BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001648
(1038 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1
SV=3
Length = 985
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/1060 (49%), Positives = 655/1060 (61%), Gaps = 100/1060 (9%)
Query: 1 MEEKRREAGAQPAATSSAAAGAESAASEPASS-RRRAGAHKRKASALSATNA-SSTPSKR 58
MEEKRR++ A A + +S ASEP + RRR G KRKA+AL +N SS PSKR
Sbjct: 1 MEEKRRDSAGTLAF---AGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKR 57
Query: 59 M-TREKNLVA-HTPIYNHNGPLTRARQGPTTLAAAA------AFGGAPGSAGGKLEAARD 110
M TREK ++A +P+ HNGPLTRARQ P+ + +AA A G+ G K +
Sbjct: 58 MLTREKAMLASFSPV--HNGPLTRARQAPSIMPSAADGVKSEVLNVAVGADGEKPKEE-- 113
Query: 111 DSTFEAIEELNKASEEWAALEAKIEADFEAIRSRDSNVHVVPTHCGWFSWTKIHPLEEQA 170
EE NKA EW ALEAKIEADFEAIRSRDSNVHVVP HCGWFSW KIHPLEE++
Sbjct: 114 -------EERNKAIREWEALEAKIEADFEAIRSRDSNVHVVPNHCGWFSWEKIHPLEERS 166
Query: 171 LPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLD 230
LP+FFNGK + RT ++Y EIRNWIM KFHSNP QIELKDL+ELEVG +A+QEVMEFLD
Sbjct: 167 LPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKDLTELEVGDSEAKQEVMEFLD 226
Query: 231 YWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKKGSLLEKLYRFEEIKAGPPVAPMPS 290
YWGLINFHPFP ++ SD D + D K SLL LYRF+ +A PP+ P
Sbjct: 227 YWGLINFHPFPPTDTGSTASDHDDLGD--------KESLLNSLYRFQVDEACPPLVHKPR 278
Query: 291 ITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFN 350
T A PSGLFP+ A+EL K EGPAVEYHCNSCSADCSRKRYHC KQADFDLCT+CFN
Sbjct: 279 FTAQATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFN 338
Query: 351 NGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTK 410
+GKF SDMSSSDFILM P EA GV GKWTDQETLLLLEALE++KENWNEIAEHVATKTK
Sbjct: 339 SGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTK 398
Query: 411 AQCILHFVQMPIEDMFLDCDDDVDGNLKETTDDAPTNGDTSASKDVAEASESKTGAVEGQ 470
AQC+LHF+QMPIED FLD D D K+TTD A + D S KD E +E+K E +
Sbjct: 399 AQCMLHFLQMPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSVLKDAPEEAENKKRVDEDE 458
Query: 471 TQTSPMETSKPEDASELKICEDTSKPKDES----DVKVDEQMLKSEDTSEGKVGQETGEN 526
T E +PED +E K+ +++SKP D S +++ +++ K E E + E EN
Sbjct: 459 TMK---EVPEPEDGNEEKVSQESSKPGDASEETNEMEAEQKTPKLETAIEERCKDEADEN 515
Query: 527 IALKALREAFEAVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGPDLTTASARSSLKSIS 586
IALKAL EAFE VG+ T E SFA++GNPVM LAAFL L G D+ TASAR+S+KS+
Sbjct: 516 IALKALTEAFEDVGHSSTPEASFSFADLGNPVMGLAAFLVRLAGSDVATASARASIKSLH 575
Query: 587 GNSPAMQLAAKHCFILEDPPGDKKEVAHSESIV--AEMADRDIQKDETLEDINVKECNSA 644
NS M LA +HC+ILEDPP +KK+ S+S AE D + KD+ E+ + K +
Sbjct: 576 SNS-GMLLATRHCYILEDPPDNKKDPTKSKSCSADAEGNDDNSHKDDQPEEKSKKAEEVS 634
Query: 645 SVLDERDLSNDHGDKKIEDSVPEEKRHAASLNEKPSEKLNG-----ATGPANQDTPEKDE 699
D+R++ + K+ +DSV EEK+ S E + KL+ ++ P D EK
Sbjct: 635 LNSDDREMPDTDTGKETQDSVSEEKQ-PGSRTENSTTKLDAVQEKRSSKPVTTDNSEK-- 691
Query: 700 PGDLNELSNPKSPKDNQPSIVEESNDLPSKVLQSSQKESGEGS--SGEPAPPVDVEKDNS 757
P D+ S K +++ N L S+ +SQ + + + +P DVE
Sbjct: 692 PVDIICPSQDKCSGKELQEPLKDGNKLSSENKDASQSTVSQSAADASQPEASRDVE---- 747
Query: 758 LLSDSLPSGKNEPDQRVLSNSVAEPSPPSKLTNDVDMVSDPQPLENNEPEKQITSSTEKP 817
+ D+L S K+ D + +V E +K D++S P S +++P
Sbjct: 748 -MKDTLQSEKDPED---VVKTVGEKVQLAKEEGANDVLSTPD-----------KSVSQQP 792
Query: 818 SESTEAPKDVEMVSTSLPSEINEPQQTDSITGTETARVEDQNRDGQDEKHDSKETKNDQY 877
S AP++ GT + N +G+ EK + TK+
Sbjct: 793 IGSASAPEN----------------------GTAGG---NPNIEGKKEKDICEGTKDKYN 827
Query: 878 IDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTM 937
I+KLK AA++A+SAAAVKAK LA QEEDQIRQL+ SLIEKQL KLEAKL+ FNE +++TM
Sbjct: 828 IEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTM 887
Query: 938 RVREQLERSRQRLYQERALIIQARLG--PSRVMQPSVPANRNPMTFANSVARPPMSMTSP 995
RVREQLERSRQRLY ERA II ARLG PS + S+P NR FAN RPPM M P
Sbjct: 888 RVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLPTNRIAANFANVAQRPPMGMAFP 947
Query: 996 RPPISRPMVPQSSTPSNPFGSTTTAGSSIRPSSQDNLSSV 1035
R P P P + +TT GSS DN+SSV
Sbjct: 948 R--PPMPRPPGFPVPGSFVAATTMTGSSDPSPGSDNVSSV 985
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 202 bits (515), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 176/325 (54%), Gaps = 32/325 (9%)
Query: 137 DFEAIRSRDSN-VHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIM 195
D E + R + VHV+P H WF+ + LE Q +P FF+GKS + TP+ YME RN I+
Sbjct: 163 DGEGVVKRFGDLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIV 222
Query: 196 KKFHSNPITQIELKDLSELEVG-SLDARQEVMEFLDYWGLINF------HPFPHVESSVA 248
K+ NP + + D L G ++ V FLD+WG+IN+ HP P + S
Sbjct: 223 SKYVENPEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDV 282
Query: 249 NSDGDRMTDADSDAAAKKGSLLEKLYRFEE----IKAGPPVAPMPSITFPAVPSGLFPES 304
D T+ + + + + ++ L +F++ K G + +PS+ G P+
Sbjct: 283 RED----TNGEVNVPSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSL------DGDSPDL 332
Query: 305 AIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFI 364
I ++ + HCN CS + QK+ D LC DCF++G+F S DF+
Sbjct: 333 DI-----RIREHLCDSHCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFV 387
Query: 365 LMVPGEAAG-VSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIE 423
+ P + G G WTDQETLLLLEA+ELY ENW +IA+HV +K+KAQCILHF+++P+E
Sbjct: 388 RVDPMKFYGDQDGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVE 447
Query: 424 DMFLDCDDDVDGNLKETTDDAPTNG 448
D LD + +V G T + PTNG
Sbjct: 448 DGLLD-NVEVSG---VTNTENPTNG 468
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 82/138 (59%), Gaps = 7/138 (5%)
Query: 831 STSLPSEINEPQQTDSITGTETARVEDQNRDGQDEKH-----DSKETKNDQYIDKLKHAA 885
S S+ SE ++ +++ + G E + ++ +N+ QD H + E + DK+ A
Sbjct: 526 SLSVLSE-DDRMKSEGMQGKEASLLDGENQQ-QDGAHKTSSQNGAEAQTPLPQDKVMAAF 583
Query: 886 VTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLER 945
LSAAA KAKL A EE +I++L+ +++ QL+++E KL F E++ + M+ EQ+E+
Sbjct: 584 RAGLSAAATKAKLFADHEEREIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEK 643
Query: 946 SRQRLYQERALIIQARLG 963
+RQR ERA ++ AR G
Sbjct: 644 TRQRFSAERARMLSARFG 661
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3
Length = 503
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 153/291 (52%), Gaps = 30/291 (10%)
Query: 150 VVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELK 209
+VP++ GWF +KIH +E ++ P FFNGKS +TP IY + R++++ + P + +
Sbjct: 19 IVPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTVT 78
Query: 210 DLSELEVGSLDARQEVMEFLDYWGLINFHPFP-------------HVESSVANSD--GDR 254
VG + A V FL+ WGLIN+ P HV+ +++N+
Sbjct: 79 ACRRNLVGDVCAIIRVHAFLEQWGLINYQIDPETRPAFRLPPISGHVQ-AISNTPIVTQE 137
Query: 255 MTDADSDAAAKKGSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEELAKLE 314
M + GS ++ + EE P + M +++ EE K +
Sbjct: 138 MLAQHPPPSTVGGSSSQEFVKLEEKHYSPSLNAM-------------EQTSPKEEDEKSD 184
Query: 315 G-PAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAG 373
P V+ C +C +CS+ YH K +D+C +C+ G+F S +SSDF+ M +
Sbjct: 185 KVPRVDKVCFTCGVNCSQTWYHNLKNKKYDICPNCYKQGRFSSSFNSSDFLCMDAIDFNH 244
Query: 374 VSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIED 424
W++QETLLLLEA+E Y ++WN+IA HV ++TK QC++HF+Q+PIED
Sbjct: 245 DEEKPWSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIPIED 295
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 834 LPSEINEPQQTDSITGTETARVEDQNRDGQDEKHDSKETK--NDQYIDKLKHAAVTALSA 891
LP + NE ++T + + Q+E ET N ++ + L+ A AL +
Sbjct: 313 LPFDENENPVLSTLTYLASIVQQGMKERKQNESVKQGETSFGNSEFKNPLERVAYYALKS 372
Query: 892 AAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLER 945
AA KAKL+A E Q+R+L SLI+ QL+KL+ K M+V EQLE+
Sbjct: 373 AAQKAKLIAAFENRQLRRLVFSLIQAQLEKLQLK-----------MKVLEQLEK 415
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC8 PE=1 SV=1
Length = 557
Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 152/302 (50%), Gaps = 18/302 (5%)
Query: 139 EAIRSRDSNVH--VVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMK 196
+A+R H ++P+ WF +KIH +E+++ P FFN S+ +TP Y + RN+I+
Sbjct: 68 KALRFLAKQTHPVIIPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKDTRNFIIN 127
Query: 197 KFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVA--NSDGDR 254
+ +P + + + + + ++ FL+ WGLIN+ P + S+ + G
Sbjct: 128 TYRLSPYEYLTITAVRRNVAMDVASIVKIHAFLEKWGLINYQIDPRTKPSLIGPSFTGHF 187
Query: 255 MTDADSDAAAKKGSLLEKLYRFEEIKAGPPVAPMPSITFPA---VPSGLFPES----AIA 307
D+ K L E + + +E++ G P FP + ++ + A+
Sbjct: 188 QVVLDTPQGLKP-FLPENVIK-QEVEGGDGAEPQVKKEFPVNLTIKKNVYDSAQDFNALQ 245
Query: 308 EELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMV 367
+E Y C++C + RYH + D +LC+ CF G FG++ SSDFI +
Sbjct: 246 DESRNSRQIHKVYICHTCGNESINVRYHNLRARDTNLCSRCFQEGHFGANFQSSDFIRL- 304
Query: 368 PGEAAGVSGGK-WTDQETLLLLEALELYKENWNEIAEHVATKTKAQ-CILHFVQMPIEDM 425
E G S K W+DQE LLLLE +E+Y++ W +IA+HV + + CI F+ +PIED
Sbjct: 305 --ENNGNSVKKNWSDQEMLLLLEGIEMYEDQWEKIADHVGGHKRVEDCIEKFLSLPIEDN 362
Query: 426 FL 427
++
Sbjct: 363 YI 364
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1
SV=1
Length = 469
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 140/289 (48%), Gaps = 51/289 (17%)
Query: 147 NVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQI 206
N+HV P++ WFSWT I+ E ++LP FF+ +S + P Y+ +RN I+K++ + +I
Sbjct: 47 NIHV-PSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKI 105
Query: 207 ELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKK 266
D+ V + + + V +FLD WGLIN++ S A+AK
Sbjct: 106 SFTDVRRTLVSDVVSIRRVFDFLDSWGLINYN---------------------SSASAKP 144
Query: 267 GSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNSCS 326
++EE +AG S P+ E+A + +CN C
Sbjct: 145 -------LKWEEKEAGKSAGDAAS-----EPATTVKETA-------------KRNCNGCK 179
Query: 327 ADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQETLL 386
A CS + C K D LC C+ + ++SS+F + E + S +W+D+E LL
Sbjct: 180 AICSIACFACDKY-DLTLCARCYVRSNYRVGINSSEFKRV---EISEESKPEWSDKEILL 235
Query: 387 LLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDG 435
LLEA+ Y ++W ++A HV +T+ C+ FV++P + F+ D DG
Sbjct: 236 LLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFVKESDSEDG 284
>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1
SV=2
Length = 1104
Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 140/293 (47%), Gaps = 58/293 (19%)
Query: 146 SNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQ 205
+N ++P++ WF + IH +E +ALP FFNGK++ +TP+IY+ RN+++ + NP
Sbjct: 445 TNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY 504
Query: 206 IELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAK 265
+ G + A V FL+ WGL+N+ D +S A
Sbjct: 505 LTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQ-----------------VDPESRPMA- 546
Query: 266 KGSLLEKLYRFEEIKAGPPVAPMPSITFPA-VPSGLFPESAIAEELAKLEGPAVEYHCNS 324
GPP P P A PSGL P L + PA + N
Sbjct: 547 ---------------MGPP--PTPHFNVLADTPSGLVPL-----HLRSPQVPAAQQMLNF 584
Query: 325 CSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQET 384
+ K Q +F L TD ++ +S +G +WT+QET
Sbjct: 585 PEKN-KEKPIDLQ---NFGLRTDIYSKKTLAKSKGAS-------------AGREWTEQET 627
Query: 385 LLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDGNL 437
LLLLEALE+YK++WN+++EHV ++T+ +CILHF+++PIED +L+ D G L
Sbjct: 628 LLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPL 680
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 899 LACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQER 954
LA EE +I+ L L+E Q++KLE KL F E++ + R +E LE+ RQ+L ER
Sbjct: 883 LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTER 938
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1
SV=3
Length = 1105
Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 140/293 (47%), Gaps = 58/293 (19%)
Query: 146 SNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQ 205
+N ++P++ WF + IH +E +ALP FFNGK++ +TP+IY+ RN+++ + NP
Sbjct: 446 TNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY 505
Query: 206 IELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAK 265
+ G + A V FL+ WGL+N+ D +S A
Sbjct: 506 LTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQ-----------------VDPESRPMA- 547
Query: 266 KGSLLEKLYRFEEIKAGPPVAPMPSITFPA-VPSGLFPESAIAEELAKLEGPAVEYHCNS 324
GPP P P A PSGL P L + PA + N
Sbjct: 548 ---------------MGPP--PTPHFNVLADTPSGLVPL-----HLRSPQVPAAQQMLNF 585
Query: 325 CSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQET 384
+ K Q +F L TD ++ +S +G +WT+QET
Sbjct: 586 PEKN-KEKPVDLQ---NFGLRTDIYSKKTLAKSKGAS-------------AGREWTEQET 628
Query: 385 LLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDGNL 437
LLLLEALE+YK++WN+++EHV ++T+ +CILHF+++PIED +L+ D G L
Sbjct: 629 LLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPL 681
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 899 LACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQER 954
LA EE +I+ L L+E Q++KLE KL F E++ + R +E LE+ RQ+L ER
Sbjct: 884 LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTER 939
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1
SV=2
Length = 1213
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 65/285 (22%)
Query: 150 VVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELK 209
++P++ WF + +H +E +ALP FFNGK++ +TP+IY+ RN+++ + NP +
Sbjct: 425 IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST 484
Query: 210 DLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKKGSL 269
G + A V FL+ WGLIN+ DA+S
Sbjct: 485 ACRRNLAGDVCAIMRVHAFLEQWGLINYQ-----------------VDAESRPT------ 521
Query: 270 LEKLYRFEEIKAGPPVAPMPSITFPAV---PSGLFPESAIAEELAKLEGPAVEYHCNSCS 326
P+ P P+ F + PSGL P P ++
Sbjct: 522 --------------PMGPPPTSHFHVLADTPSGLVPLQ-----------PKPPQQSSASQ 556
Query: 327 ADCSRKRYHCQKQAD---FDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQE 383
+ +K AD F L TD + S +AA + +WT+QE
Sbjct: 557 QMLNFPEKGKEKPADMQNFGLRTDMYTKKNVPSK-----------SKAAASATREWTEQE 605
Query: 384 TLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLD 428
TLLLLEALE+YK++WN+++EHV ++T+ +CILHF+++PIED +L+
Sbjct: 606 TLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLE 650
Score = 36.6 bits (83), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 519 VGQETGENIALKALREAFE-------AVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGP 571
VG T + L LR E P P F++ GNPVM+ AFL + P
Sbjct: 627 VGSRTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDP 686
Query: 572 DLTTASARSSLKSIS 586
+ +A+A+S+L+ S
Sbjct: 687 RVASAAAKSALEEFS 701
>sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1
SV=1
Length = 512
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 136/284 (47%), Gaps = 23/284 (8%)
Query: 148 VHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIE 207
++ +P WF W IH +E + FF S RTP +Y E R++I+ KF + ++
Sbjct: 12 LYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDTCRRLT 71
Query: 208 LKDLSELEVGSLDARQEVMEFLDYWGLINF----HPFPHVESSVANSDGDRMTDADSDAA 263
+ + VG ++ Q+V FL+ WGLINF H+ SV N+ ++ T A
Sbjct: 72 FTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHL-LSVDNAKIEQGTPAGIRVT 130
Query: 264 AKKGSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEELAKLEGPAVEYHCN 323
A SL I A PP+ T VP P ++ ++ + L+ P C
Sbjct: 131 ATPNSL-------RPITA-PPLVEERVETGIKVP----PLTSYSDVFSDLKKPDHVLVCA 178
Query: 324 SCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQE 383
C C Y + ++C CF NG +G + ++ DF L + AA V WT++E
Sbjct: 179 HCGERCDSPFYQ-HNKGIVNICEKCFKNGNYGENNTADDFKL-IGNSAAAV----WTEEE 232
Query: 384 TLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFL 427
LLLLE++ + ++W I++ V+TK++ CI +++P + +
Sbjct: 233 ILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLM 276
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 45/64 (70%)
Query: 897 KLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQERAL 956
K+LA QEE ++ QLA ++IE+QL+KL++KL F ++++++ + +E ++ + QER
Sbjct: 433 KILADQEEREMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEEKVIEGVKETIIQERVS 492
Query: 957 IIQA 960
++Q
Sbjct: 493 VLQC 496
>sp|O13788|SSR1_SCHPO SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1
Length = 527
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 13/298 (4%)
Query: 151 VPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKD 210
VP WF ++K+H +E++ P FF+GK+ +TP++Y E R++++ F N +
Sbjct: 54 VPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDFMISTFRLNSKVYLTFTA 113
Query: 211 LSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSV----ANSDGDRMTDADSDAAAKK 266
G + A V FL+ WGLIN++ P S + S + D
Sbjct: 114 CRRNLAGDVCAVLRVHRFLEQWGLINYNVNPDTRPSKIGPPSTSHFQILADTPRGLVPLL 173
Query: 267 GSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEE---LAKLEGPAVEY--- 320
+ R + + P +I P++ L + + + L+ L ++
Sbjct: 174 PPPSSSIPRSKAVTIEDPSIVRTNIYDPSLDDVLKGKGSTPNQKPSLSNLHENNIDQSDS 233
Query: 321 --HCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGK 378
HC C + Y Q +++C C+ +F S + +D+ V +
Sbjct: 234 PQHCYCCGNKFNESYYQSQTAQKYNVCISCYQQNRFPSPTTIADY-KEVAIQNKIEDDDT 292
Query: 379 WTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDGN 436
WT QE +LL E +E+Y ++W ++A HV TK+ +CIL F+ +P D L D V N
Sbjct: 293 WTAQELVLLSEGVEMYSDDWAKVASHVNTKSVEECILKFLNLPSSDKALFKMDKVHTN 350
>sp|Q8TAQ2|SMRC2_HUMAN SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1
SV=1
Length = 1214
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 133/285 (46%), Gaps = 65/285 (22%)
Query: 150 VVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELK 209
++P++ WF + +H +E +ALP FFNGK++ +TP+IY+ RN+++ + NP +
Sbjct: 425 IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST 484
Query: 210 DLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKKGSL 269
G + A V FL+ WGLIN+ DA+S
Sbjct: 485 ACRRNLAGDVCAIMRVHAFLEQWGLINYQ-----------------VDAESRPT------ 521
Query: 270 LEKLYRFEEIKAGPPVAPMPSITFPAV---PSGLFPESAIAEELAKLEGPAVEYHCNSCS 326
P+ P P+ F + PSGL P P ++
Sbjct: 522 --------------PMGPPPTSHFHVLADTPSGLVPLQ-----------PKTPQQTSASQ 556
Query: 327 ADCSRKRYHCQKQAD---FDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQE 383
+ +K D F L TD + S +AA + +WT+QE
Sbjct: 557 QMLNFPDKGKEKPTDMQNFGLRTDMYTKKNVPSK-----------SKAAASATREWTEQE 605
Query: 384 TLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLD 428
TLLLLEALE+YK++WN+++EHV ++T+ +CILHF+++PIED +L+
Sbjct: 606 TLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLE 650
Score = 36.6 bits (83), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 519 VGQETGENIALKALREAFE-------AVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGP 571
VG T + L LR E P P F++ GNPVM+ AFL + P
Sbjct: 627 VGSRTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDP 686
Query: 572 DLTTASARSSLKSIS 586
+ +A+A+S+L+ S
Sbjct: 687 RVASAAAKSALEEFS 701
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 21/130 (16%)
Query: 903 EEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQERALIIQARL 962
EE +I+ L L+E Q++KLE KL F E++ + R RE LE RQ+L +R +L
Sbjct: 880 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQL 939
Query: 963 GPSRVMQPSVPANRNPMTFANSVARPPMSMTSPRPPISRPMVPQ-SSTPSNPFGST---T 1018
+A AR + P S P P G+
Sbjct: 940 -----------------KYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPA 982
Query: 1019 TAGSSIRPSS 1028
G ++ P+S
Sbjct: 983 VHGLAVAPAS 992
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 131/313 (41%), Gaps = 60/313 (19%)
Query: 150 VVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELK 209
V+P++ WF+ KIH +E Q+LP FF + +TP++YM RN+++ + NP +
Sbjct: 306 VIPSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVT 365
Query: 210 DLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKKGSL 269
G A + +FL WGLIN+ DS K
Sbjct: 366 TARRNVSGDAAALFRLHKFLTKWGLINYQ-------------------VDSKLLPK---- 402
Query: 270 LEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNSCSADC 329
PP+ S A P GLFP + + + ++ N+ ++
Sbjct: 403 ----------NIEPPLTSQYSTRHDA-PRGLFPFESYKPSVQLPDMAKLKKMMNTSDSES 451
Query: 330 SRKRYHCQKQADFDLCT------------DCFNNGKFGSDMSSS-----DFILMVPGEAA 372
+ +Y + + +D T N GK +++S+S D L+ GE +
Sbjct: 452 TLYKYLKESKRKYDEITHPPSTTDDENGDKNDNGGKMNNEVSTSTSMTGDANLLEEGETS 511
Query: 373 G---------VSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIE 423
W+ ++ LL+ ++ + +W ++A++V K+ QCIL F+Q+PIE
Sbjct: 512 RPLKKVKILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPEQCILRFLQLPIE 571
Query: 424 DMFLDCDDDVDGN 436
D FL D + G+
Sbjct: 572 DKFLYGDGNGKGD 584
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 870 KETKNDQY-IDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAF 928
KE +DQ I+ +K + A+S+ ++ + A EE Q+ L LI Q++KL+AKL
Sbjct: 641 KEEISDQKPIEHIKEGSEIAISSLGYRSHIFATNEERQMNFLTNELIRLQMEKLDAKLNH 700
Query: 929 FNEMDNVTMRVREQLERSRQRLYQER 954
+++ R+ LER ++ L +R
Sbjct: 701 LKKLEKFMELERKTLERQQENLLIQR 726
>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1
Length = 1620
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 23/148 (15%)
Query: 297 PSGLFPESAIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQAD-------------FD 343
P L + ++L K + P E C C ADCS RY +
Sbjct: 840 PKKLTTTKSANDQLIKKKKPLFE--CKKCKADCSNVRYQLVNNSTALDGNILPEYFYPMI 897
Query: 344 LCTDCFNNGKFGSDMSSSDF--ILMVPGEAAGVSGGKWTDQETLLLLEALELYKENWNEI 401
+C +CF++G + + + SS F I E G WTD ETLLLLE +E++++NW EI
Sbjct: 898 ICVNCFSSGNYENFIQSSSFQRIEQHQPEEFG-----WTDIETLLLLEGIEIFRDNWQEI 952
Query: 402 AEHV-ATKTKAQCILHFVQMPIEDMFLD 428
++++ +KT QC+ HF+++PIED FL+
Sbjct: 953 SDYIGGSKTPEQCLTHFIRLPIEDEFLE 980
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 320 YHCNSCSADCSRK-RYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGK 378
YHCN C+ D S K R C K DFDLC +CF+ G + S+ ++ + +
Sbjct: 51 YHCNYCNKDISGKIRIKCSKCPDFDLCVECFSVGAEVTPHRSNHPYRVMDNLSFPLICPD 110
Query: 379 WTDQETLLLLEALELYK-ENWNEIAEHVATKTKAQCILHF 417
W E +LLLE +E+Y NW E+AEHV TKTKAQCI H+
Sbjct: 111 WNADEEILLLEGIEMYGLGNWAEVAEHVGTKTKAQCIDHY 150
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1
SV=1
Length = 548
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 320 YHCNSCSADCS-RKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGK 378
Y CN C D S R+ C DFDLC +CF+ G + +S ++ + +
Sbjct: 51 YCCNYCDKDLSGLVRFKCAVCMDFDLCVECFSVGVELNRHKNSHPYRVMDNLSFSLVTSD 110
Query: 379 WTDQETLLLLEALELYK-ENWNEIAEHVATKTKAQCILHF 417
W E +LLLEA+ Y NW E+A+HV +KT +CI HF
Sbjct: 111 WNADEEILLLEAIATYGFGNWKEVADHVGSKTTTECIKHF 150
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1
SV=1
Length = 487
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 319 EYHCNSCSADCSRK-RYHCQKQADFDLCTDCFNNGK----FGSD-----MSSSDFILMVP 368
+Y+C+ C D + K R C DFDLC +C + G D M + F L+ P
Sbjct: 44 KYNCDYCQKDITGKIRIKCAVCPDFDLCIECMSVGAEITPHKCDHPYRVMGNLTFPLICP 103
Query: 369 GEAAGVSGGKWTDQETLLLLEALELYK-ENWNEIAEHVATKTKAQCILHFVQMPIEDMFL 427
W+ + +LLLE LE+Y NW E+AEHV TK+K QC+ H+ + + F
Sbjct: 104 D---------WSADDEMLLLEGLEIYGLGNWAEVAEHVGTKSKEQCLEHYRNIYLNSPFF 154
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 321 HCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSG---- 376
+C C AD + R C + D +LCTDCF+ G + +V G + G
Sbjct: 8 YCVYCLADVTSLRLRCTECQDIELCTDCFSAGAEIGNHRRWHGYQLVDGGRFTLWGPEAE 67
Query: 377 GKWTDQETLLLLEALELYK-ENWNEIAEHV-ATKTKAQCILHFVQMPI 422
G WT +E LLL+A+E + NW ++A HV A++T + + H+V M I
Sbjct: 68 GGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPTEVMEHYVTMYI 115
>sp|Q9P7J7|ADA2_SCHPO Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ada2 PE=1 SV=1
Length = 437
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 316 PAVEYHCNSCSADCSRKRY-HCQKQADFDLCTDCFNNG-KFGSDMSSSDFILMVPGEAAG 373
P +YHCN C+ D +R + C + DFDLC CF +G G+ S + ++ +
Sbjct: 2 PPQKYHCNVCAQDITRSIHIRCVECVDFDLCIPCFTSGASLGTHHPSHPY-RIIETNSYP 60
Query: 374 VSGGKWTDQETLLLLEALE-LYKENWNEIAEHVAT-KTKAQCILHFVQMPIEDMFLDC 429
+ W E LLL++A E L NW +IA++V +TK +C H+++ IE DC
Sbjct: 61 IFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIES---DC 115
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 318 VEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNG-KFGSDMSSSDFILMVPGEAA-GVS 375
+Y+C +C D R HC + +FDLC CF G + G+ ++ + M G + V
Sbjct: 9 TKYNCTNCQDDIQGIRVHCAECENFDLCLQCFAAGAEIGAHQNNHSYQFMDTGTSILSVF 68
Query: 376 GGK--WTDQETLLLLEALELYK-ENWNEIAEHVATKT 409
GK WT +E + LL+A+E Y NW +I++H+ TK+
Sbjct: 69 RGKGAWTAREEIRLLDAIEQYGFGNWEDISKHIETKS 105
>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ADA2 PE=1 SV=1
Length = 434
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 319 EYHCNSCSADCS-RKRYHCQKQADFDLCTDCFNNGKF-GSDMSSSDFILMVPGEAAGVSG 376
++HC+ CSADC+ R R C ++DLC CF+ G + G D+ ++ +
Sbjct: 4 KFHCDVCSADCTNRVRVSCAICPEYDLCVPCFSQGSYTGKHRPYHDYRIIETNSYPILCP 63
Query: 377 GKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMF 426
D+E L+ A L NW +IA+H+ ++ K + H+++ +E +
Sbjct: 64 DWGADEELQLIKGAQTLGLGNWQDIADHIGSRGKEEVKEHYLKYYLESKY 113
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 321 HCNSCSADCSRKRYHCQKQADFDLCTDCFNNG-KFGSDMSSSDFILMVPGEAAGVSG--- 376
+C C A+ S R+ C + D +LC +CF+ G + G + L V G + G
Sbjct: 8 YCVYCLAEVSPLRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQL-VDGGRFTLWGPEA 66
Query: 377 -GKWTDQETLLLLEALELYK-ENWNEIAEHV-ATKTKAQCILHFVQMPI 422
G WT +E LLL+A+E + NW ++A HV A++T + + H+V M I
Sbjct: 67 EGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYI 115
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 321 HCNSCSADCSRKRYHCQKQADFDLCTDCFNNG-KFGSDMSSSDFILMVPGEAAGVSG--- 376
+C C A+ S R+ C + D +LC +CF+ G + G + L V G + G
Sbjct: 8 YCVYCLAEVSPLRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQL-VDGGRFTLWGPEA 66
Query: 377 -GKWTDQETLLLLEALELYK-ENWNEIAEHV-ATKTKAQCILHFVQMPI 422
G WT +E LLL+A+E + NW ++A HV A++T + + H+V M I
Sbjct: 67 EGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYI 115
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1
Length = 486
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 321 HCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSG---- 376
+C +C AD + R C + D +LC +CF+ G + V G + G
Sbjct: 8 YCVNCLADVTNLRIRCAECQDIELCPECFSAGAEIGNHRRWHGYQQVDGGRFSLWGPEAE 67
Query: 377 GKWTDQETLLLLEALELYK-ENWNEIAEHV-ATKTKAQCILHFVQMPI 422
G WT +E LL+A+E Y NW ++A HV A++T + + H+V M I
Sbjct: 68 GGWTSREEQSLLDAIEQYGFGNWEDMAAHVGASRTPQEVMDHYVSMYI 115
>sp|Q8CHV6|TAD2A_MOUSE Transcriptional adapter 2-alpha OS=Mus musculus GN=Tada2a PE=1 SV=1
Length = 443
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 322 CNSCSADCSRKRYHCQKQAD--FDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKW 379
C CS+ + C + F LC CF G F SD + V W
Sbjct: 17 CRGCSSYLTEPYIKCAECGPPPFFLCLQCFTRG-FEYKKHQSDHTYEIMTSDFPVLDPSW 75
Query: 380 TDQETLLLLEA-LELYKENWNEIAEHVATKTKAQC----ILHFVQMPI 422
T QE + LLEA ++ NW ++A + TKTK +C + HF+ P+
Sbjct: 76 TAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPL 123
>sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo sapiens GN=TADA2A PE=1 SV=3
Length = 443
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 322 CNSCSADCSRKRYHCQKQAD--FDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKW 379
C CS+ C + F LC CF G F SD + V W
Sbjct: 17 CRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRG-FEYKKHQSDHTYEIMTSDFPVLDPSW 75
Query: 380 TDQETLLLLEA-LELYKENWNEIAEHVATKTKAQC----ILHFVQMPI 422
T QE + LLEA ++ NW ++A + TKTK +C + HF+ P+
Sbjct: 76 TAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPL 123
>sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos taurus GN=TADA2A PE=2 SV=1
Length = 443
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 322 CNSCSADCSRKRYHCQKQAD--FDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKW 379
C CS+ C + F LC CF G F SD + V W
Sbjct: 17 CRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRG-FEYKKHQSDHTYEIMTSDFPVLDPSW 75
Query: 380 TDQETLLLLEA-LELYKENWNEIAEHVATKTKAQC----ILHFVQMPI 422
T QE + LLEA ++ NW ++A + TKTK +C + HF+ P+
Sbjct: 76 TAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPL 123
>sp|Q5ZJF3|TAD2A_CHICK Transcriptional adapter 2-alpha OS=Gallus gallus GN=TADA2A PE=2
SV=1
Length = 446
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 322 CNSCSADCSRKRYHCQKQAD--FDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKW 379
C CS+ + C + F LC CF G F SD + V W
Sbjct: 17 CRGCSSYLTEPYVKCAECGPPPFLLCLQCFTRG-FEYKKHQSDHTYEIMTSDFPVLDPNW 75
Query: 380 TDQETLLLLEA-LELYKENWNEIAEHVATKTKAQC----ILHFVQMPI 422
T QE + LLEA ++ NW ++A + TK+K +C + HF+ P+
Sbjct: 76 TAQEEMALLEAVMDCGFGNWQDVANQMCTKSKEECEKHYMKHFINNPL 123
>sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus norvegicus GN=Tada2a PE=2
SV=1
Length = 443
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 322 CNSCSADCSRKRYHCQKQAD--FDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKW 379
C CS+ C + F LC CF G F SD + V W
Sbjct: 17 CRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRG-FEYKKHQSDHTYEIMTSDFPVLDPSW 75
Query: 380 TDQETLLLLEA-LELYKENWNEIAEHVATKTKAQC----ILHFVQMPI 422
T QE + LLEA ++ NW ++A + TKTK +C + HF+ P+
Sbjct: 76 TAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPL 123
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 378 KWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILH 416
+WT++E +EAL LY W +I EHVATKT Q H
Sbjct: 26 RWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSH 64
>sp|P78316|NOP14_HUMAN Nucleolar protein 14 OS=Homo sapiens GN=NOP14 PE=1 SV=3
Length = 857
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 26/193 (13%)
Query: 609 KKEVAHSESIVAEMADRDIQKDETLEDINVK--------ECNSASVLDERD---LSNDHG 657
K+E H + AE R + KDE D NVK + N VLD+ D LS G
Sbjct: 280 KEEQEHLRKLEAERLRRMLGKDE---DENVKKPKHMSADDLNDGFVLDKDDRRLLSYKDG 336
Query: 658 DKKIEDSVPEEKRHAASLNEKPSEKLNGATGPANQDTPEKDEPGDLNELSNPKSPKDNQP 717
+E+ V EE+ AS E E+ + + G +DT E D P +L + ++
Sbjct: 337 KMNVEEDVQEEQSKEASDPESNEEEGDSSGG---EDTEESDSPDSHLDLESNVESEEENE 393
Query: 718 SIVEESNDLPSKVLQSSQKESGEGSSGEP----APPVDVEKDNSLLSDSLPSGKNEPDQR 773
+E P K L S ++ +G+ + E A P E+ SLL G++ +Q
Sbjct: 394 KPAKEQRQTPGKGLISGKERAGKATRDELPYTFAAPESYEELRSLL-----LGRSMEEQL 448
Query: 774 VLSNSVAEPSPPS 786
++ + + + PS
Sbjct: 449 LVVERIQKCNHPS 461
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.124 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,255,291
Number of Sequences: 539616
Number of extensions: 17565160
Number of successful extensions: 74604
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 1581
Number of HSP's that attempted gapping in prelim test: 66656
Number of HSP's gapped (non-prelim): 7934
length of query: 1038
length of database: 191,569,459
effective HSP length: 128
effective length of query: 910
effective length of database: 122,498,611
effective search space: 111473736010
effective search space used: 111473736010
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 67 (30.4 bits)