgsg 307 (1038)
.. +.... ....+. .+...+..+..++.++..+.. ..+... ....+++.+|+| |
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~N-G 238 (466)
T PRK00654 160 GLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILN-G 238 (466)
T ss_pred CcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecC-C
Confidence 10 00000 000000 011223345666665554433 111111 123567889995 8
Q ss_pred CCccccccccc----------------hhhHHHHHhhCCCC-CCEEEEEEecccccccccccHHHHHHHHHHchhhcccC
Q 001646 308 AKAWEADTNMD----------------LYNDTVRVKMGFKP-DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVE 370 (1038)
Q Consensus 308 VD~~~f~~~~~----------------~~k~~lReklgi~~-d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~ 370 (1038)
+|...+.+... ..+..++.++|+++ +.++|+++| |+.++ ||++++++|++.+.++ +
T Consensus 239 id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vG-Rl~~~---KG~~~li~a~~~l~~~--~- 311 (466)
T PRK00654 239 IDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVS-RLTEQ---KGLDLVLEALPELLEQ--G- 311 (466)
T ss_pred CCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEee-ccccc---cChHHHHHHHHHHHhc--C-
Confidence 88865544221 11456788999985 678999999 88888 9999999999998754 3
Q ss_pred CCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhh-HHHHHHhcCEEEEcccCCcCCcCHHHHHHHHc
Q 001646 371 NESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGD-VDSVLNTADVVIYGSFLEEQTFPEILVKALCF 448 (1038)
Q Consensus 371 ~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~ed-V~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~ 448 (1038)
++|+|+| |+. .+.+.+++++++++. + .+.+.|+.++ +..+|++||++|+||.+| |||++++|||+|
T Consensus 312 ------~~lvivG~g~~--~~~~~l~~l~~~~~~-~-v~~~~g~~~~~~~~~~~~aDv~v~PS~~E--~~gl~~lEAma~ 379 (466)
T PRK00654 312 ------GQLVLLGTGDP--ELEEAFRALAARYPG-K-VGVQIGYDEALAHRIYAGADMFLMPSRFE--PCGLTQLYALRY 379 (466)
T ss_pred ------CEEEEEecCcH--HHHHHHHHHHHHCCC-c-EEEEEeCCHHHHHHHHhhCCEEEeCCCCC--CchHHHHHHHHC
Confidence 8999999 543 356788999987763 2 2345677644 568999999999999999 799999999999
Q ss_pred CCCEEEcCCcccccccccC------ccEEEEcCCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHhhCHHHHHH
Q 001646 449 RKPIIAPDLSNIRKYVDDR------VNGYLFPKENIKALTHIILQVIT---NGKISPFARNIASIGRRSVKNLMALETIE 519 (1038)
Q Consensus 449 GkPVIaTdvgGi~EiV~dG------~nGlLv~~~D~eaLAeAI~~LLs---Dg~l~elr~~mg~~are~ak~Fs~e~ia~ 519 (1038)
|+|||++++||++|+|.++ .+|++++++|+++|+++|.++++ + ++.+.+|+.++.+ ++|+|+.+++
T Consensus 380 G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~---~~~~~~~~~~~~~--~~fsw~~~a~ 454 (466)
T PRK00654 380 GTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQ---PPLWRALQRQAMA--QDFSWDKSAE 454 (466)
T ss_pred CCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHhc--cCCChHHHHH
Confidence 9999999999999999888 89999999999999999999887 5 6667788877753 6799999999
Q ss_pred HHHHHHHHhhc
Q 001646 520 GYAMLLENVLK 530 (1038)
Q Consensus 520 ~Y~~Lye~vLk 530 (1038)
+|.++|+++++
T Consensus 455 ~~~~lY~~~~~ 465 (466)
T PRK00654 455 EYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 17
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=6.6e-31 Score=325.50 Aligned_cols=368 Identities=14% Similarity=0.122 Sum_probs=263.1
Q ss_pred CCCceEEEEcCC-------------CCCChHHHHHHHHHHHHHHcC--CeEEEEEcCCCcch------hhh---------
Q 001646 142 YRKPQLALVFPD-------------LLIDPQQLQMVTIAIALREIG--YAIQVYSLEDGRAH------EVW--------- 191 (1038)
Q Consensus 142 ~R~prIaiV~~~-------------L~iGGae~~v~~LAkaL~k~G--~eV~V~t~~~g~~~------~~~--------- 191 (1038)
.++..|++|..+ -..||+.+++..||++|.++| |+|.|+|-...+.. ...
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 356777776552 246899999999999999998 89999998543210 010
Q ss_pred -------hhcCceEEEcccch------h-------------HHHHhhh--------------cCCcEEEEcCCchhHHHH
Q 001646 192 -------RNIGVPVAILQTGR------E-------------KASFVNW--------------LNYDGILVNSLEAKVVIS 231 (1038)
Q Consensus 192 -------e~~gI~v~~l~~~r------k-------------l~~lI~~--------------~kpDIVhvhs~~~~~~la 231 (1038)
..-|+.+..+++.. + +...+.. ..||+||.|.+.+ +..+
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~s-G~aa 325 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADA-GDSA 325 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchH-HHHH
Confidence 11244454444221 0 0111111 1399999999887 3555
Q ss_pred HHHhCCCCCCCEEEEEeCchhHHh-HHHhhh-----------h-chhHHHHHHHHHHHhcceEeccCCc----ccccccc
Q 001646 232 NIMQEPFKSLPLVWTIHEGTLATR-ARNYAS-----------S-GQLELLNDWKKVFNRATVVVFPDYV----LPMMYSA 294 (1038)
Q Consensus 232 ~La~~~~~gIPvI~tiHg~~L~~~-lek~~~-----------~-~~d~lIs~~~~~~~~a~~vvfps~~----l~viyn~ 294 (1038)
.++. ...++|+|+|.|. +... ..+... . ....-+......+..++.++..+.. +.-.|..
T Consensus 326 ~~L~-~~lgVP~V~T~HS--Lgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~ 402 (1050)
T TIGR02468 326 ALLS-GALNVPMVLTGHS--LGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDG 402 (1050)
T ss_pred HHHH-HhhCCCEEEECcc--chhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhcc
Confidence 5553 4678999999995 2111 110000 0 0012233334466777776665544 2222332
Q ss_pred CC---------------------CCCEEEcCCCCCCccccccccchh-h-----------------HHHHHhhCCCCCCE
Q 001646 295 FD---------------------AGNYYVIPGSPAKAWEADTNMDLY-N-----------------DTVRVKMGFKPDDL 335 (1038)
Q Consensus 295 vd---------------------~~ki~VIPgsgVD~~~f~~~~~~~-k-----------------~~lReklgi~~d~~ 335 (1038)
++ ..++.|||+ |+|+..|.+..... . ..++ .+...++++
T Consensus 403 ~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPp-GVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~-r~~~~pdkp 480 (1050)
T TIGR02468 403 FDVILERKLRARARRGVSCYGRFMPRMAVIPP-GMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIM-RFFTNPRKP 480 (1050)
T ss_pred CCchhhhhhhhhhcccccccccCCCCeEEeCC-CCcHHHccCCCccccchhcccccccccccchhhHHHH-hhcccCCCc
Confidence 22 238899995 89987666532111 0 1122 334567888
Q ss_pred EEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCC-------CchHHHHHHHHHHcCCCCce
Q 001646 336 VIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDST-------SNYSVVIEAIAHNLHYPLGV 407 (1038)
Q Consensus 336 vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~-------e~Y~~~LeeLa~qLgL~d~~ 407 (1038)
+|+++| |+.++ ||++.||+|+..+.+..+. .++. +|+| |+.. ..+...++.+++++++.+ +
T Consensus 481 vIL~VG-RL~p~---KGi~~LIeAf~~L~~l~~~-----~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g-~ 549 (1050)
T TIGR02468 481 MILALA-RPDPK---KNITTLVKAFGECRPLREL-----ANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYG-Q 549 (1050)
T ss_pred EEEEEc-CCccc---cCHHHHHHHHHHhHhhccC-----CCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCC-e
Confidence 999999 88888 9999999999998753221 1255 4567 5432 123467888999999998 9
Q ss_pred EEEccCh--hhHHHHHHhc----CEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHH
Q 001646 408 VKHMAAE--GDVDSVLNTA----DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL 481 (1038)
Q Consensus 408 V~flG~~--edV~~lLaaA----DIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaL 481 (1038)
|.|+|+. +++..+|+.| |+||+||.+| |||++++||||||+|||+|+.||++|+|.++.+|+++++.|+++|
T Consensus 550 V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~E--gFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~eaL 627 (1050)
T TIGR02468 550 VAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIE--PFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQAI 627 (1050)
T ss_pred EEecCCCCHHHHHHHHHHhhhcCCeeeCCcccC--CCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCHHHH
Confidence 9999974 8999999988 6999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhcC
Q 001646 482 THIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL 531 (1038)
Q Consensus 482 AeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vLk~ 531 (1038)
|++|.++++| ++++++|+.+|++.+++|+|+.++++|.+++..++..
T Consensus 628 A~AL~~LL~D---pelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~~~ 674 (1050)
T TIGR02468 628 ADALLKLVAD---KQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCRPR 674 (1050)
T ss_pred HHHHHHHhhC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999 9999999999999998899999999999999988644
No 18
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=9.5e-31 Score=300.49 Aligned_cols=329 Identities=14% Similarity=0.173 Sum_probs=240.4
Q ss_pred CCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh-hhhcCceEEEcccc-------------------hhHHHHhh
Q 001646 153 DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-WRNIGVPVAILQTG-------------------REKASFVN 212 (1038)
Q Consensus 153 ~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~-~e~~gI~v~~l~~~-------------------rkl~~lI~ 212 (1038)
....||+|.++..+++.|.. +|+|++......... ...-|+.++.++.. ..+...+.
T Consensus 17 ~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (380)
T PRK15484 17 PRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYSQRILNIAH 93 (380)
T ss_pred CccccHHHHHHHHhhhhccC---CeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccCchhHHHHHHHHHH
Confidence 34579999999999999943 999999876432222 22223333333221 11222233
Q ss_pred h---cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc-
Q 001646 213 W---LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL- 288 (1038)
Q Consensus 213 ~---~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l- 288 (1038)
. .++|+||+|.... .+..+. ....+.|++.++|+.-.. ... ..++.+++++...
T Consensus 94 ~~~~~~~~vi~v~~~~~--~~~~~~-~~~~~~~~v~~~h~~~~~----~~~---------------~~~~~ii~~S~~~~ 151 (380)
T PRK15484 94 KFTITKDSVIVIHNSMK--LYRQIR-ERAPQAKLVMHMHNAFEP----ELL---------------DKNAKIIVPSQFLK 151 (380)
T ss_pred hcCCCCCcEEEEeCcHH--hHHHHH-hhCCCCCEEEEEecccCh----hHh---------------ccCCEEEEcCHHHH
Confidence 3 4699999998554 333333 346778999999963111 000 1122233332221
Q ss_pred ccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcc
Q 001646 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (1038)
Q Consensus 289 ~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p 368 (1038)
..+...++..++.+||+ |+|...+. +..+...+..++++++..+|+++| ++.+. ||++.+++|+..+.+++|
T Consensus 152 ~~~~~~~~~~~i~vIpn-gvd~~~~~---~~~~~~~~~~~~~~~~~~~il~~G-rl~~~---Kg~~~Li~A~~~l~~~~p 223 (380)
T PRK15484 152 KFYEERLPNADISIVPN-GFCLETYQ---SNPQPNLRQQLNISPDETVLLYAG-RISPD---KGILLLMQAFEKLATAHS 223 (380)
T ss_pred HHHHhhCCCCCEEEecC-CCCHHHcC---CcchHHHHHHhCCCCCCeEEEEec-cCccc---cCHHHHHHHHHHHHHhCC
Confidence 11112234567888885 78864332 223445677888888888999999 77777 999999999999998888
Q ss_pred cCCCCCCCEEEEEEe-CCC-----CCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCH
Q 001646 369 VENESNSPIKVMILS-GDS-----TSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPE 440 (1038)
Q Consensus 369 ~~~~~~~~vkLVIVG-G~~-----~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPl 440 (1038)
+ ++|+|+| |+. ...|.+.+++++++++ + +|.|+|+. +++.++|++||++|+||.+++ |||+
T Consensus 224 ~-------~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~-~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E-~f~~ 292 (380)
T PRK15484 224 N-------LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--D-RCIMLGGQPPEKMHNYYPLADLVVVPSQVEE-AFCM 292 (380)
T ss_pred C-------eEEEEEeCCccccccchhHHHHHHHHHHHhcC--C-cEEEeCCCCHHHHHHHHHhCCEEEeCCCCcc-cccc
Confidence 8 9999999 653 2346667777887665 4 69999976 689999999999999998643 8999
Q ss_pred HHHHHHHcCCCEEEcCCcccccccccCccEE-EEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHH
Q 001646 441 ILVKALCFRKPIIAPDLSNIRKYVDDRVNGY-LFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETI 518 (1038)
Q Consensus 441 vLLEAMA~GkPVIaTdvgGi~EiV~dG~nGl-Lv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia 518 (1038)
+++||||||+|||+|+.||++|++.++.+|+ ++++.|+++++++|.++++| ++. .+|+++|++.+ ++|+|+.++
T Consensus 293 ~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d---~~~-~~~~~~ar~~~~~~fsw~~~a 368 (380)
T PRK15484 293 VAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLAD---PEL-TQIAEQAKDFVFSKYSWEGVT 368 (380)
T ss_pred HHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC---HHH-HHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999998 56789999999999999999 765 78999999988 779999999
Q ss_pred HHHHHHHHHhh
Q 001646 519 EGYAMLLENVL 529 (1038)
Q Consensus 519 ~~Y~~Lye~vL 529 (1038)
++|.++|++..
T Consensus 369 ~~~~~~l~~~~ 379 (380)
T PRK15484 369 QRFEEQIHNWF 379 (380)
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 19
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=1e-30 Score=291.59 Aligned_cols=333 Identities=15% Similarity=0.162 Sum_probs=241.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc--chhhhhhcCceEEEcccc--------hhHHHHhhhcC
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR--AHEVWRNIGVPVAILQTG--------REKASFVNWLN 215 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~--~~~~~e~~gI~v~~l~~~--------rkl~~lI~~~k 215 (1038)
||++|.+++..||++..+.+++++|.+.||+|++++..... ........++.+..+... ..+...++..+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKNK 80 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcCC
Confidence 58899999999999999999999999999999999987644 223334445554433221 23344456689
Q ss_pred CcEEEEcCCchhHHHHHHHhCCCCCCC-EEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc-cccccc
Q 001646 216 YDGILVNSLEAKVVISNIMQEPFKSLP-LVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-LPMMYS 293 (1038)
Q Consensus 216 pDIVhvhs~~~~~~la~La~~~~~gIP-vI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~-l~viyn 293 (1038)
||+||+|..... .+..+.... .+.| ++++.|+............ .. ..........++.++..+.. ...+..
T Consensus 81 ~Dvv~~~~~~~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~i~~s~~~~~~~~~ 154 (358)
T cd03812 81 YDIVHVHGSSAS-GFILLAAKK-AGVKVRIAHSHNTSDSHDKKKKIL---KY-KVLRKLINRLATDYLACSEEAGKWLFG 154 (358)
T ss_pred CCEEEEeCcchh-HHHHHHHhh-CCCCeEEEEeccccccccccchhh---HH-HHHHHHHHhcCCEEEEcCHHHHHHHHh
Confidence 999999998753 444444333 3445 5677786221111000000 00 00111233445555444433 111112
Q ss_pred cCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCC
Q 001646 294 AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENES 373 (1038)
Q Consensus 294 ~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~ 373 (1038)
.+...++.+||+ |+|...+...... +. .+...+..+++++|+++| ++.+. ||++.+++|+..+.+++++
T Consensus 155 ~~~~~~~~vi~n-gvd~~~~~~~~~~-~~-~~~~~~~~~~~~~i~~vG-r~~~~---Kg~~~li~a~~~l~~~~~~---- 223 (358)
T cd03812 155 KVKNKKFKVIPN-GIDLEKFIFNEEI-RK-KRRELGILEDKFVIGHVG-RFSEQ---KNHEFLIEIFAELLKKNPN---- 223 (358)
T ss_pred CCCcccEEEEec-cCcHHHcCCCchh-hh-HHHHcCCCCCCEEEEEEe-ccccc---cChHHHHHHHHHHHHhCCC----
Confidence 145678899995 7877443332211 22 255667778889999999 77777 9999999999999988887
Q ss_pred CCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCE
Q 001646 374 NSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPI 452 (1038)
Q Consensus 374 ~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPV 452 (1038)
++++|+| |+.. ..+++.++++++.+ +|.++|+.+++.++|+.||++|+||..| |||++++||||+|+||
T Consensus 224 ---~~l~ivG~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ps~~E--~~~~~~lEAma~G~Pv 293 (358)
T cd03812 224 ---AKLLLVGDGELE----EEIKKKVKELGLED-KVIFLGVRNDVPELLQAMDVFLFPSLYE--GLPLVLIEAQASGLPC 293 (358)
T ss_pred ---eEEEEEeCCchH----HHHHHHHHhcCCCC-cEEEecccCCHHHHHHhcCEEEeccccc--CCCHHHHHHHHhCCCE
Confidence 9999999 7765 77888888899988 8999999999999999999999999998 7999999999999999
Q ss_pred EEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001646 453 IAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV 509 (1038)
Q Consensus 453 IaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a 509 (1038)
|+|+.||.++++.++ .|++..++++++++++|.+++++ ++.+++++..++...
T Consensus 294 I~s~~~~~~~~i~~~-~~~~~~~~~~~~~a~~i~~l~~~---~~~~~~~~~~~~~~~ 346 (358)
T cd03812 294 ILSDTITKEVDLTDL-VKFLSLDESPEIWAEEILKLKSE---DRRERSSESIKKKGL 346 (358)
T ss_pred EEEcCCchhhhhccC-ccEEeCCCCHHHHHHHHHHHHhC---cchhhhhhhhhhccc
Confidence 999999999999884 46777777899999999999999 998888877776554
No 20
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=1.2e-30 Score=287.00 Aligned_cols=351 Identities=15% Similarity=0.142 Sum_probs=248.4
Q ss_pred eEEEEcCCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCce-----EEE----------cccchhHH
Q 001646 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVP-----VAI----------LQTGREKA 208 (1038)
Q Consensus 146 rIaiV~~~L--~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~-----v~~----------l~~~rkl~ 208 (1038)
||++|++.+ ..||++..+.++++.|.+.||+|++++................ ... ........
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 578888888 6899999999999999999999999998764422222111100 000 00001111
Q ss_pred HHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhH-HHhhhhchhHHHHHHHHHHHhcceEeccCCc
Q 001646 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRA-RNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (1038)
Q Consensus 209 ~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~l-ek~~~~~~d~lIs~~~~~~~~a~~vvfps~~ 287 (1038)
......++|+||+|+.............+..++|++++.|+....... .......... ..........++.+.+.+..
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~s~~ 159 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRLAW-FLFERRLLQAAAAVHATSEQ 159 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccccchhhhHHHH-HHHHHHHHhcCCEEEECCHH
Confidence 123336899999998544222222222234678999999973211100 0000000000 11122244455655555433
Q ss_pred -cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhh
Q 001646 288 -LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE 366 (1038)
Q Consensus 288 -l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k 366 (1038)
...........++.++|+ |+|...+... .....+..++.+++.++++++| ++.+. ||++.+++|+..+.++
T Consensus 160 ~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~G-~~~~~---K~~~~li~a~~~l~~~ 231 (375)
T cd03821 160 EAAEIRRLGLKAPIAVIPN-GVDIPPFAAL---PSRGRRRKFPILPDKRIILFLG-RLHPK---KGLDLLIEAFAKLAER 231 (375)
T ss_pred HHHHHHhhCCcccEEEcCC-CcChhccCcc---hhhhhhhhccCCCCCcEEEEEe-Ccchh---cCHHHHHHHHHHhhhh
Confidence 222233344578889995 7776433322 1111266777888889999999 77777 8999999999999988
Q ss_pred cccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHH
Q 001646 367 VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (1038)
Q Consensus 367 ~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLL 443 (1038)
+++ ++|+|+| +.. .+...++.++.++++.+ +|.++|++ +++..+|+.||++|+||..| |||++++
T Consensus 232 ~~~-------~~l~i~G~~~~--~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~adv~v~ps~~e--~~~~~~~ 299 (375)
T cd03821 232 FPD-------WHLVIAGPDEG--GYRAELKQIAAALGLED-RVTFTGMLYGEDKAAALADADLFVLPSHSE--NFGIVVA 299 (375)
T ss_pred cCC-------eEEEEECCCCc--chHHHHHHHHHhcCccc-eEEEcCCCChHHHHHHHhhCCEEEeccccC--CCCcHHH
Confidence 777 9999999 443 24466677778899988 89999988 48999999999999999998 7999999
Q ss_pred HHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHH
Q 001646 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (1038)
Q Consensus 444 EAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~ 522 (1038)
|||+||+|||+++.+|..+++.+ .+|++++. ++++++++|.+++++ ++.+.++++++++.+ ++|+|+.+++.|.
T Consensus 300 Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 300 EALACGTPVVTTDKVPWQELIEY-GCGWVVDD-DVDALAAALRRALEL---PQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred HHHhcCCCEEEcCCCCHHHHhhc-CceEEeCC-ChHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999999999999999999988 77888875 569999999999999 999999999999996 7799999999875
No 21
>PLN02316 synthase/transferase
Probab=99.98 E-value=2.2e-30 Score=321.68 Aligned_cols=352 Identities=13% Similarity=0.134 Sum_probs=255.5
Q ss_pred CCceEEEEcCCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchh-----h-------h----------hhcCc
Q 001646 143 RKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE-----V-------W----------RNIGV 196 (1038)
Q Consensus 143 R~prIaiV~~~L----~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~-----~-------~----------e~~gI 196 (1038)
.|.+|++|...+ ..||...++..|+++|+++||+|.|+++..+.... . + ..-|+
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV 665 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGL 665 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECCc
Confidence 468899998875 36999999999999999999999999986543110 0 0 00134
Q ss_pred eEEEcccch----------------h-------HHHHhhh--cCCcEEEEcCCchhHHHHHHHhCC-----CCCCCEEEE
Q 001646 197 PVAILQTGR----------------E-------KASFVNW--LNYDGILVNSLEAKVVISNIMQEP-----FKSLPLVWT 246 (1038)
Q Consensus 197 ~v~~l~~~r----------------k-------l~~lI~~--~kpDIVhvhs~~~~~~la~La~~~-----~~gIPvI~t 246 (1038)
+++.+.... + ...++.. .+|||||+|.+.. +.++.++... ..++|+|+|
T Consensus 666 ~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~t-alva~llk~~~~~~~~~~~p~V~T 744 (1036)
T PLN02316 666 SVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSS-APVAWLFKDHYAHYGLSKARVVFT 744 (1036)
T ss_pred EEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChH-HHHHHHHHHhhhhhccCCCCEEEE
Confidence 444333210 0 0111221 4899999999877 4555554321 356899999
Q ss_pred EeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc--cccc-ccCC--CCCEEEcCCCCCCccccccccc---
Q 001646 247 IHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMMY-SAFD--AGNYYVIPGSPAKAWEADTNMD--- 318 (1038)
Q Consensus 247 iHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l--~viy-n~vd--~~ki~VIPgsgVD~~~f~~~~~--- 318 (1038)
+|+....... ....+..++.++..+... .+.. ..+. ..++.+|++ |+|...+.+...
T Consensus 745 iHnl~~~~n~--------------lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~N-GID~~~w~P~tD~~l 809 (1036)
T PLN02316 745 IHNLEFGANH--------------IGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILN-GIDPDIWDPYNDNFI 809 (1036)
T ss_pred eCCcccchhH--------------HHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEEC-CccccccCCcccccc
Confidence 9973221100 112334555554443331 1111 1222 368889985 888755433211
Q ss_pred --------------hhhHHHHHhhCCCC-CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe
Q 001646 319 --------------LYNDTVRVKMGFKP-DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS 383 (1038)
Q Consensus 319 --------------~~k~~lReklgi~~-d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG 383 (1038)
..+..+++++|++. +.++|++|| |+.++ ||+++|++|+..+.+. + ++|+|+|
T Consensus 810 p~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VG-RL~~q---KGvdlLi~Al~~ll~~--~-------~qlVIvG 876 (1036)
T PLN02316 810 PVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIIT-RLTHQ---KGIHLIKHAIWRTLER--N-------GQVVLLG 876 (1036)
T ss_pred cccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEe-ccccc---cCHHHHHHHHHHHhhc--C-------cEEEEEe
Confidence 11456788999984 678999999 88888 8999999999998753 3 8999999
Q ss_pred -CCCCCchHHHHHHHHHHcCC--CCceEEEccChhhH--HHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc
Q 001646 384 -GDSTSNYSVVIEAIAHNLHY--PLGVVKHMAAEGDV--DSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (1038)
Q Consensus 384 -G~~~e~Y~~~LeeLa~qLgL--~d~~V~flG~~edV--~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg 458 (1038)
|+.. .+...+++++.++++ ++ +|.|.|..++. ..+|++||+||+||.+| +||++++|||+||+|+|++++|
T Consensus 877 ~Gpd~-~~e~~l~~La~~Lg~~~~~-rV~f~g~~de~lah~iyaaADiflmPS~~E--P~GLvqLEAMa~GtppVvs~vG 952 (1036)
T PLN02316 877 SAPDP-RIQNDFVNLANQLHSSHHD-RARLCLTYDEPLSHLIYAGADFILVPSIFE--PCGLTQLTAMRYGSIPVVRKTG 952 (1036)
T ss_pred CCCCH-HHHHHHHHHHHHhCccCCC-eEEEEecCCHHHHHHHHHhCcEEEeCCccc--CccHHHHHHHHcCCCeEEEcCC
Confidence 7653 466889999999876 45 89988765443 37999999999999999 6999999999999999999999
Q ss_pred ccccccccC-------------ccEEEEcCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHH-HhhCHHHHHHHHHH
Q 001646 459 NIRKYVDDR-------------VNGYLFPKENIKALTHIILQVITNGKIS-PFARNIASIGRRSV-KNLMALETIEGYAM 523 (1038)
Q Consensus 459 Gi~EiV~dG-------------~nGlLv~~~D~eaLAeAI~~LLsDg~l~-elr~~mg~~are~a-k~Fs~e~ia~~Y~~ 523 (1038)
|++|+|.|+ .+|+++++.|+++|+.+|.+++++ . +....++..+++.+ +.|+|+.++++|.+
T Consensus 953 GL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~---~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~ 1029 (1036)
T PLN02316 953 GLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA---WYDGRDWFNSLCKRVMEQDWSWNRPALDYME 1029 (1036)
T ss_pred CcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 999999874 689999999999999999999986 3 44556788888887 66999999999999
Q ss_pred HHHHhhc
Q 001646 524 LLENVLK 530 (1038)
Q Consensus 524 Lye~vLk 530 (1038)
+|+.+.+
T Consensus 1030 LY~~a~~ 1036 (1036)
T PLN02316 1030 LYHSARK 1036 (1036)
T ss_pred HHHHHhC
Confidence 9998764
No 22
>PLN02939 transferase, transferring glycosyl groups
Probab=99.98 E-value=5.3e-30 Score=313.39 Aligned_cols=366 Identities=11% Similarity=0.106 Sum_probs=262.6
Q ss_pred CCCceEEEEcCCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh---------------h-----------
Q 001646 142 YRKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV---------------W----------- 191 (1038)
Q Consensus 142 ~R~prIaiV~~~L----~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~---------------~----------- 191 (1038)
-++.+|++|...+ ..||..-++..|.++|+++||+|.|+.+..+..... +
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 3568999998876 479999999999999999999999999865322100 0
Q ss_pred -hhcCceEEEccc------------c---hhH----------HHHhhh--cCCcEEEEcCCchhHHHHHHHh-----CCC
Q 001646 192 -RNIGVPVAILQT------------G---REK----------ASFVNW--LNYDGILVNSLEAKVVISNIMQ-----EPF 238 (1038)
Q Consensus 192 -e~~gI~v~~l~~------------~---rkl----------~~lI~~--~kpDIVhvhs~~~~~~la~La~-----~~~ 238 (1038)
...|++++.+.. + ... ..++.. .+|||||||.+... +++.++. ..+
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~Ta-LV~pll~~~y~~~~~ 637 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTA-FVAPLYWDLYAPKGF 637 (977)
T ss_pred EEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHH-HHHHHHHHHHhhccC
Confidence 002344444421 0 011 112222 58999999999983 5433321 124
Q ss_pred CCCCEEEEEeCchhHHh-----HHH------hh--h-hc---hhHHHHHHHHHHHhcceEeccCCc--cccc-cc-----
Q 001646 239 KSLPLVWTIHEGTLATR-----ARN------YA--S-SG---QLELLNDWKKVFNRATVVVFPDYV--LPMM-YS----- 293 (1038)
Q Consensus 239 ~gIPvI~tiHg~~L~~~-----lek------~~--~-~~---~d~lIs~~~~~~~~a~~vvfps~~--l~vi-yn----- 293 (1038)
.++|+|+|+|+...... +.. .. . .. ....+...+..+..++.+...+.. ..+. ..
T Consensus 638 ~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~ 717 (977)
T PLN02939 638 NSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQ 717 (977)
T ss_pred CCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchH
Confidence 56899999998322111 100 00 0 00 001133334455556765554433 1111 11
Q ss_pred ---cCCCCCEEEcCCCCCCccccccccch----------------hhHHHHHhhCCCC---CCEEEEEEecccccccccc
Q 001646 294 ---AFDAGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFKP---DDLVIAIVGTQFMYRGLWL 351 (1038)
Q Consensus 294 ---~vd~~ki~VIPgsgVD~~~f~~~~~~----------------~k~~lReklgi~~---d~~vIL~VGsrl~~~KGiK 351 (1038)
.....++.+|+| |+|...+.+.... .+..+++++|+++ +.++|++|| |+.++ |
T Consensus 718 ~~L~~~~~Kl~gIlN-GID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VG-RL~~Q---K 792 (977)
T PLN02939 718 DTLKFHSKKFVGILN-GIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCIT-RLVPQ---K 792 (977)
T ss_pred HHhccccCCceEEec-ceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEee-cCCcc---c
Confidence 123578889995 8887655543321 2567889999984 468999999 88888 8
Q ss_pred cHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhh--HHHHHHhcCEEE
Q 001646 352 EHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGD--VDSVLNTADVVI 428 (1038)
Q Consensus 352 gldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~ed--V~~lLaaADIfV 428 (1038)
|++++++|+..+.. ++ ++|+|+| |+.. .|...++++++++++.+ +|.|+|..++ ...+|++||+||
T Consensus 793 GiDlLleA~~~Ll~--~d-------vqLVIvGdGp~~-~~e~eL~~La~~l~l~d-rV~FlG~~de~lah~IYAaADIFL 861 (977)
T PLN02939 793 GVHLIRHAIYKTAE--LG-------GQFVLLGSSPVP-HIQREFEGIADQFQSNN-NIRLILKYDEALSHSIYAASDMFI 861 (977)
T ss_pred ChHHHHHHHHHHhh--cC-------CEEEEEeCCCcH-HHHHHHHHHHHHcCCCC-eEEEEeccCHHHHHHHHHhCCEEE
Confidence 99999999988764 23 7999999 7653 45678899999999988 8999997744 357999999999
Q ss_pred EcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccccc---------CccEEEEcCCCHHHHHHHHHHHHH----cCCCc
Q 001646 429 YGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD---------RVNGYLFPKENIKALTHIILQVIT----NGKIS 495 (1038)
Q Consensus 429 lPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~d---------G~nGlLv~~~D~eaLAeAI~~LLs----Dg~l~ 495 (1038)
+||.+| +||++++|||+||+|+|++++||+.|+|.+ +.+|+++++.|+++|+++|.++++ + +
T Consensus 862 mPSr~E--PfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~d---p 936 (977)
T PLN02939 862 IPSMFE--PCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRK---P 936 (977)
T ss_pred ECCCcc--CCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccC---H
Confidence 999998 799999999999999999999999999865 579999999999999999998875 7 7
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhcC
Q 001646 496 PFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL 531 (1038)
Q Consensus 496 elr~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vLk~ 531 (1038)
+.+.+|+.++. .++|+|+.++++|.++|+.++..
T Consensus 937 e~~~~L~~~am--~~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 937 EVWKQLVQKDM--NIDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHh
Confidence 88888987653 36799999999999999998753
No 23
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.98 E-value=4.5e-30 Score=302.67 Aligned_cols=357 Identities=14% Similarity=0.157 Sum_probs=252.5
Q ss_pred ceEEEEcCCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh--------------------------hhc
Q 001646 145 PQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--------------------------RNI 194 (1038)
Q Consensus 145 prIaiV~~~L----~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~--------------------------e~~ 194 (1038)
++|++|.... ..||...++..|+++|+++||+|.|+++..+...... ..-
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 3678887763 4799999999999999999999999998654321110 011
Q ss_pred CceEEEcccc---------------hh----------HHHHhhh--cCCcEEEEcCCchhHHHHHHHhCCCC--CCCEEE
Q 001646 195 GVPVAILQTG---------------RE----------KASFVNW--LNYDGILVNSLEAKVVISNIMQEPFK--SLPLVW 245 (1038)
Q Consensus 195 gI~v~~l~~~---------------rk----------l~~lI~~--~kpDIVhvhs~~~~~~la~La~~~~~--gIPvI~ 245 (1038)
|++++.+... .. ...++.. .+||+||+|.+.. +.++.++..... ++|+|+
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~-~~~~~~l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHT-ALVPALLKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHH-HHHHHHHHhhccCCCCCEEE
Confidence 3333332211 00 0111222 5899999999877 355555543333 489999
Q ss_pred EEeCchhHH-----hHHHhhh-------hc--hhHHHHHHHHHHHhcceEeccCCc--ccccc--c--c------CCCCC
Q 001646 246 TIHEGTLAT-----RARNYAS-------SG--QLELLNDWKKVFNRATVVVFPDYV--LPMMY--S--A------FDAGN 299 (1038)
Q Consensus 246 tiHg~~L~~-----~lek~~~-------~~--~d~lIs~~~~~~~~a~~vvfps~~--l~viy--n--~------vd~~k 299 (1038)
|+|+..... .+..... .. ....+...+..+..++.++..+.. ..+.. . + ....+
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~k 239 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGK 239 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCC
Confidence 999832110 1111000 00 000122334456677766555443 11111 0 1 13468
Q ss_pred EEEcCCCCCCccccccccc----------------hhhHHHHHhhCCCC--CCEEEEEEecccccccccccHHHHHHHHH
Q 001646 300 YYVIPGSPAKAWEADTNMD----------------LYNDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILRALL 361 (1038)
Q Consensus 300 i~VIPgsgVD~~~f~~~~~----------------~~k~~lReklgi~~--d~~vIL~VGsrl~~~KGiKgldlLLeAl~ 361 (1038)
+.+|+| |+|...+.+... ..+..+++++|++. +.++|+++| ++.++ ||++++++|+.
T Consensus 240 i~~I~N-Gid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~ 314 (473)
T TIGR02095 240 LRGILN-GIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVIS-RLTQQ---KGVDLLLAALP 314 (473)
T ss_pred eEEEeC-CCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEe-cCccc---cChHHHHHHHH
Confidence 889995 888765543221 11456888999886 778999999 88887 89999999999
Q ss_pred HchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEcc-Ch-hhHHHHHHhcCEEEEcccCCcCCc
Q 001646 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTF 438 (1038)
Q Consensus 362 ~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG-~~-edV~~lLaaADIfVlPS~~EeqGF 438 (1038)
.+.++ + ++|+|+| |+ ..+.+.+++++.+++ + +|.+.+ .. +++..+|++||++|+||.+| +|
T Consensus 315 ~l~~~--~-------~~lvi~G~g~--~~~~~~l~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E--~~ 378 (473)
T TIGR02095 315 ELLEL--G-------GQLVVLGTGD--PELEEALRELAERYP--G-NVRVIIGYDEALAHLIYAGADFILMPSRFE--PC 378 (473)
T ss_pred HHHHc--C-------cEEEEECCCC--HHHHHHHHHHHHHCC--C-cEEEEEcCCHHHHHHHHHhCCEEEeCCCcC--Cc
Confidence 98754 2 8999999 64 235678888888654 3 466655 33 55788999999999999998 79
Q ss_pred CHHHHHHHHcCCCEEEcCCcccccccccC------ccEEEEcCCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHH
Q 001646 439 PEILVKALCFRKPIIAPDLSNIRKYVDDR------VNGYLFPKENIKALTHIILQVIT----NGKISPFARNIASIGRRS 508 (1038)
Q Consensus 439 PlvLLEAMA~GkPVIaTdvgGi~EiV~dG------~nGlLv~~~D~eaLAeAI~~LLs----Dg~l~elr~~mg~~are~ 508 (1038)
|++++|||+||+|||++++||+.|+|.++ .+|+++++.|+++|+++|.++++ + ++.+++|+.++.+
T Consensus 379 gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~---~~~~~~~~~~~~~- 454 (473)
T TIGR02095 379 GLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQD---PSLWEALQKNAMS- 454 (473)
T ss_pred HHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHhc-
Confidence 99999999999999999999999999988 89999999999999999999988 8 8888899888753
Q ss_pred HHhhCHHHHHHHHHHHHHHh
Q 001646 509 VKNLMALETIEGYAMLLENV 528 (1038)
Q Consensus 509 ak~Fs~e~ia~~Y~~Lye~v 528 (1038)
++|+|++++++|.++|+++
T Consensus 455 -~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 455 -QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred -cCCCcHHHHHHHHHHHHhC
Confidence 6799999999999999863
No 24
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.98 E-value=1e-29 Score=276.17 Aligned_cols=332 Identities=20% Similarity=0.254 Sum_probs=248.8
Q ss_pred eEEEEcCCCC-CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEE------------cccchhHHHHhh
Q 001646 146 QLALVFPDLL-IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAI------------LQTGREKASFVN 212 (1038)
Q Consensus 146 rIaiV~~~L~-iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~------------l~~~rkl~~lI~ 212 (1038)
||+++++.+. .||.++.+..+++.|.+.||+|++++.............++.+.. ......+...++
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLK 80 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccchHHHHHhhc
Confidence 5889999888 999999999999999999999999998765311111111222222 122244566677
Q ss_pred hcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcccccc
Q 001646 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMY 292 (1038)
Q Consensus 213 ~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~viy 292 (1038)
..+||+||++.......+..+. ...+|++.+.|+........... ....+..+..++.+++.+.......
T Consensus 81 ~~~~d~i~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~ii~~s~~~~~~~ 150 (348)
T cd03820 81 NNKPDVVISFLTSLLTFLASLG---LKIVKLIVSEHNSPDAYKKRLRR-------LLLRRLLYRRADAVVVLTEEDRALY 150 (348)
T ss_pred ccCCCEEEEcCchHHHHHHHHh---hccccEEEecCCCccchhhhhHH-------HHHHHHHHhcCCEEEEeCHHHHHHh
Confidence 7899999999977322222222 11259999999733221100000 0023345566777776665543333
Q ss_pred ccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCC
Q 001646 293 SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (1038)
Q Consensus 293 n~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~ 372 (1038)
......++.++|+ +++...+... ...+.+.++++| ++.+. ||++.+++|+..+.+..++
T Consensus 151 ~~~~~~~~~vi~~-~~~~~~~~~~-------------~~~~~~~i~~~g-~~~~~---K~~~~l~~~~~~l~~~~~~--- 209 (348)
T cd03820 151 YKKFNKNVVVIPN-PLPFPPEEPS-------------SDLKSKRILAVG-RLVPQ---KGFDLLIEAWAKIAKKHPD--- 209 (348)
T ss_pred hccCCCCeEEecC-CcChhhcccc-------------CCCCCcEEEEEE-eeccc---cCHHHHHHHHHHHHhcCCC---
Confidence 3445578888984 6665221110 235567899999 66666 9999999999999887777
Q ss_pred CCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCC
Q 001646 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP 451 (1038)
Q Consensus 373 ~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkP 451 (1038)
++|+|+| |+.. ..++++++++++.+ +|.+.|..+++..+|+.||++|+||..| |||++++|||+||+|
T Consensus 210 ----~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~i~ps~~e--~~~~~~~Ea~a~G~P 278 (348)
T cd03820 210 ----WKLRIVGDGPER----EALEALIKELGLED-RVILLGFTKNIEEYYAKASIFVLTSRFE--GFPMVLLEAMAFGLP 278 (348)
T ss_pred ----eEEEEEeCCCCH----HHHHHHHHHcCCCC-eEEEcCCcchHHHHHHhCCEEEeCcccc--ccCHHHHHHHHcCCC
Confidence 9999999 6654 67788889999988 9999999899999999999999999998 799999999999999
Q ss_pred EEEcCCcc-cccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 001646 452 IIAPDLSN-IRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (1038)
Q Consensus 452 VIaTdvgG-i~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~ 522 (1038)
||+++.++ ..+++.++.+|+++++.|+++++++|.++++| ++.+++|++++++.+++|+|++++++|.
T Consensus 279 vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 279 VISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMED---EELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred EEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 99999765 56677777799999999999999999999999 9999999999988889999999999885
No 25
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.97 E-value=1.1e-29 Score=309.44 Aligned_cols=359 Identities=11% Similarity=0.089 Sum_probs=251.0
Q ss_pred CceEEEEcCCC-----------CCChHHHHHHHHHHHH--------HHcCC----eEEEEEcCCCcch---------hhh
Q 001646 144 KPQLALVFPDL-----------LIDPQQLQMVTIAIAL--------REIGY----AIQVYSLEDGRAH---------EVW 191 (1038)
Q Consensus 144 ~prIaiV~~~L-----------~iGGae~~v~~LAkaL--------~k~G~----eV~V~t~~~g~~~---------~~~ 191 (1038)
..+|++|..+. ..||+.+++..+|++| +.+|+ +|.|+|-...+.. ...
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccccc
Confidence 36777777654 2699999999999985 68999 7779987543211 111
Q ss_pred hhcCceEEEcccch------------------------hHHHHhh-h--cCCcEEEEcCCchhHHHHHHHhCCCCCCCEE
Q 001646 192 RNIGVPVAILQTGR------------------------EKASFVN-W--LNYDGILVNSLEAKVVISNIMQEPFKSLPLV 244 (1038)
Q Consensus 192 e~~gI~v~~l~~~r------------------------kl~~lI~-~--~kpDIVhvhs~~~~~~la~La~~~~~gIPvI 244 (1038)
..-++.+..+++.. .+...+. . .+||+||+|.+.+ +.++.++. ...++|.+
T Consensus 335 ~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~-glva~lla-~~lgVP~v 412 (784)
T TIGR02470 335 GTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDG-NLVASLLA-RKLGVTQC 412 (784)
T ss_pred CCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCch-HHHHHHHH-HhcCCCEE
Confidence 11233343433221 1111111 1 3699999999988 46666664 47789999
Q ss_pred EEEeCchhHHh---------H-HHhhhhchhHHHHHHHHHHHhcceEeccCCc----------------------ccccc
Q 001646 245 WTIHEGTLATR---------A-RNYASSGQLELLNDWKKVFNRATVVVFPDYV----------------------LPMMY 292 (1038)
Q Consensus 245 ~tiHg~~L~~~---------l-ek~~~~~~d~lIs~~~~~~~~a~~vvfps~~----------------------l~viy 292 (1038)
.|.|.-..... . .++.. ... +..-....+.++.++..+.. +.-+.
T Consensus 413 ~t~HsL~~~K~~~~g~~~~~~e~~~~~--~~r-~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vv 489 (784)
T TIGR02470 413 TIAHALEKTKYPDSDIYWQEFEDKYHF--SCQ-FTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVV 489 (784)
T ss_pred EECCcchhhcccccccccccchhHHHh--hhh-hhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeee
Confidence 99996211100 0 00000 000 11111234445555444321 11223
Q ss_pred ccCC--CCCEEEcCCCCCCccccccccchhh----------------HHHHHhhCC--CCCCEEEEEEeccccccccccc
Q 001646 293 SAFD--AGNYYVIPGSPAKAWEADTNMDLYN----------------DTVRVKMGF--KPDDLVIAIVGTQFMYRGLWLE 352 (1038)
Q Consensus 293 n~vd--~~ki~VIPgsgVD~~~f~~~~~~~k----------------~~lReklgi--~~d~~vIL~VGsrl~~~KGiKg 352 (1038)
++++ ..++.+||+ |+|...|.++....+ ...++.+|+ ++++++|+++| |+.+. ||
T Consensus 490 nGid~~~~Ki~VVpP-GVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VG-RL~~~---KG 564 (784)
T TIGR02470 490 HGIDVFDPKFNIVSP-GADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMA-RLDRV---KN 564 (784)
T ss_pred cCccCCcCCeEEECC-CcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEe-CCCcc---CC
Confidence 4443 478899984 899876666554321 122456675 56788999999 88888 89
Q ss_pred HHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCC---------CchHHHHHHHHHHcCCCCceEEEccCh---hhHHHH
Q 001646 353 HALILRALLPLFSEVSVENESNSPIKVMILSGDST---------SNYSVVIEAIAHNLHYPLGVVKHMAAE---GDVDSV 420 (1038)
Q Consensus 353 ldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~---------e~Y~~~LeeLa~qLgL~d~~V~flG~~---edV~~l 420 (1038)
++.|++|+..+....++ ++|+|+||... ..+...++++++++++.+ +|.|+|.. .++.++
T Consensus 565 id~LIeA~~~l~~l~~~-------~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g-~V~flG~~~~~~~~~el 636 (784)
T TIGR02470 565 LTGLVECYGRSPKLREL-------VNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHG-QIRWIGAQLNRVRNGEL 636 (784)
T ss_pred HHHHHHHHHHhHhhCCC-------eEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCC-eEEEccCcCCcccHHHH
Confidence 99999999887543334 89999995321 124567888999999998 99999964 455566
Q ss_pred HH----hcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH----HcC
Q 001646 421 LN----TADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI----TNG 492 (1038)
Q Consensus 421 La----aADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LL----sDg 492 (1038)
|. .+|+||+||.+| +||++++||||||+|||+|+.||++|+|.+|.+|+++++.|+++++++|.+++ .|
T Consensus 637 yr~iAd~adVfV~PS~~E--pFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~d- 713 (784)
T TIGR02470 637 YRYIADTKGIFVQPALYE--AFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDED- 713 (784)
T ss_pred HHHhhccCcEEEECCccc--CCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC-
Confidence 54 347999999999 79999999999999999999999999999999999999999999999999886 58
Q ss_pred CCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH
Q 001646 493 KISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (1038)
Q Consensus 493 ~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Ly 525 (1038)
++.+++|+.+|++.+ ++|+|+.+++++.++.
T Consensus 714 --p~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 714 --PSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred --HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 889999999999998 7799999999999886
No 26
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.97 E-value=5.7e-30 Score=289.79 Aligned_cols=347 Identities=17% Similarity=0.171 Sum_probs=250.2
Q ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchh--hhhhcCceEEEcccc------------------hhHHHHhhh
Q 001646 154 LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE--VWRNIGVPVAILQTG------------------REKASFVNW 213 (1038)
Q Consensus 154 L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~--~~e~~gI~v~~l~~~------------------rkl~~lI~~ 213 (1038)
...||++.++.++++.|.++||+|+|++....+... .....++.+..++.. ..+...+..
T Consensus 18 ~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (398)
T cd03800 18 ADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRR 97 (398)
T ss_pred CCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHh
Confidence 347999999999999999999999999875432111 111223333332210 112223344
Q ss_pred c--CCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHh--HHHhhhhchhHHHHHHHHHHHhcceEeccCCcc-
Q 001646 214 L--NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR--ARNYASSGQLELLNDWKKVFNRATVVVFPDYVL- 288 (1038)
Q Consensus 214 ~--kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~--lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l- 288 (1038)
. +||+||+|.... +.....+. +..++|+|++.|+...... ...................+..++.+++++...
T Consensus 98 ~~~~~Div~~~~~~~-~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 175 (398)
T cd03800 98 EGGRPDLIHAHYWDS-GLVALLLA-RRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEA 175 (398)
T ss_pred cCCCccEEEEecCcc-chHHHHHH-hhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHH
Confidence 4 999999998765 34444443 3568999999997221100 000000000111122334666788777776542
Q ss_pred -cccc-ccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhh
Q 001646 289 -PMMY-SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE 366 (1038)
Q Consensus 289 -~viy-n~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k 366 (1038)
.... ...+..++.+||+ |+|...+..... ....+..++.++++++|+++| ++.+. ||++.+++|+..+.++
T Consensus 176 ~~~~~~~~~~~~~~~vi~n-g~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~g-r~~~~---k~~~~ll~a~~~l~~~ 248 (398)
T cd03800 176 EELYSLYGAYPRRIRVVPP-GVDLERFTPYGR--AEARRARLLRDPDKPRILAVG-RLDPR---KGIDTLIRAYAELPEL 248 (398)
T ss_pred HHHHHHccccccccEEECC-CCCccceecccc--hhhHHHhhccCCCCcEEEEEc-ccccc---cCHHHHHHHHHHHHHh
Confidence 1111 1223456888884 777643332221 112255566777888999999 77776 8999999999999887
Q ss_pred cccCCCCCCCEEEEEEe-CCCC--CchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHH
Q 001646 367 VSVENESNSPIKVMILS-GDST--SNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (1038)
Q Consensus 367 ~p~~~~~~~~vkLVIVG-G~~~--e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlv 441 (1038)
.++ ++|+|+| |... ..+...++.+++++++.+ +|.|+|++ +++..+|+.||++|+||..| |||++
T Consensus 249 ~~~-------~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~adi~l~ps~~e--~~~~~ 318 (398)
T cd03800 249 RER-------ANLVIVGGPRDDILAMDEEELRELARELGVID-RVDFPGRVSREDLPALYRAADVFVNPALYE--PFGLT 318 (398)
T ss_pred CCC-------eEEEEEECCCCcchhhhhHHHHHHHHhcCCCc-eEEEeccCCHHHHHHHHHhCCEEEeccccc--ccCcH
Confidence 777 9999999 4432 223456788899999988 89999986 78999999999999999998 79999
Q ss_pred HHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHH
Q 001646 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (1038)
Q Consensus 442 LLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~ 520 (1038)
++|||++|+|||+++.+|..|++.++.+|++++++|+++++++|.+++++ ++.+++|+.++++.+ ++|+|+.++++
T Consensus 319 l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~~~~~s~~~~~~~ 395 (398)
T cd03800 319 ALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTD---PALRRRLSRAGLRRARARYTWERVAAR 395 (398)
T ss_pred HHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999 77999999998
Q ss_pred HH
Q 001646 521 YA 522 (1038)
Q Consensus 521 Y~ 522 (1038)
|.
T Consensus 396 ~~ 397 (398)
T cd03800 396 LL 397 (398)
T ss_pred Hh
Confidence 85
No 27
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=9e-30 Score=299.03 Aligned_cols=345 Identities=13% Similarity=0.115 Sum_probs=241.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHH----HHcCC--------eEEEEEcCCCc------chhhhhhcCceEEEccc----
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIAL----REIGY--------AIQVYSLEDGR------AHEVWRNIGVPVAILQT---- 203 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL----~k~G~--------eV~V~t~~~g~------~~~~~e~~gI~v~~l~~---- 203 (1038)
+++++.+.++.||+|+++.++|-.+ ++.|- .|+++|-+-.+ ........++++..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKITGN 242 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccchh
Confidence 4899999999999999999555554 44443 56676654311 11112223444322210
Q ss_pred --------------------------chhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEE-EeCch--hHH
Q 001646 204 --------------------------GREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWT-IHEGT--LAT 254 (1038)
Q Consensus 204 --------------------------~rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~t-iHg~~--L~~ 254 (1038)
...+..+++..+||+||+|...+. .++.++.. ..++|++++ .|+.. ...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~-l~g~laA~-lagvpviv~~~h~~~~~~~~ 320 (578)
T PRK15490 243 LFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGAC-LMIALAAL-IAGVPRIQLGLRGLPPVVRK 320 (578)
T ss_pred hhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccH-HHHHHHHH-hcCCCEEEEeecccCCcchh
Confidence 012334467789999999987762 44554433 457898654 56411 110
Q ss_pred h-H-HHhh--------hhchhHHHHHHHHHHHhcceEeccCCccccccccCCCCCEEEcCCCCCCccccccccchhhHHH
Q 001646 255 R-A-RNYA--------SSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTV 324 (1038)
Q Consensus 255 ~-l-ek~~--------~~~~d~lIs~~~~~~~~a~~vvfps~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~l 324 (1038)
. + .++. ....+ ++..+...... ..-+-.++.+++.+|+| |+|...|.+.... ....
T Consensus 321 r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~-----------l~~~lgip~~KI~VIyN-GVD~~rf~p~~~~-~~~~ 386 (578)
T PRK15490 321 RLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRH-----------YADWLKLEAKHFQVVYN-GVLPPSTEPSSEV-PHKI 386 (578)
T ss_pred hHHHHHHHHhhhhceeEecch-hhhccHHHHHH-----------HHHHhCCCHHHEEEEeC-CcchhhcCccchh-hHHH
Confidence 0 0 0000 00001 11111110000 00011356788999995 8887544432211 1122
Q ss_pred HH--hhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHc
Q 001646 325 RV--KMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNL 401 (1038)
Q Consensus 325 Re--klgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qL 401 (1038)
+. ..+++++.++|+++| ++..+ |++..+++|+..+.++.|+ ++|+|+| |+.. +.++++++++
T Consensus 387 r~~~~~~l~~~~~vIg~Vg-Rl~~~---Kg~~~LI~A~a~llk~~pd-------irLvIVGdG~~~----eeLk~la~el 451 (578)
T PRK15490 387 WQQFTQKTQDADTTIGGVF-RFVGD---KNPFAWIDFAARYLQHHPA-------TRFVLVGDGDLR----AEAQKRAEQL 451 (578)
T ss_pred HHHhhhccCCCCcEEEEEE-EEehh---cCHHHHHHHHHHHHhHCCC-------eEEEEEeCchhH----HHHHHHHHHc
Confidence 33 234556677899999 77777 8999999999998887777 9999999 7765 7899999999
Q ss_pred CCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHH
Q 001646 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL 481 (1038)
Q Consensus 402 gL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaL 481 (1038)
++.+ +|.|+|+.+++..+|+.+|+||+||.+| |||++++||||||+|||+|+.||.+|+|.+|.+|+++++.|++++
T Consensus 452 gL~d-~V~FlG~~~Dv~~~LaaADVfVlPS~~E--Gfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~~D~~aL 528 (578)
T PRK15490 452 GILE-RILFVGASRDVGYWLQKMNVFILFSRYE--GLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDDAQTVNL 528 (578)
T ss_pred CCCC-cEEECCChhhHHHHHHhCCEEEEccccc--CccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEECCCChhhH
Confidence 9988 8999999999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred HHHH---HHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHH
Q 001646 482 THII---LQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN 527 (1038)
Q Consensus 482 AeAI---~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye~ 527 (1038)
++++ ..+.++ ......|+.+|++.+ ++|+++.++++|.++|.+
T Consensus 529 a~ai~lA~aL~~l---l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 529 DQACRYAEKLVNL---WRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 8887 445555 555557999999999 669999999999999975
No 28
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.97 E-value=6.9e-30 Score=293.61 Aligned_cols=347 Identities=15% Similarity=0.129 Sum_probs=237.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccch--------------------
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR-------------------- 205 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~r-------------------- 205 (1038)
||+||++++.. +...+|++|.++||+|+|++..+...... |+++..+....
T Consensus 1 ~il~~~~~~p~-----~~~~la~~L~~~G~~v~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T cd03818 1 RILFVHQNFPG-----QFRHLAPALAAQGHEVVFLTEPNAAPPPG----GVRVVRYRPPRGPTSGTHPYLREFEEAVLRG 71 (396)
T ss_pred CEEEECCCCch-----hHHHHHHHHHHCCCEEEEEecCCCCCCCC----CeeEEEecCCCCCCCCCCccchhHHHHHHHH
Confidence 57888888651 35679999999999999999877543221 45554443220
Q ss_pred -hH----HHH-hhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEe------CchhH-H--hHHHhh-hhchhHHHH
Q 001646 206 -EK----ASF-VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIH------EGTLA-T--RARNYA-SSGQLELLN 269 (1038)
Q Consensus 206 -kl----~~l-I~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiH------g~~L~-~--~lek~~-~~~~d~lIs 269 (1038)
.. ..+ .+..+||+||+|...+.+. ++...+.++|+|.+.| +.... . ...... .........
T Consensus 72 ~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~---~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (396)
T cd03818 72 QAVARALLALRAKGFRPDVIVAHPGWGETL---FLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNA 148 (396)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccchhh---hHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhh
Confidence 00 111 1235799999998665322 2323356788876553 31110 0 000000 000000011
Q ss_pred HHHHHHHhcceEeccCCccccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccc
Q 001646 270 DWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGL 349 (1038)
Q Consensus 270 ~~~~~~~~a~~vvfps~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KG 349 (1038)
.....+..++.++.++....-.......+++.+||+ |+|...+.+.... ....+....+.+++++|+++|+.+.+.
T Consensus 149 ~~~~~~~~ad~vi~~s~~~~~~~~~~~~~ki~vI~n-gvd~~~f~~~~~~-~~~~~~~~~~~~~~~~i~~vgR~l~~~-- 224 (396)
T cd03818 149 LILLALAQADAGVSPTRWQRSTFPAELRSRISVIHD-GIDTDRLRPDPQA-RLRLPNGRVLTPGDEVITFVARNLEPY-- 224 (396)
T ss_pred HhHHHHHhCCEEECCCHHHHhhCcHhhccceEEeCC-CccccccCCCchh-hhcccccccCCCCCeEEEEECCCcccc--
Confidence 123456778888777655222211112368899995 8887554432221 111222333456788999999447777
Q ss_pred cccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCC------CchHHHHHHHHHHcCC---CCceEEEccCh--hhHH
Q 001646 350 WLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST------SNYSVVIEAIAHNLHY---PLGVVKHMAAE--GDVD 418 (1038)
Q Consensus 350 iKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~------e~Y~~~LeeLa~qLgL---~d~~V~flG~~--edV~ 418 (1038)
||++.+++|+..+.++.|+ ++|+|+|+... +.-....+++.++++. .+ +|.|+|++ +++.
T Consensus 225 -Kg~~~ll~a~~~l~~~~~~-------~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~V~f~G~v~~~~~~ 295 (396)
T cd03818 225 -RGFHVFMRALPRLLRARPD-------ARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLS-RVHFLGRVPYDQYL 295 (396)
T ss_pred -cCHHHHHHHHHHHHHHCCC-------cEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcc-eEEEeCCCCHHHHH
Confidence 9999999999999888887 99999994210 0001123334444432 34 79999987 7899
Q ss_pred HHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHH
Q 001646 419 SVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFA 498 (1038)
Q Consensus 419 ~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr 498 (1038)
.+|+.||++|+||..| |+|++++||||||+|||+|+.||++|++.++.+|++++++|+++++++|.+++++ ++.+
T Consensus 296 ~~l~~adv~v~~s~~e--~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~---~~~~ 370 (396)
T cd03818 296 ALLQVSDVHVYLTYPF--VLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDD---PARR 370 (396)
T ss_pred HHHHhCcEEEEcCccc--ccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhC---HHHH
Confidence 9999999999999988 7999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHh-hCHHHHHHHHH
Q 001646 499 RNIASIGRRSVKN-LMALETIEGYA 522 (1038)
Q Consensus 499 ~~mg~~are~ak~-Fs~e~ia~~Y~ 522 (1038)
.+|+++|++.+++ |+|+.++++|.
T Consensus 371 ~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 371 ARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999955 99999999885
No 29
>PRK14099 glycogen synthase; Provisional
Probab=99.97 E-value=9.3e-30 Score=301.40 Aligned_cols=362 Identities=14% Similarity=0.122 Sum_probs=255.8
Q ss_pred CCceEEEEcCCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh---------hh-------------hcCc
Q 001646 143 RKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV---------WR-------------NIGV 196 (1038)
Q Consensus 143 R~prIaiV~~~L----~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~---------~e-------------~~gI 196 (1038)
++.+|++|...+ ..||..-++-.|.++|+++||+|.|+.+..+..... .. ..|+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGGL 81 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCCc
Confidence 568899988876 479999999999999999999999999854322100 00 0123
Q ss_pred eEEEccc----------c---------hh---HH-------HHh----hhcCCcEEEEcCCchhHHHHHHHhC-CCCCCC
Q 001646 197 PVAILQT----------G---------RE---KA-------SFV----NWLNYDGILVNSLEAKVVISNIMQE-PFKSLP 242 (1038)
Q Consensus 197 ~v~~l~~----------~---------rk---l~-------~lI----~~~kpDIVhvhs~~~~~~la~La~~-~~~gIP 242 (1038)
+++.+.. + .. +. .++ ...+|||||+|.+.+ +++..++.. ...++|
T Consensus 82 ~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~-~l~~~~l~~~~~~~~~ 160 (485)
T PRK14099 82 DLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQA-GLAPAYLHYSGRPAPG 160 (485)
T ss_pred eEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHH-HHHHHHHHhCCCCCCC
Confidence 3332210 0 00 00 011 135899999999887 355554432 234689
Q ss_pred EEEEEeCchhHHh-----HHHhhhh---c-hh-----HHHHHHHHHHHhcceEeccCCcc--ccc--ccc--------CC
Q 001646 243 LVWTIHEGTLATR-----ARNYASS---G-QL-----ELLNDWKKVFNRATVVVFPDYVL--PMM--YSA--------FD 296 (1038)
Q Consensus 243 vI~tiHg~~L~~~-----lek~~~~---~-~d-----~lIs~~~~~~~~a~~vvfps~~l--~vi--yn~--------vd 296 (1038)
+|+|+|+...... ....... . .. ..+...+..+..++.++..+... .+. +.+ ..
T Consensus 161 ~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~ 240 (485)
T PRK14099 161 TVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQR 240 (485)
T ss_pred EEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhh
Confidence 9999998322110 1100000 0 00 00112344566777766655441 111 111 13
Q ss_pred CCCEEEcCCCCCCccccccccch----------------hhHHHHHhhCCCC--CCEEEEEEecccccccccccHHHHHH
Q 001646 297 AGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILR 358 (1038)
Q Consensus 297 ~~ki~VIPgsgVD~~~f~~~~~~----------------~k~~lReklgi~~--d~~vIL~VGsrl~~~KGiKgldlLLe 358 (1038)
.+++.+|+| |+|...+.+.... .+..+++++|++. +.++++++| |+.++ ||++++++
T Consensus 241 ~~ki~vI~N-GID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~Vg-RL~~~---KG~d~Li~ 315 (485)
T PRK14099 241 ADRLSGILN-GIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVIS-RLSWQ---KGLDLLLE 315 (485)
T ss_pred CCCeEEEec-CCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEe-cCCcc---ccHHHHHH
Confidence 578999995 8887655443221 1456788899874 467888999 88887 99999999
Q ss_pred HHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHH-HhcCEEEEcccCCcC
Q 001646 359 ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVL-NTADVVIYGSFLEEQ 436 (1038)
Q Consensus 359 Al~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lL-aaADIfVlPS~~Eeq 436 (1038)
|+..+.+. + ++|+|+| |+. .+.+.+++++++++ .+ .+.++|+.+++..+| +.||+||+||.+|
T Consensus 316 A~~~l~~~--~-------~~lvivG~G~~--~~~~~l~~l~~~~~-~~-v~~~~G~~~~l~~~~~a~aDifv~PS~~E-- 380 (485)
T PRK14099 316 ALPTLLGE--G-------AQLALLGSGDA--ELEARFRAAAQAYP-GQ-IGVVIGYDEALAHLIQAGADALLVPSRFE-- 380 (485)
T ss_pred HHHHHHhc--C-------cEEEEEecCCH--HHHHHHHHHHHHCC-CC-EEEEeCCCHHHHHHHHhcCCEEEECCccC--
Confidence 99988753 3 8999999 653 35578888888664 22 347999988999987 5799999999998
Q ss_pred CcCHHHHHHHHcCCCEEEcCCcccccccccC---------ccEEEEcCCCHHHHHHHHHH---HHHcCCCcHHHHHHHHH
Q 001646 437 TFPEILVKALCFRKPIIAPDLSNIRKYVDDR---------VNGYLFPKENIKALTHIILQ---VITNGKISPFARNIASI 504 (1038)
Q Consensus 437 GFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG---------~nGlLv~~~D~eaLAeAI~~---LLsDg~l~elr~~mg~~ 504 (1038)
|||++++|||+||+|+|++++||++|+|.++ .+|+++++.|+++|+++|.+ +++| ++.+++|+.+
T Consensus 381 ~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d---~~~~~~l~~~ 457 (485)
T PRK14099 381 PCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFAD---PVAWRRLQRN 457 (485)
T ss_pred CCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 7999999999999988889999999999775 68999999999999999997 6778 8889999998
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhc
Q 001646 505 GRRSVKNLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 505 are~ak~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
|+ .++|+|+.++++|.++|++++.
T Consensus 458 ~~--~~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 458 GM--TTDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred hh--hhcCChHHHHHHHHHHHHHHHh
Confidence 86 4779999999999999999875
No 30
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=9.3e-30 Score=285.78 Aligned_cols=338 Identities=18% Similarity=0.181 Sum_probs=243.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc-hhhhhhcCceEEE--------------cccchhHHHHh
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA-HEVWRNIGVPVAI--------------LQTGREKASFV 211 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~-~~~~e~~gI~v~~--------------l~~~rkl~~lI 211 (1038)
|+++.++.. ++.+.++.++++.|. |+++.+++...... .......++.... ......+..++
T Consensus 2 ~~~~~~~~~-~~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (367)
T cd05844 2 VLIFRPLLL-APSETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGLRLGALRLLTGSAPQLRRLL 78 (367)
T ss_pred EEEEeCCCC-CCchHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHHHHHHHHhccccccHHHHHH
Confidence 455555554 448999999999995 77888887654322 2222222222110 11112233346
Q ss_pred hhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc--c
Q 001646 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--P 289 (1038)
Q Consensus 212 ~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l--~ 289 (1038)
+..+||+||+|..... .....+. +..++|+|++.|+.........................+..++.+++.+... .
T Consensus 79 ~~~~~dvvh~~~~~~~-~~~~~~~-~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 156 (367)
T cd05844 79 RRHRPDLVHAHFGFDG-VYALPLA-RRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIRDR 156 (367)
T ss_pred HhhCCCEEEeccCchH-HHHHHHH-HHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHHHH
Confidence 7789999999976652 3333332 3567999999997322111000000001111122333556777777766552 1
Q ss_pred cccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhccc
Q 001646 290 MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (1038)
Q Consensus 290 viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~ 369 (1038)
+...+++..++.++|+ |+|...+... ....+.++++++| ++.+. ||++.+++|+..+.+++++
T Consensus 157 ~~~~~~~~~~i~vi~~-g~d~~~~~~~------------~~~~~~~~i~~~G-~~~~~---K~~~~li~a~~~l~~~~~~ 219 (367)
T cd05844 157 LLALGFPPEKVHVHPI-GVDTAKFTPA------------TPARRPPRILFVG-RFVEK---KGPLLLLEAFARLARRVPE 219 (367)
T ss_pred HHHcCCCHHHeEEecC-CCCHHhcCCC------------CCCCCCcEEEEEE-eeccc---cChHHHHHHHHHHHHhCCC
Confidence 2223556678888984 7776333221 1123556899999 67776 8999999999999888777
Q ss_pred CCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccC------CcCCcCH
Q 001646 370 ENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL------EEQTFPE 440 (1038)
Q Consensus 370 ~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~------EeqGFPl 440 (1038)
++|+|+| |+.. +.++++++++++.+ +|.|+|++ +++..+|+.||++|+||.. | |||+
T Consensus 220 -------~~l~ivG~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E--~~~~ 285 (367)
T cd05844 220 -------VRLVIIGDGPLL----AALEALARALGLGG-RVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAE--GLPV 285 (367)
T ss_pred -------eEEEEEeCchHH----HHHHHHHHHcCCCC-eEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCcc--CCch
Confidence 9999999 6543 77889999999988 89999987 7899999999999999974 4 8999
Q ss_pred HHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHH
Q 001646 441 ILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIE 519 (1038)
Q Consensus 441 vLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~ 519 (1038)
+++|||+||+|||+++.++..|++.++.+|+++++.|+++++++|.+++++ ++.+.+|+.++++.+ ++|+|+.+++
T Consensus 286 ~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~~~~~s~~~~~~ 362 (367)
T cd05844 286 VLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLAD---PDLRARMGAAGRRRVEERFDLRRQTA 362 (367)
T ss_pred HHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999 6799999999
Q ss_pred HHHH
Q 001646 520 GYAM 523 (1038)
Q Consensus 520 ~Y~~ 523 (1038)
++.+
T Consensus 363 ~l~~ 366 (367)
T cd05844 363 KLEA 366 (367)
T ss_pred HHhc
Confidence 9865
No 31
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.97 E-value=4e-29 Score=272.79 Aligned_cols=339 Identities=17% Similarity=0.215 Sum_probs=243.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccc-------------hhHHHHhh
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG-------------REKASFVN 212 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~-------------rkl~~lI~ 212 (1038)
+|++|++. .||.+..+..+++.|.+.||+|++++....... .....++.+..++.. ..+.+.++
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE-ELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLLR 77 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc-ccccCCceEEeccccccccChHhHHHHHHHHHHHHH
Confidence 46777777 789999999999999999999999998764432 223344444443322 12344566
Q ss_pred hcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccc-cc
Q 001646 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP-MM 291 (1038)
Q Consensus 213 ~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~-vi 291 (1038)
..+||+||+++... ..+..+........+++++.|+............ .......+..+..++.+.+.+.... .+
T Consensus 78 ~~~~dvv~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 153 (359)
T cd03808 78 KERPDIVHTHTPKP-GILGRLAARLAGVPKVIYTVHGLGFVFTSGGLKR---RLYLLLERLALRFTDKVIFQNEDDRDLA 153 (359)
T ss_pred hcCCCEEEEccccc-hhHHHHHHHHcCCCCEEEEecCcchhhccchhHH---HHHHHHHHHHHhhccEEEEcCHHHHHHH
Confidence 78999999998765 3444544333456788888887322211110000 1111122334455666666554421 11
Q ss_pred -c-ccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhccc
Q 001646 292 -Y-SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (1038)
Q Consensus 292 -y-n~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~ 369 (1038)
. ...+..+..++++.+++...+..... . ..++.+.++++| ++.+. ||++.+++++..+.+++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~i~~~G-~~~~~---k~~~~li~~~~~l~~~~~~ 219 (359)
T cd03808 154 LKLGIIKKKKTVLIPGSGVDLDRFSPSPE---P-------IPEDDPVFLFVA-RLLKD---KGIDELLEAARILKAKGPN 219 (359)
T ss_pred HHhcCCCcCceEEecCCCCChhhcCcccc---c-------cCCCCcEEEEEe-ccccc---cCHHHHHHHHHHHHhcCCC
Confidence 1 11111334444445777633322111 0 245678999999 77777 8999999999999877777
Q ss_pred CCCCCCCEEEEEEe-CCCCCchHHHHHH-HHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHH
Q 001646 370 ENESNSPIKVMILS-GDSTSNYSVVIEA-IAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (1038)
Q Consensus 370 ~~~~~~~vkLVIVG-G~~~e~Y~~~Lee-La~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA 447 (1038)
++|+|+| |+.. ..... ++.+++..+ +|.++|+.+++.++|+.||++|+||..| |||++++|||+
T Consensus 220 -------~~l~i~G~~~~~----~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~i~ps~~e--~~~~~~~Ea~~ 285 (359)
T cd03808 220 -------VRLLLVGDGDEE----NPAAILEIEKLGLEG-RVEFLGFRDDVPELLAAADVFVLPSYRE--GLPRVLLEAMA 285 (359)
T ss_pred -------eEEEEEcCCCcc----hhhHHHHHHhcCCcc-eEEEeeccccHHHHHHhccEEEecCccc--CcchHHHHHHH
Confidence 9999999 6554 22222 356667777 8999999999999999999999999997 79999999999
Q ss_pred cCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHH
Q 001646 448 FRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (1038)
Q Consensus 448 ~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~ 522 (1038)
||+|||+++.++..+++.++.+|++++++|+++++++|..++.+ ++.+.+++.++++.+ ++|+++.+++.|.
T Consensus 286 ~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 286 MGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIED---PELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred cCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 999999999999996 7799999998875
No 32
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=2.8e-29 Score=277.37 Aligned_cols=347 Identities=19% Similarity=0.216 Sum_probs=248.8
Q ss_pred eEEEEcCCCC--CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh-hhcCce----------EEEcccchhHHHHhh
Q 001646 146 QLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW-RNIGVP----------VAILQTGREKASFVN 212 (1038)
Q Consensus 146 rIaiV~~~L~--iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~-e~~gI~----------v~~l~~~rkl~~lI~ 212 (1038)
||++|.+... .||.+..+..++++|.+.||+|++++.......... ....++ ...+.....+...++
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 4677776543 489999999999999999999999997653211100 000000 011122234555566
Q ss_pred hcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHH-HHHHHHHHHhcceEeccCCccccc
Q 001646 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLEL-LNDWKKVFNRATVVVFPDYVLPMM 291 (1038)
Q Consensus 213 ~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~l-Is~~~~~~~~a~~vvfps~~l~vi 291 (1038)
..+||+||+++........... .+..++|+++++|+... .............. ....+..+..++.+++++......
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~ 158 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRA-ARRLGIPVVTSYHTDFP-EYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADE 158 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHH-HHHcCCCEEEEEecChH-HHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHH
Confidence 7899999999776533333333 23567999999997322 11221111111111 122334556777777776653332
Q ss_pred cccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCC
Q 001646 292 YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVEN 371 (1038)
Q Consensus 292 yn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~ 371 (1038)
.......++.++++ |+|...+.+... ....+.+++ .++.++++++| ++... ||++.+++++..+.++ ++
T Consensus 159 ~~~~~~~~~~~~~~-g~~~~~~~~~~~--~~~~~~~~~-~~~~~~i~~~G-~~~~~---k~~~~~i~~~~~l~~~-~~-- 227 (364)
T cd03814 159 LRARGFRRVRLWPR-GVDTELFHPRRR--DEALRARLG-PPDRPVLLYVG-RLAPE---KNLEALLDADLPLRRR-PP-- 227 (364)
T ss_pred HhccCCCceeecCC-CccccccCcccc--cHHHHHHhC-CCCCeEEEEEe-ccccc---cCHHHHHHHHHHhhhc-CC--
Confidence 22333456777774 777643332211 233445555 55677899999 67666 8999999999999876 66
Q ss_pred CCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHc
Q 001646 372 ESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCF 448 (1038)
Q Consensus 372 ~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~ 448 (1038)
++|+|+| |+.. ..++ +..+ +|.++|+. +++.++|+.||++|+||..| |||++++|||||
T Consensus 228 -----~~l~i~G~~~~~----~~~~------~~~~-~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e--~~~~~~lEa~a~ 289 (364)
T cd03814 228 -----VRLVIVGDGPAR----ARLE------ARYP-NVHFLGFLDGEELAAAYASADVFVFPSRTE--TFGLVVLEAMAS 289 (364)
T ss_pred -----ceEEEEeCCchH----HHHh------ccCC-cEEEEeccCHHHHHHHHHhCCEEEECcccc--cCCcHHHHHHHc
Confidence 9999999 6553 3333 3445 79999954 88999999999999999988 799999999999
Q ss_pred CCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 001646 449 RKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLE 526 (1038)
Q Consensus 449 GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~Lye 526 (1038)
|+|||+++.++..+++.++.+|+++++.|+++++++|.++++| ++.+.+|++++++.+++|+|+++++++.++|+
T Consensus 290 g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 290 GLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLAD---PELRRRMAARARAEAERRSWEAFLDNLLEAYR 364 (364)
T ss_pred CCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHhhcCHHHHHHHHHHhhC
Confidence 9999999999999999998999999999999999999999999 99999999999999988999999999998873
No 33
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=3.6e-29 Score=277.17 Aligned_cols=350 Identities=19% Similarity=0.148 Sum_probs=246.0
Q ss_pred eEEEEcCCCC-CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhc--CceEEE---cccchhHHHHhhhcCCcEE
Q 001646 146 QLALVFPDLL-IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNI--GVPVAI---LQTGREKASFVNWLNYDGI 219 (1038)
Q Consensus 146 rIaiV~~~L~-iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~--gI~v~~---l~~~rkl~~lI~~~kpDIV 219 (1038)
||+||.+... .||.+.++..+++.|.+.||+|.+++............. ...... ......+...++..+||+|
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 80 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV 80 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence 5788888776 799999999999999999999999987653311111100 111111 1112234556777899999
Q ss_pred EEcCCchh--HHHHHHH--hCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccC-Ccccccccc
Q 001646 220 LVNSLEAK--VVISNIM--QEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPD-YVLPMMYSA 294 (1038)
Q Consensus 220 hvhs~~~~--~~la~La--~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps-~~l~viyn~ 294 (1038)
|++..... +.....+ ..+..++|+|+++|+...... . ..........+..++.+++.+ .........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-----~---~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 152 (366)
T cd03822 81 VIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEP-----R---PGDRALLRLLLRRADAVIVMSSELLRALLLR 152 (366)
T ss_pred EEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcccc-----c---hhhhHHHHHHHhcCCEEEEeeHHHHHHHHhh
Confidence 99873210 1111111 112467899999997411100 0 000112223445667666663 222222222
Q ss_pred CCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCC
Q 001646 295 FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (1038)
Q Consensus 295 vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~ 374 (1038)
....++.++|+ +++...+.... . .++.....+.++++++| ++.+. ||++.+++|+..+.+++++
T Consensus 153 ~~~~~~~~i~~-~~~~~~~~~~~---~---~~~~~~~~~~~~i~~~G-~~~~~---K~~~~ll~a~~~~~~~~~~----- 216 (366)
T cd03822 153 AYPEKIAVIPH-GVPDPPAEPPE---S---LKALGGLDGRPVLLTFG-LLRPY---KGLELLLEALPLLVAKHPD----- 216 (366)
T ss_pred cCCCcEEEeCC-CCcCcccCCch---h---hHhhcCCCCCeEEEEEe-eccCC---CCHHHHHHHHHHHHhhCCC-----
Confidence 22468889984 66653222111 1 13344556788999999 77777 8999999999999988777
Q ss_pred CCEEEEEEe-CCCCCc-hHHHHHHHHHHcCCCCceEEEccC-h--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcC
Q 001646 375 SPIKVMILS-GDSTSN-YSVVIEAIAHNLHYPLGVVKHMAA-E--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFR 449 (1038)
Q Consensus 375 ~~vkLVIVG-G~~~e~-Y~~~LeeLa~qLgL~d~~V~flG~-~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~G 449 (1038)
++|+|+| |..... ......++++++++.+ +|.|+|. . +++.++|+.||++++||..|.+|+|++++|||+||
T Consensus 217 --~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G 293 (366)
T cd03822 217 --VRLLVAGETHPDLERYRGEAYALAERLGLAD-RVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFG 293 (366)
T ss_pred --eEEEEeccCccchhhhhhhhHhHHHhcCCCC-cEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcC
Confidence 9999999 544311 0001013477889988 8999986 3 78999999999999999998557999999999999
Q ss_pred CCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 001646 450 KPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLE 526 (1038)
Q Consensus 450 kPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~Lye 526 (1038)
+|||+++.|+ .+.+.++.+|++++++|+++++++|..++++ ++.+.+|++++++.+++|+|++++++|.++|+
T Consensus 294 ~PvI~~~~~~-~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 366 (366)
T cd03822 294 KPVISTPVGH-AEEVLDGGTGLLVPPGDPAALAEAIRRLLAD---PELAQALRARAREYARAMSWERVAERYLRLLA 366 (366)
T ss_pred CCEEecCCCC-hheeeeCCCcEEEcCCCHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhC
Confidence 9999999999 7777778889999999999999999999999 99999999999999978999999999998873
No 34
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=6.4e-29 Score=273.90 Aligned_cols=352 Identities=18% Similarity=0.196 Sum_probs=251.1
Q ss_pred eEEEEcCCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEE------------EcccchhHHHHh
Q 001646 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVA------------ILQTGREKASFV 211 (1038)
Q Consensus 146 rIaiV~~~L--~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~------------~l~~~rkl~~lI 211 (1038)
||+++.... ..||.+..+..++++|.+.||+|++++..............+... .......+...+
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 466776654 468999999999999999999999999865432211111111110 011112233346
Q ss_pred hhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhH--HhHHHhhhhchhHHH-HHHHHHHHhcceEeccCCcc
Q 001646 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLA--TRARNYASSGQLELL-NDWKKVFNRATVVVFPDYVL 288 (1038)
Q Consensus 212 ~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~--~~lek~~~~~~d~lI-s~~~~~~~~a~~vvfps~~l 288 (1038)
...+||+||++++........... +..++|+++++|..... ............... ......+..++.+++.+...
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~ 159 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVA-RKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKI 159 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHH-HHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHH
Confidence 668999999998765433333333 35689999999963211 000000000001111 23344566788777766552
Q ss_pred ccc-cccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 001646 289 PMM-YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (1038)
Q Consensus 289 ~vi-yn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~ 367 (1038)
... .......++.++|+ |+|...+... .....+..++..+++++++++| ++.+. |+++.+++|+..+.++.
T Consensus 160 ~~~~~~~~~~~~~~vi~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~G-~~~~~---k~~~~l~~~~~~~~~~~ 231 (374)
T cd03817 160 ADLLREYGVKRPIEVIPT-GIDLDRFEPV---DGDDERRKLGIPEDEPVLLYVG-RLAKE---KNIDFLIRAFARLLKEE 231 (374)
T ss_pred HHHHHhcCCCCceEEcCC-ccchhccCcc---chhHHHHhcCCCCCCeEEEEEe-eeecc---cCHHHHHHHHHHHHHhC
Confidence 211 11112345788884 7776433322 2223356677778888999999 66666 89999999999998876
Q ss_pred ccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHH
Q 001646 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (1038)
Q Consensus 368 p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLE 444 (1038)
++ ++|+++| |+.. +.++++++++++.+ +|.++|++ +++..+|+.||++++||..| |+|++++|
T Consensus 232 ~~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e--~~~~~~~E 297 (374)
T cd03817 232 PD-------VKLVIVGDGPER----EELEELARELGLAD-RVIFTGFVPREELPDYYKAADLFVFASTTE--TQGLVLLE 297 (374)
T ss_pred CC-------eEEEEEeCCchH----HHHHHHHHHcCCCC-cEEEeccCChHHHHHHHHHcCEEEeccccc--CcChHHHH
Confidence 66 9999999 6554 77888888889888 89999987 78999999999999999988 79999999
Q ss_pred HHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 001646 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAML 524 (1038)
Q Consensus 445 AMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~L 524 (1038)
||+||+|||+++.++..+++.++.+|+++++.+. +++++|..++++ ++.+++|++++++.++++. .++.+.++
T Consensus 298 a~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 370 (374)
T cd03817 298 AMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDE-ALAEALLRLLQD---PELRRRLSKNAEESAEKFS---FAKKVEKL 370 (374)
T ss_pred HHHcCCcEEEeCCCChhhheecCceeEEeCCCCH-HHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 9999999999999999999999999999998877 999999999999 9999999999999997766 55666666
Q ss_pred HHH
Q 001646 525 LEN 527 (1038)
Q Consensus 525 ye~ 527 (1038)
|++
T Consensus 371 ~~~ 373 (374)
T cd03817 371 YEE 373 (374)
T ss_pred Hhc
Confidence 654
No 35
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.97 E-value=3.4e-29 Score=294.34 Aligned_cols=357 Identities=18% Similarity=0.171 Sum_probs=246.6
Q ss_pred eEEEEcCCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh--------------------------hhcC
Q 001646 146 QLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--------------------------RNIG 195 (1038)
Q Consensus 146 rIaiV~~~L----~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~--------------------------e~~g 195 (1038)
+|++|.+.+ ..||...++..|+++|+++||+|.|+++..+...... ..-|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 467777764 4799999999999999999999999997654322110 1124
Q ss_pred ceEEEcccch---------------------------hHHHHhhh--cCCcEEEEcCCchhHHHHHHHhCC-----CCCC
Q 001646 196 VPVAILQTGR---------------------------EKASFVNW--LNYDGILVNSLEAKVVISNIMQEP-----FKSL 241 (1038)
Q Consensus 196 I~v~~l~~~r---------------------------kl~~lI~~--~kpDIVhvhs~~~~~~la~La~~~-----~~gI 241 (1038)
++++.+.... ....++.. .+||+||+|.+.. +.+..++... +.++
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t-~~~~~~l~~~~~~~~~~~~ 159 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHT-GLVPALLKEKYADPFFKNI 159 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHH-HHHHHHHHHhhccccCCCC
Confidence 4444332211 01122333 6899999999887 3555444332 2578
Q ss_pred CEEEEEeCchhHHh-----HHHhhhhc----------hhHHHHHHHHHHHhcceEeccCCc-cccccc-----------c
Q 001646 242 PLVWTIHEGTLATR-----ARNYASSG----------QLELLNDWKKVFNRATVVVFPDYV-LPMMYS-----------A 294 (1038)
Q Consensus 242 PvI~tiHg~~L~~~-----lek~~~~~----------~d~lIs~~~~~~~~a~~vvfps~~-l~viyn-----------~ 294 (1038)
|+|+|+|+...... +....... ....+...+..+..++.+...+.. ...+.. .
T Consensus 160 ~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~ 239 (476)
T cd03791 160 KTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLR 239 (476)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHH
Confidence 99999998321110 11110000 001122334455666655544433 111111 1
Q ss_pred CCCCCEEEcCCCCCCccccccccch----------------hhHHHHHhhCCC--CCCEEEEEEecccccccccccHHHH
Q 001646 295 FDAGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFK--PDDLVIAIVGTQFMYRGLWLEHALI 356 (1038)
Q Consensus 295 vd~~ki~VIPgsgVD~~~f~~~~~~----------------~k~~lReklgi~--~d~~vIL~VGsrl~~~KGiKgldlL 356 (1038)
....++.+|+| |+|...+.+.... .+..+++++|++ ++.++|+++| ++.++ ||++++
T Consensus 240 ~~~~ki~~I~N-Gid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vG-rl~~~---Kg~~~l 314 (476)
T cd03791 240 ARAGKLSGILN-GIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVG-RLTEQ---KGIDLL 314 (476)
T ss_pred hccCCeEEEeC-CCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEe-ecccc---ccHHHH
Confidence 12468889985 7877554432211 145678888985 7888999999 78887 999999
Q ss_pred HHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEE-ccCh-hhHHHHHHhcCEEEEcccC
Q 001646 357 LRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKH-MAAE-GDVDSVLNTADVVIYGSFL 433 (1038)
Q Consensus 357 LeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~f-lG~~-edV~~lLaaADIfVlPS~~ 433 (1038)
++|+..+.++. ++|+|+| |.. .+.+.++++++++ .+ +|.+ .|+. +.+..+|+.||++|+||.+
T Consensus 315 i~a~~~l~~~~---------~~lvi~G~g~~--~~~~~~~~~~~~~--~~-~v~~~~~~~~~~~~~~~~~aDv~l~pS~~ 380 (476)
T cd03791 315 LEALPELLELG---------GQLVILGSGDP--EYEEALRELAARY--PG-RVAVLIGYDEALAHLIYAGADFFLMPSRF 380 (476)
T ss_pred HHHHHHHHHcC---------cEEEEEecCCH--HHHHHHHHHHHhC--CC-cEEEEEeCCHHHHHHHHHhCCEEECCCCC
Confidence 99999987642 7999999 633 3557778888765 33 4665 4555 4557899999999999999
Q ss_pred CcCCcCHHHHHHHHcCCCEEEcCCcccccccccCc------cEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001646 434 EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRV------NGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRR 507 (1038)
Q Consensus 434 EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~------nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are 507 (1038)
| +||++++|||+||+|||+++.||++|+|.++. +|+++++.|+++++++|.++++...-++.+.+|++++.+
T Consensus 381 E--~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~ 458 (476)
T cd03791 381 E--PCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMA 458 (476)
T ss_pred C--CCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc
Confidence 8 79999999999999999999999999999988 999999999999999999988631115666677766644
Q ss_pred HHHhhCHHHHHHHHHHHHH
Q 001646 508 SVKNLMALETIEGYAMLLE 526 (1038)
Q Consensus 508 ~ak~Fs~e~ia~~Y~~Lye 526 (1038)
+.|+|+.++++|.++|+
T Consensus 459 --~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 459 --QDFSWDRSAKEYLELYR 475 (476)
T ss_pred --cCCChHHHHHHHHHHHh
Confidence 46999999999999986
No 36
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=5.6e-29 Score=277.53 Aligned_cols=332 Identities=18% Similarity=0.211 Sum_probs=240.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCC
Q 001646 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (1038)
Q Consensus 145 prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~ 224 (1038)
++|+++......||+++++..+++.|.++||+|++++.... .+...++..++|+||+|..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~--------------------~~~~~~~~~~~diih~~~~ 60 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK--------------------ALISKIEIINADIVHLHWI 60 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc--------------------hhhhChhcccCCEEEEEcc
Confidence 37888988888899999999999999999999999997543 3344566789999999885
Q ss_pred chhHHHHHHHhCCCCCCCEEEEEeCchhH-------HhHHHh-------------hh-hchhHHHHHHHHHH-HhcceEe
Q 001646 225 EAKVVISNIMQEPFKSLPLVWTIHEGTLA-------TRARNY-------------AS-SGQLELLNDWKKVF-NRATVVV 282 (1038)
Q Consensus 225 ~~~~~la~La~~~~~gIPvI~tiHg~~L~-------~~lek~-------------~~-~~~d~lIs~~~~~~-~~a~~vv 282 (1038)
....+....+.....++|+|+++|+.... .....+ .. .....+.......+ .....++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (365)
T cd03825 61 HGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIV 140 (365)
T ss_pred ccCccCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEE
Confidence 54211111121111478999999972110 000000 00 00001111111122 1233344
Q ss_pred ccCCcc-ccccc--cCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEeccccc--ccccccHHHHH
Q 001646 283 FPDYVL-PMMYS--AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMY--RGLWLEHALIL 357 (1038)
Q Consensus 283 fps~~l-~viyn--~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~--~KGiKgldlLL 357 (1038)
.++... ..... .++..++.++|+ |+|...+. +..+...+..+++++++.+++++| +... . ||++.++
T Consensus 141 ~~s~~~~~~~~~~~~~~~~~~~vi~n-gi~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~---K~~~~ll 212 (365)
T cd03825 141 APSRWLADCARSSSLFKGIPIEVIPN-GIDTTIFR---PRDKREARKRLGLPADKKIILFGA-VGGTDPR---KGFDELI 212 (365)
T ss_pred ehhHHHHHHHHhccccCCCceEEeCC-CCcccccC---CCcHHHHHHHhCCCCCCeEEEEEe-cCCCccc---cCHHHHH
Confidence 444331 11111 245678899995 78774332 233455677888888887776666 4433 4 8999999
Q ss_pred HHHHHchhh-cccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChh---hHHHHHHhcCEEEEccc
Q 001646 358 RALLPLFSE-VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEG---DVDSVLNTADVVIYGSF 432 (1038)
Q Consensus 358 eAl~~L~~k-~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~e---dV~~lLaaADIfVlPS~ 432 (1038)
+|+..+.++ .++ ++++++| ++.. .. .++.. +|.++|+.. ++..+|+.||++++||.
T Consensus 213 ~a~~~l~~~~~~~-------~~~~i~G~~~~~----~~-------~~~~~-~v~~~g~~~~~~~~~~~~~~ad~~l~ps~ 273 (365)
T cd03825 213 EALKRLAERWKDD-------IELVVFGASDPE----IP-------PDLPF-PVHYLGSLNDDESLALIYSAADVFVVPSL 273 (365)
T ss_pred HHHHHhhhccCCC-------eEEEEeCCCchh----hh-------ccCCC-ceEecCCcCCHHHHHHHHHhCCEEEeccc
Confidence 999998765 445 9999999 5432 11 14555 799999874 68899999999999999
Q ss_pred CCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-Hh
Q 001646 433 LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KN 511 (1038)
Q Consensus 433 ~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~ 511 (1038)
.| |||++++|||+||+|||+++.+|..|++.++.+|++++..|+++++++|.+++++ ++.+.+|++++++.+ ++
T Consensus 274 ~e--~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~ 348 (365)
T cd03825 274 QE--NFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLAD---PDEREELGEAARELAENE 348 (365)
T ss_pred cc--cccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHh
Confidence 88 7999999999999999999999999999998899999999999999999999999 888999999999999 56
Q ss_pred hCHHHHHHHHHHHHHHh
Q 001646 512 LMALETIEGYAMLLENV 528 (1038)
Q Consensus 512 Fs~e~ia~~Y~~Lye~v 528 (1038)
|+++.++++|.++|+++
T Consensus 349 ~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 349 FDSRVQAKRYLSLYEEL 365 (365)
T ss_pred cCHHHHHHHHHHHHhhC
Confidence 99999999999999863
No 37
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.97 E-value=8.9e-29 Score=269.14 Aligned_cols=352 Identities=20% Similarity=0.257 Sum_probs=254.9
Q ss_pred eEEEEcCCCC--CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEE-------------EcccchhHHHH
Q 001646 146 QLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVA-------------ILQTGREKASF 210 (1038)
Q Consensus 146 rIaiV~~~L~--iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~-------------~l~~~rkl~~l 210 (1038)
||+++.+... .||.+..+..+++.|.+.||+|.+++.................. .......+...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 4677777653 38999999999999999999999999876442221111111110 00111233445
Q ss_pred hhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc-c
Q 001646 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-P 289 (1038)
Q Consensus 211 I~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l-~ 289 (1038)
+...++|+||++......... .. ....++|+++++|+......... ...............+..++.+++.+... .
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~-~~-~~~~~~~~i~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 157 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAA-LA-ARLLGIPLVLTVHGLEFGRPGNE-LGLLLKLARALERRALRRADRIIAVSEATRE 157 (374)
T ss_pred hhhcCCcEEEEechhHHHHHH-HH-HHhcCCcEEEEeccchhhccccc-hhHHHHHHHHHHHHHHHhCCEEEEecHHHHH
Confidence 666799999999988742322 23 24667999999998332211000 00000111112233556667666665542 2
Q ss_pred cccccCC--CCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 001646 290 MMYSAFD--AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (1038)
Q Consensus 290 viyn~vd--~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~ 367 (1038)
.+..... ..++.++|+ |++...+.... ...+.......+.+.++++| ++... ||++.+++|+..+.+++
T Consensus 158 ~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~g-~~~~~---k~~~~~i~~~~~~~~~~ 228 (374)
T cd03801 158 ELRELGGVPPEKITVIPN-GVDTERFRPAP----RAARRRLGIPEDEPVILFVG-RLVPR---KGVDLLLEALAKLRKEY 228 (374)
T ss_pred HHHhcCCCCCCcEEEecC-cccccccCccc----hHHHhhcCCcCCCeEEEEec-chhhh---cCHHHHHHHHHHHhhhc
Confidence 2222222 257888884 66663332211 22334455667788999999 66666 89999999999998877
Q ss_pred ccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHH
Q 001646 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (1038)
Q Consensus 368 p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLE 444 (1038)
++ ++|+|+| |+. ...+++++++++..+ +|.++|+. +++.++|+.||++++|+..| |+|++++|
T Consensus 229 ~~-------~~l~i~G~~~~----~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~di~i~~~~~~--~~~~~~~E 294 (374)
T cd03801 229 PD-------VRLVIVGDGPL----REELEALAAELGLGD-RVTFLGFVPDEDLPALYAAADVFVLPSLYE--GFGLVLLE 294 (374)
T ss_pred CC-------eEEEEEeCcHH----HHHHHHHHHHhCCCc-ceEEEeccChhhHHHHHHhcCEEEecchhc--cccchHHH
Confidence 77 9999999 444 377788888888888 89999988 89999999999999999997 79999999
Q ss_pred HHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHH
Q 001646 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAM 523 (1038)
Q Consensus 445 AMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~ 523 (1038)
||++|+|||+++.++..+++.++.+|+++++.|+++++++|.+++++ ++.+.+++.++++.+ ++|+|+++++.+.+
T Consensus 295 a~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (374)
T cd03801 295 AMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDD---PELRRRLGEAARERVAERFSWDRVAARTEE 371 (374)
T ss_pred HHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999989999999999999999999999999 999999999999766 77999999999998
Q ss_pred HHH
Q 001646 524 LLE 526 (1038)
Q Consensus 524 Lye 526 (1038)
+|+
T Consensus 372 ~~~ 374 (374)
T cd03801 372 VYY 374 (374)
T ss_pred hhC
Confidence 763
No 38
>PLN00142 sucrose synthase
Probab=99.97 E-value=5e-29 Score=303.92 Aligned_cols=355 Identities=11% Similarity=0.067 Sum_probs=240.1
Q ss_pred cCCCCCChHHHHHHHHH--------HHHHHcCCeEE----EEEcCCCcc-----hhhhhh----cCceEEEcccchh---
Q 001646 151 FPDLLIDPQQLQMVTIA--------IALREIGYAIQ----VYSLEDGRA-----HEVWRN----IGVPVAILQTGRE--- 206 (1038)
Q Consensus 151 ~~~L~iGGae~~v~~LA--------kaL~k~G~eV~----V~t~~~g~~-----~~~~e~----~gI~v~~l~~~rk--- 206 (1038)
++....||..+++..+| +.|+.+|++|. |+|-...+. ....+. -++.+..+++...
T Consensus 297 lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~ 376 (815)
T PLN00142 297 LGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGI 376 (815)
T ss_pred CCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccc
Confidence 44456789988997655 66778899774 877633221 111111 1333434343220
Q ss_pred --------------------HHHHh-hh--cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCch--------h---
Q 001646 207 --------------------KASFV-NW--LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT--------L--- 252 (1038)
Q Consensus 207 --------------------l~~lI-~~--~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~--------L--- 252 (1038)
+...+ .. ..||+||.|.+.+ +.++.++.. ..++|.+.|.|.-. .
T Consensus 377 l~~~i~ke~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwds-g~vA~~La~-~lgVP~v~T~HsL~k~K~~~~~~~~~ 454 (815)
T PLN00142 377 LRKWISRFDVWPYLETFAEDAASEILAELQGKPDLIIGNYSDG-NLVASLLAH-KLGVTQCTIAHALEKTKYPDSDIYWK 454 (815)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccH-HHHHHHHHH-HhCCCEEEEcccchhhhccccCCccc
Confidence 11111 11 3599999999988 466666644 67899999999510 0
Q ss_pred ----H-H-----hHHHhhhhchhHHHHHHHHHHH-hcceE-------eccCCccccccccCC--CCCEEEcCCCCCCccc
Q 001646 253 ----A-T-----RARNYASSGQLELLNDWKKVFN-RATVV-------VFPDYVLPMMYSAFD--AGNYYVIPGSPAKAWE 312 (1038)
Q Consensus 253 ----~-~-----~lek~~~~~~d~lIs~~~~~~~-~a~~v-------vfps~~l~viyn~vd--~~ki~VIPgsgVD~~~ 312 (1038)
. + ..+......++.+++....-.. ..+.+ .|.-..+..+.++++ ..++.+|| +|+|...
T Consensus 455 ~~e~~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVp-pGvD~~~ 533 (815)
T PLN00142 455 KFDDKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVS-PGADMSI 533 (815)
T ss_pred ccchhhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEEC-CCCChhh
Confidence 0 0 0123333334444433221110 00000 000000122334443 45888898 4888866
Q ss_pred cccccchh-h---------------HHHHHhhCC--CCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCC
Q 001646 313 ADTNMDLY-N---------------DTVRVKMGF--KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (1038)
Q Consensus 313 f~~~~~~~-k---------------~~lReklgi--~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~ 374 (1038)
|.++.... + ...++.+|+ .+++++|+++| |+.+. ||++.||+|+..+.+..++
T Consensus 534 F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VG-RL~~~---KGid~LIeA~a~l~~l~~~----- 604 (815)
T PLN00142 534 YFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMA-RLDRV---KNLTGLVEWYGKNKRLREL----- 604 (815)
T ss_pred cCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEe-cCccc---CCHHHHHHHHHHHHHhCCC-----
Confidence 65554321 1 112345665 45677999999 88888 9999999999988765555
Q ss_pred CCEEEEEEeCC-CC--C------chHHHHHHHHHHcCCCCceEEEccCh------hhHHHHHH-hcCEEEEcccCCcCCc
Q 001646 375 SPIKVMILSGD-ST--S------NYSVVIEAIAHNLHYPLGVVKHMAAE------GDVDSVLN-TADVVIYGSFLEEQTF 438 (1038)
Q Consensus 375 ~~vkLVIVGG~-~~--e------~Y~~~LeeLa~qLgL~d~~V~flG~~------edV~~lLa-aADIfVlPS~~EeqGF 438 (1038)
++|+|+||. .. . .....+.++++++++.+ +|.|+|.. .++..+++ ++|+||+||.+| ||
T Consensus 605 --~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~-~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~E--gF 679 (815)
T PLN00142 605 --VNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKG-QFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYE--AF 679 (815)
T ss_pred --cEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCC-cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCccc--CC
Confidence 899999943 21 1 11245778899999998 99999853 34556666 479999999999 79
Q ss_pred CHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHHHHH-HhhC
Q 001646 439 PEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI----TNGKISPFARNIASIGRRSV-KNLM 513 (1038)
Q Consensus 439 PlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LL----sDg~l~elr~~mg~~are~a-k~Fs 513 (1038)
|++++||||||+|||+|+.||++|+|.+|++|+++++.|+++++++|..++ .| ++.+++|+++|++.+ ++|+
T Consensus 680 GLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~D---p~lr~~mg~~Ar~rv~e~FS 756 (815)
T PLN00142 680 GLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKED---PSYWNKISDAGLQRIYECYT 756 (815)
T ss_pred CHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999987654 68 899999999999999 7799
Q ss_pred HHHHHHHHHHHH
Q 001646 514 ALETIEGYAMLL 525 (1038)
Q Consensus 514 ~e~ia~~Y~~Ly 525 (1038)
|+.+++++.++.
T Consensus 757 We~~A~rll~L~ 768 (815)
T PLN00142 757 WKIYAERLLTLG 768 (815)
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 39
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=5.2e-29 Score=282.97 Aligned_cols=335 Identities=14% Similarity=0.117 Sum_probs=233.4
Q ss_pred ceEEEEcCCC-CCChHHHHHHHHHHHHHHc--CCeEEEEEcCCCcchhhhhhcCc-------eEEEc---ccchhHHHHh
Q 001646 145 PQLALVFPDL-LIDPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRNIGV-------PVAIL---QTGREKASFV 211 (1038)
Q Consensus 145 prIaiV~~~L-~iGGae~~v~~LAkaL~k~--G~eV~V~t~~~g~~~~~~e~~gI-------~v~~l---~~~rkl~~lI 211 (1038)
.||+++.+.+ ..||+|.++..+++.|.+. |++|.+++.............+. .+..+ .....+.+.+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWL 80 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHH
Confidence 4788888876 4699999999999999999 89999888765432222222221 11111 1123355667
Q ss_pred hhcCCcEEEEcCCchhHHHHHHHhCCCCC--CCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc--
Q 001646 212 NWLNYDGILVNSLEAKVVISNIMQEPFKS--LPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-- 287 (1038)
Q Consensus 212 ~~~kpDIVhvhs~~~~~~la~La~~~~~g--IPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~-- 287 (1038)
+..+||+||+|+... ..++.++.. ..+ .+++.+.|......... .. ..+..++.+++.+..
T Consensus 81 ~~~~~Dii~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~------------~~-~~~~~~d~~i~~S~~~~ 145 (359)
T PRK09922 81 KETQPDIVICIDVIS-CLYANKARK-KSGKQFKIFSWPHFSLDHKKHA------------EC-KKITCADYHLAISSGIK 145 (359)
T ss_pred HhcCCCEEEEcCHHH-HHHHHHHHH-HhCCCCeEEEEecCcccccchh------------hh-hhhhcCCEEEEcCHHHH
Confidence 778999999998655 244443322 223 35566667421110000 00 012345555554443
Q ss_pred cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 001646 288 LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (1038)
Q Consensus 288 l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~ 367 (1038)
..+...+++.+++.+|++ |+|...+.. +. ....++++++++| ++.. ++.||++.+++|+..+..
T Consensus 146 ~~~~~~~~~~~ki~vi~N-~id~~~~~~--~~---------~~~~~~~~i~~~G-rl~~-~~~k~~~~l~~a~~~~~~-- 209 (359)
T PRK09922 146 EQMMARGISAQRISVIYN-PVEIKTIII--PP---------PERDKPAVFLYVG-RLKF-EGQKNVKELFDGLSQTTG-- 209 (359)
T ss_pred HHHHHcCCCHHHEEEEcC-CCCHHHccC--CC---------cccCCCcEEEEEE-EEec-ccCcCHHHHHHHHHhhCC--
Confidence 122233455678889985 777522211 10 0123467899999 6543 235899999999988743
Q ss_pred ccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh----hhHHHHHHhcCEEEEcccCCcCCcCHHH
Q 001646 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE----GDVDSVLNTADVVIYGSFLEEQTFPEIL 442 (1038)
Q Consensus 368 p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~----edV~~lLaaADIfVlPS~~EeqGFPlvL 442 (1038)
+ ++|+|+| |+.. +.++++++++++++ +|.|+|++ +++.++|+.+|++|+||.+| |||+++
T Consensus 210 -~-------~~l~ivG~g~~~----~~l~~~~~~~~l~~-~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~E--gf~~~~ 274 (359)
T PRK09922 210 -E-------WQLHIIGDGSDF----EKCKAYSRELGIEQ-RIIWHGWQSQPWEVVQQKIKNVSALLLTSKFE--GFPMTL 274 (359)
T ss_pred -C-------eEEEEEeCCccH----HHHHHHHHHcCCCC-eEEEecccCCcHHHHHHHHhcCcEEEECCccc--CcChHH
Confidence 3 8999999 8765 78899999999998 89999976 35677888999999999998 799999
Q ss_pred HHHHHcCCCEEEcC-CcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHH
Q 001646 443 VKALCFRKPIIAPD-LSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGY 521 (1038)
Q Consensus 443 LEAMA~GkPVIaTd-vgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y 521 (1038)
+||||||+|||+|+ .+|..|+|.++.+|++++++|+++++++|.+++++ ++.+ ...+..+.+++|+.+...+++
T Consensus 275 lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~ 349 (359)
T PRK09922 275 LEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISG---EVKY--QHDAIPNSIERFYEVLYFKNL 349 (359)
T ss_pred HHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhC---cccC--CHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999999 7643 122233345677788888888
Q ss_pred HHHHHHhhc
Q 001646 522 AMLLENVLK 530 (1038)
Q Consensus 522 ~~Lye~vLk 530 (1038)
..+|+++.+
T Consensus 350 ~~~~~~~~~ 358 (359)
T PRK09922 350 NNALFSKLQ 358 (359)
T ss_pred HHHHHHHhc
Confidence 888887653
No 40
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=2.3e-29 Score=297.36 Aligned_cols=284 Identities=16% Similarity=0.190 Sum_probs=222.9
Q ss_pred cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHH---------HhhhhchhHH-HHHHHHHHHhcceEec
Q 001646 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRAR---------NYASSGQLEL-LNDWKKVFNRATVVVF 283 (1038)
Q Consensus 214 ~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~le---------k~~~~~~d~l-Is~~~~~~~~a~~vvf 283 (1038)
.++|+||+|+....++++.++. +..++|+|+|.|+.....+.. .........+ ....+..+..++.++.
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~-~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii~ 250 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAK-ARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRITT 250 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHH-HHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEEe
Confidence 4899999998755345555543 366899999999832211100 0011111111 1123346678887776
Q ss_pred cCCcc--ccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHH
Q 001646 284 PDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALL 361 (1038)
Q Consensus 284 ps~~l--~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~ 361 (1038)
.+... .....+.+.+++.+||+ |+|...+...... ...++.++|+++| ++.+. ||++.+++|++
T Consensus 251 ~s~~~~~~~~~~g~~~~ki~vIpN-gid~~~f~~~~~~---------~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~ 316 (475)
T cd03813 251 LYEGNRERQIEDGADPEKIRVIPN-GIDPERFAPARRA---------RPEKEPPVVGLIG-RVVPI---KDIKTFIRAAA 316 (475)
T ss_pred cCHHHHHHHHHcCCCHHHeEEeCC-CcCHHHcCCcccc---------ccCCCCcEEEEEe-ccccc---cCHHHHHHHHH
Confidence 65542 22334566788999995 8887544332110 2345678999999 77776 89999999999
Q ss_pred HchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCH
Q 001646 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPE 440 (1038)
Q Consensus 362 ~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPl 440 (1038)
.+.++.|+ ++|+|+| |+....|.+.++++++++++.+ +|.|+| .+++.++|+.+|++|+||..| |||+
T Consensus 317 ~l~~~~p~-------~~l~IvG~g~~~~~~~~e~~~li~~l~l~~-~V~f~G-~~~v~~~l~~aDv~vlpS~~E--g~p~ 385 (475)
T cd03813 317 IVRKKIPD-------AEGWVIGPTDEDPEYAEECRELVESLGLED-NVKFTG-FQNVKEYLPKLDVLVLTSISE--GQPL 385 (475)
T ss_pred HHHHhCCC-------eEEEEECCCCcChHHHHHHHHHHHHhCCCC-eEEEcC-CccHHHHHHhCCEEEeCchhh--cCCh
Confidence 99988888 9999999 6666678899999999999998 999999 779999999999999999988 7999
Q ss_pred HHHHHHHcCCCEEEcCCccccccccc------CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-hhC
Q 001646 441 ILVKALCFRKPIIAPDLSNIRKYVDD------RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK-NLM 513 (1038)
Q Consensus 441 vLLEAMA~GkPVIaTdvgGi~EiV~d------G~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak-~Fs 513 (1038)
+++||||||+|||+|+.|+++|++.+ |.+|+++++.|+++++++|.++++| ++.+++|+++|++.++ .|+
T Consensus 386 ~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~---~~~~~~~~~~a~~~v~~~~s 462 (475)
T cd03813 386 VILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD---PELRRAMGEAGRKRVERYYT 462 (475)
T ss_pred HHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999988 6799999999999999999999999 9999999999999995 589
Q ss_pred HHHHHHHHHHHHH
Q 001646 514 ALETIEGYAMLLE 526 (1038)
Q Consensus 514 ~e~ia~~Y~~Lye 526 (1038)
++.++++|.++|+
T Consensus 463 ~~~~~~~y~~lY~ 475 (475)
T cd03813 463 LERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999984
No 41
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=2.3e-28 Score=272.82 Aligned_cols=341 Identities=13% Similarity=0.138 Sum_probs=231.3
Q ss_pred eEEEEcCC---CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccch---------hHHHHhhh
Q 001646 146 QLALVFPD---LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR---------EKASFVNW 213 (1038)
Q Consensus 146 rIaiV~~~---L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~r---------kl~~lI~~ 213 (1038)
||++|... -..||++.++.++++.|.++||+|+|++.............++++..++... .+..+...
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIPAPEIGGLGTIIYDILAILHA 80 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccccCCceEEEcCCCCccchhhhHHHHHHHHHH
Confidence 46777453 2569999999999999999999999999876443322333455655544321 01111111
Q ss_pred --cCCcEEEEcCCchh-HHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHH-HHHHHHhcceEeccCCccc
Q 001646 214 --LNYDGILVNSLEAK-VVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLND-WKKVFNRATVVVFPDYVLP 289 (1038)
Q Consensus 214 --~kpDIVhvhs~~~~-~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~-~~~~~~~a~~vvfps~~l~ 289 (1038)
.++|++|+|..... .....++ . ..++|+++++|+...... .. ......+... ....+..++.+++.+....
T Consensus 81 ~~~~~~~~~i~~~~~~~~~~~~~~-~-~~~~~~v~~~h~~~~~~~--~~-~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 155 (363)
T cd04955 81 LFVKRDIDHVHALGPAIAPFLPLL-R-LKGKKVVVNMDGLEWKRA--KW-GRPAKRYLKFGEKLAVKFADRLIADSPGIK 155 (363)
T ss_pred HhccCCeEEEEecCccHHHHHHHH-H-hcCCCEEEEccCcceeec--cc-ccchhHHHHHHHHHHHhhccEEEeCCHHHH
Confidence 24555555543331 1222233 2 347899999997322110 00 0001111111 1224556676666655522
Q ss_pred -cccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcc
Q 001646 290 -MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (1038)
Q Consensus 290 -viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p 368 (1038)
.+...+.... .+||+ |+|...+.. ....+..++..++. .++++| ++.+. ||++.+++|++.+..
T Consensus 156 ~~~~~~~~~~~-~~i~n-gv~~~~~~~-----~~~~~~~~~~~~~~-~i~~~G-~~~~~---Kg~~~li~a~~~l~~--- 220 (363)
T cd04955 156 EYLKEKYGRDS-TYIPY-GADHVVSSE-----EDEILKKYGLEPGR-YYLLVG-RIVPE---NNIDDLIEAFSKSNS--- 220 (363)
T ss_pred HHHHHhcCCCC-eeeCC-CcChhhcch-----hhhhHHhcCCCCCc-EEEEEe-ccccc---CCHHHHHHHHHhhcc---
Confidence 2212222223 77774 777633221 12234455665554 678999 77777 899999999998864
Q ss_pred cCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccC-CcCCcCHHHHH
Q 001646 369 VENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL-EEQTFPEILVK 444 (1038)
Q Consensus 369 ~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~-EeqGFPlvLLE 444 (1038)
+ ++|+|+| |+....+.+.+ .+.+++.+ +|+++|++ +++..+|.+||++++||.. | |||++++|
T Consensus 221 ~-------~~l~ivG~~~~~~~~~~~~---~~~~~~~~-~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e--~~~~~~~E 287 (363)
T cd04955 221 G-------KKLVIVGNADHNTPYGKLL---KEKAAADP-RIIFVGPIYDQELLELLRYAALFYLHGHSVG--GTNPSLLE 287 (363)
T ss_pred C-------ceEEEEcCCCCcchHHHHH---HHHhCCCC-cEEEccccChHHHHHHHHhCCEEEeCCccCC--CCChHHHH
Confidence 3 8999999 65553333332 22567777 89999977 6788999999999999988 6 89999999
Q ss_pred HHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-hhCHHHHHHHHHH
Q 001646 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK-NLMALETIEGYAM 523 (1038)
Q Consensus 445 AMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak-~Fs~e~ia~~Y~~ 523 (1038)
||+||+|||+|+.|+..|++.+ +|+++++.|+ ++++|.+++++ ++.+.++++++++.++ +|+|+.++++|.+
T Consensus 288 Ama~G~PvI~s~~~~~~e~~~~--~g~~~~~~~~--l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 360 (363)
T cd04955 288 AMAYGCPVLASDNPFNREVLGD--KAIYFKVGDD--LASLLEELEAD---PEEVSAMAKAARERIREKYTWEKIADQYEE 360 (363)
T ss_pred HHHcCCCEEEecCCccceeecC--CeeEecCchH--HHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999977 7899987765 99999999999 9999999999999984 5999999999999
Q ss_pred HHH
Q 001646 524 LLE 526 (1038)
Q Consensus 524 Lye 526 (1038)
+|+
T Consensus 361 ~y~ 363 (363)
T cd04955 361 LYK 363 (363)
T ss_pred HhC
Confidence 874
No 42
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.2e-28 Score=274.14 Aligned_cols=337 Identities=16% Similarity=0.136 Sum_probs=238.6
Q ss_pred eEEEEcCCCC--CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEccc---------chhHHHH--hh
Q 001646 146 QLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT---------GREKASF--VN 212 (1038)
Q Consensus 146 rIaiV~~~L~--iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~---------~rkl~~l--I~ 212 (1038)
||++|.+... .||.+.++..+++.|.++||+|+|++.............+.++..++. ....... +.
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKL 80 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHHHhc
Confidence 4667766544 699999999999999999999999998764433222222222222211 1111111 34
Q ss_pred hcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcccc-c
Q 001646 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPM-M 291 (1038)
Q Consensus 213 ~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~v-i 291 (1038)
..++|+||+|.+........+.. ..++|+++++|+...... .... .........+..++.+++.+..... .
T Consensus 81 ~~~~Dii~~~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~---~~~~---~~~~~~~~~~~~~d~vi~~s~~~~~~~ 152 (357)
T cd03795 81 AKKADVIHLHFPNPLADLALLLL--PRKKPVVVHWHSDIVKQK---LLLK---LYRPLQRRFLRRADAIVATSPNYAETS 152 (357)
T ss_pred CCCCCEEEEecCcchHHHHHHHh--ccCceEEEEEcChhhccc---hhhh---hhhHHHHHHHHhcCEEEeCcHHHHHHH
Confidence 57899999998776433333332 256899999997432211 0000 0011122355667776665544221 1
Q ss_pred cc-cCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccC
Q 001646 292 YS-AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVE 370 (1038)
Q Consensus 292 yn-~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~ 370 (1038)
.. .....++.++|+ |+|...+...... + ........+.++++++| ++.+. ||++.+++|+.++. +
T Consensus 153 ~~~~~~~~~~~~i~~-gi~~~~~~~~~~~-~---~~~~~~~~~~~~i~~~G-~~~~~---K~~~~li~a~~~l~----~- 218 (357)
T cd03795 153 PVLRRFRDKVRVIPL-GLDPARYPRPDAL-E---EAIWRRAAGRPFFLFVG-RLVYY---KGLDVLLEAAAALP----D- 218 (357)
T ss_pred HHhcCCccceEEecC-CCChhhcCCcchh-h---hHhhcCCCCCcEEEEec-ccccc---cCHHHHHHHHHhcc----C-
Confidence 11 111257788884 7776433221110 0 02234456778999999 67776 89999999999987 4
Q ss_pred CCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHH
Q 001646 371 NESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (1038)
Q Consensus 371 ~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA 447 (1038)
++|+|+| |+.. ..++++++++++.+ +|.|+|++ +++.++|+.||++++||....+|||++++|||+
T Consensus 219 ------~~l~i~G~g~~~----~~~~~~~~~~~~~~-~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~ 287 (357)
T cd03795 219 ------APLVIVGEGPLE----AELEALAAALGLLD-RVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMA 287 (357)
T ss_pred ------cEEEEEeCChhH----HHHHHHHHhcCCcc-eEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHH
Confidence 8999999 7654 77888888889888 89999987 568999999999999996422289999999999
Q ss_pred cCCCEEEcCCccccccccc-CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHH
Q 001646 448 FRKPIIAPDLSNIRKYVDD-RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETI 518 (1038)
Q Consensus 448 ~GkPVIaTdvgGi~EiV~d-G~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia 518 (1038)
||+|||+++.++..+.+.+ +.+|++++++|+++++++|..++++ ++.+++|+.+|++.+ ++|++++++
T Consensus 288 ~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 288 FGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLED---PELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred cCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHhcchHhhC
Confidence 9999999999999999886 8999999999999999999999999 999999999999999 669998764
No 43
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=1e-28 Score=268.37 Aligned_cols=332 Identities=20% Similarity=0.260 Sum_probs=241.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcC-----ce------EEEcccchhHHHHhhhc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIG-----VP------VAILQTGREKASFVNWL 214 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~g-----I~------v~~l~~~rkl~~lI~~~ 214 (1038)
||+++++....||.+..+..++++|.+.||+|.+++.............. .. .........+...++..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 58899999989999999999999999999999999986643221111110 00 11111223456667778
Q ss_pred CCcEEEEcCC-chhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc-cccc
Q 001646 215 NYDGILVNSL-EAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-PMMY 292 (1038)
Q Consensus 215 kpDIVhvhs~-~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l-~viy 292 (1038)
+||+||++.. .. ..+..+... . ++|+++++|+............ .......+..++.+++.+... ....
T Consensus 81 ~~dii~~~~~~~~-~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~ii~~s~~~~~~~~ 151 (353)
T cd03811 81 KPDVVISHLTTTP-NVLALLAAR-L-GTKLIVWEHNSLSLELKRKLRL------LLLIRKLYRRADKIVAVSEGVKEDLL 151 (353)
T ss_pred CCCEEEEcCccch-hHHHHHHhh-c-CCceEEEEcCcchhhhccchhH------HHHHHhhccccceEEEeccchhhhHH
Confidence 9999999998 33 233343332 3 7899999997433211100000 012333556667666665552 2222
Q ss_pred ccCC--CCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccC
Q 001646 293 SAFD--AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVE 370 (1038)
Q Consensus 293 n~vd--~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~ 370 (1038)
.... ..++.++|+ |++...+...... .. ..+...+.++++++| ++.+. ||++.+++|+..+.+++++
T Consensus 152 ~~~~~~~~~~~vi~~-~~~~~~~~~~~~~---~~--~~~~~~~~~~i~~~g-~~~~~---k~~~~~i~~~~~l~~~~~~- 220 (353)
T cd03811 152 KLLGIPPDKIEVIYN-PIDIEEIRALAEE---PL--ELGIPPDGPVILAVG-RLSPQ---KGFDTLIRAFALLRKEGPD- 220 (353)
T ss_pred HhhcCCccccEEecC-CcChhhcCcccch---hh--hcCCCCCceEEEEEe-cchhh---cChHHHHHHHHHhhhcCCC-
Confidence 2222 577888884 6776333222111 10 345567788999999 66676 8999999999999887666
Q ss_pred CCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcC
Q 001646 371 NESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFR 449 (1038)
Q Consensus 371 ~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~G 449 (1038)
++|+|+| |+.. +.++++++++++.+ +|.++|+.+++.++|+.||++|+||..| |+|++++|||++|
T Consensus 221 ------~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~d~~i~ps~~e--~~~~~~~Ea~~~G 287 (353)
T cd03811 221 ------ARLVILGDGPLR----EELEALAKELGLAD-RVHFLGFQSNPYPYLKAADLFVLSSRYE--GFPNVLLEAMALG 287 (353)
T ss_pred ------ceEEEEcCCccH----HHHHHHHHhcCCCc-cEEEecccCCHHHHHHhCCEEEeCcccC--CCCcHHHHHHHhC
Confidence 9999999 6665 67778899999988 8999999999999999999999999998 7999999999999
Q ss_pred CCEEEcCCcccccccccCccEEEEcCCCHHHH---HHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhC
Q 001646 450 KPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL---THIILQVITNGKISPFARNIASIGRRSV-KNLM 513 (1038)
Q Consensus 450 kPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaL---AeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs 513 (1038)
+|||+++.||..|++.++.+|+++++++++++ +++|..+.++ ++.+.+++.++++.+ ++|+
T Consensus 288 ~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 288 TPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLD---PELRERLAAAARERVAREYS 352 (353)
T ss_pred CCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC---hHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 6777777778 888888998777766 5454
No 44
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.97 E-value=4.1e-29 Score=289.80 Aligned_cols=337 Identities=15% Similarity=0.157 Sum_probs=221.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh--hhhcC--------------ce------EEEcc
Q 001646 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV--WRNIG--------------VP------VAILQ 202 (1038)
Q Consensus 145 prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~--~e~~g--------------I~------v~~l~ 202 (1038)
+||++|...+..||+++++..|++.|.+.||+|.++.......... .+... +. ...+.
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 4789999999999999999999999999999999998764221110 00000 00 00111
Q ss_pred cchhHHHHh-hhcCCcEEEEcCCchhH--H--HHHH---HhCCCCCCCEEEEEeCchhH-----------HhHHH-----
Q 001646 203 TGREKASFV-NWLNYDGILVNSLEAKV--V--ISNI---MQEPFKSLPLVWTIHEGTLA-----------TRARN----- 258 (1038)
Q Consensus 203 ~~rkl~~lI-~~~kpDIVhvhs~~~~~--~--la~L---a~~~~~gIPvI~tiHg~~L~-----------~~lek----- 258 (1038)
......++| +..+|||||+|...+.. + +..+ +.....++|+|||.|+.-.. .|...
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 122334445 56799999999877521 1 1111 11235678999999982111 11000
Q ss_pred ----hhh---hchhHHHHHHHHHH----HhcceEeccCCccc-cccccCCCCCEEEcCCCCCCccccccccchhhHHHHH
Q 001646 259 ----YAS---SGQLELLNDWKKVF----NRATVVVFPDYVLP-MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRV 326 (1038)
Q Consensus 259 ----~~~---~~~d~lIs~~~~~~----~~a~~vvfps~~l~-viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lRe 326 (1038)
+.. ..+..+....+..+ +.+..++.++..+. .+...+...++.+||+ |+|...+.+.... .
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~N-Gid~~~~~~~~~~--~---- 233 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINN-GIDMATEAILAEL--P---- 233 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCC-CcCcccccccccc--c----
Confidence 100 01112222222222 23345666665522 2222334578999995 8886322222111 0
Q ss_pred hhCCCCCCEEEEEEecccc-cccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCC
Q 001646 327 KMGFKPDDLVIAIVGTQFM-YRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYP 404 (1038)
Q Consensus 327 klgi~~d~~vIL~VGsrl~-~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~ 404 (1038)
....++++++|+++|+.+. ++ ||++.+++|+..+. ++ ++|+|+| |+.. . .
T Consensus 234 ~~~~~~~~~~il~v~~~~~~~~---Kg~~~li~A~~~l~---~~-------~~L~ivG~g~~~----~-----------~ 285 (405)
T PRK10125 234 PVRETQGKPKIAVVAHDLRYDG---KTDQQLVREMMALG---DK-------IELHTFGKFSPF----T-----------A 285 (405)
T ss_pred ccccCCCCCEEEEEEeccccCC---ccHHHHHHHHHhCC---CC-------eEEEEEcCCCcc----c-----------c
Confidence 0112346678999994342 44 88999999999874 23 8999999 5432 0 1
Q ss_pred CceEEEccCh---hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHH
Q 001646 405 LGVVKHMAAE---GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL 481 (1038)
Q Consensus 405 d~~V~flG~~---edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaL 481 (1038)
. .|.++|.. .++.++|++||+||+||.+| |||++++||||||+|||+|++||++|+|.++ +|++++++|+++|
T Consensus 286 ~-~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~E--gfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~L 361 (405)
T PRK10125 286 G-NVVNHGFETDKRKLMSALNQMDALVFSSRVD--NYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQL 361 (405)
T ss_pred c-ceEEecCcCCHHHHHHHHHhCCEEEECCccc--cCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHH
Confidence 2 47788854 67899999999999999988 7999999999999999999999999999875 8999999999999
Q ss_pred HHHHHHHHHcCCCcHHHHH----HHHHHHHHH-HhhCHHHHHHHHHHHHHHh
Q 001646 482 THIILQVITNGKISPFARN----IASIGRRSV-KNLMALETIEGYAMLLENV 528 (1038)
Q Consensus 482 AeAI~~LLsDg~l~elr~~----mg~~are~a-k~Fs~e~ia~~Y~~Lye~v 528 (1038)
|+++. +....+ +..++++.+ ++|+++.++++|.++|+++
T Consensus 362 a~~~~--------~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 362 AQLSK--------PEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred HhccC--------HHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 98643 233332 235577777 6699999999999999863
No 45
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=1e-28 Score=274.38 Aligned_cols=331 Identities=19% Similarity=0.226 Sum_probs=245.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh---hhcCceEEEc-------ccchhHHHHhhhcC
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW---RNIGVPVAIL-------QTGREKASFVNWLN 215 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~---e~~gI~v~~l-------~~~rkl~~lI~~~k 215 (1038)
||++|++.+..+ .+..+.++++.|.++||+|.|++.......... ......+..+ .....+...++..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 588888887555 888999999999999999999998654322110 0111111110 11112233345579
Q ss_pred CcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccc-cccc-
Q 001646 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP-MMYS- 293 (1038)
Q Consensus 216 pDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~-viyn- 293 (1038)
+|+||+|.......+..+.. +..++|++++.|+........ .......+..++.+++.+.... .+..
T Consensus 80 ~Dii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~vi~~s~~~~~~l~~~ 148 (355)
T cd03799 80 IDHIHAHFGTTPATVAMLAS-RLGGIPYSFTAHGKDIFRSPD----------AIDLDEKLARADFVVAISEYNRQQLIRL 148 (355)
T ss_pred CCEEEECCCCchHHHHHHHH-HhcCCCEEEEEecccccccCc----------hHHHHHHHhhCCEEEECCHHHHHHHHHh
Confidence 99999998765334444443 344789999999633221100 0122334556666666655522 2222
Q ss_pred -cCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCC
Q 001646 294 -AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (1038)
Q Consensus 294 -~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~ 372 (1038)
+....++.++|+ ++|...+.... .....+++.|+++| ++.+. ||++.+++|+..+.++.++
T Consensus 149 ~~~~~~~~~vi~~-~~d~~~~~~~~----------~~~~~~~~~i~~~g-~~~~~---k~~~~l~~~~~~l~~~~~~--- 210 (355)
T cd03799 149 LGCDPDKIHVVHC-GVDLERFPPRP----------PPPPGEPLRILSVG-RLVEK---KGLDYLLEALALLKDRGID--- 210 (355)
T ss_pred cCCCcccEEEEeC-CcCHHHcCCcc----------ccccCCCeEEEEEe-eeccc---cCHHHHHHHHHHHhhcCCC---
Confidence 355678889985 77763332211 12334567899999 67776 8999999999999877666
Q ss_pred CCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccC------CcCCcCHHHH
Q 001646 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL------EEQTFPEILV 443 (1038)
Q Consensus 373 ~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~------EeqGFPlvLL 443 (1038)
++|+|+| |+.. +.+++.++++++.+ +|.++|+. +++.++|+.||++|+||.. | |||++++
T Consensus 211 ----~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e--~~~~~~~ 279 (355)
T cd03799 211 ----FRLDIVGDGPLR----DELEALIAELGLED-RVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDRE--GLPVVLM 279 (355)
T ss_pred ----eEEEEEECCccH----HHHHHHHHHcCCCC-eEEECCcCChHHHHHHHHhCCEEEecceecCCCCcc--CccHHHH
Confidence 9999999 7665 77888899889888 89999987 7899999999999999988 7 7999999
Q ss_pred HHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHH
Q 001646 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (1038)
Q Consensus 444 EAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~ 520 (1038)
|||++|+|||+++.++.++++.++.+|++++++|+++++++|..++++ ++.+.+|+++|++.+ ++|+|+.++++
T Consensus 280 Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 280 EAMAMGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDD---PELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred HHHHcCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999999999999999999999999899999999999999999999999 999999999999999 66999998865
No 46
>PRK14098 glycogen synthase; Provisional
Probab=99.97 E-value=2.3e-28 Score=289.78 Aligned_cols=360 Identities=14% Similarity=0.123 Sum_probs=253.4
Q ss_pred CceEEEEcCCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh---h------hh-----------------
Q 001646 144 KPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV---W------RN----------------- 193 (1038)
Q Consensus 144 ~prIaiV~~~L----~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~---~------e~----------------- 193 (1038)
..+|++|...+ ..||..-++-.|.++|+++||+|.|+.+..+..... . ..
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 38899998876 479999999999999999999999998854222110 0 00
Q ss_pred ----cCceEEEccc---------c----------hh----------HHHHhhh--cCCcEEEEcCCchhHHHHHHHhCC-
Q 001646 194 ----IGVPVAILQT---------G----------RE----------KASFVNW--LNYDGILVNSLEAKVVISNIMQEP- 237 (1038)
Q Consensus 194 ----~gI~v~~l~~---------~----------rk----------l~~lI~~--~kpDIVhvhs~~~~~~la~La~~~- 237 (1038)
.+++++.+.. + .. ....+.. .+|||||+|.+.. +++..++...
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t-~l~~~~l~~~~ 163 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYA-GLVPLLLKTVY 163 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHH-HHHHHHHHHHh
Confidence 0122222210 0 00 1111222 4799999999887 3555544321
Q ss_pred -----CCCCCEEEEEeCchhH-----HhHHHhhh-h------chhHHHHHHHHHHHhcceEeccCCc--ccccc-----c
Q 001646 238 -----FKSLPLVWTIHEGTLA-----TRARNYAS-S------GQLELLNDWKKVFNRATVVVFPDYV--LPMMY-----S 293 (1038)
Q Consensus 238 -----~~gIPvI~tiHg~~L~-----~~lek~~~-~------~~d~lIs~~~~~~~~a~~vvfps~~--l~viy-----n 293 (1038)
+.++|+|+|+|+.... ........ . .....+...+..+..++.++..+.. ..+.. .
T Consensus 164 ~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~ 243 (489)
T PRK14098 164 ADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAF 243 (489)
T ss_pred hhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCc
Confidence 3479999999982211 00111000 0 0001133344466777776665544 11111 1
Q ss_pred cCC------CCCEEEcCCCCCCccccccccch----------------hhHHHHHhhCCCC--CCEEEEEEecccccccc
Q 001646 294 AFD------AGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFKP--DDLVIAIVGTQFMYRGL 349 (1038)
Q Consensus 294 ~vd------~~ki~VIPgsgVD~~~f~~~~~~----------------~k~~lReklgi~~--d~~vIL~VGsrl~~~KG 349 (1038)
+++ ..++.+|+| |+|...+.+.... .+..+++.+|++. +.++|+++| |+.++
T Consensus 244 gl~~~l~~~~~kl~~I~N-GID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vg-Rl~~~-- 319 (489)
T PRK14098 244 GLDKVLEERKMRLHGILN-GIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVII-NFDDF-- 319 (489)
T ss_pred ChHHHHHhcCCCeeEEeC-CccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEec-ccccc--
Confidence 222 568899995 8888655443221 1456777888863 568999999 88887
Q ss_pred cccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCE
Q 001646 350 WLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADV 426 (1038)
Q Consensus 350 iKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADI 426 (1038)
||++++++|+..+.+. + ++|+|+| |+. .+.+.++++++++ ++ +|.|+|.. +++..+|++||+
T Consensus 320 -KG~d~li~a~~~l~~~--~-------~~lvivG~G~~--~~~~~l~~l~~~~--~~-~V~~~g~~~~~~~~~~~a~aDi 384 (489)
T PRK14098 320 -QGAELLAESLEKLVEL--D-------IQLVICGSGDK--EYEKRFQDFAEEH--PE-QVSVQTEFTDAFFHLAIAGLDM 384 (489)
T ss_pred -CcHHHHHHHHHHHHhc--C-------cEEEEEeCCCH--HHHHHHHHHHHHC--CC-CEEEEEecCHHHHHHHHHhCCE
Confidence 9999999999998753 4 8999999 653 3568899999876 45 79999965 457899999999
Q ss_pred EEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccccc----CccEEEEcCCCHHHHHHHHHHHH---HcCCCcHHHH
Q 001646 427 VIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD----RVNGYLFPKENIKALTHIILQVI---TNGKISPFAR 499 (1038)
Q Consensus 427 fVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~d----G~nGlLv~~~D~eaLAeAI~~LL---sDg~l~elr~ 499 (1038)
+|+||.+| +||++.+|||+||+|+|++++||+.|+|.+ +.+|+++++.|+++|+++|.+++ ++ ++.+.
T Consensus 385 ~l~PS~~E--~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~---~~~~~ 459 (489)
T PRK14098 385 LLMPGKIE--SCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHD---EERWE 459 (489)
T ss_pred EEeCCCCC--CchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcC---HHHHH
Confidence 99999998 799999999999999999999999998864 67999999999999999999865 56 77777
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 001646 500 NIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 500 ~mg~~are~ak~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
+++.++. .++|+|+.++++|.++|+++++
T Consensus 460 ~~~~~~~--~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 460 ELVLEAM--ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHHHh--cCCCChHHHHHHHHHHHHHHhc
Confidence 7776553 3679999999999999998864
No 47
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.97 E-value=2.2e-28 Score=270.38 Aligned_cols=314 Identities=13% Similarity=0.111 Sum_probs=219.6
Q ss_pred ceEEEEcCCC------CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceE----------EEcccchhHH
Q 001646 145 PQLALVFPDL------LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPV----------AILQTGREKA 208 (1038)
Q Consensus 145 prIaiV~~~L------~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v----------~~l~~~rkl~ 208 (1038)
+||++|.+.. ..||+++++..+++.|.+.||+|++++................. ........+.
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 3788888876 78999999999999999999999999987643221111111000 0011112344
Q ss_pred HHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc
Q 001646 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL 288 (1038)
Q Consensus 209 ~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l 288 (1038)
..++..+||+||+|+.... .+ + .+..++|+|++.|+........ ........+.++..+...
T Consensus 81 ~~~~~~~~Divh~~~~~~~-~~--~--~~~~~~~~v~~~h~~~~~~~~~-------------~~~~~~~~~~~~~~s~~~ 142 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLP-LP--F--ARPLPVPVVTTLHGPPDPELLK-------------LYYAARPDVPFVSISDAQ 142 (335)
T ss_pred HHHhcCCCCEEEecCcccc-hh--h--hcccCCCEEEEecCCCCcccch-------------HHHhhCcCCeEEEecHHH
Confidence 5567789999999998773 32 2 2456789999999743221100 001112222233332221
Q ss_pred ccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcc
Q 001646 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (1038)
Q Consensus 289 ~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p 368 (1038)
....... .++.+||+ |+|...+.. .+.++..++++| ++.+. ||++.+++|++..
T Consensus 143 ~~~~~~~--~~~~vi~n-gvd~~~~~~--------------~~~~~~~i~~~G-r~~~~---Kg~~~li~~~~~~----- 196 (335)
T cd03802 143 RRPWPPL--PWVATVHN-GIDLDDYPF--------------RGPKGDYLLFLG-RISPE---KGPHLAIRAARRA----- 196 (335)
T ss_pred Hhhcccc--cccEEecC-CcChhhCCC--------------CCCCCCEEEEEE-eeccc---cCHHHHHHHHHhc-----
Confidence 1111111 57888884 788744332 123455899999 77777 8999999997653
Q ss_pred cCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC-CCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHH
Q 001646 369 VENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH-YPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (1038)
Q Consensus 369 ~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLg-L~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLE 444 (1038)
+ ++|+|+| |+.. ..+...+.+.. +.+ +|.|+|++ +++..+|+.+|++|+||...+ |||++++|
T Consensus 197 ~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~~-~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E-~~~~~~lE 263 (335)
T cd03802 197 G-------IPLKLAGPVSDP----DYFYREIAPELLDGP-DIEYLGEVGGAEKAELLGNARALLFPILWEE-PFGLVMIE 263 (335)
T ss_pred C-------CeEEEEeCCCCH----HHHHHHHHHhcccCC-cEEEeCCCCHHHHHHHHHhCcEEEeCCcccC-CcchHHHH
Confidence 3 7999999 6654 34444444433 455 89999987 567899999999999998633 89999999
Q ss_pred HHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHH
Q 001646 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAM 523 (1038)
Q Consensus 445 AMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~ 523 (1038)
|||||+|||+++.||.+|++.++.+|+++++ +++++++|..+.+. + .+++++.+ ++|+++.++++|.+
T Consensus 264 Ama~G~PvI~~~~~~~~e~i~~~~~g~l~~~--~~~l~~~l~~l~~~---~------~~~~~~~~~~~~s~~~~~~~~~~ 332 (335)
T cd03802 264 AMACGTPVIAFRRGAVPEVVEDGVTGFLVDS--VEELAAAVARADRL---D------RAACRRRAERRFSAARMVDDYLA 332 (335)
T ss_pred HHhcCCCEEEeCCCCchhheeCCCcEEEeCC--HHHHHHHHHHHhcc---H------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999985 99999999998765 3 23556666 77999999999999
Q ss_pred HHH
Q 001646 524 LLE 526 (1038)
Q Consensus 524 Lye 526 (1038)
+|+
T Consensus 333 ~y~ 335 (335)
T cd03802 333 LYR 335 (335)
T ss_pred HhC
Confidence 884
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=4e-28 Score=267.80 Aligned_cols=351 Identities=16% Similarity=0.123 Sum_probs=246.9
Q ss_pred eEEEEcCCCCC--ChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh-------hhcCceEEEcccch-----------
Q 001646 146 QLALVFPDLLI--DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW-------RNIGVPVAILQTGR----------- 205 (1038)
Q Consensus 146 rIaiV~~~L~i--GGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~-------e~~gI~v~~l~~~r----------- 205 (1038)
||++|.+.... ||.+..+..++++|.+.||+|.+++.......... ...++++..+....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLL 80 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHH
Confidence 57788887654 89999999999999999999999987653222111 11233333222110
Q ss_pred -------hHHHHh--hhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhh-hh-ch--hHHHHHHH
Q 001646 206 -------EKASFV--NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYA-SS-GQ--LELLNDWK 272 (1038)
Q Consensus 206 -------kl~~lI--~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~-~~-~~--d~lIs~~~ 272 (1038)
.....+ +..+||+||++++.....+......+..++|+++++|+........... .. .. .......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (394)
T cd03794 81 NYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLER 160 (394)
T ss_pred hhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHH
Confidence 011112 2568999999984432233333333455899999999721110000000 00 00 01111223
Q ss_pred HHHHhcceEeccCCccccc--cccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEeccccccccc
Q 001646 273 KVFNRATVVVFPDYVLPMM--YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLW 350 (1038)
Q Consensus 273 ~~~~~a~~vvfps~~l~vi--yn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGi 350 (1038)
..+..++.+++.+...... ...++..++.++|+ +++...+..... ...+.......+.++++++| ++...
T Consensus 161 ~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~G-~~~~~--- 232 (394)
T cd03794 161 LIYRRADAIVVISPGMREYLVRRGVPPEKISVIPN-GVDLELFKPPPA---DESLRKELGLDDKFVVLYAG-NIGRA--- 232 (394)
T ss_pred HHHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCC-CCCHHHcCCccc---hhhhhhccCCCCcEEEEEec-Ccccc---
Confidence 3566777777666552222 24556678889984 666533222211 11134445667788999999 66666
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEE
Q 001646 351 LEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVV 427 (1038)
Q Consensus 351 KgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIf 427 (1038)
||++.+++|+..+.+. ++ ++|+|+| |+.. +.+++++...++++ |.++|+. +++.++|+.||++
T Consensus 233 k~~~~l~~~~~~l~~~-~~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~--v~~~g~~~~~~~~~~~~~~di~ 298 (394)
T cd03794 233 QGLDTLLEAAALLKDR-PD-------IRFLIVGDGPEK----EELKELAKALGLDN--VTFLGRVPKEELPELLAAADVG 298 (394)
T ss_pred cCHHHHHHHHHHHhhc-CC-------eEEEEeCCcccH----HHHHHHHHHcCCCc--EEEeCCCChHHHHHHHHhhCee
Confidence 8999999999999876 56 9999999 7664 66777777677765 9999976 7899999999999
Q ss_pred EEcccCCc---CCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 001646 428 IYGSFLEE---QTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASI 504 (1038)
Q Consensus 428 VlPS~~Ee---qGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~ 504 (1038)
|+||..|+ .++|++++|||++|+|||+++.++..+++.++.+|++++++|+++++++|.++++| ++.+++|+++
T Consensus 299 i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~ 375 (394)
T cd03794 299 LVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDD---PEERAEMGEN 375 (394)
T ss_pred EEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhC---hHHHHHHHHH
Confidence 99998872 24599999999999999999999999999998899999999999999999999999 9999999999
Q ss_pred HHHHHH-hhCHHHHHHHH
Q 001646 505 GRRSVK-NLMALETIEGY 521 (1038)
Q Consensus 505 are~ak-~Fs~e~ia~~Y 521 (1038)
+++.++ +|+++.++++|
T Consensus 376 ~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 376 GRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHhhcHHHHHHhc
Confidence 999995 79999999876
No 49
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=5.5e-28 Score=264.43 Aligned_cols=346 Identities=21% Similarity=0.239 Sum_probs=251.2
Q ss_pred EEEcCCCC---CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhc---------Cce----------EEEcccch
Q 001646 148 ALVFPDLL---IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNI---------GVP----------VAILQTGR 205 (1038)
Q Consensus 148 aiV~~~L~---iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~---------gI~----------v~~l~~~r 205 (1038)
+++.+... .||++..+..+++.|.+.||+|++++............. ... ........
T Consensus 2 Lii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T cd03798 2 LVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAAR 81 (377)
T ss_pred eEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHH
Confidence 45555544 499999999999999999999999998653322111000 000 00011123
Q ss_pred hHHHHhh--hcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEec
Q 001646 206 EKASFVN--WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVF 283 (1038)
Q Consensus 206 kl~~lI~--~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvf 283 (1038)
.+...+. ..++|+||++.......+..... +..++|+++++|+.......... .........+..++.+++
T Consensus 82 ~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~------~~~~~~~~~~~~~d~ii~ 154 (377)
T cd03798 82 ALLKLLKLKRFRPDLIHAHFAYPDGFAAALLK-RKLGIPLVVTLHGSDVNLLPRKR------LLRALLRRALRRADAVIA 154 (377)
T ss_pred HHHHHHhcccCCCCEEEEeccchHHHHHHHHH-HhcCCCEEEEeecchhcccCchh------hHHHHHHHHHhcCCeEEe
Confidence 3455676 78999999997666434444443 35668999999973332110000 111222334556666666
Q ss_pred cCCcccccccc--CCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHH
Q 001646 284 PDYVLPMMYSA--FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALL 361 (1038)
Q Consensus 284 ps~~l~viyn~--vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~ 361 (1038)
.+......... +...++.++|+ ++|...+...... .. ...+...+.++++++| ++.+. ||++.+++|+.
T Consensus 155 ~s~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~---~~-~~~~~~~~~~~i~~~g-~~~~~---k~~~~li~~~~ 225 (377)
T cd03798 155 VSEALADELKALGIDPEKVTVIPN-GVDTERFSPADRA---EA-RKLGLPEDKKVILFVG-RLVPR---KGIDYLIEALA 225 (377)
T ss_pred CCHHHHHHHHHhcCCCCceEEcCC-CcCcccCCCcchH---HH-HhccCCCCceEEEEec-cCccc---cCHHHHHHHHH
Confidence 65542222111 45678889984 6776433322211 11 3345566788999999 66666 89999999999
Q ss_pred HchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCc
Q 001646 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTF 438 (1038)
Q Consensus 362 ~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGF 438 (1038)
.+.+++++ ++|+|+| |+.. +.++++++++++.+ +|.+.|+. +++.++|+.||++++||..| |+
T Consensus 226 ~~~~~~~~-------~~l~i~g~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~--~~ 291 (377)
T cd03798 226 RLLKKRPD-------VHLVIVGDGPLR----EALEALAAELGLED-RVTFLGAVPHEEVPAYYAAADVFVLPSLRE--GF 291 (377)
T ss_pred HHHhcCCC-------eEEEEEcCCcch----HHHHHHHHhcCCcc-eEEEeCCCCHHHHHHHHHhcCeeecchhhc--cC
Confidence 99887777 9999999 6554 67778888888888 89999987 67999999999999999997 79
Q ss_pred CHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHH
Q 001646 439 PEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALET 517 (1038)
Q Consensus 439 PlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~i 517 (1038)
|++++|||++|+|||+++.++..+++.++.+|+++++.|+++++++|.+++++ +.. +++.++++.+ ++|+|+.+
T Consensus 292 ~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~--~~~~~~~~~~~~~~s~~~~ 366 (377)
T cd03798 292 GLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLAD---PWL--RLGRAARRRVAERFSWENV 366 (377)
T ss_pred ChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcC---cHH--HHhHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999 766 6777777777 77999999
Q ss_pred HHHHHHHHHHh
Q 001646 518 IEGYAMLLENV 528 (1038)
Q Consensus 518 a~~Y~~Lye~v 528 (1038)
++.+.++|+++
T Consensus 367 ~~~~~~~~~~l 377 (377)
T cd03798 367 AERLLELYREV 377 (377)
T ss_pred HHHHHHHHhhC
Confidence 99999998763
No 50
>PLN02949 transferase, transferring glycosyl groups
Probab=99.96 E-value=8.7e-28 Score=282.81 Aligned_cols=359 Identities=14% Similarity=0.082 Sum_probs=240.8
Q ss_pred CCceEEEEcCCCCCC-hHHHHHHHHHHHHHHcCC--eEEEEEcCCCcchh-----hhhhcCceE------EEc------c
Q 001646 143 RKPQLALVFPDLLID-PQQLQMVTIAIALREIGY--AIQVYSLEDGRAHE-----VWRNIGVPV------AIL------Q 202 (1038)
Q Consensus 143 R~prIaiV~~~L~iG-Gae~~v~~LAkaL~k~G~--eV~V~t~~~g~~~~-----~~e~~gI~v------~~l------~ 202 (1038)
++++++|++|+++.| |+|+++...+.+|++.|+ +|.|++...++... ..+.+++.+ ..+ +
T Consensus 32 ~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~~~ 111 (463)
T PLN02949 32 RKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKWIE 111 (463)
T ss_pred CCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEeccccccc
Confidence 467999999999887 999999999999999998 77777755333221 223445421 111 1
Q ss_pred cc---------hhHH------HHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhH-HhHHHhh------
Q 001646 203 TG---------REKA------SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLA-TRARNYA------ 260 (1038)
Q Consensus 203 ~~---------rkl~------~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~-~~lek~~------ 260 (1038)
.. ..+. ..+... ++.|++++.... +...++ + ..++|+++.+|..... ..+.+..
T Consensus 112 ~~~~~~~t~~~~~~~~~~l~~~~~~~~-~p~v~vDt~~~~-~~~pl~-~-~~~~~v~~yvH~p~~~~dm~~~v~~~~~~~ 187 (463)
T PLN02949 112 EETYPRFTMIGQSLGSVYLAWEALCKF-TPLYFFDTSGYA-FTYPLA-R-LFGCKVVCYTHYPTISSDMISRVRDRSSMY 187 (463)
T ss_pred cccCCceehHHHHHHHHHHHHHHHHhc-CCCEEEeCCCcc-cHHHHH-H-hcCCcEEEEEeCCcchHHHHHHHhhccccc
Confidence 00 0000 012113 445777766431 222222 1 3368999999973222 1111110
Q ss_pred -------hh----c----hhHHHH-HHHHHHHhcceEeccCCccc-cccccC-CCCCEEEcCCCCCCccccccccchhhH
Q 001646 261 -------SS----G----QLELLN-DWKKVFNRATVVVFPDYVLP-MMYSAF-DAGNYYVIPGSPAKAWEADTNMDLYND 322 (1038)
Q Consensus 261 -------~~----~----~d~lIs-~~~~~~~~a~~vvfps~~l~-viyn~v-d~~ki~VIPgsgVD~~~f~~~~~~~k~ 322 (1038)
.. . ....+. .+......++.++..+.... .+.... ...++.++++ |+|...+...+.
T Consensus 188 ~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp-~vd~~~~~~~~~---- 262 (463)
T PLN02949 188 NNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYP-PCDTSGLQALPL---- 262 (463)
T ss_pred CccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcC-CCCHHHcccCCc----
Confidence 00 0 000000 11222245566665554422 222212 1245666663 555532211110
Q ss_pred HHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCC--CCchHHHHHHHHH
Q 001646 323 TVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDS--TSNYSVVIEAIAH 399 (1038)
Q Consensus 323 ~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~--~e~Y~~~LeeLa~ 399 (1038)
...+++.+++++| ++.++ ||++++|+|+..+.++.++ ..++++|+|+| |.. ...|.+.++++++
T Consensus 263 ------~~~~~~~~il~vG-R~~~~---Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~~~eL~~la~ 329 (463)
T PLN02949 263 ------ERSEDPPYIISVA-QFRPE---KAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEERLQKLKDRAK 329 (463)
T ss_pred ------cccCCCCEEEEEE-eeecc---CCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHHHHHHHHHHH
Confidence 1123456899999 88888 9999999999988764321 12349999999 432 2346678999999
Q ss_pred HcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccc-ccccc---CccEEEE
Q 001646 400 NLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR-KYVDD---RVNGYLF 473 (1038)
Q Consensus 400 qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~-EiV~d---G~nGlLv 473 (1038)
++++++ +|.|+|+. +++.++|+.||++|+||..| |||++++||||+|+|||+++.||.. |+|.+ |.+|+++
T Consensus 330 ~l~L~~-~V~f~g~v~~~el~~ll~~a~~~v~~s~~E--~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~ 406 (463)
T PLN02949 330 ELGLDG-DVEFHKNVSYRDLVRLLGGAVAGLHSMIDE--HFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLA 406 (463)
T ss_pred HcCCCC-cEEEeCCCCHHHHHHHHHhCcEEEeCCccC--CCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccC
Confidence 999998 99999987 88999999999999999988 7999999999999999999999975 67754 6789997
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 001646 474 PKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 474 ~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
+ |+++++++|.+++++. ++.+++|+++|++.+++|+++++++++.+.++++++
T Consensus 407 ~--~~~~la~ai~~ll~~~--~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 407 T--TVEEYADAILEVLRMR--ETERLEIAAAARKRANRFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred C--CHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 4 8999999999999840 567789999999999889999999999999998765
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.96 E-value=4.7e-28 Score=266.53 Aligned_cols=326 Identities=20% Similarity=0.203 Sum_probs=226.6
Q ss_pred eEEEEcCCC---CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEc---------------------
Q 001646 146 QLALVFPDL---LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAIL--------------------- 201 (1038)
Q Consensus 146 rIaiV~~~L---~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l--------------------- 201 (1038)
||+++.+.. ..||++.++..++++|.++||+|.+++....................
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 466776654 35899999999999999999999999986644222111111111110
Q ss_pred --ccchhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcc
Q 001646 202 --QTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRAT 279 (1038)
Q Consensus 202 --~~~rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~ 279 (1038)
.....+..+++..+||+||+++........... .+..++|+|+++|+.............. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~-~~~~~~~~i~~~hd~~~~~~~~~~~~~~--------------~d 145 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRA-ARDRGIPIVLTLHDYWLICPRQGLFKKG--------------GD 145 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHH-HHhcCCCEEEEEeeeeeecchhhhhccC--------------CC
Confidence 111234455677899999999875432222222 2345699999999722110000000000 03
Q ss_pred eEeccCCccc--cccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHH
Q 001646 280 VVVFPDYVLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALIL 357 (1038)
Q Consensus 280 ~vvfps~~l~--viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLL 357 (1038)
.++..+.... .........++.++++ |+|...+..... +.+.++++++++| ++... ||++.++
T Consensus 146 ~ii~~s~~~~~~~~~~~~~~~~~~vi~n-~~~~~~~~~~~~----------~~~~~~~~i~~~G-~~~~~---k~~~~li 210 (359)
T cd03823 146 AVIAPSRFLLDRYVANGLFAEKISVIRN-GIDLDRAKRPRR----------APPGGRLRFGFIG-QLTPH---KGVDLLL 210 (359)
T ss_pred EEEEeCHHHHHHHHHcCCCccceEEecC-CcChhhcccccc----------CCCCCceEEEEEe-cCccc---cCHHHHH
Confidence 3333322211 1111222457888884 677633221110 3456678899999 67666 8999999
Q ss_pred HHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEccc-C
Q 001646 358 RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSF-L 433 (1038)
Q Consensus 358 eAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~-~ 433 (1038)
+|+..+.+ ++ ++|+++| |+.. ...+... +..+ +|.++|+. +++.++|+.||++|+||. .
T Consensus 211 ~~~~~l~~--~~-------~~l~i~G~~~~~----~~~~~~~---~~~~-~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~ 273 (359)
T cd03823 211 EAFKRLPR--GD-------IELVIVGNGLEL----EEESYEL---EGDP-RVEFLGAYPQEEIDDFYAEIDVLVVPSIWP 273 (359)
T ss_pred HHHHHHHh--cC-------cEEEEEcCchhh----hHHHHhh---cCCC-eEEEeCCCCHHHHHHHHHhCCEEEEcCccc
Confidence 99999876 45 8999999 5543 1211111 4555 79999987 899999999999999997 4
Q ss_pred CcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhC
Q 001646 434 EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLM 513 (1038)
Q Consensus 434 EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs 513 (1038)
| |+|++++|||+||+|||+|+.++..|++.++.+|++++++|+++++++|.+++++ ++.++.+++++++..+.
T Consensus 274 e--~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~-- 346 (359)
T cd03823 274 E--NFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDD---PDLLERLRAGIEPPRSI-- 346 (359)
T ss_pred C--CCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC---hHHHHHHHHhHHHhhhH--
Confidence 5 8999999999999999999999999999999899999999999999999999999 99999999999887754
Q ss_pred HHHHHHHHHHHHH
Q 001646 514 ALETIEGYAMLLE 526 (1038)
Q Consensus 514 ~e~ia~~Y~~Lye 526 (1038)
++++++|.++|+
T Consensus 347 -~~~~~~~~~~~~ 358 (359)
T cd03823 347 -EDQAEEYLKLYR 358 (359)
T ss_pred -HHHHHHHHHHhh
Confidence 888898888875
No 52
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.96 E-value=3.8e-28 Score=268.97 Aligned_cols=343 Identities=13% Similarity=0.096 Sum_probs=242.1
Q ss_pred eEEEEcCCCCC---ChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceE------------EEcccchhHHHH
Q 001646 146 QLALVFPDLLI---DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPV------------AILQTGREKASF 210 (1038)
Q Consensus 146 rIaiV~~~L~i---GGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v------------~~l~~~rkl~~l 210 (1038)
+|+++...+.. ||++.++.++++.|.+.|++|.+++................. ............
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 46677776654 999999999999999999999999987643221111110000 000000111222
Q ss_pred hhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc-c
Q 001646 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-P 289 (1038)
Q Consensus 211 I~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l-~ 289 (1038)
+...++|+||+++.... .. +..++|+++++|+.........................+..++.+++.+... .
T Consensus 81 ~~~~~~Dii~~~~~~~~-~~------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 153 (365)
T cd03809 81 LLLLGLDLLHSPHNTAP-LL------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKR 153 (365)
T ss_pred hhhcCCCeeeecccccC-cc------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHH
Confidence 34468999999998773 22 3567999999997221111000000001111223334566777777766542 2
Q ss_pred cccc--cCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 001646 290 MMYS--AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (1038)
Q Consensus 290 viyn--~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~ 367 (1038)
.+.. ..+..++.++|+ +++...+.... ... +.......++++|+++| ++.+. ||++.+++|+..+.+..
T Consensus 154 ~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~---~~~-~~~~~~~~~~~~i~~~G-~~~~~---K~~~~~l~~~~~~~~~~ 224 (365)
T cd03809 154 DLLRYLGVPPDKIVVIPL-GVDPRFRPPPA---EAE-VLRALYLLPRPYFLYVG-TIEPR---KNLERLLEAFARLPAKG 224 (365)
T ss_pred HHHHHhCcCHHHEEeecc-ccCccccCCCc---hHH-HHHHhcCCCCCeEEEeC-CCccc---cCHHHHHHHHHHHHHhc
Confidence 2222 224567888884 67663332211 111 33445566778999999 77777 89999999999999887
Q ss_pred ccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHH
Q 001646 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (1038)
Q Consensus 368 p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLE 444 (1038)
++ ++|+|+| +.... ....+..+.+++.+ +|.++|+. +++.++|+.||++|+||..| |+|++++|
T Consensus 225 ~~-------~~l~i~G~~~~~~---~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e--~~~~~~~E 291 (365)
T cd03809 225 PD-------PKLVIVGKRGWLN---EELLARLRELGLGD-RVRFLGYVSDEELAALYRGARAFVFPSLYE--GFGLPVLE 291 (365)
T ss_pred CC-------CCEEEecCCcccc---HHHHHHHHHcCCCC-eEEECCCCChhHHHHHHhhhhhhcccchhc--cCCCCHHH
Confidence 66 8999999 44321 23333336678887 89999988 88999999999999999998 79999999
Q ss_pred HHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 001646 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (1038)
Q Consensus 445 AMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~ 522 (1038)
||++|+|||+++.|+..|++.+ +|++++++|+++++++|.++++| ++.+.++++++++.+++|+|+++++.|.
T Consensus 292 a~a~G~pvI~~~~~~~~e~~~~--~~~~~~~~~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 292 AMACGTPVIASNISSLPEVAGD--AALYFDPLDPEALAAAIERLLED---PALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred HhcCCCcEEecCCCCccceecC--ceeeeCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999999999999855 68999999999999999999999 9999999999998889999999999875
No 53
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.96 E-value=7.4e-27 Score=271.99 Aligned_cols=345 Identities=17% Similarity=0.076 Sum_probs=233.7
Q ss_pred eEEEEcCCCCCC-hHHHHHHHHHHHHHHc--CCeEEEEEcCCCcch-hhh----hhc------CceEEEcc-c-------
Q 001646 146 QLALVFPDLLID-PQQLQMVTIAIALREI--GYAIQVYSLEDGRAH-EVW----RNI------GVPVAILQ-T------- 203 (1038)
Q Consensus 146 rIaiV~~~L~iG-Gae~~v~~LAkaL~k~--G~eV~V~t~~~g~~~-~~~----e~~------gI~v~~l~-~------- 203 (1038)
.|+|++|+++.| |+|+++...+.+|++. |++|+|+|....... ... +.+ ++++..+. .
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 478999999998 9999999999999998 899999998764422 110 111 11211110 0
Q ss_pred --ch---------hHHH---HhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhH-HhHHHhh--------
Q 001646 204 --GR---------EKAS---FVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLA-TRARNYA-------- 260 (1038)
Q Consensus 204 --~r---------kl~~---lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~-~~lek~~-------- 260 (1038)
.+ .+.. .+...+||+|+.++....++.... .+.++|+|+.+|-.... ..+.+..
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~---~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~ 158 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVR---LLGGCPVGAYVHYPTISTDMLQKVRSREASYNN 158 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHH---HhcCCeEEEEecCCcchHHHHHHHhhccccccC
Confidence 00 1111 122347999988875442222211 13367999999952111 1111110
Q ss_pred -----hhc---hhHHH------HHHHHHHHhcceEeccCCccc-cccccC-CCCCEEEcCCCCCCccccccccchhhHHH
Q 001646 261 -----SSG---QLELL------NDWKKVFNRATVVVFPDYVLP-MMYSAF-DAGNYYVIPGSPAKAWEADTNMDLYNDTV 324 (1038)
Q Consensus 261 -----~~~---~d~lI------s~~~~~~~~a~~vvfps~~l~-viyn~v-d~~ki~VIPgsgVD~~~f~~~~~~~k~~l 324 (1038)
... .-+.+ ..+......++.+++++.... .+.... ...++.+|++ |+|...+.....
T Consensus 159 ~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~-gvd~~~~~~~~~------ 231 (419)
T cd03806 159 SATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYP-PCDVEELLKLPL------ 231 (419)
T ss_pred ccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcC-CCCHHHhccccc------
Confidence 000 00111 133445677888777765522 222222 2246788874 677643322111
Q ss_pred HHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCC--CCchHHHHHHHHHHc
Q 001646 325 RVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDS--TSNYSVVIEAIAHNL 401 (1038)
Q Consensus 325 Reklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~--~e~Y~~~LeeLa~qL 401 (1038)
....+.++|+++| ++.++ ||++.+|+|++.+.++.|+ ...++++|+|+| |.. ...+.+.++++++++
T Consensus 232 ----~~~~~~~~il~vg-r~~~~---K~~~~li~A~~~l~~~~~~--~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l 301 (419)
T cd03806 232 ----DEKTRENQILSIA-QFRPE---KNHPLQLRAFAKLLKRLPE--EIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKEL 301 (419)
T ss_pred ----ccccCCcEEEEEE-eecCC---CCHHHHHHHHHHHHHhCcc--cccCceEEEEEcCCCCcccHHHHHHHHHHHHHh
Confidence 1234567999999 88888 9999999999999877653 112359999999 433 224778899999999
Q ss_pred CCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccc-ccccc---cCccEEEEcC
Q 001646 402 HYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI-RKYVD---DRVNGYLFPK 475 (1038)
Q Consensus 402 gL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi-~EiV~---dG~nGlLv~~ 475 (1038)
++.+ +|.|+|.. +++..+|+.||++|+||..| +||++++||||||+|||+++.||. .+++. ++.+|++++
T Consensus 302 ~l~~-~V~f~g~v~~~~l~~~l~~adv~v~~s~~E--~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~- 377 (419)
T cd03806 302 GLED-KVEFVVNAPFEELLEELSTASIGLHTMWNE--HFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS- 377 (419)
T ss_pred CCCC-eEEEecCCCHHHHHHHHHhCeEEEECCccC--CcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC-
Confidence 9998 89999975 89999999999999999998 799999999999999999999875 47777 899999974
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHhhCHHHHH
Q 001646 476 ENIKALTHIILQVITNGKISPFAR-NIASIGRRSVKNLMALETI 518 (1038)
Q Consensus 476 ~D~eaLAeAI~~LLsDg~l~elr~-~mg~~are~ak~Fs~e~ia 518 (1038)
|++++|++|.+++++ ++... .+++++++.+++|+++.+.
T Consensus 378 -d~~~la~ai~~ll~~---~~~~~~~~~~~~~~~~~~fs~~~f~ 417 (419)
T cd03806 378 -TAEEYAEAIEKILSL---SEEERLRIRRAARSSVKRFSDEEFE 417 (419)
T ss_pred -CHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhhCHHHhc
Confidence 999999999999997 66544 5655555555889998764
No 54
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.96 E-value=6.6e-27 Score=273.35 Aligned_cols=340 Identities=11% Similarity=0.085 Sum_probs=233.6
Q ss_pred CCceEEEEcCCC--CCChHHHHHHHHHHHHHHcC-CeEEEEEcCCCcc----------------hhh-----h--hh---
Q 001646 143 RKPQLALVFPDL--LIDPQQLQMVTIAIALREIG-YAIQVYSLEDGRA----------------HEV-----W--RN--- 193 (1038)
Q Consensus 143 R~prIaiV~~~L--~iGGae~~v~~LAkaL~k~G-~eV~V~t~~~g~~----------------~~~-----~--e~--- 193 (1038)
.+.+|+||+... .++|....+..++..|+++| |+|+|+++..... ... + +.
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 468999999976 47999999999999999999 7999998854210 000 0 00
Q ss_pred -cCceEEE-----------cccchhHHHHhhhcCCcEEEEcCCchhHHH--HHHHhCCCCCCCEEEEEeCchhHHhHHHh
Q 001646 194 -IGVPVAI-----------LQTGREKASFVNWLNYDGILVNSLEAKVVI--SNIMQEPFKSLPLVWTIHEGTLATRARNY 259 (1038)
Q Consensus 194 -~gI~v~~-----------l~~~rkl~~lI~~~kpDIVhvhs~~~~~~l--a~La~~~~~gIPvI~tiHg~~L~~~lek~ 259 (1038)
.++++.. +.....+.+.++..+||+||++++...+.+ +....+ ..+ ++|.++|.+... .+..+
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~-k~~-~vV~tyHT~y~~-Y~~~~ 159 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKT-KFR-LVIGIVHTNYLE-YVKRE 159 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHh-cCC-cEEEEECCChHH-HHHHh
Confidence 0011100 111234566778899999999999986664 333333 233 488899973321 12111
Q ss_pred h----hhchhHHHHHHHHHHHhcceEeccCCccccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCC--
Q 001646 260 A----SSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPD-- 333 (1038)
Q Consensus 260 ~----~~~~d~lIs~~~~~~~~a~~vvfps~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d-- 333 (1038)
. .......+..+-.. ..++.++.|+....-+ . ......+ .|+|...|.. ..+. .+.... +.+
T Consensus 160 ~~g~~~~~l~~~~~~~~~r-~~~d~vi~pS~~~~~l----~-~~~i~~v-~GVd~~~f~~---~~~~-~~~~~~-~~~~~ 227 (462)
T PLN02846 160 KNGRVKAFLLKYINSWVVD-IYCHKVIRLSAATQDY----P-RSIICNV-HGVNPKFLEI---GKLK-LEQQKN-GEQAF 227 (462)
T ss_pred ccchHHHHHHHHHHHHHHH-HhcCEEEccCHHHHHH----h-hCEEecC-ceechhhcCC---Cccc-HhhhcC-CCCCc
Confidence 1 11111111111111 1267777776532211 1 1222323 4788743332 2111 233332 333
Q ss_pred CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEcc
Q 001646 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (1038)
Q Consensus 334 ~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG 412 (1038)
.+.++|+| |+..+ ||++.||+|+..+.+..++ ++|+|+| |+.. +.++++++++++.. +| |.|
T Consensus 228 ~~~~l~vG-RL~~e---K~~~~Li~a~~~l~~~~~~-------~~l~ivGdGp~~----~~L~~~a~~l~l~~-~v-f~G 290 (462)
T PLN02846 228 TKGAYYIG-KMVWS---KGYKELLKLLHKHQKELSG-------LEVDLYGSGEDS----DEVKAAAEKLELDV-RV-YPG 290 (462)
T ss_pred ceEEEEEe-cCccc---CCHHHHHHHHHHHHhhCCC-------eEEEEECCCccH----HHHHHHHHhcCCcE-EE-ECC
Confidence 34689999 88888 9999999999999887777 9999999 9887 88999999999876 55 888
Q ss_pred ChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcC
Q 001646 413 AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNG 492 (1038)
Q Consensus 413 ~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg 492 (1038)
.. +..++|+.+|+||+||..| |||++++||||||+|||+++.++ .+++.++.||++++ |+++++++|..++.+
T Consensus 291 ~~-~~~~~~~~~DvFv~pS~~E--t~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~--~~~~~a~ai~~~l~~- 363 (462)
T PLN02846 291 RD-HADPLFHDYKVFLNPSTTD--VVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYD--DGKGFVRATLKALAE- 363 (462)
T ss_pred CC-CHHHHHHhCCEEEECCCcc--cchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecC--CHHHHHHHHHHHHcc-
Confidence 64 5568999999999999999 79999999999999999999998 59999999999984 899999999999987
Q ss_pred CCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 001646 493 KISPFARNIASIGRRSVKNLMALETIEGYAMLLENV 528 (1038)
Q Consensus 493 ~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~Lye~v 528 (1038)
+. ..++.+++ +.|+|+.+++++.++++--
T Consensus 364 --~~--~~~~~~a~---~~~SWe~~~~~l~~~~~~~ 392 (462)
T PLN02846 364 --EP--APLTDAQR---HELSWEAATERFLRVADLD 392 (462)
T ss_pred --Cc--hhHHHHHH---HhCCHHHHHHHHHHHhccC
Confidence 43 22333222 5899999999999999754
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.96 E-value=5.2e-27 Score=272.74 Aligned_cols=347 Identities=12% Similarity=0.062 Sum_probs=225.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch-hhhhhcCceEEEcccch--h---------H------
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH-EVWRNIGVPVAILQTGR--E---------K------ 207 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~-~~~e~~gI~v~~l~~~r--k---------l------ 207 (1038)
|+.+++.. .+|.+..+..+++.|.++||+|+|++....... ......++.+..+.... . +
T Consensus 5 ~~~~~~~~--~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T cd03816 5 RVCVLVLG--DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVLWQ 82 (415)
T ss_pred EEEEEEec--ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHHHHHHHHH
Confidence 44444442 255556668899999999999999998653322 22345566666654432 0 0
Q ss_pred -----HHHhhhcCCcEEEEcCCchhH-H-HHHHHhCCCCCCCEEEEEeCchhHHhHHHhh-hhchhHHHHHHH-HHHHhc
Q 001646 208 -----ASFVNWLNYDGILVNSLEAKV-V-ISNIMQEPFKSLPLVWTIHEGTLATRARNYA-SSGQLELLNDWK-KVFNRA 278 (1038)
Q Consensus 208 -----~~lI~~~kpDIVhvhs~~~~~-~-la~La~~~~~gIPvI~tiHg~~L~~~lek~~-~~~~d~lIs~~~-~~~~~a 278 (1038)
..++...+||+||+|.+.... . .+.++ .+..++|+|+++|+........... ......+....+ ..++.+
T Consensus 83 ~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~-~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 161 (415)
T cd03816 83 FFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLY-CLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRLA 161 (415)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHH-HHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhhcC
Confidence 002334689999998755421 2 23333 2345789999999732110000000 000011222222 255667
Q ss_pred ceEeccCCccc--cccccCCCCCEEEcCCCCCCccccccccchh-hHHHHH-------------hhCC-CCCCEEEEEEe
Q 001646 279 TVVVFPDYVLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-NDTVRV-------------KMGF-KPDDLVIAIVG 341 (1038)
Q Consensus 279 ~~vvfps~~l~--viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~-k~~lRe-------------klgi-~~d~~vIL~VG 341 (1038)
+.++..+.... +...+++.+++.+|+| +. ...+.+..... ...... ..+. +++..+++++|
T Consensus 162 d~ii~vS~~~~~~l~~~~~~~~ki~vI~N-g~-~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~g 239 (415)
T cd03816 162 DYNLCVTKAMKEDLQQFNNWKIRATVLYD-RP-PEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSST 239 (415)
T ss_pred CEeeecCHHHHHHHHhhhccCCCeeecCC-CC-HHHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEec
Confidence 87777665521 2223466789999996 43 22233322211 111111 1122 23445777788
Q ss_pred cccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHH
Q 001646 342 TQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVD 418 (1038)
Q Consensus 342 srl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~ 418 (1038)
++.+. ||++.+++|+..+.+.... ....++++|+|+| |+.. +.++++++++++++ .+.+.|+. +++.
T Consensus 240 -rl~~~---K~~~~li~A~~~l~~~~~~-~~~~~~i~l~ivG~G~~~----~~l~~~~~~~~l~~-~~~~~g~~~~~~~~ 309 (415)
T cd03816 240 -SWTPD---EDFGILLDALVAYEKSAAT-GPKLPKLLCIITGKGPLK----EKYLERIKELKLKK-VTIRTPWLSAEDYP 309 (415)
T ss_pred -cccCC---CCHHHHHHHHHHHHHhhcc-cccCCCEEEEEEecCccH----HHHHHHHHHcCCCc-EEEEcCcCCHHHHH
Confidence 78777 9999999999998753210 0011239999999 8765 88999999999987 56666754 8999
Q ss_pred HHHHhcCEEEEcccC-CcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHH
Q 001646 419 SVLNTADVVIYGSFL-EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPF 497 (1038)
Q Consensus 419 ~lLaaADIfVlPS~~-EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~el 497 (1038)
.+|++||++|.|+.. +..|+|++++||||||+|||+|+.||++|+|.++.+|++++ |+++++++|..+++|..-++.
T Consensus 310 ~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~ 387 (415)
T cd03816 310 KLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGK 387 (415)
T ss_pred HHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHH
Confidence 999999999975422 11279999999999999999999999999999999999994 899999999999987000367
Q ss_pred HHHHHHHHHHHH
Q 001646 498 ARNIASIGRRSV 509 (1038)
Q Consensus 498 r~~mg~~are~a 509 (1038)
+++|+++|++.+
T Consensus 388 ~~~m~~~~~~~~ 399 (415)
T cd03816 388 LNSLKKGAQEES 399 (415)
T ss_pred HHHHHHHHHHhh
Confidence 789999999888
No 56
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.95 E-value=2.1e-26 Score=273.48 Aligned_cols=277 Identities=15% Similarity=0.136 Sum_probs=202.4
Q ss_pred hhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc-ccc
Q 001646 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-LPM 290 (1038)
Q Consensus 212 ~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~-l~v 290 (1038)
...++|++|++.+... ..+ +. .....+|++.++|+..+...................-.....++.++.++.. ...
T Consensus 208 ~~~~~di~i~dr~~~~-~~~-~~-~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~~ 284 (500)
T TIGR02918 208 NLTKKDIIILDRSTGI-GQA-VL-ENKGPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQI 284 (500)
T ss_pred hCCCCCEEEEcCCccc-chH-HH-hcCCCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHHH
Confidence 3458999999887652 222 22 2355689999999733221100000000000000001123345666555543 111
Q ss_pred ccc-----cCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchh
Q 001646 291 MYS-----AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS 365 (1038)
Q Consensus 291 iyn-----~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~ 365 (1038)
+.. .....++.+||+ |++...+. +. ...+...|+++| |+.+. ||++.+|+|+..+.+
T Consensus 285 l~~~~~~~~~~~~ki~viP~-g~~~~~~~---~~----------~~r~~~~il~vG-rl~~~---Kg~~~li~A~~~l~~ 346 (500)
T TIGR02918 285 LKNQFKKYYNIEPRIYTIPV-GSLDELQY---PE----------QERKPFSIITAS-RLAKE---KHIDWLVKAVVKAKK 346 (500)
T ss_pred HHHHhhhhcCCCCcEEEEcC-CCcccccC---cc----------cccCCeEEEEEe-ccccc---cCHHHHHHHHHHHHh
Confidence 111 122467889985 54431111 10 122346899999 78887 999999999999998
Q ss_pred hcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHH
Q 001646 366 EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (1038)
Q Consensus 366 k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLE 444 (1038)
+.|+ ++|+|+| |+.. +.++++++++++.+ +|.|+|.. ++.++|+.||++|+||..| |||++++|
T Consensus 347 ~~p~-------~~l~i~G~G~~~----~~l~~~i~~~~l~~-~V~f~G~~-~~~~~~~~adv~v~pS~~E--gfgl~~lE 411 (500)
T TIGR02918 347 SVPE-------LTFDIYGEGGEK----QKLQKIINENQAQD-YIHLKGHR-NLSEVYKDYELYLSASTSE--GFGLTLME 411 (500)
T ss_pred hCCC-------eEEEEEECchhH----HHHHHHHHHcCCCC-eEEEcCCC-CHHHHHHhCCEEEEcCccc--cccHHHHH
Confidence 8888 9999999 7764 78999999999998 99999976 8999999999999999998 89999999
Q ss_pred HHHcCCCEEEcCCc-ccccccccCccEEEEcCC----C----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHH
Q 001646 445 ALCFRKPIIAPDLS-NIRKYVDDRVNGYLFPKE----N----IKALTHIILQVITNGKISPFARNIASIGRRSVKNLMAL 515 (1038)
Q Consensus 445 AMA~GkPVIaTdvg-Gi~EiV~dG~nGlLv~~~----D----~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e 515 (1038)
|||||+|||+++++ |.+|+|.+|.+|++++++ | +++||++|.+++ + ++.+++|+++|++.+++|+++
T Consensus 412 Ama~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~---~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 412 AVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-N---SNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999986 899999999999999843 3 899999999999 4 467889999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 001646 516 ETIEGYAMLLENV 528 (1038)
Q Consensus 516 ~ia~~Y~~Lye~v 528 (1038)
.++++|.++++++
T Consensus 488 ~v~~~w~~ll~~~ 500 (500)
T TIGR02918 488 NIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998763
No 57
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.94 E-value=5e-25 Score=253.73 Aligned_cols=331 Identities=14% Similarity=0.129 Sum_probs=220.9
Q ss_pred CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc--h--hhhhhcCceEEEcc-----------------------------
Q 001646 156 IDPQQLQMVTIAIALREIGYAIQVYSLEDGRA--H--EVWRNIGVPVAILQ----------------------------- 202 (1038)
Q Consensus 156 iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~--~--~~~e~~gI~v~~l~----------------------------- 202 (1038)
.+|....+.+++++|.+. |+|++++..+.+. . .......-.+..++
T Consensus 13 ~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 91 (397)
T TIGR03087 13 NKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTGEPLSLPYYRSRR 91 (397)
T ss_pred CCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCCCCCcchhhCCHH
Confidence 467789999999999775 8999999875321 1 11111111111110
Q ss_pred cchhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhh-----hhc-----hhHHHHHHH
Q 001646 203 TGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYA-----SSG-----QLELLNDWK 272 (1038)
Q Consensus 203 ~~rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~-----~~~-----~d~lIs~~~ 272 (1038)
..+.+...++..++|+||+++.... ..+.....++|+|++.|+.....|..... ... ...+....+
T Consensus 92 ~~~~l~~~~~~~~~D~v~~~~~~~~----~~~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 167 (397)
T TIGR03087 92 LARWVNALLAAEPVDAIVVFSSAMA----QYVTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYER 167 (397)
T ss_pred HHHHHHHHHhhCCCCEEEEeccccc----eeccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 1112334455579999999976442 11211245689999999622111111000 000 011112233
Q ss_pred HHHHhcceEeccCCccc-ccc--ccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccc
Q 001646 273 KVFNRATVVVFPDYVLP-MMY--SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGL 349 (1038)
Q Consensus 273 ~~~~~a~~vvfps~~l~-viy--n~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KG 349 (1038)
..+..++.+++.+.... .+. ......++.+||+ |+|...|.+.... ...+.++.++|+++| ++.+.
T Consensus 168 ~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipn-gvd~~~f~~~~~~-------~~~~~~~~~~ilf~G-~l~~~-- 236 (397)
T TIGR03087 168 AIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPN-GVDADFFSPDRDY-------PNPYPPGKRVLVFTG-AMDYW-- 236 (397)
T ss_pred HHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeec-ccchhhcCCCccc-------cCCCCCCCcEEEEEE-ecCCc--
Confidence 46677887777665522 111 2234568889984 8887544322111 011234567899999 77776
Q ss_pred cccHHHHH----HHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhc
Q 001646 350 WLEHALIL----RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTA 424 (1038)
Q Consensus 350 iKgldlLL----eAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaA 424 (1038)
||++.++ +++..+.++.|+ ++|+|+| |+. ..++ +++..+ +|.|+|+++++..+|+.|
T Consensus 237 -k~~~~l~~~~~~~~~~l~~~~p~-------~~l~ivG~g~~-----~~~~----~l~~~~-~V~~~G~v~~~~~~~~~a 298 (397)
T TIGR03087 237 -PNIDAVVWFAERVFPAVRARRPA-------AEFYIVGAKPS-----PAVR----ALAALP-GVTVTGSVADVRPYLAHA 298 (397)
T ss_pred -cCHHHHHHHHHHHHHHHHHHCCC-------cEEEEECCCCh-----HHHH----HhccCC-CeEEeeecCCHHHHHHhC
Confidence 7777666 456666666777 9999999 654 3333 334445 699999999999999999
Q ss_pred CEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 001646 425 DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASI 504 (1038)
Q Consensus 425 DIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~ 504 (1038)
|++|+||...+ |+|++++||||||+|||+|+.++. .+...+.+|++++ +|+++++++|.++++| ++.+++|+++
T Consensus 299 dv~v~Ps~~~e-G~~~~~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv~-~~~~~la~ai~~ll~~---~~~~~~~~~~ 372 (397)
T TIGR03087 299 AVAVAPLRIAR-GIQNKVLEAMAMAKPVVASPEAAE-GIDALPGAELLVA-ADPADFAAAILALLAN---PAEREELGQA 372 (397)
T ss_pred CEEEecccccC-CcccHHHHHHHcCCCEEecCcccc-cccccCCcceEeC-CCHHHHHHHHHHHHcC---HHHHHHHHHH
Confidence 99999997533 899999999999999999997542 3333445689887 8999999999999999 9999999999
Q ss_pred HHHHH-HhhCHHHHHHHHHHHHH
Q 001646 505 GRRSV-KNLMALETIEGYAMLLE 526 (1038)
Q Consensus 505 are~a-k~Fs~e~ia~~Y~~Lye 526 (1038)
|++.+ ++|+|+.+++++.++|+
T Consensus 373 ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 373 ARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999 67999999999998875
No 58
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.94 E-value=1.1e-24 Score=252.76 Aligned_cols=338 Identities=15% Similarity=0.086 Sum_probs=233.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhc---CceEEEccc--------------------
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNI---GVPVAILQT-------------------- 203 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~---gI~v~~l~~-------------------- 203 (1038)
+.+++.....+-.|..+.+=.+.|.+.+.+|.|+...-++........ ++.+..+..
T Consensus 2 ~~l~t~~~p~~~~~~f~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 81 (407)
T cd04946 2 LILLTNTFPGAKGESFIEPEIKYLSKSFDKIIILPTNVGKEREKVRPNGVSNIIISNYRQDKSRAKLIFLALSVFSLPFY 81 (407)
T ss_pred EEEEecCCCCCCcccccHHHHHHHHhcCCEEEEEecccccccccCCCccccceEEeecccchhhHHHHHHHHHhhhHHHH
Confidence 456666666666788888889999999999999976554322111111 122111110
Q ss_pred ---------ch----hH----HHH-------------h----hhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeC
Q 001646 204 ---------GR----EK----ASF-------------V----NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (1038)
Q Consensus 204 ---------~r----kl----~~l-------------I----~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg 249 (1038)
.. .. ... + ...++|++|.+.....+....++..+....++|.+.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~sy~~~~~~~~~~~l~~~~~~~~~i~~~Hg 161 (407)
T cd04946 82 KELLKKLKRRRKNIKYFLLLLYFIKRSILLKLKYLHLLIYNSIDGQGTVFYSYWLHETAYALALLKKEYLRKRVISRAHG 161 (407)
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceEEEEecCchHHHHHHHHHHhcCCceEEEEecc
Confidence 00 00 000 0 11355777776555533333444333333359999998
Q ss_pred chhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc-cccccc--cCCCCCEEEcCCCCCCccccccccchhhHHHHH
Q 001646 250 GTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-LPMMYS--AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRV 326 (1038)
Q Consensus 250 ~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~-l~viyn--~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lRe 326 (1038)
..+... ... .......+..+..++.+++.+.. ...+.. +...+++.++++ |++...+...
T Consensus 162 ~d~~~~--~~~----~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~-gv~~~~~~~~---------- 224 (407)
T cd04946 162 YDLYED--RYP----SGYIPLRRYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYL-GVSDPGIISK---------- 224 (407)
T ss_pred chhhhh--hcc----ccchHHHHHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEEC-CcccccccCC----------
Confidence 543311 010 01111222345667776666554 222222 233467778873 6665322110
Q ss_pred hhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCC
Q 001646 327 KMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPL 405 (1038)
Q Consensus 327 klgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d 405 (1038)
....+.+.++++| ++.+. ||++.+++|+..+.+++|+ .+++++++| |+.. +.+++++++++..+
T Consensus 225 --~~~~~~~~il~~G-rl~~~---Kg~~~li~a~~~l~~~~p~-----~~l~~~iiG~g~~~----~~l~~~~~~~~~~~ 289 (407)
T cd04946 225 --PSKDDTLRIVSCS-YLVPV---KRVDLIIKALAALAKARPS-----IKIKWTHIGGGPLE----DTLKELAESKPENI 289 (407)
T ss_pred --CCCCCCEEEEEee-ccccc---cCHHHHHHHHHHHHHhCCC-----ceEEEEEEeCchHH----HHHHHHHHhcCCCc
Confidence 1234578899999 88877 8999999999999987764 237788899 6665 77888888878877
Q ss_pred ceEEEccCh--hhHHHHHHh--cCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcC-CCHHH
Q 001646 406 GVVKHMAAE--GDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK-ENIKA 480 (1038)
Q Consensus 406 ~~V~flG~~--edV~~lLaa--ADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~-~D~ea 480 (1038)
+|.|+|++ +++.++|+. +|++++||..| |+|++++||||||+|||+|++||++|+|.++.+|+++++ +|+++
T Consensus 290 -~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~E--g~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~~~~~ 366 (407)
T cd04946 290 -SVNFTGELSNSEVYKLYKENPVDVFVNLSESE--GLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDPTPNE 366 (407)
T ss_pred -eEEEecCCChHHHHHHHhhcCCCEEEeCCccc--cccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCCCHHH
Confidence 89999988 578899976 78999999998 799999999999999999999999999999999999987 48999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHH
Q 001646 481 LTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (1038)
Q Consensus 481 LAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~ 522 (1038)
++++|.++++| ++.+.+|+++|++.+ ++|+++.+.++|.
T Consensus 367 la~~I~~ll~~---~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 367 LVSSLSKFIDN---EEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHhC---HHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 99999999999 999999999999999 6799999998875
No 59
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.94 E-value=8.9e-26 Score=247.42 Aligned_cols=346 Identities=15% Similarity=0.141 Sum_probs=244.2
Q ss_pred eEEEEcCCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch-hhhhhcCceEEEcccc---------------hhH
Q 001646 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH-EVWRNIGVPVAILQTG---------------REK 207 (1038)
Q Consensus 146 rIaiV~~~L--~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~-~~~e~~gI~v~~l~~~---------------rkl 207 (1038)
++++|.+.+ ..||.+.++..+.+.|.++||.|.+++...++.. -.+...|.+++.+++. .-+
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pll 81 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLL 81 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCccc
Confidence 466776655 5799999999999999999999999998765522 1122233444443321 112
Q ss_pred HHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc
Q 001646 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (1038)
Q Consensus 208 ~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~ 287 (1038)
...+...+..+||-|++......-.++..+..|.++|+|-|. ++.. ....+...+.++...-....++-.+...+..
T Consensus 82 r~i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHS--lfGf-ad~~si~~n~ll~~sL~~id~~IcVshtske 158 (426)
T KOG1111|consen 82 RPILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHS--LFGF-ADIGSILTNKLLPLSLANIDRIICVSHTSKE 158 (426)
T ss_pred chhhhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccc--cccc-cchhhhhhcceeeeeecCCCcEEEEeecCCC
Confidence 333444688999988887743344455445778999999996 2211 0000000011111111111111122223333
Q ss_pred cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCC-EEEEEEecccccccccccHHHHHHHHHHchhh
Q 001646 288 LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDD-LVIAIVGTQFMYRGLWLEHALILRALLPLFSE 366 (1038)
Q Consensus 288 l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~-~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k 366 (1038)
..++...++.+++.+||+ .++...|.+.++. .+..+ ..|+.++ |+.++ ||.|++++++..+.++
T Consensus 159 ntvlr~~L~p~kvsvIPn-Av~~~~f~P~~~~----------~~S~~i~~ivv~s-RLvyr---KGiDll~~iIp~vc~~ 223 (426)
T KOG1111|consen 159 NTVLRGALAPAKVSVIPN-AVVTHTFTPDAAD----------KPSADIITIVVAS-RLVYR---KGIDLLLEIIPSVCDK 223 (426)
T ss_pred ceEEEeccCHhHeeeccc-eeeccccccCccc----------cCCCCeeEEEEEe-eeeec---cchHHHHHHHHHHHhc
Confidence 556666788899999996 6666555543332 23334 5666666 88898 8999999999999999
Q ss_pred cccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHH
Q 001646 367 VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (1038)
Q Consensus 367 ~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLL 443 (1038)
+|+ ++|+|+| ||.. ..+++..+++.+.+ +|.++|.+ +++.+.|.+-|||+.||..| .|+++++
T Consensus 224 ~p~-------vrfii~GDGPk~----i~lee~lEk~~l~~-rV~~lG~v~h~~Vr~vl~~G~IFlntSlTE--afc~~iv 289 (426)
T KOG1111|consen 224 HPE-------VRFIIIGDGPKR----IDLEEMLEKLFLQD-RVVMLGTVPHDRVRDVLVRGDIFLNTSLTE--AFCMVIV 289 (426)
T ss_pred CCC-------eeEEEecCCccc----chHHHHHHHhhccC-ceEEecccchHHHHHHHhcCcEEeccHHHH--HHHHHHH
Confidence 999 9999999 9998 77888899999999 99999977 89999999999999999999 5999999
Q ss_pred HHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHH
Q 001646 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (1038)
Q Consensus 444 EAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~ 522 (1038)
|||+||+|||+|.+||++|++.++ -......+++++++++.+.+.. -. ..-...-+.+ +.|+|+..+++-+
T Consensus 290 EAaScGL~VVsTrVGGIpeVLP~d--~i~~~~~~~~dl~~~v~~ai~~---~~---~~p~~~h~~v~~~y~w~dVa~rTe 361 (426)
T KOG1111|consen 290 EAASCGLPVVSTRVGGIPEVLPED--MITLGEPGPDDLVGAVEKAITK---LR---TLPLEFHDRVKKMYSWKDVAERTE 361 (426)
T ss_pred HHHhCCCEEEEeecCCccccCCcc--ceeccCCChHHHHHHHHHHHHH---hc---cCchhHHHHHHHhccHHHHHHHHH
Confidence 999999999999999999999874 2334445789999999998875 11 1122334555 4499999999999
Q ss_pred HHHHHhhcC
Q 001646 523 MLLENVLKL 531 (1038)
Q Consensus 523 ~Lye~vLk~ 531 (1038)
++|.++.+-
T Consensus 362 kvy~r~~~t 370 (426)
T KOG1111|consen 362 KVYDRAATT 370 (426)
T ss_pred HHHHHHhhc
Confidence 999998764
No 60
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.93 E-value=3.5e-24 Score=254.19 Aligned_cols=338 Identities=11% Similarity=0.103 Sum_probs=229.8
Q ss_pred CceEEEEcCCC--CCChHHHHHHHHHHHHHHc-CCeEEEEEcCCCcc----------------------hhhh-hhcCce
Q 001646 144 KPQLALVFPDL--LIDPQQLQMVTIAIALREI-GYAIQVYSLEDGRA----------------------HEVW-RNIGVP 197 (1038)
Q Consensus 144 ~prIaiV~~~L--~iGGae~~v~~LAkaL~k~-G~eV~V~t~~~g~~----------------------~~~~-e~~gI~ 197 (1038)
+..+++|++.- ...|..+--+--|-+|.+. +++|+++.+.-.+. +... +..|.+
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 57788888754 2456555555556677776 78999987643110 0000 122222
Q ss_pred ----EEEcc-----------cchhHHHHhhhcCCcEEEEcCCchhHHH--HHHHhCCCCCCCEEEEEeCchhHHhHHHhh
Q 001646 198 ----VAILQ-----------TGREKASFVNWLNYDGILVNSLEAKVVI--SNIMQEPFKSLPLVWTIHEGTLATRARNYA 260 (1038)
Q Consensus 198 ----v~~l~-----------~~rkl~~lI~~~kpDIVhvhs~~~~~~l--a~La~~~~~gIPvI~tiHg~~L~~~lek~~ 260 (1038)
+...+ .-..+...+..++|||||++++...+.. +..++.++ + |+|.++|.+-.. .+..+.
T Consensus 402 ~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl-~-PVVasyHTny~e-Yl~~y~ 478 (794)
T PLN02501 402 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF-N-HVVGVVHTNYLE-YIKREK 478 (794)
T ss_pred CCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHc-C-CeEEEEeCCcHH-HHhHhc
Confidence 11111 1134556677899999999999886666 44444433 4 899999973322 222222
Q ss_pred hhchhH----HHHHHHHHHHhcceEeccCCccccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEE
Q 001646 261 SSGQLE----LLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLV 336 (1038)
Q Consensus 261 ~~~~d~----lIs~~~~~~~~a~~vvfps~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~v 336 (1038)
...... .+..+-..+. |+.++.|+...... ....+..+ .|||...|.+ ..+...+.+++.......
T Consensus 479 ~g~L~~~llk~l~~~v~r~h-cD~VIaPS~atq~L----~~~vI~nV--nGVDte~F~P---~~r~~~~r~lgi~~~~kg 548 (794)
T PLN02501 479 NGALQAFFVKHINNWVTRAY-CHKVLRLSAATQDL----PKSVICNV--HGVNPKFLKI---GEKVAEERELGQQAFSKG 548 (794)
T ss_pred chhHHHHHHHHHHHHHHHhh-CCEEEcCCHHHHHh----cccceeec--ccccccccCC---cchhHHHHhcCCccccCc
Confidence 111111 1111211111 78888877544321 22223323 3888854443 222222345666554556
Q ss_pred EEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChh
Q 001646 337 IAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEG 415 (1038)
Q Consensus 337 IL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~e 415 (1038)
++++| |+.++ ||++.||+|+..+.++.++ ++|+|+| |+.. +.+++++.++++ .|.|+|..+
T Consensus 549 iLfVG-RLa~E---KGld~LLeAla~L~~~~pn-------vrLvIVGDGP~r----eeLe~la~eLgL---~V~FLG~~d 610 (794)
T PLN02501 549 AYFLG-KMVWA---KGYRELIDLLAKHKNELDG-------FNLDVFGNGEDA----HEVQRAAKRLDL---NLNFLKGRD 610 (794)
T ss_pred eEEEE-ccccc---CCHHHHHHHHHHHHhhCCC-------eEEEEEcCCccH----HHHHHHHHHcCC---EEEecCCCC
Confidence 89999 88888 9999999999999877777 9999999 9886 788999998876 389999998
Q ss_pred hHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCc
Q 001646 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKIS 495 (1038)
Q Consensus 416 dV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~ 495 (1038)
++.++|+.+||||+||..| |||++++||||||+|||+++.+|. +.+.++.+|+++ +|+++++++|.+++++ +
T Consensus 611 d~~~lyasaDVFVlPS~sE--gFGlVlLEAMA~GlPVVATd~pG~-e~V~~g~nGll~--~D~EafAeAI~~LLsd---~ 682 (794)
T PLN02501 611 HADDSLHGYKVFINPSISD--VLCTATAEALAMGKFVVCADHPSN-EFFRSFPNCLTY--KTSEDFVAKVKEALAN---E 682 (794)
T ss_pred CHHHHHHhCCEEEECCCcc--cchHHHHHHHHcCCCEEEecCCCC-ceEeecCCeEec--CCHHHHHHHHHHHHhC---c
Confidence 8999999999999999998 799999999999999999999985 447778888875 6899999999999999 6
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 001646 496 PFARNIASIGRRSVKNLMALETIEGYAMLL 525 (1038)
Q Consensus 496 elr~~mg~~are~ak~Fs~e~ia~~Y~~Ly 525 (1038)
.....++. ...++|+.+++++.+.-
T Consensus 683 ~~rl~~~a-----~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 683 PQPLTPEQ-----RYNLSWEAATQRFMEYS 707 (794)
T ss_pred hhhhHHHH-----HhhCCHHHHHHHHHHhh
Confidence 64433322 34799999999987654
No 61
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.93 E-value=2.7e-24 Score=242.06 Aligned_cols=318 Identities=14% Similarity=0.104 Sum_probs=204.3
Q ss_pred eEEEEcCCCC-CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEE--------------cccchhHHHH
Q 001646 146 QLALVFPDLL-IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAI--------------LQTGREKASF 210 (1038)
Q Consensus 146 rIaiV~~~L~-iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~--------------l~~~rkl~~l 210 (1038)
||+++++... .||+|+++.++++.|.+. +|.......+..........+.... ..........
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDA--DIFTLVDDPDKLPRLLRLKKIRTSFIQKLPFARRRYRKYLPLMPLAIEQ 78 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCC--CEEEEeecCCccchhhcCCceeechhhhchhhHhhHhhhCchhhHHHHh
Confidence 5788888775 899999999999999753 2322222221111111100011000 0111112223
Q ss_pred hhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHh------HHHhhh------hchhHHHH-HHHHHHHh
Q 001646 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR------ARNYAS------SGQLELLN-DWKKVFNR 277 (1038)
Q Consensus 211 I~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~------lek~~~------~~~d~lIs-~~~~~~~~ 277 (1038)
+...+||+|++++.... . .+. ...++|.++++|...-..+ ...... ......+. .....+..
T Consensus 79 ~~~~~~D~v~~~~~~~~--~-~~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (351)
T cd03804 79 FDLSGYDLVISSSHAVA--K-GVI--TRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSAAR 153 (351)
T ss_pred ccccCCCEEEEcCcHHh--c-ccc--CCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHhcC
Confidence 44568999998775331 1 111 3456888999996211101 000000 00011111 12234567
Q ss_pred cceEeccCCcc-ccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHH
Q 001646 278 ATVVVFPDYVL-PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALI 356 (1038)
Q Consensus 278 a~~vvfps~~l-~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlL 356 (1038)
++.+++.+... ..+..... .+..+|++ |+|...+... +..+.+++++| ++.+. ||++.+
T Consensus 154 ~d~ii~~S~~~~~~~~~~~~-~~~~vi~~-~~d~~~~~~~--------------~~~~~~il~~G-~~~~~---K~~~~l 213 (351)
T cd03804 154 VDYFIANSRFVARRIKKYYG-RDATVIYP-PVDTDRFTPA--------------EEKEDYYLSVG-RLVPY---KRIDLA 213 (351)
T ss_pred CCEEEECCHHHHHHHHHHhC-CCcEEECC-CCCHhhcCcC--------------CCCCCEEEEEE-cCccc---cChHHH
Confidence 77777766552 12222222 24567774 6766332211 12344789999 77776 899999
Q ss_pred HHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccC
Q 001646 357 LRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL 433 (1038)
Q Consensus 357 LeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~ 433 (1038)
++|+..+. ++|+|+| |+.. +.+++ +..+ +|.|+|++ +++.++|+.||++|+||.
T Consensus 214 i~a~~~~~------------~~l~ivG~g~~~----~~l~~-----~~~~-~V~~~g~~~~~~~~~~~~~ad~~v~ps~- 270 (351)
T cd03804 214 IEAFNKLG------------KRLVVIGDGPEL----DRLRA-----KAGP-NVTFLGRVSDEELRDLYARARAFLFPAE- 270 (351)
T ss_pred HHHHHHCC------------CcEEEEECChhH----HHHHh-----hcCC-CEEEecCCCHHHHHHHHHhCCEEEECCc-
Confidence 99998764 4899999 6553 44443 4455 79999988 559999999999999998
Q ss_pred CcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhC
Q 001646 434 EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLM 513 (1038)
Q Consensus 434 EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs 513 (1038)
| |||++++||||||+|||+++.||..|++.++.+|++++++|+++++++|..++++ ++ .+++++++.+++|+
T Consensus 271 e--~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~---~~---~~~~~~~~~~~~~~ 342 (351)
T cd03804 271 E--DFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKN---ED---FDPQAIRAHAERFS 342 (351)
T ss_pred C--CCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC---cc---cCHHHHHHHHHhcC
Confidence 7 7999999999999999999999999999999999999999999999999999999 64 33445556667788
Q ss_pred HHHHHHHH
Q 001646 514 ALETIEGY 521 (1038)
Q Consensus 514 ~e~ia~~Y 521 (1038)
+++..+++
T Consensus 343 ~~~~~~~~ 350 (351)
T cd03804 343 ESRFREKI 350 (351)
T ss_pred HHHHHHHh
Confidence 88887764
No 62
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.93 E-value=1e-24 Score=247.10 Aligned_cols=271 Identities=16% Similarity=0.182 Sum_probs=199.4
Q ss_pred cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc-ccccc
Q 001646 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-LPMMY 292 (1038)
Q Consensus 214 ~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~-l~viy 292 (1038)
.++|+++++....... .+. ......+.+.++|+........ ...................++.+++++.. ...+.
T Consensus 98 ~~~diii~~~~~~~~~--~~~-~~~~~~~~i~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l~ 173 (372)
T cd04949 98 TKPDVFILDRPTLDGQ--ALL-NMKKAAKVVVVLHSNHVSDNND-PVHSLINNFYEYVFENLDKVDGVIVATEQQKQDLQ 173 (372)
T ss_pred CCCCEEEECCccccch--hHH-hccCCceEEEEEChHHhCCccc-ccccccchhhHHHHhChhhCCEEEEccHHHHHHHH
Confidence 6899999998776322 122 1233456888999632211100 00000000011111123455566555444 22222
Q ss_pred ccCC-CCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCC
Q 001646 293 SAFD-AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVEN 371 (1038)
Q Consensus 293 n~vd-~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~ 371 (1038)
..+. ..++.+||+ |++...+.... ....++..++++| ++.++ |+++.+++|+..+.++.|+
T Consensus 174 ~~~~~~~~v~~ip~-g~~~~~~~~~~-----------~~~~~~~~i~~vg-rl~~~---K~~~~li~a~~~l~~~~~~-- 235 (372)
T cd04949 174 KQFGNYNPIYTIPV-GSIDPLKLPAQ-----------FKQRKPHKIITVA-RLAPE---KQLDQLIKAFAKVVKQVPD-- 235 (372)
T ss_pred HHhCCCCceEEEcc-cccChhhcccc-----------hhhcCCCeEEEEE-ccCcc---cCHHHHHHHHHHHHHhCCC--
Confidence 2222 234788884 66652221110 1223456899999 77777 9999999999999998888
Q ss_pred CCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCC
Q 001646 372 ESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK 450 (1038)
Q Consensus 372 ~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~Gk 450 (1038)
++|+|+| |+.. ..++.+++++++.+ +|.+.|+.+++.++|+.||++|+||..| |||++++|||++|+
T Consensus 236 -----~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~S~~E--g~~~~~lEAma~G~ 303 (372)
T cd04949 236 -----ATLDIYGYGDEE----EKLKELIEELGLED-YVFLKGYTRDLDEVYQKAQLSLLTSQSE--GFGLSLMEALSHGL 303 (372)
T ss_pred -----cEEEEEEeCchH----HHHHHHHHHcCCcc-eEEEcCCCCCHHHHHhhhhEEEeccccc--ccChHHHHHHhCCC
Confidence 9999999 7665 67788888999998 9999998899999999999999999988 79999999999999
Q ss_pred CEEEcCCc-ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHH
Q 001646 451 PIIAPDLS-NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGY 521 (1038)
Q Consensus 451 PVIaTdvg-Gi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y 521 (1038)
|||+++++ |..+++.++.+|++++++|+++|+++|..++++ ++.+++|++++++.+++|++++++++|
T Consensus 304 PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 304 PVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLND---PKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred CEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 99999987 899999999999999999999999999999999 999999999999999999999998764
No 63
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.92 E-value=4.3e-23 Score=233.79 Aligned_cols=322 Identities=13% Similarity=0.091 Sum_probs=219.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccc--------------------
Q 001646 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG-------------------- 204 (1038)
Q Consensus 145 prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~-------------------- 204 (1038)
+||.++.++ .||.+..+.++++.|.+.||+|++++...+......+..++++..++..
T Consensus 2 ~~i~i~~~g--~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (357)
T PRK00726 2 KKILLAGGG--TGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKG 79 (357)
T ss_pred cEEEEEcCc--chHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHH
Confidence 456666554 4799999999999999999999999886533222333356666555421
Q ss_pred -hhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEec
Q 001646 205 -REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVF 283 (1038)
Q Consensus 205 -rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvf 283 (1038)
.++.++++..+||+||+|+... .+.+.++. +..++|+|++.|.. ......+. .+..++.++.
T Consensus 80 ~~~~~~~ik~~~pDvv~~~~~~~-~~~~~~~~-~~~~~p~v~~~~~~-~~~~~~r~--------------~~~~~d~ii~ 142 (357)
T PRK00726 80 VLQARKILKRFKPDVVVGFGGYV-SGPGGLAA-RLLGIPLVIHEQNA-VPGLANKL--------------LARFAKKVAT 142 (357)
T ss_pred HHHHHHHHHhcCCCEEEECCCcc-hhHHHHHH-HHcCCCEEEEcCCC-CccHHHHH--------------HHHHhchheE
Confidence 1123346667899999998655 24444443 35678999876641 11111111 1222333222
Q ss_pred cCCccccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHH-HHHHHHHH
Q 001646 284 PDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHA-LILRALLP 362 (1038)
Q Consensus 284 ps~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgld-lLLeAl~~ 362 (1038)
..... ... .+..++.++++ |++...+.. . ..+++++++++.++|+++|+.... +++. ++++|+.+
T Consensus 143 ~~~~~--~~~-~~~~~i~vi~n-~v~~~~~~~---~---~~~~~~~~~~~~~~i~~~gg~~~~----~~~~~~l~~a~~~ 208 (357)
T PRK00726 143 AFPGA--FPE-FFKPKAVVTGN-PVREEILAL---A---APPARLAGREGKPTLLVVGGSQGA----RVLNEAVPEALAL 208 (357)
T ss_pred Cchhh--hhc-cCCCCEEEECC-CCChHhhcc---c---chhhhccCCCCCeEEEEECCcHhH----HHHHHHHHHHHHH
Confidence 21111 111 45678899985 777633221 1 123355666777888888854433 5554 44488888
Q ss_pred chhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHH
Q 001646 363 LFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEI 441 (1038)
Q Consensus 363 L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlv 441 (1038)
+.+. + ..++++| |+. +.+.+..+ +++. |.+.|+.+++.++|+.||++|.+| | +.+
T Consensus 209 ~~~~-~--------~~~~~~G~g~~-----~~~~~~~~-~~~~---v~~~g~~~~~~~~~~~~d~~i~~~-----g-~~~ 264 (357)
T PRK00726 209 LPEA-L--------QVIHQTGKGDL-----EEVRAAYA-AGIN---AEVVPFIDDMAAAYAAADLVICRA-----G-AST 264 (357)
T ss_pred hhhC-c--------EEEEEcCCCcH-----HHHHHHhh-cCCc---EEEeehHhhHHHHHHhCCEEEECC-----C-HHH
Confidence 7543 2 3577888 543 34444444 5553 999999999999999999999866 2 689
Q ss_pred HHHHHHcCCCEEEcCCccc--------ccccccCccEEEEcCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 001646 442 LVKALCFRKPIIAPDLSNI--------RKYVDDRVNGYLFPKEN--IKALTHIILQVITNGKISPFARNIASIGRRSVKN 511 (1038)
Q Consensus 442 LLEAMA~GkPVIaTdvgGi--------~EiV~dG~nGlLv~~~D--~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~ 511 (1038)
++|||++|+|||+++.++. .+.+.++.+|+++++.| +++|+++|.++++| ++.+++|++++++.+++
T Consensus 265 ~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~ 341 (357)
T PRK00726 265 VAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD---PERLEAMAEAARALGKP 341 (357)
T ss_pred HHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcCCc
Confidence 9999999999999876532 35676677899999887 99999999999999 99999999999999999
Q ss_pred hCHHHHHHHHHHHHH
Q 001646 512 LMALETIEGYAMLLE 526 (1038)
Q Consensus 512 Fs~e~ia~~Y~~Lye 526 (1038)
+..+.+++.+.+++.
T Consensus 342 ~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 342 DAAERLADLIEELAR 356 (357)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887754
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=99.91 E-value=6.8e-23 Score=232.01 Aligned_cols=288 Identities=14% Similarity=0.134 Sum_probs=189.4
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCC
Q 001646 163 MVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLP 242 (1038)
Q Consensus 163 v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIP 242 (1038)
-.-+.+.|..+|.+|+|+-...-. ...+.- .+...+.|+.... ...+-. .+..++|
T Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 71 (331)
T PHA01630 16 KKLLEEHLKMLGHKVTVFEKPTLT---------------------KYQLPP-GYPIYIYYTIFNS-MLFWKG-IPHVGKN 71 (331)
T ss_pred HHHHHHHHHHhCCeeEEEeccchh---------------------hhhcCC-CCceeeehhhhhH-HHHHhh-ccccCCc
Confidence 344567889999999988643210 001111 3334445554442 222211 2345789
Q ss_pred EEEEEeCch-hHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccc--cccccCC-CCCEEEcCCCCCCccccccccc
Q 001646 243 LVWTIHEGT-LATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP--MMYSAFD-AGNYYVIPGSPAKAWEADTNMD 318 (1038)
Q Consensus 243 vI~tiHg~~-L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~--viyn~vd-~~ki~VIPgsgVD~~~f~~~~~ 318 (1038)
+++++|+.. +...+..+. ....++.+++++.... +...+++ .+++.+||+ |+|...|.....
T Consensus 72 ~v~e~~~~~~l~~~~~~~~-------------~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpN-GVd~~~f~~~~~ 137 (331)
T PHA01630 72 IVFEVADTDAISHTALYFF-------------RNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPH-NLNPRMFEYKPK 137 (331)
T ss_pred eEEEEEeechhhHHHHHHH-------------hhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECC-CCCHHHcCCCcc
Confidence 999999621 111111111 0234555555554421 1122333 357889995 888744322111
Q ss_pred hhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHH
Q 001646 319 LYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAI 397 (1038)
Q Consensus 319 ~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeL 397 (1038)
...+.+++ ++|+++.++ ||++.+++|++.+.++.++ ++++|+| |... ..+
T Consensus 138 -----------~~~~~~vl-~~~g~~~~~---Kg~d~Li~A~~~l~~~~~~-------~~llivG~~~~~----~~l--- 188 (331)
T PHA01630 138 -----------EKPHPCVL-AILPHSWDR---KGGDIVVKIFHELQNEGYD-------FYFLIKSSNMLD----PRL--- 188 (331)
T ss_pred -----------ccCCCEEE-EEecccccc---CCHHHHHHHHHHHHhhCCC-------EEEEEEeCcccc----hhh---
Confidence 01234444 445488777 9999999999999887777 9999999 4432 111
Q ss_pred HHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcC--
Q 001646 398 AHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK-- 475 (1038)
Q Consensus 398 a~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~-- 475 (1038)
.++.. +......+++..+|+.||++|+||..| |||++++||||||+|||+|+.||++|++.++.||++++.
T Consensus 189 ---~~~~~--~~~~v~~~~l~~~y~~aDv~v~pS~~E--~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~ 261 (331)
T PHA01630 189 ---FGLNG--VKTPLPDDDIYSLFAGCDILFYPVRGG--AFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGR 261 (331)
T ss_pred ---ccccc--eeccCCHHHHHHHHHhCCEEEECCccc--cCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecc
Confidence 13332 222223489999999999999999998 799999999999999999999999999999999888763
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCCc--HHHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 001646 476 -----------------ENIKALTHIILQVITNGKIS--PFAR-NIASIGRRSVKNLMALETIEGYAMLLEN 527 (1038)
Q Consensus 476 -----------------~D~eaLAeAI~~LLsDg~l~--elr~-~mg~~are~ak~Fs~e~ia~~Y~~Lye~ 527 (1038)
.|.+++++++.+++.+ + +..+ .++.+++..+++|+|++++++|.++|++
T Consensus 262 ~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~---~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 262 KPKLWYTNPIHVGYFLDPDIEDAYQKLLEALAN---WTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cccccccCCcccccccCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3788899999999987 5 4444 4555555666889999999999999975
No 65
>PLN02275 transferase, transferring glycosyl groups
Probab=99.91 E-value=6.9e-23 Score=234.69 Aligned_cols=308 Identities=13% Similarity=0.078 Sum_probs=197.0
Q ss_pred CChHHHHHHHHHHHHHHcC-CeEEEEEcCCCc-chhhhhhcCceEEEcccchh-------------HHH-----------
Q 001646 156 IDPQQLQMVTIAIALREIG-YAIQVYSLEDGR-AHEVWRNIGVPVAILQTGRE-------------KAS----------- 209 (1038)
Q Consensus 156 iGGae~~v~~LAkaL~k~G-~eV~V~t~~~g~-~~~~~e~~gI~v~~l~~~rk-------------l~~----------- 209 (1038)
-.|.+..+..++..|.+.| ++|+|++..... ........+++++.++.... +..
T Consensus 14 ~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (371)
T PLN02275 14 DFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLLWF 93 (371)
T ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4556667777778887776 589999986533 22333444566666641100 111
Q ss_pred -HhhhcCCcEEEEcCCchhH--HHHHHHhCCCCCCCEEEEEeCchhHH-hHHHhhhhchhHHHHH-HHHHHHhcceEecc
Q 001646 210 -FVNWLNYDGILVNSLEAKV--VISNIMQEPFKSLPLVWTIHEGTLAT-RARNYASSGQLELLND-WKKVFNRATVVVFP 284 (1038)
Q Consensus 210 -lI~~~kpDIVhvhs~~~~~--~la~La~~~~~gIPvI~tiHg~~L~~-~lek~~~~~~d~lIs~-~~~~~~~a~~vvfp 284 (1038)
.++..+||+||+|++.... ..+.++. +..++|+|+++|+..... ............+... .+..++.++.+++.
T Consensus 94 ~~~~~~~~DvV~~~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~ 172 (371)
T PLN02275 94 LCVKIPRPDVFLVQNPPSVPTLAVVKLAC-WLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLCV 172 (371)
T ss_pred HHhhCCCCCEEEEeCCCCcHHHHHHHHHH-HHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEEC
Confidence 1234799999999765421 2333332 345689999999732110 0000000111112222 23366778888777
Q ss_pred CCccc-cccc--cCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHH
Q 001646 285 DYVLP-MMYS--AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALL 361 (1038)
Q Consensus 285 s~~l~-viyn--~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~ 361 (1038)
+.... .+.. +++ +.+|+| ++ ...+.+... . .... .++..+++++| ++.++ ||++.+++|+.
T Consensus 173 S~~~~~~l~~~~g~~---i~vi~n-~~-~~~f~~~~~--~----~~~~-~~~~~~i~~~g-rl~~~---k~~~~li~a~~ 236 (371)
T PLN02275 173 TKAMQHELDQNWGIR---ATVLYD-QP-PEFFRPASL--E----IRLR-PNRPALVVSST-SWTPD---EDFGILLEAAV 236 (371)
T ss_pred CHHHHHHHHHhcCCC---eEEECC-CC-HHHcCcCCc--h----hccc-CCCcEEEEEeC-ceecc---CCHHHHHHHHH
Confidence 66522 1111 232 778886 32 222222111 1 1111 22345677888 87777 99999999998
Q ss_pred HchhhcccCC----------CCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEcc-Ch--hhHHHHHHhcCEE
Q 001646 362 PLFSEVSVEN----------ESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE--GDVDSVLNTADVV 427 (1038)
Q Consensus 362 ~L~~k~p~~~----------~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG-~~--edV~~lLaaADIf 427 (1038)
.+.......+ ...++++|+|+| |+.. +.++++++++++++ |.|.+ +. +++..+|++||++
T Consensus 237 ~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~----~~l~~~~~~~~l~~--v~~~~~~~~~~~~~~~l~~aDv~ 310 (371)
T PLN02275 237 MYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQK----AMYEEKISRLNLRH--VAFRTMWLEAEDYPLLLGSADLG 310 (371)
T ss_pred HHHhhhhhccccccccccccccCCCeEEEEEeCCCCH----HHHHHHHHHcCCCc--eEEEcCCCCHHHHHHHHHhCCEE
Confidence 8753211000 012349999999 8876 88999999999987 66654 43 8999999999999
Q ss_pred EEcc--cCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 001646 428 IYGS--FLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (1038)
Q Consensus 428 VlPS--~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LL 489 (1038)
|+|+ ...+ |||++++||||||+|||+++.||.+|+|.++.+|++++ |+++|+++|.+++
T Consensus 311 v~~~~s~~~e-~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 311 VSLHTSSSGL-DLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred EEeccccccc-cccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--CHHHHHHHHHHhC
Confidence 9864 2222 79999999999999999999999999999999999997 6999999998864
No 66
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.91 E-value=2e-22 Score=226.60 Aligned_cols=312 Identities=14% Similarity=0.144 Sum_probs=213.4
Q ss_pred cCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccc---------------------hhHHH
Q 001646 151 FPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG---------------------REKAS 209 (1038)
Q Consensus 151 ~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~---------------------rkl~~ 209 (1038)
+...+.||....+..+++.|.++||+|+|++...+.........++++..++.. ..+.+
T Consensus 4 ~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (350)
T cd03785 4 IAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQARK 83 (350)
T ss_pred EEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 334456899999999999999999999999876543322233334555444321 12334
Q ss_pred HhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccc
Q 001646 210 FVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP 289 (1038)
Q Consensus 210 lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~ 289 (1038)
+++..+||+||+|+... +..+.++. +..++|++++.|+.. .... .+..+..++.+++++....
T Consensus 84 ~i~~~~pDvI~~~~~~~-~~~~~~~a-~~~~~p~v~~~~~~~-~~~~--------------~~~~~~~~~~vi~~s~~~~ 146 (350)
T cd03785 84 ILKKFKPDVVVGFGGYV-SGPVGLAA-KLLGIPLVIHEQNAV-PGLA--------------NRLLARFADRVALSFPETA 146 (350)
T ss_pred HHHhcCCCEEEECCCCc-chHHHHHH-HHhCCCEEEEcCCCC-ccHH--------------HHHHHHhhCEEEEcchhhh
Confidence 46668999999998655 23333332 355789887655311 1000 1112334555555433321
Q ss_pred cccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHH-HHHHHHHHchhhcc
Q 001646 290 MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHA-LILRALLPLFSEVS 368 (1038)
Q Consensus 290 viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgld-lLLeAl~~L~~k~p 368 (1038)
-. +...++.++++ |++...+.. . . .++++++++++++++++|+.... |+.. ++++|+..+.+ +
T Consensus 147 ~~---~~~~~~~~i~n-~v~~~~~~~---~--~-~~~~~~~~~~~~~i~~~~g~~~~----~~~~~~l~~a~~~l~~--~ 210 (350)
T cd03785 147 KY---FPKDKAVVTGN-PVREEILAL---D--R-ERARLGLRPGKPTLLVFGGSQGA----RAINEAVPEALAELLR--K 210 (350)
T ss_pred hc---CCCCcEEEECC-CCchHHhhh---h--h-hHHhcCCCCCCeEEEEECCcHhH----HHHHHHHHHHHHHhhc--c
Confidence 11 44577888874 777632221 1 1 16677888888888888855544 5554 55688887763 2
Q ss_pred cCCCCCCCEEEE-EEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHH
Q 001646 369 VENESNSPIKVM-ILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKAL 446 (1038)
Q Consensus 369 ~~~~~~~~vkLV-IVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAM 446 (1038)
+ ++++ ++| | .. +.+++.++++ .+ +|.+.|+.+++.++|+.||++|.+| | +++++|||
T Consensus 211 ~-------~~~~~i~G~g-~~----~~l~~~~~~~--~~-~v~~~g~~~~~~~~l~~ad~~v~~s-----g-~~t~~Eam 269 (350)
T cd03785 211 R-------LQVIHQTGKG-DL----EEVKKAYEEL--GV-NYEVFPFIDDMAAAYAAADLVISRA-----G-ASTVAELA 269 (350)
T ss_pred C-------eEEEEEcCCc-cH----HHHHHHHhcc--CC-CeEEeehhhhHHHHHHhcCEEEECC-----C-HhHHHHHH
Confidence 3 5544 556 4 22 6677777765 34 7999999999999999999999866 2 68999999
Q ss_pred HcCCCEEEcCCcc--------cccccccCccEEEEcCC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHH
Q 001646 447 CFRKPIIAPDLSN--------IRKYVDDRVNGYLFPKE--NIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALE 516 (1038)
Q Consensus 447 A~GkPVIaTdvgG--------i~EiV~dG~nGlLv~~~--D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ 516 (1038)
++|+|||+++.++ ..+.+.++.+|+++++. |+++++++|..++++ ++.+++|+.++++.++.+..++
T Consensus 270 ~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~ 346 (350)
T cd03785 270 ALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSD---PERLKAMAEAARSLARPDAAER 346 (350)
T ss_pred HhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999988654 24566667789999987 899999999999999 8999999999999988777777
Q ss_pred HHH
Q 001646 517 TIE 519 (1038)
Q Consensus 517 ia~ 519 (1038)
+++
T Consensus 347 i~~ 349 (350)
T cd03785 347 IAD 349 (350)
T ss_pred HHh
Confidence 664
No 67
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.89 E-value=1.2e-21 Score=227.88 Aligned_cols=338 Identities=13% Similarity=0.120 Sum_probs=218.6
Q ss_pred ChHHHHHHHHHHHHHHcCCeEEE--EEcCCCcchhh--hhhcCceEEEccc--chhHHHHhhhcCCcEEEEcCCchhHHH
Q 001646 157 DPQQLQMVTIAIALREIGYAIQV--YSLEDGRAHEV--WRNIGVPVAILQT--GREKASFVNWLNYDGILVNSLEAKVVI 230 (1038)
Q Consensus 157 GGae~~v~~LAkaL~k~G~eV~V--~t~~~g~~~~~--~e~~gI~v~~l~~--~rkl~~lI~~~kpDIVhvhs~~~~~~l 230 (1038)
.|-...+..+++.|.+.++++.| .+......... ....++.+..++. ...+..+++..+||+||++.....+.+
T Consensus 60 ~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~~~~~~ 139 (425)
T PRK05749 60 VGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETELWPNL 139 (425)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecchhHHH
Confidence 45778899999999998765444 32222111111 1111344444443 345677788899999998855432222
Q ss_pred HHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc--ccccccCCCCCEEEcCCCCC
Q 001646 231 SNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMMYSAFDAGNYYVIPGSPA 308 (1038)
Q Consensus 231 a~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l--~viyn~vd~~ki~VIPgsgV 308 (1038)
...+ ...++|++.+.|..... ....+. .+-...+..+..++.++..+... .....+++.+ +.+++|...
T Consensus 140 l~~~--~~~~ip~vl~~~~~~~~-s~~~~~-----~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~g~~~~-i~vi~n~~~ 210 (425)
T PRK05749 140 IAEL--KRRGIPLVLANARLSER-SFKRYQ-----KFKRFYRLLFKNIDLVLAQSEEDAERFLALGAKNE-VTVTGNLKF 210 (425)
T ss_pred HHHH--HHCCCCEEEEeccCChh-hHHHHH-----HHHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCCC-cEecccccc
Confidence 2222 35678988765421111 011111 11122334566677776666552 2223345555 778876444
Q ss_pred CccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCC
Q 001646 309 KAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDST 387 (1038)
Q Consensus 309 D~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~ 387 (1038)
|.... .........++..++ +++++++++| .. . |+.+.+++|+..+.+++|+ ++|+|+| |+..
T Consensus 211 d~~~~-~~~~~~~~~~r~~~~--~~~~vil~~~-~~-~----~~~~~ll~A~~~l~~~~~~-------~~liivG~g~~r 274 (425)
T PRK05749 211 DIEVP-PELAARAATLRRQLA--PNRPVWIAAS-TH-E----GEEELVLDAHRALLKQFPN-------LLLILVPRHPER 274 (425)
T ss_pred cCCCC-hhhHHHHHHHHHHhc--CCCcEEEEeC-CC-c----hHHHHHHHHHHHHHHhCCC-------cEEEEcCCChhh
Confidence 44211 111112345677776 4556777766 42 3 6788999999999887887 9999999 7653
Q ss_pred CchHHHHHHHHHHcCCCC------------ceEEEccChhhHHHHHHhcCEEEE-cccCCcCCcCHHHHHHHHcCCCEEE
Q 001646 388 SNYSVVIEAIAHNLHYPL------------GVVKHMAAEGDVDSVLNTADVVIY-GSFLEEQTFPEILVKALCFRKPIIA 454 (1038)
Q Consensus 388 e~Y~~~LeeLa~qLgL~d------------~~V~flG~~edV~~lLaaADIfVl-PS~~EeqGFPlvLLEAMA~GkPVIa 454 (1038)
.+.++++++++|+.. ..|.+.+...++..+|+.||++++ +|..| ++|.+++||||||+|||+
T Consensus 275 ---~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e--~~g~~~lEAma~G~PVI~ 349 (425)
T PRK05749 275 ---FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVK--RGGHNPLEPAAFGVPVIS 349 (425)
T ss_pred ---HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCC--CCCCCHHHHHHhCCCEEE
Confidence 257888888888852 135555556799999999999655 66666 689999999999999999
Q ss_pred cCC-cccccccccC-ccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 001646 455 PDL-SNIRKYVDDR-VNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVL 529 (1038)
Q Consensus 455 Tdv-gGi~EiV~dG-~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vL 529 (1038)
++. ++..|+++.. .+|++++++|+++|+++|..+++| ++.+++|+++|++.+++. ...++++.++++..+
T Consensus 350 g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~---~~~~~~m~~~a~~~~~~~--~~~~~~~~~~l~~~l 421 (425)
T PRK05749 350 GPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTD---PDARQAYGEAGVAFLKQN--QGALQRTLQLLEPYL 421 (425)
T ss_pred CCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHhc
Confidence 764 5556655442 368888889999999999999999 999999999999999553 255566666666543
No 68
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.89 E-value=1.3e-21 Score=219.87 Aligned_cols=314 Identities=14% Similarity=0.165 Sum_probs=205.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccc---------------------
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------------------- 204 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~--------------------- 204 (1038)
+|.++.++. ||.......+++.|.++||+|++++...+......+..++++..++..
T Consensus 2 ~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 79 (348)
T TIGR01133 2 KVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAV 79 (348)
T ss_pred eEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHH
Confidence 566666654 566667789999999999999999864432222223356665544321
Q ss_pred hhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEecc
Q 001646 205 REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFP 284 (1038)
Q Consensus 205 rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfp 284 (1038)
..+.++++..+||+||+|.... ...+.++. +..++|+|++.++. ...+.. +..+..++.++..
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~-~~~~~~~~-~~~~~p~v~~~~~~-~~~~~~--------------~~~~~~~d~ii~~ 142 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYV-SGPAGLAA-KLLGIPLFHHEQNA-VPGLTN--------------KLLSRFAKKVLIS 142 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCcc-cHHHHHHH-HHcCCCEEEECCCC-CccHHH--------------HHHHHHhCeeEEC
Confidence 1234456778999999997655 23444332 34567887544321 110111 1123344544443
Q ss_pred CCccccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHH-HHHHHHHHc
Q 001646 285 DYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHA-LILRALLPL 363 (1038)
Q Consensus 285 s~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgld-lLLeAl~~L 363 (1038)
+....- .+ +..+|+ +|++...+... . .+..++++++.++|+++|+... . |++. .+++|+..+
T Consensus 143 ~~~~~~---~~---~~~~i~-n~v~~~~~~~~--~----~~~~~~~~~~~~~i~~~gg~~~-~---~~~~~~l~~a~~~l 205 (348)
T TIGR01133 143 FPGAKD---HF---EAVLVG-NPVRQEIRSLP--V----PRERFGLREGKPTILVLGGSQG-A---KILNELVPKALAKL 205 (348)
T ss_pred chhHhh---cC---CceEEc-CCcCHHHhccc--c----hhhhcCCCCCCeEEEEECCchh-H---HHHHHHHHHHHHHH
Confidence 222110 01 225666 47765222111 1 1335678888889999984433 3 6654 456888877
Q ss_pred hhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHH
Q 001646 364 FSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (1038)
Q Consensus 364 ~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLL 443 (1038)
.+.. +++++++|... .+.+++.++++++.+ .|.|. .. ++.++|++||++|.+| | |.+++
T Consensus 206 ~~~~---------~~~~~~~g~~~---~~~l~~~~~~~~l~~-~v~~~-~~-~~~~~l~~ad~~v~~~-----g-~~~l~ 264 (348)
T TIGR01133 206 AEKG---------IQIVHQTGKND---LEKVKNVYQELGIEA-IVTFI-DE-NMAAAYAAADLVISRA-----G-ASTVA 264 (348)
T ss_pred hhcC---------cEEEEECCcch---HHHHHHHHhhCCceE-EecCc-cc-CHHHHHHhCCEEEECC-----C-hhHHH
Confidence 6532 45545444332 167788888888866 66666 33 8999999999999864 3 78999
Q ss_pred HHHHcCCCEEEcCCcc-------cccccccCccEEEEcCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCH
Q 001646 444 KALCFRKPIIAPDLSN-------IRKYVDDRVNGYLFPKEN--IKALTHIILQVITNGKISPFARNIASIGRRSVKNLMA 514 (1038)
Q Consensus 444 EAMA~GkPVIaTdvgG-------i~EiV~dG~nGlLv~~~D--~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~ 514 (1038)
|||++|+|||+++.++ ..+++.++.+|++++++| +++|+++|.++++| ++.+++|+++++++++....
T Consensus 265 Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~ 341 (348)
T TIGR01133 265 ELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD---PANLEAMAEAARKLAKPDAA 341 (348)
T ss_pred HHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcCCccHH
Confidence 9999999999998765 235788888999999876 99999999999999 99999999999988877776
Q ss_pred HHHHH
Q 001646 515 LETIE 519 (1038)
Q Consensus 515 e~ia~ 519 (1038)
+++++
T Consensus 342 ~~i~~ 346 (348)
T TIGR01133 342 KRIAE 346 (348)
T ss_pred HHHHh
Confidence 66654
No 69
>PHA01633 putative glycosyl transferase group 1
Probab=99.88 E-value=3.2e-21 Score=217.88 Aligned_cols=301 Identities=12% Similarity=0.068 Sum_probs=195.4
Q ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEE--cCCchhHHHH
Q 001646 154 LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV--NSLEAKVVIS 231 (1038)
Q Consensus 154 L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhv--hs~~~~~~la 231 (1038)
+..+....+...++..|++.|--|++++..- . ++...++ +|++ |-+.....+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~----------~~~~~~~~~~~~~~~~ 62 (335)
T PHA01633 8 MNYSSISNVSEDIAEVLRENGEIVTITKNPF---Y------------IPKAEKL----------IVFIPFHPPSLNPYLY 62 (335)
T ss_pred echhhhhhHHHHHHHHHHhCCcEEEEecCCc---c------------cCccceE----------EEEeecCCcccchHHh
Confidence 4567778889999999999998888876431 0 0000000 1111 1111111111
Q ss_pred HHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccccccccCCCCCEEEcCCCCCCcc
Q 001646 232 NIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAW 311 (1038)
Q Consensus 232 ~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~viyn~vd~~ki~VIPgsgVD~~ 311 (1038)
..- ....+.|++.|+|+-.-.....+...+.. .+++.++..... ....+++.. + +|++ |+|..
T Consensus 63 ~~~-~~~~~~~~~tt~~g~~~~~~y~~~m~~~~-~vIavS~~t~~~------------L~~~G~~~~-i-~I~~-GVD~~ 125 (335)
T PHA01633 63 AYY-QFKGKKYFYTTCDGIPNIEIVNKYLLQDV-KFIPNSKFSAEN------------LQEVGLQVD-L-PVFH-GINFK 125 (335)
T ss_pred hhh-hhcCCCceEEeeCCcCchHHHHHHHhcCC-EEEeCCHHHHHH------------HHHhCCCCc-e-eeeC-CCChh
Confidence 111 11334688999997322222233332222 223322222111 111233322 3 3443 78875
Q ss_pred ccccccchhhHHHHHhhCCC-CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCch
Q 001646 312 EADTNMDLYNDTVRVKMGFK-PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNY 390 (1038)
Q Consensus 312 ~f~~~~~~~k~~lReklgi~-~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y 390 (1038)
.|.+.. ......+++++.. ++.++++++| |+.++ ||++.+++|+..+.+++|+ ...+++++++|+
T Consensus 126 ~f~p~~-~~~~~~r~~~~~~~~~~~~i~~vG-Rl~~~---KG~~~LI~A~~~L~~~~p~---~~~~i~l~ivG~------ 191 (335)
T PHA01633 126 IVENAE-KLVPQLKQKLDKDFPDTIKFGIVS-GLTKR---KNMDLMLQVFNELNTKYPD---IAKKIHFFVISH------ 191 (335)
T ss_pred hcCccc-hhhHHHHHHhCcCCCCCeEEEEEe-CCccc---cCHHHHHHHHHHHHHhCCC---ccccEEEEEEcH------
Confidence 443321 1123456666643 4677899999 77887 9999999999999887764 112367887773
Q ss_pred HHHHHHHHHHcCCCCceEEEcc---C--hhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccc
Q 001646 391 SVVIEAIAHNLHYPLGVVKHMA---A--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVD 465 (1038)
Q Consensus 391 ~~~LeeLa~qLgL~d~~V~flG---~--~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~ 465 (1038)
.. .+++++++ +|.|+| . .+++.++|++||++|+||..| |||++++||||||+|||+++++|++|++.
T Consensus 192 -~~----~~~l~l~~-~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~E--gfGlvlLEAMA~G~PVVas~~~~l~Ei~g 263 (335)
T PHA01633 192 -KQ----FTQLEVPA-NVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTE--GFGMPVLESMAMGTPVIHQLMPPLDEFTS 263 (335)
T ss_pred -HH----HHHcCCCC-cEEEEecCCCCCHHHHHHHHHhCCEEEECCccc--cCCHHHHHHHHcCCCEEEccCCCceeecC
Confidence 11 34567877 899995 3 378999999999999999998 79999999999999999999999999754
Q ss_pred c------------------CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 001646 466 D------------------RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (1038)
Q Consensus 466 d------------------G~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~ 522 (1038)
+ ...|++++..|+++++++|.++++. .+ ....+.++++.++.|+|+++.++|.
T Consensus 264 ~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~---~~-~~~~~~~~~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 264 WQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFEL---QD-REERSMKLKELAKKYDIRNLYTRFL 334 (335)
T ss_pred CccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhc---cC-hhhhhHHHHHHHHhcCHHHHHHHhh
Confidence 2 2247788889999999999999776 33 3344778889999999999999885
No 70
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.88 E-value=1e-21 Score=199.04 Aligned_cols=167 Identities=20% Similarity=0.354 Sum_probs=149.2
Q ss_pred hHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhh-cccCCCCCCCEEEEEEe-CCCCCchHHHHHHHH
Q 001646 321 NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE-VSVENESNSPIKVMILS-GDSTSNYSVVIEAIA 398 (1038)
Q Consensus 321 k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k-~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa 398 (1038)
++..+.+.+.+.++++|+++| ++.+. ||++.+++|+..+.++ .++ ++|+|+| +.. ...++..+
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g-~~~~~---K~~~~li~a~~~l~~~~~~~-------~~l~i~G~~~~----~~~~~~~~ 66 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIG-RLDPE---KGIDLLIEAFKKLKEKKNPN-------YKLVIVGDGEY----KKELKNLI 66 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEES-ESSGG---GTHHHHHHHHHHHHHHHHTT-------EEEEEESHCCH----HHHHHHHH
T ss_pred hHHHHHHcCCCCCCeEEEEEe-cCccc---cCHHHHHHHHHHHHhhcCCC-------eEEEEEccccc----cccccccc
Confidence 456788888999999999999 77777 9999999999999875 666 9999999 544 37889999
Q ss_pred HHcCCCCceEEEccChh--hHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCC
Q 001646 399 HNLHYPLGVVKHMAAEG--DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKE 476 (1038)
Q Consensus 399 ~qLgL~d~~V~flG~~e--dV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~ 476 (1038)
+.+++.+ +|.++|... ++..+|+.||++|+||..| |||.+++|||+||+|||+++.|+..|++.++.+|+++++.
T Consensus 67 ~~~~~~~-~i~~~~~~~~~~l~~~~~~~di~v~~s~~e--~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~ 143 (172)
T PF00534_consen 67 EKLNLKE-NIIFLGYVPDDELDELYKSSDIFVSPSRNE--GFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPN 143 (172)
T ss_dssp HHTTCGT-TEEEEESHSHHHHHHHHHHTSEEEE-BSSB--SS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTT
T ss_pred ccccccc-cccccccccccccccccccceecccccccc--ccccccccccccccceeeccccCCceeeccccceEEeCCC
Confidence 9999988 899999885 9999999999999999998 7999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001646 477 NIKALTHIILQVITNGKISPFARNIASIGRRS 508 (1038)
Q Consensus 477 D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ 508 (1038)
|+++++++|.+++++ ++.++.|+++|+++
T Consensus 144 ~~~~l~~~i~~~l~~---~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 144 DIEELADAIEKLLND---PELRQKLGKNARER 172 (172)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC---HHHHHHHHHHhcCC
Confidence 999999999999999 99999999999874
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.87 E-value=1.5e-21 Score=230.19 Aligned_cols=289 Identities=9% Similarity=0.026 Sum_probs=197.1
Q ss_pred CCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeC----chhHHh-------HHHhhhhchhHH---HHH-HHHHHHhcc
Q 001646 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE----GTLATR-------ARNYASSGQLEL---LND-WKKVFNRAT 279 (1038)
Q Consensus 215 kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg----~~L~~~-------lek~~~~~~d~l---Is~-~~~~~~~a~ 279 (1038)
..|+|++|.+... .+..++.++..+.|+++..|- ..+..- +..... ++.+ ... .+..+..++
T Consensus 131 ~~d~iwihDyhl~-llp~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~--~D~igF~t~~~~~~Fl~~~~ 207 (460)
T cd03788 131 PGDLVWVHDYHLL-LLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPWREELLRGLLG--ADLIGFQTERYARNFLSCCS 207 (460)
T ss_pred CCCEEEEeChhhh-HHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCChHHHHHHHhc--CCEEEECCHHHHHHHHHHHH
Confidence 5799999999873 666666555667899999995 111110 111100 1110 001 111222232
Q ss_pred eEeccCCcc--ccccccCCCCCEEEcCCCCCCccccccccchh--hHHHHHhhCCCCCCEEEEEEecccccccccccHHH
Q 001646 280 VVVFPDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY--NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL 355 (1038)
Q Consensus 280 ~vvfps~~l--~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~--k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldl 355 (1038)
.+.-++... .+.+.+ ...++.++| .|+|...|....... +...++..+..+++++|+++| |+.+. ||++.
T Consensus 208 ~~l~~~~~~~~~i~~~g-~~~~i~vip-~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vg-Rl~~~---Kgi~~ 281 (460)
T cd03788 208 RLLGLEVTDDGGVEYGG-RRVRVGAFP-IGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVD-RLDYS---KGIPE 281 (460)
T ss_pred HHcCCcccCCceEEECC-EEEEEEEEe-CeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEec-Ccccc---CCHHH
Confidence 222221111 111111 124577888 489886655432221 333444456667888999999 88888 89999
Q ss_pred HHHHHHHchhhcccCCCCCCCEEEEEEeCCC------CCchHHHHHHHHHHcCC-------CCceEEEccC--hhhHHHH
Q 001646 356 ILRALLPLFSEVSVENESNSPIKVMILSGDS------TSNYSVVIEAIAHNLHY-------PLGVVKHMAA--EGDVDSV 420 (1038)
Q Consensus 356 LLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~------~e~Y~~~LeeLa~qLgL-------~d~~V~flG~--~edV~~l 420 (1038)
+++|+..+.+++|+ ...+++|+++|++. ...+.+.+++++.+++. .+ .+.+.|. .+++..+
T Consensus 282 ll~A~~~ll~~~p~---~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~-v~~~~g~v~~~el~~~ 357 (460)
T cd03788 282 RLLAFERLLERYPE---WRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTP-VRYLYRSLPREELAAL 357 (460)
T ss_pred HHHHHHHHHHhChh---hcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCcee-EEEEeCCCCHHHHHHH
Confidence 99999999888775 12247899898332 12355666666665433 23 3344564 4899999
Q ss_pred HHhcCEEEEcccCCcCCcCHHHHHHHHcCCC----EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCc-
Q 001646 421 LNTADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKIS- 495 (1038)
Q Consensus 421 LaaADIfVlPS~~EeqGFPlvLLEAMA~GkP----VIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~- 495 (1038)
|+.||++|+||..| |||++++||||||+| ||+|+.+|..+. +.+|+++++.|++++|++|.+++++ +
T Consensus 358 y~~aDv~v~pS~~E--g~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~---~~ 429 (460)
T cd03788 358 YRAADVALVTPLRD--GMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTM---PL 429 (460)
T ss_pred HHhccEEEeCcccc--ccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcC---CH
Confidence 99999999999998 899999999999999 999999998887 4579999999999999999999997 5
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 001646 496 PFARNIASIGRRSVKNLMALETIEGYAML 524 (1038)
Q Consensus 496 elr~~mg~~are~ak~Fs~e~ia~~Y~~L 524 (1038)
++++.++.++++.+++|+++..++.|..-
T Consensus 430 ~e~~~~~~~~~~~v~~~~~~~w~~~~l~~ 458 (460)
T cd03788 430 EERRERHRKLREYVRTHDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 56678899999999999999999998754
No 72
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.87 E-value=3.7e-20 Score=212.06 Aligned_cols=333 Identities=9% Similarity=0.066 Sum_probs=216.9
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc----hh---------------hhhh-c--CceEEE
Q 001646 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA----HE---------------VWRN-I--GVPVAI 200 (1038)
Q Consensus 143 R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~----~~---------------~~e~-~--gI~v~~ 200 (1038)
+.+||+++..+. .+|....+..++++|+++|++|.+++...... .. .+.. + .-....
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYD 81 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccc
Confidence 567899998876 45888999999999999999866665432110 00 0000 0 000000
Q ss_pred cc--------cchhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHH
Q 001646 201 LQ--------TGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWK 272 (1038)
Q Consensus 201 l~--------~~rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~ 272 (1038)
.. ....+.++++..+||+||++++.. .+..+......++|++..+++.... ...
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip~~~~~td~~~~---~~~------------- 143 (380)
T PRK13609 82 KKIFSWYANFGRKRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIPTYNVLTDFCLH---KIW------------- 143 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCCeEEEeCCCCCC---ccc-------------
Confidence 00 013455667778999999987665 2333333345578987655431111 001
Q ss_pred HHHHhcceEeccCCc--cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEeccccccccc
Q 001646 273 KVFNRATVVVFPDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLW 350 (1038)
Q Consensus 273 ~~~~~a~~vvfps~~--l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGi 350 (1038)
.+..++.+..++.. ..+...+++.+++.++. .|++.. +. ....+..++.++++++++++++++|++....
T Consensus 144 -~~~~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G-~p~~~~-f~--~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~--- 215 (380)
T PRK13609 144 -VHREVDRYFVATDHVKKVLVDIGVPPEQVVETG-IPIRSS-FE--LKINPDIIYNKYQLCPNKKILLIMAGAHGVL--- 215 (380)
T ss_pred -ccCCCCEEEECCHHHHHHHHHcCCChhHEEEEC-cccChH-Hc--CcCCHHHHHHHcCCCCCCcEEEEEcCCCCCC---
Confidence 12234444444333 11222345566777653 354431 11 1112345788899988776666666566655
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEc
Q 001646 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYG 430 (1038)
Q Consensus 351 KgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlP 430 (1038)
|++..+++++... ++ ++++++||... ...+.+++++++++ + +|+++|+.+++.++|+.||++|.
T Consensus 216 k~~~~li~~l~~~----~~-------~~~viv~G~~~-~~~~~l~~~~~~~~--~-~v~~~g~~~~~~~l~~~aD~~v~- 279 (380)
T PRK13609 216 GNVKELCQSLMSV----PD-------LQVVVVCGKNE-ALKQSLEDLQETNP--D-ALKVFGYVENIDELFRVTSCMIT- 279 (380)
T ss_pred cCHHHHHHHHhhC----CC-------cEEEEEeCCCH-HHHHHHHHHHhcCC--C-cEEEEechhhHHHHHHhccEEEe-
Confidence 7887788877532 44 88888875321 23467777776554 4 69999999999999999999984
Q ss_pred ccCCcCCcCHHHHHHHHcCCCEEEcC-Ccccc----cccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 001646 431 SFLEEQTFPEILVKALCFRKPIIAPD-LSNIR----KYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIG 505 (1038)
Q Consensus 431 S~~EeqGFPlvLLEAMA~GkPVIaTd-vgGi~----EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~a 505 (1038)
+ +.|++++|||+||+|||+++ .+|.. +++.+ +|+.+...|+++++++|.++++| ++.+++|++++
T Consensus 280 ---~--~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~--~G~~~~~~~~~~l~~~i~~ll~~---~~~~~~m~~~~ 349 (380)
T PRK13609 280 ---K--PGGITLSEAAALGVPVILYKPVPGQEKENAMYFER--KGAAVVIRDDEEVFAKTEALLQD---DMKLLQMKEAM 349 (380)
T ss_pred ---C--CCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh--CCcEEEECCHHHHHHHHHHHHCC---HHHHHHHHHHH
Confidence 3 24899999999999999976 55532 23333 35555567999999999999999 99999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHh
Q 001646 506 RRSVKNLMALETIEGYAMLLENV 528 (1038)
Q Consensus 506 re~ak~Fs~e~ia~~Y~~Lye~v 528 (1038)
++.++.++++++++.+.++++..
T Consensus 350 ~~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 350 KSLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred HHhCCCchHHHHHHHHHHhhhhh
Confidence 99888899999999998887654
No 73
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.86 E-value=3e-20 Score=215.45 Aligned_cols=370 Identities=16% Similarity=0.164 Sum_probs=234.4
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHHHH---------cCCeEEEEEcCCCcc------hhhhhhcC----ceEEE--c
Q 001646 143 RKPQLALVFPDLLIDPQQLQMVTIAIALRE---------IGYAIQVYSLEDGRA------HEVWRNIG----VPVAI--L 201 (1038)
Q Consensus 143 R~prIaiV~~~L~iGGae~~v~~LAkaL~k---------~G~eV~V~t~~~g~~------~~~~e~~g----I~v~~--l 201 (1038)
-..+++++.+++.+||++......+-.+.. .|++|.+++...... ........ +.+.. +
T Consensus 33 ~~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~l 112 (495)
T KOG0853|consen 33 PFEHVTFIHPDLGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDWL 112 (495)
T ss_pred cchhheeeccccccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEeec
Confidence 346688999999999999999999999999 999999998754332 21112221 11111 0
Q ss_pred ccch------------------hHHHHhhh-cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCch--hHHh--HHH
Q 001646 202 QTGR------------------EKASFVNW-LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT--LATR--ARN 258 (1038)
Q Consensus 202 ~~~r------------------kl~~lI~~-~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~--L~~~--lek 258 (1038)
+... .+....++ .++|.|++........+...+..+...+.+.|.+|... ++.. +.+
T Consensus 113 P~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~~~~~~p~~~~~i~~~~h~~~~lla~r~g~~~ 192 (495)
T KOG0853|consen 113 PRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLLKQLSGPDVIIKIYFYCHFPDSLLAKRLGVLK 192 (495)
T ss_pred CcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHHHHhcCCcccceeEEeccchHHHhccccCccc
Confidence 0000 00111222 46788888777554444444433222456788888711 1111 000
Q ss_pred hhhhchhHHHHHHH-HHHHhcceEeccCCcc-cccc---ccCCCCCE-EEcCCCCCCcccccc--c-cc-hhhHHHHHhh
Q 001646 259 YASSGQLELLNDWK-KVFNRATVVVFPDYVL-PMMY---SAFDAGNY-YVIPGSPAKAWEADT--N-MD-LYNDTVRVKM 328 (1038)
Q Consensus 259 ~~~~~~d~lIs~~~-~~~~~a~~vvfps~~l-~viy---n~vd~~ki-~VIPgsgVD~~~f~~--~-~~-~~k~~lRekl 328 (1038)
.... ..+...+ .....+..+...++.. ..+. -.++..++ ...| ++|...+.. + .. ..+...|...
T Consensus 193 ~l~~---~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~--ei~~s~~~~~~~~~~~~~~~~~r~~~ 267 (495)
T KOG0853|consen 193 VLYR---HALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYP--EIDGSWFTYGQYESHLELRLPVRLYR 267 (495)
T ss_pred eeeh---hhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceeec--cccchhccccccccchhcccccceee
Confidence 0000 0000000 0111111111111110 0000 01111112 2222 233211111 0 01 1133345566
Q ss_pred CCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe--CCC-----CCchHHHHHHHHHHc
Q 001646 329 GFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--GDS-----TSNYSVVIEAIAHNL 401 (1038)
Q Consensus 329 gi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG--G~~-----~e~Y~~~LeeLa~qL 401 (1038)
+....+.+...+. ++.+. |+++++++|+..+....++ ......+++++| |.. ...|.+.++.+++++
T Consensus 268 ~v~~~d~~~~siN-~~~pg---kd~~l~l~a~~~~~~~i~~--~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~ 341 (495)
T KOG0853|consen 268 GVSGIDRFFPSIN-RFEPG---KDQDLALPAFTLLHDSIPE--PSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEY 341 (495)
T ss_pred eecccceEeeeee-ecCCC---CCceeehhhHHhhhcccCC--CCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHh
Confidence 7777788888888 89998 9999999999999887753 334558999999 544 346888999999999
Q ss_pred CCCCceEEEccChhhHHHHHHhcC--EEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHH
Q 001646 402 HYPLGVVKHMAAEGDVDSVLNTAD--VVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIK 479 (1038)
Q Consensus 402 gL~d~~V~flG~~edV~~lLaaAD--IfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~e 479 (1038)
++....|.|+....+...+..+|| ++++....| .||++++|||+||+|||||+.||..|+|.++.+|+++++ +.+
T Consensus 342 ~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E--~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp-~~e 418 (495)
T KOG0853|consen 342 DLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANE--HFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDP-GQE 418 (495)
T ss_pred CccCceEEEecCCchHHHHHHHHhcceEEecCCCC--CccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCC-chH
Confidence 995438888887766666555554 444444447 499999999999999999999999999999999999999 566
Q ss_pred ---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHhh
Q 001646 480 ---ALTHIILQVITNGKISPFARNIASIGRRSVKN-LMALETIEGYAMLLENVL 529 (1038)
Q Consensus 480 ---aLAeAI~~LLsDg~l~elr~~mg~~are~ak~-Fs~e~ia~~Y~~Lye~vL 529 (1038)
.+|++|.++..| ++++.+|+++|++++++ |+|..+.++..+++...+
T Consensus 419 ~~~~~a~~~~kl~~~---p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 419 AVAELADALLKLRRD---PELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 699999999999 99999999999999955 999888888888777543
No 74
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.86 E-value=3.3e-20 Score=218.88 Aligned_cols=305 Identities=13% Similarity=0.103 Sum_probs=189.5
Q ss_pred cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHh-----------HHHhhh------hchhHHHHHHHHHHH
Q 001646 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR-----------ARNYAS------SGQLELLNDWKKVFN 276 (1038)
Q Consensus 214 ~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~-----------lek~~~------~~~d~lIs~~~~~~~ 276 (1038)
.++|++|+|.+... .....+......+|+|+|.|...+.+. +.++.. .......+.......
T Consensus 147 ~~~dViH~HeWm~g-~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~aa~ 225 (590)
T cd03793 147 EPAVVAHFHEWQAG-VGLPLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAAAH 225 (590)
T ss_pred CCCeEEEEcchhHh-HHHHHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHHHh
Confidence 57999999999983 444444435678999999997333221 111100 000111112333555
Q ss_pred hcceEeccCCccc-cccccCCCCCEEEcCCCCCCccccccccch--------------hhHHHHHhhCCCCCCEEEEE-E
Q 001646 277 RATVVVFPDYVLP-MMYSAFDAGNYYVIPGSPAKAWEADTNMDL--------------YNDTVRVKMGFKPDDLVIAI-V 340 (1038)
Q Consensus 277 ~a~~vvfps~~l~-viyn~vd~~ki~VIPgsgVD~~~f~~~~~~--------------~k~~lReklgi~~d~~vIL~-V 340 (1038)
.++.+...+.... -....++...-.|||| |+|...|...... .+..++..++++++++++++ +
T Consensus 226 ~Ad~fttVS~it~~E~~~Ll~~~pd~ViPN-Gid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~tli~f~~ 304 (590)
T cd03793 226 CAHVFTTVSEITAYEAEHLLKRKPDVVLPN-GLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDKTLYFFTA 304 (590)
T ss_pred hCCEEEECChHHHHHHHHHhCCCCCEEeCC-CcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCCeEEEEEe
Confidence 6666665554411 1111122211128885 8888666544311 02234566788888888877 6
Q ss_pred eccccc-ccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCC-C--------CCchHHHHHHH-------------
Q 001646 341 GTQFMY-RGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGD-S--------TSNYSVVIEAI------------- 397 (1038)
Q Consensus 341 Gsrl~~-~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~-~--------~e~Y~~~LeeL------------- 397 (1038)
| |+++ + ||++.+|+|+++|......++....-+-|+|+=+. . .+...+.+++.
T Consensus 305 G-R~e~~n---KGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~ 380 (590)
T cd03793 305 G-RYEFSN---KGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLF 380 (590)
T ss_pred e-cccccc---CCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhh
Confidence 7 8877 8 99999999999987654331222223444444321 1 01111111111
Q ss_pred ------------------------------------------------------HHHcCCCC---ce--EEEcc-Ch---
Q 001646 398 ------------------------------------------------------AHNLHYPL---GV--VKHMA-AE--- 414 (1038)
Q Consensus 398 ------------------------------------------------------a~qLgL~d---~~--V~flG-~~--- 414 (1038)
+.++++.+ ++ |.|+. +.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~ 460 (590)
T cd03793 381 EAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSST 460 (590)
T ss_pred hHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCC
Confidence 11222322 12 44444 11
Q ss_pred -----hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccc----ccccccC-ccEEEEc-------CCC
Q 001646 415 -----GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDR-VNGYLFP-------KEN 477 (1038)
Q Consensus 415 -----edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi----~EiV~dG-~nGlLv~-------~~D 477 (1038)
.+..++|+.||++|+||++| |||++++||||||+|||+|+.+|. .|++.++ ..|+++. +.+
T Consensus 461 ~~~~g~~y~E~~~g~dl~v~PS~yE--~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~ 538 (590)
T cd03793 461 NPLLGLDYEEFVRGCHLGVFPSYYE--PWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDES 538 (590)
T ss_pred CCcCCcchHHHhhhceEEEeccccC--CCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHH
Confidence 34678999999999999998 799999999999999999999998 5655544 3566665 456
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHH--HHHHhhCHHHHHHHHHHHHHHhhc
Q 001646 478 IKALTHIILQVITNGKISPFARNIASIGR--RSVKNLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 478 ~eaLAeAI~~LLsDg~l~elr~~mg~~ar--e~ak~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
+++|+++|.++++. ..++++..+++ +.++.|+|+++++.|.+.++.+++
T Consensus 539 v~~La~~m~~~~~~----~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 539 VQQLTQYMYEFCQL----SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 88899999999854 56666666655 777889999999999999988764
No 75
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.84 E-value=2e-19 Score=211.84 Aligned_cols=288 Identities=9% Similarity=0.018 Sum_probs=189.2
Q ss_pred CCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCc----hhHHh-------HHHhhhhchhHH---HHHHHHHH-Hhcc
Q 001646 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATR-------ARNYASSGQLEL---LNDWKKVF-NRAT 279 (1038)
Q Consensus 215 kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~----~L~~~-------lek~~~~~~d~l---Is~~~~~~-~~a~ 279 (1038)
.-|+|.+|.... ..+..++.+.....++.+..|-. .+... ++..+.. +.+ ...+...| ..+.
T Consensus 127 ~~d~vwvhDYhl-~l~p~~lr~~~~~~~igfFlHipfP~~e~f~~lp~r~~il~gll~~--dligF~t~~~~~~Fl~~~~ 203 (456)
T TIGR02400 127 PGDIVWVHDYHL-MLLPAMLRELGVQNKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAY--DLVGFQTYDDARNFLSAVS 203 (456)
T ss_pred CCCEEEEecchh-hHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcC--CEEEECCHHHHHHHHHHHH
Confidence 458999999888 36777776666778899999961 11110 1111000 000 00011111 1111
Q ss_pred e-EeccCCccccccccCCCCCEEEcCCCCCCccccccccchh-----hHHHHHhhCCCCCCEEEEEEecccccccccccH
Q 001646 280 V-VVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEH 353 (1038)
Q Consensus 280 ~-vvfps~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~-----k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgl 353 (1038)
. .........+.+. -...++.++| +|+|...|....... ...+|+++ +++++|+++| |+.+. ||+
T Consensus 204 ~~l~~~~~~~~~~~~-g~~~~v~viP-~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~vIl~Vg-RLd~~---KGi 274 (456)
T TIGR02400 204 RELGLETLPNGVESG-GRTVRVGAFP-IGIDVDRFAEQAKKPSVQKRIAELRESL---KGRKLIIGVD-RLDYS---KGL 274 (456)
T ss_pred HHhCCcccCCceEEC-CcEEEEEEec-CcCCHHHHHHHhcChhHHHHHHHHHHHc---CCCeEEEEcc-ccccc---cCH
Confidence 0 0000000011111 1234577888 489986664432211 12355555 3667999999 88888 999
Q ss_pred HHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCC--CchHHHHHHHHHHc----CC-------CCceEEEccC--hhhHH
Q 001646 354 ALILRALLPLFSEVSVENESNSPIKVMILSGDST--SNYSVVIEAIAHNL----HY-------PLGVVKHMAA--EGDVD 418 (1038)
Q Consensus 354 dlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~--e~Y~~~LeeLa~qL----gL-------~d~~V~flG~--~edV~ 418 (1038)
+.+++|+..+.+++|+ ...++.|+++|++.. ......+++.++++ +- .. .+.+.|. .+++.
T Consensus 275 ~~ll~A~~~ll~~~p~---~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~p-v~~l~~~~~~~el~ 350 (456)
T TIGR02400 275 PERLLAFERFLEEHPE---WRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTP-IRYLNRSYDREELM 350 (456)
T ss_pred HHHHHHHHHHHHhCcc---ccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCcc-EEEEcCCCCHHHHH
Confidence 9999999999888875 223467888874431 12223344444332 11 12 2333443 38999
Q ss_pred HHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCC----EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCC
Q 001646 419 SVLNTADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKI 494 (1038)
Q Consensus 419 ~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkP----VIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l 494 (1038)
.+|++||++|+||..| |||++++||||||+| ||+|+.+|..+.+. +|+++++.|++++|++|.+++++.
T Consensus 351 aly~aaDv~vv~S~~E--G~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~~-- 423 (456)
T TIGR02400 351 ALYRAADVGLVTPLRD--GMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTMP-- 423 (456)
T ss_pred HHHHhCcEEEECcccc--ccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcCC--
Confidence 9999999999999998 899999999999999 99999999988874 699999999999999999999851
Q ss_pred cHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 001646 495 SPFARNIASIGRRSVKNLMALETIEGYAMLL 525 (1038)
Q Consensus 495 ~elr~~mg~~are~ak~Fs~e~ia~~Y~~Ly 525 (1038)
+++++++.+++++.+.+|++...++.|..-+
T Consensus 424 ~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 424 LEEREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 4666688888999998899999999988654
No 76
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=9.3e-19 Score=180.78 Aligned_cols=222 Identities=20% Similarity=0.193 Sum_probs=161.1
Q ss_pred EEEcCCCC--CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc
Q 001646 148 ALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (1038)
Q Consensus 148 aiV~~~L~--iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~ 225 (1038)
+++..... .||.+..+..+++.|.+.||+|+++. .....+...++..+||+||+|+..
T Consensus 2 ~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~--------------------~~~~~~~~~~~~~~~D~i~~~~~~ 61 (229)
T cd01635 2 LLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA--------------------LLLLLLLRILRGFKPDVVHAHGYY 61 (229)
T ss_pred eeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE--------------------echHHHHHHHhhcCCCEEEEcCCC
Confidence 34444443 78999999999999999999999998 122334455566799999999988
Q ss_pred hhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccccccccCCCCCEEEcCC
Q 001646 226 AKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPG 305 (1038)
Q Consensus 226 ~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~viyn~vd~~ki~VIPg 305 (1038)
...... ....+..++|++++.|+....... .. ... ........+
T Consensus 62 ~~~~~~-~~~~~~~~~~~i~~~h~~~~~~~~----~~-~~~---~~~~~~~~~--------------------------- 105 (229)
T cd01635 62 PAPLAL-LLAARLLGIPLVLTVHGVNRSLLE----GV-PLS---LLALSIGLA--------------------------- 105 (229)
T ss_pred cHHHHH-HHHHhhCCCCEEEEEcCccHhhcc----cC-cHH---HHHHHHhhc---------------------------
Confidence 743333 222346678999999963222100 00 000 000000000
Q ss_pred CCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-C
Q 001646 306 SPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-G 384 (1038)
Q Consensus 306 sgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G 384 (1038)
...++| ++.+. |+++.+++|+..+.++.++ ++++++| +
T Consensus 106 ------------------------------~~~~~g-~~~~~---k~~~~~~~a~~~l~~~~~~-------~~~~i~G~~ 144 (229)
T cd01635 106 ------------------------------DKVFVG-RLAPE---KGLDDLIEAFALLKERGPD-------LKLVIAGDG 144 (229)
T ss_pred ------------------------------ceEEEE-eeccc---CCHHHHHHHHHHHHHhCCC-------eEEEEEeCC
Confidence 111788 66676 8999999999999988777 9999999 5
Q ss_pred CCCCchHHHHHHHHHHcCCCCceEEEccCh---hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccc
Q 001646 385 DSTSNYSVVIEAIAHNLHYPLGVVKHMAAE---GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR 461 (1038)
Q Consensus 385 ~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~---edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~ 461 (1038)
... ...+..+.+++..+ +|.++|+. +++..+++.||++++||..| ++|.+++|||++|+|||+|+.++..
T Consensus 145 ~~~----~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e--~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 145 PER----EYLEELLAALLLLD-RVIFLGGLDPEELLALLLAAADVFVLPSLRE--GFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred CCh----HHHHHHHHhcCCcc-cEEEeCCCCcHHHHHHHhhcCCEEEeccccc--CcChHHHHHHhCCCCEEEcCCCCcc
Confidence 443 44445466777777 89999983 55666777799999999998 7999999999999999999999999
Q ss_pred cccccCccEEEE
Q 001646 462 KYVDDRVNGYLF 473 (1038)
Q Consensus 462 EiV~dG~nGlLv 473 (1038)
|++.++.+|+++
T Consensus 218 e~i~~~~~g~~~ 229 (229)
T cd01635 218 EIVEDGLTGLLV 229 (229)
T ss_pred eEEECCCceEEC
Confidence 999998899874
No 77
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=8.9e-18 Score=197.31 Aligned_cols=192 Identities=16% Similarity=0.216 Sum_probs=159.5
Q ss_pred hHHHHHhhCCCC--CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHH
Q 001646 321 NDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAI 397 (1038)
Q Consensus 321 k~~lReklgi~~--d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeL 397 (1038)
+..+++.+|++. +.+++.++| |+..+ ||++++++|+..+.++. ++++|+| | +..+...+..+
T Consensus 279 k~~L~~~~gL~~~~~~pl~~~vs-Rl~~Q---KG~dl~~~~i~~~l~~~---------~~~vilG~g--d~~le~~~~~l 343 (487)
T COG0297 279 KVALQERLGLDVDLPGPLFGFVS-RLTAQ---KGLDLLLEAIDELLEQG---------WQLVLLGTG--DPELEEALRAL 343 (487)
T ss_pred HHHHHHHhCCCCCCCCcEEEEee-ccccc---cchhHHHHHHHHHHHhC---------ceEEEEecC--cHHHHHHHHHH
Confidence 567788899883 558899998 77778 99999999999999875 7999999 7 45678899999
Q ss_pred HHHcCCCCceEEEccChhh-HHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccccc--------Cc
Q 001646 398 AHNLHYPLGVVKHMAAEGD-VDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--------RV 468 (1038)
Q Consensus 398 a~qLgL~d~~V~flG~~ed-V~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~d--------G~ 468 (1038)
++.+.. . .....|+.+. ...+|+.||++++||++| ++|++-++||+.|+++|+..+||.++.|.+ ..
T Consensus 344 a~~~~~-~-~~~~i~~~~~la~~i~agaD~~lmPSrfE--PcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~g 419 (487)
T COG0297 344 ASRHPG-R-VLVVIGYDEPLAHLIYAGADVILMPSRFE--PCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVG 419 (487)
T ss_pred HHhcCc-e-EEEEeeecHHHHHHHHhcCCEEEeCCcCc--CCcHHHHHHHHcCCcceEcccCCccceecCccchhccCce
Confidence 986655 2 4555666644 466899999999999999 599999999999999999999999999975 46
Q ss_pred cEEEEcCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCC
Q 001646 469 NGYLFPKENIKALTHIILQVITNGKISPF-ARNIASIGRRSVKNLMALETIEGYAMLLENVLKLPS 533 (1038)
Q Consensus 469 nGlLv~~~D~eaLAeAI~~LLsDg~l~el-r~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vLk~P~ 533 (1038)
+|+++.+.++++++.+|.+.+.-++.+.. ++.+..++.. ..|+|+..++.|.++|+.++..+-
T Consensus 420 tGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~~~~ 483 (487)
T COG0297 420 TGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEYVELYKPLLSKPF 483 (487)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHHHHHHHHHhcccc
Confidence 89999999999999999988764333555 6666655554 679999999999999999987654
No 78
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.81 E-value=2.4e-18 Score=199.00 Aligned_cols=335 Identities=10% Similarity=0.095 Sum_probs=212.7
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHHHHcCC---eEEEEEcCC--Cc-chh---------------hhhh-cCceEEEc
Q 001646 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGY---AIQVYSLED--GR-AHE---------------VWRN-IGVPVAIL 201 (1038)
Q Consensus 144 ~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~---eV~V~t~~~--g~-~~~---------------~~e~-~gI~v~~l 201 (1038)
.+||+|+..+. .+|.-..+..+.++|.+.|. +|.++-.-. .+ ... .|.. +...-..+
T Consensus 5 ~~~vlil~~~~-G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~~~ 83 (391)
T PRK13608 5 NKKILIITGSF-GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPDKL 83 (391)
T ss_pred CceEEEEECCC-CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCchhh
Confidence 35788888665 45677788889999998764 455443211 11 111 1100 00000000
Q ss_pred -------ccchhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHH
Q 001646 202 -------QTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKV 274 (1038)
Q Consensus 202 -------~~~rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~ 274 (1038)
....++.++++..+||+||++++.. .+..+......++|++...++.... ..+ .
T Consensus 84 ~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~--~~~~l~~~~~~~iP~~~v~td~~~~---~~w--------------~ 144 (391)
T PRK13608 84 DKCFYKYYGLNKLINLLIKEKPDLILLTFPTP--VMSVLTEQFNINIPVATVMTDYRLH---KNW--------------I 144 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCEEEECCcHH--HHHHHHHhcCCCCCEEEEeCCCCcc---ccc--------------c
Confidence 0113455667788999999986654 3443433345578986544431111 001 1
Q ss_pred HHhcceEeccCCc--cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEeccccccccccc
Q 001646 275 FNRATVVVFPDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLE 352 (1038)
Q Consensus 275 ~~~a~~vvfps~~--l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKg 352 (1038)
...++.+++++.. ..+...+++.+++.++. .|++.. |. ....+...+.+++++++++++++.|+++... |+
T Consensus 145 ~~~~d~~~v~s~~~~~~l~~~gi~~~ki~v~G-iPv~~~-f~--~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~---k~ 217 (391)
T PRK13608 145 TPYSTRYYVATKETKQDFIDVGIDPSTVKVTG-IPIDNK-FE--TPIDQKQWLIDNNLDPDKQTILMSAGAFGVS---KG 217 (391)
T ss_pred cCCCCEEEECCHHHHHHHHHcCCCHHHEEEEC-eecChH-hc--ccccHHHHHHHcCCCCCCCEEEEECCCcccc---hh
Confidence 2334444444333 12223456667777753 466531 11 1122456677889988777666655577655 78
Q ss_pred HHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEccc
Q 001646 353 HALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSF 432 (1038)
Q Consensus 353 ldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~ 432 (1038)
++.+++++. +..++ +++++++|... +..+++.+.++..+ +|.++|+.+++.++|++||++|..+
T Consensus 218 ~~~li~~~~---~~~~~-------~~~vvv~G~~~----~l~~~l~~~~~~~~-~v~~~G~~~~~~~~~~~aDl~I~k~- 281 (391)
T PRK13608 218 FDTMITDIL---AKSAN-------AQVVMICGKSK----ELKRSLTAKFKSNE-NVLILGYTKHMNEWMASSQLMITKP- 281 (391)
T ss_pred HHHHHHHHH---hcCCC-------ceEEEEcCCCH----HHHHHHHHHhccCC-CeEEEeccchHHHHHHhhhEEEeCC-
Confidence 888898863 22344 78877765432 22344444445555 7999999999999999999999632
Q ss_pred CCcCCcCHHHHHHHHcCCCEEEcC-Cccc----ccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001646 433 LEEQTFPEILVKALCFRKPIIAPD-LSNI----RKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRR 507 (1038)
Q Consensus 433 ~EeqGFPlvLLEAMA~GkPVIaTd-vgGi----~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are 507 (1038)
.|+++.|||++|+|+|+++ .+|. ..++.+...|++ ..|+++++++|.++++| ++.+++|++++++
T Consensus 282 -----gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~--~~~~~~l~~~i~~ll~~---~~~~~~m~~~~~~ 351 (391)
T PRK13608 282 -----GGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI--ADTPEEAIKIVASLTNG---NEQLTNMISTMEQ 351 (391)
T ss_pred -----chHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE--eCCHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence 4889999999999999985 4431 223345445555 45899999999999999 9999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHhhcC
Q 001646 508 SVKNLMALETIEGYAMLLENVLKL 531 (1038)
Q Consensus 508 ~ak~Fs~e~ia~~Y~~Lye~vLk~ 531 (1038)
.++.++++.+++.+.++++.+.+.
T Consensus 352 ~~~~~s~~~i~~~l~~l~~~~~~~ 375 (391)
T PRK13608 352 DKIKYATQTICRDLLDLIGHSSQP 375 (391)
T ss_pred hcCCCCHHHHHHHHHHHhhhhhhh
Confidence 998899999999999998876543
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.80 E-value=2.9e-18 Score=197.40 Aligned_cols=272 Identities=16% Similarity=0.125 Sum_probs=176.4
Q ss_pred hHHHHhhhcCCcEEEEcCCchhH----HHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceE
Q 001646 206 EKASFVNWLNYDGILVNSLEAKV----VISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVV 281 (1038)
Q Consensus 206 kl~~lI~~~kpDIVhvhs~~~~~----~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~v 281 (1038)
++.++++..+||+||++++.... .+..+......++|++.++++.... ...+ ....++.+
T Consensus 91 ~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~--~~~w--------------~~~~~d~~ 154 (382)
T PLN02605 91 EVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTC--HPTW--------------FHKGVTRC 154 (382)
T ss_pred HHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCc--Cccc--------------ccCCCCEE
Confidence 34456777899999998765321 1222211123568888776642100 0011 12334444
Q ss_pred eccCCc--cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHH
Q 001646 282 VFPDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRA 359 (1038)
Q Consensus 282 vfps~~--l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeA 359 (1038)
.+++.. ..+...+++.+++.+++ .|++...... ...+..+|+++|++++.++|+++|+.. |.|++..++++
T Consensus 155 ~~~s~~~~~~l~~~g~~~~ki~v~g-~~v~~~f~~~--~~~~~~~r~~~gl~~~~~~il~~Gg~~----g~~~~~~li~~ 227 (382)
T PLN02605 155 FCPSEEVAKRALKRGLEPSQIRVYG-LPIRPSFARA--VRPKDELRRELGMDEDLPAVLLMGGGE----GMGPLEETARA 227 (382)
T ss_pred EECCHHHHHHHHHcCCCHHHEEEEC-cccCHhhccC--CCCHHHHHHHcCCCCCCcEEEEECCCc----ccccHHHHHHH
Confidence 444433 12233456677888875 5776521111 123567899999999999999999432 34888888999
Q ss_pred HHHchh----hcccCCCCCCCEE-EEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCC
Q 001646 360 LLPLFS----EVSVENESNSPIK-VMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLE 434 (1038)
Q Consensus 360 l~~L~~----k~p~~~~~~~~vk-LVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~E 434 (1038)
+..+.. ..++ ++ ++++| ... .+.+.+++. .... +|+++|+.+++.++|++||++|.++
T Consensus 228 l~~~~~~~~~~~~~-------~~~~vi~G-~~~-~~~~~L~~~----~~~~-~v~~~G~~~~~~~l~~aaDv~V~~~--- 290 (382)
T PLN02605 228 LGDSLYDKNLGKPI-------GQVVVICG-RNK-KLQSKLESR----DWKI-PVKVRGFVTNMEEWMGACDCIITKA--- 290 (382)
T ss_pred HHHhhccccccCCC-------ceEEEEEC-CCH-HHHHHHHhh----cccC-CeEEEeccccHHHHHHhCCEEEECC---
Confidence 876531 1222 55 45555 221 122333332 2234 6999999999999999999999865
Q ss_pred cCCcCHHHHHHHHcCCCEEEcCC------cccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001646 435 EQTFPEILVKALCFRKPIIAPDL------SNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRS 508 (1038)
Q Consensus 435 eqGFPlvLLEAMA~GkPVIaTdv------gGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ 508 (1038)
.|++++|||+||+|||+++. ++. +.+.++..|+++ .|+++++++|.+++++. ++.+++|++++++.
T Consensus 291 ---g~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~~~g~g~~~--~~~~~la~~i~~ll~~~--~~~~~~m~~~~~~~ 362 (382)
T PLN02605 291 ---GPGTIAEALIRGLPIILNGYIPGQEEGNV-PYVVDNGFGAFS--ESPKEIARIVAEWFGDK--SDELEAMSENALKL 362 (382)
T ss_pred ---CcchHHHHHHcCCCEEEecCCCccchhhH-HHHHhCCceeec--CCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence 37899999999999999984 344 344444456654 79999999999999751 56777899999999
Q ss_pred HHhhCHHHHHHHHHHHH
Q 001646 509 VKNLMALETIEGYAMLL 525 (1038)
Q Consensus 509 ak~Fs~e~ia~~Y~~Ly 525 (1038)
+...+.+.+++...++.
T Consensus 363 ~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 363 ARPEAVFDIVHDLHELV 379 (382)
T ss_pred cCCchHHHHHHHHHHHh
Confidence 98888888887766543
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.79 E-value=4.1e-18 Score=212.22 Aligned_cols=296 Identities=10% Similarity=0.109 Sum_probs=196.4
Q ss_pred CCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCc----hhHHh-------HHHhhhhchhH-HHHHH-HHHHHhcceE
Q 001646 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATR-------ARNYASSGQLE-LLNDW-KKVFNRATVV 281 (1038)
Q Consensus 215 kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~----~L~~~-------lek~~~~~~d~-lIs~~-~~~~~~a~~v 281 (1038)
.=|+|.+|.... ..+..++.+..++.++.+..|-. .+... ++..+..-... ....+ ++..+.|..+
T Consensus 147 ~~d~vWvhDYhL-~llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~r~ 225 (797)
T PLN03063 147 EGDVVWCHDYHL-MFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACTRI 225 (797)
T ss_pred CCCEEEEecchh-hhHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHHHH
Confidence 348999999888 47777776667888999999971 11110 11111000000 00011 1112222221
Q ss_pred eccCCc-cccccccCCCCCEEEcCCCCCCccccccccchh--hH---HHHHhhCCCCCCEEEEEEecccccccccccHHH
Q 001646 282 VFPDYV-LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY--ND---TVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL 355 (1038)
Q Consensus 282 vfps~~-l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~--k~---~lReklgi~~d~~vIL~VGsrl~~~KGiKgldl 355 (1038)
.-.+.. ..+.+.+ ...++.++| +|+|...|....... +. .+++.++ ++++|+++| |+.+. ||++.
T Consensus 226 l~~~~~~~~i~~~g-r~~~I~viP-~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~Vg-RLd~~---KGi~~ 296 (797)
T PLN03063 226 LGVEGTHEGVVDQG-KVTRVAVFP-IGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVD-RLDMI---KGIPQ 296 (797)
T ss_pred hCccccCCceEECC-eEEEEEEEe-cccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEec-ccccc---cCHHH
Confidence 111111 1111111 124577888 489886554332211 11 3344433 567999999 88888 89999
Q ss_pred HHHHHHHchhhcccCCCCCCCEEEEEEeCCCC--CchHHHHHHHHHHcC--CCC--c-----eEEEcc-Ch--hhHHHHH
Q 001646 356 ILRALLPLFSEVSVENESNSPIKVMILSGDST--SNYSVVIEAIAHNLH--YPL--G-----VVKHMA-AE--GDVDSVL 421 (1038)
Q Consensus 356 LLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~--e~Y~~~LeeLa~qLg--L~d--~-----~V~flG-~~--edV~~lL 421 (1038)
+|+|+..+.+++|+ ...++.|+.++++.. ....+.+++.++++. ++. + -|.+++ .+ +++..+|
T Consensus 297 lL~Afe~lL~~~P~---~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly 373 (797)
T PLN03063 297 KYLAFEKFLEENPE---WRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALY 373 (797)
T ss_pred HHHHHHHHHHhCcc---ccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHH
Confidence 99999999988886 222355666664432 122344555555543 222 0 133333 33 7899999
Q ss_pred HhcCEEEEcccCCcCCcCHHHHHHHHcCCC----EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHH-cCCCcH
Q 001646 422 NTADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVIT-NGKISP 496 (1038)
Q Consensus 422 aaADIfVlPS~~EeqGFPlvLLEAMA~GkP----VIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLs-Dg~l~e 496 (1038)
+.||++|+||..| |||++++||||||+| +|+|..+|..+.+ +.+|++++|.|++++|++|.++++ + ++
T Consensus 374 ~~ADvfvvtSlrE--GmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m~---~~ 446 (797)
T PLN03063 374 AITDVMLVTSLRD--GMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNMS---DE 446 (797)
T ss_pred HhCCEEEeCcccc--ccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhCC---HH
Confidence 9999999999999 899999999999999 9999999999987 447999999999999999999999 5 67
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 001646 497 FARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 497 lr~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
++++..+.+++.+.++++...++.|.+.++.+.+
T Consensus 447 er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 447 ERETRHRHNFQYVKTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhh
Confidence 7778888899999999999999999998887754
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.74 E-value=4.1e-17 Score=202.61 Aligned_cols=293 Identities=8% Similarity=0.065 Sum_probs=190.1
Q ss_pred CCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCc----hhHHh-------HHHhhhhchhHH-HHHH-HHHHHhcceE
Q 001646 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATR-------ARNYASSGQLEL-LNDW-KKVFNRATVV 281 (1038)
Q Consensus 215 kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~----~L~~~-------lek~~~~~~d~l-Is~~-~~~~~~a~~v 281 (1038)
.-|+|.+|..... .+..++.++.+..++.+..|-. .+... +......-...+ ...+ +.....+..+
T Consensus 133 ~~d~vwvhDYhl~-l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~ 211 (726)
T PRK14501 133 PGDVVWVHDYQLM-LLPAMLRERLPDARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVRHFLSSVLRV 211 (726)
T ss_pred CCCEEEEeCchhh-hHHHHHHhhCCCCcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHH
Confidence 4589999998884 6677676667778999999961 01100 111100000000 0011 1111111111
Q ss_pred ec-cCCccccccccCCCCCEEEcCCCCCCccccccccchh-----hHHHHHhhCCCCCCEEEEEEecccccccccccHHH
Q 001646 282 VF-PDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL 355 (1038)
Q Consensus 282 vf-ps~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~-----k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldl 355 (1038)
.- +.....+.+.+- ..++.++| +|+|...|....... ...+|+. .+++++|+++| |+.+. ||+..
T Consensus 212 l~~~~~~~~~~~~gr-~~~v~v~p-~GID~~~f~~~~~~~~~~~~~~~lr~~---~~~~~~il~Vg-Rl~~~---Kgi~~ 282 (726)
T PRK14501 212 LGYETELGEIRLGGR-IVRVDAFP-MGIDYDKFHNSAQDPEVQEEIRRLRQD---LRGRKIILSID-RLDYT---KGIPR 282 (726)
T ss_pred cCCccCCCeEEECCE-EEEEEEEE-CeEcHHHHHHHhcCchHHHHHHHHHHH---cCCCEEEEEec-Ccccc---cCHHH
Confidence 10 100111111111 12467778 589986665433211 1223443 24667999999 88888 89999
Q ss_pred HHHHHHHchhhcccCCCCCCCEEEEEEeCCCC------CchHHHHHHHHHHcC-------CCCceEEEccCh--hhHHHH
Q 001646 356 ILRALLPLFSEVSVENESNSPIKVMILSGDST------SNYSVVIEAIAHNLH-------YPLGVVKHMAAE--GDVDSV 420 (1038)
Q Consensus 356 LLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~------e~Y~~~LeeLa~qLg-------L~d~~V~flG~~--edV~~l 420 (1038)
+++|+..+.+++|+ ...+++|+++|++.. ..+...+++++.+++ ... .+.+.|.. +++..+
T Consensus 283 ~l~A~~~ll~~~p~---~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p-v~~~~~~~~~~~l~~l 358 (726)
T PRK14501 283 RLLAFERFLEKNPE---WRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP-IHYFYRSLPFEELVAL 358 (726)
T ss_pred HHHHHHHHHHhCcc---ccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce-EEEEeCCCCHHHHHHH
Confidence 99999999888875 223478999984322 123444555544332 112 35566754 899999
Q ss_pred HHhcCEEEEcccCCcCCcCHHHHHHHHc-----CCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCc
Q 001646 421 LNTADVVIYGSFLEEQTFPEILVKALCF-----RKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKIS 495 (1038)
Q Consensus 421 LaaADIfVlPS~~EeqGFPlvLLEAMA~-----GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~ 495 (1038)
|+.||++|+||..| |||++++||||| |.||++...|++.+++ .|++++|.|++++|++|.+++++ +
T Consensus 359 y~~aDv~v~~S~~E--G~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d~~~la~ai~~~l~~---~ 429 (726)
T PRK14501 359 YRAADVALVTPLRD--GMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPNDIEGIAAAIKRALEM---P 429 (726)
T ss_pred HHhccEEEeccccc--ccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCCHHHHHHHHHHHHcC---C
Confidence 99999999999999 899999999999 4567777778888775 38999999999999999999986 5
Q ss_pred -HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 001646 496 -PFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 496 -elr~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
+.+.....++++.+.+|+++.+++.|.+.|+++.+
T Consensus 430 ~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 430 EEEQRERMQAMQERLRRYDVHKWASDFLDELREAAE 465 (726)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 34445556788999999999999999999988754
No 82
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.73 E-value=8e-16 Score=176.57 Aligned_cols=333 Identities=17% Similarity=0.090 Sum_probs=194.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC-cchhhhhhcCceEE-E---------------ccc-----
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVA-I---------------LQT----- 203 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g-~~~~~~e~~gI~v~-~---------------l~~----- 203 (1038)
+..++++....++....--.++..|.+.|+.|..+....- ............+. . ++.
T Consensus 5 ~~~~~~~~~~w~~~~~~~qhl~~~~a~~~~~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
T cd04950 5 PDILVFSADDWDFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQPRGRDWVRVVLRLRAALRRPRRLDPLIPARRRRLL 84 (373)
T ss_pred CeEEEecccCcCCCCCCHHHHHHHHHhCCCeEEEEeCCCccCCCCCCCcccEEeeecccccccCccccCccccchhhhHH
Confidence 3455555566666666666778888889999998876432 11100000000010 0 000
Q ss_pred chhHHHHhhh------cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHh
Q 001646 204 GREKASFVNW------LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNR 277 (1038)
Q Consensus 204 ~rkl~~lI~~------~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~ 277 (1038)
...+...+.+ ....+++.+.+... .+... ..+.++||.+++.-.. ... ............+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~~P~~~-~~~~~----~~~~~~Vyd~~D~~~~-----~~~-~~~~~~~~e~~~~~~ 153 (373)
T cd04950 85 RLLLNALLFWAQLELGFGRPILWYYTPYTL-PVAAL----LQASLVVYDCVDDLSA-----FPG-GPPELLEAERRLLKR 153 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCccHH-HHHhh----cCCCeEEEEcccchhc-----cCC-CCHHHHHHHHHHHHh
Confidence 0112222222 34445555555552 22222 4567899998862111 000 001112334456777
Q ss_pred cceEeccCCccccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHH
Q 001646 278 ATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALIL 357 (1038)
Q Consensus 278 a~~vvfps~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLL 357 (1038)
++.++..+..+.-...... .++.+||+ |+|...|......... .+. ....++++++|+| .+... ++++++.
T Consensus 154 ad~vi~~S~~l~~~~~~~~-~~i~~i~n-gvd~~~f~~~~~~~~~-~~~--~~~~~~~~i~y~G-~l~~~---~d~~ll~ 224 (373)
T cd04950 154 ADLVFTTSPSLYEAKRRLN-PNVVLVPN-GVDYEHFAAARDPPPP-PAD--LAALPRPVIGYYG-AIAEW---LDLELLE 224 (373)
T ss_pred CCEEEECCHHHHHHHhhCC-CCEEEccc-ccCHHHhhcccccCCC-hhH--HhcCCCCEEEEEe-ccccc---cCHHHHH
Confidence 8877766555332222222 67889984 8887555432211100 111 1234567999999 55554 6766555
Q ss_pred HHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCC
Q 001646 358 RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLE 434 (1038)
Q Consensus 358 eAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~E 434 (1038)
+++. ..|+ ++|+|+| |+.. ... ......+ +|+++|.. +++..+|+.+|++++|+..+
T Consensus 225 ~la~----~~p~-------~~~vliG~~~~~----~~~---~~~~~~~--nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~ 284 (373)
T cd04950 225 ALAK----ARPD-------WSFVLIGPVDVS----IDP---SALLRLP--NVHYLGPKPYKELPAYLAGFDVAILPFRLN 284 (373)
T ss_pred HHHH----HCCC-------CEEEEECCCcCc----cCh---hHhccCC--CEEEeCCCCHHHHHHHHHhCCEEecCCccc
Confidence 4443 3456 8999999 5222 111 1111233 69999987 89999999999999998532
Q ss_pred c---CCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 001646 435 E---QTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKN 511 (1038)
Q Consensus 435 e---qGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~ 511 (1038)
+ .++|++++||||||+|||+|+.+.+. ..+..+++ .++|+++++++|.+++.+ +...... ++++.+++
T Consensus 285 ~~~~~~~P~Kl~EylA~G~PVVat~~~~~~---~~~~~~~~-~~~d~~~~~~ai~~~l~~---~~~~~~~--~~~~~~~~ 355 (373)
T cd04950 285 ELTRATSPLKLFEYLAAGKPVVATPLPEVR---RYEDEVVL-IADDPEEFVAAIEKALLE---DGPARER--RRLRLAAQ 355 (373)
T ss_pred hhhhcCCcchHHHHhccCCCEEecCcHHHH---hhcCcEEE-eCCCHHHHHHHHHHHHhc---CCchHHH--HHHHHHHH
Confidence 1 26899999999999999999876544 33333444 456999999999998765 3322211 22236688
Q ss_pred hCHHHHHHHHHHHHHH
Q 001646 512 LMALETIEGYAMLLEN 527 (1038)
Q Consensus 512 Fs~e~ia~~Y~~Lye~ 527 (1038)
++|+..++++.+.+++
T Consensus 356 ~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 356 NSWDARAAEMLEALQE 371 (373)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999866654
No 83
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=1.3e-14 Score=155.30 Aligned_cols=176 Identities=24% Similarity=0.351 Sum_probs=150.9
Q ss_pred EEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccC
Q 001646 335 LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA 413 (1038)
Q Consensus 335 ~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~ 413 (1038)
..++++| ++.+. |+++.+++++..+....++ +.++++| |... ...+..++.+++..+ .|.++|.
T Consensus 200 ~~i~~~g-~~~~~---k~~~~~i~~~~~~~~~~~~-------~~~~~~g~~~~~---~~~~~~~~~~~~~~~-~v~~~g~ 264 (381)
T COG0438 200 FVVLYVG-RLDPE---KGLDLLIEAAAKLKKRGPD-------IKLVIVGDGPER---REELEKLAKKLGLED-NVKFLGY 264 (381)
T ss_pred eEEEEee-ccChh---cCHHHHHHHHHHhhhhcCC-------eEEEEEcCCCcc---HHHHHHHHHHhCCCC-cEEEecc
Confidence 6999999 67776 8999999999999987765 8999999 5542 245666888888766 7999998
Q ss_pred hh--hHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 414 EG--DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 414 ~e--dV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
.. ++..+++.||++++||..| +||++++|||++|+|||+++.++..+++.++.+|++++..+++++++++..++++
T Consensus 265 ~~~~~~~~~~~~~~~~v~ps~~e--~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 265 VPDEELAELLASADVFVLPSLSE--GFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLED 342 (381)
T ss_pred cCHHHHHHHHHhCCEEEeccccc--cchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcC
Confidence 74 7888999999999999887 7999999999999999999999999999988778888777899999999999999
Q ss_pred CCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHhhc
Q 001646 492 GKISPFARNIASIGRRSV-KNLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 492 g~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
++.++.++..+++.+ +.|+|+.+++.+.+++.....
T Consensus 343 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 343 ---PELREELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred ---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 777778887666666 689999999999999887653
No 84
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.72 E-value=6.1e-16 Score=176.79 Aligned_cols=334 Identities=12% Similarity=0.080 Sum_probs=196.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCce-----EEE-----------cccchhHH
Q 001646 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVP-----VAI-----------LQTGREKA 208 (1038)
Q Consensus 145 prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~-----v~~-----------l~~~rkl~ 208 (1038)
++|.++.++ .||.-.-.. +++.|++.++++.++...........-..+++ +.. +.....+.
T Consensus 2 ~ki~i~~Gg--t~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 78 (380)
T PRK00025 2 LRIAIVAGE--VSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCESLFDMEELAVMGLVEVLPRLPRLLKIRRRLK 78 (380)
T ss_pred ceEEEEecC--cCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCccccCHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 355555554 667666666 99999999999999886542211110000111 111 11122345
Q ss_pred HHhhhcCCcEEEEcCCch-hHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc
Q 001646 209 SFVNWLNYDGILVNSLEA-KVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (1038)
Q Consensus 209 ~lI~~~kpDIVhvhs~~~-~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~ 287 (1038)
++++..+||+||++.... ...+...+ +..++|+++..+..... +.... . ......++.+...+..
T Consensus 79 ~~l~~~kPdivi~~~~~~~~~~~a~~a--~~~~ip~i~~~~~~~~~-~~~~~--------~---~~~~~~~d~i~~~~~~ 144 (380)
T PRK00025 79 RRLLAEPPDVFIGIDAPDFNLRLEKKL--RKAGIPTIHYVSPSVWA-WRQGR--------A---FKIAKATDHVLALFPF 144 (380)
T ss_pred HHHHHcCCCEEEEeCCCCCCHHHHHHH--HHCCCCEEEEeCCchhh-cCchH--------H---HHHHHHHhhheeCCcc
Confidence 557778999999986432 11222222 23479998776642111 11000 0 1112233333332222
Q ss_pred cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEE-EecccccccccccHHHHHHHHHHchhh
Q 001646 288 LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAI-VGTQFMYRGLWLEHALILRALLPLFSE 366 (1038)
Q Consensus 288 l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~-VGsrl~~~KGiKgldlLLeAl~~L~~k 366 (1038)
......... .++.++. +++... . .....+...+.+++++++.++++. .|++....+ +.++.+++|+..+.++
T Consensus 145 ~~~~~~~~g-~~~~~~G-~p~~~~--~-~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~--~~~~~l~~a~~~l~~~ 217 (380)
T PRK00025 145 EAAFYDKLG-VPVTFVG-HPLADA--I-PLLPDRAAARARLGLDPDARVLALLPGSRGQEIK--RLLPPFLKAAQLLQQR 217 (380)
T ss_pred CHHHHHhcC-CCeEEEC-cCHHHh--c-ccccChHHHHHHcCCCCCCCEEEEECCCCHHHHH--HHHHHHHHHHHHHHHh
Confidence 111111111 1233333 343221 1 111124567788998877766544 454554420 2367889999999877
Q ss_pred cccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHc-CCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHH
Q 001646 367 VSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNL-HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKA 445 (1038)
Q Consensus 367 ~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qL-gL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEA 445 (1038)
+|+ ++++++||.. .+.+.++++++++ ++. |.+.. .++..+|+.||++|.+| |.+.+||
T Consensus 218 ~~~-------~~~ii~~~~~--~~~~~~~~~~~~~~~~~---v~~~~--~~~~~~~~~aDl~v~~s-------G~~~lEa 276 (380)
T PRK00025 218 YPD-------LRFVLPLVNP--KRREQIEEALAEYAGLE---VTLLD--GQKREAMAAADAALAAS-------GTVTLEL 276 (380)
T ss_pred CCC-------eEEEEecCCh--hhHHHHHHHHhhcCCCC---eEEEc--ccHHHHHHhCCEEEECc-------cHHHHHH
Confidence 777 8999998522 1236677777766 543 44433 58999999999999987 5677799
Q ss_pred HHcCCCEEEc-----------------CCcccccccccCc--cEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001646 446 LCFRKPIIAP-----------------DLSNIRKYVDDRV--NGYLFPKENIKALTHIILQVITNGKISPFARNIASIGR 506 (1038)
Q Consensus 446 MA~GkPVIaT-----------------dvgGi~EiV~dG~--nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~ar 506 (1038)
|++|+|||++ +.+++++++.++. .+++.+..|+++++++|..+++| ++.+++|++++.
T Consensus 277 ~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~ 353 (380)
T PRK00025 277 ALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLAD---GARRQALLEGFT 353 (380)
T ss_pred HHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 9999999986 5566678776653 45777778999999999999999 999999999886
Q ss_pred HHHHhhCHHHHHHHHHHHHHH
Q 001646 507 RSVKNLMALETIEGYAMLLEN 527 (1038)
Q Consensus 507 e~ak~Fs~e~ia~~Y~~Lye~ 527 (1038)
+..+.. ....+++..+++.+
T Consensus 354 ~~~~~~-~~~a~~~~~~~i~~ 373 (380)
T PRK00025 354 ELHQQL-RCGADERAAQAVLE 373 (380)
T ss_pred HHHHHh-CCCHHHHHHHHHHH
Confidence 655443 22233444444433
No 85
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.72 E-value=7.9e-16 Score=175.59 Aligned_cols=335 Identities=14% Similarity=0.128 Sum_probs=197.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCCCc--chhhhhhcCceE-E--Eccc--c----------hhH
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLEDGR--AHEVWRNIGVPV-A--ILQT--G----------REK 207 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~-G~eV~V~t~~~g~--~~~~~e~~gI~v-~--~l~~--~----------rkl 207 (1038)
+|++++++ -..-..+..+.+.|++. +.++.++..+... .....+.++++. . .+.. . ..+
T Consensus 2 ~i~~~~gt---r~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (365)
T TIGR00236 2 KVSIVLGT---RPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGL 78 (365)
T ss_pred eEEEEEec---CHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHH
Confidence 56666553 22233466777888775 5666666554321 223334455541 1 1111 0 234
Q ss_pred HHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHH-HhcceEeccCC
Q 001646 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVF-NRATVVVFPDY 286 (1038)
Q Consensus 208 ~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~-~~a~~vvfps~ 286 (1038)
.+.++..+||+||+|+.....+.+.++. ...++|++.+-++..-... + ....+.. .+... ..++.+..++.
T Consensus 79 ~~~l~~~~pDiv~~~gd~~~~la~a~aa-~~~~ipv~h~~~g~~s~~~---~-~~~~~~~---~r~~~~~~ad~~~~~s~ 150 (365)
T TIGR00236 79 EELLLEEKPDIVLVQGDTTTTLAGALAA-FYLQIPVGHVEAGLRTGDR---Y-SPMPEEI---NRQLTGHIADLHFAPTE 150 (365)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHHHHHH-HHhCCCEEEEeCCCCcCCC---C-CCCccHH---HHHHHHHHHHhccCCCH
Confidence 5567778999999997654323344443 3668998754333100000 0 0000000 01111 12333333333
Q ss_pred c--cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccc-cccccccHHHHHHHHHHc
Q 001646 287 V--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFM-YRGLWLEHALILRALLPL 363 (1038)
Q Consensus 287 ~--l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~-~~KGiKgldlLLeAl~~L 363 (1038)
. ..++..+++.+++.++++..+|.... ......+..++++++. ++.++++.+.+.. .. |+++.+++|+..+
T Consensus 151 ~~~~~l~~~G~~~~~I~vign~~~d~~~~-~~~~~~~~~~~~~~~~--~~~~vl~~~hr~~~~~---k~~~~ll~a~~~l 224 (365)
T TIGR00236 151 QAKDNLLRENVKADSIFVTGNTVIDALLT-NVEIAYSSPVLSEFGE--DKRYILLTLHRRENVG---EPLENIFKAIREI 224 (365)
T ss_pred HHHHHHHHcCCCcccEEEeCChHHHHHHH-HHhhccchhHHHhcCC--CCCEEEEecCchhhhh---hHHHHHHHHHHHH
Confidence 3 22334467778888888532343111 1111113345566652 3345666664543 33 7899999999998
Q ss_pred hhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHH
Q 001646 364 FSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (1038)
Q Consensus 364 ~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlv 441 (1038)
.+++|+ ++++++|++.. ...+.+.+.++..+ +|.++|.. .++..+++.||++|.+| |..
T Consensus 225 ~~~~~~-------~~~vi~~~~~~----~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~ad~vv~~S-------g~~ 285 (365)
T TIGR00236 225 VEEFED-------VQIVYPVHLNP----VVREPLHKHLGDSK-RVHLIEPLEYLDFLNLAANSHLILTDS-------GGV 285 (365)
T ss_pred HHHCCC-------CEEEEECCCCh----HHHHHHHHHhCCCC-CEEEECCCChHHHHHHHHhCCEEEECC-------hhH
Confidence 877777 88888874332 12223445556655 79999966 57788999999999887 345
Q ss_pred HHHHHHcCCCEEEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHH
Q 001646 442 LVKALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEG 520 (1038)
Q Consensus 442 LLEAMA~GkPVIaT-dvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~ 520 (1038)
++|||+||+|||++ +.++.++.+.+|. +++++ .|+++++++|.+++++ ++.+++|+.+...+.+...++++++.
T Consensus 286 ~~EA~a~g~PvI~~~~~~~~~e~~~~g~-~~lv~-~d~~~i~~ai~~ll~~---~~~~~~~~~~~~~~g~~~a~~ri~~~ 360 (365)
T TIGR00236 286 QEEAPSLGKPVLVLRDTTERPETVEAGT-NKLVG-TDKENITKAAKRLLTD---PDEYKKMSNASNPYGDGEASERIVEE 360 (365)
T ss_pred HHHHHHcCCCEEECCCCCCChHHHhcCc-eEEeC-CCHHHHHHHHHHHHhC---hHHHHHhhhcCCCCcCchHHHHHHHH
Confidence 79999999999995 7788889888764 55664 6999999999999999 88888887665333333444444444
Q ss_pred H
Q 001646 521 Y 521 (1038)
Q Consensus 521 Y 521 (1038)
.
T Consensus 361 l 361 (365)
T TIGR00236 361 L 361 (365)
T ss_pred H
Confidence 3
No 86
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.66 E-value=2.2e-14 Score=157.33 Aligned_cols=188 Identities=16% Similarity=0.199 Sum_probs=154.5
Q ss_pred CCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe---CCCCCchHHHHHHHHHHcCCCCce
Q 001646 331 KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS---GDSTSNYSVVIEAIAHNLHYPLGV 407 (1038)
Q Consensus 331 ~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG---G~~~e~Y~~~LeeLa~qLgL~d~~ 407 (1038)
..+.+.++++| ++.++ |++. +|+.++....+.|. ....++++|+|+| +...+++-+.++.++++|++++ +
T Consensus 266 ~~r~~~ll~l~-Q~RPE---KnH~-~Lql~Al~~~~~pl-~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~-~ 338 (465)
T KOG1387|consen 266 GERENQLLSLA-QFRPE---KNHK-ILQLFALYLKNEPL-EASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPK-H 338 (465)
T ss_pred CCcceEEEEEe-ecCcc---cccH-HHHHHHHHHhcCch-hhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCcc-c
Confidence 45667899999 99998 8888 56655554444444 2345679999999 4455667788999999999999 8
Q ss_pred EEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccc-ccccc---CccEEEEcCCCHHHH
Q 001646 408 VKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR-KYVDD---RVNGYLFPKENIKAL 481 (1038)
Q Consensus 408 V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~-EiV~d---G~nGlLv~~~D~eaL 481 (1038)
|.|.-.. +++..+|..|.+.|..-..|. ||+.++|+||+|+-.|+.+.||.. ++|.+ ..+|++.+ +.++.
T Consensus 339 v~F~~N~Py~~lv~lL~~a~iGvh~MwNEH--FGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~--t~~EY 414 (465)
T KOG1387|consen 339 VQFEKNVPYEKLVELLGKATIGVHTMWNEH--FGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP--TDEEY 414 (465)
T ss_pred eEEEecCCHHHHHHHhccceeehhhhhhhh--cchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC--ChHHH
Confidence 9998755 899999999999999999985 999999999999999999988875 66643 35799985 78999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhcC
Q 001646 482 THIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL 531 (1038)
Q Consensus 482 AeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vLk~ 531 (1038)
|++|.+++..+ ++.+..|+.+||..+.+|+..+..+-+...+.+++.-
T Consensus 415 aE~iLkIv~~~--~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 415 AEAILKIVKLN--YDERNMMRRNARKSLARFGELKFDKDWENPICKLLEE 462 (465)
T ss_pred HHHHHHHHHcC--HHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhcc
Confidence 99999999862 4557789999999999999999999999888888764
No 87
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.65 E-value=9.9e-15 Score=172.32 Aligned_cols=207 Identities=8% Similarity=0.021 Sum_probs=163.6
Q ss_pred EEEcCCCCCCccccccccchh-----hHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCC
Q 001646 300 YYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (1038)
Q Consensus 300 i~VIPgsgVD~~~f~~~~~~~-----k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~ 374 (1038)
+.++| +|||...|....... ...+|++++ ++.+|+.++ |+.+. ||+...++|+..+.+++|+ -.
T Consensus 250 v~~~P-iGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~kiIl~VD-RLDy~---KGI~~kl~Afe~~L~~~Pe---~~ 318 (487)
T TIGR02398 250 LGAHP-VGTDPERIRSALAAASIREMMERIRSELA---GVKLILSAE-RVDYT---KGILEKLNAYERLLERRPE---LL 318 (487)
T ss_pred EEEEE-CEecHHHHHHHhcCchHHHHHHHHHHHcC---CceEEEEec-ccccc---cCHHHHHHHHHHHHHhCcc---cc
Confidence 56667 688887664432211 345677776 577999999 99998 8888889999999999986 44
Q ss_pred CCEEEEEEeCCCC------CchHHHHHHHHHHc-------CCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcC
Q 001646 375 SPIKVMILSGDST------SNYSVVIEAIAHNL-------HYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFP 439 (1038)
Q Consensus 375 ~~vkLVIVGG~~~------e~Y~~~LeeLa~qL-------gL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFP 439 (1038)
.+++|+++|.+.. ..+...+++++.+. +... .+.+.+.+ +++..+|+.|||++.||..| |++
T Consensus 319 gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~p-v~~~~~~v~~~el~alYr~ADV~lvT~lrD--GmN 395 (487)
T TIGR02398 319 GKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTP-LQFFTRSLPYEEVSAWFAMADVMWITPLRD--GLN 395 (487)
T ss_pred CceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCcc-EEEEcCCCCHHHHHHHHHhCCEEEECcccc--ccC
Confidence 5689999994432 23566777777664 5555 67788865 89999999999999999999 899
Q ss_pred HHHHHHHHcCC----CEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHHHhhCH
Q 001646 440 EILVKALCFRK----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFA-RNIASIGRRSVKNLMA 514 (1038)
Q Consensus 440 lvLLEAMA~Gk----PVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr-~~mg~~are~ak~Fs~ 514 (1038)
++..|+|||+. |+|.|..+|..+.+. .+++++|.|++++|++|.+.++. +... ++--+..++.+..++.
T Consensus 396 LVa~Eyva~~~~~~GvLILSefaGaa~~l~---~AllVNP~d~~~~A~ai~~AL~m---~~~Er~~R~~~l~~~v~~~d~ 469 (487)
T TIGR02398 396 LVAKEYVAAQGLLDGVLVLSEFAGAAVELK---GALLTNPYDPVRMDETIYVALAM---PKAEQQARMREMFDAVNYYDV 469 (487)
T ss_pred cchhhHHhhhcCCCCCEEEeccccchhhcC---CCEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhhCCH
Confidence 99999999998 999999999998774 48999999999999999999998 5433 3444556677788999
Q ss_pred HHHHHHHHHHHH
Q 001646 515 LETIEGYAMLLE 526 (1038)
Q Consensus 515 e~ia~~Y~~Lye 526 (1038)
...++.+..-++
T Consensus 470 ~~W~~~fl~~l~ 481 (487)
T TIGR02398 470 QRWADEFLAAVS 481 (487)
T ss_pred HHHHHHHHHHhh
Confidence 998888876554
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.64 E-value=1.6e-14 Score=163.54 Aligned_cols=315 Identities=12% Similarity=0.021 Sum_probs=183.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCCCcch-----hhhh--hcCceEEE--ccc-----------c
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLEDGRAH-----EVWR--NIGVPVAI--LQT-----------G 204 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~-G~eV~V~t~~~g~~~-----~~~e--~~gI~v~~--l~~-----------~ 204 (1038)
+|++|++.- ..-..+.-+.+.|++. |+++.++..+..-.. ..+. ..+..+.. ... .
T Consensus 1 ~i~~~~gtr---~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (363)
T cd03786 1 KILVVTGTR---PEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLL 77 (363)
T ss_pred CEEEEEecC---HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHH
Confidence 355555532 1223466778888886 899998776532111 1111 11111211 111 1
Q ss_pred hhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHH-HHHhcceEec
Q 001646 205 REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKK-VFNRATVVVF 283 (1038)
Q Consensus 205 rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~-~~~~a~~vvf 283 (1038)
..+...+...+||+||+|......+.+.++. +..++|++.+.||..-... ..... ..+. ....++.++.
T Consensus 78 ~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa-~~~~iPvv~~~~g~~s~~~------~~~~~---~~r~~~~~~ad~~~~ 147 (363)
T cd03786 78 IGLEAVLLEEKPDLVLVLGDTNETLAAALAA-FKLGIPVAHVEAGLRSFDR------GMPDE---ENRHAIDKLSDLHFA 147 (363)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHH-HHcCCCEEEEecccccCCC------CCCch---HHHHHHHHHhhhccC
Confidence 2234446667999999997544223333343 3568998876654211000 00000 0011 1223343333
Q ss_pred cCCc--cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHH
Q 001646 284 PDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALL 361 (1038)
Q Consensus 284 ps~~--l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~ 361 (1038)
++.. ..+...+++.+++.++++..+|...+.. ........+..++++++.++++++| +.......|+++.+++|+.
T Consensus 148 ~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~vlv~~~-r~~~~~~~k~~~~l~~al~ 225 (363)
T cd03786 148 PTEEARRNLLQEGEPPERIFVVGNTMIDALLRLL-ELAKKELILELLGLLPKKYILVTLH-RVENVDDGEQLEEILEALA 225 (363)
T ss_pred CCHHHHHHHHHcCCCcccEEEECchHHHHHHHHH-HhhccchhhhhcccCCCCEEEEEeC-CccccCChHHHHHHHHHHH
Confidence 3333 2233446777888888853345421110 0111122345677776666666777 5443112288999999999
Q ss_pred HchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCC-CCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCC
Q 001646 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHY-PLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQT 437 (1038)
Q Consensus 362 ~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL-~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqG 437 (1038)
.+... + +.+++.| ++.. ..+++.+.++++ .+ +|.|+|.. +++..+|++||++|.+| |
T Consensus 226 ~l~~~--~-------~~vi~~~~~~~~----~~l~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~ad~~v~~S-----g 286 (363)
T cd03786 226 ELAEE--D-------VPVVFPNHPRTR----PRIREAGLEFLGHHP-NVLLISPLGYLYFLLLLKNADLVLTDS-----G 286 (363)
T ss_pred HHHhc--C-------CEEEEECCCChH----HHHHHHHHhhccCCC-CEEEECCcCHHHHHHHHHcCcEEEEcC-----c
Confidence 88643 3 5666666 4433 677888887776 44 79999754 78999999999999998 2
Q ss_pred cCHHHHHHHHcCCCEEEcCC-cccccccccCccEEEEcC-CCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 001646 438 FPEILVKALCFRKPIIAPDL-SNIRKYVDDRVNGYLFPK-ENIKALTHIILQVITNGKISPFARNIA 502 (1038)
Q Consensus 438 FPlvLLEAMA~GkPVIaTdv-gGi~EiV~dG~nGlLv~~-~D~eaLAeAI~~LLsDg~l~elr~~mg 502 (1038)
| ++.|||++|+|||+++. +..++.+.+| ..+.. .|+++++++|..++++ +....+|.
T Consensus 287 -g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~g---~~~~~~~~~~~i~~~i~~ll~~---~~~~~~~~ 345 (363)
T cd03786 287 -G-IQEEASFLGVPVLNLRDRTERPETVESG---TNVLVGTDPEAILAAIEKLLSD---EFAYSLMS 345 (363)
T ss_pred -c-HHhhhhhcCCCEEeeCCCCccchhhhee---eEEecCCCHHHHHHHHHHHhcC---chhhhcCC
Confidence 3 47999999999999864 4456666654 33333 3799999999999999 77776663
No 89
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.59 E-value=2.5e-13 Score=153.99 Aligned_cols=286 Identities=11% Similarity=0.051 Sum_probs=178.4
Q ss_pred CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCC-cEEEEcCCchhHH-H-HH
Q 001646 156 IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNY-DGILVNSLEAKVV-I-SN 232 (1038)
Q Consensus 156 iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kp-DIVhvhs~~~~~~-l-a~ 232 (1038)
..|+...-..+.+.+.+.|+++..+...+.. ...+. .....+..++...++ |+||++++...+. + ..
T Consensus 14 ~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~Dvv~~~~P~~~~~~~~~~ 83 (333)
T PRK09814 14 NSAALKAKNDVTKIAKQLGFEELGIYFYNIK-RDSLS---------ERSKRLDGILASLKPGDIVIFQFPTWNGFEFDRL 83 (333)
T ss_pred cchHHHHHHHHHHHHHHCCCeEeEEEecccc-cchHH---------HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHH
Confidence 4567778888899999999987665432211 00000 011123334555666 9999999866431 1 22
Q ss_pred HH-hCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCcc--ccccccCCCCCEEEcCCCCCC
Q 001646 233 IM-QEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMMYSAFDAGNYYVIPGSPAK 309 (1038)
Q Consensus 233 La-~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l--~viyn~vd~~ki~VIPgsgVD 309 (1038)
++ ..+..++|+|+++|+.... .... . ..........++.++.+++++... .+...+++..++.++++.. .
T Consensus 84 ~~~~~k~~~~k~i~~ihD~~~~-~~~~---~--~~~~~~~~~~~~~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~~~~-~ 156 (333)
T PRK09814 84 FVDKLKKKQVKIIILIHDIEPL-RFDS---N--YYLMKEEIDMLNLADVLIVHSKKMKDRLVEEGLTTDKIIVQGIFD-Y 156 (333)
T ss_pred HHHHHHHcCCEEEEEECCcHHH-hccc---c--chhhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcCceEeccccc-c
Confidence 22 1122379999999972211 1110 0 001223345778889888887762 2223455556676665311 1
Q ss_pred ccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCC
Q 001646 310 AWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTS 388 (1038)
Q Consensus 310 ~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e 388 (1038)
.. .... + ......+.|+|+| ++... .. +. ...++ ++|+|+| |+...
T Consensus 157 ~~---~~~~------~---~~~~~~~~i~yaG-~l~k~----~~---l~------~~~~~-------~~l~i~G~g~~~~ 203 (333)
T PRK09814 157 LN---DIEL------V---KTPSFQKKINFAG-NLEKS----PF---LK------NWSQG-------IKLTVFGPNPEDL 203 (333)
T ss_pred cc---cccc------c---ccccCCceEEEec-Chhhc----hH---HH------hcCCC-------CeEEEECCCcccc
Confidence 10 0000 0 0122455899999 65542 11 11 12234 8999999 76541
Q ss_pred chHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccC-------C--cCCcCHHHHHHHHcCCCEEEcCC
Q 001646 389 NYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL-------E--EQTFPEILVKALCFRKPIIAPDL 457 (1038)
Q Consensus 389 ~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~-------E--eqGFPlvLLEAMA~GkPVIaTdv 457 (1038)
...+ +|.|+|+. +++..+|+. |+.+.+... + .-.+|.++.|+||||+|||+++.
T Consensus 204 -------------~~~~-~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~ 268 (333)
T PRK09814 204 -------------ENSA-NISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSK 268 (333)
T ss_pred -------------ccCC-CeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCC
Confidence 2334 79999977 888889988 654443211 1 11589999999999999999999
Q ss_pred cccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhC
Q 001646 458 SNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLM 513 (1038)
Q Consensus 458 gGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs 513 (1038)
+++.++|.++.+|++++ +.++++++|..+. ++.+++|++++++.++.+.
T Consensus 269 ~~~~~~V~~~~~G~~v~--~~~el~~~l~~~~-----~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 269 AAIADFIVENGLGFVVD--SLEELPEIIDNIT-----EEEYQEMVENVKKISKLLR 317 (333)
T ss_pred ccHHHHHHhCCceEEeC--CHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998 7889999999853 4667889999999997633
No 90
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.4e-12 Score=139.71 Aligned_cols=347 Identities=14% Similarity=0.126 Sum_probs=211.1
Q ss_pred CCCCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC-cchhhhhhcCceEEEcccchh------H------
Q 001646 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVAILQTGRE------K------ 207 (1038)
Q Consensus 141 ~~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g-~~~~~~e~~gI~v~~l~~~rk------l------ 207 (1038)
+.++.-+++|+++++.+. .+..-|..|++.|++|.++...+. +........+++++.++.... +
T Consensus 10 ~~k~ra~vvVLGDvGRSP---RMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~~~~~~p~~~~l~lK 86 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSP---RMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLPFLQGGPRVLFLPLK 86 (444)
T ss_pred cccceEEEEEecccCCCh---HHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCcccCCCchhhhhHHH
Confidence 445666788999876543 456678889999999999988664 555566666666655443210 0
Q ss_pred ---------HHHhhhcCCcEEEEcCCchhHHH-HHHHhCCCCCCCEEEEEeCch-----------------hHHhHHHhh
Q 001646 208 ---------ASFVNWLNYDGILVNSLEAKVVI-SNIMQEPFKSLPLVWTIHEGT-----------------LATRARNYA 260 (1038)
Q Consensus 208 ---------~~lI~~~kpDIVhvhs~~~~~~l-a~La~~~~~gIPvI~tiHg~~-----------------L~~~lek~~ 260 (1038)
..+.-...+|+|.++.+.+.+.+ ...+.....+.++|..+|+.. +..|++++.
T Consensus 87 vf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~f 166 (444)
T KOG2941|consen 87 VFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYF 166 (444)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHh
Confidence 00111268999999998874432 233333467889999999821 223456666
Q ss_pred hhchhHHHHHHHHHHH-hcc------eEeccCCccccccccCCC--CCEEEcCCCCCCccccccc---cch-hhHHHHHh
Q 001646 261 SSGQLELLNDWKKVFN-RAT------VVVFPDYVLPMMYSAFDA--GNYYVIPGSPAKAWEADTN---MDL-YNDTVRVK 327 (1038)
Q Consensus 261 ~~~~d~lIs~~~~~~~-~a~------~vvfps~~l~viyn~vd~--~ki~VIPgsgVD~~~f~~~---~~~-~k~~lRek 327 (1038)
.+.++..++..+..-. ..+ ..++-+..-. -...++. +-+.-+.+ |...|..- .+. ....+-++
T Consensus 167 gk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps-~~~~l~~~H~lf~~l~~---d~~~f~ar~~q~~~~~~taf~~k 242 (444)
T KOG2941|consen 167 GKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPS-KPTPLDEQHELFMKLAG---DHSPFRAREPQDKALERTAFTKK 242 (444)
T ss_pred hcccccchhhHHHHHHHHHHhcCCceeEEEecCCCC-CCCchhHHHHHHhhhcc---ccchhhhcccccchhhhhhHhhh
Confidence 6655544444333211 000 1111000000 0000000 00000000 00000000 000 01111122
Q ss_pred hC-----CCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHc
Q 001646 328 MG-----FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNL 401 (1038)
Q Consensus 328 lg-----i~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qL 401 (1038)
.. ..++.+.++.......++ .++.+|++|+....++..+..-.-+++-++|.| ||.. +.+.+.++++
T Consensus 243 ~~s~~v~~~~~~pallvsSTswTpD---Edf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlk----E~Y~~~I~~~ 315 (444)
T KOG2941|consen 243 DASGDVQLLPERPALLVSSTSWTPD---EDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLK----EKYSQEIHEK 315 (444)
T ss_pred cccchhhhccCCCeEEEecCCCCCc---ccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchh----HHHHHHHHHh
Confidence 11 123334444444477787 899999999986544332222334558888889 9998 5555668888
Q ss_pred CCCCceEEEc-cC--hhhHHHHHHhcCEEEE--cccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCC
Q 001646 402 HYPLGVVKHM-AA--EGDVDSVLNTADVVIY--GSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKE 476 (1038)
Q Consensus 402 gL~d~~V~fl-G~--~edV~~lLaaADIfVl--PS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~ 476 (1038)
++.. |.+. .+ .+|.+.+++.||+.|+ +|..-- -.|++++..+.||+||+|-+..-+.|+|.+|+||++|.
T Consensus 316 ~~~~--v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGL-DLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~-- 390 (444)
T KOG2941|consen 316 NLQH--VQVCTPWLEAEDYPKLLASADLGVCLHTSSSGL-DLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFE-- 390 (444)
T ss_pred cccc--eeeeecccccccchhHhhccccceEeeecCccc-CcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEec--
Confidence 8887 4443 23 3899999999998665 332211 38999999999999999999999999999999999997
Q ss_pred CHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHH
Q 001646 477 NIKALTHIILQVIT----NGKISPFARNIASIGRRSV 509 (1038)
Q Consensus 477 D~eaLAeAI~~LLs----Dg~l~elr~~mg~~are~a 509 (1038)
|.++||+.+.-+++ + .....++..+.++..
T Consensus 391 Ds~eLa~ql~~lf~~fp~~---a~~l~~lkkn~~e~~ 424 (444)
T KOG2941|consen 391 DSEELAEQLQMLFKNFPDN---ADELNQLKKNLREEQ 424 (444)
T ss_pred cHHHHHHHHHHHHhcCCCC---HHHHHHHHHhhHHHH
Confidence 89999999999998 6 667778888887774
No 91
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.53 E-value=2.2e-14 Score=139.87 Aligned_cols=131 Identities=22% Similarity=0.309 Sum_probs=94.8
Q ss_pred EEEEEEecccccccccccHHHHHH-HHHHchhhcccCCCCCCCEEEEEEeC-CCCCchHHHHHHHHHHcCCCCceEEEcc
Q 001646 335 LVIAIVGTQFMYRGLWLEHALILR-ALLPLFSEVSVENESNSPIKVMILSG-DSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (1038)
Q Consensus 335 ~vIL~VGsrl~~~KGiKgldlLLe-Al~~L~~k~p~~~~~~~~vkLVIVGG-~~~e~Y~~~LeeLa~qLgL~d~~V~flG 412 (1038)
++++++| +.... |+++.+++ |+.++.++.|+ ++|+|+|+ +. .++++ ..+ +|+++|
T Consensus 3 ~~i~~~g-~~~~~---k~~~~li~~~~~~l~~~~p~-------~~l~i~G~~~~------~l~~~-----~~~-~v~~~g 59 (135)
T PF13692_consen 3 LYIGYLG-RIRPD---KGLEELIEAALERLKEKHPD-------IELIIIGNGPD------ELKRL-----RRP-NVRFHG 59 (135)
T ss_dssp EEEE--S--SSGG---GTHHHHHH-HHHHHHHHSTT-------EEEEEECESS-------HHCCH-----HHC-TEEEE-
T ss_pred ccccccc-ccccc---ccccchhhhHHHHHHHHCcC-------EEEEEEeCCHH------HHHHh-----cCC-CEEEcC
Confidence 5788888 55555 89999999 99999999888 99999994 43 23333 122 699999
Q ss_pred ChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 413 AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 413 ~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
+.+++.++++.||++|.|+...+ ++|.+++|||++|+|||+++. +..+++.....|+++ .+|+++++++|.++++|
T Consensus 60 ~~~e~~~~l~~~dv~l~p~~~~~-~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 60 FVEELPEILAAADVGLIPSRFNE-GFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp S-HHHHHHHHC-SEEEE-BSS-S-CC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHhCCEEEEEeeCCC-cCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 99999999999999999997544 799999999999999999998 566777655567777 78999999999999876
No 92
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.53 E-value=1.8e-12 Score=150.19 Aligned_cols=321 Identities=12% Similarity=0.068 Sum_probs=183.2
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh-----hhhcCceEEE----cc-------cchhH
Q 001646 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-----WRNIGVPVAI----LQ-------TGREK 207 (1038)
Q Consensus 144 ~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~-----~e~~gI~v~~----l~-------~~rkl 207 (1038)
.|+|.++.++ .||--.-. .++++|++.|.++.++.......... +....+.+.- +. ...+.
T Consensus 5 ~~ki~i~aGg--tsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~ 81 (385)
T TIGR00215 5 IPTIALVAGE--ASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEV 81 (385)
T ss_pred CCeEEEEeCC--ccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 4677666654 66665556 99999999999999988764221110 1000111111 11 11233
Q ss_pred HHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHh---HHHhhhhchhHHHHHHHHHHHhcceEecc
Q 001646 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR---ARNYASSGQLELLNDWKKVFNRATVVVFP 284 (1038)
Q Consensus 208 ~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~---lek~~~~~~d~lIs~~~~~~~~a~~vvfp 284 (1038)
.+.++..+||+|++......++....+. +..++|+++.+.- ..-.| ..+...+..+.+++.+..
T Consensus 82 ~~~l~~~kPd~vi~~g~~~~~~~~a~aa-~~~gip~v~~i~P-~~waw~~~~~r~l~~~~d~v~~~~~~----------- 148 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDAPDFNLTKELKK-KDPGIKIIYYISP-QVWAWRKWRAKKIEKATDFLLAILPF----------- 148 (385)
T ss_pred HHHHHhcCCCEEEEeCCCCccHHHHHHH-hhCCCCEEEEeCC-cHhhcCcchHHHHHHHHhHhhccCCC-----------
Confidence 4456778999999988544222222232 4568999865431 00111 111222222332222211
Q ss_pred CCccccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEE-eccccc-ccccccHHHHHHHHHH
Q 001646 285 DYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIV-GTQFMY-RGLWLEHALILRALLP 362 (1038)
Q Consensus 285 s~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~V-Gsrl~~-~KGiKgldlLLeAl~~ 362 (1038)
....+...+ .+..++. .|+... .... ...+...|+.++++++.++|+++ |||..+ + |++..+++|+..
T Consensus 149 -e~~~~~~~g---~~~~~vG-nPv~~~-~~~~-~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~---k~~~~ll~a~~~ 218 (385)
T TIGR00215 149 -EKAFYQKKN---VPCRFVG-HPLLDA-IPLY-KPDRKSAREKLGIDHNGETLALLPGSRGSEVE---KLFPLFLKAAQL 218 (385)
T ss_pred -cHHHHHhcC---CCEEEEC-Cchhhh-cccc-CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHH---HhHHHHHHHHHH
Confidence 100000001 1233333 344221 1111 01245567888998887777655 557665 5 788899999999
Q ss_pred chhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHH
Q 001646 363 LFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEIL 442 (1038)
Q Consensus 363 L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvL 442 (1038)
+.+..|+ ++++++++... ....++++.++++... .|.+++. ++..+|++||++|.+| |.+.
T Consensus 219 l~~~~p~-------~~~vi~~~~~~--~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~l~aADl~V~~S-------Gt~t 279 (385)
T TIGR00215 219 LEQQEPD-------LRRVLPVVNFK--RRLQFEQIKAEYGPDL-QLHLIDG--DARKAMFAADAALLAS-------GTAA 279 (385)
T ss_pred HHHhCCC-------eEEEEEeCCch--hHHHHHHHHHHhCCCC-cEEEECc--hHHHHHHhCCEEeecC-------CHHH
Confidence 9888777 88887763321 1256677777776655 6766543 6778999999999999 4456
Q ss_pred HHHHHcCCCEEEcC-Ccc----------------cccccccCccE--EEEcCCCHHHHHHHHHHHHHcCCCc----HHHH
Q 001646 443 VKALCFRKPIIAPD-LSN----------------IRKYVDDRVNG--YLFPKENIKALTHIILQVITNGKIS----PFAR 499 (1038)
Q Consensus 443 LEAMA~GkPVIaTd-vgG----------------i~EiV~dG~nG--lLv~~~D~eaLAeAI~~LLsDg~l~----elr~ 499 (1038)
+|||++|+|+|... +.- .+.++.+.... ++-..-+++.+++.+.++++| + +.++
T Consensus 280 lEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~---~~~~~~~~~ 356 (385)
T TIGR00215 280 LEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLEN---GLKAYKEMH 356 (385)
T ss_pred HHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcC---CcccHHHHH
Confidence 69999999988762 211 12222221111 111234689999999999999 8 7777
Q ss_pred HHHHHHHHHHHhh
Q 001646 500 NIASIGRRSVKNL 512 (1038)
Q Consensus 500 ~mg~~are~ak~F 512 (1038)
++.+.-.+..+..
T Consensus 357 ~~~~~~~~~~~~l 369 (385)
T TIGR00215 357 RERQFFEELRQRI 369 (385)
T ss_pred HHHHHHHHHHHHh
Confidence 7766555554443
No 93
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.52 E-value=3.6e-13 Score=168.34 Aligned_cols=295 Identities=10% Similarity=0.097 Sum_probs=188.5
Q ss_pred CCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCc----hhHHh-------HHHhhhhchhHH-HHHHHH-HHHhcceE
Q 001646 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATR-------ARNYASSGQLEL-LNDWKK-VFNRATVV 281 (1038)
Q Consensus 215 kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~----~L~~~-------lek~~~~~~d~l-Is~~~~-~~~~a~~v 281 (1038)
.=|+|.+|.... .++..++.+..+..++-+.+|-. .++.. +...+..-...+ ...+.. ....|..+
T Consensus 231 ~gD~VWVHDYHL-~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDlIGFqT~~y~rhFl~~c~rl 309 (934)
T PLN03064 231 EGDVVWCHDYHL-MFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRI 309 (934)
T ss_pred CCCEEEEecchh-hHHHHHHHHhCCCCcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHH
Confidence 347999999887 47777776667888999999971 11110 111110000000 001111 11112111
Q ss_pred eccCCc-cccccccCCCCCEEEcCCCCCCccccccccchh-----hHHHHHhhCCCCCCEEEEEEecccccccccccHHH
Q 001646 282 VFPDYV-LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL 355 (1038)
Q Consensus 282 vfps~~-l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~-----k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldl 355 (1038)
.-.+.. ..+.+.+ ..-.+.+.| .|||...+....... ...++++++ ++.+|+.|+ |+.+. ||+..
T Consensus 310 Lg~~~~~~~v~~~G-r~v~V~~~P-iGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVD-RLD~~---KGI~~ 380 (934)
T PLN03064 310 LGLEGTPEGVEDQG-RLTRVAAFP-IGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVD-RLDMI---KGIPQ 380 (934)
T ss_pred hCccccCCeEEECC-EEEEEEEEe-CEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEee-ccccc---cCHHH
Confidence 111000 0011110 001233445 688886655432221 235666654 566999999 99998 88888
Q ss_pred HHHHHHHchhhcccCCCCCCCEEEEEEeCCC------CCchHHHHHHHHHHcCCCCc-----eEEEcc---ChhhHHHHH
Q 001646 356 ILRALLPLFSEVSVENESNSPIKVMILSGDS------TSNYSVVIEAIAHNLHYPLG-----VVKHMA---AEGDVDSVL 421 (1038)
Q Consensus 356 LLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~------~e~Y~~~LeeLa~qLgL~d~-----~V~flG---~~edV~~lL 421 (1038)
.++|+..+.+++|+ -..++.|+-+.-+. ...+...+.+++.+.+-.-+ -|.++. ..+++..+|
T Consensus 381 kL~AfE~fL~~~Pe---~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY 457 (934)
T PLN03064 381 KILAFEKFLEENPE---WRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALY 457 (934)
T ss_pred HHHHHHHHHHhCcc---ccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHH
Confidence 89999999998887 22335555444211 12233445555554331111 144443 228899999
Q ss_pred HhcCEEEEcccCCcCCcCHHHHHHHHcCC----CEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHH-cCCCcH
Q 001646 422 NTADVVIYGSFLEEQTFPEILVKALCFRK----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVIT-NGKISP 496 (1038)
Q Consensus 422 aaADIfVlPS~~EeqGFPlvLLEAMA~Gk----PVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLs-Dg~l~e 496 (1038)
+.|||+|+||..| ||+++..|||+|+. ++|.|..+|..+.+ +..+++++|.|++++|++|.+.+. + ++
T Consensus 458 ~~ADV~lvTslrD--GmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M~---~~ 530 (934)
T PLN03064 458 AVTDVALVTSLRD--GMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVAASIAQALNMP---EE 530 (934)
T ss_pred HhCCEEEeCcccc--ccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhCC---HH
Confidence 9999999999999 89999999999954 55559999999888 335899999999999999999999 6 67
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 001646 497 FARNIASIGRRSVKNLMALETIEGYAMLLENVL 529 (1038)
Q Consensus 497 lr~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vL 529 (1038)
++++....+++.+..+++...++.|.+-++.+.
T Consensus 531 Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 531 EREKRHRHNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 777888999999999999999999887776653
No 94
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.51 E-value=2.5e-13 Score=162.47 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=146.1
Q ss_pred EEEEEe-cccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCC---------
Q 001646 336 VIAIVG-TQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYP--------- 404 (1038)
Q Consensus 336 vIL~VG-srl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~--------- 404 (1038)
.+++++ -|+ ++ |.++.+|+|+..+.+++|+ ++|.+.| |.. ..+...++++++++++.
T Consensus 321 ~~I~v~idrL-~e---k~~~~~I~av~~~~~~~p~-------~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~ 388 (519)
T TIGR03713 321 TEIGFWIDGL-SD---EELQQILQQLLQYILKNPD-------YELKILTYNND-NDITQLLEDILEQINEEYNQDKNFFS 388 (519)
T ss_pred eEEEEEcCCC-Ch---HHHHHHHHHHHHHHhhCCC-------eEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhccc
Confidence 445554 144 55 8999999999999999999 9999999 743 34567888888888776
Q ss_pred --------------------CceEEEccChh--hHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccc
Q 001646 405 --------------------LGVVKHMAAEG--DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRK 462 (1038)
Q Consensus 405 --------------------d~~V~flG~~e--dV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~E 462 (1038)
+ +|.|.|+.. ++.+.|..+.++|.+|..| ||+ +++||++.|+|+| .-|..+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~-~v~f~gy~~e~dl~~~~~~arl~id~s~~e--g~~-~~ieAiS~GiPqI---nyg~~~ 461 (519)
T TIGR03713 389 LSEQDENQPILQTDEEQKEKE-RIAFTTLTNEEDLISALDKLRLIIDLSKEP--DLY-TQISGISAGIPQI---NKVETD 461 (519)
T ss_pred cchhhhhhhcccchhhccccc-EEEEEecCCHHHHHHHHhhheEEEECCCCC--ChH-HHHHHHHcCCCee---ecCCce
Confidence 5 899999886 9999999999999999998 799 9999999999999 456799
Q ss_pred ccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 001646 463 YVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLL 525 (1038)
Q Consensus 463 iV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~Ly 525 (1038)
+|.||+||+++ +|..+|+++|..+|.+ +..+.++...+.+.+++|+.+++.+++.+++
T Consensus 462 ~V~d~~NG~li--~d~~~l~~al~~~L~~---~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 462 YVEHNKNGYII--DDISELLKALDYYLDN---LKNWNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred eeEcCCCcEEe--CCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 99999999999 6999999999999999 9999999999999999999999999998753
No 95
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=1.6e-10 Score=132.50 Aligned_cols=318 Identities=16% Similarity=0.180 Sum_probs=187.6
Q ss_pred EcCCCCCChHHHHHHHHHHHHHHcCCe-EEEEEcCCCcchhhhhhcCceEEEcccc---------------------hhH
Q 001646 150 VFPDLLIDPQQLQMVTIAIALREIGYA-IQVYSLEDGRAHEVWRNIGVPVAILQTG---------------------REK 207 (1038)
Q Consensus 150 V~~~L~iGGae~~v~~LAkaL~k~G~e-V~V~t~~~g~~~~~~e~~gI~v~~l~~~---------------------rkl 207 (1038)
++...+.||.-.-...+++.|.++|++ |.++....+-........++.++.++.. ...
T Consensus 4 vl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~a 83 (357)
T COG0707 4 VLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQA 83 (357)
T ss_pred EEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHHHHHH
Confidence 344445788888999999999999996 5555433332222223334444333221 123
Q ss_pred HHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc
Q 001646 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (1038)
Q Consensus 208 ~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~ 287 (1038)
.++++..+||+|+..+.+.. ....++. ...++|++.+-.+.... ...+......+.+...+ +
T Consensus 84 ~~il~~~kPd~vig~Ggyvs-~P~~~Aa-~~~~iPv~ihEqn~~~G-~ank~~~~~a~~V~~~f------------~--- 145 (357)
T COG0707 84 RKILKKLKPDVVIGTGGYVS-GPVGIAA-KLLGIPVIIHEQNAVPG-LANKILSKFAKKVASAF------------P--- 145 (357)
T ss_pred HHHHHHcCCCEEEecCCccc-cHHHHHH-HhCCCCEEEEecCCCcc-hhHHHhHHhhceeeecc------------c---
Confidence 44577799999999776662 3333332 36679988544431111 11122222111111111 1
Q ss_pred cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 001646 288 LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (1038)
Q Consensus 288 l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~ 367 (1038)
.....++.+++.+. |.|+...... .+. ...+.. ...+.++|+++|+..... .-.+.+.+++..+.+
T Consensus 146 --~~~~~~~~~~~~~t-G~Pvr~~~~~-~~~---~~~~~~--~~~~~~~ilV~GGS~Ga~---~ln~~v~~~~~~l~~-- 211 (357)
T COG0707 146 --KLEAGVKPENVVVT-GIPVRPEFEE-LPA---AEVRKD--GRLDKKTILVTGGSQGAK---ALNDLVPEALAKLAN-- 211 (357)
T ss_pred --cccccCCCCceEEe-cCcccHHhhc-cch---hhhhhh--ccCCCcEEEEECCcchhH---HHHHHHHHHHHHhhh--
Confidence 02223333444333 3466552221 111 111221 122677888888776553 333344444444543
Q ss_pred ccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHH
Q 001646 368 SVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (1038)
Q Consensus 368 p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA 447 (1038)
+ ++++..+|+.. .+.++..-.+++. +.+.++.+++..+|++||++|.=+ + ++++.|+.+
T Consensus 212 -~-------~~v~~~~G~~~---~~~~~~~~~~~~~----~~v~~f~~dm~~~~~~ADLvIsRa---G---a~Ti~E~~a 270 (357)
T COG0707 212 -R-------IQVIHQTGKND---LEELKSAYNELGV----VRVLPFIDDMAALLAAADLVISRA---G---ALTIAELLA 270 (357)
T ss_pred -C-------eEEEEEcCcch---HHHHHHHHhhcCc----EEEeeHHhhHHHHHHhccEEEeCC---c---ccHHHHHHH
Confidence 2 67777777652 1233333332332 888889999999999999999877 3 689999999
Q ss_pred cCCCEEEcCCccc--------ccccccCccEEEEcCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHH
Q 001646 448 FRKPIIAPDLSNI--------RKYVDDRVNGYLFPKEN--IKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALET 517 (1038)
Q Consensus 448 ~GkPVIaTdvgGi--------~EiV~dG~nGlLv~~~D--~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~i 517 (1038)
+|+|+|--+.+.. ...+.+...|.+++..+ ++.+++.|.+++++ ++..++|++++++....-..+.+
T Consensus 271 ~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~---~~~l~~m~~~a~~~~~p~aa~~i 347 (357)
T COG0707 271 LGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSN---PEKLKAMAENAKKLGKPDAAERI 347 (357)
T ss_pred hCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999987665543 23444445577777655 89999999999999 99999999999888765555555
Q ss_pred HHHHHH
Q 001646 518 IEGYAM 523 (1038)
Q Consensus 518 a~~Y~~ 523 (1038)
++....
T Consensus 348 ~~~~~~ 353 (357)
T COG0707 348 ADLLLA 353 (357)
T ss_pred HHHHHH
Confidence 554443
No 96
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.32 E-value=2.9e-10 Score=130.47 Aligned_cols=292 Identities=15% Similarity=0.154 Sum_probs=169.5
Q ss_pred EEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEccc---ch------------------hH
Q 001646 149 LVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT---GR------------------EK 207 (1038)
Q Consensus 149 iV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~---~r------------------kl 207 (1038)
+++...+.||.-.-...+++.|++.||+|.+++...+-........++++..+.. .+ +.
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDA 83 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 3344445889989999999999999999999987664433333344555433321 11 12
Q ss_pred HHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc
Q 001646 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (1038)
Q Consensus 208 ~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~ 287 (1038)
.++++..+||+||.+..+. ++...++. +..++|++++-.+ .......+....+++.++. .|+.
T Consensus 84 ~~i~~~~kPdvvi~~Ggy~-s~p~~~aa-~~~~~p~~i~e~n-~~~g~~nr~~~~~a~~v~~------------~f~~-- 146 (352)
T PRK12446 84 YVRIRKLKPDVIFSKGGFV-SVPVVIGG-WLNRVPVLLHESD-MTPGLANKIALRFASKIFV------------TFEE-- 146 (352)
T ss_pred HHHHHhcCCCEEEecCchh-hHHHHHHH-HHcCCCEEEECCC-CCccHHHHHHHHhhCEEEE------------Eccc--
Confidence 3346778999999987666 23334443 3667898643332 1111122222222222111 1111
Q ss_pred cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccH-HHHHHHHHHchhh
Q 001646 288 LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEH-ALILRALLPLFSE 366 (1038)
Q Consensus 288 l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgl-dlLLeAl~~L~~k 366 (1038)
....++.+++.+ .|.|+.... ....+...+..+++++++++|+.+|+.... +.+ +.+.+++..+..
T Consensus 147 ---~~~~~~~~k~~~-tG~Pvr~~~----~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga----~~in~~~~~~l~~l~~- 213 (352)
T PRK12446 147 ---AAKHLPKEKVIY-TGSPVREEV----LKGNREKGLAFLGFSRKKPVITIMGGSLGA----KKINETVREALPELLL- 213 (352)
T ss_pred ---hhhhCCCCCeEE-ECCcCCccc----ccccchHHHHhcCCCCCCcEEEEECCccch----HHHHHHHHHHHHhhcc-
Confidence 112334445443 345665421 111234556678888888888888866655 344 333444444432
Q ss_pred cccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccCh-hhHHHHHHhcCEEEEcccCCcCCcCHHHHHH
Q 001646 367 VSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKA 445 (1038)
Q Consensus 367 ~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~-edV~~lLaaADIfVlPS~~EeqGFPlvLLEA 445 (1038)
+ ++++++.|... +...+ .. .. .+...++. +++.++|+.||++|.-+ -+.++.|+
T Consensus 214 --~-------~~vv~~~G~~~--~~~~~----~~--~~--~~~~~~f~~~~m~~~~~~adlvIsr~------G~~t~~E~ 268 (352)
T PRK12446 214 --K-------YQIVHLCGKGN--LDDSL----QN--KE--GYRQFEYVHGELPDILAITDFVISRA------GSNAIFEF 268 (352)
T ss_pred --C-------cEEEEEeCCch--HHHHH----hh--cC--CcEEecchhhhHHHHHHhCCEEEECC------ChhHHHHH
Confidence 1 56666555431 11222 21 12 34556887 78999999999998865 26799999
Q ss_pred HHcCCCEEEcCCcc---------cccccccCccEEEEcC--CCHHHHHHHHHHHHHcCCCcHHH
Q 001646 446 LCFRKPIIAPDLSN---------IRKYVDDRVNGYLFPK--ENIKALTHIILQVITNGKISPFA 498 (1038)
Q Consensus 446 MA~GkPVIaTdvgG---------i~EiV~dG~nGlLv~~--~D~eaLAeAI~~LLsDg~l~elr 498 (1038)
+++|+|.|..+... ..+.+.+...|..+.. -+++.+++++..+++| ++.+
T Consensus 269 ~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~---~~~~ 329 (352)
T PRK12446 269 LTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHN---NEKY 329 (352)
T ss_pred HHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcC---HHHH
Confidence 99999999876531 1123444344555543 3588999999999988 6554
No 97
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.13 E-value=2.2e-10 Score=105.59 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=83.3
Q ss_pred EEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 001646 426 VVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIG 505 (1038)
Q Consensus 426 IfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~a 505 (1038)
|++.|+... |++..++|+||||+|||+++.++..+++.+|..+++++ |+++++++|..+++| ++++++++++|
T Consensus 1 i~Ln~~~~~--~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~~~el~~~i~~ll~~---~~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSD--GPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--DPEELAEKIEYLLEN---PEERRRIAKNA 73 (92)
T ss_pred CEeeCCCCC--CCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--CHHHHHHHHHHHHCC---HHHHHHHHHHH
Confidence 467788776 79999999999999999999999999999998899987 999999999999999 99999999999
Q ss_pred HHHH-HhhCHHHHHHHHH
Q 001646 506 RRSV-KNLMALETIEGYA 522 (1038)
Q Consensus 506 re~a-k~Fs~e~ia~~Y~ 522 (1038)
++.+ ++|+++..++++.
T Consensus 74 ~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 9999 5799999998875
No 98
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.08 E-value=9.3e-09 Score=122.18 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=78.3
Q ss_pred hHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccccc-----CccEEEE-cC--CC----HHHHHH
Q 001646 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD-----RVNGYLF-PK--EN----IKALTH 483 (1038)
Q Consensus 416 dV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~d-----G~nGlLv-~~--~D----~eaLAe 483 (1038)
+..+++..||+.|+||++|+ ||.+.+|+.++|+|.|+|+..|....+.+ ...|+.+ +- .+ +++|++
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEP--WGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~ 539 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEP--WGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLAD 539 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBS--S-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHH
T ss_pred CHHHHhccCceeeecccccc--ccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 56889999999999999995 99999999999999999999987644432 3345544 32 23 455666
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 001646 484 IILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 484 AI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
.|..+.... ...+..+..++.+.++.++|+++...|.+.++-+|+
T Consensus 540 ~l~~f~~~~--~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~ 584 (633)
T PF05693_consen 540 FLYKFCQLS--RRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLALR 584 (633)
T ss_dssp HHHHHHT----HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHhCC--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 666666540 334446777888888889999999999999987765
No 99
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.00 E-value=2.2e-08 Score=118.05 Aligned_cols=213 Identities=8% Similarity=0.014 Sum_probs=155.7
Q ss_pred EEEcCCCCCCccccccccchh----hHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCC
Q 001646 300 YYVIPGSPAKAWEADTNMDLY----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNS 375 (1038)
Q Consensus 300 i~VIPgsgVD~~~f~~~~~~~----k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~ 375 (1038)
+.+.| .|||...+....... -..+++.++ +..+|+.+. |+.+- ||+..=++|+..+.+++|+ -..
T Consensus 221 v~~~P-igID~~~~~~~a~~~~~~~~~~lr~~~~---~~~lilgVD-RLDyt---KGi~~rl~Afe~fL~~~Pe---~~g 289 (474)
T PRK10117 221 TEVYP-IGIEPDEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVE-RLDYS---KGLPERFLAYEALLEKYPQ---HHG 289 (474)
T ss_pred EEEEE-CeEcHHHHHHHhhchHHHHHHHHHHHcC---CCeEEEEec-ccccc---cCHHHHHHHHHHHHHhChh---hcC
Confidence 34444 678876554332211 234555554 466888888 99998 7777779999999999987 556
Q ss_pred CEEEEEEeCCCC------CchHHHHHHHHHHcCCCCc-----eEEEccC---hhhHHHHHHhcCEEEEcccCCcCCcCHH
Q 001646 376 PIKVMILSGDST------SNYSVVIEAIAHNLHYPLG-----VVKHMAA---EGDVDSVLNTADVVIYGSFLEEQTFPEI 441 (1038)
Q Consensus 376 ~vkLVIVGG~~~------e~Y~~~LeeLa~qLgL~d~-----~V~flG~---~edV~~lLaaADIfVlPS~~EeqGFPlv 441 (1038)
++.|+-+.-+.. ..+..++++++.+.+-.-+ -|.++.. .+++..+|..|||++.+|..+ |+.++
T Consensus 290 kvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRD--GMNLV 367 (474)
T PRK10117 290 KIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRD--GMNLV 367 (474)
T ss_pred CEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEeccccc--ccccc
Confidence 688887773332 1345566666654322111 1555432 278899999999999999999 89999
Q ss_pred HHHHHHcCC-----CEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHhhCHH
Q 001646 442 LVKALCFRK-----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPF-ARNIASIGRRSVKNLMAL 515 (1038)
Q Consensus 442 LLEAMA~Gk-----PVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~el-r~~mg~~are~ak~Fs~e 515 (1038)
..|+.||-. ++|.|...|..+.+.+ .++++|.|++++|++|.+.++. +.. +++--+..++.+..++..
T Consensus 368 AkEyva~q~~~~~GvLILSefAGaA~~L~~---AllVNP~d~~~~A~Ai~~AL~M---p~~Er~~R~~~l~~~v~~~dv~ 441 (474)
T PRK10117 368 AKEYVAAQDPANPGVLVLSQFAGAANELTS---ALIVNPYDRDEVAAALDRALTM---PLAERISRHAEMLDVIVKNDIN 441 (474)
T ss_pred cchheeeecCCCCccEEEecccchHHHhCC---CeEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhCCHH
Confidence 999999975 3788999999988853 7999999999999999999997 543 344555667777889999
Q ss_pred HHHHHHHHHHHHhhcC
Q 001646 516 ETIEGYAMLLENVLKL 531 (1038)
Q Consensus 516 ~ia~~Y~~Lye~vLk~ 531 (1038)
..++.+.+-+..+...
T Consensus 442 ~W~~~fL~~L~~~~~~ 457 (474)
T PRK10117 442 HWQECFISDLKQIVPR 457 (474)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999888776443
No 100
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.98 E-value=3.3e-08 Score=117.44 Aligned_cols=288 Identities=13% Similarity=0.105 Sum_probs=159.3
Q ss_pred cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHh-HHHhhhhchhHHHHHHHHHHHhcceEeccCCc-----
Q 001646 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR-ARNYASSGQLELLNDWKKVFNRATVVVFPDYV----- 287 (1038)
Q Consensus 214 ~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~-lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~----- 287 (1038)
..-|+|.+|..... .+..++.++.++.++.+..|- ++... +-+.+. ....++. ..-.++.+.|....
T Consensus 140 ~~~D~VWVhDYhL~-llP~~LR~~~~~~~IgfFlHi-PFPs~e~fr~lP-~r~eiL~----glL~aDlIgFqt~~~~~nF 212 (474)
T PF00982_consen 140 RPGDLVWVHDYHLM-LLPQMLRERGPDARIGFFLHI-PFPSSEIFRCLP-WREEILR----GLLGADLIGFQTFEYARNF 212 (474)
T ss_dssp -TT-EEEEESGGGT-THHHHHHHTT--SEEEEEE-S-----HHHHTTST-THHHHHH----HHTTSSEEEESSHHHHHHH
T ss_pred cCCCEEEEeCCcHH-HHHHHHHhhcCCceEeeEEec-CCCCHHHHhhCC-cHHHHHH----HhhcCCEEEEecHHHHHHH
Confidence 36789999998884 677777677788899999996 11100 000000 0000000 01112222221111
Q ss_pred ----------------cccccccCCCCCEEEcCCCCCCccccccccchh-----hHHHHHhhCCCCCCEEEEEEeccccc
Q 001646 288 ----------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMY 346 (1038)
Q Consensus 288 ----------------l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~-----k~~lReklgi~~d~~vIL~VGsrl~~ 346 (1038)
-.+.+++- .-.+.+.| .|+|...+....... ...++++++ .+..+|+.+. ++.+
T Consensus 213 l~~~~r~lg~~~~~~~~~v~~~Gr-~v~v~~~p-igId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~~ii~gvD-rld~ 287 (474)
T PF00982_consen 213 LSCCKRLLGLEVDSDRGTVEYNGR-RVRVGVFP-IGIDPDAFAQLARSPEVQERAEELREKFK--GKRKIIVGVD-RLDY 287 (474)
T ss_dssp HHHHHHHS-EEEEETTE-EEETTE-EEEEEE-------HHHHHHHHH-S---HHHHHHHHHTT--T-SEEEEEE---B-G
T ss_pred HHHHHHHcCCcccCCCceEEECCE-EEEEEEee-ccCChHHHHhhccChHHHHHHHHHHHhcC--CCcEEEEEec-cchh
Confidence 01111110 01234444 688875544322211 234556554 2347899998 9999
Q ss_pred ccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCC---CC---chHHHHHHHHHH----cCCCC-ceEEEc-cCh
Q 001646 347 RGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDS---TS---NYSVVIEAIAHN----LHYPL-GVVKHM-AAE 414 (1038)
Q Consensus 347 ~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~---~e---~Y~~~LeeLa~q----LgL~d-~~V~fl-G~~ 414 (1038)
. ||+..=++|+..+.+++|+ -..++.|+-++-+. .. .+..++++++.+ +|-.+ .-|.++ +..
T Consensus 288 ~---kGi~~kl~Afe~fL~~~P~---~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~ 361 (474)
T PF00982_consen 288 T---KGIPEKLRAFERFLERYPE---YRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSL 361 (474)
T ss_dssp G---G-HHHHHHHHHHHHHH-GG---GTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S--
T ss_pred h---cCHHHHHHHHHHHHHhCcC---ccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCC
Confidence 8 8888889999999999997 55678888888222 11 244555555543 33221 014444 323
Q ss_pred --hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCC----EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHH
Q 001646 415 --GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQV 488 (1038)
Q Consensus 415 --edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkP----VIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~L 488 (1038)
+++..+|+.|||++.+|..+ |+.++..|+.+|..+ +|.|...|..+.+.+ ..++++|.|++++|++|.+.
T Consensus 362 ~~~~~~aly~~aDv~lvTslrD--GmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~--~al~VNP~d~~~~A~ai~~A 437 (474)
T PF00982_consen 362 SFEELLALYRAADVALVTSLRD--GMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE--AALLVNPWDIEEVADAIHEA 437 (474)
T ss_dssp -HHHHHHHHHH-SEEEE--SSB--S--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT--S-EEE-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhEEecchhh--ccCCcceEEEEEecCCCCceEeeccCCHHHHcCC--ccEEECCCChHHHHHHHHHH
Confidence 88999999999999999999 899999999999775 788999999998876 34899999999999999999
Q ss_pred HHcCCCcH-HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 001646 489 ITNGKISP-FARNIASIGRRSVKNLMALETIEGYAMLLE 526 (1038)
Q Consensus 489 LsDg~l~e-lr~~mg~~are~ak~Fs~e~ia~~Y~~Lye 526 (1038)
++. +. +++..-+..++.+..++....++.+.+-++
T Consensus 438 L~M---~~~Er~~r~~~~~~~v~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 438 LTM---PPEERKERHARLREYVREHDVQWWAESFLRDLK 473 (474)
T ss_dssp HT-----HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHHHHhHhCCHHHHHHHHHHHhh
Confidence 997 44 444555667778888999988888876554
No 101
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.93 E-value=2.9e-08 Score=121.01 Aligned_cols=183 Identities=14% Similarity=0.100 Sum_probs=138.5
Q ss_pred CCCCCEEEEEEecccccccccccHHHHHHHHHHchh--hcccCCCCCCCEEEEEEe-CCCC----CchHHHHHHHHHHcC
Q 001646 330 FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS--EVSVENESNSPIKVMILS-GDST----SNYSVVIEAIAHNLH 402 (1038)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~--k~p~~~~~~~~vkLVIVG-G~~~----e~Y~~~LeeLa~qLg 402 (1038)
+.++.+++++++ |+... |+++++++++..+.+ ..|. .+++|+++| |... ..+.+.+.+++++..
T Consensus 385 ~dpd~~~ig~v~-Rl~~y---Kr~dLil~~i~~l~~i~~~~~-----~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~ 455 (601)
T TIGR02094 385 LDPDVLTIGFAR-RFATY---KRADLIFRDLERLARILNNPE-----RPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPE 455 (601)
T ss_pred cCCCCcEEEEEE-cchhh---hhHHHHHHHHHHHHHHhhCCC-----CCeEEEEEEecCcccchHHHHHHHHHHHHhccc
Confidence 456777888888 77766 999999999888864 2211 348999999 6554 335566677777545
Q ss_pred CCCceEEE-ccChhhH-HHHHHhcCEEEE-ccc-CCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcC---
Q 001646 403 YPLGVVKH-MAAEGDV-DSVLNTADVVIY-GSF-LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK--- 475 (1038)
Q Consensus 403 L~d~~V~f-lG~~edV-~~lLaaADIfVl-PS~-~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~--- 475 (1038)
.++ +|.| .++...+ ..++++||++++ ||. +|. .|++=|-||..|.+.+++--|...|.. ++.||+.+..
T Consensus 456 ~~~-kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~Ea--cGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~ 531 (601)
T TIGR02094 456 FRG-RIVFLENYDINLARYLVSGVDVWLNNPRRPLEA--SGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEE 531 (601)
T ss_pred CCC-CEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCC--chHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCcc
Confidence 666 5555 5676555 457999999999 998 884 899999999999999999888888876 5679999984
Q ss_pred ---------CCHHHHHHHHHHHH-----HcCC--CcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH
Q 001646 476 ---------ENIKALTHIILQVI-----TNGK--ISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (1038)
Q Consensus 476 ---------~D~eaLAeAI~~LL-----sDg~--l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Ly 525 (1038)
.|+++|.++|.+.+ +++. +|..+.+|.++|.... ..|+|.++++.|.++|
T Consensus 532 ~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 532 YDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 78999999997655 2211 1345677777766654 5799999999999876
No 102
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.92 E-value=1.2e-08 Score=120.23 Aligned_cols=123 Identities=9% Similarity=0.130 Sum_probs=105.8
Q ss_pred HHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCC-CCchHHHHHHHHHHcCCCCceEEEccChh-hHHHHHHhcCEEEEc
Q 001646 354 ALILRALLPLFSEVSVENESNSPIKVMILS-GDS-TSNYSVVIEAIAHNLHYPLGVVKHMAAEG-DVDSVLNTADVVIYG 430 (1038)
Q Consensus 354 dlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~-~e~Y~~~LeeLa~qLgL~d~~V~flG~~e-dV~~lLaaADIfVlP 430 (1038)
+..|+++..|.++.|+ ++|.| | +.. . ..|.++ +++ ++ .+.+.|+.. ++.++|..||+++..
T Consensus 291 s~~I~~i~~Lv~~lPd-------~~f~I-ga~te~s----~kL~~L-~~y--~n-vvly~~~~~~~l~~ly~~~dlyLdi 354 (438)
T TIGR02919 291 SDQIEHLEEIVQALPD-------YHFHI-AALTEMS----SKLMSL-DKY--DN-VKLYPNITTQKIQELYQTCDIYLDI 354 (438)
T ss_pred HHHHHHHHHHHHhCCC-------cEEEE-EecCccc----HHHHHH-Hhc--CC-cEEECCcChHHHHHHHHhccEEEEc
Confidence 4459999999999999 99999 7 544 3 788888 655 66 788888775 999999999999999
Q ss_pred ccCCcCCcCHHHHHHHHcCCCEEEcCCc-ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHH
Q 001646 431 SFLEEQTFPEILVKALCFRKPIIAPDLS-NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARN 500 (1038)
Q Consensus 431 S~~EeqGFPlvLLEAMA~GkPVIaTdvg-Gi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~ 500 (1038)
|..| ||+++++||++.|+|||+.+.. |..+++.+ |.+++.+++++|+++|..++++ ++..+.
T Consensus 355 n~~e--~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d---~~~~~~ 417 (438)
T TIGR02919 355 NHGN--EILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLND---PNQFRE 417 (438)
T ss_pred cccc--cHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcC---HHHHHH
Confidence 9998 7999999999999999998865 55577766 8899999999999999999999 766554
No 103
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=9.4e-07 Score=101.63 Aligned_cols=319 Identities=15% Similarity=0.127 Sum_probs=187.1
Q ss_pred hHHHHHHHHHHHHHHc--CCeEEEEEcCCCcchhhhhhcC--ceEEEcccc--hhHHHHhhhcCCcEEEEcCCchhHHHH
Q 001646 158 PQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRNIG--VPVAILQTG--REKASFVNWLNYDGILVNSLEAKVVIS 231 (1038)
Q Consensus 158 Gae~~v~~LAkaL~k~--G~eV~V~t~~~g~~~~~~e~~g--I~v~~l~~~--rkl~~lI~~~kpDIVhvhs~~~~~~la 231 (1038)
|-...+..+.+.|.+. +..+.+-+..+......-+.++ +.+..++.. ....++++..+||++++-....-+.+.
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli 139 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLI 139 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHH
Confidence 5566788888999888 6666666655433222222222 344444443 345677888999998876554422222
Q ss_pred HHHhCCCCCCCEEEEEeCchhHHh-HHHhhhhchhHHHHHHHHHHHhcceEeccCCccccccccCCCCCEEEcCCCCCCc
Q 001646 232 NIMQEPFKSLPLVWTIHEGTLATR-ARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKA 310 (1038)
Q Consensus 232 ~La~~~~~gIPvI~tiHg~~L~~~-lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~viyn~vd~~ki~VIPgsgVD~ 310 (1038)
.-+ +..++|++.. .+ .+..+ ...| ..+-...+..+...+.+..++....--...+...++.+.-|.-.|.
T Consensus 140 ~e~--~~~~~p~~Lv-Na-RLS~rS~~~y-----~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd~ 210 (419)
T COG1519 140 NEL--KRRGIPLVLV-NA-RLSDRSFARY-----AKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLKFDI 210 (419)
T ss_pred HHH--HHcCCCEEEE-ee-eechhhhHHH-----HHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCcceEEecceeecC
Confidence 222 3567886642 22 11111 1111 1111122233444444444433311111111122222222222222
Q ss_pred cccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCc
Q 001646 311 WEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSN 389 (1038)
Q Consensus 311 ~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~ 389 (1038)
.. .+........+|..++.+ +++++..+. .+ .+-+.+++++..|++++|+ ..+++|= -+.+
T Consensus 211 ~~-~~~~~~~~~~~r~~l~~~--r~v~iaaST--H~----GEeei~l~~~~~l~~~~~~-------~llIlVPRHpER-- 272 (419)
T COG1519 211 EP-PPQLAAELAALRRQLGGH--RPVWVAAST--HE----GEEEIILDAHQALKKQFPN-------LLLILVPRHPER-- 272 (419)
T ss_pred CC-ChhhHHHHHHHHHhcCCC--CceEEEecC--CC----chHHHHHHHHHHHHhhCCC-------ceEEEecCChhh--
Confidence 10 111112245567776654 456666663 33 3566789999999999998 7888877 4443
Q ss_pred hHHHHHHHHHHcCCCC------------ceEEEccChhhHHHHHHhcCEEEEc-ccCCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 390 YSVVIEAIAHNLHYPL------------GVVKHMAAEGDVDSVLNTADVVIYG-SFLEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 390 Y~~~LeeLa~qLgL~d------------~~V~flG~~edV~~lLaaADIfVlP-S~~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
.+.+++++++.|+.- -.|.+.....++..+|..||+.+.. |..+. -|--++|+.++|+|||+-+
T Consensus 273 -f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~--GGHN~LEpa~~~~pvi~Gp 349 (419)
T COG1519 273 -FKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPI--GGHNPLEPAAFGTPVIFGP 349 (419)
T ss_pred -HHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCC--CCCChhhHHHcCCCEEeCC
Confidence 367888888877652 0233333346889999999997765 55542 3788999999999999843
Q ss_pred ----CcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 001646 457 ----LSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKN 511 (1038)
Q Consensus 457 ----vgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~ 511 (1038)
...+.+-+.....|+.++ |.+.+++++..++.| ++.+++|+++|...+++
T Consensus 350 ~~~Nf~ei~~~l~~~ga~~~v~--~~~~l~~~v~~l~~~---~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 350 YTFNFSDIAERLLQAGAGLQVE--DADLLAKAVELLLAD---EDKREAYGRAGLEFLAQ 403 (419)
T ss_pred ccccHHHHHHHHHhcCCeEEEC--CHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHH
Confidence 334444455555577776 589999999999999 89999999999998854
No 104
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.82 E-value=4.3e-07 Score=106.09 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=110.0
Q ss_pred CCCCCC-EEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCC-
Q 001646 329 GFKPDD-LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPL- 405 (1038)
Q Consensus 329 gi~~d~-~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d- 405 (1038)
++.++. .+++..|+|...- ..++..+++|+..+.++ ++ +.+++.- |... .+.+++...+.++..
T Consensus 200 ~l~~~~~~lllLpGSR~ae~--~~~lp~~l~al~~L~~~-~~-------~~~v~~~~~~~~---~~~~~~~l~~~g~~~~ 266 (396)
T TIGR03492 200 PLLTGRFRIALLPGSRPPEA--YRNLKLLLRALEALPDS-QP-------FVFLAAIVPSLS---LEKLQAILEDLGWQLE 266 (396)
T ss_pred ccCCCCCEEEEECCCCHHHH--HccHHHHHHHHHHHhhC-CC-------eEEEEEeCCCCC---HHHHHHHHHhcCceec
Confidence 444443 4555556553332 26778999999999755 45 7776654 3321 155666565555431
Q ss_pred ------------ceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccc---ccccc----
Q 001646 406 ------------GVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR---KYVDD---- 466 (1038)
Q Consensus 406 ------------~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~---EiV~d---- 466 (1038)
+.+.+..+..++..+|+.||++|..| | .+..|++++|+|+|..+.++.. .+...
T Consensus 267 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS-----G--t~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l 339 (396)
T TIGR03492 267 GSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA-----G--TATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRL 339 (396)
T ss_pred CCccccchhhccCceEEEechHhHHHHHHhCCEEEECc-----C--HHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhh
Confidence 13666677789999999999999998 2 3449999999999998754331 22222
Q ss_pred -CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHH
Q 001646 467 -RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGY 521 (1038)
Q Consensus 467 -G~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y 521 (1038)
| .+..+...+++.+++++..+++| ++.+++|.+++++.. +....+.+++..
T Consensus 340 ~g-~~~~l~~~~~~~l~~~l~~ll~d---~~~~~~~~~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 340 LG-GSVFLASKNPEQAAQVVRQLLAD---PELLERCRRNGQERMGPPGASARIAESI 392 (396)
T ss_pred cC-CEEecCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3 34445556789999999999999 888888875444433 334444455443
No 105
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.72 E-value=4e-07 Score=115.01 Aligned_cols=295 Identities=10% Similarity=0.082 Sum_probs=184.4
Q ss_pred cEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCc----hhHHh-------HHHhhhhchhH-HHHHHHHHH-HhcceEec
Q 001646 217 DGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATR-------ARNYASSGQLE-LLNDWKKVF-NRATVVVF 283 (1038)
Q Consensus 217 DIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~----~L~~~-------lek~~~~~~d~-lIs~~~~~~-~~a~~vvf 283 (1038)
|+|.+|.... .++..++.++.+..++.+..|-. .++.. ++..+..-... ....+...| ..|..+.-
T Consensus 203 d~VWVhDYhL-~llP~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~lg 281 (854)
T PLN02205 203 DFVWIHDYHL-MVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLG 281 (854)
T ss_pred CEEEEeCchh-hHHHHHHHhhCCCCcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEecCHHHHHHHHHHHHHHhC
Confidence 8999999988 47777776777888999999971 11110 11111000000 000111111 11111000
Q ss_pred cCCc-----cccccccCCCCCEEEcCCCCCCccccccccchh-----hHHHHHhhCCCCCCEEEEEEecccccccccccH
Q 001646 284 PDYV-----LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEH 353 (1038)
Q Consensus 284 ps~~-----l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~-----k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgl 353 (1038)
.... ..+.|.+ ..-.+.+.| .|||...+....... -.+++++++- +++.+|+.|. ++.+- ||+
T Consensus 282 l~~~~~~g~~~~~~~G-r~v~v~~~P-igId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ilgVD-rlD~~---KGi 354 (854)
T PLN02205 282 LSYESKRGYIGLEYYG-RTVSIKILP-VGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDRIMLLGVD-DMDIF---KGI 354 (854)
T ss_pred CcccCCCcceeEEECC-cEEEEEEEe-CeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEEEcc-Ccccc---cCH
Confidence 0000 0011111 011233444 688876554332211 2344555432 3567889998 99998 777
Q ss_pred HHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCC------CchHHHHHHHHHH----cCCCC-ceEEEcc-C--hhhHHH
Q 001646 354 ALILRALLPLFSEVSVENESNSPIKVMILSGDST------SNYSVVIEAIAHN----LHYPL-GVVKHMA-A--EGDVDS 419 (1038)
Q Consensus 354 dlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~------e~Y~~~LeeLa~q----LgL~d-~~V~flG-~--~edV~~ 419 (1038)
..=+.|+..+.+++|+ -..++.|+-+.-+.+ ..+...+++++.+ +|-.+ .-|.++. . .+++..
T Consensus 355 ~~kl~A~e~~L~~~P~---~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~a 431 (854)
T PLN02205 355 SLKLLAMEQLLMQHPE---WQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVA 431 (854)
T ss_pred HHHHHHHHHHHHhCcc---ccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHH
Confidence 7779999999999997 455678887773332 2344455555554 22211 0255553 2 288999
Q ss_pred HHHhcCEEEEcccCCcCCcCHHHHHHHHcCC-------------------CEEEcCCcccccccccCccEEEEcCCCHHH
Q 001646 420 VLNTADVVIYGSFLEEQTFPEILVKALCFRK-------------------PIIAPDLSNIRKYVDDRVNGYLFPKENIKA 480 (1038)
Q Consensus 420 lLaaADIfVlPS~~EeqGFPlvLLEAMA~Gk-------------------PVIaTdvgGi~EiV~dG~nGlLv~~~D~ea 480 (1038)
+|+.|||++.+|..+ |+.++..|+.+|.. .+|.|...|....+. ..++++|.|+++
T Consensus 432 ly~~ADv~lVT~lRD--GMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~---~Ai~VNP~d~~~ 506 (854)
T PLN02205 432 YYVVAECCLVTAVRD--GMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS---GAIRVNPWNIDA 506 (854)
T ss_pred HHHhccEEEeccccc--cccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC---cCeEECCCCHHH
Confidence 999999999999999 89999999999864 377888888887774 279999999999
Q ss_pred HHHHHHHHHHcCCCcHHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 001646 481 LTHIILQVITNGKISPFA-RNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 481 LAeAI~~LLsDg~l~elr-~~mg~~are~ak~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
+|++|.+.+.. +... +.--+..++++..++....++.+..-++.+.+
T Consensus 507 ~a~ai~~AL~m---~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~~~ 554 (854)
T PLN02205 507 VADAMDSALEM---AEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCR 554 (854)
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 99999999997 5433 34445667777889999999988887776643
No 106
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=9.6e-07 Score=104.18 Aligned_cols=294 Identities=11% Similarity=0.095 Sum_probs=181.8
Q ss_pred CCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCc----hhHHh-------HHHhhhhchhH-HHHHHHHHH-HhcceE
Q 001646 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATR-------ARNYASSGQLE-LLNDWKKVF-NRATVV 281 (1038)
Q Consensus 215 kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~----~L~~~-------lek~~~~~~d~-lIs~~~~~~-~~a~~v 281 (1038)
.=|+|.+|..... ++..++..+....++.+.+|-. .++.. ++..+...... -...+...| ..+...
T Consensus 147 ~gDiIWVhDYhL~-L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP~r~eIl~gll~~dligFqt~~y~~nF~~~~~r~ 225 (486)
T COG0380 147 PGDIIWVHDYHLL-LVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLPWREEILEGLLGADLIGFQTESYARNFLDLCSRL 225 (486)
T ss_pred CCCEEEEEechhh-hhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCchHHHHHHHhhcCCeeEecCHHHHHHHHHHHHHh
Confidence 4499999998883 6666666666777899999961 11111 11111000000 000111111 111110
Q ss_pred eccCCccccccccCCC--CCEEEcCCCCCCccccccccchh-----hHHHHHhhCCCCCCEEEEEEecccccccccccHH
Q 001646 282 VFPDYVLPMMYSAFDA--GNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHA 354 (1038)
Q Consensus 282 vfps~~l~viyn~vd~--~ki~VIPgsgVD~~~f~~~~~~~-----k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgld 354 (1038)
.-.....-..+++.+. .++..+| .|+|...+....... -.++++.++ .+..+|+.+- |+.+- ||+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~v~v~a~P-IgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvD-RlDy~---kGi~ 298 (486)
T COG0380 226 LGVTGDADIRFNGADGRIVKVGAFP-IGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVD-RLDYS---KGIP 298 (486)
T ss_pred ccccccccccccccCCceEEEEEEe-eecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEeh-hcccc---cCcH
Confidence 0000000011111111 2234445 788876655444322 223333332 3367888888 99998 6666
Q ss_pred HHHHHHHHchhhcccCCCCCCCEEEEEEeCCCC---Cc---hHHHHHHHHHHc----CCCC-ceEEEccC---hhhHHHH
Q 001646 355 LILRALLPLFSEVSVENESNSPIKVMILSGDST---SN---YSVVIEAIAHNL----HYPL-GVVKHMAA---EGDVDSV 420 (1038)
Q Consensus 355 lLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~---e~---Y~~~LeeLa~qL----gL~d-~~V~flG~---~edV~~l 420 (1038)
.=+.|+.++..++|+ -+.++.|+-++.+.. .. +...+++++.+. |-.+ .-|.|+-. .+++..+
T Consensus 299 ~rl~Afe~lL~~~Pe---~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al 375 (486)
T COG0380 299 QRLLAFERLLEEYPE---WRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLAL 375 (486)
T ss_pred HHHHHHHHHHHhChh---hhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHH
Confidence 669999999999987 566788888883332 22 344555555432 2111 02455442 2788999
Q ss_pred HHhcCEEEEcccCCcCCcCHHHHHHHHcC----CCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcH
Q 001646 421 LNTADVVIYGSFLEEQTFPEILVKALCFR----KPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISP 496 (1038)
Q Consensus 421 LaaADIfVlPS~~EeqGFPlvLLEAMA~G----kPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~e 496 (1038)
|..||+++.+|..+ |+.++..|+.||- -|.|-|...|....+.+ .++++|.|.+++|++|.+.++. +.
T Consensus 376 ~~~aDv~lVtplrD--GMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d~~~va~ai~~AL~m---~~ 447 (486)
T COG0380 376 YRAADVMLVTPLRD--GMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWDTKEVADAIKRALTM---SL 447 (486)
T ss_pred Hhhhceeeeccccc--cccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCChHHHHHHHHHHhcC---CH
Confidence 99999999999999 8999999999984 37888999998888876 7999999999999999999997 54
Q ss_pred HHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 001646 497 FAR-NIASIGRRSVKNLMALETIEGYAMLLEN 527 (1038)
Q Consensus 497 lr~-~mg~~are~ak~Fs~e~ia~~Y~~Lye~ 527 (1038)
..+ +--+..++.+..++....++.+..-+..
T Consensus 448 eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 448 EERKERHEKLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 433 4444556667778888888887766654
No 107
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.71 E-value=2.1e-06 Score=95.66 Aligned_cols=248 Identities=15% Similarity=0.112 Sum_probs=134.9
Q ss_pred CCCCC-hHHHHHHHHHHHHHHcCCeEEEEEcCCCcc-hhhhhhcCceEEEcccch-------hHHHHhhhcCCcEEEEcC
Q 001646 153 DLLID-PQQLQMVTIAIALREIGYAIQVYSLEDGRA-HEVWRNIGVPVAILQTGR-------EKASFVNWLNYDGILVNS 223 (1038)
Q Consensus 153 ~L~iG-Gae~~v~~LAkaL~k~G~eV~V~t~~~g~~-~~~~e~~gI~v~~l~~~r-------kl~~lI~~~kpDIVhvhs 223 (1038)
+..+| |.-.....||+.|++.|++|.+++...... .......+.++..++... .+...++..+||+|++.+
T Consensus 9 ~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 9 SSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDH 88 (279)
T ss_pred CccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcC
Confidence 33444 556679999999999999999999876443 345567777777665432 355667778999999988
Q ss_pred CchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc-ccccccc-CCCCCEE
Q 001646 224 LEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-LPMMYSA-FDAGNYY 301 (1038)
Q Consensus 224 ~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~-l~viyn~-vd~~ki~ 301 (1038)
............ ..+.+++ .+.+...... .++.++-++.. ....|.. ++... .
T Consensus 89 y~~~~~~~~~~k--~~~~~l~-~iDD~~~~~~---------------------~~D~vin~~~~~~~~~y~~~~~~~~-~ 143 (279)
T TIGR03590 89 YGLDADWEKLIK--EFGRKIL-VIDDLADRPH---------------------DCDLLLDQNLGADASDYQGLVPANC-R 143 (279)
T ss_pred CCCCHHHHHHHH--HhCCeEE-EEecCCCCCc---------------------CCCEEEeCCCCcCHhHhcccCcCCC-e
Confidence 754323222221 1233433 3332100000 11211111111 0111222 12121 2
Q ss_pred EcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEE-
Q 001646 302 VIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVM- 380 (1038)
Q Consensus 302 VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLV- 380 (1038)
+.-|. +. -+..+.............+...+++++|+.-.. +....+++++..+.. + +++.
T Consensus 144 ~l~G~--~Y---~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~----~~~~~~l~~l~~~~~---~-------~~i~v 204 (279)
T TIGR03590 144 LLLGP--SY---ALLREEFYQLATANKRRKPLRRVLVSFGGADPD----NLTLKLLSALAESQI---N-------ISITL 204 (279)
T ss_pred EEecc--hH---HhhhHHHHHhhHhhhcccccCeEEEEeCCcCCc----CHHHHHHHHHhcccc---C-------ceEEE
Confidence 22221 10 011111100000000001224467777744333 334556777766432 2 3444
Q ss_pred EEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCC
Q 001646 381 ILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (1038)
Q Consensus 381 IVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdv 457 (1038)
|+| +... ..+.+++.++.. + +|.++++.+++.++|+.||++|.++ |.++.|++++|+|+|+...
T Consensus 205 v~G-~~~~-~~~~l~~~~~~~--~--~i~~~~~~~~m~~lm~~aDl~Is~~-------G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 205 VTG-SSNP-NLDELKKFAKEY--P--NIILFIDVENMAELMNEADLAIGAA-------GSTSWERCCLGLPSLAICL 268 (279)
T ss_pred EEC-CCCc-CHHHHHHHHHhC--C--CEEEEeCHHHHHHHHHHCCEEEECC-------chHHHHHHHcCCCEEEEEe
Confidence 455 3221 136677777642 2 5899999999999999999999953 4799999999999998655
No 108
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.8e-06 Score=100.20 Aligned_cols=333 Identities=10% Similarity=0.062 Sum_probs=204.8
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc--hhhhhhcC-ceEEEcc--cchhHHHHhhhcCC
Q 001646 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA--HEVWRNIG-VPVAILQ--TGREKASFVNWLNY 216 (1038)
Q Consensus 142 ~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~--~~~~e~~g-I~v~~l~--~~rkl~~lI~~~kp 216 (1038)
.+++||.++.+++..-.....+..+.+.+.+-.+||..+..+.... ...+-... -++..+. ....+..-|.....
T Consensus 257 ~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d~I 336 (620)
T COG3914 257 GKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGI 336 (620)
T ss_pred ccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhcCC
Confidence 3568999999999998888888999999988889999988773221 11111111 1122222 12344555777788
Q ss_pred cEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccccccccCC
Q 001646 217 DGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFD 296 (1038)
Q Consensus 217 DIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~viyn~vd 296 (1038)
||.+.-+.........++. .+-.|+.+++-|.+-. ..+...+. -.++.+++|.......
T Consensus 337 dILvDl~g~T~d~r~~v~A--~RpAPiqvswlGy~aT-----~g~p~~DY---------~I~D~y~vPp~ae~yy----- 395 (620)
T COG3914 337 DILVDLDGHTVDTRCQVFA--HRPAPIQVSWLGYPAT-----TGSPNMDY---------FISDPYTVPPTAEEYY----- 395 (620)
T ss_pred eEEEeccCceeccchhhhh--cCCCceEEeecccccc-----cCCCcceE---------EeeCceecCchHHHHH-----
Confidence 8876543332112222232 2335888877762111 00000011 1122222221110000
Q ss_pred CCCEEEcC--CCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCC
Q 001646 297 AGNYYVIP--GSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (1038)
Q Consensus 297 ~~ki~VIP--gsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~ 374 (1038)
.+++.-+| ..|+|- +....+. -.|.++|++++.++++++++. .|-...+++-..++.+..|+
T Consensus 396 sEkl~RLp~cy~p~d~--~~~v~p~---~sR~~lglp~~avVf~c~~n~------~K~~pev~~~wmqIL~~vP~----- 459 (620)
T COG3914 396 SEKLWRLPQCYQPVDG--FEPVTPP---PSRAQLGLPEDAVVFCCFNNY------FKITPEVFALWMQILSAVPN----- 459 (620)
T ss_pred HHHHHhcccccCCCCC--cccCCCC---cchhhcCCCCCeEEEEecCCc------ccCCHHHHHHHHHHHHhCCC-----
Confidence 00111111 011111 1111111 126789999998777777622 26666778888889888888
Q ss_pred CCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCE
Q 001646 375 SPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPI 452 (1038)
Q Consensus 375 ~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPV 452 (1038)
-.|++.||...+.....+++++++.|+...++.|.+.. ++..+.|.-||+|+=+.-+- -..+.+||+-+|+||
T Consensus 460 --Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~---g~TTa~daLwm~vPV 534 (620)
T COG3914 460 --SVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYG---GHTTASDALWMGVPV 534 (620)
T ss_pred --cEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCC---CccchHHHHHhcCce
Confidence 78999886566677899999999999998899999966 67788999999999777554 478999999999999
Q ss_pred EEcC-------Cc-------ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh---hCHH
Q 001646 453 IAPD-------LS-------NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKN---LMAL 515 (1038)
Q Consensus 453 IaTd-------vg-------Gi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~---Fs~e 515 (1038)
|+-. .| |++|.|. .+.++..+.-..+-.| ..++++....-++..+. |+.+
T Consensus 535 lT~~G~~FasR~~~si~~~agi~e~vA----------~s~~dYV~~av~~g~d---ral~q~~r~~l~~~r~tspL~d~~ 601 (620)
T COG3914 535 LTRVGEQFASRNGASIATNAGIPELVA----------DSRADYVEKAVAFGSD---RALRQQVRAELKRSRQTSPLFDPK 601 (620)
T ss_pred eeeccHHHHHhhhHHHHHhcCCchhhc----------CCHHHHHHHHHHhccc---HHHHHhhHHHHHhccccCcccCHH
Confidence 9732 22 3333332 2567777777777777 66666655443333333 8999
Q ss_pred HHHHHHHHHHHHhh
Q 001646 516 ETIEGYAMLLENVL 529 (1038)
Q Consensus 516 ~ia~~Y~~Lye~vL 529 (1038)
..++.+..+|..+.
T Consensus 602 ~far~le~~y~~M~ 615 (620)
T COG3914 602 AFARKLETLYWGMW 615 (620)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 109
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.55 E-value=6.9e-08 Score=96.42 Aligned_cols=157 Identities=15% Similarity=0.019 Sum_probs=77.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh--hhcCc--------eEEEcccchhHHHHhhhcCCcEEEE
Q 001646 152 PDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--RNIGV--------PVAILQTGREKASFVNWLNYDGILV 221 (1038)
Q Consensus 152 ~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~--e~~gI--------~v~~l~~~rkl~~lI~~~kpDIVhv 221 (1038)
.....||+++++.+++++|+++||+|+|++.......... ..... ..........+...++..+||+||+
T Consensus 7 ~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DiVh~ 86 (177)
T PF13439_consen 7 FLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKPDIVHI 86 (177)
T ss_dssp -TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-SEEEC
T ss_pred cCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcCCCeEEe
Confidence 3456899999999999999999999999988654322111 00000 0011111234556677789999999
Q ss_pred cCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHH-HHHHHHHHhcceEeccCCcc--ccccccCCCC
Q 001646 222 NSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELL-NDWKKVFNRATVVVFPDYVL--PMMYSAFDAG 298 (1038)
Q Consensus 222 hs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lI-s~~~~~~~~a~~vvfps~~l--~viyn~vd~~ 298 (1038)
|..... ....+... ++|++++.|+.................+. ......+..++.++..+... .+...+++.+
T Consensus 87 ~~~~~~-~~~~~~~~---~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~~~~~~~ 162 (177)
T PF13439_consen 87 HGPPAF-WIALLACR---KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELIKFGIPPE 162 (177)
T ss_dssp CTTHCC-CHHHHHHH---CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHHHHT--SS
T ss_pred cccchh-HHHHHhcc---CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHHHhCCccc
Confidence 986652 22322222 68999999964321000000000001111 11122345666666665551 1222356778
Q ss_pred CEEEcCCCCCCcccc
Q 001646 299 NYYVIPGSPAKAWEA 313 (1038)
Q Consensus 299 ki~VIPgsgVD~~~f 313 (1038)
++.+|++ |+|...|
T Consensus 163 ki~vI~n-gid~~~F 176 (177)
T PF13439_consen 163 KIHVIYN-GIDTDRF 176 (177)
T ss_dssp -EEE-----B-CCCH
T ss_pred CCEEEEC-CccHHHc
Confidence 8999995 8887443
No 110
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.53 E-value=4.5e-05 Score=88.37 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=62.7
Q ss_pred CCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccc----ccccccCccEEEEcCC-
Q 001646 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDRVNGYLFPKE- 476 (1038)
Q Consensus 402 gL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi----~EiV~dG~nGlLv~~~- 476 (1038)
.+++ +|.+.++. ....+|..||++|.-. | ..++.||+++|+|+|+.+..+- .+.+.....|..++..
T Consensus 285 ~~~~-~v~~~~~~-p~~~ll~~~d~~I~hg-----G-~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~ 356 (401)
T cd03784 285 DLPD-NVRVVDFV-PHDWLLPRCAAVVHHG-----G-AGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRE 356 (401)
T ss_pred CCCC-ceEEeCCC-CHHHHhhhhheeeecC-----C-chhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCccc
Confidence 4455 79999987 4678899999999443 3 5799999999999999876642 3344444457666554
Q ss_pred -CHHHHHHHHHHHHHc
Q 001646 477 -NIKALTHIILQVITN 491 (1038)
Q Consensus 477 -D~eaLAeAI~~LLsD 491 (1038)
+++++++++.+++++
T Consensus 357 ~~~~~l~~al~~~l~~ 372 (401)
T cd03784 357 LTAERLAAALRRLLDP 372 (401)
T ss_pred CCHHHHHHHHHHHhCH
Confidence 689999999999987
No 111
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.51 E-value=2.9e-05 Score=89.97 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=75.5
Q ss_pred CCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccc----cccccCccEEEEcCC--
Q 001646 403 YPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR----KYVDDRVNGYLFPKE-- 476 (1038)
Q Consensus 403 L~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~----EiV~dG~nGlLv~~~-- 476 (1038)
+++ +|.+.+++.. ..++..||++|..+ |. .+++||+++|+|+|+.+..+-. +.+.+...|..++..
T Consensus 273 ~~~-~v~~~~~~p~-~~ll~~~~~~I~hg-----G~-~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~ 344 (392)
T TIGR01426 273 LPP-NVEVRQWVPQ-LEILKKADAFITHG-----GM-NSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEV 344 (392)
T ss_pred CCC-CeEEeCCCCH-HHHHhhCCEEEECC-----Cc-hHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccC
Confidence 345 7999998854 47899999999766 33 4889999999999997655432 334444457666543
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 001646 477 NIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAML 524 (1038)
Q Consensus 477 D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~L 524 (1038)
++++++++|.++++| ++.++++...+......-..+..++...++
T Consensus 345 ~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 345 TAEKLREAVLAVLSD---PRYAERLRKMRAEIREAGGARRAADEIEGF 389 (392)
T ss_pred CHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 579999999999999 765555544443333334555555544443
No 112
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.47 E-value=3e-06 Score=105.74 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=134.7
Q ss_pred CCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCC----chHHHHHHHHHHcCCC
Q 001646 330 FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTS----NYSVVIEAIAHNLHYP 404 (1038)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e----~Y~~~LeeLa~qLgL~ 404 (1038)
+.++.++|+++. |+... |+.+++++.+..+.+-.. +...+++|+++| +...+ .+.+.+.+++++..+.
T Consensus 474 ldpd~ltigfar-Rfa~Y---KR~~Lil~dl~rl~~il~---~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~ 546 (778)
T cd04299 474 LDPNVLTIGFAR-RFATY---KRATLLLRDPERLKRLLN---DPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFR 546 (778)
T ss_pred cCCCccEEeeee-cchhh---hhHHHHHHHHHHHHHHhh---CCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCC
Confidence 446667788887 77666 999999999888754210 111358999999 55432 3344555555555566
Q ss_pred CceEEE-ccChhhH-HHHHHhcCEEEEccc--CCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcC-----
Q 001646 405 LGVVKH-MAAEGDV-DSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK----- 475 (1038)
Q Consensus 405 d~~V~f-lG~~edV-~~lLaaADIfVlPS~--~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~----- 475 (1038)
+ +|.| .++...+ ..+++.||+.++||+ +|. .|..=|-||..|.+-+++--|...|.- ++.||+.+..
T Consensus 547 ~-kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EA--sGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~ 622 (778)
T cd04299 547 G-RIVFLEDYDMALARHLVQGVDVWLNTPRRPLEA--SGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYE 622 (778)
T ss_pred C-cEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCC--CccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCcccc
Confidence 6 5555 5566555 557999999999999 884 899999999999999999999888877 7899999988
Q ss_pred -------CCHHHHHHHHHHHHH----c---CCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH
Q 001646 476 -------ENIKALTHIILQVIT----N---GKISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (1038)
Q Consensus 476 -------~D~eaLAeAI~~LLs----D---g~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Ly 525 (1038)
.+.++|.++|++-+- + +-+|..+.+|.+++.... ..|++..+++.|.+-+
T Consensus 623 ~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 623 DDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred ChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 567777777754322 2 113566777777777665 6799999999997644
No 113
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.47 E-value=1.1e-05 Score=93.46 Aligned_cols=303 Identities=12% Similarity=0.073 Sum_probs=162.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCCCcc------hhhhhh--cCce--EE-Eccc--c-------
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLEDGRA------HEVWRN--IGVP--VA-ILQT--G------- 204 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~-G~eV~V~t~~~g~~------~~~~e~--~gI~--v~-~l~~--~------- 204 (1038)
+|++|++.- .--.-+..+.++|++. ++++.++..+..-. ...... +++. +. .+.. .
T Consensus 2 ki~~v~GtR---pe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T TIGR03568 2 KICVVTGTR---ADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSM 78 (365)
T ss_pred eEEEEEecC---hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHH
Confidence 566666532 1223456677778774 78888887654211 112222 2221 11 1111 1
Q ss_pred ----hhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchh-HHhHHHhhhhchhHHHHHHHHHHHhcc
Q 001646 205 ----REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL-ATRARNYASSGQLELLNDWKKVFNRAT 279 (1038)
Q Consensus 205 ----rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L-~~~lek~~~~~~d~lIs~~~~~~~~a~ 279 (1038)
..+.+++...+||+|+++.-...++.+.++. ...++|++ ++|+... ....+.......+. .++
T Consensus 79 ~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA-~~~~IPv~-HveaG~rs~~~~eE~~r~~i~~----------la~ 146 (365)
T TIGR03568 79 GLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAA-ALLNIPIA-HIHGGEVTEGAIDESIRHAITK----------LSH 146 (365)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHH-HHhCCcEE-EEECCccCCCCchHHHHHHHHH----------HHh
Confidence 2345567778999999999554334444443 36679976 4554211 10011111111111 111
Q ss_pred eEeccCCc--cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCC-CEEEEEEecccc--cccccccHH
Q 001646 280 VVVFPDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPD-DLVIAIVGTQFM--YRGLWLEHA 354 (1038)
Q Consensus 280 ~vvfps~~--l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d-~~vIL~VGsrl~--~~KGiKgld 354 (1038)
....|+.. ...+..+.+..++.++-+.++|.... .....+..+.++++++++ +++++.+- +.. +......+.
T Consensus 147 l~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~--~~~~~~~~~~~~lgl~~~~~~vlvt~H-p~~~~~~~~~~~l~ 223 (365)
T TIGR03568 147 LHFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILS--LDLLSKEELEEKLGIDLDKPYALVTFH-PVTLEKESAEEQIK 223 (365)
T ss_pred hccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHh--hhccCHHHHHHHhCCCCCCCEEEEEeC-CCcccccCchHHHH
Confidence 11112211 22333455566777776656664211 111124567778888754 44444444 322 221123455
Q ss_pred HHHHHHHHchhhcccCCCCCCCEEEEEE-eCCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcc
Q 001646 355 LILRALLPLFSEVSVENESNSPIKVMIL-SGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGS 431 (1038)
Q Consensus 355 lLLeAl~~L~~k~p~~~~~~~~vkLVIV-GG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS 431 (1038)
.+++++..+. .+ +.++.- +++......+.++++.. . .+ +|.+++.. .++..+++.|+++|--|
T Consensus 224 ~li~~L~~~~---~~-------~~vi~P~~~p~~~~i~~~i~~~~~--~-~~-~v~l~~~l~~~~~l~Ll~~a~~vitdS 289 (365)
T TIGR03568 224 ELLKALDELN---KN-------YIFTYPNADAGSRIINEAIEEYVN--E-HP-NFRLFKSLGQERYLSLLKNADAVIGNS 289 (365)
T ss_pred HHHHHHHHhc---cC-------CEEEEeCCCCCchHHHHHHHHHhc--C-CC-CEEEECCCChHHHHHHHHhCCEEEEcC
Confidence 5566665442 12 322221 23433222333333321 1 23 69999965 89999999999999655
Q ss_pred cCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 432 FLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 432 ~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
-| .+.||.++|+|||+ ++.-+|.+..|.|++++. .|++++.+++.++ .+
T Consensus 290 ------Sg-gi~EA~~lg~Pvv~--l~~R~e~~~~g~nvl~vg-~~~~~I~~a~~~~-~~ 338 (365)
T TIGR03568 290 ------SS-GIIEAPSFGVPTIN--IGTRQKGRLRADSVIDVD-PDKEEIVKAIEKL-LD 338 (365)
T ss_pred ------hh-HHHhhhhcCCCEEe--ecCCchhhhhcCeEEEeC-CCHHHHHHHHHHH-hC
Confidence 12 23799999999995 456788888888888784 5899999999994 45
No 114
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.45 E-value=7e-06 Score=96.94 Aligned_cols=182 Identities=9% Similarity=0.044 Sum_probs=122.7
Q ss_pred HHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCC
Q 001646 324 VRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHY 403 (1038)
Q Consensus 324 lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL 403 (1038)
.|..+|++++.++++++. ++. |-.+..++++..+.+..|+ .+|++...+.. -...+++.+.+.|+
T Consensus 275 ~R~~~gLp~d~vvF~~fn-~~~-----KI~p~~l~~W~~IL~~vP~-------S~L~L~~~~~~--~~~~l~~~~~~~Gv 339 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFN-NLF-----KISPETLDLWARILKAVPN-------SRLWLLRFPAS--GEARLRRRFAAHGV 339 (468)
T ss_dssp ETGGGT--SSSEEEEE-S--GG-----G--HHHHHHHHHHHHHSTT-------EEEEEEETSTT--HHHHHHHHHHHTTS
T ss_pred CHHHcCCCCCceEEEecC-ccc-----cCCHHHHHHHHHHHHhCCC-------cEEEEeeCCHH--HHHHHHHHHHHcCC
Confidence 477899999987777776 322 5667789999999999998 88988874432 24788888999999
Q ss_pred CCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccc-----cc-cCccEEEEcC
Q 001646 404 PLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKY-----VD-DRVNGYLFPK 475 (1038)
Q Consensus 404 ~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~Ei-----V~-dG~nGlLv~~ 475 (1038)
..++|.|.+.. ++-...|+.+||++=|..+- -+.+.+||+.+|+|||+-.......= +. =|..-++.
T Consensus 340 ~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~n---G~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA-- 414 (468)
T PF13844_consen 340 DPDRIIFSPVAPREEHLRRYQLADICLDTFPYN---GGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA-- 414 (468)
T ss_dssp -GGGEEEEE---HHHHHHHGGG-SEEE--SSS-----SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB---
T ss_pred ChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCC---CcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC--
Confidence 97799999865 44555678899999887665 38999999999999998754322211 10 12222333
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHh
Q 001646 476 ENIKALTHIILQVITNGKISPFARNIASIGRRSVKN---LMALETIEGYAMLLENV 528 (1038)
Q Consensus 476 ~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~---Fs~e~ia~~Y~~Lye~v 528 (1038)
.|.+++.+.-.++.+| ++.++++...-++...+ |+....++.+++.|+.+
T Consensus 415 ~s~~eYv~~Av~La~D---~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 415 DSEEEYVEIAVRLATD---PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp SSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999 99999998888776633 89999999999988764
No 115
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.41 E-value=6.7e-07 Score=87.80 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=74.9
Q ss_pred ChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccc------------hhHHHHh--hhcCCcEEEEc
Q 001646 157 DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG------------REKASFV--NWLNYDGILVN 222 (1038)
Q Consensus 157 GGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~------------rkl~~lI--~~~kpDIVhvh 222 (1038)
||++.++.++++.|.++||+|+|++....+........++++..++.. ..+...+ ...+||+||+|
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~ 80 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHAH 80 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEec
Confidence 899999999999999999999999987655433333445665544322 2234445 66799999999
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc--cccccccCCCCCE
Q 001646 223 SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV--LPMMYSAFDAGNY 300 (1038)
Q Consensus 223 s~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~--l~viyn~vd~~ki 300 (1038)
++.. ..+..++. +..++|+|+++|+...... ..... .......+..++.++.+++.+.. ..+...+++.+++
T Consensus 81 ~~~~-~~~~~~~~-~~~~~p~v~~~h~~~~~~~-~~~~~---~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~g~~~~ri 154 (160)
T PF13579_consen 81 SPTA-GLVAALAR-RRRGIPLVVTVHGTLFRRG-SRWKR---RLYRWLERRLLRRADRVIVVSEAMRRYLRRYGVPPDRI 154 (160)
T ss_dssp HHHH-HHHHHHHH-HHHT--EEEE-SS-T-------HHH---HHHHHHHHHHHHH-SEEEESSHHHHHHHHHH---GGGE
T ss_pred ccch-hHHHHHHH-HccCCcEEEEECCCchhhc-cchhh---HHHHHHHHHHHhcCCEEEECCHHHHHHHHHhCCCCCcE
Confidence 9654 35555553 2457999999997332211 00111 11112234577788887777655 2222344666788
Q ss_pred EEcCC
Q 001646 301 YVIPG 305 (1038)
Q Consensus 301 ~VIPg 305 (1038)
.+|||
T Consensus 155 ~vipn 159 (160)
T PF13579_consen 155 HVIPN 159 (160)
T ss_dssp EE---
T ss_pred EEeCc
Confidence 88874
No 116
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.33 E-value=9.4e-05 Score=84.67 Aligned_cols=279 Identities=13% Similarity=0.131 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccc---------------hhHHHHhhhcCCcEEEEc
Q 001646 158 PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG---------------REKASFVNWLNYDGILVN 222 (1038)
Q Consensus 158 Gae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~---------------rkl~~lI~~~kpDIVhvh 222 (1038)
..-.....+++.|.+.||+|.|.+...+......+.+|++...+... .++.+++...+||+++++
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~ 90 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISF 90 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEec
Confidence 35567888999999999999999988877778888888887665432 123444666899999987
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccccccccCCC-CCEE
Q 001646 223 SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDA-GNYY 301 (1038)
Q Consensus 223 s~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~viyn~vd~-~ki~ 301 (1038)
+....+.++.. .++|.|...+..... .. .+-.+..++.+..|...-......+.. +++.
T Consensus 91 ~s~~a~~va~~-----lgiP~I~f~D~e~a~-~~--------------~~Lt~Pla~~i~~P~~~~~~~~~~~G~~~~i~ 150 (335)
T PF04007_consen 91 GSPEAARVAFG-----LGIPSIVFNDTEHAI-AQ--------------NRLTLPLADVIITPEAIPKEFLKRFGAKNQIR 150 (335)
T ss_pred CcHHHHHHHHH-----hCCCeEEEecCchhh-cc--------------ceeehhcCCeeECCcccCHHHHHhcCCcCCEE
Confidence 65542223332 357988776641111 00 011223445554443221100011111 2333
Q ss_pred EcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEec-ccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEE
Q 001646 302 VIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGT-QFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVM 380 (1038)
Q Consensus 302 VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGs-rl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLV 380 (1038)
..+|..-..+ ..++.+ ...+.+++|+++++.+++=... .-.+..| ....+-+.+..|.+.. + . ++
T Consensus 151 ~y~G~~E~ay-l~~F~P--d~~vl~~lg~~~~~yIvvR~~~~~A~y~~~--~~~i~~~ii~~L~~~~-~-------~-vV 216 (335)
T PF04007_consen 151 TYNGYKELAY-LHPFKP--DPEVLKELGLDDEPYIVVRPEAWKASYDNG--KKSILPEIIEELEKYG-R-------N-VV 216 (335)
T ss_pred EECCeeeEEe-ecCCCC--ChhHHHHcCCCCCCEEEEEeccccCeeecC--ccchHHHHHHHHHhhC-c-------e-EE
Confidence 3332111111 111222 3567788997766544443321 1123333 2233445555555442 2 2 55
Q ss_pred EEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc-
Q 001646 381 ILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS- 458 (1038)
Q Consensus 381 IVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg- 458 (1038)
++. .... .++.+..+ +.+....-+..+++..||++|-.+ |....||...|+|+|.+..|
T Consensus 217 ~ipr~~~~-------~~~~~~~~-----~~i~~~~vd~~~Ll~~a~l~Ig~g-------gTMa~EAA~LGtPaIs~~~g~ 277 (335)
T PF04007_consen 217 IIPRYEDQ-------RELFEKYG-----VIIPPEPVDGLDLLYYADLVIGGG-------GTMAREAALLGTPAISCFPGK 277 (335)
T ss_pred EecCCcch-------hhHHhccC-----ccccCCCCCHHHHHHhcCEEEeCC-------cHHHHHHHHhCCCEEEecCCc
Confidence 555 2221 12233221 333333336668999999998654 57889999999999997543
Q ss_pred --ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 459 --NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 459 --Gi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
+.-+++.+ .|+++...|++++.+.+...+..
T Consensus 278 ~~~vd~~L~~--~Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 278 LLAVDKYLIE--KGLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred chhHHHHHHH--CCCeEecCCHHHHHHHHHHhhhc
Confidence 33344544 58899999999999876665544
No 117
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.29 E-value=7.4e-05 Score=84.66 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=59.9
Q ss_pred eEEEccCh-hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccc------ccccCccEEEEcCCCHH
Q 001646 407 VVKHMAAE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRK------YVDDRVNGYLFPKENIK 479 (1038)
Q Consensus 407 ~V~flG~~-edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~E------iV~dG~nGlLv~~~D~e 479 (1038)
+|.+.++. +++.++|..||++|.-+ |+ .++.||+++|+|+|..+..+..| .+.+...|...+..+.
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad~vI~~~-----G~-~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~- 302 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAELVITHG-----GF-SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL- 302 (321)
T ss_pred CEEEEECChHHHHHHHHhCCEEEECC-----Ch-HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-
Confidence 78888887 58999999999999987 23 37999999999999988876544 3445456888877776
Q ss_pred HHHHHHHHHHHc
Q 001646 480 ALTHIILQVITN 491 (1038)
Q Consensus 480 aLAeAI~~LLsD 491 (1038)
++.+++..++.+
T Consensus 303 ~~~~~~~~~~~~ 314 (321)
T TIGR00661 303 RLLEAILDIRNM 314 (321)
T ss_pred HHHHHHHhcccc
Confidence 555566665555
No 118
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.27 E-value=0.00018 Score=80.63 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=80.7
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEc
Q 001646 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (1038)
Q Consensus 332 ~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~fl 411 (1038)
+.+.+++++| -... ..++++++.+. + ..++++|.... +. . .. +|.+.
T Consensus 191 ~~~~iLv~~g-g~~~-------~~~~~~l~~~~----~-------~~~~v~g~~~~----~~--------~-~~-ni~~~ 237 (318)
T PF13528_consen 191 DEPKILVYFG-GGGP-------GDLIEALKALP----D-------YQFIVFGPNAA----DP--------R-PG-NIHVR 237 (318)
T ss_pred CCCEEEEEeC-CCcH-------HHHHHHHHhCC----C-------CeEEEEcCCcc----cc--------c-CC-CEEEe
Confidence 4566888888 2222 24567776644 3 67888873321 00 1 33 79999
Q ss_pred cCh-hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccc------cccCccEEEEcC--CCHHHHH
Q 001646 412 AAE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKY------VDDRVNGYLFPK--ENIKALT 482 (1038)
Q Consensus 412 G~~-edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~Ei------V~dG~nGlLv~~--~D~eaLA 482 (1038)
++. .++.++++.||++|..+-+ .+++||+++|+|+|+-+..+..|. +..-..|..++. -+++.|+
T Consensus 238 ~~~~~~~~~~m~~ad~vIs~~G~------~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~ 311 (318)
T PF13528_consen 238 PFSTPDFAELMAAADLVISKGGY------TTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLA 311 (318)
T ss_pred ecChHHHHHHHHhCCEEEECCCH------HHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHH
Confidence 987 8999999999999988722 369999999999999887765443 334344666543 3678888
Q ss_pred HHHHHH
Q 001646 483 HIILQV 488 (1038)
Q Consensus 483 eAI~~L 488 (1038)
++|.++
T Consensus 312 ~~l~~~ 317 (318)
T PF13528_consen 312 EFLERL 317 (318)
T ss_pred HHHhcC
Confidence 888653
No 119
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=0.00024 Score=81.61 Aligned_cols=338 Identities=12% Similarity=0.091 Sum_probs=189.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHHHHcC-CeEEEEEcCCCc----chhhhhhcCce--EEEcccc------------
Q 001646 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIG-YAIQVYSLEDGR----AHEVWRNIGVP--VAILQTG------------ 204 (1038)
Q Consensus 144 ~prIaiV~~~L~iGGae~~v~~LAkaL~k~G-~eV~V~t~~~g~----~~~~~e~~gI~--v~~l~~~------------ 204 (1038)
+.||++|++. -.--.-+..+..++.+.+ .+..|+..+..- ....++.++++ .+.+...
T Consensus 3 ~~Kv~~I~GT---RPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~ 79 (383)
T COG0381 3 MLKVLTIFGT---RPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGN 79 (383)
T ss_pred ceEEEEEEec---CHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHH
Confidence 5677888774 233345667788888887 788777765422 11223444443 1222211
Q ss_pred --hhHHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhH--HhHHHhhhhchhHHHHHHHHHHHhcce
Q 001646 205 --REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLA--TRARNYASSGQLELLNDWKKVFNRATV 280 (1038)
Q Consensus 205 --rkl~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~--~~lek~~~~~~d~lIs~~~~~~~~a~~ 280 (1038)
..+.+++...+||+|.+|+--..++.+.+++ .+.++|+...--|.... .+-+.+.....+. ++.+
T Consensus 80 ~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa-~~~~IpV~HvEAGlRt~~~~~PEE~NR~l~~~-~S~~--------- 148 (383)
T COG0381 80 IIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAA-FYLKIPVGHVEAGLRTGDLYFPEEINRRLTSH-LSDL--------- 148 (383)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHH-HHhCCceEEEecccccCCCCCcHHHHHHHHHH-hhhh---------
Confidence 2345567779999999998766433334443 36678875433331000 0122222211111 1111
Q ss_pred EeccCCc--cccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHh-hCCCCCCEEEEEEecccccccccccHHHHH
Q 001646 281 VVFPDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVK-MGFKPDDLVIAIVGTQFMYRGLWLEHALIL 357 (1038)
Q Consensus 281 vvfps~~--l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lRek-lgi~~d~~vIL~VGsrl~~~KGiKgldlLL 357 (1038)
...|+.. ......+++.++++++-+.-+|.-................ ++...++.+++..-++-.-. +++..++
T Consensus 149 hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~---~~~~~i~ 225 (383)
T COG0381 149 HFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVG---EPLEEIC 225 (383)
T ss_pred hcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhccc---ccHHHHH
Confidence 1112111 2234556677777777764445421110001101111112 44455566666666443333 7888889
Q ss_pred HHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHH-HHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCC
Q 001646 358 RALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIA-HNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLE 434 (1038)
Q Consensus 358 eAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa-~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~E 434 (1038)
+|+..+.+++++ +.++.---+ + ..+++.. ..++-.+ +|+++.+. .+...++..|-+++.-|
T Consensus 226 ~al~~i~~~~~~-------~~viyp~H~-~----~~v~e~~~~~L~~~~-~v~li~pl~~~~f~~L~~~a~~iltDS--- 289 (383)
T COG0381 226 EALREIAEEYPD-------VIVIYPVHP-R----PRVRELVLKRLKNVE-RVKLIDPLGYLDFHNLMKNAFLILTDS--- 289 (383)
T ss_pred HHHHHHHHhCCC-------ceEEEeCCC-C----hhhhHHHHHHhCCCC-cEEEeCCcchHHHHHHHHhceEEEecC---
Confidence 999999999876 444433322 2 3455555 4455554 68888876 67778888887776655
Q ss_pred cCCcCHHHHHHHHcCCCEEEcC-CcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhC
Q 001646 435 EQTFPEILVKALCFRKPIIAPD-LSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLM 513 (1038)
Q Consensus 435 eqGFPlvLLEAMA~GkPVIaTd-vgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs 513 (1038)
|...=||-..|+||++-. ...-+|.++.|. -.++. .+.+.+.+++..++++ ++..++|+...--+..-..
T Consensus 290 ----GgiqEEAp~lg~Pvl~lR~~TERPE~v~agt-~~lvg-~~~~~i~~~~~~ll~~---~~~~~~m~~~~npYgdg~a 360 (383)
T COG0381 290 ----GGIQEEAPSLGKPVLVLRDTTERPEGVEAGT-NILVG-TDEENILDAATELLED---EEFYERMSNAKNPYGDGNA 360 (383)
T ss_pred ----CchhhhHHhcCCcEEeeccCCCCccceecCc-eEEeC-ccHHHHHHHHHHHhhC---hHHHHHHhcccCCCcCcch
Confidence 345559999999998854 445567776654 45555 4789999999999999 8888888655433332234
Q ss_pred HHHHHHHHHH
Q 001646 514 ALETIEGYAM 523 (1038)
Q Consensus 514 ~e~ia~~Y~~ 523 (1038)
.+++++....
T Consensus 361 s~rIv~~l~~ 370 (383)
T COG0381 361 SERIVEILLN 370 (383)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 120
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.18 E-value=3.2e-05 Score=75.92 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=68.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccc----------hhHHHHhhhcC
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG----------REKASFVNWLN 215 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~----------rkl~~lI~~~k 215 (1038)
+|++|.... +.++.++++.|.+.||+|++++..++. .......++.+..++.. ..+.++++..+
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~-~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~ 74 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDY-EKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEK 74 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCc-hhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCC
Confidence 355555543 457889999999999999999996543 22223445554444311 13455577789
Q ss_pred CcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCch
Q 001646 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT 251 (1038)
Q Consensus 216 pDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~ 251 (1038)
||+||+|.....++++.++......+|+|++.||..
T Consensus 75 ~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~ 110 (139)
T PF13477_consen 75 PDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSD 110 (139)
T ss_pred CCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCe
Confidence 999999998764466666654333489999999843
No 121
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=0.00054 Score=78.68 Aligned_cols=319 Identities=12% Similarity=0.077 Sum_probs=167.4
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch----------hhhhhcCce------EEEcccchhH
Q 001646 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH----------EVWRNIGVP------VAILQTGREK 207 (1038)
Q Consensus 144 ~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~----------~~~e~~gI~------v~~l~~~rkl 207 (1038)
+++|+++.+..+. ..+...+.++|+.+=-++.++..++.... ......|+. ...+...+.+
T Consensus 1 ~~ki~i~AGE~SG---DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~ 77 (381)
T COG0763 1 MLKIALSAGEASG---DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRREL 77 (381)
T ss_pred CceEEEEecccch---hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3578888887543 34455677888876337888777652211 111111111 0011112233
Q ss_pred HHHhhhcCCcEEEEcC-CchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHh---hhhchhHHHHHHHHHHHhcceEec
Q 001646 208 ASFVNWLNYDGILVNS-LEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNY---ASSGQLELLNDWKKVFNRATVVVF 283 (1038)
Q Consensus 208 ~~lI~~~kpDIVhvhs-~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~---~~~~~d~lIs~~~~~~~~a~~vvf 283 (1038)
.+.+...+||++++-. +...--+...+.+..+++|+|+.+--. .-.|-++. ..+..|.++. .+
T Consensus 78 ~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~Ps-VWAWr~~Ra~~i~~~~D~lLa------------il 144 (381)
T COG0763 78 VRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPS-VWAWRPKRAVKIAKYVDHLLA------------IL 144 (381)
T ss_pred HHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcc-eeeechhhHHHHHHHhhHeee------------ec
Confidence 3445568999888654 444333444454445568887665421 11111111 1111222221 12
Q ss_pred cCCccccccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCC-EEEEEEecccccccccccHHHHHHHHHH
Q 001646 284 PDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDD-LVIAIVGTQFMYRGLWLEHALILRALLP 362 (1038)
Q Consensus 284 ps~~l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~-~vIL~VGsrl~~~KGiKgldlLLeAl~~ 362 (1038)
|=+.-.+...+.+ ..+|-. +.-. .-++ ...++..|++++++.+. .+.+..|||-..- -.....+++|+..
T Consensus 145 PFE~~~y~k~g~~---~~yVGH-pl~d--~i~~-~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI--~rl~~~f~~a~~~ 215 (381)
T COG0763 145 PFEPAFYDKFGLP---CTYVGH-PLAD--EIPL-LPDREAAREKLGIDADEKTLALLPGSRRSEI--RRLLPPFVQAAQE 215 (381)
T ss_pred CCCHHHHHhcCCC---eEEeCC-hhhh--hccc-cccHHHHHHHhCCCCCCCeEEEecCCcHHHH--HHHHHHHHHHHHH
Confidence 2111111111111 223321 1111 0111 22356689999988765 5667788776541 1466778899999
Q ss_pred chhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHH
Q 001646 363 LFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEIL 442 (1038)
Q Consensus 363 L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvL 442 (1038)
+.+++|+ .++++---+.. |.....+..+...... .+.+. ..+-.+.+.+||+.+..| |.+.
T Consensus 216 l~~~~~~-------~~~vlp~~~~~--~~~~~~~~~~~~~~~~-~~~~~--~~~~~~a~~~aD~al~aS-------GT~t 276 (381)
T COG0763 216 LKARYPD-------LKFVLPLVNAK--YRRIIEEALKWEVAGL-SLILI--DGEKRKAFAAADAALAAS-------GTAT 276 (381)
T ss_pred HHhhCCC-------ceEEEecCcHH--HHHHHHHHhhccccCc-eEEec--CchHHHHHHHhhHHHHhc-------cHHH
Confidence 9989988 89888663321 2233333333222211 22222 246778999999999888 6899
Q ss_pred HHHHHcCCCEEEcC-Cc----------------ccccccccCcc--EEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 001646 443 VKALCFRKPIIAPD-LS----------------NIRKYVDDRVN--GYLFPKENIKALTHIILQVITNGKISPFARNIAS 503 (1038)
Q Consensus 443 LEAMA~GkPVIaTd-vg----------------Gi~EiV~dG~n--GlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~ 503 (1038)
+|+|.+|+|.|++. +. +.+.++.+... =++-..-.++.+++++..++.| ...+.++.+
T Consensus 277 LE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~---~~~~~~~~~ 353 (381)
T COG0763 277 LEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLN---GDRREALKE 353 (381)
T ss_pred HHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcC---hHhHHHHHH
Confidence 99999999987653 22 22233322110 0111123589999999999999 655555554
Q ss_pred HHHHHH
Q 001646 504 IGRRSV 509 (1038)
Q Consensus 504 ~are~a 509 (1038)
...+.-
T Consensus 354 ~~~~l~ 359 (381)
T COG0763 354 KFRELH 359 (381)
T ss_pred HHHHHH
Confidence 444433
No 122
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.98 E-value=0.0013 Score=79.83 Aligned_cols=312 Identities=9% Similarity=0.067 Sum_probs=164.4
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh----------hhhcCceEEEcc-------cc
Q 001646 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV----------WRNIGVPVAILQ-------TG 204 (1038)
Q Consensus 142 ~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~----------~e~~gI~v~~l~-------~~ 204 (1038)
...++|.++.++.+ +..+...++++|+++.-++.+...++...... ....|+ +..++ ..
T Consensus 224 ~~~~kIfI~AGE~S---GDlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~-~EVL~~l~~l~~~~ 299 (608)
T PRK01021 224 FSNTSCFISAGEHS---GDTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGF-WEVLLALFKLWYRY 299 (608)
T ss_pred ccCCeEEEEecccc---HHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHHhhhhhH-HHHHHHHHHHHHHH
Confidence 34578888888754 34677788999999887888887665332210 011111 01111 11
Q ss_pred hhHHHHhhhcCCcEEEEc-CCchhHHHHHHHhCCCCCCCEEEEEeCchhHHh---HHHhhhhchhHHHHHHH---HHHHh
Q 001646 205 REKASFVNWLNYDGILVN-SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR---ARNYASSGQLELLNDWK---KVFNR 277 (1038)
Q Consensus 205 rkl~~lI~~~kpDIVhvh-s~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~---lek~~~~~~d~lIs~~~---~~~~~ 277 (1038)
+++.+.+...+||++++- ++...--++..+.+...++|+|+.+--. .-.| --+...+..|.+++... ..|..
T Consensus 300 ~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPq-VWAWR~~Rikki~k~vD~ll~IfPFE~~~y~~ 378 (608)
T PRK01021 300 RKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPS-IWAWRPKRKTILEKYLDLLLLILPFEQNLFKD 378 (608)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc-ceeeCcchHHHHHHHhhhheecCccCHHHHHh
Confidence 233344566899998874 4444323444443322124887665421 1111 01111122232222111 11211
Q ss_pred cceEeccCCccccccccCCCCCEEEcCCCCC-CccccccccchhhHHHHHhhCCCCC-CEEEEEEeccccc-ccccccHH
Q 001646 278 ATVVVFPDYVLPMMYSAFDAGNYYVIPGSPA-KAWEADTNMDLYNDTVRVKMGFKPD-DLVIAIVGTQFMY-RGLWLEHA 354 (1038)
Q Consensus 278 a~~vvfps~~l~viyn~vd~~ki~VIPgsgV-D~~~f~~~~~~~k~~lReklgi~~d-~~vIL~VGsrl~~-~KGiKgld 354 (1038)
. ++ +..++- .|. |. .. ....+++.++++|++++ ..+.+..|||-.+ . ...+
T Consensus 379 ~---------------gv---~v~yVG-HPL~d~--i~--~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~---rllP 432 (608)
T PRK01021 379 S---------------PL---RTVYLG-HPLVET--IS--SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDIL---RNLT 432 (608)
T ss_pred c---------------CC---CeEEEC-CcHHhh--cc--cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHH---HHHH
Confidence 1 11 122222 122 11 01 11124566888898755 5566888887654 3 5667
Q ss_pred HHHHHHH--HchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEccc
Q 001646 355 LILRALL--PLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSF 432 (1038)
Q Consensus 355 lLLeAl~--~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~ 432 (1038)
.+++|+. .+.+ + .++++...+.. +.+.+++..+..++.. +.++.. ++-.+++++||+.+..|
T Consensus 433 v~l~aa~~~~l~~---~-------l~fvvp~a~~~--~~~~i~~~~~~~~~~~--~~ii~~-~~~~~~m~aaD~aLaaS- 496 (608)
T PRK01021 433 IQVQAFLASSLAS---T-------HQLLVSSANPK--YDHLILEVLQQEGCLH--SHIVPS-QFRYELMRECDCALAKC- 496 (608)
T ss_pred HHHHHHHHHHhcc---C-------eEEEEecCchh--hHHHHHHHHhhcCCCC--eEEecC-cchHHHHHhcCeeeecC-
Confidence 8888887 4433 2 67776543221 3356666665433212 333321 13478999999999988
Q ss_pred CCcCCcCHHHHHHHHcCCCEEEc-CCc------------------ccccccccCc-c-EEE--EcCCCHHHHHHHHHHHH
Q 001646 433 LEEQTFPEILVKALCFRKPIIAP-DLS------------------NIRKYVDDRV-N-GYL--FPKENIKALTHIILQVI 489 (1038)
Q Consensus 433 ~EeqGFPlvLLEAMA~GkPVIaT-dvg------------------Gi~EiV~dG~-n-GlL--v~~~D~eaLAeAI~~LL 489 (1038)
|.+.+||+.+|+|.|+. ..+ +.+.++.+.. . =++ -+.-+++.+++++ +++
T Consensus 497 ------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL 569 (608)
T PRK01021 497 ------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DIL 569 (608)
T ss_pred ------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHh
Confidence 78999999999998763 222 1111121111 0 122 1345799999996 888
Q ss_pred HcCCCcHHHHHHHHHHHHHHH
Q 001646 490 TNGKISPFARNIASIGRRSVK 510 (1038)
Q Consensus 490 sDg~l~elr~~mg~~are~ak 510 (1038)
.| ++.++++.+.-.+.-+
T Consensus 570 ~d---~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 570 KT---SQSKEKQKDACRDLYQ 587 (608)
T ss_pred cC---HHHHHHHHHHHHHHHH
Confidence 88 7766666555444443
No 123
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.96 E-value=0.00059 Score=79.28 Aligned_cols=154 Identities=14% Similarity=0.189 Sum_probs=100.3
Q ss_pred HHHHHhhCCCCCCE-EEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHH
Q 001646 322 DTVRVKMGFKPDDL-VIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHN 400 (1038)
Q Consensus 322 ~~lReklgi~~d~~-vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~q 400 (1038)
...++.+ ++++++ +.+..|||-.+- -+.+..+++++..+.+++|+ +++++...+.. ....+++....
T Consensus 173 ~~~~~~~-l~~~~~iIaLLPGSR~~EI--~rllP~~l~aa~~l~~~~p~-------l~fvvp~a~~~--~~~~i~~~~~~ 240 (373)
T PF02684_consen 173 AEAREKL-LDPDKPIIALLPGSRKSEI--KRLLPIFLEAAKLLKKQRPD-------LQFVVPVAPEV--HEELIEEILAE 240 (373)
T ss_pred HHHHHhc-CCCCCcEEEEeCCCCHHHH--HHHHHHHHHHHHHHHHhCCC-------eEEEEecCCHH--HHHHHHHHHHh
Confidence 3445555 665554 667778776542 14568899999999999988 89888773331 22445555555
Q ss_pred cCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcC-Cc----------------ccccc
Q 001646 401 LHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD-LS----------------NIRKY 463 (1038)
Q Consensus 401 LgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTd-vg----------------Gi~Ei 463 (1038)
.+... .+... ..+..+.+++||+.+..| |.+.+||+.+|+|.|+.. .. +++.+
T Consensus 241 ~~~~~-~~~~~--~~~~~~~m~~ad~al~~S-------GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Ni 310 (373)
T PF02684_consen 241 YPPDV-SIVII--EGESYDAMAAADAALAAS-------GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNI 310 (373)
T ss_pred hCCCC-eEEEc--CCchHHHHHhCcchhhcC-------CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhh
Confidence 44433 23322 347788999999999888 689999999999977543 32 22222
Q ss_pred cccCc--cEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHH
Q 001646 464 VDDRV--NGYLFPKENIKALTHIILQVITNGKISPFARN 500 (1038)
Q Consensus 464 V~dG~--nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~ 500 (1038)
+-+.. -=++-+.-+++.+++++..+++| ++.++.
T Consensus 311 ia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~ 346 (373)
T PF02684_consen 311 IAGREVVPELIQEDATPENIAAELLELLEN---PEKRKK 346 (373)
T ss_pred hcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHH
Confidence 22211 01223345799999999999999 665433
No 124
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.83 E-value=0.024 Score=68.78 Aligned_cols=144 Identities=13% Similarity=0.106 Sum_probs=88.8
Q ss_pred CCCEEEEEEeccccccccc-ccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEE
Q 001646 332 PDDLVIAIVGTQFMYRGLW-LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (1038)
Q Consensus 332 ~d~~vIL~VGsrl~~~KGi-KgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~f 410 (1038)
++.++++..|+.....+.. .-...+++|++.+. .++++..+.... . .++++ +|.+
T Consensus 295 ~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~------------~~viw~~~~~~~---~--------~~~p~-Nv~i 350 (507)
T PHA03392 295 TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLP------------YNVLWKYDGEVE---A--------INLPA-NVLT 350 (507)
T ss_pred CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCC------------CeEEEEECCCcC---c--------ccCCC-ceEE
Confidence 3457888888644221010 23455566666554 355555432210 1 14555 7999
Q ss_pred ccChhhHHHHHH--hcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCC--CHHHHH
Q 001646 411 MAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE--NIKALT 482 (1038)
Q Consensus 411 lG~~edV~~lLa--aADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~dG~nGlLv~~~--D~eaLA 482 (1038)
.++..+ .++|+ .+++||.-. | ..++.||+.+|+|+|+-+..+ ....+.....|..++.. +.+++.
T Consensus 351 ~~w~Pq-~~lL~hp~v~~fItHG-----G-~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~ 423 (507)
T PHA03392 351 QKWFPQ-RAVLKHKNVKAFVTQG-----G-VQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLV 423 (507)
T ss_pred ecCCCH-HHHhcCCCCCEEEecC-----C-cccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHH
Confidence 998743 55674 577777643 2 568899999999999976553 23334444457777653 678999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001646 483 HIILQVITNGKISPFARNIASIGRRSV 509 (1038)
Q Consensus 483 eAI~~LLsDg~l~elr~~mg~~are~a 509 (1038)
++|.++++| +..+++..+-++...
T Consensus 424 ~ai~~vl~~---~~y~~~a~~ls~~~~ 447 (507)
T PHA03392 424 LAIVDVIEN---PKYRKNLKELRHLIR 447 (507)
T ss_pred HHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 999999999 666555544444433
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.80 E-value=0.00025 Score=81.71 Aligned_cols=259 Identities=15% Similarity=0.146 Sum_probs=131.6
Q ss_pred HHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEec-cC
Q 001646 207 KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVF-PD 285 (1038)
Q Consensus 207 l~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvf-ps 285 (1038)
+...+...+||+|++++--...+.+.+++ .+.++| |.++|+.--. . ....-..+. ..+........+.| ++
T Consensus 59 ~~~~~~~~~Pd~Vlv~GD~~~~la~alaA-~~~~ip-v~HieaGlRs-~--d~~~g~~de---~~R~~i~~la~lhf~~t 130 (346)
T PF02350_consen 59 LADVLEREKPDAVLVLGDRNEALAAALAA-FYLNIP-VAHIEAGLRS-G--DRTEGMPDE---INRHAIDKLAHLHFAPT 130 (346)
T ss_dssp HHHHHHHHT-SEEEEETTSHHHHHHHHHH-HHTT-E-EEEES------S---TTSSTTHH---HHHHHHHHH-SEEEESS
T ss_pred HHHHHHhcCCCEEEEEcCCchHHHHHHHH-HHhCCC-EEEecCCCCc-c--ccCCCCchh---hhhhhhhhhhhhhccCC
Confidence 45557778999999998777444445554 367799 5667753000 0 000000111 12222222223333 32
Q ss_pred Cc--cccccccCCCCCEEEcCCCCCCccccccccchhhHHH-HHhh-CCCCCCEEEEEEecccccccccccHHHHHHHHH
Q 001646 286 YV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTV-RVKM-GFKPDDLVIAIVGTQFMYRGLWLEHALILRALL 361 (1038)
Q Consensus 286 ~~--l~viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~l-Rekl-gi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~ 361 (1038)
.. ..++..++++.+++++-+.++|.- ....+...... ...+ ...++++++++.= +.....-......+++++.
T Consensus 131 ~~~~~~L~~~G~~~~rI~~vG~~~~D~l--~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H-~~t~~~~~~~~~~i~~~l~ 207 (346)
T PF02350_consen 131 EEARERLLQEGEPPERIFVVGNPGIDAL--LQNKEEIEEKYKNSGILQDAPKPYILVTLH-PVTNEDNPERLEQILEALK 207 (346)
T ss_dssp HHHHHHHHHTT--GGGEEE---HHHHHH--HHHHHTTCC-HHHHHHHHCTTSEEEEEE-S--CCCCTHH--HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEEChHHHHHH--HHhHHHHhhhhhhHHHHhccCCCEEEEEeC-cchhcCChHHHHHHHHHHH
Confidence 22 445566777788888865555542 11100001111 1111 1144444444443 3333210134567778888
Q ss_pred HchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcC
Q 001646 362 PLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFP 439 (1038)
Q Consensus 362 ~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFP 439 (1038)
.|.+. ++ +.+++...+.. .....+.+...++ + +|.++.+. .+...+++.|+++|-=| |
T Consensus 208 ~L~~~-~~-------~~vi~~~hn~p-~~~~~i~~~l~~~---~-~v~~~~~l~~~~~l~ll~~a~~vvgdS-------s 267 (346)
T PF02350_consen 208 ALAER-QN-------VPVIFPLHNNP-RGSDIIIEKLKKY---D-NVRLIEPLGYEEYLSLLKNADLVVGDS-------S 267 (346)
T ss_dssp HHHHH-TT-------EEEEEE--S-H-HHHHHHHHHHTT----T-TEEEE----HHHHHHHHHHESEEEESS-------H
T ss_pred HHHhc-CC-------CcEEEEecCCc-hHHHHHHHHhccc---C-CEEEECCCCHHHHHHHHhcceEEEEcC-------c
Confidence 87766 45 78888775331 2234554444433 2 58888866 78899999999998766 3
Q ss_pred HHHHHHHHcCCCEEEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 001646 440 EILVKALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNI 501 (1038)
Q Consensus 440 lvLLEAMA~GkPVIaT-dvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~m 501 (1038)
...-||..+|+|||.- +.|.-++.+..+.+-+ +. .|++++.++|.+++++ .....++
T Consensus 268 GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl-v~-~~~~~I~~ai~~~l~~---~~~~~~~ 325 (346)
T PF02350_consen 268 GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL-VG-TDPEAIIQAIEKALSD---KDFYRKL 325 (346)
T ss_dssp HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-ET-SSHHHHHHHHHHHHH----HHHHHHH
T ss_pred cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-eC-CCHHHHHHHHHHHHhC---hHHHHhh
Confidence 3444999999999997 4455567777676555 76 6999999999999987 5554444
No 126
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.78 E-value=0.0011 Score=77.91 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=84.6
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 377 vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
.++++..|... ...-++++ ++...++. ....++..||++|... | -.++.||+.+|+|+|+-.
T Consensus 266 ~~vi~~~~~~~----------~~~~~~p~-n~~v~~~~-p~~~~l~~ad~vI~hG-----G-~gtt~eaL~~gvP~vv~P 327 (406)
T COG1819 266 VRVIVSLGGAR----------DTLVNVPD-NVIVADYV-PQLELLPRADAVIHHG-----G-AGTTSEALYAGVPLVVIP 327 (406)
T ss_pred cEEEEeccccc----------cccccCCC-ceEEecCC-CHHHHhhhcCEEEecC-----C-cchHHHHHHcCCCEEEec
Confidence 57777774432 01225666 78888887 3445899999999987 2 347899999999999866
Q ss_pred Ccc----cccccccCccEEEEc--CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 001646 457 LSN----IRKYVDDRVNGYLFP--KENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAML 524 (1038)
Q Consensus 457 vgG----i~EiV~dG~nGlLv~--~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~L 524 (1038)
.+. ..+.+++-..|...+ .-+++.++++|.+++.+ +..+++..+..+...+.-..++.++...++
T Consensus 328 ~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~~~~g~~~~a~~le~~ 398 (406)
T COG1819 328 DGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLAD---DSYRRAAERLAEEFKEEDGPAKAADLLEEF 398 (406)
T ss_pred CCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 552 334555656687777 47899999999999999 555554444333333334444444444433
No 127
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.0025 Score=73.03 Aligned_cols=117 Identities=12% Similarity=0.115 Sum_probs=94.3
Q ss_pred EEEccCh---hhHHHHHHhcCEEEEccc--CCcCCc--CHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHH
Q 001646 408 VKHMAAE---GDVDSVLNTADVVIYGSF--LEEQTF--PEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKA 480 (1038)
Q Consensus 408 V~flG~~---edV~~lLaaADIfVlPS~--~EeqGF--PlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~ea 480 (1038)
+...|+. ..+...+...|+.+.-++ .+..++ .+-+.|+|+||.|.|+....++...+.+|..-++. .|.++
T Consensus 239 ~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~--~d~kd 316 (373)
T COG4641 239 VQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVY--QDSKD 316 (373)
T ss_pred hhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEe--cCHHH
Confidence 4555533 568888899998876542 222244 88899999999999999999999999998864443 58999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHhh
Q 001646 481 LTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLENVL 529 (1038)
Q Consensus 481 LAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye~vL 529 (1038)
+.+++..++.. ++.++++++.|.+.+ ..|+-+.-+..+...+.++.
T Consensus 317 l~~~~~yll~h---~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI~ 363 (373)
T COG4641 317 LKEKLKYLLNH---PDERKEIAECAYERVLARHTYEERIFKLLNEIASIN 363 (373)
T ss_pred HHHHHHHHhcC---cchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999 45888888888877777643
No 128
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.004 Score=68.84 Aligned_cols=291 Identities=15% Similarity=0.125 Sum_probs=153.8
Q ss_pred eEEEEcCCC-CCC-hHHHHHHHHHHHHHHcCCeEEEEEcCCCc--chhhhhhcCceEEEcccchhHHHHhhhcCCcEEEE
Q 001646 146 QLALVFPDL-LID-PQQLQMVTIAIALREIGYAIQVYSLEDGR--AHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (1038)
Q Consensus 146 rIaiV~~~L-~iG-Gae~~v~~LAkaL~k~G~eV~V~t~~~g~--~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhv 221 (1038)
+|+|++... .+| |.-....+||+.|.+.|..+..++..+.+ ....++.+.+... .. ...|+..++|++++
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~~~--~~----~n~ik~~k~d~lI~ 75 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVLEG--RG----NNLIKEEKFDLLIF 75 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhhhccceee--ec----ccccccccCCEEEE
Confidence 566666644 444 55667899999999999888888876522 2223443332222 11 11667789999999
Q ss_pred cCCchhHHHHHHHhCCCCCCCEEEEEeC--chhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccccccccCCCCC
Q 001646 222 NSLEAKVVISNIMQEPFKSLPLVWTIHE--GTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGN 299 (1038)
Q Consensus 222 hs~~~~~~la~La~~~~~gIPvI~tiHg--~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~viyn~vd~~k 299 (1038)
.+.....-...+... -.+.|+++.-.. .++. +. +.++... ++..+.++ .-+.+
T Consensus 76 Dsygl~~dd~k~ik~-e~~~k~l~fDd~~~~~~~-----d~----d~ivN~~---~~a~~~y~------------~v~~k 130 (318)
T COG3980 76 DSYGLNADDFKLIKE-EAGSKILIFDDENAKSFK-----DN----DLIVNAI---LNANDYYG------------LVPNK 130 (318)
T ss_pred eccCCCHHHHHHHHH-HhCCcEEEecCCCccchh-----hh----Hhhhhhh---hcchhhcc------------ccCcc
Confidence 887664444444421 234565543221 1111 11 1111111 11111111 01123
Q ss_pred EEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEE
Q 001646 300 YYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKV 379 (1038)
Q Consensus 300 i~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkL 379 (1038)
..+.-|.+.- +..+.. ...|+..--.+.+-+++..| -..+ |++ .++.++.|.+.. +.+
T Consensus 131 ~~~~lGp~y~-----~lr~eF-~~~r~~~~~r~~r~ilI~lG-GsDp----k~l--t~kvl~~L~~~~---------~nl 188 (318)
T COG3980 131 TRYYLGPGYA-----PLRPEF-YALREENTERPKRDILITLG-GSDP----KNL--TLKVLAELEQKN---------VNL 188 (318)
T ss_pred eEEEecCCce-----eccHHH-HHhHHHHhhcchheEEEEcc-CCCh----hhh--HHHHHHHhhccC---------eeE
Confidence 3233321111 111111 12222221123333667777 2333 443 678888777653 445
Q ss_pred EEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCC--EE--Ec
Q 001646 380 MILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP--II--AP 455 (1038)
Q Consensus 380 VIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkP--VI--aT 455 (1038)
.||-|..... ...+++.++ ..+ ++.++-..++|..++..||+.+... |.++.||...|+| || +.
T Consensus 189 ~iV~gs~~p~-l~~l~k~~~---~~~-~i~~~~~~~dma~LMke~d~aI~Aa-------GstlyEa~~lgvP~l~l~~a~ 256 (318)
T COG3980 189 HIVVGSSNPT-LKNLRKRAE---KYP-NINLYIDTNDMAELMKEADLAISAA-------GSTLYEALLLGVPSLVLPLAE 256 (318)
T ss_pred EEEecCCCcc-hhHHHHHHh---hCC-CeeeEecchhHHHHHHhcchheecc-------chHHHHHHHhcCCceEEeeec
Confidence 5544422211 244555555 223 5888777889999999999998654 7899999999999 33 23
Q ss_pred CCcccccccccCccEEEEcC---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001646 456 DLSNIRKYVDDRVNGYLFPK---ENIKALTHIILQVITNGKISPFARNIASIGR 506 (1038)
Q Consensus 456 dvgGi~EiV~dG~nGlLv~~---~D~eaLAeAI~~LLsDg~l~elr~~mg~~ar 506 (1038)
+.-......+. -|+.... -...+....+.++..| ...+..+...++
T Consensus 257 NQ~~~a~~f~~--lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l~~~~~ 305 (318)
T COG3980 257 NQIATAKEFEA--LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNLSFGSK 305 (318)
T ss_pred cHHHHHHHHHh--cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhhhhccc
Confidence 33222222221 1222222 2467788888888888 777766554443
No 129
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.51 E-value=0.02 Score=64.27 Aligned_cols=280 Identities=14% Similarity=0.121 Sum_probs=160.2
Q ss_pred ChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccch----------------hHHHHhhhcCCcEEE
Q 001646 157 DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR----------------EKASFVNWLNYDGIL 220 (1038)
Q Consensus 157 GGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~r----------------kl~~lI~~~kpDIVh 220 (1038)
.........+...|++.||+|.+.|...+...+..+.+|++...+.... .+.+++...+||+.+
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i 89 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAI 89 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEe
Confidence 3455678899999999999999999988888888899998876654332 345556778999977
Q ss_pred E-cCCchhHHHHHHHhCCCCCCCEEEEEeCc-hhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc--cccccccCC
Q 001646 221 V-NSLEAKVVISNIMQEPFKSLPLVWTIHEG-TLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV--LPMMYSAFD 296 (1038)
Q Consensus 221 v-hs~~~~~~la~La~~~~~gIPvI~tiHg~-~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~--l~viyn~vd 296 (1038)
. |++.. +-++. ..++|.|+..... ... ..+. .+..|+.+..|... ......+-+
T Consensus 90 ~~~s~~l-~rvaf-----gLg~psIi~~D~ehA~~--qnkl--------------~~Pla~~ii~P~~~~~~~~~~~G~~ 147 (346)
T COG1817 90 GKHSPEL-PRVAF-----GLGIPSIIFVDNEHAEA--QNKL--------------TLPLADVIITPEAIDEEELLDFGAD 147 (346)
T ss_pred ecCCcch-hhHHh-----hcCCceEEecCChhHHH--Hhhc--------------chhhhhheecccccchHHHHHhCCC
Confidence 5 44443 22222 2346877655531 111 1111 22233333333222 111122333
Q ss_pred CCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEE-Eec-ccccccccccHHHHHHHHHHchhhcccCCCCC
Q 001646 297 AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAI-VGT-QFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (1038)
Q Consensus 297 ~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~-VGs-rl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~ 374 (1038)
+.++...+|.. .......+.+ ..++.+++|+.++.++|+. .-+ --.+..|-.+.+.+.+++..+.+.
T Consensus 148 p~~i~~~~gia-e~~~v~~f~p--d~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~-------- 216 (346)
T COG1817 148 PNKISGYNGIA-ELANVYGFVP--DPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKY-------- 216 (346)
T ss_pred ccceeccccee-EEeecccCCC--CHHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhC--------
Confidence 33333333210 0000111222 3466778999986544443 221 122334446666677777777653
Q ss_pred CCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEE
Q 001646 375 SPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (1038)
Q Consensus 375 ~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIa 454 (1038)
-.+++- .. ...+++.+ +..+ +...-...|.-+++-.|++++-.+ |.-.-||...|+|.|+
T Consensus 217 ---giV~ip--r~----~~~~eife--~~~n--~i~pk~~vD~l~Llyya~lvig~g-------gTMarEaAlLGtpaIs 276 (346)
T COG1817 217 ---GIVLIP--RE----KEQAEIFE--GYRN--IIIPKKAVDTLSLLYYATLVIGAG-------GTMAREAALLGTPAIS 276 (346)
T ss_pred ---cEEEec--Cc----hhHHHHHh--hhcc--ccCCcccccHHHHHhhhheeecCC-------chHHHHHHHhCCceEE
Confidence 222332 11 23344455 3333 332233345556777888887544 5567799999999999
Q ss_pred cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 455 PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 455 Tdvg---Gi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
+.-| +..++..+ .|.++...|+.+..+...+++.+
T Consensus 277 ~~pGkll~vdk~lie--~G~~~~s~~~~~~~~~a~~~l~~ 314 (346)
T COG1817 277 CYPGKLLAVDKYLIE--KGLLYHSTDEIAIVEYAVRNLKY 314 (346)
T ss_pred ecCCccccccHHHHh--cCceeecCCHHHHHHHHHHHhhc
Confidence 8844 23455544 68999988998877777777766
No 130
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.49 E-value=0.025 Score=63.74 Aligned_cols=271 Identities=13% Similarity=0.159 Sum_probs=153.1
Q ss_pred cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHH-HHHhcceEeccCCcccc--
Q 001646 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKK-VFNRATVVVFPDYVLPM-- 290 (1038)
Q Consensus 214 ~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~-~~~~a~~vvfps~~l~v-- 290 (1038)
.+.+=+++|+.....+...+...+..-..+.|++-|..+.... .....+++...+. +..+...++...-.+..
T Consensus 38 ~r~~rff~HGqFn~~lwlall~g~~~~~q~yWhiWGaDLYe~~----~~lk~rlfy~lRR~aq~rvg~v~atrGD~~~~a 113 (322)
T PRK02797 38 NRAQRFFLHGQFNPTLWLALLSGKIKPKQFYWHIWGADLYEES----KGLKFRLFYPLRRLAQKRVGHVFATRGDLSYFA 113 (322)
T ss_pred CccceEEEecCCCHHHHHHHHhCCcCccceEEEEEChhhhhcc----cchhHHHHHHHHHHHHhhcCeEEEecchHHHHH
Confidence 5678889999877545555554444445789999986665210 1111112222222 22233332221111111
Q ss_pred -ccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhccc
Q 001646 291 -MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (1038)
Q Consensus 291 -iyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~ 369 (1038)
..-.++ .+..+.|. -++. .... ... ...+++.+.+.+|..-.+. -++ ++|+..+.+...+
T Consensus 114 ~~~~~v~-~~llyfpt-~m~~----~l~~------~~~-~~~~~~~~tIlvGNSgd~S---N~H---ie~L~~l~~~~~~ 174 (322)
T PRK02797 114 QRHPKVP-GSLLYFPT-RMDP----SLNT------MAN-DRQRAGKMTILVGNSGDRS---NRH---IEALRALHQQFGD 174 (322)
T ss_pred HhcCCCC-ccEEecCC-cchh----hhcc------ccc-cccCCCceEEEEeCCCCCc---ccH---HHHHHHHHHHhCC
Confidence 111122 23334441 1111 0000 000 0122334667777677776 688 5566555443222
Q ss_pred CCCCCCCEEEEEE-e-CCCCCchHHHHHHHHHHcCCCCceEEEcc-Ch--hhHHHHHHhcCEEEEcccCCcCCcCHHHHH
Q 001646 370 ENESNSPIKVMIL-S-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (1038)
Q Consensus 370 ~~~~~~~vkLVIV-G-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG-~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLE 444 (1038)
++++++- | +...+.|.+.+++.+.++--.+ ++..+- .. +|..++++.||+.++.-..- ||+|.. +=
T Consensus 175 ------~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~-~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQ-QgiGnl-~l 245 (322)
T PRK02797 175 ------NVKIIVPMGYPANNQAYIEEVRQAGLALFGAE-NFQILTEKLPFDDYLALLRQCDLGYFIFARQ-QGIGTL-CL 245 (322)
T ss_pred ------CeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc-cEEehhhhCCHHHHHHHHHhCCEEEEeechh-hHHhHH-HH
Confidence 3777664 4 4356789999999999887645 566665 22 88999999999999988665 577754 45
Q ss_pred HHHcCCCEEEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 001646 445 ALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAM 523 (1038)
Q Consensus 445 AMA~GkPVIaT-dvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~ 523 (1038)
.+.+|+||+.+ +++-..++.+.|.. ++++.++. -.++. .+..++|+...++.+. |+.++.++.|.+
T Consensus 246 Li~~G~~v~l~r~n~fwqdl~e~gv~-Vlf~~d~L---~~~~v--------~e~~rql~~~dk~~I~-Ff~pn~~~~W~~ 312 (322)
T PRK02797 246 LIQLGKPVVLSRDNPFWQDLTEQGLP-VLFTGDDL---DEDIV--------REAQRQLASVDKNIIA-FFSPNYLQGWRN 312 (322)
T ss_pred HHHCCCcEEEecCCchHHHHHhCCCe-EEecCCcc---cHHHH--------HHHHHHHHhhCcceee-ecCHhHHHHHHH
Confidence 89999998775 67777777777653 33443332 11111 1223345555555555 999999999999
Q ss_pred HHHHhh
Q 001646 524 LLENVL 529 (1038)
Q Consensus 524 Lye~vL 529 (1038)
+++.+.
T Consensus 313 ~l~~~~ 318 (322)
T PRK02797 313 ALAIAA 318 (322)
T ss_pred HHHHhh
Confidence 998764
No 131
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.37 E-value=0.034 Score=63.56 Aligned_cols=283 Identities=14% Similarity=0.136 Sum_probs=151.8
Q ss_pred EEEcccchhHHHH-h---hhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHH
Q 001646 198 VAILQTGREKASF-V---NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKK 273 (1038)
Q Consensus 198 v~~l~~~rkl~~l-I---~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~ 273 (1038)
+......+.+... + +..+.+=+++|+.....+...++..+....++.|++-|..+..... ...-+++...+.
T Consensus 57 i~~~~~Kk~la~avi~~a~~~r~~kff~HGqFn~~lwlaLl~g~~~~~k~~WhIWGaDLYe~~~----~~k~rlfy~lRr 132 (360)
T PF07429_consen 57 IECFSSKKALAQAVIAKAKADRADKFFLHGQFNPWLWLALLFGKIKLKKCYWHIWGADLYEDSR----SLKFRLFYFLRR 132 (360)
T ss_pred eEEecCHHHHHHHHHHHHhhCccceEEEeccCcHHHHHHHHcCCccccceEEEEeCchhhcccc----ccchhHHHHHHH
Confidence 3444444444442 2 2357888999998875455555544455567899999866653211 111122222222
Q ss_pred -HHHhcceEeccCCccc---cccccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccc
Q 001646 274 -VFNRATVVVFPDYVLP---MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGL 349 (1038)
Q Consensus 274 -~~~~a~~vvfps~~l~---viyn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KG 349 (1038)
+..+...+......+. -.+..... ...+.| ..++... ........++...-+.+|..-.+.
T Consensus 133 ~aq~rvg~V~at~GDl~~~~q~~~~~~~-~~lyfP-t~m~~~~-----------~~~~~~~~~~~~ltILvGNSgd~s-- 197 (360)
T PF07429_consen 133 LAQKRVGHVFATRGDLAYFQQRYPRVPA-SLLYFP-TRMDPAL-----------TLSEKNKKNKGKLTILVGNSGDPS-- 197 (360)
T ss_pred HHHhhcCeEEEEcchHHHHHHHcCCCCc-eEEEcC-CCCchhh-----------hccccccCCCCceEEEEcCCCCCC--
Confidence 2233333322222211 11222222 233444 1232210 000111122334666677677776
Q ss_pred cccHHHHHHHHHHchhhcccCCCCCCCEEEEE-Ee-CCCCCchHHHHHHHHHHcCCCCceEEEcc-Ch--hhHHHHHHhc
Q 001646 350 WLEHALILRALLPLFSEVSVENESNSPIKVMI-LS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE--GDVDSVLNTA 424 (1038)
Q Consensus 350 iKgldlLLeAl~~L~~k~p~~~~~~~~vkLVI-VG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG-~~--edV~~lLaaA 424 (1038)
-++ ++|+..|.+...+ ++++++ .| |...+.|.+++.+.++++--.+ ++..+- +. +|..++++.|
T Consensus 198 -NnH---ieaL~~L~~~~~~------~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~-~~~iL~e~mpf~eYl~lL~~c 266 (360)
T PF07429_consen 198 -NNH---IEALEALKQQFGD------DVKIIVPLSYGANNQAYIQQVIQAGKELFGAE-NFQILTEFMPFDEYLALLSRC 266 (360)
T ss_pred -ccH---HHHHHHHHHhcCC------CeEEEEECCCCCchHHHHHHHHHHHHHhcCcc-ceeEhhhhCCHHHHHHHHHhC
Confidence 688 6666666543322 367665 34 5445678899999888775544 576554 33 8999999999
Q ss_pred CEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc-ccccccccCccEEEEcC--CCHHHHHHHHHHHHHcCCCcHHHHHH
Q 001646 425 DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS-NIRKYVDDRVNGYLFPK--ENIKALTHIILQVITNGKISPFARNI 501 (1038)
Q Consensus 425 DIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg-Gi~EiV~dG~nGlLv~~--~D~eaLAeAI~~LLsDg~l~elr~~m 501 (1038)
|+.++....- ||+|. ++=.+.+|+||+.+... -..++.+.+. -+++.. -|...++++=.++..-
T Consensus 267 Dl~if~~~RQ-QgiGn-I~lLl~~G~~v~L~~~np~~~~l~~~~i-pVlf~~d~L~~~~v~ea~rql~~~---------- 333 (360)
T PF07429_consen 267 DLGIFNHNRQ-QGIGN-ICLLLQLGKKVFLSRDNPFWQDLKEQGI-PVLFYGDELDEALVREAQRQLANV---------- 333 (360)
T ss_pred CEEEEeechh-hhHhH-HHHHHHcCCeEEEecCChHHHHHHhCCC-eEEeccccCCHHHHHHHHHHHhhC----------
Confidence 9999999775 57775 45589999999876544 4445444443 333332 2334444443333322
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 001646 502 ASIGRRSVKNLMALETIEGYAMLLEN 527 (1038)
Q Consensus 502 g~~are~ak~Fs~e~ia~~Y~~Lye~ 527 (1038)
-++.+ .|...+..+.+.+.+.-
T Consensus 334 ---dk~~i-aFf~pny~~~w~~~l~~ 355 (360)
T PF07429_consen 334 ---DKQQI-AFFAPNYLQGWRQALRL 355 (360)
T ss_pred ---cccce-eeeCCchHHHHHHHHHH
Confidence 11111 16666777777766643
No 132
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.17 E-value=0.018 Score=66.51 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=64.1
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEcc
Q 001646 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (1038)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG 412 (1038)
+..+.++.|||-..- .+.+..+++|+..+.++. ..+++.|.+.. +.+++...+. . .+.+.+
T Consensus 167 ~~~I~llPGSR~~Ei--~~llP~~~~aa~~L~~~~---------~~~~i~~a~~~----~~i~~~~~~~--~--~~~~~~ 227 (347)
T PRK14089 167 EGTIAFMPGSRKSEI--KRLMPIFKELAKKLEGKE---------KILVVPSFFKG----KDLKEIYGDI--S--EFEISY 227 (347)
T ss_pred CCEEEEECCCCHHHH--HHHHHHHHHHHHHHhhcC---------cEEEEeCCCcH----HHHHHHHhcC--C--CcEEec
Confidence 455667777665442 156677789988887642 47777774432 4555555422 2 244543
Q ss_pred ChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 413 AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 413 ~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
+..++++.||+.+..| |.+.+|++.+|+|.|...
T Consensus 228 ---~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 228 ---DTHKALLEAEFAFICS-------GTATLEAALIGTPFVLAY 261 (347)
T ss_pred ---cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEEEE
Confidence 6678999999999988 556669999999987744
No 133
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.16 E-value=0.044 Score=62.54 Aligned_cols=140 Identities=13% Similarity=0.059 Sum_probs=81.3
Q ss_pred CCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEE
Q 001646 331 KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (1038)
Q Consensus 331 ~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~f 410 (1038)
+++..+++.+|+ |-.|.+++-.++.. ....+. -...-++|.|..... ...+++...-.-.+ +|.+
T Consensus 217 pE~~~Ilvs~GG------G~dG~eLi~~~l~A-~~~l~~----l~~~~~ivtGP~MP~---~~r~~l~~~A~~~p-~i~I 281 (400)
T COG4671 217 PEGFDILVSVGG------GADGAELIETALAA-AQLLAG----LNHKWLIVTGPFMPE---AQRQKLLASAPKRP-HISI 281 (400)
T ss_pred CccceEEEecCC------ChhhHHHHHHHHHH-hhhCCC----CCcceEEEeCCCCCH---HHHHHHHHhcccCC-CeEE
Confidence 445667777772 22455443333322 222122 001235555644432 34444444322222 6999
Q ss_pred ccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccc-cccccc-------CccEEEEcC-CCHHHH
Q 001646 411 MAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI-RKYVDD-------RVNGYLFPK-ENIKAL 481 (1038)
Q Consensus 411 lG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi-~EiV~d-------G~nGlLv~~-~D~eaL 481 (1038)
.-+.+++..+++.|+.+|.-+-+. ++.|-+++|||.+.-+.... .|.... |-...+.|. -+++.|
T Consensus 282 ~~f~~~~~~ll~gA~~vVSm~GYN------TvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~L 355 (400)
T COG4671 282 FEFRNDFESLLAGARLVVSMGGYN------TVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNL 355 (400)
T ss_pred EEhhhhHHHHHHhhheeeecccch------hhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHH
Confidence 999999999999999999887443 88999999999766544332 233211 222333332 347888
Q ss_pred HHHHHHHHHc
Q 001646 482 THIILQVITN 491 (1038)
Q Consensus 482 AeAI~~LLsD 491 (1038)
|++|...+..
T Consensus 356 a~al~~~l~~ 365 (400)
T COG4671 356 ADALKAALAR 365 (400)
T ss_pred HHHHHhcccC
Confidence 8888888874
No 134
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.0052 Score=70.92 Aligned_cols=108 Identities=14% Similarity=0.198 Sum_probs=79.3
Q ss_pred hHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccc----ccccc-CccEEEE-c------CCCHHHHHH
Q 001646 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR----KYVDD-RVNGYLF-P------KENIKALTH 483 (1038)
Q Consensus 416 dV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~----EiV~d-G~nGlLv-~------~~D~eaLAe 483 (1038)
|..++...|++.|+||++|. +|.+..|.-.+|+|-|+|+..|.. |.|.+ ..-|+.+ + .+++++|++
T Consensus 493 DYeeFVRGCHLGVFPSYYEP--WGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~ 570 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEP--WGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLAS 570 (692)
T ss_pred CHHHHhccccccccccccCC--CCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHH
Confidence 56788999999999999994 999999999999999999999874 44433 2345443 2 246777888
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHH-H-HhhCHHHHHHHHHHHHHHhh
Q 001646 484 IILQVITNGKISPFARNIASIGRRS-V-KNLMALETIEGYAMLLENVL 529 (1038)
Q Consensus 484 AI~~LLsDg~l~elr~~mg~~are~-a-k~Fs~e~ia~~Y~~Lye~vL 529 (1038)
-|..+... ..++++-++.+.- . .-.+|..+-.-|.+.=.-.|
T Consensus 571 ~m~~F~~q----sRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 571 FMYEFCKQ----SRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred HHHHHHHH----HHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 88888776 5666665555432 2 33889888888876654444
No 135
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=96.99 E-value=0.0027 Score=69.69 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=30.5
Q ss_pred eEEEEcCCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 001646 146 QLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (1038)
Q Consensus 146 rIaiV~~~L----~iGGae~~v~~LAkaL~k~G~eV~V~t~~~ 184 (1038)
||++|.... ..||...++..|+++|+++|++|.|+.+..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 567777654 469999999999999999999999999865
No 136
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=96.97 E-value=0.022 Score=65.78 Aligned_cols=305 Identities=15% Similarity=0.173 Sum_probs=127.6
Q ss_pred CCCceEEEEcC-CCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEE
Q 001646 142 YRKPQLALVFP-DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGIL 220 (1038)
Q Consensus 142 ~R~prIaiV~~-~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVh 220 (1038)
.++.+|++... +-..++-..++..-+. -...++++..++..... .....+.++......+.+. ......+++
T Consensus 11 ~~~~~Ivf~~~~g~~~~dN~~~l~~~l~-~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~s~~~~~---~~~~Ak~~i 83 (369)
T PF04464_consen 11 KKKKKIVFESESGNKFSDNPKALFEYLI-KNYPDYKIYWIINKKSP---ELKPKGIKVVKFGSLKHIY---YLARAKYII 83 (369)
T ss_dssp -EEEEEEEEBTTTTBS-HHHHHHHHHHH-HH-TTSEEEEEESSGGG-------SS-EEEETTSHHHHH---HHHHEEEEE
T ss_pred ccCCEEEEEECCCCCCCCCHHHHHHHHH-hhCCCcEEEEEEcCchH---hhccCCceEEeecHHHHHH---HHHhCcEEE
Confidence 34455555554 2335555555554333 12344566665544322 2223344444333322222 223466777
Q ss_pred EcCCchhHHHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc-cccccc--cCCC
Q 001646 221 VNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-LPMMYS--AFDA 297 (1038)
Q Consensus 221 vhs~~~~~~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~-l~viyn--~vd~ 297 (1038)
+++.... . .. .....+.++|.+.||.++... ....... ..............+.+++++.. ...... +++.
T Consensus 84 ~~~~~~~-~-~~--~~~~~~~~~i~lwHG~~~K~~-g~~~~~~-~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~f~~~~ 157 (369)
T PF04464_consen 84 SDSYFPD-L-IY--FKKRKNQKYIQLWHGIPLKKI-GYDSPDN-KNYRKNYKRNYRNYDYFIVSSEFEKEIFKKAFGYPE 157 (369)
T ss_dssp ESS---T----T--S---TTSEEEE--SS--SB---GGG-S----TS-HHHHHHHTT-SEEEESSHHHHHHHHHHTT--G
T ss_pred ECCCCCc-c-cc--cccCCCcEEEEecCCCccccc-chhcccc-ccchhhhhhhccCCcEEEECCHHHHHHHHHHhccCc
Confidence 7743331 1 11 123456789999999654421 0000000 00000222234455555555444 222222 2333
Q ss_pred CCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEeccccccccccc-------HHHHHHHHHHchhhcccC
Q 001646 298 GNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLE-------HALILRALLPLFSEVSVE 370 (1038)
Q Consensus 298 ~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKg-------ldlLLeAl~~L~~k~p~~ 370 (1038)
+++.+ .|.|-...-+.. ....++.+++.++++.++.+|+++-+ +... ..+ ..+-++.+..+. ..+
T Consensus 158 ~~i~~-~G~PR~D~l~~~-~~~~~~~i~~~~~~~~~~k~ILyaPT-~R~~--~~~~~~~~~~~~~~~~~l~~~~--~~~- 229 (369)
T PF04464_consen 158 DKILV-TGYPRNDYLFNK-SKENRNRIKKKLGIDKDKKVILYAPT-WRDN--SSNEYFKFFFSDLDFEKLNFLL--KNN- 229 (369)
T ss_dssp GGEEE-S--GGGHHHHHS-TT-HHHHHHHHTT--SS-EEEEEE-----GG--G--GGSS----TT-HHHHHHHH--TTT-
T ss_pred ceEEE-eCCCeEhHHhcc-CHHHHHHHHHHhccCCCCcEEEEeec-cccc--cccccccccccccCHHHHHHHh--CCC-
Confidence 34433 232222110111 11114567788999999989999863 2221 011 112233333222 223
Q ss_pred CCCCCCEEEEEEeCCCCCchHHHHHHHHHH-cCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcC
Q 001646 371 NESNSPIKVMILSGDSTSNYSVVIEAIAHN-LHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFR 449 (1038)
Q Consensus 371 ~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~q-LgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~G 449 (1038)
+.+++-.-|. .+..... ....+ +|.+.....++.+++..||++|. + ++.++.|++.++
T Consensus 230 ------~~li~k~Hp~-------~~~~~~~~~~~~~-~i~~~~~~~~~~~ll~~aDiLIT----D---ySSi~fD~~~l~ 288 (369)
T PF04464_consen 230 ------YVLIIKPHPN-------MKKKFKDFKEDNS-NIIFVSDNEDIYDLLAAADILIT----D---YSSIIFDFLLLN 288 (369)
T ss_dssp ------EEEEE--SHH-------HHTT----TT-TT-TEEE-TT-S-HHHHHHT-SEEEE----S---S-THHHHHGGGT
T ss_pred ------cEEEEEeCch-------hhhchhhhhccCC-cEEECCCCCCHHHHHHhcCEEEE----e---chhHHHHHHHhC
Confidence 6776655322 1111111 23334 68887776799999999999985 2 567999999999
Q ss_pred CCEEE--cCCc-------ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 450 KPIIA--PDLS-------NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 450 kPVIa--Tdvg-------Gi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
+|||. .|.. ...++ .+...|-++ .+.++|.++|..++++
T Consensus 289 KPiify~~D~~~Y~~~rg~~~~~-~~~~pg~~~--~~~~eL~~~i~~~~~~ 336 (369)
T PF04464_consen 289 KPIIFYQPDLEEYEKERGFYFDY-EEDLPGPIV--YNFEELIEAIENIIEN 336 (369)
T ss_dssp --EEEE-TTTTTTTTTSSBSS-T-TTSSSS-EE--SSHHHHHHHHTTHHHH
T ss_pred CCEEEEeccHHHHhhccCCCCch-HhhCCCcee--CCHHHHHHHHHhhhhC
Confidence 99995 3432 11221 222335555 4799999999999987
No 137
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=96.88 E-value=5.1e-05 Score=77.58 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=60.2
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccc--------ccccccCccEEEEcC--C
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI--------RKYVDDRVNGYLFPK--E 476 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi--------~EiV~dG~nGlLv~~--~ 476 (1038)
+|.++++.+++.++++.||++|.-+ + +.++.|++++|+|.|.-+.++. ...+.+...|..+.. .
T Consensus 56 ~v~~~~~~~~m~~~m~~aDlvIs~a---G---~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~ 129 (167)
T PF04101_consen 56 NVKVFGFVDNMAELMAAADLVISHA---G---AGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESEL 129 (167)
T ss_dssp CCEEECSSSSHHHHHHHHSEEEECS-------CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-
T ss_pred cEEEEechhhHHHHHHHcCEEEeCC---C---ccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccC
Confidence 6999999999999999999888755 2 6799999999999887666652 222322222333332 2
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 001646 477 NIKALTHIILQVITNGKISPFARNIASI 504 (1038)
Q Consensus 477 D~eaLAeAI~~LLsDg~l~elr~~mg~~ 504 (1038)
+++.|.++|..++++ +.....+..+
T Consensus 130 ~~~~L~~~i~~l~~~---~~~~~~~~~~ 154 (167)
T PF04101_consen 130 NPEELAEAIEELLSD---PEKLKEMAKA 154 (167)
T ss_dssp SCCCHHHHHHCHCCC---HH-SHHHCCC
T ss_pred CHHHHHHHHHHHHcC---cHHHHHHHHH
Confidence 368899999999998 6665555544
No 138
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=96.74 E-value=0.026 Score=59.63 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=68.1
Q ss_pred eEEEEcCC---CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchh------------HHHH
Q 001646 146 QLALVFPD---LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGRE------------KASF 210 (1038)
Q Consensus 146 rIaiV~~~---L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rk------------l~~l 210 (1038)
+|++|-.- -..||.|..+.+|+..|.+.|++|+|+|..+.......+-.|+.+..++.... +...
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~~a 82 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLLHA 82 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHHHH
Confidence 56666553 35799999999999999999999999998764433333445555544443321 0111
Q ss_pred h---hh--cCCcEEEEcCCchhHHHHHHHhC-CCCCCCEEEEEeC
Q 001646 211 V---NW--LNYDGILVNSLEAKVVISNIMQE-PFKSLPLVWTIHE 249 (1038)
Q Consensus 211 I---~~--~kpDIVhvhs~~~~~~la~La~~-~~~gIPvI~tiHg 249 (1038)
+ +. .++|+|+++.....+++..+... +..+.|+++++||
T Consensus 83 l~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DG 127 (185)
T PF09314_consen 83 LRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDG 127 (185)
T ss_pred HHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCc
Confidence 2 11 25789999988743455555532 2346799999998
No 139
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=96.36 E-value=0.76 Score=51.20 Aligned_cols=299 Identities=11% Similarity=0.091 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhh--hcCceEEEcccchhHHHHhhh-cCCcEEEEcCCchhH------
Q 001646 158 PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWR--NIGVPVAILQTGREKASFVNW-LNYDGILVNSLEAKV------ 228 (1038)
Q Consensus 158 Gae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e--~~gI~v~~l~~~rkl~~lI~~-~kpDIVhvhs~~~~~------ 228 (1038)
|+.+....+-..+.+.|++++++...+........ ...+.+..+.+ ..+.+.++. ..+||+++++..+..
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~~~~~si~k~~~-~e~de~v~~vN~yDI~m~nSvPa~~vqE~~i 80 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHDSKSFSIPKYLA-KEYDETVKKVNDYDIVMFNSVPATKVQEAII 80 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS-TTTEEEE-TT-THHHHHHHHHTSSSEEEEEE--BTTS-HHHH
T ss_pred CccccHHHHHHHHHhcCCeeEEEEecccccCCccccccceeeeehhhH-HHHHHHHHHhhccCEEEEecccCchHHHHHH
Confidence 78888899999999999999999887643221111 11222333322 122333333 389999999876521
Q ss_pred -HHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCc---cc-cccccCCC-----C
Q 001646 229 -VISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV---LP-MMYSAFDA-----G 298 (1038)
Q Consensus 229 -~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~---l~-viyn~vd~-----~ 298 (1038)
.+-.++......+++|...|+..... +.+ +.......+.++.+.--+.. .. ++...++. +
T Consensus 81 NnY~kii~~Ik~~ik~V~~~Hdh~~ls-I~r---------n~~le~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~ 150 (355)
T PF11440_consen 81 NNYEKIIKKIKPSIKVVGFMHDHNKLS-IDR---------NPYLEGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFD 150 (355)
T ss_dssp HHHHHHHHCS-TTSEEEEEE---SHHH-HTT---------BSSHHHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS
T ss_pred HHHHHHHHhccccceeEEEeeccceee-ccc---------cccHHHHHHhhcEEEeccccchHHHHHHHhhccccCchhh
Confidence 22334444344667788888622210 111 11122334555543322111 11 11011111 2
Q ss_pred CEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEE---EEEecccccccccccHHHHHHHHHHchhhcccCCCCCC
Q 001646 299 NYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVI---AIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNS 375 (1038)
Q Consensus 299 ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vI---L~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~ 375 (1038)
++...|- . +...++..-...|..+-.....+.. +++|+.... ||+..+++.-....+. +.
T Consensus 151 ~i~~~p~----v--~nfqpp~~i~~~Rstywkd~se~nmnv~~yigR~Tt~----kG~~~mfD~h~~~lK~-~~------ 213 (355)
T PF11440_consen 151 RIKKFPM----V--FNFQPPMDINKYRSTYWKDVSEKNMNVNRYIGRQTTW----KGPRRMFDLHEKILKP-AG------ 213 (355)
T ss_dssp -----------E--EE----B-HHHHHHHH---GGGSEEEEEEEE--SSGG----G-HHHHHHHHHHTTTT-TT------
T ss_pred hhhhcce----e--eecCCcccHHHHHHHHhhhhHhhhcccceeeeeeeee----cCcHHHhhhHHHhcCC-cc------
Confidence 2333331 0 1111222223455555544444444 899944444 8998889888876654 44
Q ss_pred CEEEEEEe-CCCCCchHHHHHHHHHH--------------cCC-CCceEEEccC-h-hhHHHHHHhcCEEEEccc-----
Q 001646 376 PIKVMILS-GDSTSNYSVVIEAIAHN--------------LHY-PLGVVKHMAA-E-GDVDSVLNTADVVIYGSF----- 432 (1038)
Q Consensus 376 ~vkLVIVG-G~~~e~Y~~~LeeLa~q--------------LgL-~d~~V~flG~-~-edV~~lLaaADIfVlPS~----- 432 (1038)
++-++-| .... +.-.+.++ ..+ ++..|.++|. + +++.+.++.+-..+.-+.
T Consensus 214 -~~t~~~GierS~-----A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y 287 (355)
T PF11440_consen 214 -FKTIMEGIERSP-----AKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKY 287 (355)
T ss_dssp --EEEEE---SST-----HHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG
T ss_pred -hhHHhhhhhcCC-----ceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHH
Confidence 7888888 3332 11111221 111 2335778884 3 888888888876665552
Q ss_pred CCcCCcCHHHHHHHHcCC-CEEEcCCccccc-------ccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 433 LEEQTFPEILVKALCFRK-PIIAPDLSNIRK-------YVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 433 ~EeqGFPlvLLEAMA~Gk-PVIaTdvgGi~E-------iV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
.+. .+-.+-+|..|||. ||.-...|..-. ++......+.++..|.++-.+.|.++.++
T Consensus 288 ~~r-~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 288 LQR-SMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp -SS----HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred HHh-hhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHHHHHHHHHHhcc
Confidence 222 46789999999996 777666554333 34444556788888999888888888766
No 140
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.04 E-value=0.2 Score=60.56 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=123.7
Q ss_pred HHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCC
Q 001646 325 RVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHY 403 (1038)
Q Consensus 325 Reklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL 403 (1038)
|.+++++++.+++..+. .+. |--...++.+..+.+..|+ -.|++.- ..-. ...++..++++|+
T Consensus 750 r~~y~Lp~d~vvf~~FN-qLy-----KidP~~l~~W~~ILk~VPn-------S~LwllrfPa~g---e~rf~ty~~~~Gl 813 (966)
T KOG4626|consen 750 RSQYGLPEDAVVFCNFN-QLY-----KIDPSTLQMWANILKRVPN-------SVLWLLRFPAVG---EQRFRTYAEQLGL 813 (966)
T ss_pred CCCCCCCCCeEEEeech-hhh-----cCCHHHHHHHHHHHHhCCc-------ceeEEEeccccc---hHHHHHHHHHhCC
Confidence 56789998886666666 443 3334568999999988888 6777776 2222 1678889999999
Q ss_pred CCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccc------ccCccEEEEcC
Q 001646 404 PLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYV------DDRVNGYLFPK 475 (1038)
Q Consensus 404 ~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV------~dG~nGlLv~~ 475 (1038)
+.++|.|..-. +|=..-.+.+||.+=+....+ -.+-+|.+-+|+|+|+-+......-| .-|. |-++-
T Consensus 814 ~p~riifs~va~k~eHvrr~~LaDv~LDTplcnG---hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl-~hlia- 888 (966)
T KOG4626|consen 814 EPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNG---HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGL-GHLIA- 888 (966)
T ss_pred CccceeeccccchHHHHHhhhhhhhcccCcCcCC---cccchhhhccCCceeecccHHHHHHHHHHHHHHccc-HHHHh-
Confidence 98899998844 555556778999987776652 34567889999999986543222111 1122 22332
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-H--hhCHHHHHHHHHHHHHHhhc
Q 001646 476 ENIKALTHIILQVITNGKISPFARNIASIGRRSV-K--NLMALETIEGYAMLLENVLK 530 (1038)
Q Consensus 476 ~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k--~Fs~e~ia~~Y~~Lye~vLk 530 (1038)
.+-++..+.-.++-.| .+..+++...-+... . -|+....+...+++|-++-+
T Consensus 889 k~~eEY~~iaV~Latd---~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~ 943 (966)
T KOG4626|consen 889 KNREEYVQIAVRLATD---KEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWK 943 (966)
T ss_pred hhHHHHHHHHHHhhcC---HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHH
Confidence 4678888888888888 777776655544433 1 18888888888877766543
No 141
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.83 E-value=5 Score=47.97 Aligned_cols=95 Identities=11% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCCceEEEcc---ChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc----cccccc
Q 001646 392 VVIEAIAHNLHYPLGVVKHMA---AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYV 464 (1038)
Q Consensus 392 ~~LeeLa~qLgL~d~~V~flG---~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg----Gi~EiV 464 (1038)
...+++.+.+.-+. +++++. ...++..+++.||++|-.-.+ .++=|++.|+|+|+-... |.-+.+
T Consensus 294 ~~~~~l~~~~~~~~-~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH-------a~I~a~~~gvP~i~i~Y~~K~~~~~~~l 365 (426)
T PRK10017 294 MVALNLRQHVSDPA-RYHVVMDELNDLEMGKILGACELTVGTRLH-------SAIISMNFGTPAIAINYEHKSAGIMQQL 365 (426)
T ss_pred HHHHHHHHhccccc-ceeEecCCCChHHHHHHHhhCCEEEEecch-------HHHHHHHcCCCEEEeeehHHHHHHHHHc
Confidence 44566667665443 344332 235777999999998765543 577899999999985443 222333
Q ss_pred ccCccEEEEcC--CCHHHHHHHHHHHHHcCCCcHHHH
Q 001646 465 DDRVNGYLFPK--ENIKALTHIILQVITNGKISPFAR 499 (1038)
Q Consensus 465 ~dG~nGlLv~~--~D~eaLAeAI~~LLsDg~l~elr~ 499 (1038)
. ...++++. -+.++|.+.+.+++++ .+..+
T Consensus 366 g--~~~~~~~~~~l~~~~Li~~v~~~~~~---r~~~~ 397 (426)
T PRK10017 366 G--LPEMAIDIRHLLDGSLQAMVADTLGQ---LPALN 397 (426)
T ss_pred C--CccEEechhhCCHHHHHHHHHHHHhC---HHHHH
Confidence 2 22343433 3578899999999998 55544
No 142
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.00 E-value=3.3 Score=47.44 Aligned_cols=243 Identities=15% Similarity=0.136 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHHHc-CCeEEEEEcCCCcchhhhhhc--CceEEEcccchhHHHHhhhcCCcEEEEcCCchhHHHHHHH
Q 001646 158 PQQLQMVTIAIALREI-GYAIQVYSLEDGRAHEVWRNI--GVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIM 234 (1038)
Q Consensus 158 Gae~~v~~LAkaL~k~-G~eV~V~t~~~g~~~~~~e~~--gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~~~~la~La 234 (1038)
|.+.+...+|++|... ++++..+.... .+..+ ................+....||+|+....... .....+
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~-----~~~~lp~~~~~~~~~~~~~~~~~~~~~~pdLiIsaGr~t~-~~~~~l 75 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRR-----PWRWLPRLLPAPLRALLKPFSPALEPPWPDLIISAGRRTA-PAALAL 75 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEecccc-----chhhccccccchHHHhhhcccccccCCCCcEEEECCCchH-HHHHHH
Confidence 6788899999999873 77777776543 11111 000000000011112234467999999888773 333334
Q ss_pred hCCCCC-CCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccccccccC-CCCCEEEcCCCCCCccc
Q 001646 235 QEPFKS-LPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAF-DAGNYYVIPGSPAKAWE 312 (1038)
Q Consensus 235 ~~~~~g-IPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~viyn~v-d~~ki~VIPgsgVD~~~ 312 (1038)
.+...+ +++|+..+- . ... ...|.++.|.+. .. ...|+....+.+-.+
T Consensus 76 ~r~~gg~~~~V~i~~P---~-----~~~--------------~~FDlvi~p~HD------~~~~~~Nvl~t~ga~~~i-- 125 (311)
T PF06258_consen 76 RRASGGRTKTVQIMDP---R-----LPP--------------RPFDLVIVPEHD------RLPRGPNVLPTLGAPNRI-- 125 (311)
T ss_pred HHHcCCCceEEEEcCC---C-----CCc--------------cccCEEEECccc------CcCCCCceEecccCCCcC--
Confidence 333333 366655441 0 111 122344444222 22 234555554422111
Q ss_pred cccccchh----hHHHHHhhCCCCCCEEEEEEeccc-ccccccccHH---HHHHHHHHchhhcccCCCCCCCEEEEEEeC
Q 001646 313 ADTNMDLY----NDTVRVKMGFKPDDLVIAIVGTQF-MYRGLWLEHA---LILRALLPLFSEVSVENESNSPIKVMILSG 384 (1038)
Q Consensus 313 f~~~~~~~----k~~lReklgi~~d~~vIL~VGsrl-~~~KGiKgld---lLLeAl~~L~~k~p~~~~~~~~vkLVIVGG 384 (1038)
.+.. .......++..+.+.+.+.+|+-. .+. .+.+ .+++.+..+.+.+. ..++|...
T Consensus 126 ----~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~---~~~~~~~~l~~~l~~~~~~~~--------~~~~vttS 190 (311)
T PF06258_consen 126 ----TPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYR---WDEEDAERLLDQLAALAAAYG--------GSLLVTTS 190 (311)
T ss_pred ----CHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcc---cCHHHHHHHHHHHHHHHHhCC--------CeEEEEcC
Confidence 1111 223334555556666777777532 222 3444 56666666666543 47888773
Q ss_pred CCCCchHHHHHHHHHHcCCCCceEEEcc-Ch-hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc
Q 001646 385 DSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN 459 (1038)
Q Consensus 385 ~~~e~Y~~~LeeLa~qLgL~d~~V~flG-~~-edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG 459 (1038)
.-+.. +....+.+.++-.. .+.+.. .. +-+..+|+.||.++.+.-.. .-+.||.+.|+||..-..++
T Consensus 191 RRTp~--~~~~~L~~~~~~~~-~~~~~~~~~~nPy~~~La~ad~i~VT~DSv-----SMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 191 RRTPP--EAEAALRELLKDNP-GVYIWDGTGENPYLGFLAAADAIVVTEDSV-----SMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CCCcH--HHHHHHHHhhcCCC-ceEEecCCCCCcHHHHHHhCCEEEEcCccH-----HHHHHHHHcCCCEEEecCCC
Confidence 33211 23333334333333 463433 22 45788999999999998433 46789999999998887765
No 143
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.70 E-value=2.2 Score=47.44 Aligned_cols=253 Identities=13% Similarity=0.092 Sum_probs=127.2
Q ss_pred CChHHHHHHHHHHHHHHcCCeEEEEEcCC-CcchhhhhhcCceEEEcccchhHHH-Hhh---hcCCcEEEEcCCchhHHH
Q 001646 156 IDPQQLQMVTIAIALREIGYAIQVYSLED-GRAHEVWRNIGVPVAILQTGREKAS-FVN---WLNYDGILVNSLEAKVVI 230 (1038)
Q Consensus 156 iGGae~~v~~LAkaL~k~G~eV~V~t~~~-g~~~~~~e~~gI~v~~l~~~rkl~~-lI~---~~kpDIVhvhs~~~~~~l 230 (1038)
..|...++..+|+.|..--|.+.++.... +.....|-.+ +.+...+.+.. .+. ...||+++..+-.. ..+
T Consensus 10 RtGnt~QaiaLa~~l~r~eyttk~l~~~~l~~lP~~wl~~----yp~~~~~~l~~~~~~r~p~~~Pdl~I~aGrrt-a~l 84 (329)
T COG3660 10 RTGNTHQAIALAEQLTRSEYTTKLLEYNNLAKLPNFWLAY----YPIHILRELFGPRLSRKPEQRPDLIITAGRRT-APL 84 (329)
T ss_pred CCccHHHHHHHHHHhhccceEEEEeeccccccCchhhhhc----CccHhHHHhhcCccccCccCCCceEEecccch-hHH
Confidence 56888999999999987556666665432 2233333221 11111111111 111 24599999888777 355
Q ss_pred HHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhchhHHHHHHHHHHHhcceEeccCCccccccccCCCCCEEEcCCCCCCc
Q 001646 231 SNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKA 310 (1038)
Q Consensus 231 a~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~d~lIs~~~~~~~~a~~vvfps~~l~viyn~vd~~ki~VIPgsgVD~ 310 (1038)
+..+.+++.++.+|-..| ..+. .+..|.++..+..... + ...+-.|+..|.|++-.+
T Consensus 85 ~~~lkk~~~~~~vVqI~~-Prlp-------~~~fDlvivp~HD~~~-~--------------~s~~~~Nilpi~Gs~h~V 141 (329)
T COG3660 85 AFYLKKKFGGIKVVQIQD-PRLP-------YNHFDLVIVPYHDWRE-E--------------LSDQGPNILPINGSPHNV 141 (329)
T ss_pred HHHHHHhcCCceEEEeeC-CCCC-------cccceEEeccchhhhh-h--------------hhccCCceeeccCCCCcc
Confidence 555655566644444333 2111 1222322222211111 0 011235666676665544
Q ss_pred cccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCc
Q 001646 311 WEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSN 389 (1038)
Q Consensus 311 ~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~ 389 (1038)
. .......++. -+.++..+..++-++||+.... -...-+.+.+-...+.+.+.+ ....+++-- -...
T Consensus 142 t--~~~lAa~~e~-~~~~~p~~rq~vAVlVGg~nk~--f~~~~d~a~q~~~~l~k~l~~-----~g~~~lisfSRRTp-- 209 (329)
T COG3660 142 T--SQRLAALREA-FKHLLPLPRQRVAVLVGGNNKA--FVFQEDKAHQFASLLVKILEN-----QGGSFLISFSRRTP-- 209 (329)
T ss_pred c--HHHhhhhHHH-HHhhCCCCCceEEEEecCCCCC--CccCHHHHHHHHHHHHHHHHh-----CCceEEEEeecCCc--
Confidence 1 1111111222 3344455677888888854322 112233444444444333321 124555544 2222
Q ss_pred hHHHHHHHHHH-cCCCCceEEEccCh---hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 390 YSVVIEAIAHN-LHYPLGVVKHMAAE---GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 390 Y~~~LeeLa~q-LgL~d~~V~flG~~---edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
+..+.+... +.-.. -+.+-+.. +-...+|++||.+|.+-..- .-.-||.+.|+||-+..
T Consensus 210 --~~~~s~l~~~l~s~~-~i~w~~~d~g~NPY~~~La~Adyii~TaDSi-----nM~sEAasTgkPv~~~~ 272 (329)
T COG3660 210 --DTVKSILKNNLNSSP-GIVWNNEDTGYNPYIDMLAAADYIISTADSI-----NMCSEAASTGKPVFILE 272 (329)
T ss_pred --HHHHHHHHhccccCc-eeEeCCCCCCCCchHHHHhhcceEEEecchh-----hhhHHHhccCCCeEEEe
Confidence 455555554 33333 34444432 34677899999999987333 35679999999997644
No 144
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.34 E-value=5 Score=44.46 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEE
Q 001646 352 EHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIY 429 (1038)
Q Consensus 352 gldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVl 429 (1038)
..+...+.+..+.++ + ++++++|++.+ .+..+++.+..+..+ .+.+.|.. .++..+++.||++|.
T Consensus 138 ~~~~~~~l~~~l~~~--~-------~~ivl~g~~~e---~~~~~~i~~~~~~~~-~~~~~~~~~l~e~~~li~~~~l~I~ 204 (279)
T cd03789 138 PAERFAALADRLLAR--G-------ARVVLTGGPAE---RELAEEIAAALGGPR-VVNLAGKTSLRELAALLARADLVVT 204 (279)
T ss_pred CHHHHHHHHHHHHHC--C-------CEEEEEechhh---HHHHHHHHHhcCCCc-cccCcCCCCHHHHHHHHHhCCEEEe
Confidence 455556777766654 3 78889996654 244555555443223 35566643 889999999999998
Q ss_pred cccCCcCCcCHHHHHHHHcCCCEEEcCCcccc
Q 001646 430 GSFLEEQTFPEILVKALCFRKPIIAPDLSNIR 461 (1038)
Q Consensus 430 PS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~ 461 (1038)
+- . | ++--|.|+|+|+|+--.+..+
T Consensus 205 ~D---s---g-~~HlA~a~~~p~i~l~g~~~~ 229 (279)
T cd03789 205 ND---S---G-PMHLAAALGTPTVALFGPTDP 229 (279)
T ss_pred eC---C---H-HHHHHHHcCCCEEEEECCCCc
Confidence 85 1 2 444457999999885444333
No 145
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=94.15 E-value=1.6 Score=55.27 Aligned_cols=157 Identities=10% Similarity=0.065 Sum_probs=108.7
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCC--ch---HHHHHHHHHH----c
Q 001646 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTS--NY---SVVIEAIAHN----L 401 (1038)
Q Consensus 332 ~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e--~Y---~~~LeeLa~q----L 401 (1038)
.++.+|+.+- ++...||+..- +.|+.++..++|. -..++.++.+. +...+ .| ...+...+.+ .
T Consensus 274 ~g~klilgvD-~~d~~kg~~~K---l~a~e~~L~~~pe---~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f 346 (732)
T KOG1050|consen 274 KGKKLILGVD-RLDSIKGIQLK---LLAFEQFLEEYPE---WIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKF 346 (732)
T ss_pred cCCceEeccc-ccccccCchHH---HHHHHHHHHhChh---hhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhcc
Confidence 3566777777 88887555544 8888888888876 34456666666 33321 11 2222222221 1
Q ss_pred CCCC-ceEEEcc-Ch--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcC----CCEEEcCCcccccccccCccEEEE
Q 001646 402 HYPL-GVVKHMA-AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFR----KPIIAPDLSNIRKYVDDRVNGYLF 473 (1038)
Q Consensus 402 gL~d-~~V~flG-~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~G----kPVIaTdvgGi~EiV~dG~nGlLv 473 (1038)
+-.. ..|.++- .. .++.+++..+|+.+..+..+ |..++.+|+.+|. .+.|.+...|....+++ ...++
T Consensus 347 ~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rd--Gmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d--~aivv 422 (732)
T KOG1050|consen 347 GSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRD--GMNLVFLEYILCQENKKSVLVLSEFIGDDTTLED--AAIVV 422 (732)
T ss_pred CCcccceEEEeeccCCHHHHhhhHHhhhheeeccccc--ccchhhhHHHHhhcccCCceEEeeeccccccccc--cCEEE
Confidence 1111 1233333 22 67889999999999999998 8999999999984 67888888888888876 35788
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 001646 474 PKENIKALTHIILQVITNGKISPFARNIA 502 (1038)
Q Consensus 474 ~~~D~eaLAeAI~~LLsDg~l~elr~~mg 502 (1038)
.+.|.+.++.+|...++. ++...++.
T Consensus 423 npw~~~~~~~~i~~al~~---s~~e~~~r 448 (732)
T KOG1050|consen 423 NPWDGDEFAILISKALTM---SDEERELR 448 (732)
T ss_pred CCcchHHHHHHHHHHhhc---CHHHHhhc
Confidence 899999999999999998 66555443
No 146
>PLN02670 transferase, transferring glycosyl groups
Probab=93.44 E-value=0.92 Score=54.80 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=68.8
Q ss_pred EEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcC------CC
Q 001646 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPK------EN 477 (1038)
Q Consensus 408 V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~dG~nGlLv~~------~D 477 (1038)
+.+.++..+ .++|+...+-.+-| +.| -++++||+++|+|+|+-+..+ ....+.+-..|+.++. -+
T Consensus 341 ~vv~~W~PQ-~~IL~H~~v~~Fvt---HcG-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQ-VKILSHESVGGFLT---HCG-WNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCH-HHHhcCcccceeee---cCC-cchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 566677643 33676666655555 213 468899999999999976543 3344444456777653 25
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHH
Q 001646 478 IKALTHIILQVITNGKISPFARNIASIGRRSVKNL----MALETIEGYAMLLEN 527 (1038)
Q Consensus 478 ~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~F----s~e~ia~~Y~~Lye~ 527 (1038)
.++++++|.+++.+ ++ -.++.+++++..+.+ ...+.++.+.+.+.+
T Consensus 416 ~e~i~~av~~vm~~---~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 416 SDSVAESVRLAMVD---DA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHHHHHHhcC---cc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 89999999999987 42 234555555555444 344444444444443
No 147
>PLN02448 UDP-glycosyltransferase family protein
Probab=92.93 E-value=1.3 Score=53.20 Aligned_cols=130 Identities=10% Similarity=0.040 Sum_probs=76.0
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEE
Q 001646 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (1038)
Q Consensus 332 ~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~f 410 (1038)
+...+.+.+|+..... ...+..++++++... ..++++. ++. ..+.+.. .+ ++.+
T Consensus 273 ~~~vvyvsfGs~~~~~--~~~~~~~~~~l~~~~------------~~~lw~~~~~~-----~~~~~~~-----~~-~~~v 327 (459)
T PLN02448 273 EGSVLYVSLGSFLSVS--SAQMDEIAAGLRDSG------------VRFLWVARGEA-----SRLKEIC-----GD-MGLV 327 (459)
T ss_pred CCceEEEeecccccCC--HHHHHHHHHHHHhCC------------CCEEEEEcCch-----hhHhHhc-----cC-CEEE
Confidence 3457788888654321 123444455555432 4566655 331 1222222 22 5677
Q ss_pred ccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----cccccccC-ccEEEEc-------CCCH
Q 001646 411 MAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDR-VNGYLFP-------KENI 478 (1038)
Q Consensus 411 lG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~dG-~nGlLv~-------~~D~ 478 (1038)
.++.. -.++|...++-++-+ +.| -.+++||+++|+|+|+-+..+ ....+.+. ..|+-+. .-+.
T Consensus 328 ~~w~p-Q~~iL~h~~v~~fvt---HgG-~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~ 402 (459)
T PLN02448 328 VPWCD-QLKVLCHSSVGGFWT---HCG-WNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGR 402 (459)
T ss_pred eccCC-HHHHhccCccceEEe---cCc-hhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcH
Confidence 77763 344677777744444 213 458899999999999876543 33444441 2355553 1367
Q ss_pred HHHHHHHHHHHHc
Q 001646 479 KALTHIILQVITN 491 (1038)
Q Consensus 479 eaLAeAI~~LLsD 491 (1038)
+++++++.+++.+
T Consensus 403 ~~l~~av~~vl~~ 415 (459)
T PLN02448 403 EEIAELVKRFMDL 415 (459)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999986
No 148
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=92.21 E-value=0.8 Score=57.49 Aligned_cols=140 Identities=12% Similarity=0.092 Sum_probs=89.7
Q ss_pred CCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHH----HHHHHHHHcCCC
Q 001646 330 FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSV----VIEAIAHNLHYP 404 (1038)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~----~LeeLa~qLgL~ 404 (1038)
+.++..+++++= |+..- |...+.+.=+..+.....+ +..+.+.+++.| ........+ .+...++..+..
T Consensus 483 ~~p~~lfd~~~k-RiheY---KRq~Lnl~~i~~ly~~i~~--d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~ 556 (750)
T COG0058 483 VDPNALFDGQAR-RIHEY---KRQLLNLLDIERLYRILKE--DWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNK 556 (750)
T ss_pred cCCCcceeeeeh-hhhhh---hhhHHhHhhHHHHHHHHhc--CCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhccc
Confidence 456677777776 55443 6665554444333332211 233447777777 222222223 333444444443
Q ss_pred CceEEEcc-Ch-hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccc--cCccEEEEcCC
Q 001646 405 LGVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVD--DRVNGYLFPKE 476 (1038)
Q Consensus 405 d~~V~flG-~~-edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~--dG~nGlLv~~~ 476 (1038)
. +|.|+. +. +-...++.+|||-...|...-+..|..=|-||..|.+.|+|--|...|+.+ ++.||+++-..
T Consensus 557 l-kVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~ 631 (750)
T COG0058 557 L-KVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGET 631 (750)
T ss_pred c-eEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCc
Confidence 3 566665 44 445668899999998885432357888899999999999999999999986 88999999753
No 149
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=92.01 E-value=25 Score=40.39 Aligned_cols=112 Identities=11% Similarity=0.135 Sum_probs=66.5
Q ss_pred HHHhhCCC-CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcC
Q 001646 324 VRVKMGFK-PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLH 402 (1038)
Q Consensus 324 lReklgi~-~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLg 402 (1038)
....++.. .+..+++..|+.....|-| ..+...+.+..|.+. . ++++++||+.+. +..+++++.++
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~W-p~e~~a~l~~~l~~~--~-------~~vvl~Gg~~e~---~~~~~i~~~~~ 236 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRW-PHYHYAELAQQLIDE--G-------YQVVLFGSAKDH---EAGNEILAALN 236 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCC-CHHHHHHHHHHHHHC--C-------CeEEEEeCHHhH---HHHHHHHHhcc
Confidence 34444543 3456667777554334444 333344555454432 2 688899977642 33444444332
Q ss_pred CC--CceEEEccC--hhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEc
Q 001646 403 YP--LGVVKHMAA--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (1038)
Q Consensus 403 L~--d~~V~flG~--~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaT 455 (1038)
-. ...+.+.|. ..++..+++.||++|-.- ...+-=|-|.|+|+|+-
T Consensus 237 ~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nD-------TGp~HlAaA~g~P~val 286 (348)
T PRK10916 237 TEQQAWCRNLAGETQLEQAVILIAACKAIVTND-------SGLMHVAAALNRPLVAL 286 (348)
T ss_pred cccccceeeccCCCCHHHHHHHHHhCCEEEecC-------ChHHHHHHHhCCCEEEE
Confidence 11 102456674 388999999999999775 23556688999999974
No 150
>PLN02210 UDP-glucosyl transferase
Probab=91.67 E-value=3.3 Score=49.95 Aligned_cols=110 Identities=9% Similarity=0.073 Sum_probs=65.2
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----ccccccc-CccEEEEcC------
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLFPK------ 475 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~d-G~nGlLv~~------ 475 (1038)
+..+.++..+. .+|+.+.+-++-+ +.|+ .+++||+++|+|+|+-+..+ ....+.+ -..|+.+..
T Consensus 325 ~g~v~~w~PQ~-~iL~h~~vg~Fit---H~G~-nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~ 399 (456)
T PLN02210 325 QGVVLEWSPQE-KILSHMAISCFVT---HCGW-NSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGE 399 (456)
T ss_pred CeEEEecCCHH-HHhcCcCcCeEEe---eCCc-ccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCc
Confidence 34556776443 4788887544444 2144 47889999999999965543 3344444 345766642
Q ss_pred CCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHh-hCHHHHHHHH
Q 001646 476 ENIKALTHIILQVITNGK---ISPFARNIASIGRRSVKN-LMALETIEGY 521 (1038)
Q Consensus 476 ~D~eaLAeAI~~LLsDg~---l~elr~~mg~~are~ak~-Fs~e~ia~~Y 521 (1038)
-+.+++++++.+++.++. +....+++++.+++.+.+ =+..+..+.+
T Consensus 400 ~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~ 449 (456)
T PLN02210 400 LKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLF 449 (456)
T ss_pred CCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 367899999999997711 112233455555555533 3333333333
No 151
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=91.58 E-value=1.5 Score=52.83 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=53.4
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCC--CHHH
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE--NIKA 480 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~dG~nGlLv~~~--D~ea 480 (1038)
++.+..+..+ .++|+...+-++-+ . |--.+++||+.+|+|+|+-+.-| ....+.+...|...+.. +.++
T Consensus 324 n~~~~~W~PQ-~~lL~hp~v~~fit---H-gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~ 398 (500)
T PF00201_consen 324 NVLIVKWLPQ-NDLLAHPRVKLFIT---H-GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEE 398 (500)
T ss_dssp TEEEESS--H-HHHHTSTTEEEEEE---S---HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHH
T ss_pred eEEEeccccc-hhhhhcccceeeee---c-cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHH
Confidence 6888888754 46787666655555 2 33578999999999999976543 33444444458877754 4688
Q ss_pred HHHHHHHHHHc
Q 001646 481 LTHIILQVITN 491 (1038)
Q Consensus 481 LAeAI~~LLsD 491 (1038)
+.++|.++++|
T Consensus 399 l~~ai~~vl~~ 409 (500)
T PF00201_consen 399 LRAAIREVLEN 409 (500)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhh
Confidence 99999999999
No 152
>PLN02562 UDP-glycosyltransferase
Probab=90.82 E-value=4.9 Score=48.35 Aligned_cols=85 Identities=15% Similarity=0.062 Sum_probs=57.3
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc----ccccccccC-ccEEEEcCCCHHHH
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDR-VNGYLFPKENIKAL 481 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg----Gi~EiV~dG-~nGlLv~~~D~eaL 481 (1038)
++.+.++. .-..+|+..++-++-+ +.| -.+++||+.+|+|+|+-+.. .....+.+. ..|+-+..-+.+++
T Consensus 329 ~~~v~~w~-PQ~~iL~h~~v~~fvt---H~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l 403 (448)
T PLN02562 329 QGKVVSWA-PQLEVLKHQAVGCYLT---HCG-WNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEV 403 (448)
T ss_pred CEEEEecC-CHHHHhCCCccceEEe---cCc-chhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHH
Confidence 57777776 3344676666655545 213 46889999999999986544 334445432 34666655678999
Q ss_pred HHHHHHHHHcCCCcHHHH
Q 001646 482 THIILQVITNGKISPFAR 499 (1038)
Q Consensus 482 AeAI~~LLsDg~l~elr~ 499 (1038)
+++|.+++.+ ++.++
T Consensus 404 ~~~v~~~l~~---~~~r~ 418 (448)
T PLN02562 404 EEGLRKVMED---SGMGE 418 (448)
T ss_pred HHHHHHHhCC---HHHHH
Confidence 9999999988 55444
No 153
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=90.75 E-value=4 Score=49.46 Aligned_cols=114 Identities=9% Similarity=0.116 Sum_probs=63.4
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc----cccccccc-CccEEEEcC-----C
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDD-RVNGYLFPK-----E 476 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg----Gi~EiV~d-G~nGlLv~~-----~ 476 (1038)
.+.+.++..+ ..+|....+-++-+ +.|+ .+++||+++|+|+|+-+.. .....+.+ -..|+-+.. -
T Consensus 344 g~~v~~w~PQ-~~vL~h~~v~~fvt---H~G~-nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~ 418 (477)
T PLN02863 344 GLVIRGWAPQ-VAILSHRAVGAFLT---HCGW-NSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVP 418 (477)
T ss_pred CEEecCCCCH-HHHhcCCCcCeEEe---cCCc-hHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCc
Confidence 4777788754 55777644433333 2133 5888999999999986544 33344433 245665521 2
Q ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH
Q 001646 477 NIKALTHIILQVITNG-KISPFARNIASIGRRSVKN-LMALETIEGYAMLL 525 (1038)
Q Consensus 477 D~eaLAeAI~~LLsDg-~l~elr~~mg~~are~ak~-Fs~e~ia~~Y~~Ly 525 (1038)
+.+++++++.+++.+| .+....+++++.+++.+.+ =+..+..+.+.+.+
T Consensus 419 ~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i 469 (477)
T PLN02863 419 DSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHV 469 (477)
T ss_pred CHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 5789999999988431 1122222444444444432 23444444444443
No 154
>PLN03004 UDP-glycosyltransferase
Probab=90.27 E-value=2.4 Score=51.06 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=56.3
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc----cccccccc-CccEEEEcC-----C
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDD-RVNGYLFPK-----E 476 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg----Gi~EiV~d-G~nGlLv~~-----~ 476 (1038)
.+.+.++..+. ++|+.+++-.+-+.. | -++++||+++|+|+|+-+.. .....+.+ -..|+.++. -
T Consensus 335 g~~v~~W~PQ~-~iL~H~~v~~FvTH~---G-~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~ 409 (451)
T PLN03004 335 GMVVKSWAPQV-PVLNHKAVGGFVTHC---G-WNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFV 409 (451)
T ss_pred cEEEEeeCCHH-HHhCCCccceEeccC---c-chHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCcc
Confidence 57777777443 378888885565522 3 45889999999999986543 34445543 245776652 3
Q ss_pred CHHHHHHHHHHHHHc
Q 001646 477 NIKALTHIILQVITN 491 (1038)
Q Consensus 477 D~eaLAeAI~~LLsD 491 (1038)
+.++++++|.+++.+
T Consensus 410 ~~e~l~~av~~vm~~ 424 (451)
T PLN03004 410 SSTEVEKRVQEIIGE 424 (451)
T ss_pred CHHHHHHHHHHHhcC
Confidence 789999999999988
No 155
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=90.14 E-value=4.3 Score=48.87 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=51.7
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc----ccccccccC-ccEEEEc-CCCHHH
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDR-VNGYLFP-KENIKA 480 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg----Gi~EiV~dG-~nGlLv~-~~D~ea 480 (1038)
+..+.++..+. .+|+..++-.+-+ +.|+ ++++||+++|+|+|+-+.. .....+.+. ..|+-+. .-+.++
T Consensus 325 ~g~v~~w~PQ~-~iL~h~~v~~fvt---H~G~-nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 399 (451)
T PLN02410 325 RGYIVKWAPQK-EVLSHPAVGGFWS---HCGW-NSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGA 399 (451)
T ss_pred CeEEEccCCHH-HHhCCCccCeeee---cCch-hHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHH
Confidence 56666766333 3666655533333 2144 5888999999999986554 333444432 3566653 346789
Q ss_pred HHHHHHHHHHc
Q 001646 481 LTHIILQVITN 491 (1038)
Q Consensus 481 LAeAI~~LLsD 491 (1038)
++++|.+++.+
T Consensus 400 v~~av~~lm~~ 410 (451)
T PLN02410 400 VERAVKRLMVE 410 (451)
T ss_pred HHHHHHHHHcC
Confidence 99999999987
No 156
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=89.97 E-value=3.3 Score=47.21 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=69.2
Q ss_pred HHHHHhhCCCC-CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHH
Q 001646 322 DTVRVKMGFKP-DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHN 400 (1038)
Q Consensus 322 ~~lReklgi~~-d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~q 400 (1038)
+.....+++.+ +..+++..|+.....|-| ..+...+.+..+.+. . .+++++||+.+. +..+++.+.
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~W-p~e~~~~li~~l~~~--~-------~~ivl~G~~~e~---~~~~~i~~~ 228 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRW-PHEHYAELAKRLIDQ--G-------YQVVLFGSAKDH---PAGNEIEAL 228 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCC-CHHHHHHHHHHHHHC--C-------CEEEEEEChhhH---HHHHHHHHh
Confidence 34455666654 455666777544344444 444445555555433 2 678899976642 334444443
Q ss_pred cCCCCceEEEccC--hhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 401 LHYPLGVVKHMAA--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 401 LgL~d~~V~flG~--~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
. ++..+.+.|. ..++..+++.||++|..- ...+-=|.|.|+|+|+--
T Consensus 229 ~--~~~~~~l~g~~sL~el~ali~~a~l~I~~D-------SGp~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 229 L--PGELRNLAGETSLDEAVDLIALAKAVVTND-------SGLMHVAAALNRPLVALY 277 (334)
T ss_pred C--CcccccCCCCCCHHHHHHHHHhCCEEEeeC-------CHHHHHHHHcCCCEEEEE
Confidence 2 2213446674 389999999999999875 235556789999999843
No 157
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.75 E-value=44 Score=38.50 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=63.6
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEcc
Q 001646 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (1038)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG 412 (1038)
...+++..|......|- ...+...+.+..+.+++ .+++++||+.+ .+..+++.+.+ .+ .+.+.|
T Consensus 175 ~~~i~i~pg~s~~~~K~-wp~e~~~~l~~~l~~~~---------~~Vvl~g~~~e---~e~~~~i~~~~--~~-~~~l~~ 238 (334)
T COG0859 175 RPYIVINPGASRGSAKR-WPLEHYAELAELLIAKG---------YQVVLFGGPDE---EERAEEIAKGL--PN-AVILAG 238 (334)
T ss_pred CCeEEEeccccccccCC-CCHHHHHHHHHHHHHCC---------CEEEEecChHH---HHHHHHHHHhc--CC-ccccCC
Confidence 34566666623323322 34445556666666554 58899997632 25556666633 33 233666
Q ss_pred Ch--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 413 AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 413 ~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
.. .++..+++.||++|-+. +..+-=|-|.|+|+|+--
T Consensus 239 k~sL~e~~~li~~a~l~I~~D-------Sg~~HlAaA~~~P~I~iy 277 (334)
T COG0859 239 KTSLEELAALIAGADLVIGND-------SGPMHLAAALGTPTIALY 277 (334)
T ss_pred CCCHHHHHHHHhcCCEEEccC-------ChHHHHHHHcCCCEEEEE
Confidence 44 89999999999998776 224556889999999854
No 158
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=89.73 E-value=6.6 Score=49.52 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=79.2
Q ss_pred CCCCCEEEEEEecccccccccccHHH-HHH---HHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHc---
Q 001646 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILR---ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNL--- 401 (1038)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKgldl-LLe---Al~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qL--- 401 (1038)
++++...++++- |+..- |...+ ++. -+.+|++ .|. ....++.+++.| ........+.+-+++.+.
T Consensus 440 ldp~slfdv~~r-R~heY---KRq~LniL~ii~~y~rik~-~p~--~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~ 512 (713)
T PF00343_consen 440 LDPDSLFDVQAR-RFHEY---KRQLLNILHIIDRYNRIKN-NPN--KKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEV 512 (713)
T ss_dssp --TTSEEEEEES--SCCC---CTHHHHHHHHHHHHHHHHH-STT--SCCS-EEEEEE----TT-HHHHHHHHHHHHHHHH
T ss_pred CCcchhhhhhhh-hcccc---cccCcccccHHHHHHHHHh-ccc--CCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 567777777776 66554 77776 333 3444443 222 234567888888 333333334444443322
Q ss_pred -----CCCC-ceEEEcc-Ch-hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccccc--CccEE
Q 001646 402 -----HYPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNGY 471 (1038)
Q Consensus 402 -----gL~d-~~V~flG-~~-edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~d--G~nGl 471 (1038)
.+.+ .+|.|+. +. +-...++.++||-+..|...-+..|..-+-||..|.+.++|--|...|+.+. .+|++
T Consensus 513 in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~f 592 (713)
T PF00343_consen 513 INNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIF 592 (713)
T ss_dssp HCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSE
T ss_pred HhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEE
Confidence 2222 1466665 43 5556789999999998865333689999999999999999999998888743 45788
Q ss_pred EEcC
Q 001646 472 LFPK 475 (1038)
Q Consensus 472 Lv~~ 475 (1038)
+|-.
T Consensus 593 iFG~ 596 (713)
T PF00343_consen 593 IFGL 596 (713)
T ss_dssp EES-
T ss_pred EcCC
Confidence 8753
No 159
>PLN03007 UDP-glucosyltransferase family protein
Probab=89.54 E-value=7.6 Score=47.13 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=52.2
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----ccccccc-CccEEEE--------
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLF-------- 473 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~d-G~nGlLv-------- 473 (1038)
++.+.++..+ ..+|+.+++-++-+ +.| -++++||+++|+|+|+-+..+ ...++.+ -..|+-+
T Consensus 346 g~~v~~w~PQ-~~iL~h~~v~~fvt---H~G-~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 420 (482)
T PLN03007 346 GLIIRGWAPQ-VLILDHQATGGFVT---HCG-WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKV 420 (482)
T ss_pred CEEEecCCCH-HHHhccCccceeee---cCc-chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccc
Confidence 5888888754 46788877744444 214 458899999999999976543 2222221 0123322
Q ss_pred --cCCCHHHHHHHHHHHHHc
Q 001646 474 --PKENIKALTHIILQVITN 491 (1038)
Q Consensus 474 --~~~D~eaLAeAI~~LLsD 491 (1038)
+.-+.++++++|.+++.+
T Consensus 421 ~~~~~~~~~l~~av~~~m~~ 440 (482)
T PLN03007 421 KGDFISREKVEKAVREVIVG 440 (482)
T ss_pred ccCcccHHHHHHHHHHHhcC
Confidence 123688999999999987
No 160
>PLN02208 glycosyltransferase family protein
Probab=88.19 E-value=13 Score=44.84 Aligned_cols=94 Identities=9% Similarity=0.062 Sum_probs=59.5
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----ccccccc-CccEEEEcC-----C
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLFPK-----E 476 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~d-G~nGlLv~~-----~ 476 (1038)
.+.+.++..+. ++|+...+-++-| +.| -++++||+++|+|+|+-+.-+ ...++.+ -..|+.+.. -
T Consensus 312 g~~v~~W~PQ~-~iL~H~~v~~Fvt---HcG-~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 386 (442)
T PLN02208 312 GVVWGGWVQQP-LILDHPSIGCFVN---HCG-PGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWF 386 (442)
T ss_pred CcEeeccCCHH-HHhcCCccCeEEc---cCC-chHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcC
Confidence 45666665333 3666676655555 213 468899999999999976543 3344333 234666643 2
Q ss_pred CHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHH
Q 001646 477 NIKALTHIILQVITNGKIS-PFARNIASIGRRS 508 (1038)
Q Consensus 477 D~eaLAeAI~~LLsDg~l~-elr~~mg~~are~ 508 (1038)
+.++++++|.+++++ + +..+++.+++++.
T Consensus 387 ~~~~l~~ai~~~m~~---~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 387 SKESLSNAIKSVMDK---DSDLGKLVRSNHTKL 416 (442)
T ss_pred cHHHHHHHHHHHhcC---CchhHHHHHHHHHHH
Confidence 678999999999987 4 3344455554443
No 161
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=87.86 E-value=41 Score=35.78 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=31.4
Q ss_pred ChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCC
Q 001646 413 AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (1038)
Q Consensus 413 ~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdv 457 (1038)
...++..+++.+|++|....+ ..+=|+++|+|+|+-+.
T Consensus 247 ~~~~~~~~~~~~~~~Is~RlH-------~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 247 SPDELLELISQADLVISMRLH-------GAILALSLGVPVIAISY 284 (286)
T ss_pred CHHHHHHHHhcCCEEEecCCH-------HHHHHHHcCCCEEEEec
Confidence 338889999999999988865 46779999999998653
No 162
>PRK14986 glycogen phosphorylase; Provisional
Probab=86.83 E-value=2.8 Score=53.46 Aligned_cols=148 Identities=9% Similarity=0.006 Sum_probs=93.2
Q ss_pred CCCCCEEEEEEecccccccccccHHH-HHHHHHHchh--hcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC---
Q 001646 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH--- 402 (1038)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKgldl-LLeAl~~L~~--k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLg--- 402 (1038)
++++...++++= |+..- |...+ ++..+..+.+ ..|+ ..-.+..+++.| ........+.+-+++.++.
T Consensus 539 ldp~sLfd~qak-R~heY---KRq~LNil~~i~ry~~i~~~p~--~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~i 612 (815)
T PRK14986 539 VNPKALFDVQIK-RIHEY---KRQLMNVLHVITRYNRIKADPD--AKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVI 612 (815)
T ss_pred cCcccceeeeeh-hhhhh---hhhhHHHhhhHHHHHHHHhCCC--cCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHh
Confidence 556666666665 66554 88877 6666554432 2222 112457888888 3332222333333332221
Q ss_pred -----CCC-ceEEEcc-Ch-hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccccc--CccEEE
Q 001646 403 -----YPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNGYL 472 (1038)
Q Consensus 403 -----L~d-~~V~flG-~~-edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~d--G~nGlL 472 (1038)
+.+ -+|.|+. +. +-...++.+|||-...|....+..|..=|-||.-|.+.++|--|...|+.++ ++||++
T Consensus 613 n~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~ 692 (815)
T PRK14986 613 NNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFI 692 (815)
T ss_pred ccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEE
Confidence 111 0355554 44 5556789999999998864322578888999999999999999999998876 789999
Q ss_pred EcCCCHHHHHHH
Q 001646 473 FPKENIKALTHI 484 (1038)
Q Consensus 473 v~~~D~eaLAeA 484 (1038)
+-. +.+++.+.
T Consensus 693 fG~-~~~ev~~~ 703 (815)
T PRK14986 693 FGN-TAEEVEAL 703 (815)
T ss_pred eCC-CHHHHHHH
Confidence 974 55555543
No 163
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.76 E-value=1.1 Score=42.37 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=54.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHcCCCCceEEE---ccCh-h--hHHHHHHhcCEEEEcccCC-cCCcCHHHHHHHHcCCC
Q 001646 379 VMILSGDSTSNYSVVIEAIAHNLHYPLGVVKH---MAAE-G--DVDSVLNTADVVIYGSFLE-EQTFPEILVKALCFRKP 451 (1038)
Q Consensus 379 LVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~f---lG~~-e--dV~~lLaaADIfVlPS~~E-eqGFPlvLLEAMA~GkP 451 (1038)
++|+||... +...+++.+++.|... +.+ -|.. . .++..+..||++|++..+- ....-.+--+|-..|+|
T Consensus 2 vliVGG~~~--~~~~~~~~~~~~G~~~--~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 2 VLIVGGRED--RERRYKRILEKYGGKL--IHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIP 77 (97)
T ss_pred EEEEcCCcc--cHHHHHHHHHHcCCEE--EEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCc
Confidence 678998332 2378888899888875 555 1222 2 3888999999999987432 11233445566778999
Q ss_pred EEEcCCcccccc
Q 001646 452 IIAPDLSNIRKY 463 (1038)
Q Consensus 452 VIaTdvgGi~Ei 463 (1038)
++.++..|...+
T Consensus 78 ~~~~~~~~~~~l 89 (97)
T PF10087_consen 78 IIYSRSRGVSSL 89 (97)
T ss_pred EEEECCCCHHHH
Confidence 999986665543
No 164
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=86.71 E-value=3.9 Score=52.00 Aligned_cols=140 Identities=10% Similarity=0.000 Sum_probs=87.7
Q ss_pred CCCCCEEEEEEecccccccccccHHH-HHHHHHHchh--hcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC--C
Q 001646 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH--Y 403 (1038)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKgldl-LLeAl~~L~~--k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLg--L 403 (1038)
++++...++++= |+..- |...+ ++..+..+.+ ..|+ ..-.+..+++.| ........+.+-+++..+. +
T Consensus 525 ldp~slfdvq~k-R~heY---KRq~Lnil~ii~~y~~i~~~p~--~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~i 598 (798)
T PRK14985 525 INPQAIFDVQIK-RLHEY---KRQHLNLLHILALYKEIRENPQ--ADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVI 598 (798)
T ss_pred cCchhcchhhHh-hhhhh---hhhhhHhhhhHHHHHHHHhCCC--cCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHh
Confidence 556666666665 66544 77777 6555544332 2222 112446788888 3333333344444443322 1
Q ss_pred --C---Cc--eEEEcc-Ch-hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccccc--CccEEE
Q 001646 404 --P---LG--VVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNGYL 472 (1038)
Q Consensus 404 --~---d~--~V~flG-~~-edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~d--G~nGlL 472 (1038)
. .+ +|.|+. +. +-...++.+|||-...|..-.+..|..=|-+|.-|.+.|+|--|...|+.++ ++||++
T Consensus 599 n~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~ 678 (798)
T PRK14985 599 NNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFI 678 (798)
T ss_pred cCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEE
Confidence 0 11 356655 43 5566789999999998854222577888999999999999999998888765 678998
Q ss_pred EcC
Q 001646 473 FPK 475 (1038)
Q Consensus 473 v~~ 475 (1038)
+-.
T Consensus 679 fG~ 681 (798)
T PRK14985 679 FGH 681 (798)
T ss_pred eCC
Confidence 853
No 165
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=86.52 E-value=4.7 Score=44.70 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=54.2
Q ss_pred HHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEccc
Q 001646 353 HALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSF 432 (1038)
Q Consensus 353 ldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~ 432 (1038)
...+++.+..+.+..|+ .+++|==-|........ ..+.+..+..+ +.++...-++.+++..||.++.-+
T Consensus 139 ~~~~~~~l~~~~~~~p~-------~~lvvK~HP~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~Ll~~s~~Vvtin- 207 (269)
T PF05159_consen 139 QADFLDMLESFAKENPD-------AKLVVKPHPDERGGNKY-SYLEELPNLPN--VVIIDDDVNLYELLEQSDAVVTIN- 207 (269)
T ss_pred HhHHHHHHHHHHHHCCC-------CEEEEEECchhhCCCCh-hHhhhhhcCCC--eEEECCCCCHHHHHHhCCEEEEEC-
Confidence 44456666666666666 67765443321000011 11222223343 555555568999999999998766
Q ss_pred CCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 433 LEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 433 ~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
+.+-+||+.+|+|||+..
T Consensus 208 ------StvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 208 ------STVGLEALLHGKPVIVFG 225 (269)
T ss_pred ------CHHHHHHHHcCCceEEec
Confidence 458889999999999964
No 166
>PLN02167 UDP-glycosyltransferase family protein
Probab=86.18 E-value=10 Score=45.93 Aligned_cols=78 Identities=8% Similarity=-0.008 Sum_probs=49.1
Q ss_pred eEEEccChhhHHHHHHhcC--EEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----cccc-cccCccEEEEcC----
Q 001646 407 VVKHMAAEGDVDSVLNTAD--VVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKY-VDDRVNGYLFPK---- 475 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaAD--IfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~Ei-V~dG~nGlLv~~---- 475 (1038)
++.+.++..+ ..+|+... +||.-. |+ ++++||+++|+|+|+-+..+ .... +..-..|+.+..
T Consensus 341 rg~v~~w~PQ-~~iL~h~~vg~fvtH~-----G~-nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 413 (475)
T PLN02167 341 RGLVCGWAPQ-VEILAHKAIGGFVSHC-----GW-NSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVS 413 (475)
T ss_pred CeeeeccCCH-HHHhcCcccCeEEeeC-----Cc-ccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccc
Confidence 4556677633 34666544 444333 34 47889999999999865443 2222 333334665532
Q ss_pred -----CCHHHHHHHHHHHHHc
Q 001646 476 -----ENIKALTHIILQVITN 491 (1038)
Q Consensus 476 -----~D~eaLAeAI~~LLsD 491 (1038)
-+.++++++|.+++.+
T Consensus 414 ~~~~~~~~~~l~~av~~~m~~ 434 (475)
T PLN02167 414 AYGEIVKADEIAGAVRSLMDG 434 (475)
T ss_pred ccCCcccHHHHHHHHHHHhcC
Confidence 2678999999999976
No 167
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=86.12 E-value=9.7 Score=45.97 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=52.6
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----cccccccC-ccEEEEc-----CC
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDR-VNGYLFP-----KE 476 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~dG-~nGlLv~-----~~ 476 (1038)
++.+.++..+. ++|+...+-++-+.. | -++++||+.+|+|+|+-+..+ ....+.+. ..|+-+. .-
T Consensus 328 ~g~v~~W~PQ~-~iL~h~~vg~fvtH~---G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 402 (455)
T PLN02152 328 VGMIVSWCSQI-EVLRHRAVGCFVTHC---G-WSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLV 402 (455)
T ss_pred CeEEEeeCCHH-HHhCCcccceEEeeC---C-cccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcC
Confidence 56667877433 477777775665521 3 468899999999999865442 33344331 1244442 12
Q ss_pred CHHHHHHHHHHHHHc
Q 001646 477 NIKALTHIILQVITN 491 (1038)
Q Consensus 477 D~eaLAeAI~~LLsD 491 (1038)
+.++++++|.+++++
T Consensus 403 ~~e~l~~av~~vm~~ 417 (455)
T PLN02152 403 ERGEIRRCLEAVMEE 417 (455)
T ss_pred cHHHHHHHHHHHHhh
Confidence 679999999999976
No 168
>PLN02173 UDP-glucosyl transferase family protein
Probab=86.03 E-value=6.9 Score=47.13 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=55.1
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----cccccccC-ccEEEEcC------
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDR-VNGYLFPK------ 475 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~dG-~nGlLv~~------ 475 (1038)
++.+.++..+. ++|+...+-++-|.. | -++++||+++|+|+|+-+..+ ...++.+. ..|+-+..
T Consensus 318 ~~~i~~W~PQ~-~iL~H~~v~~FvtHc---G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~ 392 (449)
T PLN02173 318 KSLVLKWSPQL-QVLSNKAIGCFMTHC---G-WNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGI 392 (449)
T ss_pred ceEEeCCCCHH-HHhCCCccceEEecC---c-cchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCc
Confidence 57888887543 477777766665522 2 578999999999999976543 33455442 34555532
Q ss_pred CCHHHHHHHHHHHHHc
Q 001646 476 ENIKALTHIILQVITN 491 (1038)
Q Consensus 476 ~D~eaLAeAI~~LLsD 491 (1038)
-+.+++++++.+++.+
T Consensus 393 ~~~e~v~~av~~vm~~ 408 (449)
T PLN02173 393 AKREEIEFSIKEVMEG 408 (449)
T ss_pred ccHHHHHHHHHHHhcC
Confidence 1679999999999977
No 169
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=85.76 E-value=16 Score=42.08 Aligned_cols=104 Identities=14% Similarity=0.193 Sum_probs=64.6
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEcc
Q 001646 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (1038)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG 412 (1038)
+..+++..|+.. ..|.| ..+...+.+..|.+. . .+++++||+.+... ...+++++...-.. .+.+.|
T Consensus 183 ~~~i~i~pga~~-~~K~W-p~e~fa~l~~~L~~~--~-------~~vvl~ggp~e~e~-~~~~~i~~~~~~~~-~~~l~g 249 (352)
T PRK10422 183 QNYVVIQPTARQ-IFKCW-DNDKFSAVIDALQAR--G-------YEVVLTSGPDKDDL-ACVNEIAQGCQTPP-VTALAG 249 (352)
T ss_pred CCeEEEecCCCc-cccCC-CHHHHHHHHHHHHHC--C-------CeEEEEcCCChHHH-HHHHHHHHhcCCCc-cccccC
Confidence 456777777554 44454 344445555555433 2 68888987653111 22345554333233 456677
Q ss_pred Ch--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 413 AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 413 ~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
.. .++..+++.||++|-.- ...+-=|-|+|+|+|+--
T Consensus 250 ~~sL~el~ali~~a~l~v~nD-------SGp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 250 KTTFPELGALIDHAQLFIGVD-------SAPAHIAAAVNTPLICLF 288 (352)
T ss_pred CCCHHHHHHHHHhCCEEEecC-------CHHHHHHHHcCCCEEEEE
Confidence 43 89999999999999765 235556778999999753
No 170
>PLN02764 glycosyltransferase family protein
Probab=85.38 E-value=32 Score=41.67 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=65.5
Q ss_pred EEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----ccccccc-CccEEEEcC-----CC
Q 001646 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLFPK-----EN 477 (1038)
Q Consensus 408 V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~d-G~nGlLv~~-----~D 477 (1038)
+.+.++..+ .++|+...+.++-+ + |=-.+++||+.+|+|+|+-+..+ ....+.+ -..|+-+.. -+
T Consensus 319 ~v~~~W~PQ-~~vL~h~~v~~Fvt---H-~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~ 393 (453)
T PLN02764 319 VVWGGWVQQ-PLILSHPSVGCFVS---H-CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFS 393 (453)
T ss_pred cEEeCCCCH-HHHhcCcccCeEEe---c-CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccC
Confidence 444465532 33566555544444 2 12468899999999999976543 3344533 234555422 27
Q ss_pred HHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHHhh
Q 001646 478 IKALTHIILQVITNGKIS-PFARNIASIGRRSVKN----LMALETIEGYAMLLENVL 529 (1038)
Q Consensus 478 ~eaLAeAI~~LLsDg~l~-elr~~mg~~are~ak~----Fs~e~ia~~Y~~Lye~vL 529 (1038)
.+++++++.+++.+ + +..+++.+++++..+. =+.....+.+.+.+++..
T Consensus 394 ~e~i~~av~~vm~~---~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 394 KESLRDAINSVMKR---DSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred HHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 89999999999987 4 3344454444443322 344445555555555443
No 171
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=84.36 E-value=3.9 Score=52.03 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=93.8
Q ss_pred CCCCCEEEEEEecccccccccccHHH-HHHHHHHchh--hcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC---
Q 001646 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH--- 402 (1038)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKgldl-LLeAl~~L~~--k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLg--- 402 (1038)
++++...++++= |+..- |...+ ++..+..+.+ ..|+ ..-.+..+++.| ........+.+-+++....
T Consensus 523 ldp~slfdvq~K-R~heY---KRq~LNil~ii~~y~~i~~~p~--~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~i 596 (794)
T TIGR02093 523 VDPNSIFDVQVK-RLHEY---KRQLLNVLHVIYLYNRIKEDPP--KDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVV 596 (794)
T ss_pred cCccccchhhhe-echhh---hHHHHHHhhhHHHHHHHHhCCC--cCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHh
Confidence 456666677776 66544 78877 5555544332 2232 112346788877 3333333344444444332
Q ss_pred -----CCC-ceEEEcc-Ch-hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccccc--CccEEE
Q 001646 403 -----YPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNGYL 472 (1038)
Q Consensus 403 -----L~d-~~V~flG-~~-edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~d--G~nGlL 472 (1038)
+.+ -+|.|+. +. +-...++.+|||-...|..-.+..|..=|-+|.-|.+.|+|--|...|+.++ ++|+++
T Consensus 597 N~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fi 676 (794)
T TIGR02093 597 NNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFI 676 (794)
T ss_pred ccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEE
Confidence 211 0355655 43 5567789999999998854222577888999999999999999999998876 789999
Q ss_pred EcCCCHHHHHHH
Q 001646 473 FPKENIKALTHI 484 (1038)
Q Consensus 473 v~~~D~eaLAeA 484 (1038)
|-. +.+++.+.
T Consensus 677 FG~-~~~ev~~~ 687 (794)
T TIGR02093 677 FGL-TVEEVEAL 687 (794)
T ss_pred cCC-CHHHHHHH
Confidence 964 55555543
No 172
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=83.59 E-value=5.3 Score=51.02 Aligned_cols=146 Identities=11% Similarity=0.022 Sum_probs=92.0
Q ss_pred CCCCCEEEEEEecccccccccccHHH-HHHHHH---HchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC--
Q 001646 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALL---PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH-- 402 (1038)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKgldl-LLeAl~---~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLg-- 402 (1038)
++++...++++= |+..- |...+ ++..+. ++++ .|+ ..-.+..+++.| ........+.+-+++..+.
T Consensus 526 ldp~slfdvq~K-R~heY---KRq~LNil~ii~~y~~i~~-~p~--~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 598 (797)
T cd04300 526 VDPDSLFDVQVK-RIHEY---KRQLLNVLHIIHLYNRIKE-NPN--ADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADV 598 (797)
T ss_pred cCCCccEEEEee-echhh---hhhhhHHHhhHHHHHHHHh-CCC--cCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 567777777776 65544 78877 555544 4433 222 112346777777 3332223334333333221
Q ss_pred ------CCC-ceEEEcc-Ch-hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccccc--CccEE
Q 001646 403 ------YPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNGY 471 (1038)
Q Consensus 403 ------L~d-~~V~flG-~~-edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~d--G~nGl 471 (1038)
+.+ -+|.|+. +. +-...++.+|||-...|..-.+..|..=|-+|.-|.+.|+|--|...|+.++ ++|++
T Consensus 599 in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~f 678 (797)
T cd04300 599 VNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIF 678 (797)
T ss_pred hccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEE
Confidence 111 0355555 43 5566789999999998854222577788999999999999999999998866 78999
Q ss_pred EEcCCCHHHHHH
Q 001646 472 LFPKENIKALTH 483 (1038)
Q Consensus 472 Lv~~~D~eaLAe 483 (1038)
+|-. +.+++.+
T Consensus 679 iFG~-~~~ev~~ 689 (797)
T cd04300 679 IFGL-TAEEVEA 689 (797)
T ss_pred EeCC-CHHHHHH
Confidence 9974 4555443
No 173
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=82.84 E-value=7 Score=42.29 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=58.4
Q ss_pred CCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEE
Q 001646 331 KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (1038)
Q Consensus 331 ~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~f 410 (1038)
.++..+++..|+.. ..|.| ..+...+.+..|.+.+ ..++++|++... ..+..+.+.+ ++++..+.+
T Consensus 103 ~~~~~i~i~~~a~~-~~k~w-p~e~~~~l~~~l~~~~---------~~vvl~g~~~~~-~~~~~~~~~~--~~~~~~~~~ 168 (247)
T PF01075_consen 103 KDKPYIGINPGASW-PSKRW-PAEKWAELIERLKERG---------YRVVLLGGPEEQ-EKEIADQIAA--GLQNPVINL 168 (247)
T ss_dssp TTSSEEEEE---SS-GGGS---HHHHHHHHHHHCCCT----------EEEE--SSHHH-HHHHHHHHHT--THTTTTEEE
T ss_pred ccCCeEEEeecCCC-ccccC-CHHHHHHHHHHHHhhC---------ceEEEEccchHH-HHHHHHHHHH--hcccceEee
Confidence 34566777777555 44333 3444555566665443 578888866531 1123333333 333214788
Q ss_pred ccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEc
Q 001646 411 MAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (1038)
Q Consensus 411 lG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaT 455 (1038)
.|.. .++..+++.||++|.+- ...+-=|.|.|+|+|+-
T Consensus 169 ~~~~~l~e~~ali~~a~~~I~~D-------tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 169 AGKTSLRELAALISRADLVIGND-------TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TTTS-HHHHHHHHHTSSEEEEES-------SHHHHHHHHTT--EEEE
T ss_pred cCCCCHHHHHHHHhcCCEEEecC-------ChHHHHHHHHhCCEEEE
Confidence 8854 88899999999999875 23566688999999985
No 174
>PLN02554 UDP-glycosyltransferase family protein
Probab=82.06 E-value=11 Score=45.84 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=55.6
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----cc-cccccCccEEEEc-------
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IR-KYVDDRVNGYLFP------- 474 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~-EiV~dG~nGlLv~------- 474 (1038)
++.+.++.. -..+|+...+-++-+ +.| -.+++||+.+|+|+|+-+..+ .. ..++.-..|..++
T Consensus 343 ~g~v~~W~P-Q~~iL~H~~v~~Fvt---H~G-~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~ 417 (481)
T PLN02554 343 IGKVIGWAP-QVAVLAKPAIGGFVT---HCG-WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDL 417 (481)
T ss_pred CceEEeeCC-HHHHhCCcccCcccc---cCc-cchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccc
Confidence 566667763 334564344433333 224 358899999999999976543 23 2233323465553
Q ss_pred ------CCCHHHHHHHHHHHHH-cCCCcHHHH---HHHHHHHHHH
Q 001646 475 ------KENIKALTHIILQVIT-NGKISPFAR---NIASIGRRSV 509 (1038)
Q Consensus 475 ------~~D~eaLAeAI~~LLs-Dg~l~elr~---~mg~~are~a 509 (1038)
.-+.++++++|.+++. + +..++ ++++.+++.+
T Consensus 418 ~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av 459 (481)
T PLN02554 418 LAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVAL 459 (481)
T ss_pred cccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHh
Confidence 1267899999999996 4 33333 3555554444
No 175
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=81.10 E-value=9.5 Score=46.73 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=75.0
Q ss_pred eEEEccCh--hhHHHHHHhcCEEEEcc-cCCcCCcCHHHHHHHHcCCCEEEcCCccc---------------cc------
Q 001646 407 VVKHMAAE--GDVDSVLNTADVVIYGS-FLEEQTFPEILVKALCFRKPIIAPDLSNI---------------RK------ 462 (1038)
Q Consensus 407 ~V~flG~~--edV~~lLaaADIfVlPS-~~EeqGFPlvLLEAMA~GkPVIaTdvgGi---------------~E------ 462 (1038)
.|+-+|.. .+...+|+.+.|||=-. -+| |.+.+||+|.|+|.|-+..... ++
T Consensus 323 ~V~NHG~l~~~ef~~lL~~akvfiGlGfP~E----gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhP 398 (559)
T PF15024_consen 323 FVKNHGILSGDEFQQLLRKAKVFIGLGFPYE----GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHP 398 (559)
T ss_pred hhhhcCcCCHHHHHHHHHhhhEeeecCCCCC----CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCCh
Confidence 45555533 79999999999999544 345 6689999999999887654211 11
Q ss_pred ----ccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHH
Q 001646 463 ----YVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN 527 (1038)
Q Consensus 463 ----iV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye~ 527 (1038)
++. .-..+.|+.+|.+++-+||.+++.+ +. .-++ -+|+.+.+.++...+++.
T Consensus 399 Y~e~~iG-~PhVytVd~~n~~~v~~Avk~il~~---~v---------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 399 YAEEFIG-EPHVYTVDINNSTEVEAAVKAILAT---PV---------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred HHHhhCC-CCeEEEEcCCCHHHHHHHHHHHHhc---CC---------CCcCCcccCHHHHHHHHHHHHHh
Confidence 121 2356889999999999999999998 31 1222 458888888888888865
No 176
>PLN02555 limonoid glucosyltransferase
Probab=80.69 E-value=28 Score=42.37 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=50.5
Q ss_pred eEEEccChhhHHHHHHh--cCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----cccccccC-ccEEEEc-----
Q 001646 407 VVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDR-VNGYLFP----- 474 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaa--ADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~dG-~nGlLv~----- 474 (1038)
++.+.++..+ ..+|+. +.+||.-. | -.+++||+.+|+|+|+-+.-+ ...++.+. ..|+-+.
T Consensus 338 ~g~v~~W~PQ-~~iL~H~~v~~FvtH~-----G-~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~ 410 (480)
T PLN02555 338 KGKIVQWCPQ-EKVLAHPSVACFVTHC-----G-WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAE 410 (480)
T ss_pred ceEEEecCCH-HHHhCCCccCeEEecC-----C-cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccc
Confidence 5777787644 446643 44454432 3 458899999999999976543 33444443 3466552
Q ss_pred C--CCHHHHHHHHHHHHHc
Q 001646 475 K--ENIKALTHIILQVITN 491 (1038)
Q Consensus 475 ~--~D~eaLAeAI~~LLsD 491 (1038)
. -+.++++++|.+++.+
T Consensus 411 ~~~v~~~~v~~~v~~vm~~ 429 (480)
T PLN02555 411 NKLITREEVAECLLEATVG 429 (480)
T ss_pred cCcCcHHHHHHHHHHHhcC
Confidence 1 2578999999999976
No 177
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=80.30 E-value=27 Score=41.83 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=63.2
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc----cccccc-ccCccEEEEcC-CCHHH
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYV-DDRVNGYLFPK-ENIKA 480 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg----Gi~EiV-~dG~nGlLv~~-~D~ea 480 (1038)
+|...++..+..-++...-+-++-+ +.|++.+ +||+.+|+|+|+.+.- -....+ ..|..+++... .....
T Consensus 336 nV~~~~W~PQ~~lll~H~~v~~FvT---HgG~nSt-~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~ 411 (496)
T KOG1192|consen 336 NVVLSKWAPQNDLLLDHPAVGGFVT---HGGWNST-LESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEE 411 (496)
T ss_pred ceEEecCCCcHHHhcCCCcCcEEEE---CCcccHH-HHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHH
Confidence 6888888866655533333444444 3367766 9999999999964432 233344 45554554443 12233
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHH
Q 001646 481 LTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAM 523 (1038)
Q Consensus 481 LAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~ 523 (1038)
+.+++..++++ ++..+...+-+.... +-.+. +.+..+.+
T Consensus 412 ~~~~~~~il~~---~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e 451 (496)
T KOG1192|consen 412 LLEAIKEILEN---EEYKEAAKRLSEILRDQPISP-ELAVKWVE 451 (496)
T ss_pred HHHHHHHHHcC---hHHHHHHHHHHHHHHcCCCCH-HHHHHHHH
Confidence 88999999988 665554444433333 22555 55554433
No 178
>PLN02207 UDP-glycosyltransferase
Probab=80.10 E-value=22 Score=43.18 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=48.6
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----ccccccc-CccEEEEc-------
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLFP------- 474 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~d-G~nGlLv~------- 474 (1038)
++.+.++..+ .++|+...+-.+-| +.|+ ++++||+.+|+|+|+-+..+ ...++.+ -..|+-+.
T Consensus 333 ~g~i~~W~PQ-~~IL~H~~vg~FvT---H~Gw-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~ 407 (468)
T PLN02207 333 RGMICGWSPQ-VEILAHKAVGGFVS---HCGW-NSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHS 407 (468)
T ss_pred CeEEEEeCCH-HHHhcccccceeee---cCcc-ccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEeccccccc
Confidence 5566676633 23566555544444 2144 47789999999999966543 3343332 23355321
Q ss_pred --CCCHHHHHHHHHHHHH
Q 001646 475 --KENIKALTHIILQVIT 490 (1038)
Q Consensus 475 --~~D~eaLAeAI~~LLs 490 (1038)
.-+.++++++|.+++.
T Consensus 408 ~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 408 DEIVNANEIETAIRCVMN 425 (468)
T ss_pred CCcccHHHHHHHHHHHHh
Confidence 1267899999999996
No 179
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=79.81 E-value=1.1e+02 Score=34.31 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=53.5
Q ss_pred HHHHHHHHHHchhhcccCCCCCCCEEEEEEe-C-CCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEc
Q 001646 353 HALILRALLPLFSEVSVENESNSPIKVMILS-G-DSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYG 430 (1038)
Q Consensus 353 ldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G-~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlP 430 (1038)
.+.+.+++..+.++.. .+++++. . +.. ....+++...+.-.. .|......+++..+++.||++|-.
T Consensus 190 ~~~l~~~l~~l~~~~g--------~~v~~i~~~~~~D---~~~~~~l~~~~~~~~-~i~~~~~~~e~~~~i~~~~~vI~~ 257 (298)
T TIGR03609 190 LLRLLRALDRLQRDTG--------AFVLFLPFQQPQD---LPLARALRDQLLGPA-EVLSPLDPEELLGLFASARLVIGM 257 (298)
T ss_pred HHHHHHHHHHHHHhhC--------CeEEEEeCCcchh---HHHHHHHHHhcCCCc-EEEecCCHHHHHHHHhhCCEEEEe
Confidence 4456777777765532 3555555 2 221 245556666554333 444333447888899999988776
Q ss_pred ccCCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 431 SFLEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 431 S~~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
..+ .++=|+++|+|+|+-.
T Consensus 258 RlH-------~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 258 RLH-------ALILAAAAGVPFVALS 276 (298)
T ss_pred chH-------HHHHHHHcCCCEEEee
Confidence 654 5778999999999753
No 180
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=79.66 E-value=73 Score=37.66 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=70.5
Q ss_pred hHHHHHhhCCC---CCCEEEEEEeccccccccccc-HHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHH
Q 001646 321 NDTVRVKMGFK---PDDLVIAIVGTQFMYRGLWLE-HALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEA 396 (1038)
Q Consensus 321 k~~lReklgi~---~d~~vIL~VGsrl~~~KGiKg-ldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~Lee 396 (1038)
+......+|++ ++...|..++ |. .. +..+++++..-. .++.++|.+|... ..++.
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~----Ye---~~~l~~ll~~~~~~~----------~pv~llvp~g~~~----~~~~~ 226 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFC----YE---NAALASLLDAWAASP----------KPVHLLVPEGRAL----NSLAA 226 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEe----CC---chHHHHHHHHHhcCC----------CCeEEEecCCccH----HHHHH
Confidence 45566778885 5566666666 43 33 556666666432 2388999888765 44433
Q ss_pred HHH--------HcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCC
Q 001646 397 IAH--------NLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (1038)
Q Consensus 397 La~--------qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdv 457 (1038)
... .....+-+|.++.++ ++...+|..||+-+.=. |. +.+-|.-+|+|.|=.-.
T Consensus 227 ~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRG--ED-----SfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 227 WLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRG--ED-----SFVRAQWAGKPFVWHIY 290 (374)
T ss_pred HhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEec--ch-----HHHHHHHhCCCceEecC
Confidence 332 011111246677765 78899999999988765 54 78999999999886543
No 181
>PLN00414 glycosyltransferase family protein
Probab=78.33 E-value=59 Score=39.24 Aligned_cols=94 Identities=7% Similarity=0.008 Sum_probs=57.1
Q ss_pred EEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----cccccc-cCccEEEEcC-----CC
Q 001646 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVD-DRVNGYLFPK-----EN 477 (1038)
Q Consensus 408 V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV~-dG~nGlLv~~-----~D 477 (1038)
..+.|+..+ .++|+...+-.+-+ +.| -++++||+++|+|+|+-+..+ ...++. .-..|+.+.. -+
T Consensus 314 ~vv~~w~PQ-~~vL~h~~v~~fvt---H~G-~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~ 388 (446)
T PLN00414 314 IVWEGWVEQ-PLILSHPSVGCFVN---HCG-FGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFS 388 (446)
T ss_pred eEEeccCCH-HHHhcCCccceEEe---cCc-hhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccC
Confidence 344455533 33565554433333 113 468899999999999976543 344453 3345666632 37
Q ss_pred HHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHH
Q 001646 478 IKALTHIILQVITNGKIS-PFARNIASIGRRSV 509 (1038)
Q Consensus 478 ~eaLAeAI~~LLsDg~l~-elr~~mg~~are~a 509 (1038)
.+++++++.+++.+ + +..+++.+++++..
T Consensus 389 ~~~i~~~v~~~m~~---~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 389 KESLRDTVKSVMDK---DSEIGNLVKRNHKKLK 418 (446)
T ss_pred HHHHHHHHHHHhcC---ChhhHHHHHHHHHHHH
Confidence 89999999999987 4 33445555555443
No 182
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=76.17 E-value=23 Score=40.20 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=60.5
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEE-eCCCCCchHHHHHHHHHHcCCCCceEEEc
Q 001646 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMIL-SGDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (1038)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIV-GG~~~e~Y~~~LeeLa~qLgL~d~~V~fl 411 (1038)
.+.+++..|+.. ..|-| ..+...+.+..+.++ . ..+++. |++.+ .+..+++++. .+ .+.+.
T Consensus 178 ~~~i~~~~~~s~-~~k~W-p~e~~a~li~~l~~~--~-------~~ivl~~G~~~e---~~~~~~i~~~--~~--~~~l~ 239 (322)
T PRK10964 178 GPYLVFLHATTR-DDKHW-PEAHWRELIGLLAPS--G-------LRIKLPWGAEHE---EQRAKRLAEG--FP--YVEVL 239 (322)
T ss_pred CCeEEEEeCCCc-ccccC-CHHHHHHHHHHHHHC--C-------CeEEEeCCCHHH---HHHHHHHHcc--CC--cceec
Confidence 444555556443 33333 444455666555443 2 567776 54433 1334444442 22 36677
Q ss_pred cCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc
Q 001646 412 AAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (1038)
Q Consensus 412 G~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg 458 (1038)
|.. .++..+++.||++|..- +..+-=|-|+|+|+|+--.+
T Consensus 240 g~~sL~elaali~~a~l~I~nD-------SGp~HlA~A~g~p~valfGp 281 (322)
T PRK10964 240 PKLSLEQVARVLAGAKAVVSVD-------TGLSHLTAALDRPNITLYGP 281 (322)
T ss_pred CCCCHHHHHHHHHhCCEEEecC-------CcHHHHHHHhCCCEEEEECC
Confidence 744 88999999999999875 23566688999999985433
No 183
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=75.63 E-value=37 Score=38.35 Aligned_cols=132 Identities=14% Similarity=0.102 Sum_probs=73.5
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEE
Q 001646 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (1038)
Q Consensus 332 ~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~f 410 (1038)
+++.+++..|+.. ..|-| ..+...+.+..+.++ . ..++++| ++.+ .+..+++.+. +++ ..+
T Consensus 178 ~~~~i~i~~gas~-~~K~w-p~e~~~~l~~~l~~~--~-------~~~vl~~g~~~e---~~~~~~i~~~--~~~--~~l 239 (319)
T TIGR02193 178 PAPYAVLLHATSR-DDKTW-PEERWRELARLLLAR--G-------LQIVLPWGNDAE---KQRAERIAEA--LPG--AVV 239 (319)
T ss_pred CCCEEEEEeCCCc-ccCCC-CHHHHHHHHHHHHHC--C-------CeEEEeCCCHHH---HHHHHHHHhh--CCC--Cee
Confidence 3456777777544 44444 444555666666543 2 5777775 4432 1334455543 333 345
Q ss_pred ccC--hhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccc-ccCcc-EEEE----cCCCHHHHH
Q 001646 411 MAA--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYV-DDRVN-GYLF----PKENIKALT 482 (1038)
Q Consensus 411 lG~--~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV-~dG~n-GlLv----~~~D~eaLA 482 (1038)
.|. ..++..+++.||++|..- ...+-=|-|+|+|+|+--.+..+... .-+.+ ..+. ..-++++..
T Consensus 240 ~g~~sL~el~ali~~a~l~I~~D-------Sgp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~ 312 (319)
T TIGR02193 240 LPKMSLAEVAALLAGADAVVGVD-------TGLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVL 312 (319)
T ss_pred cCCCCHHHHHHHHHcCCEEEeCC-------ChHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHH
Confidence 673 388999999999999875 22455577889999974333222211 11111 1222 223577777
Q ss_pred HHHHHH
Q 001646 483 HIILQV 488 (1038)
Q Consensus 483 eAI~~L 488 (1038)
+++.++
T Consensus 313 ~ai~~~ 318 (319)
T TIGR02193 313 AALEEL 318 (319)
T ss_pred HHHHhh
Confidence 777655
No 184
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=74.23 E-value=25 Score=40.22 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=64.7
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEcc
Q 001646 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (1038)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG 412 (1038)
+..+++..|+.. ..|.| ..+...+.+..+.++ . ..++++||+...+ .+..+++.+..+-+. .+.+.|
T Consensus 181 ~~~i~i~p~a~~-~~K~W-p~e~~~~l~~~l~~~--~-------~~ivl~g~p~~~e-~~~~~~i~~~~~~~~-~~~l~g 247 (344)
T TIGR02201 181 QNYIVIQPTSRW-FFKCW-DNDRFSALIDALHAR--G-------YEVVLTSGPDKDE-LAMVNEIAQGCQTPR-VTSLAG 247 (344)
T ss_pred CCEEEEeCCCCc-cccCC-CHHHHHHHHHHHHhC--C-------CeEEEecCCCHHH-HHHHHHHHhhCCCCc-ccccCC
Confidence 455667777554 33444 344555666555543 2 6788999764210 123445554433333 355677
Q ss_pred Ch--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 413 AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 413 ~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
.. .++..+++.||++|-.- ...+-=|.|.|+|+|+--
T Consensus 248 ~~sL~el~ali~~a~l~Vs~D-------SGp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGVD-------SVPMHMAAALGTPLVALF 286 (344)
T ss_pred CCCHHHHHHHHHhCCEEEecC-------CHHHHHHHHcCCCEEEEE
Confidence 44 89999999999999874 235666889999999843
No 185
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=74.19 E-value=63 Score=39.48 Aligned_cols=80 Identities=10% Similarity=-0.037 Sum_probs=53.2
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----ccccc-ccCccEEEEcC----CC
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYV-DDRVNGYLFPK----EN 477 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV-~dG~nGlLv~~----~D 477 (1038)
.+.+.++..+ .++|+...+-.+-+ +.| -++++||+.+|+|+|+-+..+ ....+ +.-..|.-++. -+
T Consensus 339 g~vv~~W~PQ-~~iL~h~~vg~Fit---H~G-~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 339 GFVVPSWAPQ-AEILAHQAVGGFLT---HCG-WSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413 (481)
T ss_pred CEEEeecCCH-HHHhCCcccCeeEe---cCc-hhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCccc
Confidence 4777777643 34666666644444 213 468899999999999976553 33344 23334666643 36
Q ss_pred HHHHHHHHHHHHHc
Q 001646 478 IKALTHIILQVITN 491 (1038)
Q Consensus 478 ~eaLAeAI~~LLsD 491 (1038)
.++++++|.+++.+
T Consensus 414 ~~~l~~av~~vm~~ 427 (481)
T PLN02992 414 RSKIEALVRKVMVE 427 (481)
T ss_pred HHHHHHHHHHHhcC
Confidence 78999999999976
No 186
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=71.65 E-value=2.1e+02 Score=33.65 Aligned_cols=330 Identities=13% Similarity=0.148 Sum_probs=170.8
Q ss_pred CCCChHHHHHHHHHHHHHHcC--CeEEEEEcCCCc---chhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCchhH
Q 001646 154 LLIDPQQLQMVTIAIALREIG--YAIQVYSLEDGR---AHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKV 228 (1038)
Q Consensus 154 L~iGGae~~v~~LAkaL~k~G--~eV~V~t~~~g~---~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~~~ 228 (1038)
+...|.-.-+.-|+..|++.. ++|.++..+++. ....+...++++..+ ...+ .+.|+++=-+.....
T Consensus 15 iW~NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~lDVlIEmg~ql~~ 86 (364)
T PF10933_consen 15 IWENGINQNCIFLAMLLQQSPRVESVVLVNGGDGNPIPAALMLDLLDVPLVDF------DDAI--DELDVLIEMGAQLDP 86 (364)
T ss_pred hhhhchhhHHHHHHHHHhhCCCcceEEEEECCCCCcCCcccccccCCCceecH------HHhc--ccCCEEEEccCccCH
Confidence 456788888999999999876 688888776542 122234444443322 2222 278988865544322
Q ss_pred HHHHHHhCCCCCCCEEEEEeCchhHHhHHHhhhhch-hHHHHHHHHHHHhcceE-eccCCc-c-ccccccCCCCCEEEcC
Q 001646 229 VISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQ-LELLNDWKKVFNRATVV-VFPDYV-L-PMMYSAFDAGNYYVIP 304 (1038)
Q Consensus 229 ~la~La~~~~~gIPvI~tiHg~~L~~~lek~~~~~~-d~lIs~~~~~~~~a~~v-vfps~~-l-~viyn~vd~~ki~VIP 304 (1038)
--...+ +..|.++|....|.....-++..+-... ..++.. ...|.+ .+|... . .-....+....+.++|
T Consensus 87 ~~~~~~--~~~G~KvV~y~~GndYv~~~E~~lF~k~~~~~f~~-----~~yD~VW~lPq~~~~~~~yl~~l~r~Pv~~vP 159 (364)
T PF10933_consen 87 EWLDYM--RARGGKVVSYRCGNDYVMDIESMLFNKPSGHLFNG-----APYDEVWTLPQFENTCAPYLETLHRCPVRVVP 159 (364)
T ss_pred HHHHHH--HHcCCeEEEEeCCchHHHHhhHHhcCCCCCccCCC-----CCCceeEeccchhhhchHHHHHHhcCCceeeC
Confidence 333333 3567899988888554433333221111 010000 011111 122211 0 0000111112344444
Q ss_pred CCCCCccccccccchhhHHHH---HhhCCCCC--CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEE
Q 001646 305 GSPAKAWEADTNMDLYNDTVR---VKMGFKPD--DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKV 379 (1038)
Q Consensus 305 gsgVD~~~f~~~~~~~k~~lR---eklgi~~d--~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkL 379 (1038)
-. |.. .+....-..+. .++|..++ ...|.++=..+.--|----.-+++|++-+-. |+ .+..
T Consensus 160 ~i----WsP-~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~aYR~~---P~------~v~~ 225 (364)
T PF10933_consen 160 HI----WSP-RFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEEAYRAD---PD------AVEH 225 (364)
T ss_pred cc----CCc-hhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEEeecCccHHHHHHHHHhC---hh------hcce
Confidence 21 100 01000011111 13344432 1122111101111100011234555554433 33 2555
Q ss_pred EEEeCCCCCchHHHHHHHHHHcCC-CCceEEEccChhhHHHHHHh-cCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCC
Q 001646 380 MILSGDSTSNYSVVIEAIAHNLHY-PLGVVKHMAAEGDVDSVLNT-ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (1038)
Q Consensus 380 VIVGG~~~e~Y~~~LeeLa~qLgL-~d~~V~flG~~edV~~lLaa-ADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdv 457 (1038)
+.+.....-+-...+..++..+.+ .++...|.|.. +++.+++. .|++| .-.||. +......||+--|=|.|-.
T Consensus 226 ~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~-~~p~fla~~tD~Vv-SHqWeN-~lNYlY~daLyggYPLVHN-- 300 (364)
T PF10933_consen 226 VYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF-DFPDFLAQHTDAVV-SHQWEN-PLNYLYYDALYGGYPLVHN-- 300 (364)
T ss_pred EEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec-ChHHHHHhCCCEEE-eccccc-hhhHHHHHHHhcCCCcccC--
Confidence 555522211222567777777776 44578888865 77777775 56665 455776 7888999999999998863
Q ss_pred cccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHH--HHHHHHHH
Q 001646 458 SNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALE--TIEGYAML 524 (1038)
Q Consensus 458 gGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~--ia~~Y~~L 524 (1038)
..++.+ .|+..+..|..+=++++.+.+.+- +.......+++++....++..+ .+..|.+.
T Consensus 301 ---S~~l~d--~GYYY~~fD~~~G~r~L~~A~~~H--D~~~~~Y~~ra~~~l~~~~p~n~~nv~~y~~~ 362 (364)
T PF10933_consen 301 ---SPLLKD--VGYYYPDFDAFEGARQLLRAIREH--DADLDAYRARARRLLDRLSPENPANVRAYEAR 362 (364)
T ss_pred ---cchhcc--cCcCCCCccHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHhhCCCCHHHHHHHHHh
Confidence 245555 799999999999999999888640 4556678888888886654443 55556544
No 187
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=70.77 E-value=4.5 Score=45.02 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=50.4
Q ss_pred hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCC-CEEEcCCccc--ccccccCccEEEEcCCCHHHHHHHHH
Q 001646 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK-PIIAPDLSNI--RKYVDDRVNGYLFPKENIKALTHIIL 486 (1038)
Q Consensus 415 edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~Gk-PVIaTdvgGi--~EiV~dG~nGlLv~~~D~eaLAeAI~ 486 (1038)
.+..+.|+.|..++.|.-.. .+..-+.|||++|+ |||.++.--. .++++=....+.++..+..+|.+.|.
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~--~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDG--PWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred hHHHHhcccCeEEEECCCCC--cccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHh
Confidence 45778899999999987543 37889999999996 9998764433 35665556677787666666655554
No 188
>PLN00164 glucosyltransferase; Provisional
Probab=70.68 E-value=9.9 Score=46.18 Aligned_cols=79 Identities=10% Similarity=0.010 Sum_probs=50.8
Q ss_pred EEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc----cccccc-ccCccEEEEcC-------
Q 001646 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYV-DDRVNGYLFPK------- 475 (1038)
Q Consensus 408 V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg----Gi~EiV-~dG~nGlLv~~------- 475 (1038)
+.+.++. .-..+|+..++-.+-+ +.|+ ++++||+++|+|+|+-+.- .....+ ..-..|+.+..
T Consensus 341 ~~v~~w~-PQ~~iL~h~~vg~fvt---H~Gw-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~ 415 (480)
T PLN00164 341 LVWPTWA-PQKEILAHAAVGGFVT---HCGW-NSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNF 415 (480)
T ss_pred eEEeecC-CHHHHhcCcccCeEEe---eccc-chHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCc
Confidence 5555665 3344677777644444 2244 4888999999999986543 333334 33234666532
Q ss_pred CCHHHHHHHHHHHHHc
Q 001646 476 ENIKALTHIILQVITN 491 (1038)
Q Consensus 476 ~D~eaLAeAI~~LLsD 491 (1038)
-+.++++++|.+++.+
T Consensus 416 ~~~e~l~~av~~vm~~ 431 (480)
T PLN00164 416 VEAAELERAVRSLMGG 431 (480)
T ss_pred CcHHHHHHHHHHHhcC
Confidence 2579999999999977
No 189
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=69.68 E-value=20 Score=43.53 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=24.3
Q ss_pred cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeC
Q 001646 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (1038)
Q Consensus 214 ~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg 249 (1038)
..||+||.|...+ ..++.++.. ..++|..++.|.
T Consensus 400 ~~PdlI~GnYsDg-nlvA~LLs~-~lgv~~~~iaHs 433 (550)
T PF00862_consen 400 GKPDLIIGNYSDG-NLVASLLSR-KLGVTQCFIAHS 433 (550)
T ss_dssp S--SEEEEEHHHH-HHHHHHHHH-HHT-EEEEE-SS
T ss_pred CCCcEEEeccCcc-hHHHHHHHh-hcCCceehhhhc
Confidence 5899999999888 477777754 678999999996
No 190
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=64.05 E-value=86 Score=34.30 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=60.9
Q ss_pred CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccC
Q 001646 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAA 413 (1038)
Q Consensus 334 ~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~ 413 (1038)
-.+|+|+|+...+. +. .|++.+++|++..-. +.++..|....+ .+.+.+++..++-+.
T Consensus 108 ~riVvFvGSpi~e~---ek--eLv~~akrlkk~~Va-------idii~FGE~~~~--~e~l~~fida~N~~~-------- 165 (259)
T KOG2884|consen 108 QRIVVFVGSPIEES---EK--ELVKLAKRLKKNKVA-------IDIINFGEAENN--TEKLFEFIDALNGKG-------- 165 (259)
T ss_pred eEEEEEecCcchhh---HH--HHHHHHHHHHhcCee-------EEEEEecccccc--HHHHHHHHHHhcCCC--------
Confidence 34666777655543 11 345555666554433 555555511111 144444444333211
Q ss_pred hhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccccccc-ccC-ccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 414 EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYV-DDR-VNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 414 ~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV-~dG-~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
..|+++..|+ + | +++-.-.-.|||.-+-|+..--+ ..| ..-+=+++++--+||.||+--++.
T Consensus 166 --------~gshlv~Vpp---g---~--~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 166 --------DGSHLVSVPP---G---P--LLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSMEE 229 (259)
T ss_pred --------CCceEEEeCC---C---c--cHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHHH
Confidence 1356666665 1 2 44444456799988755443222 211 122334556667899998876655
No 191
>PLN02534 UDP-glycosyltransferase
Probab=63.21 E-value=1.6e+02 Score=36.10 Aligned_cols=79 Identities=9% Similarity=0.007 Sum_probs=50.4
Q ss_pred eEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCccc----ccccccC-ccEEEEc-------
Q 001646 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDR-VNGYLFP------- 474 (1038)
Q Consensus 407 ~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi----~EiV~dG-~nGlLv~------- 474 (1038)
.+.+.|+..+ ..++...++-.+-+ + |=..+++||+++|+|+|+-+..+- ...+.+. ..|+-+.
T Consensus 345 g~~v~~w~pq-~~iL~h~~v~~fvt---H-~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~ 419 (491)
T PLN02534 345 GLLIKGWAPQ-VLILSHPAIGGFLT---H-CGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRW 419 (491)
T ss_pred CeeccCCCCH-HHHhcCCccceEEe---c-CccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccc
Confidence 5777787755 55788888755555 2 224688999999999999765432 2222211 1222221
Q ss_pred --------CCCHHHHHHHHHHHHH
Q 001646 475 --------KENIKALTHIILQVIT 490 (1038)
Q Consensus 475 --------~~D~eaLAeAI~~LLs 490 (1038)
.-+.+++++++.+++.
T Consensus 420 ~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 420 GDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cccccccCccCHHHHHHHHHHHhc
Confidence 1257899999999996
No 192
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=61.96 E-value=14 Score=38.60 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHHH--HHcCCeEEEEEcCCCc
Q 001646 156 IDPQQLQMVTIAIAL--REIGYAIQVYSLEDGR 186 (1038)
Q Consensus 156 iGGae~~v~~LAkaL--~k~G~eV~V~t~~~g~ 186 (1038)
.||....+..+++.+ ....++..+++..+..
T Consensus 7 sGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~ 39 (170)
T PF08660_consen 7 SGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQ 39 (170)
T ss_pred CcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcc
Confidence 699999999999999 3345677777766643
No 193
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=59.65 E-value=41 Score=38.65 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=51.8
Q ss_pred HchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccCh-----hhHHHHHH-----hcC--EEEE
Q 001646 362 PLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE-----GDVDSVLN-----TAD--VVIY 429 (1038)
Q Consensus 362 ~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~-----edV~~lLa-----aAD--IfVl 429 (1038)
++.+..|+ .++|+||+.... ..++...+.+|++- ++.-|.. +.+...+. +.+ -+|.
T Consensus 70 eI~~lnpd--------~VLIIGGp~AVs--~~yE~~Lks~GitV--~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvv 137 (337)
T COG2247 70 EIIELNPD--------LVLIIGGPIAVS--PNYENALKSLGITV--KRIGGANRYETAEKVAKFFREDYPNAFKNVKVVV 137 (337)
T ss_pred HHHhhCCc--------eEEEECCCCcCC--hhHHHHHHhCCcEE--EEecCcchHHHHHHHHHHHHhhchhhhcCeEEEE
Confidence 45556677 888999877321 34444455677763 5555633 34444553 444 4555
Q ss_pred cccCCcCCcCHHHHHHHHcCC-CEEEcCCc
Q 001646 430 GSFLEEQTFPEILVKALCFRK-PIIAPDLS 458 (1038)
Q Consensus 430 PS~~EeqGFPlvLLEAMA~Gk-PVIaTdvg 458 (1038)
.+-|+ ++-.++|+|--|+ ||+.++..
T Consensus 138 v~GwD---y~~~~~e~~k~~~~p~~~~n~~ 164 (337)
T COG2247 138 VYGWD---YADALMELMKEGIVPVILKNTS 164 (337)
T ss_pred Eeccc---cHHHHHHHHhcCcceeEecccc
Confidence 56566 4559999999995 88888754
No 194
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=54.68 E-value=41 Score=33.92 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHhcCEEEEcc--cCCcC-CcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 001646 418 DSVLNTADVVIYGS--FLEEQ-TFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (1038)
Q Consensus 418 ~~lLaaADIfVlPS--~~Eeq-GFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LL 489 (1038)
..++..||++|.-- .+- | .-.+=.--|.|.|+|.|.-.-..+..-+.+-.+.-++-..+++...+.+..++
T Consensus 67 ~~li~~aDvVVvrFGekYK-QWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEKYK-QWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHhhCCEEEEEechHHH-HHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 45899999998643 111 0 01122345789999999866554443333211222333456777777776654
No 195
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=50.97 E-value=1.3e+02 Score=32.45 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=54.8
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEE-
Q 001646 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIA- 454 (1038)
Q Consensus 378 kLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIa- 454 (1038)
+++++|.... ....+++.++..|-.--.-+++|-. +-..+-+..-|+++...-.++ ..++.||..+|+|||+
T Consensus 63 ~ILfVgtk~~--~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~---~~Av~EA~~l~IP~Iai 137 (196)
T TIGR01012 63 DILVVSARIY--GQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRAD---HQALKEASEVGIPIVAL 137 (196)
T ss_pred eEEEEecCHH--HHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCccc---cHHHHHHHHcCCCEEEE
Confidence 6667772221 2245556666554332112344421 111122455667666554442 6899999999999998
Q ss_pred cCCcccccccccCccEEEEcCCC-HHHHHHHHHHHHHc
Q 001646 455 PDLSNIRKYVDDRVNGYLFPKEN-IKALTHIILQVITN 491 (1038)
Q Consensus 455 TdvgGi~EiV~dG~nGlLv~~~D-~eaLAeAI~~LLsD 491 (1038)
.|.-..+..|+ +.+|.+| .-.-...+..++.+
T Consensus 138 ~DTn~dp~~vd-----ypIP~Ndds~~Si~li~~lla~ 170 (196)
T TIGR01012 138 CDTDNPLRYVD-----LVIPTNNKGRHSLALIYWLLAR 170 (196)
T ss_pred eeCCCCCccCC-----EEECCCCchHHHHHHHHHHHHH
Confidence 45555555552 4455433 33333444455544
No 196
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=49.97 E-value=1.4e+02 Score=36.29 Aligned_cols=111 Identities=11% Similarity=0.104 Sum_probs=66.0
Q ss_pred CCEEEEEEeCCCCCchHHHHHHHHHH-cCCCCceEEEccC------hhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHH
Q 001646 375 SPIKVMILSGDSTSNYSVVIEAIAHN-LHYPLGVVKHMAA------EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (1038)
Q Consensus 375 ~~vkLVIVGG~~~e~Y~~~LeeLa~q-LgL~d~~V~flG~------~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA 447 (1038)
..+-+.++|+.........+-++.++ .+... .+..... .....+.++.|..++.|.-.+. ..-.+.||+.
T Consensus 289 R~~L~~F~G~~~~~~iR~~L~~~~~~~~~~~~-~~~~~~g~~~~~~~~~y~~~m~~S~FCL~p~Gd~~--ts~R~fdai~ 365 (464)
T KOG1021|consen 289 RPILAFFAGAPAGGQIRSILLDLWKKDPDTEV-FVNCPRGKVSCDRPLNYMEGMQDSKFCLCPPGDTP--TSPRLFDAIV 365 (464)
T ss_pred CceEEEEeccccCCcHHHHHHHHhhcCcCccc-cccCCCCccccCCcchHHHHhhcCeEEECCCCCCc--ccHhHHHHHH
Confidence 44677788864444445555555553 11111 1222211 1467788999999999997773 6679999999
Q ss_pred cCC-CEEEcCCcccc--cccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 448 FRK-PIIAPDLSNIR--KYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 448 ~Gk-PVIaTdvgGi~--EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
.|| |||.++.--.+ +.++-..-++.++. +++-+.|.++|..
T Consensus 366 ~gCvPViisd~~~lpf~~~~d~~~fSV~v~~---~~v~~~~~~iL~~ 409 (464)
T KOG1021|consen 366 SGCVPVIISDGIQLPFGDVLDWTEFSVFVPE---KDVPELIKNILLS 409 (464)
T ss_pred hCCccEEEcCCcccCcCCCccceEEEEEEEH---HHhhhHHHHHHHh
Confidence 997 99999863332 33333344556653 3333335555544
No 197
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=49.17 E-value=26 Score=34.16 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=35.0
Q ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccc
Q 001646 154 LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG 204 (1038)
Q Consensus 154 L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~ 204 (1038)
...+|--.-+..+++.|+++||+|.+.+... .....+..|+++..+...
T Consensus 6 ~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~--~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRRGHEVRLATPPD--FRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHTT-EEEEEETGG--GHHHHHHTT-EEEESSSC
T ss_pred cCChhHHHHHHHHHHHHhccCCeEEEeeccc--ceecccccCceEEEecCC
Confidence 3466777778999999999999999887643 444457777777666554
No 198
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=46.56 E-value=1.8e+02 Score=29.41 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=48.6
Q ss_pred hcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEc-CCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 423 TADVVIYGSFLEEQTFPEILVKALCFRKPIIAP-DLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 423 aADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaT-dvgGi---~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
..|++++-..... .-|..+++.+....|||.. ..... ...+..|..|++..|.+.+.+.++|..++..
T Consensus 47 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 47 GVQVCICDISMPD-ISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 3588887654432 3467788888778888764 32221 2334568889999999999999999998876
No 199
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=46.36 E-value=1.7e+02 Score=31.74 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=54.3
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEE-
Q 001646 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIA- 454 (1038)
Q Consensus 378 kLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIa- 454 (1038)
+++++|... .....+++.++..|..-..=+++|-. +-...-+..=|+++...-..+ ..++.||-.+|+|||+
T Consensus 69 ~ILfVgTk~--~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~---~~AI~EA~kl~IP~Iai 143 (204)
T PRK04020 69 KILVVSSRQ--YGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGD---AQAVKEAIEVGIPVVAL 143 (204)
T ss_pred eEEEEeCCH--HHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCccc---HHHHHHHHHhCCCEEEE
Confidence 566666222 12355666666554432111344411 211222335566666554442 6899999999999998
Q ss_pred cCCcccccccccCccEEEEcCCC-HHHHHHHHHHHHHc
Q 001646 455 PDLSNIRKYVDDRVNGYLFPKEN-IKALTHIILQVITN 491 (1038)
Q Consensus 455 TdvgGi~EiV~dG~nGlLv~~~D-~eaLAeAI~~LLsD 491 (1038)
.|.-..+.+| -+.+|.+| .-.-...+..++.+
T Consensus 144 vDTn~dp~~V-----dypIP~Ndds~~SI~li~~ll~~ 176 (204)
T PRK04020 144 CDTDNLTSNV-----DLVIPTNNKGRKALALVYWLLAR 176 (204)
T ss_pred EeCCCCcccC-----ceeECCCCchHHHHHHHHHHHHH
Confidence 4555555554 24555543 22333344444544
No 200
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=45.58 E-value=2.1e+02 Score=30.07 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=65.3
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHH--hcCEEEEcccCCcC--CcCHHHHHHHHc---C
Q 001646 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQ--TFPEILVKALCF---R 449 (1038)
Q Consensus 377 vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLa--aADIfVlPS~~Eeq--GFPlvLLEAMA~---G 449 (1038)
++++|+..... ....++.+.+..+.-. .|.......+....+. ..|++++-...... .-|..+++.+.. +
T Consensus 4 ~~Ilivdd~~~--~~~~l~~~L~~~~~~~-~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 4 MNVIIADDHPI--VLFGIRKSLEQIEWVN-VVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred eEEEEECCcHH--HHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 57777763321 2244555554322111 1333333345555444 36888886544310 146677777653 4
Q ss_pred CCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 450 KPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 450 kPVIa-TdvgG---i~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
+|||. +.... ..+.+..|..|++..+.++++|.++|..+...
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 57665 33332 22446778999999999999999999998876
No 201
>PRK04155 chaperone protein HchA; Provisional
Probab=44.09 E-value=1.4e+02 Score=33.97 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=49.2
Q ss_pred cceeeecccchhhhhhhcccccccccccccccccCCCCCceEEEEcCCCC-----------CChHHHHHHHHHHHHHHcC
Q 001646 106 GEEVTFLPLKLMEKFQSEDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLL-----------IDPQQLQMVTIAIALREIG 174 (1038)
Q Consensus 106 g~~l~f~p~~~~~rf~~~~~~~~~~~~~~~~~~r~~~R~prIaiV~~~L~-----------iGGae~~v~~LAkaL~k~G 174 (1038)
.+.=.|-||..+.+-.-.. +-+++.+ ..-.++.-.+ +|++|..+-. .|=-+.-+......|.+.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~k-kiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG 90 (287)
T PRK04155 15 AEDNAFFPSPYSLSQYTSP-KSDLDGV--DYPKPYRGGK-KILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAG 90 (287)
T ss_pred cccCCcCCChhhhhhhcCC-CcCCCCC--cCCCcCCCCC-eEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCC
Confidence 4445677887776554333 4455544 3344564444 8888887421 2223456777889999999
Q ss_pred CeEEEEEcCCCc
Q 001646 175 YAIQVYSLEDGR 186 (1038)
Q Consensus 175 ~eV~V~t~~~g~ 186 (1038)
++|.+++...++
T Consensus 91 ~eVdiAS~~G~~ 102 (287)
T PRK04155 91 FEFDVATLSGNP 102 (287)
T ss_pred CEEEEEecCCCc
Confidence 999999986533
No 202
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=43.98 E-value=1.3e+02 Score=33.52 Aligned_cols=101 Identities=11% Similarity=0.091 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHchhhcccCCCCCCCEEEEEEe--CCCCCchHHHHHHHHHHcCCCCceEEEccC-----hhhHHHHHHhc
Q 001646 352 EHALILRALLPLFSEVSVENESNSPIKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA-----EGDVDSVLNTA 424 (1038)
Q Consensus 352 gldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG--G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~-----~edV~~lLaaA 424 (1038)
+-..+++.+-.+... ++ .+++++. +.....|.+.+.+..+++|.....+..+.. .+++.+.+..|
T Consensus 12 ~~~~i~~~~~~lag~-~~-------~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~a 83 (250)
T TIGR02069 12 GDREILREFVSRAGG-ED-------AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNA 83 (250)
T ss_pred ChHHHHHHHHHHhCC-CC-------ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhC
Confidence 344467777555432 12 4666776 333345666777777888987512222221 13567889999
Q ss_pred CEEEEcc--------cCCcCCcCHHHHHHHHcCCCEEEcCCccc
Q 001646 425 DVVIYGS--------FLEEQTFPEILVKALCFRKPIIAPDLSNI 460 (1038)
Q Consensus 425 DIfVlPS--------~~EeqGFPlvLLEAMA~GkPVIaTdvgGi 460 (1038)
|++++.. .+.+.+.--.+-++...|+|++.+..|.+
T Consensus 84 d~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 84 TGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred CEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 9988864 22321334467789999999999887764
No 203
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.97 E-value=56 Score=38.68 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=55.9
Q ss_pred cCCCCCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc------chhhhhhcCceEEEcccchhH-----
Q 001646 139 RFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR------AHEVWRNIGVPVAILQTGREK----- 207 (1038)
Q Consensus 139 r~~~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~------~~~~~e~~gI~v~~l~~~rkl----- 207 (1038)
.++.++|.+.++.+ +.-+|-...+..+|.++++.||.+.++|...-. +.......++|++.-......
T Consensus 95 ~~~K~kpsVimfVG-LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~ 173 (483)
T KOG0780|consen 95 QPKKGKPSVIMFVG-LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIAS 173 (483)
T ss_pred ccccCCCcEEEEEe-ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHH
Confidence 33666777776665 455667788999999999999999999975422 222234566776543222211
Q ss_pred --HHHhhhcCCcEEEEcCC
Q 001646 208 --ASFVNWLNYDGILVNSL 224 (1038)
Q Consensus 208 --~~lI~~~kpDIVhvhs~ 224 (1038)
..-.+..++|+|++.+.
T Consensus 174 egv~~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 174 EGVDRFKKENFDVIIVDTS 192 (483)
T ss_pred HHHHHHHhcCCcEEEEeCC
Confidence 22245579999999764
No 204
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=42.64 E-value=46 Score=34.60 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=29.8
Q ss_pred CCCCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 001646 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (1038)
Q Consensus 141 ~~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~ 184 (1038)
....++++++++....||- .+.+|+.|...|++|+|+...+
T Consensus 22 ~~~~~~v~il~G~GnNGgD---gl~~AR~L~~~G~~V~v~~~~~ 62 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGD---GLVAARHLANRGYNVTVYLVGP 62 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHH---HHHHHHHHHHTTCEEEEEEEES
T ss_pred ccCCCeEEEEECCCCChHH---HHHHHHHHHHCCCeEEEEEEec
Confidence 3567888888887666655 4567899999999999976644
No 205
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=40.66 E-value=1.8e+02 Score=32.59 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=54.9
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccC--hhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEE-
Q 001646 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAA--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIA- 454 (1038)
Q Consensus 378 kLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~--~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIa- 454 (1038)
.++++|... .....+++.++..|-.--.=+|+|- .+.+...+..-|++|...-.. =..++.||-..|+|||+
T Consensus 73 ~Il~Vstr~--~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~---d~qAI~EA~~lnIPvIal 147 (249)
T PTZ00254 73 DVVVVSSRP--YGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRT---DHQAIREASYVNIPVIAL 147 (249)
T ss_pred cEEEEEcCH--HHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCCc---chHHHHHHHHhCCCEEEE
Confidence 456666222 1235566666655433211123431 133333445566766655333 26799999999999998
Q ss_pred cCCcccccccccCccEEEEcCCC-HHHHHHHHHHHHHc
Q 001646 455 PDLSNIRKYVDDRVNGYLFPKEN-IKALTHIILQVITN 491 (1038)
Q Consensus 455 TdvgGi~EiV~dG~nGlLv~~~D-~eaLAeAI~~LLsD 491 (1038)
.|.-..+++|. +.+|.+| .-.-...|..++..
T Consensus 148 ~DTds~p~~VD-----y~IP~Ndds~~SI~li~~lLar 180 (249)
T PTZ00254 148 CDTDSPLEYVD-----IAIPCNNRGKESIALMYWLLAR 180 (249)
T ss_pred ecCCCCcccCc-----eeeCCCCchHHHHHHHHHHHHH
Confidence 45555566552 4455543 23333444444444
No 206
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.44 E-value=1.1e+02 Score=33.17 Aligned_cols=87 Identities=7% Similarity=0.054 Sum_probs=51.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~ 225 (1038)
+|+++.+++...-...++..+.+.+++.||+|.+.....+. .... .....+...++|.|++....
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~-~~~~--------------~~i~~~~~~~~Dgiii~~~~ 65 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQGDL-TKQI--------------ADVEDLLTRGVNVLIINPVD 65 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCH-HHHH--------------HHHHHHHHcCCCEEEEecCC
Confidence 47888888776667788889999999999999876543221 1110 11222344679988886543
Q ss_pred hhHHHHHHHhCCCCCCCEEEEE
Q 001646 226 AKVVISNIMQEPFKSLPLVWTI 247 (1038)
Q Consensus 226 ~~~~la~La~~~~~gIPvI~ti 247 (1038)
.......+......++|+|..-
T Consensus 66 ~~~~~~~i~~~~~~~iPvV~~~ 87 (282)
T cd06318 66 PEGLVPAVAAAKAAGVPVVVVD 87 (282)
T ss_pred ccchHHHHHHHHHCCCCEEEec
Confidence 2111111111124578987653
No 207
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=39.94 E-value=97 Score=36.87 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=61.8
Q ss_pred CcCHHHHHHHHcCCCEEEcCCc---ccccccccCccEEEEcC-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-Hh
Q 001646 437 TFPEILVKALCFRKPIIAPDLS---NIRKYVDDRVNGYLFPK-ENIKALTHIILQVITNGKISPFARNIASIGRRSV-KN 511 (1038)
Q Consensus 437 GFPlvLLEAMA~GkPVIaTdvg---Gi~EiV~dG~nGlLv~~-~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~ 511 (1038)
+++..+---|+||-.|+..+.. -..+.+...++=+-+.. ++.++|.++|..+.++ ++..++++++|++.+ +.
T Consensus 225 ~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~---~~~A~~IA~~g~~f~~~~ 301 (395)
T PF05686_consen 225 AWSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAH---DDEAQRIAENGQRFAREY 301 (395)
T ss_pred eeehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccC---hHHHHHHHHHHHHHHHHH
Confidence 4555666667777777764322 11223344454444443 4789999999999999 999999999999999 55
Q ss_pred hCHHHHHHHHHHHHHHh
Q 001646 512 LMALETIEGYAMLLENV 528 (1038)
Q Consensus 512 Fs~e~ia~~Y~~Lye~v 528 (1038)
.+.+.+..-+..++.+.
T Consensus 302 L~~~~~~~Y~~~LL~eY 318 (395)
T PF05686_consen 302 LTMEDVYCYWRRLLLEY 318 (395)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 77777777777777554
No 208
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=39.55 E-value=1.7e+02 Score=26.42 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=39.7
Q ss_pred CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCC-CCCchHHHHHHHHHHcCCCC
Q 001646 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGD-STSNYSVVIEAIAHNLHYPL 405 (1038)
Q Consensus 334 ~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~-~~e~Y~~~LeeLa~qLgL~d 405 (1038)
...|++.|+|.. .+...+..++.++..++|+ ..+|-||. .. -.....+.+.+.+++-
T Consensus 3 g~rVli~GgR~~-----~D~~~i~~~Ld~~~~~~~~--------~~lvhGga~~G--aD~iA~~wA~~~gv~~ 60 (71)
T PF10686_consen 3 GMRVLITGGRDW-----TDHELIWAALDKVHARHPD--------MVLVHGGAPKG--ADRIAARWARERGVPV 60 (71)
T ss_pred CCEEEEEECCcc-----ccHHHHHHHHHHHHHhCCC--------EEEEECCCCCC--HHHHHHHHHHHCCCee
Confidence 346777775654 3788899999999998887 45777765 32 2245567777777764
No 209
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=38.91 E-value=1e+02 Score=31.33 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHcCCCCceEEEccChh------------------------------h--HHHHHHhcCEEEEcc--cC
Q 001646 388 SNYSVVIEAIAHNLHYPLGVVKHMAAEG------------------------------D--VDSVLNTADVVIYGS--FL 433 (1038)
Q Consensus 388 e~Y~~~LeeLa~qLgL~d~~V~flG~~e------------------------------d--V~~lLaaADIfVlPS--~~ 433 (1038)
..+++++++-+++.+|+ |.|.+++. . ...++..||++|.-- .+
T Consensus 11 tdWRe~I~~ga~~~~L~---v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrFGekY 87 (144)
T TIGR03646 11 TDWREEIKEGAKSKNLP---IVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALFGEKY 87 (144)
T ss_pred chHHHHHHHHHHHcCCC---eEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEechHH
Confidence 34567777777777765 56666431 1 245899999998643 11
Q ss_pred CcC-CcCHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 001646 434 EEQ-TFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (1038)
Q Consensus 434 Eeq-GFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LL 489 (1038)
- | .-.+=.--|.|.|+|.|.-.-..+..-+.+=.+.-+.-..+++...+.+..++
T Consensus 88 K-QWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 88 K-QWNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred H-HHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 1 0 01122345789999999865444433332211112222345666666655443
No 210
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=38.88 E-value=2.4e+02 Score=31.68 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=24.9
Q ss_pred cccccCccEEEEcCCCHHH----HHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001646 462 KYVDDRVNGYLFPKENIKA----LTHIILQVITNGKISPFARNIASIGR 506 (1038)
Q Consensus 462 EiV~dG~nGlLv~~~D~ea----LAeAI~~LLsDg~l~elr~~mg~~ar 506 (1038)
++.-..-.|+++|.+.+++ |.+++.+++++ ++..+.+.+.+.
T Consensus 199 d~~~~~~~g~~~p~gtp~~~~~~l~~a~~~~~~~---pe~~~~~~~~g~ 244 (274)
T PF03401_consen 199 DIVFGSWRGLFAPKGTPDEIVDKLADAIKKALED---PEFQEFLEKMGL 244 (274)
T ss_dssp TG--EEEEEEEEETTS-HHHHHHHHHHHHHHHT----HHHHHHHHHHTE
T ss_pred ceeeeeeeeeecCCCCCHHHHHHHHHHHHHHhCC---HHHHHHHHHCCC
Confidence 3333345688999887666 55666677778 776666655543
No 211
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.77 E-value=1.6e+02 Score=31.71 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=30.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSL 182 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~ 182 (1038)
||++|.+++.-.-....+..+...+.+.||.+.++..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 37 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGP 37 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 5788888876666677788888889999999988854
No 212
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=38.57 E-value=1.6e+02 Score=35.32 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=54.2
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCC
Q 001646 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (1038)
Q Consensus 378 kLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdv 457 (1038)
.+.|+.-.. +..+.++++++- ..... .+++...+..+|++|..+...+ ++. -..+.-+.|.+.-|.
T Consensus 207 ~I~V~nRt~-----~ra~~La~~~~~----~~~~~-~~~l~~~l~~aDiVI~aT~a~~---~vi-~~~~~~~~~~~~iDL 272 (414)
T PRK13940 207 QIMLANRTI-----EKAQKITSAFRN----ASAHY-LSELPQLIKKADIIIAAVNVLE---YIV-TCKYVGDKPRVFIDI 272 (414)
T ss_pred EEEEECCCH-----HHHHHHHHHhcC----CeEec-HHHHHHHhccCCEEEECcCCCC---eeE-CHHHhCCCCeEEEEe
Confidence 566766332 345677775531 11111 2678889999999999886553 332 234456789988888
Q ss_pred ccccccccc---CccEEEEcCCCHHHHHHHHHH
Q 001646 458 SNIRKYVDD---RVNGYLFPKENIKALTHIILQ 487 (1038)
Q Consensus 458 gGi~EiV~d---G~nGlLv~~~D~eaLAeAI~~ 487 (1038)
+-.+++=.+ -.+-.++ |.++|.+.+.+
T Consensus 273 avPRdidp~v~~l~~v~l~---~iDdl~~i~~~ 302 (414)
T PRK13940 273 SIPQALDPKLGELEQNVYY---CVDDINAVIED 302 (414)
T ss_pred CCCCCCCccccCcCCeEEE---eHHHHHHHHHH
Confidence 766664321 1123444 45666554443
No 213
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=38.08 E-value=1.2e+02 Score=37.15 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=50.2
Q ss_pred eEEEEcCCCCCChH-------HHHHHHHHHHHHHcC-CeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCc
Q 001646 146 QLALVFPDLLIDPQ-------QLQMVTIAIALREIG-YAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYD 217 (1038)
Q Consensus 146 rIaiV~~~L~iGGa-------e~~v~~LAkaL~k~G-~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpD 217 (1038)
||++|.|+...+|. ..-+..+|..|.+.| |+|.++-....+. ....+...+...+||
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~---------------~~~~~~~~l~~~~pd 65 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDAMTGPL---------------TDEKLVERLRAHCPD 65 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecccccCC---------------CHHHHHHHHHhcCcC
Confidence 57788887665554 345778889999999 8999985432211 112334456667888
Q ss_pred EEEEcCCchhH----HHHHHHhCCCCCCCEEEE
Q 001646 218 GILVNSLEAKV----VISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 218 IVhvhs~~~~~----~la~La~~~~~gIPvI~t 246 (1038)
+|-+....... -+...+.+..+++++|+-
T Consensus 66 vVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 66 LVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred EEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 88776543211 112223333456666643
No 214
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=38.01 E-value=75 Score=36.97 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=36.9
Q ss_pred CCCceEEEEcCCCCCChHH--HHHHHHHHHHHHcCCeEEEEEcCCCc
Q 001646 142 YRKPQLALVFPDLLIDPQQ--LQMVTIAIALREIGYAIQVYSLEDGR 186 (1038)
Q Consensus 142 ~R~prIaiV~~~L~iGGae--~~v~~LAkaL~k~G~eV~V~t~~~g~ 186 (1038)
.+-|.=+++++|+..||.. -.+..+|+.|+++|+.+.|++-+.+.
T Consensus 43 ~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 43 YRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred ccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 4445557899999998875 47899999999999999999976643
No 215
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=37.29 E-value=1.6e+02 Score=26.92 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCCCceEEEccChhhHHHHHHh--cCEEEEcccCCcCCcCHHHHHHHHc---CCCEEE-cCCcc---cc
Q 001646 391 SVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF---RKPIIA-PDLSN---IR 461 (1038)
Q Consensus 391 ~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaa--ADIfVlPS~~EeqGFPlvLLEAMA~---GkPVIa-TdvgG---i~ 461 (1038)
...++...+..|+.. |......++....+.. .|++++-...+. +-+..+++.+.. ++|+|. |+... ..
T Consensus 11 ~~~l~~~l~~~~~~~--v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 11 RELLEKLLERAGYEE--VTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp HHHHHHHHHHTTEEE--EEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHH
T ss_pred HHHHHHHHHhCCCCE--EEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEecCCCCHHHHH
Confidence 355566666555533 5555555666665554 477887765553 567777777654 567664 44333 23
Q ss_pred cccccCccEEEEcCCCHHHHHHHHH
Q 001646 462 KYVDDRVNGYLFPKENIKALTHIIL 486 (1038)
Q Consensus 462 EiV~dG~nGlLv~~~D~eaLAeAI~ 486 (1038)
+.+.-|..|++..|-++++|.++|.
T Consensus 88 ~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 88 EALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHTTESEEEESSSSHHHHHHHHH
T ss_pred HHHHCCCCEEEECCCCHHHHHHhhC
Confidence 4557788999999999999998874
No 216
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=36.79 E-value=1.5e+02 Score=31.99 Aligned_cols=82 Identities=22% Similarity=0.169 Sum_probs=53.8
Q ss_pred EEEEEEe--CCCCCchHHHHHHHHHHc-CCCCceEEEccChhhHHHHHHhcCEEEEccc--------CCcCCcCHHHHHH
Q 001646 377 IKVMILS--GDSTSNYSVVIEAIAHNL-HYPLGVVKHMAAEGDVDSVLNTADVVIYGSF--------LEEQTFPEILVKA 445 (1038)
Q Consensus 377 vkLVIVG--G~~~e~Y~~~LeeLa~qL-gL~d~~V~flG~~edV~~lLaaADIfVlPS~--------~EeqGFPlvLLEA 445 (1038)
.+++++. ....+.|...+++...++ |... .+...-..++..+.+..||++++|.- +.+.++--.+-++
T Consensus 32 ~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~-~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 32 PKVLFVPTASGDRDEYTARFYAAFESLRGVEV-SHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhccCcEE-EEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHHH
Confidence 5788887 333445667777777777 7755 22222223577889999999999961 1111455556677
Q ss_pred HHcCCCEEEcCCcc
Q 001646 446 LCFRKPIIAPDLSN 459 (1038)
Q Consensus 446 MA~GkPVIaTdvgG 459 (1038)
...|+|++.+-.|.
T Consensus 111 ~~~g~~i~G~SAGa 124 (212)
T cd03146 111 LERGVVYIGWSAGS 124 (212)
T ss_pred HHCCCEEEEECHhH
Confidence 77899999877664
No 217
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=35.72 E-value=1.9e+02 Score=32.07 Aligned_cols=87 Identities=13% Similarity=-0.054 Sum_probs=50.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~ 225 (1038)
+|++|.+..........+..+.+.+.+.|++|.++........... .. ...+...++|.|++....
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~-------------~~-i~~~~~~~~DgiIi~~~~ 66 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQV-------------QI-IEDLIAQGVDAIAVVPND 66 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-------------HH-HHHHHhcCCCEEEEecCC
Confidence 4778888777667777888888999999999998644332211110 11 112233579999887654
Q ss_pred hhHHHHHHHhCCCCCCCEEEE
Q 001646 226 AKVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 226 ~~~~la~La~~~~~gIPvI~t 246 (1038)
.......+......++|+|..
T Consensus 67 ~~~~~~~~~~~~~~~iPvV~v 87 (298)
T cd06302 67 PDALEPVLKKAREAGIKVVTH 87 (298)
T ss_pred HHHHHHHHHHHHHCCCeEEEE
Confidence 321112111112457897764
No 218
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=35.56 E-value=2.6e+02 Score=29.61 Aligned_cols=87 Identities=13% Similarity=0.030 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHHHc--CCeEEEEEcCCCcchhhhhh--cCceEEEcc--cchhHHHHhhhcCCcEEEEcCCchhHHH
Q 001646 157 DPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRN--IGVPVAILQ--TGREKASFVNWLNYDGILVNSLEAKVVI 230 (1038)
Q Consensus 157 GGae~~v~~LAkaL~k~--G~eV~V~t~~~g~~~~~~e~--~gI~v~~l~--~~rkl~~lI~~~kpDIVhvhs~~~~~~l 230 (1038)
-|--..+..+++.|.+. |+.|.+-+..........+. -.+.+..++ .......+++..+||++++.....-+.+
T Consensus 31 vGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPnl 110 (186)
T PF04413_consen 31 VGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPNL 110 (186)
T ss_dssp HHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEEES----HHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHHH
Confidence 35667888999999987 77877776655332211111 122333344 3344577888899999988776653333
Q ss_pred HHHHhCCCCCCCEEE
Q 001646 231 SNIMQEPFKSLPLVW 245 (1038)
Q Consensus 231 a~La~~~~~gIPvI~ 245 (1038)
.. ..+..++|++.
T Consensus 111 l~--~a~~~~ip~~L 123 (186)
T PF04413_consen 111 LR--EAKRRGIPVVL 123 (186)
T ss_dssp HH--H-----S-EEE
T ss_pred HH--HHhhcCCCEEE
Confidence 33 33467899764
No 219
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.91 E-value=2.1e+02 Score=31.31 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=52.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~ 225 (1038)
+|++|.+++.......++..+.+.+.+.||++.+.....+... . ......+...++|.|++....
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~-~--------------~~~i~~l~~~~vdgiil~~~~ 66 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDGRGSEAG-Q--------------AAALNQAIALKPDGIVLGGVD 66 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECCCCCHHH-H--------------HHHHHHHHHcCCCEEEEcCCC
Confidence 5788888887777778888999999999999988654322111 0 111233455789999887543
Q ss_pred hhHHHHHHHhCCCCCCCEEEE
Q 001646 226 AKVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 226 ~~~~la~La~~~~~gIPvI~t 246 (1038)
.......+......++|+|..
T Consensus 67 ~~~~~~~~~~~~~~~iPvV~~ 87 (280)
T cd06315 67 AAELQAELELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHHHHHHHHCCCCEEEe
Confidence 211111111112357898754
No 220
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=34.90 E-value=2.5e+02 Score=31.47 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=60.5
Q ss_pred CcCHHHHHHHHcCCCEEEcCCc---ccccccccCccEEEEcCC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh-
Q 001646 437 TFPEILVKALCFRKPIIAPDLS---NIRKYVDDRVNGYLFPKE-NIKALTHIILQVITNGKISPFARNIASIGRRSVKN- 511 (1038)
Q Consensus 437 GFPlvLLEAMA~GkPVIaTdvg---Gi~EiV~dG~nGlLv~~~-D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~- 511 (1038)
+++..+.--|+|+-.|+..... -..+.+...++=+-+..+ +.++|.++|..+.++ ++..++++++|++.+++
T Consensus 156 ~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~---~~~a~~Ia~~~~~~~~~~ 232 (256)
T smart00672 156 AWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEH---DKKAQEIGKRGSEFIQQN 232 (256)
T ss_pred cchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhC---HHHHHHHHHHHHHHHHHH
Confidence 4666677777888777765532 112233444432223322 224599999999999 99999999999999955
Q ss_pred hCHHHHHHHHHHHHHHh
Q 001646 512 LMALETIEGYAMLLENV 528 (1038)
Q Consensus 512 Fs~e~ia~~Y~~Lye~v 528 (1038)
.+.+.+..-+..++.+.
T Consensus 233 L~~~~~~~Y~~~ll~ey 249 (256)
T smart00672 233 LSMEDVYDYMFHLLQEY 249 (256)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 78888888888777653
No 221
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.78 E-value=56 Score=30.92 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=48.6
Q ss_pred EEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHH--cCCCEEEc
Q 001646 379 VMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC--FRKPIIAP 455 (1038)
Q Consensus 379 LVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA--~GkPVIaT 455 (1038)
|+++| |-...-.-..+++.+++.|++- .|.-.+. .++......+|++++.+... +-..-++..+ .|+||+.-
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~-~v~a~~~-~~~~~~~~~~Dvill~pqi~---~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPV-KIAAGSY-GAAGEKLDDADVVLLAPQVA---YMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcE-EEEEecH-HHHHhhcCCCCEEEECchHH---HHHHHHHHHhhhcCCCEEEe
Confidence 34444 6655455678888899888875 4554443 46777778899999887544 3344445444 47799886
Q ss_pred CC
Q 001646 456 DL 457 (1038)
Q Consensus 456 dv 457 (1038)
+.
T Consensus 82 ~~ 83 (95)
T TIGR00853 82 NG 83 (95)
T ss_pred Ch
Confidence 53
No 222
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=34.69 E-value=44 Score=31.56 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=29.8
Q ss_pred HHHHhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeC
Q 001646 207 KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (1038)
Q Consensus 207 l~~lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg 249 (1038)
+..++...+.||||.|+.......-.+...+..|+++|+|-|.
T Consensus 42 ~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTDHS 84 (90)
T PF08288_consen 42 LRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTDHS 84 (90)
T ss_pred HHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeeccc
Confidence 3445566899999999876632333344345778999999993
No 223
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=34.57 E-value=2.1e+02 Score=31.10 Aligned_cols=87 Identities=13% Similarity=0.142 Sum_probs=49.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~ 225 (1038)
+|++|++++...-...++..+.+.+.+.|+++.++.....+.... + ...+..+ ...++|.|++....
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~-~-----------~~~i~~~-~~~~vdgiI~~~~~ 67 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAK-Q-----------IAQLEDC-AAWGADAILLGAVS 67 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHH-H-----------HHHHHHH-HHcCCCEEEEcCCC
Confidence 478888887655556677778888999999998875432111100 0 0111222 34589998887644
Q ss_pred hhHHHHHHHhCCCCCCCEEEE
Q 001646 226 AKVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 226 ~~~~la~La~~~~~gIPvI~t 246 (1038)
..... .+......++|+|..
T Consensus 68 ~~~~~-~~~~~~~~giPvV~~ 87 (268)
T cd06306 68 PDGLN-EILQQVAASIPVIAL 87 (268)
T ss_pred hhhHH-HHHHHHHCCCCEEEe
Confidence 32121 112112467898855
No 224
>PLN03015 UDP-glucosyl transferase
Probab=34.51 E-value=72 Score=38.87 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=46.2
Q ss_pred EEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcc----ccccc-ccCccEEEEc------CC
Q 001646 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYV-DDRVNGYLFP------KE 476 (1038)
Q Consensus 408 V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgG----i~EiV-~dG~nGlLv~------~~ 476 (1038)
+.+.++..+. ++|+...+-.+-+ +.|+ ++++||+++|+|+|+-+..+ ...++ +.-..|+-+. .-
T Consensus 337 l~v~~W~PQ~-~vL~h~~vg~fvt---H~Gw-nS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQV-EILSHRSIGGFLS---HCGW-SSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCHH-HHhccCccCeEEe---cCCc-hhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 4455655332 2455544544444 2133 58889999999999976543 22333 2223355442 12
Q ss_pred CHHHHHHHHHHHHH
Q 001646 477 NIKALTHIILQVIT 490 (1038)
Q Consensus 477 D~eaLAeAI~~LLs 490 (1038)
+.++++++|.+++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 57899999999995
No 225
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.76 E-value=1.8e+02 Score=31.18 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=50.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~ 225 (1038)
+|++|.+.+...-....+..+.+++++.|+++.++....++ .... ..+..++. .++|.|++....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~-~~~~-------------~~l~~~~~-~~vdgii~~~~~ 65 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAGGDD-AKQA-------------DQIDQAIA-QKVDAIIIQHGR 65 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCCCCH-HHHH-------------HHHHHHHH-cCCCEEEEecCC
Confidence 47788887766666777888899999999999886543211 1000 11223333 479998886543
Q ss_pred hhHHHHHHHhCCCCCCCEEEE
Q 001646 226 AKVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 226 ~~~~la~La~~~~~gIPvI~t 246 (1038)
.......+......++|+|..
T Consensus 66 ~~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 66 AEVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred hhhhHHHHHHHHHcCCCEEEe
Confidence 211111111112457897754
No 226
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=33.25 E-value=2.6e+02 Score=30.27 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=54.6
Q ss_pred EEEEEEe--CCCCCchHHHHHHHHHHcCCCCceEEEcc-----ChhhHHHHHHhcCEEEEcc--------cCCcCCcCHH
Q 001646 377 IKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-----AEGDVDSVLNTADVVIYGS--------FLEEQTFPEI 441 (1038)
Q Consensus 377 vkLVIVG--G~~~e~Y~~~LeeLa~qLgL~d~~V~flG-----~~edV~~lLaaADIfVlPS--------~~EeqGFPlv 441 (1038)
.+++++. +.....+.+.+.+..+++|.....+..+. ...++.+.+..||++++.. .+.+.++--.
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~ 109 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDA 109 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHH
Confidence 4556655 43345566777777788888752222222 2256778899999998864 1221134456
Q ss_pred HHHHHHcCCCEEEcCCcccc
Q 001646 442 LVKALCFRKPIIAPDLSNIR 461 (1038)
Q Consensus 442 LLEAMA~GkPVIaTdvgGi~ 461 (1038)
+.++...|+|++.+..|.+.
T Consensus 110 l~~~~~~G~v~~G~SAGA~i 129 (217)
T cd03145 110 LRKVYRGGVVIGGTSAGAAV 129 (217)
T ss_pred HHHHHHcCCEEEEccHHHHh
Confidence 77888899999988766543
No 227
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=33.02 E-value=2.7e+02 Score=31.03 Aligned_cols=85 Identities=20% Similarity=0.281 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCC
Q 001646 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (1038)
Q Consensus 145 prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~ 224 (1038)
..|.+|+|++..-=....+..+-+.+.+.||.+.++...+.+... .....+...+.|.+++.+.
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e----------------~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE----------------EYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH----------------HHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH----------------HHHHHHHhcCCCEEEEecc
Confidence 368899999976667788899999999999999888765533211 1134556678999888766
Q ss_pred chh-HHHHHHHhCCCCCCCEEEEEe
Q 001646 225 EAK-VVISNIMQEPFKSLPLVWTIH 248 (1038)
Q Consensus 225 ~~~-~~la~La~~~~~gIPvI~tiH 248 (1038)
... ..+..+.. . ++|+|+.-.
T Consensus 66 ~~~~~~l~~~~~--~-~iPvV~~~~ 87 (279)
T PF00532_consen 66 ENDDEELRRLIK--S-GIPVVLIDR 87 (279)
T ss_dssp SCTCHHHHHHHH--T-TSEEEEESS
T ss_pred cCChHHHHHHHH--c-CCCEEEEEe
Confidence 553 34444442 2 789876443
No 228
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=33.02 E-value=2.1e+02 Score=30.87 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=29.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcC
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLE 183 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~ 183 (1038)
+|++|.+++.......++..+.+++.+.|+++.++...
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAP 38 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccC
Confidence 47788887765566677778889999999999987643
No 229
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=32.92 E-value=2.1e+02 Score=30.77 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=49.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHc---CCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREI---GYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~---G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvh 222 (1038)
||+++++++.......++..+.+.+.+. |+++.++........... ...+..++. .++|.|++.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~------------~~~~~~~~~-~~vdgiIi~ 67 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQ------------IADIRNLIA-QGVDAIIIN 67 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHH------------HHHHHHHHH-cCCCEEEEe
Confidence 5788999887777788888888889999 996544433221111000 011223333 489999986
Q ss_pred CCchh---HHHHHHHhCCCCCCCEEEE
Q 001646 223 SLEAK---VVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 223 s~~~~---~~la~La~~~~~gIPvI~t 246 (1038)
..... ..+.. + ...++|+|..
T Consensus 68 ~~~~~~~~~~l~~-~--~~~~iPvv~~ 91 (272)
T cd06300 68 PASPTALNPVIEE-A--CEAGIPVVSF 91 (272)
T ss_pred CCChhhhHHHHHH-H--HHCCCeEEEE
Confidence 64421 12222 2 2357897754
No 230
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=32.72 E-value=9.2e+02 Score=28.74 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=51.1
Q ss_pred EEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccc------cc---cCccEEEEcCCCH
Q 001646 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKY------VD---DRVNGYLFPKENI 478 (1038)
Q Consensus 408 V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~Ei------V~---dG~nGlLv~~~D~ 478 (1038)
+..+....++..+|..+|++|. + ++.++.|+|...+|||..-. ...++ .. ...-|-++. +.
T Consensus 271 ~~~vs~~~di~dll~~sDiLIT----D---ySSv~fdf~~l~KPiify~~-D~~~y~~~rg~~~d~~~~~Pg~~~~--~~ 340 (388)
T COG1887 271 VLDVSDNADINDLLLVSDILIT----D---YSSVIFDFMLLDKPIIFYTY-DLEQYDELRGFYLDYKFEAPGEVVE--TQ 340 (388)
T ss_pred eEecccchhHHHHHhhhCEEEe----e---chHHHHHHHHhcCcEEEEec-ChHHHHhhhhhhhhHHhcCCccccc--cH
Confidence 4444445799999999999985 2 57799999999999997421 11222 11 112244443 67
Q ss_pred HHHHHHHHHHHHc
Q 001646 479 KALTHIILQVITN 491 (1038)
Q Consensus 479 eaLAeAI~~LLsD 491 (1038)
+++.++|.....+
T Consensus 341 ~~li~ai~~~~~~ 353 (388)
T COG1887 341 EELIDAIKPYDED 353 (388)
T ss_pred HHHHHHHHhhhcc
Confidence 8899999988886
No 231
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=32.57 E-value=5e+02 Score=28.90 Aligned_cols=118 Identities=17% Similarity=0.135 Sum_probs=63.1
Q ss_pred hhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHH-HHcCCCC
Q 001646 327 KMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIA-HNLHYPL 405 (1038)
Q Consensus 327 klgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa-~qLgL~d 405 (1038)
..++.....+|+|+|++- ++..+++..++=...+.- .+- +.||-.... ......+. +.+.+++
T Consensus 101 Va~vA~r~GiILFv~tn~-------~~~~~ve~aA~r~~gy~~-------~~~-w~~G~lTN~-~~l~g~~~~~~~~~pd 164 (251)
T KOG0832|consen 101 VAHVAHRGGIILFVGTNN-------GFKDLVERAARRAGGYSH-------NRK-WLGGLLTNA-RELFGALVRKFLSLPD 164 (251)
T ss_pred HHHHHhcCCeEEEEecCc-------chHHHHHHHHHHhcCcee-------eee-eccceeecc-hhhcccccccccCCCc
Confidence 334455566999999432 334446665554333332 233 334433210 01111111 1233444
Q ss_pred ceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEE-cCCcccccccccCccEEEEcCCC
Q 001646 406 GVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIA-PDLSNIRKYVDDRVNGYLFPKEN 477 (1038)
Q Consensus 406 ~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIa-TdvgGi~EiV~dG~nGlLv~~~D 477 (1038)
.+.|..-.. .|++|.-...|. -.+++||.-+++|+|+ -|.-..+++|. +.+|.+|
T Consensus 165 -~~~f~~t~~--------~D~vvvln~~e~---~sAilEA~K~~IPTIgIVDtN~~P~liT-----YpVPaND 220 (251)
T KOG0832|consen 165 -ALCFLPTLT--------PDLVVVLNPEEN---HSAILEAAKMAIPTIGIVDTNCNPELIT-----YPVPAND 220 (251)
T ss_pred -ceeecccCC--------cceeEecCcccc---cHHHHHHHHhCCCeEEEecCCCCcccee-----eccCCCC
Confidence 455544331 199888887774 6899999999999987 23334566653 4566543
No 232
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=32.38 E-value=1.5e+02 Score=31.30 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEE
Q 001646 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVW 245 (1038)
Q Consensus 214 ~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~ 245 (1038)
+.||+|+.|+-.+.+++. ...++++|+|.
T Consensus 65 f~PDvI~~H~GWGe~Lfl---kdv~P~a~li~ 93 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFL---KDVFPDAPLIG 93 (171)
T ss_pred CCCCEEEEcCCcchhhhH---HHhCCCCcEEE
Confidence 578999999988743333 33467788763
No 233
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=32.21 E-value=2.5e+02 Score=32.16 Aligned_cols=57 Identities=25% Similarity=0.435 Sum_probs=44.1
Q ss_pred CCCCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCce
Q 001646 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVP 197 (1038)
Q Consensus 141 ~~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~ 197 (1038)
|-..+.+++|+++--++-.+--+.-+.+.|...||.|-|++-.+-.....+..+|-|
T Consensus 13 GWd~lDvilVtGDAYVDHPsFG~AiIgR~Le~~GyrVgIiaQPdw~~~~df~~lG~P 69 (302)
T PF08497_consen 13 GWDELDVILVTGDAYVDHPSFGAAIIGRVLEAHGYRVGIIAQPDWRSPEDFKRLGRP 69 (302)
T ss_pred CCccccEEEEeCcccccCcchhHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHhCCC
Confidence 556678899999887766666666789999999999999998775445566666666
No 234
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.13 E-value=2.9e+02 Score=29.42 Aligned_cols=86 Identities=21% Similarity=0.309 Sum_probs=51.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++|+|+....-...++..+.+.+++.||.+.++.....+.... ......+...++|.|++.....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~vdgiii~~~~~ 67 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYAVTLSMLAEADEEAL--------------RAAVRRLLAQRVDGVIVNAPLD 67 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCeEEEEeCCCCchHHH--------------HHHHHHHHhcCCCEEEEeCCCC
Confidence 67888887766667778888899999999999987643221111 1112223345789988765443
Q ss_pred hHHHHHHHhCCCCCCCEEEEEe
Q 001646 227 KVVISNIMQEPFKSLPLVWTIH 248 (1038)
Q Consensus 227 ~~~la~La~~~~~gIPvI~tiH 248 (1038)
... . +......++|+|..-.
T Consensus 68 ~~~-~-~~~~~~~~ipvv~~~~ 87 (264)
T cd01574 68 DAD-A-ALAAAPADVPVVFVDG 87 (264)
T ss_pred ChH-H-HHHHHhcCCCEEEEec
Confidence 222 1 1111245789876533
No 235
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=31.95 E-value=9.9e+02 Score=28.89 Aligned_cols=96 Identities=26% Similarity=0.299 Sum_probs=57.2
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHH-HHHHcCCCEEEcC
Q 001646 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILV-KALCFRKPIIAPD 456 (1038)
Q Consensus 378 kLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLL-EAMA~GkPVIaTd 456 (1038)
+++|++-.. +.-++++++++..- + ..+++..++..+||++..+-..++-.+...+ +|+..-+..+..|
T Consensus 204 ~i~IaNRT~-----erA~~La~~~~~~~--~----~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livD 272 (414)
T COG0373 204 KITIANRTL-----ERAEELAKKLGAEA--V----ALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVD 272 (414)
T ss_pred EEEEEcCCH-----HHHHHHHHHhCCee--e----cHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEE
Confidence 666666433 67788899887221 1 2379999999999999887554323333333 3334444457778
Q ss_pred Cccccccccc---CccEEEEcCCCHHHHHHHHHH
Q 001646 457 LSNIRKYVDD---RVNGYLFPKENIKALTHIILQ 487 (1038)
Q Consensus 457 vgGi~EiV~d---G~nGlLv~~~D~eaLAeAI~~ 487 (1038)
++-.+++-.+ -.+-++++ +++|.....+
T Consensus 273 iavPRdie~~v~~l~~v~l~~---iDDL~~iv~~ 303 (414)
T COG0373 273 IAVPRDVEPEVGELPNVFLYT---IDDLEEIVEE 303 (414)
T ss_pred ecCCCCCCccccCcCCeEEEe---hhhHHHHHHH
Confidence 8777765432 12345655 4455444443
No 236
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=31.93 E-value=2.4e+02 Score=30.12 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=56.3
Q ss_pred EEEEEEe--CCCCCchHHHHHHHHHHcCCCCceEEEcc--ChhhHHHHHHhcCEEEEcc--------cCCcCCcCHHHHH
Q 001646 377 IKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMA--AEGDVDSVLNTADVVIYGS--------FLEEQTFPEILVK 444 (1038)
Q Consensus 377 vkLVIVG--G~~~e~Y~~~LeeLa~qLgL~d~~V~flG--~~edV~~lLaaADIfVlPS--------~~EeqGFPlvLLE 444 (1038)
.+++++. ......|.+.+.+..+++|.....+.... ..+++.+.+..||+++++. .+.+.+.--.+.+
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~ 109 (210)
T cd03129 30 ARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILK 109 (210)
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHH
Confidence 5677776 33344566778888888888872222221 2367889999999999874 1221123446788
Q ss_pred HHHcCCCEEEcCCccc
Q 001646 445 ALCFRKPIIAPDLSNI 460 (1038)
Q Consensus 445 AMA~GkPVIaTdvgGi 460 (1038)
+...|+|++.+..|.+
T Consensus 110 ~~~~G~v~~G~SAGA~ 125 (210)
T cd03129 110 RVARGVVIGGTSAGAA 125 (210)
T ss_pred HHHcCCeEEEcCHHHH
Confidence 8888999998877654
No 237
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=31.55 E-value=75 Score=30.53 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=47.3
Q ss_pred EEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHH--HHHHcCCCEEEcC
Q 001646 380 MILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILV--KALCFRKPIIAPD 456 (1038)
Q Consensus 380 VIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLL--EAMA~GkPVIaTd 456 (1038)
+++| |-...-..+.+++.+++.|++- .|. -....++...+..+|+++.....- |=..=+ .+-..|+||...+
T Consensus 5 l~C~~GaSSs~la~km~~~a~~~gi~~-~i~-a~~~~e~~~~~~~~Dvill~PQv~---~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 5 VLCAGGGTSGLLANALNKGAKERGVPL-EAA-AGAYGSHYDMIPDYDLVILAPQMA---SYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcE-EEE-EeeHHHHHHhccCCCEEEEcChHH---HHHHHHHHHhhhcCCCEEEeC
Confidence 4445 7555556688999999999864 333 223478888999999998877433 222222 3445588998765
No 238
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=31.32 E-value=80 Score=29.84 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=48.7
Q ss_pred EEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHH--HHHcCCCEEEc
Q 001646 379 VMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVK--ALCFRKPIIAP 455 (1038)
Q Consensus 379 LVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLE--AMA~GkPVIaT 455 (1038)
|+++| |-...-..+.+++.+++.|++- .|...+. .++......+|+++..+... +-..-++ +.-.++||..-
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~-~v~~~~~-~~~~~~~~~~Diil~~Pqv~---~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDA-EIEAVPE-SELEEYIDDADVVLLGPQVR---YMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCce-EEEEecH-HHHHHhcCCCCEEEEChhHH---HHHHHHHHHhccCCCcEEEc
Confidence 45566 7665555678889999999875 5555443 46767788999998887443 2333344 34578898875
Q ss_pred C
Q 001646 456 D 456 (1038)
Q Consensus 456 d 456 (1038)
+
T Consensus 78 ~ 78 (96)
T cd05564 78 D 78 (96)
T ss_pred C
Confidence 5
No 239
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.13 E-value=1.8e+02 Score=33.08 Aligned_cols=104 Identities=9% Similarity=0.052 Sum_probs=59.9
Q ss_pred CCCCCceEEEEcCCCCCChHHHHHHHHHHHHHH--cCCeEEEEEcCCCcchhhhhhcCceEEEcccc--------hhHHH
Q 001646 140 FGYRKPQLALVFPDLLIDPQQLQMVTIAIALRE--IGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKAS 209 (1038)
Q Consensus 140 ~~~R~prIaiV~~~L~iGGae~~v~~LAkaL~k--~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~--------rkl~~ 209 (1038)
+..+++||+++..+ +|.- +..+..+.+. .+++|.++.....+.....+..|+++..++.. ..+..
T Consensus 85 ~~~~~~ri~vl~Sg---~g~n--l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~ 159 (286)
T PRK13011 85 DPAARPKVLIMVSK---FDHC--LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLD 159 (286)
T ss_pred ecccCceEEEEEcC---Cccc--HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCchhhhHHHHHH
Confidence 35567899888776 2332 3334444433 35777777655545555677889987765311 12344
Q ss_pred HhhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchh
Q 001646 210 FVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL 252 (1038)
Q Consensus 210 lI~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L 252 (1038)
.++..++|+|++.+.... +-..++.. ++ .-++.+|..-+
T Consensus 160 ~l~~~~~Dlivlagy~~i-l~~~~l~~-~~--~~iiNiHpSLL 198 (286)
T PRK13011 160 VVEESGAELVVLARYMQV-LSPELCRK-LA--GRAINIHHSFL 198 (286)
T ss_pred HHHHhCcCEEEEeChhhh-CCHHHHhh-cc--CCeEEeccccC
Confidence 577789999998776541 22223322 21 13788996433
No 240
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.56 E-value=82 Score=32.43 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=29.7
Q ss_pred hhHHHHhhhcCCcEEEEcCCchhHH-HHHHHhCCCC-CCCEEEEEe
Q 001646 205 REKASFVNWLNYDGILVNSLEAKVV-ISNIMQEPFK-SLPLVWTIH 248 (1038)
Q Consensus 205 rkl~~lI~~~kpDIVhvhs~~~~~~-la~La~~~~~-gIPvI~tiH 248 (1038)
+++.++++..+||+|++.++....+ +..+..+... ++|++..+-
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3466678889999999999987555 5545433333 678765444
No 241
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=30.52 E-value=8.1e+02 Score=28.76 Aligned_cols=132 Identities=13% Similarity=0.153 Sum_probs=68.2
Q ss_pred EEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccCh------hhHH----HHHHhcCEEEEcccCCcCCcCHHHHHH
Q 001646 377 IKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE------GDVD----SVLNTADVVIYGSFLEEQTFPEILVKA 445 (1038)
Q Consensus 377 vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~------edV~----~lLaaADIfVlPS~~EeqGFPlvLLEA 445 (1038)
-+++++| |... ...++.+.+ .|..+ |.+.+.. +++. .+...+||++..|.......|....|.
T Consensus 175 k~vLvIGaGem~---~l~a~~L~~-~g~~~--i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~ 248 (338)
T PRK00676 175 ASLLFIGYSEIN---RKVAYYLQR-QGYSR--ITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWES 248 (338)
T ss_pred CEEEEEcccHHH---HHHHHHHHH-cCCCE--EEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHH
Confidence 5899999 7654 133334433 56654 7776643 2332 567799999986321111256666666
Q ss_pred HHcCCCEEEcCCccccccc--ccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 001646 446 LCFRKPIIAPDLSNIRKYV--DDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAM 523 (1038)
Q Consensus 446 MA~GkPVIaTdvgGi~EiV--~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~ak~Fs~e~ia~~Y~~ 523 (1038)
+..-.+-+.-|..-.+++= ....+..++ |+++|.+.+.+-+.. +++....+... .++.+.+|-+
T Consensus 249 ~~~~~~r~~iDLAvPRdId~v~~~~~v~Ly---~iDdL~~i~~~n~~~------R~~~~~~ae~i-----I~~~~~~~~~ 314 (338)
T PRK00676 249 LADIPDRIVFDFNVPRTFPWSETPFPHRYL---DMDFISEWVQKHLQC------RKEVNNKHKLS-----LREAAYKQWE 314 (338)
T ss_pred HhhccCcEEEEecCCCCCccccccCCcEEE---EhHHHHHHHHHHHHH------HHHHHHHHHHH-----HHHHHHHHHH
Confidence 5532223445655555432 222333454 566666655443333 33333333333 3445556666
Q ss_pred HHHHh
Q 001646 524 LLENV 528 (1038)
Q Consensus 524 Lye~v 528 (1038)
.|++-
T Consensus 315 ~~~~~ 319 (338)
T PRK00676 315 SYEKK 319 (338)
T ss_pred HHHHH
Confidence 66553
No 242
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=30.15 E-value=2.4e+02 Score=31.25 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=54.1
Q ss_pred EEEEEe--C--CCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEccc--------CCcCCcCHHHHHH
Q 001646 378 KVMILS--G--DSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSF--------LEEQTFPEILVKA 445 (1038)
Q Consensus 378 kLVIVG--G--~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~--------~EeqGFPlvLLEA 445 (1038)
+++++- + .+.+.|.+..++...++|..- ..+-..++..+.+..||++.++-- +...|+--.+-|+
T Consensus 33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v---~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIEV---TGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREA 109 (233)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHHHCCCEE---EEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHH
Confidence 566665 3 233557777778888888763 333333567788999998888741 1112566678899
Q ss_pred HHcCCCEEEcCCccc
Q 001646 446 LCFRKPIIAPDLSNI 460 (1038)
Q Consensus 446 MA~GkPVIaTdvgGi 460 (1038)
...|+|++.+-.|.+
T Consensus 110 ~~~G~~~~G~SAGAi 124 (233)
T PRK05282 110 VKNGTPYIGWSAGAN 124 (233)
T ss_pred HHCCCEEEEECHHHH
Confidence 999999999887764
No 243
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.82 E-value=4.2e+02 Score=29.78 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=25.6
Q ss_pred cCEEE-EcccCCcCCcCHHHHHHHHcCCCEEE-cCCccccccc
Q 001646 424 ADVVI-YGSFLEEQTFPEILVKALCFRKPIIA-PDLSNIRKYV 464 (1038)
Q Consensus 424 ADIfV-lPS~~EeqGFPlvLLEAMA~GkPVIa-TdvgGi~EiV 464 (1038)
-|+++ .-...| -+++.||--+|+|||| .|.-..++.|
T Consensus 157 Pd~l~ViDp~~e----~iAv~EA~klgIPVvAlvDTn~dpd~V 195 (252)
T COG0052 157 PDVLFVIDPRKE----KIAVKEANKLGIPVVALVDTNCDPDGV 195 (252)
T ss_pred CCEEEEeCCcHh----HHHHHHHHHcCCCEEEEecCCCCCccC
Confidence 35544 445566 4799999999999998 4554555555
No 244
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.58 E-value=4.8e+02 Score=30.82 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=74.7
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCEEEEEEe--CCCCC---------chHHHHHHHHHHc
Q 001646 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--GDSTS---------NYSVVIEAIAHNL 401 (1038)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVG--G~~~e---------~Y~~~LeeLa~qL 401 (1038)
+++++++.| ...- .+.+.+++.+..+++.. ++++--| -|... +-.+.+++..++.
T Consensus 99 ~~~l~vIAG-PCsI----Es~eq~l~~A~~lk~~g---------~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~ 164 (352)
T PRK13396 99 NHPVVVVAG-PCSV----ENEEMIVETAKRVKAAG---------AKFLRGGAYKPRTSPYAFQGHGESALELLAAAREAT 164 (352)
T ss_pred CCeEEEEEe-CCcc----cCHHHHHHHHHHHHHcC---------CCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHc
Confidence 444566666 4444 36677888888887654 4555544 22111 1235666777788
Q ss_pred CCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHH-HcCCCEEEcCCcccccccccCccEEEEcCCCHHH
Q 001646 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKAL-CFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKA 480 (1038)
Q Consensus 402 gL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAM-A~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~ea 480 (1038)
|++- +.=.=..+++..+...+|++-.+|+.-. .| .++++. ..|+||+.+.--. .++++
T Consensus 165 Gl~~--~tev~d~~~v~~~~~~~d~lqIga~~~~-n~--~LL~~va~t~kPVllk~G~~----------------~t~ee 223 (352)
T PRK13396 165 GLGI--ITEVMDAADLEKIAEVADVIQVGARNMQ-NF--SLLKKVGAQDKPVLLKRGMA----------------ATIDE 223 (352)
T ss_pred CCcE--EEeeCCHHHHHHHHhhCCeEEECccccc-CH--HHHHHHHccCCeEEEeCCCC----------------CCHHH
Confidence 8875 3333333566666666999999997753 34 455555 5789998764211 24566
Q ss_pred HHHHHHHHHHc
Q 001646 481 LTHIILQVITN 491 (1038)
Q Consensus 481 LAeAI~~LLsD 491 (1038)
+..+++.+.+.
T Consensus 224 ~~~A~e~i~~~ 234 (352)
T PRK13396 224 WLMAAEYILAA 234 (352)
T ss_pred HHHHHHHHHHc
Confidence 66666666554
No 245
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.95 E-value=2.5e+02 Score=26.67 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch--hHHH---HHHHh
Q 001646 161 LQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA--KVVI---SNIMQ 235 (1038)
Q Consensus 161 ~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~--~~~l---a~La~ 235 (1038)
.-+..++..|++.||+|.++-..... ..+...+...+||+|-+..... .... .....
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k 76 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDANVPP------------------EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIK 76 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHH
Confidence 34678889999999999987432211 3445567778999998866222 1112 22233
Q ss_pred CCCCCCCEEEE
Q 001646 236 EPFKSLPLVWT 246 (1038)
Q Consensus 236 ~~~~gIPvI~t 246 (1038)
...+++++++-
T Consensus 77 ~~~p~~~iv~G 87 (121)
T PF02310_consen 77 ERNPNIPIVVG 87 (121)
T ss_dssp TTCTTSEEEEE
T ss_pred hcCCCCEEEEE
Confidence 44556676654
No 246
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=27.80 E-value=1.1e+02 Score=34.53 Aligned_cols=35 Identities=14% Similarity=-0.001 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeC
Q 001646 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (1038)
Q Consensus 214 ~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg 249 (1038)
.+.|++|+.+....++++.++ +...|+|++.|-||
T Consensus 171 P~advyHsvstGyAgl~g~~~-k~~~g~P~lLTEHG 205 (268)
T PF11997_consen 171 PKADVYHSVSTGYAGLLGALA-KYRYGRPFLLTEHG 205 (268)
T ss_pred CCCCEEecCCccHHHHHHHHH-HHHhCCCEEEecCC
Confidence 477999988877655555555 45889999999999
No 247
>PRK09526 lacI lac repressor; Reviewed
Probab=27.48 E-value=4.7e+02 Score=29.37 Aligned_cols=89 Identities=11% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEc
Q 001646 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (1038)
Q Consensus 143 R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvh 222 (1038)
+...|++|++++...-...++..+.+.+.+.||++.++.......... ......+...++|.|++.
T Consensus 62 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~--------------~~~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 62 QSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMVERSGVEAC--------------QAAVNELLAQRVSGVIIN 127 (342)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHH--------------HHHHHHHHhcCCCEEEEe
Confidence 345789999887544455677788888899999999876532111100 011222344678988875
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEE
Q 001646 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 223 s~~~~~~la~La~~~~~gIPvI~t 246 (1038)
.+.....+..+.. ...++|+|+.
T Consensus 128 ~~~~~~~~~~~~~-~~~~iPvV~~ 150 (342)
T PRK09526 128 VPLEDADAEKIVA-DCADVPCLFL 150 (342)
T ss_pred cCCCcchHHHHHh-hcCCCCEEEE
Confidence 3322112222322 2347898764
No 248
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.41 E-value=2.9e+02 Score=29.73 Aligned_cols=83 Identities=10% Similarity=0.090 Sum_probs=51.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc-
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE- 225 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~- 225 (1038)
|++|.+++...-....+..+.+.+.+.||++.+++....+.. .......+...++|.|++....
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~---------------~~~~i~~~~~~~~dgiii~~~~~ 66 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGLSLVLCATRNRPER---------------ELTYLRWLDTNHVDGLIFVTNRP 66 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH---------------HHHHHHHHHHCCCCEEEEeCCCC
Confidence 678888876555667788888999999999988865432110 1112334456689998886532
Q ss_pred hhHHHHHHHhCCCCCCCEEEEE
Q 001646 226 AKVVISNIMQEPFKSLPLVWTI 247 (1038)
Q Consensus 226 ~~~~la~La~~~~~gIPvI~ti 247 (1038)
....+..+. ..++|+|+.-
T Consensus 67 ~~~~~~~~~---~~~~pvV~i~ 85 (269)
T cd06293 67 DDGALAKLI---NSYGNIVLVD 85 (269)
T ss_pred CHHHHHHHH---hcCCCEEEEC
Confidence 212233333 2357877653
No 249
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=27.32 E-value=2.1e+02 Score=30.23 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=54.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|+++-+ ...|.....+..++..+ .|++++++...... .|+.-|-.++ ..........+|+|++.+...
T Consensus 3 ILlle~-y~ggSHk~~~~~L~~~~---~~~~~lltLP~r~w--~WRmRg~AL~------~a~~~~~~~~~dll~aTsmld 70 (168)
T PF12038_consen 3 ILLLEP-YYGGSHKQWADGLAAHS---EHEWTLLTLPARKW--HWRMRGAALY------FAQQIPLSHSYDLLFATSMLD 70 (168)
T ss_pred EEEEcc-ccccCHHHHHHHHHHhc---cCCEEEEEcCCCcc--ccccCCCHHH------HhhccccccCCCEEEeecccc
Confidence 444433 33344444455555555 57899998854221 1222111111 012233446789999999887
Q ss_pred hHHHHHHHhCCCCCCCEEEEEeCchhH
Q 001646 227 KVVISNIMQEPFKSLPLVWTIHEGTLA 253 (1038)
Q Consensus 227 ~~~la~La~~~~~gIPvI~tiHg~~L~ 253 (1038)
.+.+..+.. ...++|.+..+|++.+.
T Consensus 71 La~l~gL~p-~l~~~p~ilYFHENQl~ 96 (168)
T PF12038_consen 71 LATLRGLRP-DLANVPKILYFHENQLA 96 (168)
T ss_pred HHHHHhhcc-CCCCCCEEEEEecCccc
Confidence 666666664 35779999999996665
No 250
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.04 E-value=2.6e+02 Score=30.74 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=51.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~ 225 (1038)
.|++|++++...-...++..+.+.+.+.|+++.++....++.. .. ..+.. +...++|.|++....
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~~-------------~~i~~-~~~~~vdgiii~~~~ 65 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANGDPAK-QI-------------SQIEN-MIAKGVDVLVIAPVD 65 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHH-HH-------------HHHHH-HHHcCCCEEEEecCC
Confidence 3678888877666777888888999999999999865432211 10 11122 234579988876533
Q ss_pred hhHHHHHHHhCCCCCCCEEEEE
Q 001646 226 AKVVISNIMQEPFKSLPLVWTI 247 (1038)
Q Consensus 226 ~~~~la~La~~~~~gIPvI~ti 247 (1038)
.......+......++|+|..-
T Consensus 66 ~~~~~~~l~~l~~~~ipvV~~~ 87 (288)
T cd01538 66 GEALASAVEKAADAGIPVIAYD 87 (288)
T ss_pred hhhHHHHHHHHHHCCCCEEEEC
Confidence 2111111111123578987653
No 251
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.97 E-value=1.7e+02 Score=35.38 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=62.2
Q ss_pred cccchhhhhhhcccccccccccccccccC--CCCCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc---
Q 001646 112 LPLKLMEKFQSEDKDVNLTSVFHRKLHRF--GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR--- 186 (1038)
Q Consensus 112 ~p~~~~~rf~~~~~~~~~~~~~~~~~~r~--~~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~--- 186 (1038)
.|.....+...++- -...|...... ..++|.+.+..+ +.-+|=...+-.||..|++.|+.|-+++.....
T Consensus 69 ~p~q~~iKiV~eEL----v~llG~~~~~~~l~~~~P~vImmvG-LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA 143 (451)
T COG0541 69 TPGQQFIKIVYEEL----VKLLGGENSELNLAKKPPTVILMVG-LQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA 143 (451)
T ss_pred CHHHHHHHHHHHHH----HHHhCCCCcccccCCCCCeEEEEEe-ccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH
Confidence 45555556666662 22212111112 245566655554 666777888999999999999999999875421
Q ss_pred ---chhhhhhcCceEEEcccchhHHH-------HhhhcCCcEEEEcCC
Q 001646 187 ---AHEVWRNIGVPVAILQTGREKAS-------FVNWLNYDGILVNSL 224 (1038)
Q Consensus 187 ---~~~~~e~~gI~v~~l~~~rkl~~-------lI~~~kpDIVhvhs~ 224 (1038)
+...-+..+++++.......... ..+...+|+|++.+.
T Consensus 144 ~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTA 191 (451)
T COG0541 144 IEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 22333556777665532222221 233356777777653
No 252
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=26.34 E-value=50 Score=42.88 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=24.2
Q ss_pred hHHHHHHHhHHHHHHHhhcHHHHHHHHHhhc
Q 001646 982 FEKERHLRNKLKEKRKQQSKDKQTRQKRKRR 1012 (1038)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1038)
..||||.|.|++.||..+.+|=-+|||-++.
T Consensus 717 ~~rErelrERE~Rere~reReLrdRlK~gfe 747 (982)
T PF03154_consen 717 AARERELREREIRERELRERELRDRLKPGFE 747 (982)
T ss_pred HhhhhhhhhhhhhhHHHHHHHHHHhhccccc
Confidence 4578888888888888777774499998876
No 253
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=26.09 E-value=2.9e+02 Score=26.12 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=43.6
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHH--hcCEEEEcccCCcCCcCHHHHHHHHcCCCEEE
Q 001646 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (1038)
Q Consensus 377 vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLa--aADIfVlPS~~EeqGFPlvLLEAMA~GkPVIa 454 (1038)
++++-+-.+.. +..++.+++++++- ..++.++++ ..|+++..+... .-.-.+.+|+..|++|++
T Consensus 26 ~~v~~v~d~~~----~~~~~~~~~~~~~~--------~~~~~~ll~~~~~D~V~I~tp~~--~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 26 FEVVAVCDPDP----ERAEAFAEKYGIPV--------YTDLEELLADEDVDAVIIATPPS--SHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp EEEEEEECSSH----HHHHHHHHHTTSEE--------ESSHHHHHHHTTESEEEEESSGG--GHHHHHHHHHHTTSEEEE
T ss_pred cEEEEEEeCCH----HHHHHHHHHhcccc--------hhHHHHHHHhhcCCEEEEecCCc--chHHHHHHHHHcCCEEEE
Confidence 55443335543 56677777776652 246777777 678888776444 246688999999999887
Q ss_pred c
Q 001646 455 P 455 (1038)
Q Consensus 455 T 455 (1038)
-
T Consensus 92 E 92 (120)
T PF01408_consen 92 E 92 (120)
T ss_dssp E
T ss_pred E
Confidence 4
No 254
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=25.99 E-value=2e+02 Score=30.01 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=32.0
Q ss_pred EEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEc
Q 001646 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (1038)
Q Consensus 408 V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaT 455 (1038)
|....+...+.++++.||++|--. | ..+++|.+..|+|.|+.
T Consensus 65 id~y~f~psl~e~I~~AdlVIsHA-----G-aGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 65 IDGYDFSPSLTEDIRSADLVISHA-----G-AGSCLETLRLGKPLIVV 106 (170)
T ss_pred EEEEecCccHHHHHhhccEEEecC-----C-cchHHHHHHcCCCEEEE
Confidence 334445588999999999998644 2 45899999999998764
No 255
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=25.86 E-value=4.1e+02 Score=28.74 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=50.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++|++++...-....+..+.+.+.+.||++.+++..... . . ...+...+...++|.|++.....
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~-~-~-------------~~~~~~~l~~~~vdgvi~~~~~~ 66 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLEQRYDLALFPLLSLA-R-L-------------KRYLESTTLAYLTDGLLLASYDL 66 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCcH-H-H-------------HHHHHHHHHhcCCCEEEEecCcc
Confidence 6778887665455677888889999999999998754211 0 0 01112234456799888876432
Q ss_pred hHHHHHHHhCCCCCCCEEEEE
Q 001646 227 KVVISNIMQEPFKSLPLVWTI 247 (1038)
Q Consensus 227 ~~~la~La~~~~~gIPvI~ti 247 (1038)
.......+ ...++|+|..-
T Consensus 67 ~~~~~~~l--~~~~iPvv~~~ 85 (269)
T cd06297 67 TERLAERR--LPTERPVVLVD 85 (269)
T ss_pred ChHHHHHH--hhcCCCEEEEc
Confidence 22222222 23578987653
No 256
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=25.72 E-value=3.7e+02 Score=29.65 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=35.6
Q ss_pred ccCCCCCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcC
Q 001646 138 HRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLE 183 (1038)
Q Consensus 138 ~r~~~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~ 183 (1038)
....+.+..|+++.+++...-....+..+.+.+++.|+++.++...
T Consensus 20 ~~~~~~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~ 65 (295)
T PRK10653 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 (295)
T ss_pred CCccccCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3444556788999998776667778888999999999999887543
No 257
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.37 E-value=3.5e+02 Score=29.69 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=26.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEE
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYS 181 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t 181 (1038)
+|++|.++....-...++..+.+.+.+.|+++.++.
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 36 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATT 36 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEec
Confidence 577888876544445667778888999999998653
No 258
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=25.31 E-value=3.4e+02 Score=28.85 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=50.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++|++++...-.......+.+++++.||++.++....++.. . ......+...++|.+++.....
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~vdgiii~~~~~ 66 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAGYGVLLGDTRSDPER-E--------------QEYLDLLRRKQADGIILLDGSL 66 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecCCCChHH-H--------------HHHHHHHHHcCCCEEEEecCCC
Confidence 678888887667777888899999999999987764432211 0 1112334556889888765433
Q ss_pred hHHHHHHHhCCCCCCCEEEE
Q 001646 227 KVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 227 ~~~la~La~~~~~gIPvI~t 246 (1038)
........ ..++|+|+.
T Consensus 67 ~~~~~~~~---~~~ipvv~~ 83 (267)
T cd06284 67 PPTALTAL---AKLPPIVQA 83 (267)
T ss_pred CHHHHHHH---hcCCCEEEE
Confidence 21211111 347898865
No 259
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=24.99 E-value=3.5e+02 Score=29.89 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=49.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC-cchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCC
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g-~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~ 224 (1038)
+|.+|++++...........+.+.+++.|+++.++..... ...... .....+...++|.|++...
T Consensus 1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~--------------~~i~~l~~~~vDgiIi~~~ 66 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQL--------------AQIEQCKSWGADAILLGTV 66 (295)
T ss_pred CeeEEecCCCcHHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH--------------HHHHHHHHcCCCEEEEecC
Confidence 4778888876556666677788888999999999765321 111110 1122334567998887653
Q ss_pred chhHHHHHHHhCCCCCCCEEEE
Q 001646 225 EAKVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 225 ~~~~~la~La~~~~~gIPvI~t 246 (1038)
........+... ..++|+|..
T Consensus 67 ~~~~~~~~l~~~-~~~iPvV~~ 87 (295)
T TIGR02955 67 SPEALNHDLAQL-TKSIPVFAL 87 (295)
T ss_pred ChhhhhHHHHHH-hcCCCEEEE
Confidence 322111112211 237898754
No 260
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=24.72 E-value=4.5e+02 Score=27.91 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=50.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++|.++........+...+.+.+.+.||++.++........ . ......+...++|.|++.....
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiii~~~~~ 66 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGYQLLLGNTGYSPER-E--------------EELLRTLLSRRPAGLILTGLEH 66 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCCEEEEecCCCCchh-H--------------HHHHHHHHHcCCCEEEEeCCCC
Confidence 678888877667777788889999999999988664322111 0 1112233446799888866443
Q ss_pred h-HHHHHHHhCCCCCCCEEEE
Q 001646 227 K-VVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 227 ~-~~la~La~~~~~gIPvI~t 246 (1038)
. ..+..+. ..++|+|..
T Consensus 67 ~~~~~~~~~---~~~ipvv~~ 84 (268)
T cd01575 67 TERTRQLLR---AAGIPVVEI 84 (268)
T ss_pred CHHHHHHHH---hcCCCEEEE
Confidence 2 2222222 346898864
No 261
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=24.55 E-value=94 Score=32.48 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=28.8
Q ss_pred HHHHHHh-cCEEEEccc----CCcCCcCHHHHHHHHcCCCEEEcC
Q 001646 417 VDSVLNT-ADVVIYGSF----LEEQTFPEILVKALCFRKPIIAPD 456 (1038)
Q Consensus 417 V~~lLaa-ADIfVlPS~----~EeqGFPlvLLEAMA~GkPVIaTd 456 (1038)
+...+.. +|++|+.-+ .++.||--.+.+|++.|+||++.=
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 3444444 899998752 244467778999999999999863
No 262
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.54 E-value=67 Score=35.51 Aligned_cols=55 Identities=25% Similarity=0.382 Sum_probs=43.4
Q ss_pred hhhhhcCCCCCCcccccccceeec-------hhhhHHHHHHHhHHHHHHHhhcHHHHHHHHH
Q 001646 955 MAEEADSDHPRRRWLWPSTGEVVW-------QGVFEKERHLRNKLKEKRKQQSKDKQTRQKR 1009 (1038)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1038)
.||..-|.++|.-++||.||+|.= ++|.|||+....+.+-++........++...
T Consensus 142 vaeDvGG~~gRkV~f~~~TG~v~Vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (233)
T PRK13489 142 TAEDLQGVHPRKVAFMPRTGRAMVKKLRLQVPGVAEREAALAREAHGERAARARARVELFAA 203 (233)
T ss_pred EEEeCCCCCCcEEEEECCCCEEEEEEcCCCCCchhHHHHHHHhhhhhhhhhhhhhHHHHhhC
Confidence 355668999999999999999954 6899999998888877777776666655543
No 263
>PRK13435 response regulator; Provisional
Probab=24.48 E-value=5.3e+02 Score=24.86 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=58.8
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHH--hcCEEEEcccCCcCCcCHHHHHHHHc--CCCE
Q 001646 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCF--RKPI 452 (1038)
Q Consensus 377 vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLa--aADIfVlPS~~EeqGFPlvLLEAMA~--GkPV 452 (1038)
.+++|+..... ....+....+..+.. .+......++....+. ..|++++-.......-+..+++-+.. .+|+
T Consensus 6 ~~iliid~~~~--~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~~~~~pi 81 (145)
T PRK13435 6 LKVLIVEDEAL--IALELEKLVEEAGHE--VVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSADGGVEV 81 (145)
T ss_pred ceEEEEcCcHH--HHHHHHHHHHhcCCe--EEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHhCCCCCE
Confidence 56666663221 123455555544432 1223344444544443 36888875422110124555555532 5777
Q ss_pred EEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 453 IAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 453 IaT-dvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
|.- ........+..|..+++..+-+.+.|.+.|..++..
T Consensus 82 i~ls~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (145)
T PRK13435 82 VFMTGNPERVPHDFAGALGVIAKPYSPRGVARALSYLSAR 121 (145)
T ss_pred EEEeCCHHHHHHHhcCcceeEeCCCCHHHHHHHHHHHHhc
Confidence 653 222222334457778999888889888888777653
No 264
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=24.07 E-value=3.7e+02 Score=30.67 Aligned_cols=86 Identities=10% Similarity=0.099 Sum_probs=54.8
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEc
Q 001646 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (1038)
Q Consensus 143 R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvh 222 (1038)
.+.+|+++.+++...--...+..+-.++.+.||++.++.....+ ... ......+...++|.|++.
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~-~~~--------------~~~i~~l~~~~vDGiIi~ 88 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNE-ETQ--------------MSQIENMINRGVDVLVII 88 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCH-HHH--------------HHHHHHHHHcCCCEEEEe
Confidence 57899999999877777788888889999999999987653221 100 011222334589999887
Q ss_pred CCchh---HHHHHHHhCCCCCCCEEEE
Q 001646 223 SLEAK---VVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 223 s~~~~---~~la~La~~~~~gIPvI~t 246 (1038)
..... ..+..+. ..++|+|..
T Consensus 89 ~~~~~~~~~~l~~~~---~~~iPvV~i 112 (330)
T PRK10355 89 PYNGQVLSNVIKEAK---QEGIKVLAY 112 (330)
T ss_pred CCChhhHHHHHHHHH---HCCCeEEEE
Confidence 54321 1222222 346887764
No 265
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=24.05 E-value=2.9e+02 Score=29.43 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=29.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEc
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSL 182 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~ 182 (1038)
|++|++++.-......+..+.+.+.+.|+.+.++..
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~ 37 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGYELTVLDA 37 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCceEEecCC
Confidence 677888877666777888899999999999987654
No 266
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.68 E-value=3.7e+02 Score=28.90 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=28.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcC
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLE 183 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~ 183 (1038)
+|++|.+++...-...+...+...+.+.|+++.++...
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 38 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKALGYDAVELSAE 38 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhcCCeEEEecCC
Confidence 57888888765555667777788888999999887543
No 267
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=23.48 E-value=74 Score=27.83 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=24.6
Q ss_pred HhHHHHhhhHHHHHhhhhhHHHHhhhhh------cCCCCHHHHHHHHhh
Q 001646 605 DIWKEEKDIEMLNVRKRREEEELKDRID------QSHGTWDEVYRSAKR 647 (1038)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 647 (1038)
.+|+.+..-+...+...--.+||+.|.+ -..-+||||.+.+|+
T Consensus 14 ~LwdSL~~~~~~~~~~~~~~~el~~R~~~~~~g~~~~i~~eev~~~ir~ 62 (63)
T TIGR02574 14 DIWDSIAAEAKHLILTEAQKAELDRRLADYKADPSKASPWEEVRARIRK 62 (63)
T ss_pred HHHHHhccCcccCCCCHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHc
Confidence 3455554322222223344566666663 334689999999886
No 268
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=23.40 E-value=8.2e+02 Score=30.00 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCCCceEEEccChhhHHHHHHhc--CEEEEcccCCcCCcCHHHHHHHHc---CCCEEE-cCCcccc---
Q 001646 391 SVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTA--DVVIYGSFLEEQTFPEILVKALCF---RKPIIA-PDLSNIR--- 461 (1038)
Q Consensus 391 ~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaA--DIfVlPS~~EeqGFPlvLLEAMA~---GkPVIa-TdvgGi~--- 461 (1038)
...++......|+ .|.......+....+... |++++--...+ .-|+.+++.+.. ++|||. |..|.+.
T Consensus 17 r~~l~~~L~~~G~---~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~-~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV 92 (464)
T COG2204 17 RELLEQALELAGY---EVVTAESAEEALEALSESPFDLVLLDIRMPG-MDGLELLKEIKSRDPDLPVIVMTGHGDIDTAV 92 (464)
T ss_pred HHHHHHHHHHcCC---eEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CchHHHHHHHHhhCCCCCEEEEeCCCCHHHHH
Confidence 3555555555553 366666666666666655 66666555543 568999988877 689876 6666654
Q ss_pred cccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 462 KYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 462 EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
+-+..|..-|+..|-+++.|...+.+.++.
T Consensus 93 ~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 93 EALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred HHHhcCcceeeeCCCCHHHHHHHHHHHHHH
Confidence 445678888999999999999999999987
No 269
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=23.28 E-value=5.4e+02 Score=27.25 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=49.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++|+++..---....+..+.+++.+.||++.++....++.. .. ..+. .+...++|.+++.....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~i~-~l~~~~~dgii~~~~~~ 66 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGYQMLLMNTNFSIEK-EI-------------EALE-LLARQKVDGIILLATTI 66 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-HH-------------HHHH-HHHhcCCCEEEEeCCCC
Confidence 677888766555567788888889999999988765432211 00 1112 23346889888765432
Q ss_pred h-HHHHHHHhCCCCCCCEEEEE
Q 001646 227 K-VVISNIMQEPFKSLPLVWTI 247 (1038)
Q Consensus 227 ~-~~la~La~~~~~gIPvI~ti 247 (1038)
. ..+..+. ..++|+|+.-
T Consensus 67 ~~~~~~~~~---~~~ipvv~~~ 85 (259)
T cd01542 67 TDEHREAIK---KLNVPVVVVG 85 (259)
T ss_pred CHHHHHHHh---cCCCCEEEEe
Confidence 1 2222222 3468988653
No 270
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.24 E-value=3.1e+02 Score=29.38 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=47.3
Q ss_pred EEEEcCCC-CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc
Q 001646 147 LALVFPDL-LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (1038)
Q Consensus 147 IaiV~~~L-~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~ 225 (1038)
|++|.|+. ...-...+...+...+.+.|+++.++....++ .... ..+..++ ..++|.|++....
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~~-------------~~~~~l~-~~~vdgiii~~~~ 66 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEEDGVEVIVLDANGDV-ARQA-------------AQVEDLI-AQKVDGIILWPTD 66 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCcCH-HHHH-------------HHHHHHH-HcCCCEEEEecCC
Confidence 57788876 55556667778888888999999887543211 1110 1112223 3479988776543
Q ss_pred hh---HHHHHHHhCCCCCCCEEEE
Q 001646 226 AK---VVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 226 ~~---~~la~La~~~~~gIPvI~t 246 (1038)
.. ..+..+ ...++|+|..
T Consensus 67 ~~~~~~~l~~~---~~~~iPvV~~ 87 (275)
T cd06317 67 GQAYIPGLRKA---KQAGIPVVIT 87 (275)
T ss_pred ccccHHHHHHH---HHCCCcEEEe
Confidence 31 122222 2457898743
No 271
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=22.97 E-value=4.1e+02 Score=28.85 Aligned_cols=85 Identities=9% Similarity=0.051 Sum_probs=49.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~ 225 (1038)
+|++|.+++...-....+..+.+.+++.||++.++... .+ .... ..+. .+...++|.|++....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~-~~~~-------------~~i~-~~~~~~~dgiii~~~~ 64 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGFTVVKIDVP-DG-EKVL-------------SAID-NLGAQGAKGFVICVPD 64 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHHcCCEEEEccCC-CH-HHHH-------------HHHH-HHHHcCCCEEEEccCc
Confidence 46788887765566677788889999999999877543 11 1110 1112 2334678988886543
Q ss_pred hhHHHHHHHhCCCCCCCEEEE
Q 001646 226 AKVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 226 ~~~~la~La~~~~~gIPvI~t 246 (1038)
....-..+......++|+|..
T Consensus 65 ~~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 65 VKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred hhhhHHHHHHHHhCCCeEEEe
Confidence 210111111112467898764
No 272
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.96 E-value=4.7e+02 Score=28.21 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=30.5
Q ss_pred eEEEEcCCC-CCChHHHHHHHHHHHHHHcCCeEEEEEcC
Q 001646 146 QLALVFPDL-LIDPQQLQMVTIAIALREIGYAIQVYSLE 183 (1038)
Q Consensus 146 rIaiV~~~L-~iGGae~~v~~LAkaL~k~G~eV~V~t~~ 183 (1038)
+|++|.++. ...-....+..+.+++.+.|+++.++...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~ 39 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPE 39 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 578888887 66667778888889999999999887654
No 273
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.66 E-value=3.7e+02 Score=30.12 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=50.6
Q ss_pred HHHHcCCCCceEE-EccCh-hhH-HHHHHhc--CEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCcccccccccCccEE
Q 001646 397 IAHNLHYPLGVVK-HMAAE-GDV-DSVLNTA--DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGY 471 (1038)
Q Consensus 397 La~qLgL~d~~V~-flG~~-edV-~~lLaaA--DIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvgGi~EiV~dG~nGl 471 (1038)
.+.++|++..++. ..|+- .+. ..+++.. |++|.=-.-..+|+.-++--|+.+|+|||.-+-+..+. + +-
T Consensus 166 ~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~----~--~~ 239 (256)
T TIGR00715 166 QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIP----G--VA 239 (256)
T ss_pred HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCC----C--Cc
Confidence 5677888764544 44433 233 4566655 45554322222367889999999999999977664321 1 11
Q ss_pred EEcCCCHHHHHHHHHHHH
Q 001646 472 LFPKENIKALTHIILQVI 489 (1038)
Q Consensus 472 Lv~~~D~eaLAeAI~~LL 489 (1038)
.+ .+++++.+.+.+++
T Consensus 240 ~~--~~~~el~~~l~~~~ 255 (256)
T TIGR00715 240 IF--DDISQLNQFVARLL 255 (256)
T ss_pred cC--CCHHHHHHHHHHhc
Confidence 12 46777777776643
No 274
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.59 E-value=4.4e+02 Score=29.67 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=31.7
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 001646 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (1038)
Q Consensus 142 ~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~ 184 (1038)
..++++..+++ ....|=+..+..+|..|.+.|+.|.+++...
T Consensus 69 ~~~~~vi~l~G-~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 69 ENKPNVILFVG-VNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCCeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 35567777764 4445666788999999999999999998653
No 275
>PRK10494 hypothetical protein; Provisional
Probab=22.46 E-value=2.7e+02 Score=31.22 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=64.5
Q ss_pred HHHHHHHHHchhhcccCCCCCCCEEEEEEeCCC---CCchHHHHHHHHHHcCCCCceEEEccCh----h---hHHHHHHh
Q 001646 354 ALILRALLPLFSEVSVENESNSPIKVMILSGDS---TSNYSVVIEAIAHNLHYPLGVVKHMAAE----G---DVDSVLNT 423 (1038)
Q Consensus 354 dlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~---~e~Y~~~LeeLa~qLgL~d~~V~flG~~----e---dV~~lLaa 423 (1038)
+.+.+|+...+ +++. .++++.||.. ...-.+..++.+.++|++.+.|...+.. + ...+++..
T Consensus 107 ~Rl~~a~~L~r-~~~~-------~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~ 178 (259)
T PRK10494 107 PRLTEGIRLWR-ANPG-------AKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGD 178 (259)
T ss_pred HHHHHHHHHHH-hCCC-------CEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCC
Confidence 45666666544 4555 7899999542 1233466678888999998667665522 2 23445655
Q ss_pred cCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc
Q 001646 424 ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (1038)
Q Consensus 424 ADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg 458 (1038)
..+++.+|-+- ++-+...+-..|+.||..+++
T Consensus 179 ~~iiLVTsa~H---m~RA~~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 179 APFLLVTSASH---LPRAMIFFQQEGLNPLPAPAN 210 (259)
T ss_pred CCEEEECCHHH---HHHHHHHHHHcCCceeecCCc
Confidence 56999999775 788999999999999976654
No 276
>PF08465 Herpes_TK_C: Thymidine kinase from Herpesvirus C-terminal; InterPro: IPR013672 This domain is found towards the C terminus in Herpesvirus Thymidine kinases. ; GO: 0004797 thymidine kinase activity, 0005524 ATP binding
Probab=22.43 E-value=56 Score=25.35 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=18.3
Q ss_pred hcCCCCHHHHHHHHhhhhhccc
Q 001646 632 DQSHGTWDEVYRSAKRADRAKN 653 (1038)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (1038)
+--.|-|.+||.++.|....|.
T Consensus 4 dDvpGlW~~IY~qi~kn~aIKt 25 (33)
T PF08465_consen 4 DDVPGLWTEIYTQILKNPAIKT 25 (33)
T ss_pred CccccHHHHHHHHHHhCccccc
Confidence 3457999999999999887774
No 277
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.31 E-value=3.8e+02 Score=28.69 Aligned_cols=85 Identities=8% Similarity=0.046 Sum_probs=48.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++++++....-....+..+.+.+.+.||++.+....... .... ..+..+ ...++|.|++.....
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~-~~~~-------------~~~~~~-~~~~vdgiii~~~~~ 66 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKVNLIVSIANQDL-NKQL-------------SDVEDF-ITKKVDAIVLSPVDS 66 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHhcCCEEEEecCCCCH-HHHH-------------HHHHHH-HHcCCCEEEEcCCCh
Confidence 5677787766566677788888899999999886543211 1000 111222 345799988865433
Q ss_pred hHHHHHHHhCCCCCCCEEEE
Q 001646 227 KVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 227 ~~~la~La~~~~~gIPvI~t 246 (1038)
......+......++|+|..
T Consensus 67 ~~~~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 67 KGIRAAIAKAKKAGIPVITV 86 (267)
T ss_pred hhhHHHHHHHHHCCCCEEEE
Confidence 11111111112356887764
No 278
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.09 E-value=4.8e+02 Score=27.85 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=48.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++++|+....-.......+.+.+.+.||.+.++.....+.. .. ..+..+ ...++|.|++.....
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~~~~l-~~~~vdgiii~~~~~ 66 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGYTLLVASSGYDLDR-EY-------------AQARKL-LERGVDGLALIGLDH 66 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEecCCCCHHH-HH-------------HHHHHH-HhcCCCEEEEeCCCC
Confidence 678888776655677788899999999999988653322111 00 111223 334788888754432
Q ss_pred hHHHHHHHhCCCCCCCEEEE
Q 001646 227 KVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 227 ~~~la~La~~~~~gIPvI~t 246 (1038)
.......+ ...++|+|+.
T Consensus 67 ~~~~~~~l--~~~~iPvv~~ 84 (268)
T cd06273 67 SPALLDLL--ARRGVPYVAT 84 (268)
T ss_pred CHHHHHHH--HhCCCCEEEE
Confidence 11222222 2356898764
No 279
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=22.01 E-value=3.9e+02 Score=29.41 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCC---CChHHHHHHHHHHHHHHcCCeEEEEEcCCCc
Q 001646 143 RKPQLALVFPDLL---IDPQQLQMVTIAIALREIGYAIQVYSLEDGR 186 (1038)
Q Consensus 143 R~prIaiV~~~L~---iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~ 186 (1038)
.+.++++|.++.. +|.+. .+..+.++|++|.++|...|+
T Consensus 9 ~~~~vL~v~aHPDDe~~g~gg-----tla~~~~~G~~V~v~~lT~Ge 50 (237)
T COG2120 9 DPLRVLVVFAHPDDEEIGCGG-----TLAKLAARGVEVTVVCLTLGE 50 (237)
T ss_pred cCCcEEEEecCCcchhhccHH-----HHHHHHHCCCeEEEEEccCCc
Confidence 4567788887642 33222 234457899999999998765
No 280
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=21.99 E-value=1.1e+03 Score=27.70 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=68.1
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCceEEEccC--hhhHHHHHHhcCEEE
Q 001646 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAA--EGDVDSVLNTADVVI 428 (1038)
Q Consensus 351 KgldlLLeAl~~L~~k~p~~~~~~~~vkLVIVGG~~~e~Y~~~LeeLa~qLgL~d~~V~flG~--~edV~~lLaaADIfV 428 (1038)
.|++.+++|+......... .....+-.+.|+|+.........++++.+.+|+.- +..+.|. .+++.. +..|.+-|
T Consensus 136 ~G~~~a~~al~~~l~~~~~-~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~-~~~~~~~~~~~~i~~-~~~A~~ni 212 (406)
T cd01967 136 LGHHIANDAILDHLVGTKE-PEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRV-NATFTGDGTVDELRR-AHRAKLNL 212 (406)
T ss_pred HHHHHHHHHHHHHhcCCCC-cCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEE-EEEeCCCCCHHHHhh-CccCCEEE
Confidence 5787788887654322110 00112346778884321223478999999999987 6666643 266665 45555544
Q ss_pred EcccCCcCCcCHHHHHHHH--cCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 001646 429 YGSFLEEQTFPEILVKALC--FRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (1038)
Q Consensus 429 lPS~~EeqGFPlvLLEAMA--~GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsD 491 (1038)
..+.. ++..+.+.|. +|+|.+.... +...+.+++.+.|.+++..
T Consensus 213 v~~~~----~~~~~a~~L~~r~GiP~~~~~p---------------~G~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 213 VHCSR----SMNYLAREMEERYGIPYMEVNF---------------YGFEDTSESLRKIAKFFGD 258 (406)
T ss_pred EEChH----HHHHHHHHHHHhhCCCEEEecC---------------CcHHHHHHHHHHHHHHhCC
Confidence 43321 3455555553 7899875221 1123567777777777755
No 281
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.92 E-value=4.7e+02 Score=27.95 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=50.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++|+|++.-.-....+..+.+.+.+.||.+.++...... ... ......+...++|.|++.....
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~i~~l~~~~~dgiii~~~~~ 66 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAERGYSTFVANTGDNP-DAQ--------------RRAIEMLLDRRVDGLILGDARS 66 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCH-HHH--------------HHHHHHHHHcCCCEEEEecCCC
Confidence 6788888776667778889999999999998765543211 111 1112234456789888765432
Q ss_pred hHHHHHHHhCCCCCCCEEEEEe
Q 001646 227 KVVISNIMQEPFKSLPLVWTIH 248 (1038)
Q Consensus 227 ~~~la~La~~~~~gIPvI~tiH 248 (1038)
.......+ ...++|+|+.-.
T Consensus 67 ~~~~~~~~--~~~~iPvv~~~~ 86 (265)
T cd06285 67 DDHFLDEL--TRRGVPFVLVLR 86 (265)
T ss_pred ChHHHHHH--HHcCCCEEEEcc
Confidence 21221222 234689875543
No 282
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=21.70 E-value=3.9e+02 Score=28.18 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=49.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCc
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~ 225 (1038)
+|++|.++............+..++.+.|+++.++.....+.. . ...+..++.+ ++|.|++....
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~-~-------------~~~~~~l~~~-~vdgvi~~~~~ 65 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGVELIVLDAQNDVSK-Q-------------IQQIEDLIAQ-GVDGIIISPVD 65 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCceEEEECCCCCHHH-H-------------HHHHHHHHHc-CCCEEEEeCCC
Confidence 4788888765555566777777888889999988766432211 0 0112233333 78988876543
Q ss_pred hhHH--HHHHHhCCCCCCCEEEEEe
Q 001646 226 AKVV--ISNIMQEPFKSLPLVWTIH 248 (1038)
Q Consensus 226 ~~~~--la~La~~~~~gIPvI~tiH 248 (1038)
.... ....+ ...++|+|..-.
T Consensus 66 ~~~~~~~~~~l--~~~~ip~V~~~~ 88 (267)
T cd01536 66 SAALTPALKKA--NAAGIPVVTVDS 88 (267)
T ss_pred chhHHHHHHHH--HHCCCcEEEecC
Confidence 2111 11222 135688876543
No 283
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=21.67 E-value=5.4e+02 Score=27.36 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=48.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++|+++....-...+...+.+++.+.|+++.++....++.. .......+...++|.|++.....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~l~~~~vdgiIi~~~~~ 66 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGYSTIIGNSDENPET---------------ENRYLDNLLSQRVDGIIVVPHEQ 66 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCCEEEEEeCCCCHHH---------------HHHHHHHHHhcCCCEEEEcCCCC
Confidence 677777765444556677788888999999998865322110 01112334456899888865432
Q ss_pred hH-HHHHHHhCCCCCCCEEEEE
Q 001646 227 KV-VISNIMQEPFKSLPLVWTI 247 (1038)
Q Consensus 227 ~~-~la~La~~~~~gIPvI~ti 247 (1038)
.. .+..+. ..++|+|+.-
T Consensus 67 ~~~~~~~l~---~~~ipvV~~~ 85 (265)
T cd06299 67 SAEQLEDLL---KRGIPVVFVD 85 (265)
T ss_pred ChHHHHHHH---hCCCCEEEEe
Confidence 11 222222 3578987643
No 284
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=21.65 E-value=5.5e+02 Score=27.90 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=49.8
Q ss_pred eEEEEcCC---CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEc
Q 001646 146 QLALVFPD---LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (1038)
Q Consensus 146 rIaiV~~~---L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvh 222 (1038)
+|++|+|+ +...-...++..+.+.+++.||++.++...+ + ... ......+...++|.|++.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~~~i~~~~~-~-~~~--------------~~~i~~l~~~~vdgiI~~ 64 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYKYVESKS-D-ADY--------------EPNLEQLADAGYDLIVGV 64 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCeEEEEecCC-H-HHH--------------HHHHHHHHhCCCCEEEEc
Confidence 47788876 4555566778888899999999999975431 1 100 011223445789999987
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEE
Q 001646 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 223 s~~~~~~la~La~~~~~gIPvI~t 246 (1038)
+............ ...++|+|..
T Consensus 65 ~~~~~~~~~~~~~-~~~~~PiV~i 87 (265)
T cd06354 65 GFLLADALKEVAK-QYPDQKFAII 87 (265)
T ss_pred CcchHHHHHHHHH-HCCCCEEEEE
Confidence 5432222222221 2346787754
No 285
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=21.65 E-value=1.2e+03 Score=27.87 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCCCceEEEccCh--hhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHcCCCEEEcCCc----ccccccc
Q 001646 392 VVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVD 465 (1038)
Q Consensus 392 ~~LeeLa~qLgL~d~~V~flG~~--edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~GkPVIaTdvg----Gi~EiV~ 465 (1038)
.-.+.++....-.+ +|.+.--. +++...++++|++|-.-++ .++=||+.|+|+|+-... ++.+.+
T Consensus 253 ~va~~ia~~~~~~~-~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-------saI~al~~g~p~i~i~Y~~K~~~l~~~~- 323 (385)
T COG2327 253 AVADAIAQLVLDSA-EILVSSDEYAEELGGILAACDLIVGMRLH-------SAIMALAFGVPAIAIAYDPKVRGLMQDL- 323 (385)
T ss_pred HHHHHHHhhcCCcc-ceEeecchHHHHHHHHhccCceEEeehhH-------HHHHHHhcCCCeEEEeecHHHHHHHHHc-
Confidence 34445555443333 56655422 4667789999998765543 567799999999986544 222222
Q ss_pred cCccEEEE--cCCCHHHHHHHHHHHHHc
Q 001646 466 DRVNGYLF--PKENIKALTHIILQVITN 491 (1038)
Q Consensus 466 dG~nGlLv--~~~D~eaLAeAI~~LLsD 491 (1038)
|..++.. .+.+.+.+.++..+.+.+
T Consensus 324 -gl~~~~~~i~~~~~~~l~~~~~e~~~~ 350 (385)
T COG2327 324 -GLPGFAIDIDPLDAEILSAVVLERLTK 350 (385)
T ss_pred -CCCcccccCCCCchHHHHHHHHHHHhc
Confidence 2223333 345678888888777765
No 286
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=21.51 E-value=6.6e+02 Score=27.92 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=51.0
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEc
Q 001646 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (1038)
Q Consensus 143 R~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvh 222 (1038)
+...|++|++.+...-...++..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdGiI~~ 119 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQR-M--------------NRNLETLMQKRVDGLLLL 119 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHH-H--------------HHHHHHHHHcCCCEEEEe
Confidence 3457889998876555666778888999999999988654322111 0 011122334678988876
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEE
Q 001646 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 223 s~~~~~~la~La~~~~~gIPvI~t 246 (1038)
...........+. ...++|+|..
T Consensus 120 ~~~~~~~~~~~l~-~~~~iPvV~i 142 (327)
T PRK10423 120 CTETHQPSREIMQ-RYPSVPTVMM 142 (327)
T ss_pred CCCcchhhHHHHH-hcCCCCEEEE
Confidence 5432111222221 2346897754
No 287
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=21.47 E-value=3.9e+02 Score=30.39 Aligned_cols=103 Identities=8% Similarity=0.140 Sum_probs=59.8
Q ss_pred CCCCceEEEEcCCCCCChHHHHHHHHHHHHHHc--CCeEEEEEcCCCcchhhhhhcCceEEEcccc--------hhHHHH
Q 001646 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKASF 210 (1038)
Q Consensus 141 ~~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~--G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~--------rkl~~l 210 (1038)
+-+++||+++.++-+ . -+..+..+.+.- ..+|.++...........+..|+++..++.. ..+...
T Consensus 81 ~~~~~ki~vl~Sg~g---~--nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~ 155 (280)
T TIGR00655 81 ADKLKRVAILVSKED---H--CLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQLEL 155 (280)
T ss_pred CCCCcEEEEEEcCCC---h--hHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHH
Confidence 446789988776532 2 233444554432 3466666655555555677889998776642 234455
Q ss_pred hhhcCCcEEEEcCCchhHHHHHHHhCCCCCCCEEEEEeCchh
Q 001646 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL 252 (1038)
Q Consensus 211 I~~~kpDIVhvhs~~~~~~la~La~~~~~gIPvI~tiHg~~L 252 (1038)
++..++|+|++....-. +-..+... +.+ -++.+|...+
T Consensus 156 l~~~~~Dlivlagym~i-l~~~~l~~-~~~--~iINiHpSLL 193 (280)
T TIGR00655 156 LKQYQVDLVVLAKYMQI-LSPDFVKR-YPN--KIINIHHSFL 193 (280)
T ss_pred HHHhCCCEEEEeCchhh-CCHHHHhh-ccC--CEEEecCCcC
Confidence 77789999998876541 22223322 221 2678886433
No 288
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=21.43 E-value=3.6e+02 Score=28.99 Aligned_cols=83 Identities=10% Similarity=0.035 Sum_probs=47.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCC
Q 001646 146 QLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (1038)
Q Consensus 146 rIaiV~~~L~iGGae~~v~~LAkaL~k~-G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~ 224 (1038)
+|+++++++...-...++..+.+.+.+. |+++.++...... ....+ .+.. +...++|.|++...
T Consensus 1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~-------------~i~~-~~~~~vdgiii~~~ 65 (270)
T cd06308 1 VIGFSQCNLADPWRAAMNDEIQREASNYPDVELIIADAADDN-SKQVA-------------DIEN-FIRQGVDLLIISPN 65 (270)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCH-HHHHH-------------HHHH-HHHhCCCEEEEecC
Confidence 3677888776555667777888888886 9999887543221 11111 1122 22357898887654
Q ss_pred chh---HHHHHHHhCCCCCCCEEEE
Q 001646 225 EAK---VVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 225 ~~~---~~la~La~~~~~gIPvI~t 246 (1038)
... ..+..+ ...++|+|..
T Consensus 66 ~~~~~~~~~~~~---~~~~ipvV~~ 87 (270)
T cd06308 66 EAAPLTPVVEEA---YRAGIPVILL 87 (270)
T ss_pred chhhchHHHHHH---HHCCCCEEEe
Confidence 321 122222 2357898754
No 289
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=21.34 E-value=1.6e+02 Score=28.44 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=47.3
Q ss_pred EEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHH--hcCEEEEcccCCcCCcCHHHHHHH--HcCCCEE
Q 001646 379 VMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKAL--CFRKPII 453 (1038)
Q Consensus 379 LVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLa--aADIfVlPS~~EeqGFPlvLLEAM--A~GkPVI 453 (1038)
|+++| |-...-..+.+++.+++.|++- .|...+. .++..... .+|+++++.... |=..=++.. ..|+||.
T Consensus 5 LlvCg~G~STSlla~k~k~~~~e~gi~~-~i~a~~~-~e~~~~~~~~~~DvIll~PQi~---~~~~~i~~~~~~~~ipv~ 79 (104)
T PRK09590 5 LIICAAGMSSSMMAKKTTEYLKEQGKDI-EVDAITA-TEGEKAIAAAEYDLYLVSPQTK---MYFKQFEEAGAKVGKPVV 79 (104)
T ss_pred EEECCCchHHHHHHHHHHHHHHHCCCce-EEEEecH-HHHHHhhccCCCCEEEEChHHH---HHHHHHHHHhhhcCCCEE
Confidence 45556 7765556678889999989875 4554443 46666654 589999987432 333334444 4789998
Q ss_pred EcC
Q 001646 454 APD 456 (1038)
Q Consensus 454 aTd 456 (1038)
+-+
T Consensus 80 ~I~ 82 (104)
T PRK09590 80 QIP 82 (104)
T ss_pred EeC
Confidence 754
No 290
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.17 E-value=5.9e+02 Score=27.18 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=50.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|+++.+++...-....+..+...+++.||++.++...... ... ......+...++|.|++.....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~-~~~--------------~~~i~~l~~~~~dgiii~~~~~ 66 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAGYDVVLSESGRRT-SPE--------------RQWVERLSARRTDGVILVTPEL 66 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecCCCch-HHH--------------HHHHHHHHHcCCCEEEEecCCC
Confidence 6778887766566777788888899999999887654322 100 0112223446789887654432
Q ss_pred hHHHHHHHhCCCCCCCEEEEE
Q 001646 227 KVVISNIMQEPFKSLPLVWTI 247 (1038)
Q Consensus 227 ~~~la~La~~~~~gIPvI~ti 247 (1038)
.......+ ...++|+|..-
T Consensus 67 ~~~~~~~~--~~~~ipvV~i~ 85 (270)
T cd06296 67 TSAQRAAL--RRTGIPFVVVD 85 (270)
T ss_pred ChHHHHHH--hcCCCCEEEEe
Confidence 21222222 24578988653
No 291
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.07 E-value=4.2e+02 Score=28.45 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=50.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++|++++...-.......+.+.+++.||++.+......+.. . ......+...++|.|++.....
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~vdgii~~~~~~ 66 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYSLLIANSLNDPER-E--------------LEILRSFEQRRMDGIIIAPGDE 66 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCEEEEEeCCCChHH-H--------------HHHHHHHHHcCCCEEEEecCCC
Confidence 678888877666777888888999999999988765332210 0 1112233445789888754321
Q ss_pred h-HHHHHHHhCCCCCCCEEEEEe
Q 001646 227 K-VVISNIMQEPFKSLPLVWTIH 248 (1038)
Q Consensus 227 ~-~~la~La~~~~~gIPvI~tiH 248 (1038)
. ..+...+ ...++|+|+.-.
T Consensus 67 ~~~~~~~~~--~~~~ipvV~i~~ 87 (269)
T cd06281 67 RDPELVDAL--ASLDLPIVLLDR 87 (269)
T ss_pred CcHHHHHHH--HhCCCCEEEEec
Confidence 1 1122222 134689876543
No 292
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=20.65 E-value=3.9e+02 Score=30.53 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=27.1
Q ss_pred hHHHHHH--hcCEEEEcccCCcCCcCHHHHHHHH--cCCCEEE
Q 001646 416 DVDSVLN--TADVVIYGSFLEEQTFPEILVKALC--FRKPIIA 454 (1038)
Q Consensus 416 dV~~lLa--aADIfVlPS~~EeqGFPlvLLEAMA--~GkPVIa 454 (1038)
++.+.+. .+|++|=.|...+ -|.--++++|+ +..|||-
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~~g-~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGVGG-AFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCCCC-CCCHHHHHHHHhcCCCCEEE
Confidence 3555566 7789988885432 58888999998 4677775
No 293
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=20.58 E-value=5.8e+02 Score=27.15 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=48.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++|++++...-...+...+.+.+++.|+++.++....++.. .. ..+.. +...++|.|++.....
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~i~~-l~~~~vdgiii~~~~~ 66 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKYNIILSNSDNDKEK-EL-------------KVLNN-LLAKQVDGIIFMGGKI 66 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHH-HH-------------HHHHH-HHHhcCCEEEEeCCCC
Confidence 677888776555566667777888999999988864332211 00 11122 2346789888754322
Q ss_pred -hHHHHHHHhCCCCCCCEEEEEe
Q 001646 227 -KVVISNIMQEPFKSLPLVWTIH 248 (1038)
Q Consensus 227 -~~~la~La~~~~~gIPvI~tiH 248 (1038)
...+..+. ..++|+|+.-+
T Consensus 67 ~~~~~~~l~---~~~ipvV~~~~ 86 (268)
T cd06298 67 SEEHREEFK---RSPTPVVLAGS 86 (268)
T ss_pred cHHHHHHHh---cCCCCEEEEcc
Confidence 12222222 34789876543
No 294
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.45 E-value=5.3e+02 Score=27.63 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcC
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLE 183 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~ 183 (1038)
|++|++++...-...++..+.+.+.+.||++.++...
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGYTVLLCNTY 38 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6788888776667778888999999999999776543
No 295
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=20.31 E-value=5.1e+02 Score=27.68 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=49.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|+++++++...-...+...+.+.+++.||++.+.+...++.. . ......+...++|.|++.....
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~vdgiii~~~~~ 66 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGYQLLIACSDDDPET-E--------------RETVETLIARQVDALIVAGSLP 66 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHHcCCCEEEEcCCCC
Confidence 567788766555566677788889999999998865432211 0 1112233446889888765432
Q ss_pred hHHHHHHHhCCCCCCCEEEEEe
Q 001646 227 KVVISNIMQEPFKSLPLVWTIH 248 (1038)
Q Consensus 227 ~~~la~La~~~~~gIPvI~tiH 248 (1038)
.......+ ...++|+|..-.
T Consensus 67 ~~~~~~~~--~~~~ipvV~~~~ 86 (264)
T cd06274 67 PDDPYYLC--QKAGLPVVALDR 86 (264)
T ss_pred chHHHHHH--HhcCCCEEEecC
Confidence 22221112 245689776543
No 296
>PRK10867 signal recognition particle protein; Provisional
Probab=20.09 E-value=3.8e+02 Score=32.47 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=32.0
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCC
Q 001646 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLED 184 (1038)
Q Consensus 142 ~R~prIaiV~~~L~iGGae~~v~~LAkaL~k~-G~eV~V~t~~~ 184 (1038)
..+|.+.++++ +...|=+..+..+|..|.+. |+.|.+++...
T Consensus 97 ~~~p~vI~~vG-~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 97 AKPPTVIMMVG-LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CCCCEEEEEEC-CCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 34577777665 45556677889999999998 99999998754
No 297
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.04 E-value=5.4e+02 Score=27.49 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=49.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcCCch
Q 001646 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (1038)
Q Consensus 147 IaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs~~~ 226 (1038)
|++|+|++...-...++..+.+.+++.||++.++.....+.. . ......+...++|.|++.....
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~~dgiii~~~~~ 66 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAGLRVILCNTDEDPEK-E--------------AMYLELMEEERVTGVIFAPTRA 66 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHhCCCCEEEEeCCCC
Confidence 678888876555667778888999999999987765432211 0 0112234456789888765432
Q ss_pred hHHHHHHHhCCCCCCCEEEE
Q 001646 227 KVVISNIMQEPFKSLPLVWT 246 (1038)
Q Consensus 227 ~~~la~La~~~~~gIPvI~t 246 (1038)
......+ ...++|+|..
T Consensus 67 ~~~~~~~---~~~~iPvV~~ 83 (263)
T cd06280 67 TLRRLAE---LRLSFPVVLI 83 (263)
T ss_pred CchHHHH---HhcCCCEEEE
Confidence 1121111 2346887754
No 298
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=20.02 E-value=5.8e+02 Score=27.50 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=47.8
Q ss_pred eEEEEcCC--CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCceEEEcccchhHHHHhhhcCCcEEEEcC
Q 001646 146 QLALVFPD--LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (1038)
Q Consensus 146 rIaiV~~~--L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~g~~~~~~e~~gI~v~~l~~~rkl~~lI~~~kpDIVhvhs 223 (1038)
||++|++. +...-...++..+.+.+++.||++.++... ++.. . ......+...++|.|++..
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~-~~~~-~--------------~~~~~~l~~~~vdgiii~~ 64 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVEVKYVESV-EDAD-Y--------------EPNLRQLAAQGYDLIFGVG 64 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCceEEEEecC-CHHH-H--------------HHHHHHHHHcCCCEEEECC
Confidence 57888885 444455666777788889999999887543 2211 0 0112223445789887765
Q ss_pred CchhHHHHHHHhCCCCCCCEEEEE
Q 001646 224 LEAKVVISNIMQEPFKSLPLVWTI 247 (1038)
Q Consensus 224 ~~~~~~la~La~~~~~gIPvI~ti 247 (1038)
......+..++. ...++|+|..-
T Consensus 65 ~~~~~~~~~~~~-~~~~ipvv~~~ 87 (260)
T cd06304 65 FGFMDAVEKVAK-EYPDVKFAIID 87 (260)
T ss_pred cchhHHHHHHHH-HCCCCEEEEec
Confidence 432122222222 13367876543
Done!