Query 001649
Match_columns 1038
No_of_seqs 79 out of 81
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 15:50:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001649.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_948-951//hhsearch_pdb/001649hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wjt_A Transcription elongatio 1.0 1 1 90.8 4.4 66 96-161 31-97 (103)
2 1pqv_S STP-alpha, transcriptio 1.0 1 1 86.6 6.8 75 75-155 6-81 (309)
3 2xpp_A IWS1, ECU08_0440; trans 1.0 1 1 71.4 7.6 127 19-150 7-138 (145)
4 3nfq_A Transcription factor IW 1.0 1 1 70.5 9.4 129 20-153 16-156 (170)
5 3tpo_A Importin subunit alpha- 1.0 1 1 34.5 8.6 106 20-143 76-186 (529)
6 3ul1_B Importin subunit alpha- 1.0 1 1 33.3 8.1 102 22-141 59-165 (510)
7 4b8j_A Importin subunit alpha- 1.0 1 1 25.5 9.3 108 19-143 73-184 (528)
8 2jdq_A Importin alpha-1 subuni 1.0 1 1 25.3 5.9 24 118-141 106-129 (450)
9 4db6_A Armadillo repeat protei 1.0 1 1 25.3 7.1 22 58-79 84-105 (210)
10 1wa5_B Importin alpha subunit; 1.0 1 1 23.3 10.1 108 20-145 87-199 (530)
No 1
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=1.00 E-value=1 Score=90.83 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 99999999986203531335304847878433179-9988999999999731258667756677122
Q 001649 96 ESITAMMGALEKLHIDYELSVSSGIWITVKSLLGH-SSSQVQDRARALFDSWNQGRVSEALDHDVKC 161 (1038)
Q Consensus 96 e~ilalL~ALekLPVd~e~Lks~~igktV~~L~~H-~n~~Iq~kAr~Lvd~Wk~~v~~~~~~~d~~~ 161 (1038)
+-++.+|+.|+.+||++++|+++.||++|+.||+| .+.+|+++|+.|+.+||+.+......+...+
T Consensus 31 ~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~v~~~~~~~g~~~ 97 (103)
T 1wjt_A 31 EGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRTTKGERE 97 (103)
T ss_dssp SSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHTCCSCCCCCCSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999998578998999987656499999884699589999999999999999887412479999
No 2
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=1.00 E-value=1 Score=86.63 Aligned_cols=75 Identities=9% Similarity=0.221 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999987069999720499999999998-620353133530484787843317999889999999997312586677
Q 001649 75 IDRWLKQVQKFGNNTNEGFVEESITAMMGAL-EKLHIDYELSVSSGIWITVKSLLGHSSSQVQDRARALFDSWNQGRVSE 153 (1038)
Q Consensus 75 L~~WL~~aqk~g~~~~d~~~ee~ilalL~AL-ekLPVd~e~Lks~~igktV~~L~~H~n~~Iq~kAr~Lvd~Wk~~v~~~ 153 (1038)
|.+|.+...+ .+ . -++-++.+|+.| +.+||++++|+++.||++|+.|++|.+.+|+++|+.|+++||+.+...
T Consensus 6 l~~~~~~L~k-~~----~-~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~~v~~~ 79 (309)
T 1pqv_S 6 VLVHVKNLEK-NK----S-NDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKDAINKN 79 (309)
T ss_pred HHHHHHHHHC-CC----C-CHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999863-68----9-9899999999987638988999974875699998873897899999999999999987775
Q ss_pred CC
Q ss_conf 56
Q 001649 154 AL 155 (1038)
Q Consensus 154 ~~ 155 (1038)
..
T Consensus 80 ~~ 81 (309)
T 1pqv_S 80 KR 81 (309)
T ss_pred CC
T ss_conf 05
No 3
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=1.00 E-value=1 Score=71.37 Aligned_cols=127 Identities=17% Similarity=0.114 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 24389999998410012---432145655548999999862033257778876294377999999998706999972049
Q 001649 19 PSRVEELVGIMQKEKDF---VVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVE 95 (1038)
Q Consensus 19 ~~rV~eLvslMk~~k~~---v~kn~~d~~rq~~~~a~~iaaTen~DcL~~FIql~Gl~~L~~WL~~aqk~g~~~~d~~~e 95 (1038)
.+.+.+|+..|...-.. ...+---++....++-.+.+.-.+.+.-..||..|-|-+|..||.-.-. | .-+..
T Consensus 7 ~~~~~~l~~~M~~Aa~~D~~a~~~~~PA~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpD-g----sLP~~ 81 (145)
T 2xpp_A 7 LEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPD-K----SMPNI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTT-S----CCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC-C----CCCCH
T ss_conf 999999999999999999998776985889996599999997348999999885779999998182999-9----99978
Q ss_pred HHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCCC
Q ss_conf 9999999998620353133530484787843317999--889999999997312586
Q 001649 96 ESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHSS--SQVQDRARALFDSWNQGR 150 (1038)
Q Consensus 96 e~ilalL~ALekLPVd~e~Lks~~igktV~~L~~H~n--~~Iq~kAr~Lvd~Wk~~v 150 (1038)
..-.+||++|..|||+.++|+++|+|+.|.-|.+|+. .+++++|+.|+++|..-+
T Consensus 82 ~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi 138 (145)
T 2xpp_A 82 KIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEV 138 (145)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999997899999830389780115565499537899999999999987877
No 4
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=1.00 E-value=1 Score=70.54 Aligned_cols=129 Identities=17% Similarity=0.183 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHCCHH--HHHHH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 4389999998410012--43214--------5655548999999862033257778876294377999999998706999
Q 001649 20 SRVEELVGIMQKEKDF--VVKNI--------GDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNT 89 (1038)
Q Consensus 20 ~rV~eLvslMk~~k~~--v~kn~--------~d~~rq~~~~a~~iaaTen~DcL~~FIql~Gl~~L~~WL~~aqk~g~~~ 89 (1038)
+.|..|+.-|...... ...|. --+++.-.++-.+++.-...+.-..||..|.|-+|..||.-.-. |.
T Consensus 16 d~i~~L~~~M~~Aa~~D~~~~n~~~~~~~~~~PAl~KLkmL~~V~~~L~k~~L~~~~ld~giL~~l~~WLePLpD-gS-- 92 (170)
T 3nfq_A 16 EKILRLKDEMNIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWLEPLPD-GS-- 92 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHTCGGGHHHHHHTTHHHHHHHHHSCCTT-SC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC-CC--
T ss_conf 999999999999999869999764124654565999985189999998278899999874659999998275889-99--
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9720499999999998620353133530484787843317999--889999999997312586677
Q 001649 90 NEGFVEESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHSS--SQVQDRARALFDSWNQGRVSE 153 (1038)
Q Consensus 90 ~d~~~ee~ilalL~ALekLPVd~e~Lks~~igktV~~L~~H~n--~~Iq~kAr~Lvd~Wk~~v~~~ 153 (1038)
-+....-.+||.+|..|||+.++|+.+++||.|.-|.+|+. .+++.+|..|++.|...+-.-
T Consensus 93 --LP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI~~~ 156 (170)
T 3nfq_A 93 --LPSFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPIIGA 156 (170)
T ss_dssp --CCCHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCCC--
T ss_pred --CCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf --9857999999999997899999976279782320011598536789999999999988998576
No 5
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=1.00 E-value=1 Score=34.50 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 43899999984100124321456555489999998620332577788762943779999999987069999720499999
Q 001649 20 SRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESIT 99 (1038)
Q Consensus 20 ~rV~eLvslMk~~k~~v~kn~~d~~rq~~~~a~~iaaTen~DcL~~FIql~Gl~~L~~WL~~aqk~g~~~~d~~~ee~il 99 (1038)
..+++||..++..--.+. .+++..+--+...++....+.+|+.|++..|=++|+.... .+...
T Consensus 76 ~~l~~lv~~l~s~d~~~q-------~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~----------~~~q~ 138 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQ-------LQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC----------SPIQF 138 (529)
T ss_dssp CCHHHHHHHHTSSCHHHH-------HHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC----------HHHHH
T ss_pred HHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCC----------HHHHH
T ss_conf 899999998569999999-------9999999998727898449999988899999998768998----------99999
Q ss_pred HHHHHHHHHCC----CHHHHHCCC-HHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999862035----313353048-478784331799988999999999
Q 001649 100 AMMGALEKLHI----DYELSVSSG-IWITVKSLLGHSSSQVQDRARALF 143 (1038)
Q Consensus 100 alL~ALekLPV----d~e~Lks~~-igktV~~L~~H~n~~Iq~kAr~Lv 143 (1038)
..+.||-.+-- ....+...| |..+| +|+.+.+.+++..|-..+
T Consensus 139 ~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv-~LL~s~~~~v~e~A~~aL 186 (529)
T 3tpo_A 139 ESAWALTNIASGTSEQTKAVVDGGAIPAFI-SLLASPHAHISEQAVWAL 186 (529)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHH
T ss_conf 999999999749999999999888899999-987699989999999999
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=1.00 E-value=1 Score=33.30 Aligned_cols=102 Identities=16% Similarity=0.086 Sum_probs=45.0
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 89999998410012432145655548999999862033257778876294377999999998706999972049999999
Q 001649 22 VEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESITAM 101 (1038)
Q Consensus 22 V~eLvslMk~~k~~v~kn~~d~~rq~~~~a~~iaaTen~DcL~~FIql~Gl~~L~~WL~~aqk~g~~~~d~~~ee~ilal 101 (1038)
|++||..++-.-..+.+ +++..+--+.+.|+.--.+..|+.|++..|=+.|+.... .++-..-
T Consensus 59 i~~~v~~l~s~d~~~q~-------~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~----------~~lq~~A 121 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQL-------QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC----------SPIQFES 121 (510)
T ss_dssp HHHHHHHHTSSCHHHHH-------HHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTC----------HHHHHHH
T ss_pred HHHHHHHHCCCCHHHHH-------HHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCC----------HHHHHHH
T ss_conf 99999984599999999-------999999998657889629999988888999998778998----------9999999
Q ss_pred HHHHHHHCC----CHHHHHC-CCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999862035----3133530-484787843317999889999999
Q 001649 102 MGALEKLHI----DYELSVS-SGIWITVKSLLGHSSSQVQDRARA 141 (1038)
Q Consensus 102 L~ALekLPV----d~e~Lks-~~igktV~~L~~H~n~~Iq~kAr~ 141 (1038)
..||-.+=- ...++.. +.|..+|..| .+.+.+|+..|-.
T Consensus 122 a~aL~nias~~~e~~~~vv~~GaIp~Lv~lL-~s~~~~v~e~A~~ 165 (510)
T 3ul1_B 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVW 165 (510)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHH
T ss_conf 9999999649999999999788799999988-6999899999999
No 7
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=25.54 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 24389999998410012432145655548999999862033257778876294377999999998706999972049999
Q 001649 19 PSRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESI 98 (1038)
Q Consensus 19 ~~rV~eLvslMk~~k~~v~kn~~d~~rq~~~~a~~iaaTen~DcL~~FIql~Gl~~L~~WL~~aqk~g~~~~d~~~ee~i 98 (1038)
...++.|+..++.....+... ++ ..+.+ ++..+..+..+.+++.+++..|-+.|+... + .+..
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~---A~---~~L~~-l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~------~----~~v~ 135 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLE---AT---TQFRK-LLSIERSPPIEEVIQSGVVPRFVQFLTRED------F----PQLQ 135 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHH---HH---HHHHH-HHTCSSSCCHHHHHHTTCHHHHHHHHTCTT------C----HHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHH---HH---HHHHH-HHCCCCCCHHHHHHHCCCHHHHHHHHCCCC------C----HHHH
T ss_conf 778999999876999999999---99---99999-814777962999998887999999847899------7----8999
Q ss_pred HHHHHHHHHHCCC----HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999998620353----13353048478784331799988999999999
Q 001649 99 TAMMGALEKLHID----YELSVSSGIWITVKSLLGHSSSQVQDRARALF 143 (1038)
Q Consensus 99 lalL~ALekLPVd----~e~Lks~~igktV~~L~~H~n~~Iq~kAr~Lv 143 (1038)
...+.+|..+-.. ...+...++-...-+|+.+.+..|+..|-..+
T Consensus 136 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL 184 (528)
T 4b8j_A 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWAL 184 (528)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999999679988799999688678999885699999999999999
No 8
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=1.00 E-value=1 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=9.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 484787843317999889999999
Q 001649 118 SGIWITVKSLLGHSSSQVQDRARA 141 (1038)
Q Consensus 118 ~~igktV~~L~~H~n~~Iq~kAr~ 141 (1038)
.++-...-+|+.+.+.+||..|-.
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~ 129 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVW 129 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 898899999886998899999999
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=1.00 E-value=1 Score=25.26 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 3325777887629437799999
Q 001649 58 ENRDCLDRFIQLDGLGLIDRWL 79 (1038)
Q Consensus 58 en~DcL~~FIql~Gl~~L~~WL 79 (1038)
.+.+....+++.+++..|-.-|
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL 105 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLL 105 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9928999999888888999998
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=1.00 E-value=1 Score=23.31 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 43899999984100124321456555489999998620332577788762943779999999987069999720499999
Q 001649 20 SRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESIT 99 (1038)
Q Consensus 20 ~rV~eLvslMk~~k~~v~kn~~d~~rq~~~~a~~iaaTen~DcL~~FIql~Gl~~L~~WL~~aqk~g~~~~d~~~ee~il 99 (1038)
..++.|+..++.....+.. ........|+..+....++.+++.+++..|-+.|+... + .+...
T Consensus 87 ~~i~~lv~~L~s~~~~~~~-------~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~------~----~~v~~ 149 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQL-------SATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ------P----EMLQL 149 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHH-------HHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS------C----HHHHH
T ss_pred HHHHHHHHHHCCCCHHHHH-------HHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHCCCC------C----HHHHH
T ss_conf 7899999987599999999-------99999999847899965999988888999999847999------7----79999
Q ss_pred HHHHHHHHHCCC----HHHHH-CCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 999998620353----13353-04847878433179998899999999973
Q 001649 100 AMMGALEKLHID----YELSV-SSGIWITVKSLLGHSSSQVQDRARALFDS 145 (1038)
Q Consensus 100 alL~ALekLPVd----~e~Lk-s~~igktV~~L~~H~n~~Iq~kAr~Lvd~ 145 (1038)
..+.+|-.+-.. ...+. ...+..++.-| .+.+.+|+..|-..+..
T Consensus 150 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~~ 199 (530)
T 1wa5_B 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGN 199 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_conf 999999999679989899999779789999998-69988999999999999
Done!