BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001648
(1038 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FQ3|A Chain A, Structure And Function Of The Swirm Domain, A Conserved
Protein Module Found In Chromatin Regulatory Complexes
Length = 104
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 153 THCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLS 212
++ WF+ KIH +E Q+LP FF + +TP++YM RN+++ + NP +
Sbjct: 15 SYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTAR 74
Query: 213 ELEVGSLDARQEVMEFLDYWGLINFH 238
G A + +FL WGLIN+
Sbjct: 75 RNVSGDAAALFRLHKFLTKWGLINYQ 100
>pdb|2YUS|A Chain A, Solution Structure Of The Sant Domain Of Human SwiSNF-
Related Matrix-Associated Actin-Dependent Regulator Of
Chromatin Subfamily C Member 1
Length = 79
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 12/80 (15%)
Query: 370 EAAGVSGGK-WTDQXXXXXXXXXXXYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLD 428
++ G S G+ WT+Q YK++WN+++EHV ++T+ +CILHF+++PIED +L
Sbjct: 11 KSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL- 69
Query: 429 CDDDVDGNLKETTDDAPTNG 448
E +D P++G
Sbjct: 70 ----------ENSDSGPSSG 79
>pdb|2DCE|A Chain A, Solution Structure Of The Swirm Domain Of Human Kiaa1915
Protein
Length = 111
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 163 IHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKF 198
I E+QA+P FF G+ Q +TP+ Y++IRN+I+ ++
Sbjct: 27 IQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQW 61
>pdb|1TOT|A Chain A, Zz Domain Of Cbp- A Novel Fold For A Protein Interaction
Module
Length = 52
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 320 YHCNSCSADCSRKRYHCQKQADFDLCTDCFN 350
Y CN C R+HC D+DLC +C+N
Sbjct: 7 YTCNECKHHV-ETRWHCTVCEDYDLCINCYN 36
>pdb|2E5R|A Chain A, Solution Structure Of The Zz Domain Of Dystrobrevin Alpha
(Dystrobrevin-Alpha)
Length = 63
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 322 CNSCSADCSRK-RYHCQKQADFDLCTDCFNNGKFGSDMSS 360
C+ C ++ RY CQ+ ++ LC DCF G G S+
Sbjct: 14 CSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSN 53
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 164 HPLEEQALPAFFN-GKSQDRTPDIYMEIRNWIMKKF 198
H ++ QA+ A+ ++ +P++Y E+RNW+ K+
Sbjct: 552 HAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEI 587
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 164 HPLEEQALPAFFN-GKSQDRTPDIYMEIRNWIMKKF 198
H ++ QA+ A+ ++ +P++Y E+RNW+ K+
Sbjct: 552 HAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 164 HPLEEQALPAFFN-GKSQDRTPDIYMEIRNWIMKKF 198
H ++ QA+ A+ ++ +P++Y E+RNW+ K+
Sbjct: 552 HAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 164 HPLEEQALPAFFN-GKSQDRTPDIYMEIRNWIMKKF 198
H ++ QA+ A+ ++ +P++Y E+RNW+ K+
Sbjct: 552 HAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 164 HPLEEQALPAFFN-GKSQDRTPDIYMEIRNWIMKKF 198
H ++ QA+ A+ ++ +P++Y E+RNW+ K+
Sbjct: 552 HAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 164 HPLEEQALPAFFN-GKSQDRTPDIYMEIRNWIMKKF 198
H ++ QA+ A+ ++ +P++Y E+RNW+ K+
Sbjct: 552 HAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.126 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,881,457
Number of Sequences: 62578
Number of extensions: 1036958
Number of successful extensions: 1593
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1586
Number of HSP's gapped (non-prelim): 17
length of query: 1038
length of database: 14,973,337
effective HSP length: 109
effective length of query: 929
effective length of database: 8,152,335
effective search space: 7573519215
effective search space used: 7573519215
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)