BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001652
(1037 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 195/345 (56%), Gaps = 25/345 (7%)
Query: 132 KKRLFNDLLTAKGNIKVFCRTRPLFEDEGP----SVVEFTDDCTIRVNTGDDTISNPKKD 187
+KR +N + KG I+V+CR RPL E E ++ D+ T+ DD +K
Sbjct: 1 RKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDD----KRKQ 56
Query: 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYA 247
+DRV+ Q ++F D + VQSA+DGYNV IFAYGQT SGKT T+ G + GL
Sbjct: 57 HIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTP 116
Query: 248 RCFEELFDLSNSDTTATARFNFAVTVF--ELYNEQLRELL-PQTGNGLAKIRLQSLESSI 304
R +ELF++ D+ RF+F++ + ELY + L +LL P++ L K+ ++ +
Sbjct: 117 RATKELFNILKRDS---KRFSFSLKAYMVELYQDTLVDLLLPKSARRL-KLEIKKDSKGM 172
Query: 305 ELVQEKVDNPLEFSKVLKSAFQSRGND---VSKFNV------SHLIIMIHIYYNNLITGE 355
V+ P+ + L+ + RG++ VS N+ SHLI+ + I +L T
Sbjct: 173 VFVENVTTIPISTLEELRMILE-RGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQS 231
Query: 356 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 415
KLS VDLAGSE + +G ++ + + KSLSALGDV+ +L+S +PY N
Sbjct: 232 AARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHK 291
Query: 416 LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 460
LT +++DSLG ++KTLM VN+ P +N+ ET +SL ++SR R+ V
Sbjct: 292 LTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIV 336
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 186/335 (55%), Gaps = 21/335 (6%)
Query: 142 AKGNIKVFCRTRPLFED--EGPSVVEFTDDCTIRVNTGDDTI-----SNPKKDFEFDRVY 194
+KGNI+V R RP+ ++ EGP E T+ T + DD+I FE D+V+
Sbjct: 2 SKGNIRVIARVRPVTKEDGEGP---EATNAVTFDAD--DDSIIHLLHKGKPVSFELDKVF 56
Query: 195 GPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELF 254
P Q ++F +VQ V S +DG+NV IFAYGQT +GKT+TMEG++ + G+ R + LF
Sbjct: 57 SPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLF 116
Query: 255 DLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS----IELVQEK 310
+ + + V+ E+YNE LR+LL + +IRL S L + +
Sbjct: 117 S-EVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQ 175
Query: 311 VDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENLYSKLSLVDL 366
V + + +KV + +R + + N SH ++++ + + TG KL+LVDL
Sbjct: 176 VQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDL 235
Query: 367 AGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGE 426
AGSE + G R+ + H+ KSLSALGDV+++L SR+ VP+ NS LT +L DSL
Sbjct: 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSG 295
Query: 427 SSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 461
SKTLM+V + P N SETL SL F+ R RS L
Sbjct: 296 DSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 189 bits (479), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 181/332 (54%), Gaps = 21/332 (6%)
Query: 143 KGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHV 198
KG I+V+CR RPL E E + + D+ T+ DD K +DRV+ +
Sbjct: 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDD----KAKQHMYDRVFDGNA 59
Query: 199 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSN 258
Q ++F D + VQSA+DGYNV IFAYGQT SGKT T+ G+ + GL R ELF +
Sbjct: 60 TQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMK 119
Query: 259 SDTTATARFNFAVTVF--ELYNEQLRELL-PQTGNGLA---KIRLQSLESSIELVQEKVD 312
D+ +F+F++ + ELY + L +LL P+ L K + + S + +
Sbjct: 120 KDSN---KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSIS 176
Query: 313 NPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 368
E +++ + R + N SHLI+ + I NL T KLS VDLAG
Sbjct: 177 TYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAG 236
Query: 369 SEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESS 428
SE + +G ++ + + KSLSALGDV+S+L+S +PY N LT +++DSLG ++
Sbjct: 237 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNA 296
Query: 429 KTLMIVNICPNAANMSETLSSLNFSSRARSTV 460
KTLM VNI P +N+ ET +SL ++SR RS V
Sbjct: 297 KTLMFVNISPAESNLDETHNSLTYASRVRSIV 328
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 185/356 (51%), Gaps = 47/356 (13%)
Query: 143 KGNIKVFCRTRPLFEDEG---------PSVVEFTDDCTIRVNTGD-----DTISN----- 183
KGNI+VFCR RP+ E PS D R++ T+S
Sbjct: 21 KGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPP 80
Query: 184 PKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD- 242
P+ DF FDRV+ P GQ E+F ++ VQSALDGY V IFAYGQT SGKT TMEG
Sbjct: 81 PRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGD 140
Query: 243 ---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-----NGLAK 294
GL R LF ++ + ++F + E+YNE +R+LL TG G +
Sbjct: 141 PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLL-ATGTRKGQGGECE 199
Query: 295 IRLQSLESSIEL-----------VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIM 343
IR ++ S EL +++VD L ++ ++ ++ N+ S + SH +
Sbjct: 200 IR-RAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERS--SRSHSVFQ 256
Query: 344 IHIYYNNLITGENLYSKLSLVDLAGSE----GLIAEDDSGERITDVLHVMKSLSALGDVL 399
+ I + G + LSLVDLAGSE GL ER+ + + SLS LG V+
Sbjct: 257 LQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVI 316
Query: 400 SSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR 455
+L++++ VPY NS LT +L +SLG S+K LM VNI P N+SE+L+SL F+S+
Sbjct: 317 MALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 116/352 (32%), Positives = 189/352 (53%), Gaps = 22/352 (6%)
Query: 131 EKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVV---EFTDDCTIRVNTGDDTISNP--K 185
E+K L N ++ +GNI+VFCR RP E E + + D+ T+ + + D + +
Sbjct: 54 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 113
Query: 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGL 245
+ F FD+V+ P Q+++F V P +QSALDGYN+ IFAYGQT SGKT+TM+G G+
Sbjct: 114 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGV 173
Query: 246 YARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL-QSLESSI 304
R + LFD + T E+YNE L +LL + +IR+ ++ ++ I
Sbjct: 174 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EIRMAKNNKNDI 232
Query: 305 ---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGE 355
+ +E V +P ++ +A +R GN+ S + SH + + + + E
Sbjct: 233 YVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLELIGRHAEKQE 290
Query: 356 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 415
++LVDLAGSE + R+T+ ++ +SLS L +V+ +L ++D +PY NS
Sbjct: 291 ISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSK 346
Query: 416 LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 467
LT +L SLG +SKTLM +N+ P E++ SL F++ S ++ R+
Sbjct: 347 LTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 398
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 141/432 (32%), Positives = 225/432 (52%), Gaps = 66/432 (15%)
Query: 62 STKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEA 121
++K+ LK++I +KE L+++ D + LG+ ++L+++ ++
Sbjct: 2 ASKIAALKEKIAALKEKIAALKEKIKDTE-------------LGM-----KELNEILIKE 43
Query: 122 EARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT- 180
E ++ L N+L +GNI+V+ R RP ++ +E +D I VN DD
Sbjct: 44 ETV-------RRTLHNELQELRGNIRVYLRIRPALKN-----LENSDTSLINVNEFDDNS 91
Query: 181 ---------ISNPKK--DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTH 229
I N + +F+FD+++ ++F +V VQS+LDGYNV+IFAYGQT
Sbjct: 92 GVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTG 151
Query: 230 SGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 289
SGKT TM G+ +F+ N T + E+YNE + +LL
Sbjct: 152 SGKTFTMLNPGD--GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDN 209
Query: 290 N-------GLA-KIR--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDV 332
N GL +IR + +S++L +E V+ L+ + L+S + N+
Sbjct: 210 NNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEH 269
Query: 333 SKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSL 392
S + SH I +IH+ +N TG + Y L+LVDLAGSE + G+R+ + ++ KSL
Sbjct: 270 S--SRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSL 327
Query: 393 SALGDVLSSLT---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449
SALGDV+ +L S K +P+ NS LT +L SL SKTLM VNI P++++++ETL+S
Sbjct: 328 SALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNS 387
Query: 450 LNFSSRARSTVL 461
L F+S+ ST L
Sbjct: 388 LRFASKVNSTRL 399
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/352 (32%), Positives = 189/352 (53%), Gaps = 22/352 (6%)
Query: 131 EKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVV---EFTDDCTIRVNTGDDTISNP--K 185
E+K L N ++ +GNI+VFCR RP E E + + D+ T+ + + D + +
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 102
Query: 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGL 245
+ F FD+V+ P Q+++F V P +QSALDGYN+ IFAYGQT SGKT+TM+G G+
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGV 162
Query: 246 YARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL-QSLESSI 304
R + LFD + T E+YNE L +LL + +IR+ ++ ++ I
Sbjct: 163 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EIRMAKNNKNDI 221
Query: 305 ---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGE 355
+ +E V +P ++ +A +R GN+ S + SH + + + + E
Sbjct: 222 YVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLELIGRHAEKQE 279
Query: 356 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 415
++LVDLAGSE + R+T+ ++ +SLS L +V+ +L ++D +PY NS
Sbjct: 280 ISVGSINLVDLAGSES----PKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSK 335
Query: 416 LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 467
LT +L SLG +SKTLM +N+ P E++ SL F++ S ++ R+
Sbjct: 336 LTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 387
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 185/351 (52%), Gaps = 20/351 (5%)
Query: 131 EKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVV---EFTDDCTIRVNTGDDTISNP--K 185
E+K L N ++ +GNI+VFCR RP E E + + D+ T+ + + D + +
Sbjct: 40 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 99
Query: 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGL 245
+ F FD+V+ P Q+++F V P +QSALDGYN+ IFAYGQT SGKT+TM+G G+
Sbjct: 100 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGV 159
Query: 246 YARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI- 304
R + LFD + T E+YNE L +LL + ++ ++ I
Sbjct: 160 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 219
Query: 305 --ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGEN 356
+ +E V +P ++ +A +R GN+ S + SH + + + + E
Sbjct: 220 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLELIGRHAEKQEI 277
Query: 357 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSML 416
++LVDLAGSE + R+T+ ++ +SLS L +V+ +L ++D +PY NS L
Sbjct: 278 SVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKL 333
Query: 417 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 467
T +L SLG +SKTLM +N+ P E++ SL F++ S ++ R+
Sbjct: 334 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 384
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 179/329 (54%), Gaps = 21/329 (6%)
Query: 142 AKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQA 201
A+ NIKV CR RPL E E V D + G+DT+ K + FDRV+ Q
Sbjct: 5 AECNIKVMCRFRPLNESE----VNRGDKYIAKFQ-GEDTVVIASKPYAFDRVFQSSTSQE 59
Query: 202 ELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDLS 257
++++D + V+ L+GYN +IFAYGQT SGKTHTMEG HD G+ R +++F+
Sbjct: 60 QVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYI 119
Query: 258 NSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA----KIRLQSLESSIELVQEKVDN 313
S F+ V+ FE+Y +++R+LL + L+ K R+ ++ E V +
Sbjct: 120 YS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERF---VCS 175
Query: 314 PLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 369
P E + +R V+ N SH I +I++ N T + L KL LVDLAGS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSK 429
E + G + + ++ KSLSALG+V+S+L VPY +S +T++L DSLG + +
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 430 TLMIVNICPNAANMSETLSSLNFSSRARS 458
T +++ P++ N SET S+L F RA++
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKT 324
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 179/329 (54%), Gaps = 21/329 (6%)
Query: 142 AKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQA 201
A+ NIKV CR RPL E E V D + G+DT+ K + FDRV+ Q
Sbjct: 5 AECNIKVMCRFRPLNESE----VNRGDKYIAKFQ-GEDTVVIASKPYAFDRVFQSSTSQE 59
Query: 202 ELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDLS 257
++++D + V+ L+GYN +IFAYGQT SGKTHTMEG HD G+ R +++F+
Sbjct: 60 QVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYI 119
Query: 258 NSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA----KIRLQSLESSIELVQEKVDN 313
S F+ V+ FE+Y +++R+LL + L+ K R+ ++ E V +
Sbjct: 120 YS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERF---VCS 175
Query: 314 PLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 369
P E + +R V+ N SH I +I++ N T + L KL LVDLAGS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSK 429
E + G + + ++ KSLSALG+V+S+L VPY +S +T++L DSLG + +
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 430 TLMIVNICPNAANMSETLSSLNFSSRARS 458
T +++ P++ N SET S+L F RA++
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKT 324
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 186/361 (51%), Gaps = 39/361 (10%)
Query: 132 KKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------I 181
++ L N+L +GNI+V+CR RP ++ +E +D I VN DD I
Sbjct: 2 RRTLHNELQELRGNIRVYCRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKI 56
Query: 182 SNPKK--DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGS 239
N + +F+FD+++ ++F +V VQS+LDGYNV IFAYGQT SGKT TM
Sbjct: 57 QNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP 116
Query: 240 SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS 299
G+ +F+ N T + E+YNE + +LL N +
Sbjct: 117 G--DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSI-G 173
Query: 300 LESSIELVQE------------KVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIM 343
L+ I QE K+++ +LK A + R + N SH I +
Sbjct: 174 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 233
Query: 344 IHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 403
IH+ +N TG + Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L
Sbjct: 234 IHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 293
Query: 404 ---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 460
S K +P+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST
Sbjct: 294 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 353
Query: 461 L 461
L
Sbjct: 354 L 354
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 172 bits (436), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 178/329 (54%), Gaps = 21/329 (6%)
Query: 142 AKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQA 201
A+ NIKV CR RPL E E V D + G+DT+ K + FDRV+ Q
Sbjct: 5 AECNIKVMCRFRPLNESE----VNRGDKYVAKFQ-GEDTVMIASKPYAFDRVFQSSTSQE 59
Query: 202 ELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDLS 257
++++D + V+ L+GYN +IFAYGQT SGK HTMEG HD G+ R +++F+
Sbjct: 60 QVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYI 119
Query: 258 NSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA----KIRLQSLESSIELVQEKVDN 313
S F+ V+ FE+Y +++R+LL + L+ K R+ ++ E V +
Sbjct: 120 YS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERF---VCS 175
Query: 314 PLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 369
P E + +R V+ N SH I +I++ N T + L KL LVDLAGS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSK 429
E + G + + ++ KSLSALG+V+S+L VPY +S +T++L DSLG + +
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 430 TLMIVNICPNAANMSETLSSLNFSSRARS 458
T +++ P++ N SET S+L F RA++
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKT 324
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 183/346 (52%), Gaps = 20/346 (5%)
Query: 131 EKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVV---EFTDDCTIRVNTGDDTISNP--K 185
E+K L N ++ +GNI+VFCR RP E E + + D+ T+ + + D + +
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 102
Query: 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGL 245
+ F FD+V+ P Q+++F V P +QSALDGYN+ IFAYGQ+ SGKT+TM+G G+
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGV 162
Query: 246 YARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI- 304
R + LFD + T E+YNE L +LL + ++ ++ I
Sbjct: 163 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 222
Query: 305 --ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGEN 356
+ +E V +P ++ +A +R GN+ S + SH + + + + E
Sbjct: 223 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLELIGRHAEKQEI 280
Query: 357 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSML 416
++LVDLAGSE + R+T+ ++ +SLS L +V+ +L ++D +PY NS L
Sbjct: 281 SVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKL 336
Query: 417 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 462
T +L SLG +SKTLM +N+ P E++ SL F++ S ++
Sbjct: 337 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 382
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 188/352 (53%), Gaps = 22/352 (6%)
Query: 131 EKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVV---EFTDDCTIRVNTGDDTISNP--K 185
E+K L N ++ + NI+VFCR RP E E + + D+ T+ + + D + +
Sbjct: 46 ERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 105
Query: 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGL 245
+ F FD+V+ P Q+++F V P +QSALDGYN+ IFAYGQT SGKT+TM+G G+
Sbjct: 106 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGV 165
Query: 246 YARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL-QSLESSI 304
R + LFD + T E+YNE L +LL + +IR+ ++ ++ I
Sbjct: 166 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EIRMAKNNKNDI 224
Query: 305 ---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGE 355
+ +E V +P ++ +A +R GN+ S + SH + + + + E
Sbjct: 225 YVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLELIGRHAEKQE 282
Query: 356 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 415
++LVDLAGSE + R+T+ ++ +SLS L +V+ +L ++D +PY NS
Sbjct: 283 ISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSK 338
Query: 416 LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 467
LT +L SLG +SKTLM +N+ P E++ SL F++ S ++ R+
Sbjct: 339 LTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 390
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 191/354 (53%), Gaps = 38/354 (10%)
Query: 140 LTAKGNIKVFCRTRPLF----EDEGPSVVEFTDDC----TIRVNTGDDTISNPKKDFEFD 191
+ +GNI+V+CR RP +D ++E ++ ++ +N + I + +F+FD
Sbjct: 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILS--YNFQFD 58
Query: 192 RVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFE 251
++ P E+F +++ VQS+LDGYNV IFAYGQT SGKT+TM + G+
Sbjct: 59 MIFEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD--GMIPMTLS 116
Query: 252 ELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP--QTGNGLAKIRLQSLESSIELVQE 309
+F + + + E+YNE + +LL ++ + + +I L S + I E
Sbjct: 117 HIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEI-LDSQKHDIRHDHE 175
Query: 310 K------------------VDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNL 351
K VD L+ + ++S +R N+ S + SH + M+HI NL
Sbjct: 176 KQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERS--SRSHSVFMVHINGRNL 233
Query: 352 ITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDI 408
TGE KL+LVDLAGSE + + +GER+ + ++ KSLS LGDV+ +L + K
Sbjct: 234 HTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRY 293
Query: 409 VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 462
+P+ NS LT +L SL SKTLM VNI P+ ++SETL+SL F+S+ ST ++
Sbjct: 294 IPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 187/351 (53%), Gaps = 41/351 (11%)
Query: 143 KGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------ISNPKK--DFEF 190
+GNI+V+CR RP ++ +E +D I VN DD I N + +F+F
Sbjct: 2 RGNIRVYCRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKF 56
Query: 191 DRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCF 250
D+++ ++F +V VQS+LDGYNV IFAYGQT SGKT TM G+
Sbjct: 57 DKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTI 114
Query: 251 EELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KIR------ 296
+F+ N T + E+YNE + +LL N GL +IR
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 297 --LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLIT 353
+ +S +L +E V+ L+ + L+S + N+ S + SH I +IH+ +N T
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SASHSIFIIHLSGSNAKT 232
Query: 354 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SRKDIVP 410
G + Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L S K +P
Sbjct: 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 411 YENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 461
+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 187/351 (53%), Gaps = 41/351 (11%)
Query: 143 KGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------ISNPKK--DFEF 190
+GNI+V+CR RP ++ +E +D I VN DD I N + +F+F
Sbjct: 2 RGNIRVYCRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKF 56
Query: 191 DRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCF 250
D+++ ++F +V VQS+LDGYNV IFAYGQT SGKT TM G+
Sbjct: 57 DKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTI 114
Query: 251 EELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KIR------ 296
+F+ N T + E+YNE + +LL N GL +IR
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 297 --LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLIT 353
+ +S +L +E V+ L+ + L+S + N+ S + SH I +IH+ +N T
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHLSGSNAKT 232
Query: 354 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SRKDIVP 410
G + Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L S K +P
Sbjct: 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 411 YENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 461
+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 184/358 (51%), Gaps = 38/358 (10%)
Query: 132 KKRLFNDLLTAKGNIKVFCRTRPLFEDEGPS-----VVEFTDDCT---IRVNTGDDTISN 183
++ L N+L +GNI+V+CR RP E + V F DD + +N G+ +
Sbjct: 16 RRALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVI- 74
Query: 184 PKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR 243
F+FD+++ E+F +V +QS+LDGYNV IFAYGQT SGKT+TM
Sbjct: 75 ---PFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD-- 129
Query: 244 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL----PQTGNG-------- 291
G+ +F + + + E+YNE + +LL P N
Sbjct: 130 GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKH 189
Query: 292 -------LAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMI 344
L + ++ + + ++ VD L+ + L+S + N+ S + SH I +I
Sbjct: 190 EIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHS--SRSHSIFII 247
Query: 345 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 404
H+ N TGE L+LVDLAGSE L + GER+ + + KSLS LGDV+ +L S
Sbjct: 248 HLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNS 307
Query: 405 ---RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 459
+K +P+ NS LT +L SL SSKTLM VNI P A +++ET++SL F+S+ +T
Sbjct: 308 PDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNT 365
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 186/350 (53%), Gaps = 41/350 (11%)
Query: 144 GNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------ISNPKK--DFEFD 191
GNI+V+CR RP ++ +E +D I VN DD I N + +F+FD
Sbjct: 2 GNIRVYCRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFD 56
Query: 192 RVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFE 251
+++ ++F +V VQS+LDGYNV IFAYGQT SGKT TM G+
Sbjct: 57 KIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTIS 114
Query: 252 ELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KIR------- 296
+F+ N T + E+YNE + +LL N GL +IR
Sbjct: 115 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 174
Query: 297 -LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITG 354
+ +S +L +E V+ L+ + L+S + N+ S + SH I +IH+ +N TG
Sbjct: 175 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHLSGSNAKTG 232
Query: 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SRKDIVPY 411
+ Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L S K +P+
Sbjct: 233 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPF 292
Query: 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 461
NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 293 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 202/369 (54%), Gaps = 37/369 (10%)
Query: 140 LTAKGNIKVFCRTRPLFEDEGPS----VVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYG 195
+ A+ +IKV CR RPL + E + VV+F + N ++ IS K + FD+V+
Sbjct: 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPN------NVEENCISIAGKVYLFDKVFK 60
Query: 196 PHVGQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFE 251
P+ Q +++++ + V L GYN +IFAYGQT SGKTHTMEG D +G+ R
Sbjct: 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVN 120
Query: 252 ELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA----KIRLQSLESSIELV 307
++F+ + F+ V+ +E+Y +++R+LL + L+ K R+ ++ + E
Sbjct: 121 DIFNHIYA-MEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERF 179
Query: 308 QEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENLYSKLSL 363
V +P + +V++ +R V+ N SH + +I++ NL + L KL L
Sbjct: 180 ---VSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYL 236
Query: 364 VDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT-SRKDIVPYENSMLTKVLAD 422
VDLAGSE + G + + ++ KSLSALG+V+S+L K +PY +S LT++L +
Sbjct: 237 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQE 296
Query: 423 SLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST--VLSLGNRDTIKKWRDIANDAR 480
SLG +++T +++ P + N SET S+L+F RA++ V+ + T ++W
Sbjct: 297 SLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEW-------- 348
Query: 481 KELYEREKE 489
K YE+EKE
Sbjct: 349 KRRYEKEKE 357
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 125/351 (35%), Positives = 186/351 (52%), Gaps = 41/351 (11%)
Query: 143 KGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------ISNPKK--DFEF 190
+GNI+V+CR RP ++ +E +D I VN DD I N + +F+F
Sbjct: 2 RGNIRVYCRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKF 56
Query: 191 DRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCF 250
D+++ ++F +V VQS+LDGYNV IFAYGQT SGKT TM G+
Sbjct: 57 DKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTI 114
Query: 251 EELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KIR------ 296
+F+ N T + E+YNE + +LL N GL +IR
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 297 --LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLIT 353
+ +S +L +E V+ L+ + L+S + N+ S + SH I +IH+ +N T
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHLSGSNAKT 232
Query: 354 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SRKDIVP 410
G + Y L+LVDLAGS + G+R+ + ++ KSLS LGDV+ +L S K +P
Sbjct: 233 GAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 411 YENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 461
+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 181/345 (52%), Gaps = 53/345 (15%)
Query: 145 NIKVFCRTRPL----FEDEGPSVVEFT--DDCTIRVNTGDDTISNPKKDFEFDRVYGPHV 198
+IKV R RP E G +V F D CT+ D+ + F FDRV+
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV------DS-KEAQGSFTFDRVFDMSC 59
Query: 199 GQAELFS-DVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD----RGLYARCFEEL 253
Q+++F ++P V L+GYN ++FAYGQT +GK++TM G+S D RG+ R E++
Sbjct: 60 KQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQI 119
Query: 254 FDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGN--------------GLAKIRLQ 298
F S + A + V+ E+Y E++R+LL PQ N GL +I +
Sbjct: 120 F-TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVS 178
Query: 299 SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITG 354
S++ E +V++ +R + N SH I +I I N+ TG
Sbjct: 179 SVQ--------------EVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETG 224
Query: 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDI-VPYEN 413
+L LVDLAGSE + SG+ + + + KSLSALG V+++LT K VPY +
Sbjct: 225 SAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRD 284
Query: 414 SMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
S LT++L +SLG +S+T +I+N P++ N +ETLS+L F RA+S
Sbjct: 285 SKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKS 329
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 185/341 (54%), Gaps = 39/341 (11%)
Query: 146 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK-------KDFEFDRVYGPHV 198
++V R RP+ E + + D +++ G ++ NPK K F FD VY +
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVDVKL--GQVSVKNPKGTAHEMPKTFTFDAVYDWNA 80
Query: 199 GQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELF 254
Q EL+ + +P V S L G+N +IFAYGQT +GKT+TMEG D RG+ F+ +F
Sbjct: 81 KQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIF 140
Query: 255 DLSNSDTTATARFNFAVTVFELYNEQLRELL-------------PQTGNGLAKIRLQSLE 301
++ + ++ + E+Y E++R+LL P TG + ++ L
Sbjct: 141 --THISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTG-----VYVKDLS 193
Query: 302 SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNL-ITGEN--LY 358
S + +++++ + +S + N+ S + SH I +I I + + + GEN
Sbjct: 194 SFVTKSVKEIEHVMNVGNQNRSVGATNMNEHS--SRSHAIFVITIECSEVGLDGENHIRV 251
Query: 359 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDI-VPYENSMLT 417
KL+LVDLAGSE GER+ + + SLSALG+V+S+L K +PY +S LT
Sbjct: 252 GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLT 311
Query: 418 KVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
++L DSLG ++KT+M+ N+ P + N+ ETL++L +++RA++
Sbjct: 312 RLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKN 352
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 182/344 (52%), Gaps = 37/344 (10%)
Query: 145 NIKVFCRTRPLFEDE-GPSVVEFTDDCTIR-VNTGDDTISNPKKDFEFDRVYGPHVGQAE 202
NI+V+ R RPL E E D R V T S K F FDR +GP Q +
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCD 83
Query: 203 LFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS-----------HDRGLYARCF 250
++S V P ++ L+GYN ++FAYGQT +GKTHTM G+ D G+ R
Sbjct: 84 VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143
Query: 251 EELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL--QSLESSIELV 307
LFD L + T R ++ ELYNE+L +LL + + KIR+ S + ++
Sbjct: 144 SHLFDELRMMEVEYTMRISY----LELYNEELCDLL--STDDTTKIRIFDDSTKKGSVII 197
Query: 308 QEKVDNPL----EFSKVLKSAFQSRGNDVSKFNV----SHLI--IMIHIYYNNLITGENL 357
Q + P+ + K+L+ + R + N SH + I++HI N I GE++
Sbjct: 198 QGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENG-IEGEDM 256
Query: 358 Y--SKLSLVDLAGSEGLI-AEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENS 414
KL+LVDLAGSE + A ++ G R+ + +++ +SL LG V+++L R VPY S
Sbjct: 257 LKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRES 316
Query: 415 MLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
LT++L +SLG +KT +I I P ++ ETLS+L ++ RA++
Sbjct: 317 KLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKN 360
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 173/339 (51%), Gaps = 36/339 (10%)
Query: 145 NIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTG----DDTISNPKK---DFEFDRV 193
NIKV R RPL E +++ D+ + +V + + + KK F FD V
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRM-DEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV 63
Query: 194 YGPHVGQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEE 252
Y +F + +P + + L+G+N +IFAYGQT +GKT TM G+ + G F+
Sbjct: 64 YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKH 123
Query: 253 LFDLSNSDTTATARFNFAV--TVFELYNEQLREL------LPQTGNGLAKIRLQSLESSI 304
LFD NS +++ NF V + ELYNE++R+L LP + I + L
Sbjct: 124 LFDAINS---SSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLS--- 177
Query: 305 ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENL--Y 358
+V E S ++ F +R ++ N SH I M+ I + +I + +
Sbjct: 178 ---MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRV 234
Query: 359 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTK 418
KL+LVDLAGSE +GE + + + SLSALG V+S L +PY +S LT+
Sbjct: 235 GKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTR 294
Query: 419 VLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
+L DSLG +SKTLM NI P + N ET+S+L ++ RA+
Sbjct: 295 LLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAK 333
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 114/348 (32%), Positives = 173/348 (49%), Gaps = 40/348 (11%)
Query: 143 KGNIKVFCRTR---------------PLFEDEGPSVV--EFTDDCTIRVNTGDDTISNPK 185
KGNI+VFCR R + + E P + E + I N ++ SN +
Sbjct: 373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNI-NNNFSNLR 431
Query: 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGL 245
F FD+++ +F ++ +Q +LDG NV +FAYGQT SGKT TM S G+
Sbjct: 432 --FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGM 487
Query: 246 YA----RCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-----PQTGNGLAKIR 296
+ F ++ +L + T R F E+YNE + +LL P T +
Sbjct: 488 IPLSLKKIFNDIEELKEKGWSYTVRGKF----IEIYNEAIVDLLNPKIDPNTKYEIKHDD 543
Query: 297 LQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLI 352
+ + + + +P + +L A + R +K N SH I +I + N +
Sbjct: 544 IAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL 603
Query: 353 TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDI-VPY 411
T E+ Y L+L+DLAGSE L G+R+ + + KSLS LGDV+ SL + VPY
Sbjct: 604 TKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPY 663
Query: 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 459
NS LT +L SLG +SKTLM VNI P +++ET++SL F+++ +T
Sbjct: 664 RNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNT 711
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 175/357 (49%), Gaps = 56/357 (15%)
Query: 146 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNP-------------KKDFEFDR 192
+KV R RP+ E + C + V+ + I NP K F +D
Sbjct: 3 VKVAVRIRPMNRRE----TDLHTKCVVDVD-ANKVILNPVNTNLSKGDARGQPKVFAYDH 57
Query: 193 VYGP--------HVGQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR 243
+ + GQ +F + + +Q+A DGYN IFAYGQT SGK++TM G++
Sbjct: 58 CFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQP 117
Query: 244 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-------------- 289
GL R LF+ + + F V+ E+YNE++R+LL G
Sbjct: 118 GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLG 177
Query: 290 ---NGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 346
+GL+K+ + S + IE + + + + + SR + V K ++H + +
Sbjct: 178 PYVDGLSKLAVTSYK-DIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVK- 235
Query: 347 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 403
+ +GE + KLSLVDLAGSE +G+R+ + ++ KSL+ LG V+S+L
Sbjct: 236 ---SGTSGEKV-GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQS 291
Query: 404 ---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
++ VPY +S+LT +L DSLG +SKT M+ + P A N ETLS+L ++ RA+
Sbjct: 292 AGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 173/347 (49%), Gaps = 39/347 (11%)
Query: 145 NIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRVYGPHVG 199
NI+V R RP E + +C + V TG + +K + FD V+G
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 200 QAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-----------GLYA 247
Q +++ S V P + + GYN +IFAYGQT +GKT TMEG G+
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 248 RCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS--- 303
R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 129 RTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDDPRNK 182
Query: 304 ----IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-NLIT 353
I+ ++E V N E ++L+ R + N SH + + I+ I
Sbjct: 183 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 242
Query: 354 GENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 411
GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R VPY
Sbjct: 243 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 302
Query: 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 303 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 349
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 173/347 (49%), Gaps = 39/347 (11%)
Query: 145 NIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRVYGPHVG 199
NI+V R RP E + +C + V TG + +K + FD V+G
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 200 QAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-----------GLYA 247
Q +++ S V P + + GYN +IFAYGQT +GKT TMEG G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 248 RCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS--- 303
R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 138 RTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDDPRNK 191
Query: 304 ----IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-NLIT 353
I+ ++E V N E ++L+ R + N SH + + I+ I
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 354 GENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 411
GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R VPY
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 173/347 (49%), Gaps = 39/347 (11%)
Query: 145 NIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRVYGPHVG 199
NI+V R RP E + +C + V TG + +K + FD V+G
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 200 QAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-----------GLYA 247
Q +++ S V P + + GYN +IFAYGQT +GKT TMEG G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 248 RCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS--- 303
R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 138 RTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDDPRNK 191
Query: 304 ----IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-NLIT 353
I+ ++E V N E ++L+ R + N SH + + I+ I
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 354 GENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 411
GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R VPY
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 173/347 (49%), Gaps = 39/347 (11%)
Query: 145 NIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRVYGPHVG 199
NI+V R RP E + +C + V TG + +K + FD V+G
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 200 QAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-----------GLYA 247
Q +++ S V P + + GYN +IFAYGQT +GKT TMEG G+
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 248 RCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS--- 303
R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 137 RTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDDPRNK 190
Query: 304 ----IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-NLIT 353
I+ ++E V N E ++L+ R + N SH + + I+ I
Sbjct: 191 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 250
Query: 354 GENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 411
GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R VPY
Sbjct: 251 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 310
Query: 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 311 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 357
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 173/347 (49%), Gaps = 39/347 (11%)
Query: 145 NIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRVYGPHVG 199
NI+V R RP E + +C + V TG + +K + FD V+G
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 200 QAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-----------GLYA 247
Q +++ S V P + + GYN +IFAYGQT +GKT TMEG G+
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 248 RCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS--- 303
R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 140 RTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDDPRNK 193
Query: 304 ----IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-NLIT 353
I+ ++E V N E ++L+ R + N SH + + I+ I
Sbjct: 194 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 253
Query: 354 GENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 411
GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R VPY
Sbjct: 254 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 313
Query: 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 314 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 360
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 173/347 (49%), Gaps = 39/347 (11%)
Query: 145 NIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRVYGPHVG 199
NI+V R RP E + +C + V TG + +K + FD V+G
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 200 QAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-----------GLYA 247
Q +++ S V P + + GYN +IFAYGQT +GKT TMEG G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 248 RCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS--- 303
R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 138 RTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDDPRNK 191
Query: 304 ----IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-NLIT 353
I+ ++E V N E ++L+ R + N SH + + I+ I
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 354 GENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 411
GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R VPY
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 142 bits (359), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 173/347 (49%), Gaps = 39/347 (11%)
Query: 145 NIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRVYGPHVG 199
NI+V R RP E + +C + V TG + +K + FD V+G
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 200 QAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-----------GLYA 247
Q +++ S V P + + GYN +IFAYGQT +GKT TMEG G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 248 RCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS--- 303
R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 138 RTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDDPRNK 191
Query: 304 ----IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-NLIT 353
I+ ++E V N E ++L+ R + N SH + + I+ I
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 354 GENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 411
GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R VPY
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 176/348 (50%), Gaps = 41/348 (11%)
Query: 145 NIKVFCRTRPLFEDE----GPSVVEFTDDC--TIRVNTGDDTISNPKKDFEFDRVYGPHV 198
NI+V R RP E S+VE +D + V TG + +K + FD V+G
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVE-SDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 199 GQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-----------GLY 246
Q +++ S V P + + GYN +IFAYGQT +GKT TMEG G+
Sbjct: 77 KQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGII 136
Query: 247 ARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS-- 303
R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 137 PRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDDPRN 190
Query: 304 -----IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-NLI 352
I+ ++E V N E ++L+ R + N SH + + I+ I
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 353 TGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVP 410
GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R VP
Sbjct: 251 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVP 310
Query: 411 YENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
Y S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 311 YRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 173/347 (49%), Gaps = 39/347 (11%)
Query: 145 NIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRVYGPHVG 199
NI+V R RP E + +C + V TG + +K + FD V+G
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 200 QAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-----------GLYA 247
Q +++ S V P + + GYN +IFAYGQT +GKT TMEG G+
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 248 RCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS--- 303
R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 123 RTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDDPRNK 176
Query: 304 ----IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-NLIT 353
I+ ++E V N E ++L+ R + N SH + + I+ I
Sbjct: 177 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 236
Query: 354 GENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 411
GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R VPY
Sbjct: 237 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 296
Query: 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 297 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 343
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 174/357 (48%), Gaps = 47/357 (13%)
Query: 142 AKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK------KDFEFDRVYG 195
A ++KV R RP E + C I+++ TI NPK K F FD Y
Sbjct: 2 AGASVKVAVRVRPFNSRE----MSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYW 57
Query: 196 PHVG--------QAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH--DRG 244
H Q +++ D+ + +Q A +GYNV IFAYGQT +GK++TM G +G
Sbjct: 58 SHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQG 117
Query: 245 LYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI 304
+ + E+LF N T ++ V+ E+Y E++R+LL G ++R L
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY 177
Query: 305 --ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNNLI 352
+L + V + + ++ S ++R + N SH + I H N+
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNIT 237
Query: 353 TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--------- 403
T + SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 238 TEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKN 295
Query: 404 ---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 296 KKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 174/357 (48%), Gaps = 47/357 (13%)
Query: 142 AKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK------KDFEFDRVYG 195
A ++KV R RP E + C I+++ TI NPK K F FD Y
Sbjct: 2 AGASVKVAVRVRPFNSRE----MSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYW 57
Query: 196 PHVG--------QAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH--DRG 244
H Q +++ D+ + +Q A +GYNV IFAYGQT +GK++TM G +G
Sbjct: 58 SHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQG 117
Query: 245 LYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI 304
+ + E+LF N T ++ V+ E+Y E++R+LL G ++R L
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY 177
Query: 305 --ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNNLI 352
+L + V + + ++ S ++R + N SH + I H N+
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNIT 237
Query: 353 TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--------- 403
T + SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 238 TEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKN 295
Query: 404 ---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 296 KKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 172/353 (48%), Gaps = 47/353 (13%)
Query: 146 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK------KDFEFDRVYGPHVG 199
+KV R RP E + C I+++ TI NPK K F FD Y H
Sbjct: 22 VKVAVRVRPFNSRE----MSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 77
Query: 200 --------QAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH--DRGLYAR 248
Q +++ D+ + +Q A +GYNV IFAYGQT +GK++TM G +G+ +
Sbjct: 78 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 137
Query: 249 CFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI--EL 306
E+LF N T ++ V+ E+Y E++R+LL G ++R L +L
Sbjct: 138 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 197
Query: 307 VQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNNLITGEN 356
+ V + + ++ S ++R + N SH + I H N+ T +
Sbjct: 198 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK- 256
Query: 357 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------------S 404
SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 257 -VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 315
Query: 405 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 316 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 368
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 173/357 (48%), Gaps = 47/357 (13%)
Query: 142 AKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK------KDFEFDRVYG 195
A ++KV R RP E + C I+++ TI NPK K F FD Y
Sbjct: 2 AGASVKVAVRVRPFNSRE----MSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYW 57
Query: 196 PHVG--------QAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH--DRG 244
H Q +++ D+ + +Q A +GYNV IFAYGQT +GK++TM G +G
Sbjct: 58 SHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQG 117
Query: 245 LYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI 304
+ + E+LF N T ++ V+ E+Y E++R+LL G ++R L
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY 177
Query: 305 --ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNNLI 352
+L + V + + ++ S + R + N SH + I H N+
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNIT 237
Query: 353 TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--------- 403
T + SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 238 TEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKN 295
Query: 404 ---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 296 KKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 186/365 (50%), Gaps = 63/365 (17%)
Query: 146 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK-------KDFEFDRVYGPHV 198
+KV R RPL E + E T+ V G T+ NP+ K F FD VY
Sbjct: 23 LKVVARCRPLSRKEEAAGHE--QILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASS 80
Query: 199 GQAELFSD-VQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGS---SHDRGLYARCFEELF 254
QA+L+ + V+P + S L G+N ++FAYGQT +GKT+TM+G+ RG+ FE +F
Sbjct: 81 KQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIF 140
Query: 255 DLSNSDTTATARFNFAVTVFELYNEQLRELL-------------PQTGNGLAKIRLQSLE 301
++ + ++ + E+Y E++R+LL P+TG + ++ L
Sbjct: 141 --THISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETG-----VYIKDLS 193
Query: 302 SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLIT-GEN--LY 358
S + +++++ + ++ + N+VS + SH I +I + + + G++
Sbjct: 194 SFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVS--SRSHAIFIITVECSERGSDGQDHIRV 251
Query: 359 SKLSLVDLAGSE--GLIAEDDSG----------------------ERITDVLHVMKSLSA 394
KL+LVDLAGSE + +G ER + + SLSA
Sbjct: 252 GKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSA 311
Query: 395 LGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFS 453
LG+V+++L +R +PY +S LT++L DSLG ++KT+M+ + P + + E+LS+L F+
Sbjct: 312 LGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFA 371
Query: 454 SRARS 458
+RA++
Sbjct: 372 NRAKN 376
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 176/341 (51%), Gaps = 38/341 (11%)
Query: 146 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK-KDFEFDRVYGPHVGQAELF 204
++V R RPL E ++ C ++V G ++ + + F F V GQ ++
Sbjct: 13 VRVALRVRPLLPKE---LLHGHQSC-LQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVY 68
Query: 205 -SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLS 257
+ VQP +++ +G+N ++FAYGQT SGKT+TM +S ++G+ R E F L
Sbjct: 69 QACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLI 128
Query: 258 NSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLE-SSIELVQEK---VDN 313
+ + + V+ E+Y E+ R+LL + G I+L+ E ++ L K V+
Sbjct: 129 DENDLLDCLVH--VSYLEVYKEEFRDLL-EVGTASRDIQLREDERGNVVLCGVKEVDVEG 185
Query: 314 PLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLI--------------TGENLYS 359
E +L+ +R + N HL H + + G+ L S
Sbjct: 186 LDEVLSLLEMGNAARHTGATHLN--HLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVS 243
Query: 360 KLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDIVPYENSML 416
K VDLAGSE ++ +GER+ + + + SL ALG+V+S+L R +PY +S +
Sbjct: 244 KFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKI 303
Query: 417 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
T++L DSLG ++KT+MI + P++++ ETL++LN++SRA+
Sbjct: 304 TRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 15/328 (4%)
Query: 146 IKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQA 201
++V R RP + P V D C++ + + K ++FD YG Q
Sbjct: 23 VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLK--YQFDAFYGERSTQQ 80
Query: 202 ELFS-DVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD 260
++++ VQP ++ L+G N S+ AYG T +GKTHTM GS G+ R +L L+ +
Sbjct: 81 DIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREE 140
Query: 261 TTATARFNFAVTV--FELYNEQLRELL-PQTGNGLAKIRLQSLESSIELVQEKVDNPLEF 317
+ +VT+ E+Y E++ +LL P +G+ + + + L Q+ + + +F
Sbjct: 141 GAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADF 200
Query: 318 SKVLKSAFQSRGNDVSKFNV----SHLIIMIHI-YYNNLITGENLYSKLSLVDLAGSEGL 372
+ A ++R ++ N SH ++++ + L KL L+DLAGSE
Sbjct: 201 ERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDN 260
Query: 373 IAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLM 432
+ G R+ + + SL LG V+ +L VPY +S LT++L DSLG S+ +++
Sbjct: 261 RRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSIL 320
Query: 433 IVNICPNAANMSETLSSLNFSSRARSTV 460
I NI P +T+S+LNF++R++ +
Sbjct: 321 IANIAPERRFYLDTVSALNFAARSKEVI 348
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 157/319 (49%), Gaps = 48/319 (15%)
Query: 185 KKDFEFDRVYGPHVGQAELFSDVQ--------PFVQSALDGYNVSIFAYGQTHSGKTHTM 236
+K F FD+ + H + E ++ + F+ +GY+ IFAYGQT SGK++TM
Sbjct: 95 EKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154
Query: 237 EGSSHDRGLYARCFEELFD--LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 294
G+ GL R E+LF S D T +N V+ FE+YNE +R+LL
Sbjct: 155 MGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPP 214
Query: 295 IRLQSLESSIE--LVQEKVDNP----------LEFSKVLKSAFQSRGNDVSKFNVSHLII 342
L+ ES E V++ + P + ++ ++ ND S + + I
Sbjct: 215 YYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274
Query: 343 MIHIYYNNLITGENL--YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLS 400
M+ +++L T + S++ LVDLAGSE + + +G+R+ + ++ KSL+ LG V++
Sbjct: 275 MLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIA 334
Query: 401 SLTSRK----------------------DIVPYENSMLTKVLADSLGESSKTLMIVNICP 438
+L K +VPY +S+LT +L DSLG +SKT MI I P
Sbjct: 335 ALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP 394
Query: 439 NAANMSETLSSLNFSSRAR 457
+ ETLS+L ++ +A+
Sbjct: 395 T--DYDETLSTLRYADQAK 411
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 174/341 (51%), Gaps = 38/341 (11%)
Query: 146 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK-KDFEFDRVYGPHVGQAELF 204
++V R RPL E ++ C ++V G ++ + + F F V GQ ++
Sbjct: 13 VRVALRVRPLLPKE---LLHGHQSC-LQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVY 68
Query: 205 -SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLS 257
+ VQP +++ +G+N ++FAYGQT SGKT+TM +S ++G+ R E F L
Sbjct: 69 QACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLI 128
Query: 258 NSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLE-SSIELVQEK---VDN 313
+ + + V+ E+Y E+ R+LL + G I+L+ E ++ L K V+
Sbjct: 129 DENDLLDCLVH--VSYLEVYKEEFRDLL-EVGTASRDIQLREDERGNVVLCGVKEVDVEG 185
Query: 314 PLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLI--------------TGENLYS 359
E +L+ +R + N HL H + + G+ L S
Sbjct: 186 LDEVLSLLEMGNAARHTGATHLN--HLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVS 243
Query: 360 KLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDIVPYENSML 416
K VDLAGSE ++ +GE + + + SL ALG+V+S+L R +PY +S +
Sbjct: 244 KFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKI 303
Query: 417 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
T++L DSLG ++KT+MI + P++++ ETL++LN++SRA+
Sbjct: 304 TRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 155/303 (51%), Gaps = 30/303 (9%)
Query: 176 TGDDTISNPKKD--FEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGK 232
T + I KD F FD V+ Q+E+F +P ++S L+GYN ++ AYG T +GK
Sbjct: 60 TNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGK 119
Query: 233 THTMEGSSHDRG--------LYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLREL 284
THTM GS+ + G LY +C +E+ + T AV+ E+YNEQ+R+L
Sbjct: 120 THTMLGSADEPGVMYLTMLHLY-KCMDEIKEEKICST--------AVSYLEVYNEQIRDL 170
Query: 285 LPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHL 340
L +G + Q L + + E +L + ++R + N SH
Sbjct: 171 LVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHA 230
Query: 341 IIMIHIYYNNLITGENL---YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGD 397
+ I++ + N +K+SL+DLAGSE G R + ++ +SL ALG+
Sbjct: 231 VFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGN 290
Query: 398 VLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSS 454
V+++L K +PY NS LT++L DSLG + +T+MI + P++ +T ++L +++
Sbjct: 291 VINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYAN 350
Query: 455 RAR 457
RA+
Sbjct: 351 RAK 353
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 161/341 (47%), Gaps = 26/341 (7%)
Query: 140 LTAKGNIKVFCRTRPLFEDEGPSVVEFTDDC-TIRVNTGDD----TISNPKKDFEFDRVY 194
+ + + F R +P +D ++ + DD +I ++ D ++N + D+ F
Sbjct: 20 MGTRKKVHAFVRVKPT-DDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDG 78
Query: 195 GPHVGQAELFSDV--QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARC 249
H +L + + V ALDGYN +I YGQT +GKT+TM G++ + RG+ R
Sbjct: 79 VLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRA 138
Query: 250 FEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL---PQTGNGLAKIRLQSLESSIEL 306
+++F + + T V+ E+YNE L +LL P G + + + + +
Sbjct: 139 LQQVFRMI--EERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFI 196
Query: 307 VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV-------SHLIIMIHIYYNNLITGENLY- 358
V + F+ N + + SH I I++ ++ E Y
Sbjct: 197 KGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYI 256
Query: 359 -SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSML 416
SK++LVDLAGSE L G+ + + ++ KSLS L + +L +K D +P+ L
Sbjct: 257 TSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKL 316
Query: 417 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
T L DSLG + +++ NI AA + ETLSSL F+SR +
Sbjct: 317 THALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 157/335 (46%), Gaps = 31/335 (9%)
Query: 143 KGNIKVFCRTRPLFE-----DEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH 197
+G + V R RPL E V TD+ I G K F FDRV+ +
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGS-------KSFNFDRVFHGN 55
Query: 198 VGQAELFSDVQ-PFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDL 256
++ ++ P + SA+ GYN +IFAYGQT SGKT+TM GS G+ R ++F
Sbjct: 56 ETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQ- 114
Query: 257 SNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI---ELVQEKVDN 313
F V+ E+YNE + +LL T I + + ++ +L +E V
Sbjct: 115 -KIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYT 173
Query: 314 PLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-----NLITGENLYSKLSLV 364
K + +SR +K N SH I + + + G S L+LV
Sbjct: 174 SEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLV 233
Query: 365 DLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLAD 422
DLAGSE +G R+ + ++ +SL LG V+ L+ + + Y +S LT++L +
Sbjct: 234 DLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQN 293
Query: 423 SLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
SLG ++KT +I I P + ETL++L F+S A+
Sbjct: 294 SLGGNAKTRIICTITP--VSFDETLTALQFASTAK 326
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 142/289 (49%), Gaps = 32/289 (11%)
Query: 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG------SS 240
DF FD V F+ +P VQ+ +G + FAYGQT SGKTHTM G +
Sbjct: 126 DFAFDETASNEV--VYRFT-ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 182
Query: 241 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 300
+G+YA ++F L N VT FE+YN ++ +LL N AK+R+ L
Sbjct: 183 ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL----NKKAKLRV--L 236
Query: 301 ESSIELVQ---------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNL 351
E S + VQ D+ ++ + SA ++ G + N S I L
Sbjct: 237 EDSRQQVQVVGLQEYLVTCADDVIKMIN-MGSACRTSGQTFANSNSSRSHACFQIL---L 292
Query: 352 ITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSLTSRKDIV 409
T L+ K SLVDLAG+E A+ S +R T + + KSL AL + + +L K
Sbjct: 293 RTKGRLHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT 351
Query: 410 PYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
P+ S LT+VL DS +GE+S+T MI I P ++ TL++L ++ R +
Sbjct: 352 PFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 28/245 (11%)
Query: 142 AKGNIKVFCRTRPLFEDE---GPSVV-EFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH 197
A+ +IKV CR RPL E E G + +F + T+ + G K + FDRV P+
Sbjct: 4 AECSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQG--------KPYVFDRVLPPN 55
Query: 198 VGQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEEL 253
Q ++++ + V+ L+GYN +IFAYGQT SGKTHTMEG HD G+ R ++
Sbjct: 56 TTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDI 115
Query: 254 FDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA----KIRLQSLESSIELVQE 309
FD S F+ V+ FE+Y +++R+LL + LA K R+ ++ E
Sbjct: 116 FDHIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERF-- 172
Query: 310 KVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENLYSKLSLVD 365
V +P E V+ +R V+ N SH I +I+I N+ T + L KL LVD
Sbjct: 173 -VSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVD 231
Query: 366 LAGSE 370
LAGSE
Sbjct: 232 LAGSE 236
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 147/289 (50%), Gaps = 32/289 (11%)
Query: 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG------SS 240
DF FD V F+ +P VQ+ +G + FAYGQT SGKTHTM G +
Sbjct: 106 DFAFDETASNEV--VYRFT-ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQN 162
Query: 241 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR-LQS 299
+G+YA ++F L N VT FE+YN +L +LL N AK+R L+
Sbjct: 163 ASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL----NKKAKLRVLED 218
Query: 300 LESSIELV--QEKVDNPLEFSKVLK-----SAFQSRGNDVSKFNVSHLIIMIHIYYNNLI 352
+ +++V QE + N + V+K SA ++ G + N S H + ++
Sbjct: 219 GKQQVQVVGLQEHLVNSAD--DVIKMIDMGSACRTSGQTFANSNSSR----SHACFQIIL 272
Query: 353 TGEN-LYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSLTSRKDIV 409
+ ++ K SLVDLAG+E A+ S +R T + + KSL AL + + +L K
Sbjct: 273 RAKGRMHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT 331
Query: 410 PYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
P+ S LT+VL DS +GE+S+T MI I P ++ TL++L ++ R +
Sbjct: 332 PFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVK 380
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 141/289 (48%), Gaps = 32/289 (11%)
Query: 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG------SS 240
DF FD V F+ +P VQ+ +G + FAYGQT SGKTHTM G +
Sbjct: 54 DFAFDETASNEV--VYRFT-ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 110
Query: 241 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 300
+G+YA ++F L N VT FE+YN ++ +LL + K +L+ L
Sbjct: 111 ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK------KAKLRVL 164
Query: 301 ESSIELVQ---------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNL 351
E S + VQ D+ ++ + SA ++ G + N S I L
Sbjct: 165 EDSRQQVQVVGLQEYLVTCADDVIKMIN-MGSACRTSGQTFANSNSSRSHACFQIL---L 220
Query: 352 ITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSLTSRKDIV 409
T L+ K SLVDLAG+E A+ S +R T + + KSL AL + + +L K
Sbjct: 221 RTKGRLHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT 279
Query: 410 PYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
P+ S LT+VL DS +GE+S+T MI I P ++ TL++L ++ R +
Sbjct: 280 PFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 328
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 168/340 (49%), Gaps = 38/340 (11%)
Query: 146 IKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTG----DDTISNPKKDFEFDRVYGPH 197
IKV R RPL E E ++ ++CT+ ++ D T + +F D+V+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 198 VGQAELFSD-VQPFVQSAL-DGYNVSIFAYGQTHSGKTHTMEGS-----SHDRGLYARCF 250
V ++ + ++P + +G S FAYGQT SGKT+TM GS S G++
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 251 EELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG------NGLAKIRLQSLE--- 301
++F N + F ++ +E+Y +L +LL + NG ++ ++ L+
Sbjct: 122 GDIFTFLNIYDKDNTKGIF-ISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILR 180
Query: 302 --SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYS 359
+ EL+ + +D L + K S+ ++ S+ SH I+ I + I
Sbjct: 181 VLTKEELILKMIDGVL----LRKIGVNSQNDESSR---SHAILNIDL---KDINKNTSLG 230
Query: 360 KLSLVDLAGSE-GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTK 418
K++ +DLAGSE G + + TD ++ +SL AL + + ++ S K+ +P+ +S LTK
Sbjct: 231 KIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTK 290
Query: 419 VLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 458
VL D SK++MI NI P + +TL++L +SSR ++
Sbjct: 291 VLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 139/292 (47%), Gaps = 36/292 (12%)
Query: 188 FEFDRVYGPHVGQAELFS-DVQPFVQSALDGYNVSIFAYGQTHSGKTHTM----EGSSHD 242
F FD + ++ +P V++ + + FAYGQT SGKTHTM G + D
Sbjct: 141 FRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQD 200
Query: 243 --RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 300
+G+YA ++F + T FE+Y+ ++ +LL + K +L+ L
Sbjct: 201 CSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNR------KTKLRVL 254
Query: 301 ESSIELVQ------------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYY 348
E + VQ E V ++ +++ Q+ N S + SH + I +
Sbjct: 255 EDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHS--SRSHAVFQIILRR 312
Query: 349 NNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSLTSRK 406
L+ K SL+DLAG+E A+ S +R T + + KSL AL + + +L K
Sbjct: 313 KG-----KLHGKFSLIDLAGNE-RGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK 366
Query: 407 DIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457
P+ S LT+VL DS +GE+S+T MI I P A+ TL++L +++R +
Sbjct: 367 PHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVK 418
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 148/319 (46%), Gaps = 41/319 (12%)
Query: 161 PSVVEF---TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALD 216
PSVV+F +D ++ V+ + +F FD + + Q E++ + P V L+
Sbjct: 42 PSVVQFPPWSDGKSLIVD---------QNEFHFDHAFPATISQDEMYQALILPLVDKLLE 92
Query: 217 GYNVSIFAYGQTHSGKTHTM------EGSSHDRGLYARCFEELFDLSNSDTTATAR---- 266
G+ + AYGQT +GK+++M E G+ R ++F+ TAR
Sbjct: 93 GFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFE------RVTARQENN 146
Query: 267 ---FNFAVTVFELYNEQLRELLPQTGN-GLAKIRLQSLESSIELVQEKVDNPLEFSKVLK 322
+ E+YNE+ +LL T + + R Q Q + + LE +
Sbjct: 147 KDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNR 206
Query: 323 SAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERI 382
+ N S + SH I+ IH+ + +S++++VDLAGSEG+ G
Sbjct: 207 RVRPTNMN--SNSSRSHAIVTIHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVAR 258
Query: 383 TDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442
+ +++ L ++ V+ S+ + ++PY +S+LT VL SL S + I P+ +
Sbjct: 259 QEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCD 318
Query: 443 MSETLSSLNFSSRARSTVL 461
+SETLS+L F + A++ L
Sbjct: 319 LSETLSTLRFGTSAKAAAL 337
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 146/315 (46%), Gaps = 41/315 (13%)
Query: 161 PSVVEF---TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALD 216
PSVV+F +D ++ V+ + +F FD + + Q E++ + P V L+
Sbjct: 42 PSVVQFPPWSDGKSLIVD---------QNEFHFDHAFPATISQDEMYQALILPLVDKLLE 92
Query: 217 GYNVSIFAYGQTHSGKTHTM------EGSSHDRGLYARCFEELFDLSNSDTTATAR---- 266
G+ + AYGQT +GK+++M E G+ R ++F+ TAR
Sbjct: 93 GFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFE------RVTARQENN 146
Query: 267 ---FNFAVTVFELYNEQLRELLPQTGN-GLAKIRLQSLESSIELVQEKVDNPLEFSKVLK 322
+ E+YNE+ +LL T + + R Q Q + + LE +
Sbjct: 147 KDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNR 206
Query: 323 SAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERI 382
+ N S + SH I+ IH+ + +S++++VDLAGSEG+ G
Sbjct: 207 RVRPTNMN--SNSSRSHAIVTIHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVAR 258
Query: 383 TDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442
+ +++ L ++ V+ S+ + ++PY +S+LT VL SL S + I P+ +
Sbjct: 259 QEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCD 318
Query: 443 MSETLSSLNFSSRAR 457
+SETLS+L F + A+
Sbjct: 319 LSETLSTLRFGTSAK 333
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 390 KSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448
KSLSALG+V+S+L K VPY +S +T++L DSLG + +T +++ P+ N +ET S
Sbjct: 2 KSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKS 61
Query: 449 SLNFSSRARS 458
+L F RA++
Sbjct: 62 TLMFGQRAKT 71
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 387 HVMKSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSE 445
++ KSLSALG+V+S+L K VPY +S +T++L DSL + +T +++ P+ N +E
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 446 TLSSLNFSSRARS 458
T S+L F RA++
Sbjct: 63 TKSTLMFGQRAKT 75
>pdb|2P2U|A Chain A, Crystal Structure Of Putative Host-Nuclease Inhibitor
Protein Gam From Desulfovibrio Vulgaris
pdb|2P2U|B Chain B, Crystal Structure Of Putative Host-Nuclease Inhibitor
Protein Gam From Desulfovibrio Vulgaris
Length = 171
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 578 IKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLE 634
I T+ K+ IE+Q NEA+ +++ R++ +S P+ A L DG+ + A K E
Sbjct: 25 IATIDRKVGEIEAQXNEAIDAAKARASQKSAPLLARRKELE---DGVATFATLNKTE 78
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 209 PFVQSALDGYNVSI----FAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTAT 264
PF AL+ Y +S F YG+ H G + + D L + E++ + D
Sbjct: 8 PFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTYGDAAKV 67
Query: 265 ARFNFAVTVF 274
FN A V+
Sbjct: 68 GIFNNAAQVW 77
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 390 KSLSALGDVLS-SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448
+ L A G +L + +++ +P+ S+ + DS+ + T + I N A +E
Sbjct: 231 RGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAEN-- 288
Query: 449 SLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN 508
+S TV +G+R +K+W + + L ER++ I L+ GL+ L++
Sbjct: 289 --TLASVLDCTVTPMGSR-MLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVG 345
Query: 509 D 509
D
Sbjct: 346 D 346
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 390 KSLSALGDVLS-SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448
+ L A G +L + +++ +P+ S+ + DS+ + T + I N A +E
Sbjct: 232 RGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAEN-- 289
Query: 449 SLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN 508
+S TV +G+R +K+W + + L ER++ I L+ GL+ L++
Sbjct: 290 --TLASVLDCTVTPMGSR-MLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVG 346
Query: 509 D 509
D
Sbjct: 347 D 347
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 390 KSLSALGDVLS-SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448
+ L A G +L + +++ +P+ S+ + DS+ + T + I N A +E
Sbjct: 232 RGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAEN-- 289
Query: 449 SLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN 508
+S TV +G+R +K+W + + L ER++ I L+ GL+ L++
Sbjct: 290 --TLASVLDCTVTPMGSR-MLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVG 346
Query: 509 D 509
D
Sbjct: 347 D 347
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 390 KSLSALGDVLS-SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448
+ L A G +L + +++ +P+ S+ + DS+ + T + I N A +E
Sbjct: 232 RGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAEN-- 289
Query: 449 SLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN 508
+S TV +G+R +K+W + + L ER++ I L+ GL+ L++
Sbjct: 290 --TLASVLDCTVTPMGSR-MLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVG 346
Query: 509 D 509
D
Sbjct: 347 D 347
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 390 KSLSALGDVLS-SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448
+ L A G +L + +++ +P+ S+ + DS+ + T + I N A +E
Sbjct: 232 RGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAEN-- 289
Query: 449 SLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN 508
+S TV +G+R +K+W + + L ER++ I L+ GL+ L++
Sbjct: 290 --TLASVLDCTVTPMGSR-MLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVG 346
Query: 509 D 509
D
Sbjct: 347 D 347
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 390 KSLSALGDVLS-SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448
+ L A G +L + +++ +P+ S+ + DS+ + T + I N A +E
Sbjct: 232 RGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAEN-- 289
Query: 449 SLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN 508
+S TV +G+R +K+W + + L ER++ I L+ GL+ L++
Sbjct: 290 --TLASVLDCTVTPMGSR-MLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVG 346
Query: 509 D 509
D
Sbjct: 347 D 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,028,679
Number of Sequences: 62578
Number of extensions: 1054757
Number of successful extensions: 3204
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2955
Number of HSP's gapped (non-prelim): 109
length of query: 1037
length of database: 14,973,337
effective HSP length: 109
effective length of query: 928
effective length of database: 8,152,335
effective search space: 7565366880
effective search space used: 7565366880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)