BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001649
         (1038 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9WVE9|ITSN1_RAT Intersectin-1 OS=Rattus norvegicus GN=Itsn1 PE=1 SV=1
          Length = 1217

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 15/145 (10%)

Query: 826 GLPKPDDPVISIMGARVEVNRKEFIPQISCLPNGKSLETAMDG-NLARGGGVLGLGPPAA 884
           GLP+P   V++ + A  ++N+   + Q+      K ++  + G  L      +    PAA
Sbjct: 52  GLPQP---VLAQIWALADMNKDGRMDQVEFSIAMKLIKLKLQGYQLPPALPPVMKQQPAA 108

Query: 885 YSNSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVVPQIVGSA--AAVPPSYS 942
            S++P FG  G A    L+  +P+  P  +IP +  S      P +V S   AAVPP  +
Sbjct: 109 ISSAPAFGIGGMAGMPPLTAVAPV--PMGSIPVVGMS------PPLVSSVPQAAVPPLAN 160

Query: 943 QPPPFIVSV-AGAPSAITGPLRPNF 966
             PP I  + A A  A T P   +F
Sbjct: 161 GAPPVIQPLPAFAHPAATLPKSSSF 185


>sp|Q6ID77|MED11_ARATH Mediator of RNA polymerase II transcription subunit 11
           OS=Arabidopsis thaliana GN=MED11 PE=1 SV=1
          Length = 115

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 166 QDDNTAVSSIQANESRTESSAIDVPLPQGSVNEENNGAEPSGPEKLPVNSEC---LQPEK 222
           Q  NT++  +Q  E+R     + V    G V EE   A PSGP+K  VNS C   +Q  K
Sbjct: 4   QTQNTSLQRLQNVENR----VVKVLELAGGVMEE--LASPSGPKKEFVNSHCREFMQSMK 57

Query: 223 EEDVKTKTDNNELCSHGKLDDIDMEGKPPDHVATSKL 259
           +  V  + +    C +   +  D   +  + +   KL
Sbjct: 58  DIQVTLREEIKSACEYRPFEKCDYNARIANEICFQKL 94


>sp|Q6DG03|DMTF1_DANRE Cyclin-D-binding Myb-like transcription factor 1 OS=Danio rerio
           GN=dmtf1 PE=2 SV=1
          Length = 645

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 121 WITVKSLLGHSSSQVQDRARALFDSWNQGRVSE 153
           W T+ S LG S+S V+DR R + D+ N G+ +E
Sbjct: 240 WATIGSALGRSASSVKDRCRLMKDTCNTGKWTE 272


>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3
          Length = 1721

 Score = 34.3 bits (77), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 15/145 (10%)

Query: 826 GLPKPDDPVISIMGARVEVNRKEFIPQISCLPNGKSLETAMDG-NLARGGGVLGLGPPAA 884
           GLP+P   V++ + A  ++N    + Q+      K ++  + G  L      +    P A
Sbjct: 52  GLPQP---VLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQPVA 108

Query: 885 YSNSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVVPQIVGSA--AAVPPSYS 942
            S++P FG  G A+   L+  +P+  P  +IP +  S      P +V S   AAVPP  +
Sbjct: 109 ISSAPAFGMGGIASMPPLTAVAPV--PMGSIPVVGMS------PTLVSSVPTAAVPPLAN 160

Query: 943 QPPPFIVSV-AGAPSAITGPLRPNF 966
             PP I  + A A  A T P   +F
Sbjct: 161 GAPPVIQPLPAFAHPAATLPKSSSF 185


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.129    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,967,794
Number of Sequences: 539616
Number of extensions: 19483414
Number of successful extensions: 49098
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 44320
Number of HSP's gapped (non-prelim): 1593
length of query: 1038
length of database: 191,569,459
effective HSP length: 128
effective length of query: 910
effective length of database: 122,498,611
effective search space: 111473736010
effective search space used: 111473736010
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)