Query 001652
Match_columns 1037
No_of_seqs 513 out of 2331
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 1.5E-82 3.2E-87 758.3 34.0 392 65-465 243-646 (670)
2 KOG0243 Kinesin-like protein [ 100.0 5.5E-80 1.2E-84 740.9 44.8 349 141-508 46-424 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 2.3E-78 4.9E-83 702.5 25.5 320 142-462 3-339 (574)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 5.6E-76 1.2E-80 667.0 39.2 353 142-501 5-372 (607)
5 KOG0245 Kinesin-like protein [ 100.0 7.6E-77 1.7E-81 701.0 24.2 346 144-508 4-381 (1221)
6 cd01370 KISc_KIP3_like Kinesin 100.0 5.8E-74 1.3E-78 643.5 30.1 313 145-459 1-338 (338)
7 PLN03188 kinesin-12 family pro 100.0 1.2E-73 2.6E-78 691.2 33.8 353 132-504 82-469 (1320)
8 cd01373 KISc_KLP2_like Kinesin 100.0 8.9E-73 1.9E-77 633.7 30.1 309 144-459 1-337 (337)
9 cd01368 KISc_KIF23_like Kinesi 100.0 5.2E-72 1.1E-76 629.3 30.0 307 144-457 1-345 (345)
10 KOG0242 Kinesin-like protein [ 100.0 3.1E-72 6.8E-77 671.8 28.6 351 144-505 6-369 (675)
11 cd01367 KISc_KIF2_like Kinesin 100.0 1.1E-70 2.5E-75 613.1 29.8 306 144-457 1-322 (322)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3.9E-70 8.4E-75 616.4 31.2 319 144-463 1-353 (356)
13 KOG0241 Kinesin-like protein [ 100.0 2.5E-70 5.5E-75 633.5 28.0 392 143-557 3-427 (1714)
14 cd01376 KISc_KID_like Kinesin 100.0 2.2E-69 4.7E-74 602.0 30.8 305 145-457 1-319 (319)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3E-69 6.4E-74 601.8 31.6 310 144-459 2-325 (325)
16 cd01371 KISc_KIF3 Kinesin moto 100.0 3E-69 6.4E-74 604.2 31.7 314 144-459 1-333 (333)
17 cd01366 KISc_C_terminal Kinesi 100.0 3.9E-69 8.5E-74 601.5 31.8 315 143-461 1-328 (329)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 5.7E-69 1.2E-73 598.8 30.4 306 145-459 1-321 (321)
19 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.8E-68 3.9E-73 601.7 30.7 316 144-463 2-347 (352)
20 cd01375 KISc_KIF9_like Kinesin 100.0 5.4E-68 1.2E-72 594.3 30.2 310 145-457 1-334 (334)
21 cd01372 KISc_KIF4 Kinesin moto 100.0 2.1E-67 4.5E-72 590.3 30.3 307 145-460 2-341 (341)
22 cd00106 KISc Kinesin motor dom 100.0 8.3E-66 1.8E-70 573.3 31.8 312 145-457 1-328 (328)
23 KOG0247 Kinesin-like protein [ 100.0 1.8E-65 3.9E-70 592.8 32.2 322 141-462 28-439 (809)
24 smart00129 KISc Kinesin motor, 100.0 2.2E-64 4.7E-69 564.1 30.7 315 145-463 1-332 (335)
25 PF00225 Kinesin: Kinesin moto 100.0 3.2E-64 6.8E-69 562.2 23.1 309 151-459 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 1.6E-61 3.4E-66 547.3 25.3 316 144-463 208-545 (676)
27 KOG0244 Kinesin-like protein [ 100.0 3.2E-59 7E-64 554.6 13.6 278 184-464 30-322 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 8.1E-56 1.8E-60 525.1 35.1 315 142-466 20-343 (568)
29 cd01363 Motor_domain Myosin an 100.0 3.8E-47 8.3E-52 393.2 16.2 172 203-438 8-186 (186)
30 KOG0239 Kinesin (KAR3 subfamil 100.0 4.8E-32 1E-36 325.1 -7.2 655 175-967 15-670 (670)
31 COG5059 KIP1 Kinesin-like prot 98.8 9.4E-11 2E-15 141.1 -10.1 263 128-403 290-566 (568)
32 PRK11637 AmiB activator; Provi 96.9 0.081 1.8E-06 62.5 21.1 9 821-829 378-386 (428)
33 PRK11637 AmiB activator; Provi 96.7 0.29 6.4E-06 57.9 23.4 7 639-645 244-250 (428)
34 COG1579 Zn-ribbon protein, pos 96.4 0.51 1.1E-05 52.0 21.0 37 626-662 151-187 (239)
35 COG4942 Membrane-bound metallo 96.1 1.7 3.6E-05 51.4 24.9 48 687-734 285-335 (420)
36 PF13851 GAS: Growth-arrest sp 96.0 1.2 2.6E-05 48.0 21.4 158 468-646 28-200 (201)
37 TIGR02169 SMC_prok_A chromosom 96.0 0.52 1.1E-05 61.7 22.5 14 223-236 27-40 (1164)
38 PF09726 Macoilin: Transmembra 95.9 0.96 2.1E-05 56.9 22.7 36 554-589 544-579 (697)
39 PF09726 Macoilin: Transmembra 95.8 1 2.2E-05 56.7 22.7 23 634-656 635-657 (697)
40 COG1579 Zn-ribbon protein, pos 95.8 2.5 5.4E-05 46.7 23.0 35 626-660 140-174 (239)
41 TIGR02169 SMC_prok_A chromosom 95.7 0.82 1.8E-05 59.9 22.5 11 313-323 118-128 (1164)
42 KOG1853 LIS1-interacting prote 95.7 1.4 3E-05 48.5 19.9 31 631-661 150-183 (333)
43 PRK09039 hypothetical protein; 95.6 0.84 1.8E-05 52.9 19.6 83 549-651 117-199 (343)
44 KOG0980 Actin-binding protein 95.4 1.9 4.1E-05 54.5 22.1 81 751-835 645-751 (980)
45 PF10481 CENP-F_N: Cenp-F N-te 95.3 3.7 8E-05 45.9 22.0 31 567-597 100-130 (307)
46 PF07888 CALCOCO1: Calcium bin 95.3 4.9 0.00011 49.1 25.0 38 479-516 155-192 (546)
47 TIGR02168 SMC_prok_B chromosom 95.2 2.1 4.5E-05 56.0 23.4 17 726-742 970-986 (1179)
48 TIGR02168 SMC_prok_B chromosom 95.1 1.8 3.8E-05 56.7 22.6 17 895-912 1089-1105(1179)
49 PF10168 Nup88: Nuclear pore c 95.1 2.7 5.8E-05 53.3 22.8 81 564-657 634-714 (717)
50 PF07888 CALCOCO1: Calcium bin 94.9 4.6 0.0001 49.3 23.2 14 645-658 441-454 (546)
51 PF09755 DUF2046: Uncharacteri 94.8 4.7 0.0001 46.0 21.5 94 551-661 109-204 (310)
52 KOG1029 Endocytic adaptor prot 94.6 3.6 7.9E-05 51.3 21.2 37 625-661 473-509 (1118)
53 PF05667 DUF812: Protein of un 94.6 3.1 6.6E-05 51.7 21.2 34 625-658 485-521 (594)
54 KOG0250 DNA repair protein RAD 94.6 2.4 5.3E-05 54.7 20.6 66 534-599 358-424 (1074)
55 KOG0971 Microtubule-associated 94.4 1.4 3E-05 55.6 17.5 29 491-519 328-356 (1243)
56 PF08317 Spc7: Spc7 kinetochor 94.4 5.1 0.00011 46.0 21.5 44 549-592 217-260 (325)
57 PF12718 Tropomyosin_1: Tropom 94.4 4.8 0.0001 41.1 18.9 30 565-594 111-140 (143)
58 KOG0971 Microtubule-associated 94.3 3.1 6.8E-05 52.6 20.1 22 185-206 55-78 (1243)
59 KOG0996 Structural maintenance 94.3 2 4.2E-05 55.8 19.0 54 545-598 476-529 (1293)
60 PF00038 Filament: Intermediat 94.2 7.7 0.00017 43.8 22.0 26 631-656 265-290 (312)
61 KOG0250 DNA repair protein RAD 94.2 5.8 0.00013 51.5 22.6 20 217-237 61-80 (1074)
62 PHA02562 46 endonuclease subun 94.0 4.4 9.6E-05 49.3 21.0 107 482-595 175-281 (562)
63 PF14662 CCDC155: Coiled-coil 93.9 11 0.00023 40.5 22.7 26 481-506 29-54 (193)
64 KOG0976 Rho/Rac1-interacting s 93.9 3.1 6.8E-05 51.9 18.8 11 933-943 688-698 (1265)
65 COG1196 Smc Chromosome segrega 93.9 4.4 9.5E-05 54.1 22.2 22 773-794 984-1005(1163)
66 PF00308 Bac_DnaA: Bacterial d 93.9 0.029 6.2E-07 60.5 1.8 50 186-237 3-52 (219)
67 PF15254 CCDC14: Coiled-coil d 93.6 6.1 0.00013 49.6 20.7 28 632-659 526-553 (861)
68 COG0556 UvrB Helicase subunit 93.5 0.077 1.7E-06 63.5 4.7 88 186-282 3-101 (663)
69 PRK04863 mukB cell division pr 93.5 8.4 0.00018 52.6 23.7 18 220-237 28-45 (1486)
70 KOG0161 Myosin class II heavy 93.5 5.2 0.00011 55.3 21.7 25 306-330 682-706 (1930)
71 PHA02562 46 endonuclease subun 93.4 3.3 7.1E-05 50.4 18.4 17 220-236 28-44 (562)
72 PF13851 GAS: Growth-arrest sp 93.3 14 0.0003 39.9 21.0 20 488-507 27-46 (201)
73 PRK03918 chromosome segregatio 93.2 18 0.00039 46.6 25.6 15 222-236 26-40 (880)
74 KOG0161 Myosin class II heavy 93.1 7.2 0.00016 54.0 22.2 15 244-258 423-437 (1930)
75 KOG4673 Transcription factor T 93.0 17 0.00037 45.2 22.7 40 727-766 838-878 (961)
76 KOG0963 Transcription factor/C 92.9 30 0.00066 42.8 25.3 35 476-510 237-271 (629)
77 PF14662 CCDC155: Coiled-coil 92.9 15 0.00033 39.4 19.8 36 483-518 10-45 (193)
78 KOG4643 Uncharacterized coiled 92.9 5.8 0.00012 51.0 19.2 20 440-459 250-269 (1195)
79 PF11559 ADIP: Afadin- and alp 92.9 4.7 0.0001 41.1 15.9 43 540-585 107-149 (151)
80 COG1196 Smc Chromosome segrega 92.8 11 0.00023 50.6 23.2 20 214-236 22-41 (1163)
81 PF12718 Tropomyosin_1: Tropom 92.7 13 0.00028 38.1 18.5 57 538-594 77-133 (143)
82 KOG4643 Uncharacterized coiled 92.6 13 0.00027 48.1 21.6 16 644-659 573-588 (1195)
83 PRK09039 hypothetical protein; 92.5 13 0.00027 43.3 20.5 45 551-595 112-156 (343)
84 PF10174 Cast: RIM-binding pro 92.3 19 0.00041 46.2 23.1 118 476-593 289-409 (775)
85 PRK06835 DNA replication prote 92.3 0.42 9.2E-06 54.9 8.2 36 201-237 166-201 (329)
86 PF00038 Filament: Intermediat 92.1 17 0.00037 41.1 20.7 35 57-91 5-39 (312)
87 KOG0977 Nuclear envelope prote 92.1 16 0.00034 44.9 21.1 115 475-589 100-217 (546)
88 COG5185 HEC1 Protein involved 92.0 2.6 5.7E-05 50.0 14.0 155 485-661 268-422 (622)
89 smart00787 Spc7 Spc7 kinetocho 91.7 13 0.00028 42.9 19.1 40 555-594 218-257 (312)
90 KOG0995 Centromere-associated 91.7 20 0.00044 43.9 21.2 29 567-595 299-327 (581)
91 KOG4809 Rab6 GTPase-interactin 91.6 16 0.00035 44.4 20.0 112 481-596 331-448 (654)
92 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.5 16 0.00036 36.6 19.8 34 627-660 97-130 (132)
93 COG4372 Uncharacterized protei 91.4 35 0.00077 40.1 23.1 54 390-455 7-67 (499)
94 PF10168 Nup88: Nuclear pore c 91.3 17 0.00036 46.4 21.2 71 567-653 644-714 (717)
95 KOG0612 Rho-associated, coiled 91.3 14 0.00031 48.6 20.5 27 628-654 667-693 (1317)
96 PF12325 TMF_TATA_bd: TATA ele 91.3 8.9 0.00019 38.3 15.1 40 475-514 17-56 (120)
97 KOG0996 Structural maintenance 91.3 10 0.00022 49.6 19.1 13 224-236 113-125 (1293)
98 KOG2129 Uncharacterized conser 91.2 15 0.00033 43.2 18.8 64 576-648 253-316 (552)
99 PRK03918 chromosome segregatio 91.1 35 0.00075 44.1 24.4 8 986-993 833-840 (880)
100 PF09789 DUF2353: Uncharacteri 91.0 26 0.00057 40.5 20.5 156 482-661 73-229 (319)
101 PRK02224 chromosome segregatio 91.0 29 0.00063 44.9 23.6 15 222-236 26-40 (880)
102 PF08317 Spc7: Spc7 kinetochor 91.0 9.1 0.0002 44.0 17.2 52 541-592 216-267 (325)
103 PRK02224 chromosome segregatio 90.9 27 0.00058 45.2 23.2 20 956-975 783-806 (880)
104 PF06785 UPF0242: Uncharacteri 90.9 29 0.00063 40.1 20.2 29 572-600 197-225 (401)
105 PF12325 TMF_TATA_bd: TATA ele 90.8 10 0.00022 37.9 14.9 100 480-594 15-114 (120)
106 PF05667 DUF812: Protein of un 90.8 15 0.00032 45.9 19.7 30 745-783 553-582 (594)
107 TIGR00606 rad50 rad50. This fa 90.6 16 0.00034 49.7 21.4 28 774-801 1135-1162(1311)
108 PRK04863 mukB cell division pr 90.4 12 0.00026 51.3 19.8 13 414-426 211-223 (1486)
109 KOG2991 Splicing regulator [RN 90.4 14 0.00031 41.1 16.8 68 536-603 238-305 (330)
110 PF06785 UPF0242: Uncharacteri 90.4 19 0.00042 41.4 18.3 103 546-661 125-227 (401)
111 KOG0933 Structural maintenance 90.3 21 0.00045 46.3 20.3 22 198-219 367-388 (1174)
112 TIGR00606 rad50 rad50. This fa 90.3 16 0.00034 49.7 21.0 13 857-869 1079-1091(1311)
113 KOG0933 Structural maintenance 90.2 23 0.0005 46.0 20.5 26 486-511 746-771 (1174)
114 PRK06620 hypothetical protein; 90.2 0.16 3.4E-06 54.8 2.0 49 186-237 11-62 (214)
115 PRK10929 putative mechanosensi 90.2 39 0.00085 45.1 23.6 44 930-973 598-647 (1109)
116 KOG0728 26S proteasome regulat 90.1 1.7 3.8E-05 48.2 9.8 18 219-236 181-198 (404)
117 PF08614 ATG16: Autophagy prot 90.1 3.1 6.6E-05 44.3 11.6 45 548-592 116-160 (194)
118 PF12128 DUF3584: Protein of u 90.0 44 0.00095 45.2 24.6 19 957-977 1045-1064(1201)
119 KOG0976 Rho/Rac1-interacting s 90.0 18 0.00039 45.7 18.8 26 619-644 254-279 (1265)
120 PRK12377 putative replication 89.9 0.21 4.5E-06 55.3 2.7 50 188-238 71-120 (248)
121 PRK08084 DNA replication initi 89.8 0.2 4.4E-06 54.5 2.5 47 186-237 17-63 (235)
122 KOG0995 Centromere-associated 89.8 21 0.00046 43.8 19.2 40 532-571 285-324 (581)
123 COG4372 Uncharacterized protei 89.7 49 0.0011 39.0 21.8 31 634-664 251-281 (499)
124 KOG1029 Endocytic adaptor prot 89.7 20 0.00044 45.1 19.0 32 630-661 488-519 (1118)
125 COG2805 PilT Tfp pilus assembl 89.7 0.16 3.5E-06 57.4 1.6 29 208-236 114-142 (353)
126 KOG4673 Transcription factor T 89.7 34 0.00073 42.8 20.6 66 435-505 399-470 (961)
127 PF10174 Cast: RIM-binding pro 89.7 26 0.00056 45.0 20.8 16 901-916 715-730 (775)
128 PRK14086 dnaA chromosomal repl 89.6 0.24 5.2E-06 61.1 3.1 51 185-237 282-332 (617)
129 PRK06893 DNA replication initi 89.5 0.21 4.5E-06 54.1 2.3 47 186-237 11-57 (229)
130 PF12128 DUF3584: Protein of u 89.5 26 0.00057 47.2 22.0 19 643-661 772-790 (1201)
131 KOG0804 Cytoplasmic Zn-finger 89.5 14 0.0003 44.0 16.9 22 567-588 426-447 (493)
132 TIGR01242 26Sp45 26S proteasom 89.4 0.8 1.7E-05 53.0 7.1 17 220-236 157-173 (364)
133 KOG4674 Uncharacterized conser 89.4 45 0.00097 46.3 23.4 30 475-504 1154-1183(1822)
134 PF15070 GOLGA2L5: Putative go 89.4 58 0.0013 41.0 23.2 51 545-595 164-214 (617)
135 PRK03992 proteasome-activating 89.0 0.96 2.1E-05 53.1 7.5 18 219-236 165-182 (389)
136 KOG0946 ER-Golgi vesicle-tethe 88.9 13 0.00028 47.0 16.8 27 568-594 736-762 (970)
137 KOG0946 ER-Golgi vesicle-tethe 88.8 3.8 8.2E-05 51.5 12.3 51 543-593 666-716 (970)
138 PRK10884 SH3 domain-containing 88.8 5.7 0.00012 43.0 12.5 21 488-508 93-113 (206)
139 PF15070 GOLGA2L5: Putative go 88.8 66 0.0014 40.5 23.1 25 872-897 435-459 (617)
140 PRK08116 hypothetical protein; 88.7 0.22 4.8E-06 55.5 1.8 51 186-237 80-132 (268)
141 KOG0982 Centrosomal protein Nu 88.6 16 0.00036 43.2 16.5 51 548-598 339-389 (502)
142 PF04156 IncA: IncA protein; 88.5 30 0.00066 36.3 17.5 16 488-503 88-103 (191)
143 PTZ00454 26S protease regulato 88.5 0.75 1.6E-05 54.3 6.1 51 186-236 140-196 (398)
144 smart00787 Spc7 Spc7 kinetocho 88.5 24 0.00051 40.7 17.8 58 537-594 207-264 (312)
145 PRK07952 DNA replication prote 88.4 0.35 7.5E-06 53.4 3.1 49 188-237 69-117 (244)
146 PRK14088 dnaA chromosomal repl 88.3 0.28 6E-06 58.5 2.4 50 185-237 99-148 (440)
147 PF04849 HAP1_N: HAP1 N-termin 88.3 42 0.00092 38.6 19.3 21 485-505 164-184 (306)
148 PF05483 SCP-1: Synaptonemal c 88.2 82 0.0018 39.7 23.4 29 119-147 165-193 (786)
149 PRK05642 DNA replication initi 88.2 0.35 7.5E-06 52.7 2.8 50 186-237 14-63 (234)
150 PF15066 CAGE1: Cancer-associa 87.9 71 0.0015 38.6 21.4 24 567-590 451-474 (527)
151 TIGR00362 DnaA chromosomal rep 87.8 0.33 7E-06 56.9 2.5 51 185-237 104-154 (405)
152 PF09730 BicD: Microtubule-ass 87.7 92 0.002 39.9 23.5 22 997-1018 549-570 (717)
153 PF00769 ERM: Ezrin/radixin/mo 87.7 25 0.00053 39.2 16.9 115 484-598 8-125 (246)
154 KOG0994 Extracellular matrix g 87.5 99 0.0022 41.1 23.3 58 57-114 1226-1286(1758)
155 PF15254 CCDC14: Coiled-coil d 87.5 44 0.00096 42.5 20.0 47 551-597 511-557 (861)
156 KOG0977 Nuclear envelope prote 87.5 68 0.0015 39.7 21.5 116 478-593 96-214 (546)
157 TIGR03420 DnaA_homol_Hda DnaA 87.5 0.39 8.5E-06 50.9 2.7 47 186-237 10-56 (226)
158 COG1340 Uncharacterized archae 87.3 61 0.0013 37.1 20.2 93 487-590 157-249 (294)
159 PRK00149 dnaA chromosomal repl 87.1 0.37 8E-06 57.3 2.5 51 185-237 116-166 (450)
160 COG2804 PulE Type II secretory 87.1 0.29 6.3E-06 58.7 1.6 31 208-238 247-277 (500)
161 PF09738 DUF2051: Double stran 87.0 43 0.00094 38.5 18.6 65 530-594 101-165 (302)
162 PF13870 DUF4201: Domain of un 86.8 44 0.00095 35.0 18.8 28 565-592 94-121 (177)
163 PF10498 IFT57: Intra-flagella 86.6 36 0.00078 40.0 18.1 15 575-589 334-348 (359)
164 PF00261 Tropomyosin: Tropomyo 86.5 56 0.0012 36.0 22.6 26 573-598 166-191 (237)
165 PRK09087 hypothetical protein; 86.5 0.42 9.2E-06 51.9 2.3 47 186-237 16-62 (226)
166 KOG0978 E3 ubiquitin ligase in 86.3 1.1E+02 0.0023 39.1 23.0 37 625-661 584-620 (698)
167 KOG0804 Cytoplasmic Zn-finger 86.1 38 0.00083 40.6 17.7 31 567-597 419-449 (493)
168 PF04111 APG6: Autophagy prote 85.9 13 0.00028 42.8 13.9 34 565-598 102-135 (314)
169 PRK08903 DnaA regulatory inact 85.9 0.56 1.2E-05 50.2 2.9 48 186-237 13-60 (227)
170 PF04156 IncA: IncA protein; 85.9 34 0.00073 36.0 16.1 22 481-502 95-116 (191)
171 KOG0980 Actin-binding protein 85.9 98 0.0021 40.1 21.9 19 627-645 525-543 (980)
172 KOG0612 Rho-associated, coiled 85.9 93 0.002 41.6 22.3 16 440-455 583-598 (1317)
173 COG3883 Uncharacterized protei 85.8 68 0.0015 36.3 19.3 19 488-506 73-91 (265)
174 PF04849 HAP1_N: HAP1 N-termin 85.8 74 0.0016 36.7 19.6 33 478-510 164-196 (306)
175 PRK14087 dnaA chromosomal repl 85.7 0.48 1E-05 56.7 2.4 49 187-237 111-159 (450)
176 KOG0727 26S proteasome regulat 85.3 7.4 0.00016 43.5 10.9 73 187-259 151-246 (408)
177 PRK01156 chromosome segregatio 85.3 1.3E+02 0.0029 39.2 24.3 16 221-236 25-40 (895)
178 COG2433 Uncharacterized conser 84.6 17 0.00036 44.9 14.3 15 163-177 131-145 (652)
179 KOG4674 Uncharacterized conser 84.4 78 0.0017 44.1 21.6 44 618-661 381-424 (1822)
180 COG4942 Membrane-bound metallo 84.3 1E+02 0.0022 37.0 23.6 27 482-508 60-86 (420)
181 KOG4360 Uncharacterized coiled 84.2 55 0.0012 39.8 18.0 21 482-502 167-187 (596)
182 PF10473 CENP-F_leu_zip: Leuci 84.1 54 0.0012 33.7 18.7 55 536-593 82-136 (140)
183 PF11559 ADIP: Afadin- and alp 83.9 53 0.0011 33.5 17.7 23 627-649 125-147 (151)
184 KOG2991 Splicing regulator [RN 83.8 81 0.0017 35.4 18.9 30 632-661 282-311 (330)
185 KOG0994 Extracellular matrix g 83.7 1.2E+02 0.0025 40.6 21.3 27 636-662 1725-1751(1758)
186 PF04012 PspA_IM30: PspA/IM30 83.6 48 0.0011 35.7 16.4 45 548-592 98-142 (221)
187 KOG4807 F-actin binding protei 83.6 1E+02 0.0022 36.5 20.2 28 632-659 509-536 (593)
188 TIGR01843 type_I_hlyD type I s 83.6 95 0.0021 36.1 22.4 27 633-659 244-270 (423)
189 PF15619 Lebercilin: Ciliary p 83.5 70 0.0015 34.5 17.8 23 572-594 167-189 (194)
190 KOG2751 Beclin-like protein [S 83.4 77 0.0017 38.0 18.6 26 573-598 243-268 (447)
191 TIGR02928 orc1/cdc6 family rep 83.3 0.82 1.8E-05 52.2 2.9 38 199-236 19-57 (365)
192 PF05701 WEMBL: Weak chloropla 83.2 82 0.0018 38.8 19.9 21 640-660 335-355 (522)
193 KOG0018 Structural maintenance 83.2 46 0.001 43.7 17.9 37 625-661 399-435 (1141)
194 PF04111 APG6: Autophagy prote 83.2 21 0.00047 41.0 14.1 40 551-590 95-134 (314)
195 PF10146 zf-C4H2: Zinc finger- 83.2 46 0.00099 36.9 16.0 50 542-591 54-103 (230)
196 PF07798 DUF1640: Protein of u 83.0 66 0.0014 33.9 18.8 18 575-592 137-154 (177)
197 PF10186 Atg14: UV radiation r 82.7 84 0.0018 34.8 19.1 24 483-506 22-45 (302)
198 COG1484 DnaC DNA replication p 82.7 0.85 1.9E-05 50.6 2.6 49 188-238 76-124 (254)
199 PF09728 Taxilin: Myosin-like 82.6 1E+02 0.0022 35.6 20.5 36 478-513 118-153 (309)
200 PF15619 Lebercilin: Ciliary p 82.0 80 0.0017 34.1 23.2 22 640-661 169-190 (194)
201 PF04851 ResIII: Type III rest 81.9 0.77 1.7E-05 46.2 1.8 30 209-238 14-44 (184)
202 PRK08727 hypothetical protein; 81.9 0.75 1.6E-05 50.0 1.8 45 186-237 14-59 (233)
203 KOG1937 Uncharacterized conser 81.8 97 0.0021 37.4 18.5 34 628-661 345-378 (521)
204 KOG0288 WD40 repeat protein Ti 81.8 86 0.0019 37.4 18.0 17 724-740 225-241 (459)
205 PF10498 IFT57: Intra-flagella 81.6 67 0.0014 37.9 17.5 44 550-593 275-318 (359)
206 PF14915 CCDC144C: CCDC144C pr 81.4 68 0.0015 36.8 16.6 17 533-549 69-85 (305)
207 PRK00411 cdc6 cell division co 81.3 1.3 2.8E-05 51.2 3.6 37 200-236 35-72 (394)
208 PF13863 DUF4200: Domain of un 81.2 57 0.0012 31.9 16.3 32 567-598 79-110 (126)
209 PRK10884 SH3 domain-containing 81.2 22 0.00048 38.6 12.5 29 478-506 90-118 (206)
210 PRK08939 primosomal protein Dn 80.9 0.79 1.7E-05 52.2 1.6 52 187-238 123-175 (306)
211 PF02841 GBP_C: Guanylate-bind 80.9 59 0.0013 36.9 16.5 17 573-589 281-297 (297)
212 PF06637 PV-1: PV-1 protein (P 80.9 84 0.0018 37.1 17.3 51 469-519 280-330 (442)
213 KOG4593 Mitotic checkpoint pro 80.8 1.4E+02 0.003 37.9 20.2 18 642-659 275-292 (716)
214 COG1842 PspA Phage shock prote 80.7 97 0.0021 34.2 17.5 24 486-509 29-52 (225)
215 PRK10929 putative mechanosensi 80.7 1.1E+02 0.0024 41.2 20.6 29 567-595 213-241 (1109)
216 KOG0249 LAR-interacting protei 80.5 85 0.0018 39.7 18.1 26 570-595 210-235 (916)
217 PF00261 Tropomyosin: Tropomyo 80.4 98 0.0021 34.1 23.2 27 632-658 208-234 (237)
218 TIGR01843 type_I_hlyD type I s 80.4 1.2E+02 0.0026 35.2 19.7 18 632-649 250-267 (423)
219 KOG0979 Structural maintenance 80.1 55 0.0012 42.8 17.0 14 223-236 46-59 (1072)
220 PRK04778 septation ring format 80.0 70 0.0015 39.8 18.0 27 774-801 516-542 (569)
221 PF15294 Leu_zip: Leucine zipp 80.0 47 0.001 37.8 14.8 34 485-518 129-162 (278)
222 COG1474 CDC6 Cdc6-related prot 79.4 1.2 2.7E-05 52.0 2.5 31 206-236 28-59 (366)
223 PRK11281 hypothetical protein; 79.2 84 0.0018 42.2 19.0 29 567-595 232-260 (1113)
224 KOG0963 Transcription factor/C 78.8 1.9E+02 0.004 36.4 21.9 87 555-661 182-268 (629)
225 KOG0978 E3 ubiquitin ligase in 78.8 1.1E+02 0.0023 39.0 18.8 48 547-594 572-619 (698)
226 KOG4360 Uncharacterized coiled 78.7 1.1E+02 0.0023 37.6 17.7 104 483-593 161-264 (596)
227 TIGR01005 eps_transp_fam exopo 78.7 1.5E+02 0.0033 37.9 20.9 16 937-952 651-666 (754)
228 PRK08181 transposase; Validate 78.5 1 2.2E-05 50.5 1.5 21 216-238 105-125 (269)
229 COG0593 DnaA ATPase involved i 78.5 1.3 2.8E-05 52.4 2.4 51 185-237 81-131 (408)
230 PRK06526 transposase; Provisio 78.0 1.1 2.3E-05 49.9 1.4 21 216-238 97-117 (254)
231 PF05483 SCP-1: Synaptonemal c 77.9 1.5E+02 0.0032 37.6 19.1 27 483-509 529-555 (786)
232 KOG1899 LAR transmembrane tyro 77.7 1.2E+02 0.0026 38.0 17.9 25 928-952 565-589 (861)
233 COG2433 Uncharacterized conser 77.6 38 0.00082 42.0 14.0 16 243-258 163-178 (652)
234 PF08614 ATG16: Autophagy prot 77.4 24 0.00053 37.6 11.4 51 539-589 128-178 (194)
235 cd00046 DEXDc DEAD-like helica 77.3 0.94 2E-05 42.4 0.7 17 222-238 3-19 (144)
236 PRK12422 chromosomal replicati 77.3 1.6 3.4E-05 52.3 2.7 51 185-237 105-159 (445)
237 TIGR02680 conserved hypothetic 77.3 3E+02 0.0064 38.1 23.9 34 396-429 183-219 (1353)
238 KOG0964 Structural maintenance 77.3 2.2E+02 0.0047 37.7 20.6 45 225-276 31-80 (1200)
239 cd00009 AAA The AAA+ (ATPases 77.1 1.4 3.1E-05 41.6 1.9 19 218-236 18-36 (151)
240 PF05266 DUF724: Protein of un 77.1 1.1E+02 0.0024 32.9 16.6 47 546-592 136-182 (190)
241 PF05701 WEMBL: Weak chloropla 76.8 2E+02 0.0043 35.6 23.0 20 574-593 335-354 (522)
242 PF15397 DUF4618: Domain of un 76.4 1.4E+02 0.0031 33.7 19.9 20 487-506 12-31 (258)
243 PRK10436 hypothetical protein; 76.3 1.1 2.5E-05 53.8 1.2 28 210-237 209-236 (462)
244 PTZ00112 origin recognition co 76.1 1.1 2.4E-05 57.2 1.0 32 205-236 765-798 (1164)
245 PF01920 Prefoldin_2: Prefoldi 76.1 30 0.00065 32.5 10.5 83 567-658 10-92 (106)
246 PRK12704 phosphodiesterase; Pr 75.8 2.1E+02 0.0046 35.4 20.8 32 766-799 278-309 (520)
247 KOG0964 Structural maintenance 75.8 1.1E+02 0.0024 40.1 17.6 18 313-330 117-134 (1200)
248 PRK06921 hypothetical protein; 75.7 1.6 3.6E-05 48.6 2.1 36 202-237 97-135 (266)
249 PRK00106 hypothetical protein; 75.7 2.2E+02 0.0047 35.5 21.1 63 724-801 261-326 (535)
250 KOG4809 Rab6 GTPase-interactin 75.7 51 0.0011 40.4 14.2 31 629-659 374-404 (654)
251 TIGR02538 type_IV_pilB type IV 75.5 1.2 2.7E-05 54.7 1.2 28 210-237 307-334 (564)
252 PF09738 DUF2051: Double stran 75.5 1.6E+02 0.0035 34.0 19.2 25 484-508 101-125 (302)
253 TIGR03319 YmdA_YtgF conserved 75.4 2.1E+02 0.0046 35.3 21.1 52 737-799 249-303 (514)
254 PRK04778 septation ring format 75.3 2.2E+02 0.0048 35.5 20.8 42 551-592 386-427 (569)
255 PRK11281 hypothetical protein; 75.3 80 0.0017 42.4 17.3 32 567-598 225-256 (1113)
256 PRK12402 replication factor C 75.2 1.5 3.3E-05 49.3 1.7 42 189-237 13-54 (337)
257 KOG0018 Structural maintenance 75.0 3E+02 0.0064 36.8 21.4 43 480-522 309-351 (1141)
258 PF10212 TTKRSYEDQ: Predicted 74.9 66 0.0014 39.4 15.1 28 555-582 487-514 (518)
259 TIGR02533 type_II_gspE general 74.6 1.5 3.3E-05 53.1 1.6 28 210-237 233-260 (486)
260 PF05622 HOOK: HOOK protein; 74.5 0.94 2E-05 57.2 -0.2 32 629-660 347-381 (713)
261 TIGR02680 conserved hypothetic 74.4 2.9E+02 0.0062 38.3 22.6 16 221-236 26-41 (1353)
262 PF13401 AAA_22: AAA domain; P 74.4 1.1 2.4E-05 43.1 0.3 18 219-236 4-21 (131)
263 PF10226 DUF2216: Uncharacteri 74.2 1.3E+02 0.0029 32.4 16.5 40 484-523 51-90 (195)
264 PF13191 AAA_16: AAA ATPase do 74.2 1.4 3.1E-05 44.7 1.0 33 204-236 9-41 (185)
265 KOG1853 LIS1-interacting prote 74.2 1.6E+02 0.0034 33.2 20.7 9 724-732 239-247 (333)
266 KOG0288 WD40 repeat protein Ti 74.0 1.5E+02 0.0031 35.6 16.9 19 738-756 225-243 (459)
267 PF13245 AAA_19: Part of AAA d 74.0 1.5 3.3E-05 39.9 1.0 25 211-236 3-27 (76)
268 smart00053 DYNc Dynamin, GTPas 73.9 9.5 0.00021 42.2 7.4 54 310-372 85-138 (240)
269 PF05384 DegS: Sensor protein 73.7 1.2E+02 0.0027 31.8 19.3 23 475-497 21-43 (159)
270 PF01935 DUF87: Domain of unkn 73.6 1.3 2.7E-05 47.5 0.6 16 221-236 25-40 (229)
271 KOG0999 Microtubule-associated 73.6 1.6E+02 0.0035 36.4 17.5 30 478-507 47-76 (772)
272 PF09730 BicD: Microtubule-ass 73.5 2.8E+02 0.006 35.8 24.7 50 545-597 132-184 (717)
273 PF07106 TBPIP: Tat binding pr 73.3 45 0.00097 34.7 11.9 59 57-115 73-136 (169)
274 PF00270 DEAD: DEAD/DEAH box h 73.3 1.8 3.9E-05 43.2 1.6 26 210-237 7-32 (169)
275 TIGR01420 pilT_fam pilus retra 73.3 1.6 3.5E-05 50.3 1.4 28 210-237 113-140 (343)
276 cd01131 PilT Pilus retraction 73.1 1.3 2.9E-05 46.9 0.6 19 219-237 1-19 (198)
277 KOG0240 Kinesin (SMY1 subfamil 73.0 2.5E+02 0.0054 35.0 19.4 25 571-595 519-543 (607)
278 PF10146 zf-C4H2: Zinc finger- 73.0 1.2E+02 0.0027 33.6 15.5 64 535-598 40-103 (230)
279 PF12846 AAA_10: AAA-like doma 72.7 1.4 3E-05 48.1 0.6 19 219-237 1-19 (304)
280 KOG4603 TBP-1 interacting prot 72.7 20 0.00044 37.8 8.8 34 58-91 81-114 (201)
281 KOG1003 Actin filament-coating 72.7 1.5E+02 0.0032 32.3 18.4 31 484-514 7-37 (205)
282 COG5008 PilU Tfp pilus assembl 72.7 2.2 4.8E-05 47.9 2.1 34 204-237 110-145 (375)
283 KOG0982 Centrosomal protein Nu 72.2 2.3E+02 0.0049 34.2 20.6 31 632-662 364-394 (502)
284 PF10473 CENP-F_leu_zip: Leuci 72.2 1.2E+02 0.0027 31.2 18.6 50 484-533 13-62 (140)
285 smart00382 AAA ATPases associa 72.1 1.5 3.2E-05 40.9 0.6 18 220-237 3-20 (148)
286 PF10186 Atg14: UV radiation r 71.9 1.7E+02 0.0036 32.5 20.8 15 490-504 22-36 (302)
287 KOG0999 Microtubule-associated 71.6 2.6E+02 0.0057 34.7 21.7 19 999-1017 566-584 (772)
288 PF05622 HOOK: HOOK protein; 71.5 1.3 2.8E-05 56.0 0.0 24 631-654 387-410 (713)
289 TIGR03752 conj_TIGR03752 integ 71.5 36 0.00079 41.2 11.8 19 575-593 122-140 (472)
290 TIGR03319 YmdA_YtgF conserved 71.5 1.3E+02 0.0028 37.2 16.8 14 999-1012 436-449 (514)
291 KOG0992 Uncharacterized conser 71.4 2.1E+02 0.0045 35.2 17.6 38 626-663 387-424 (613)
292 PF01637 Arch_ATPase: Archaeal 71.0 1.7 3.8E-05 45.3 0.9 30 207-236 8-37 (234)
293 TIGR02525 plasmid_TraJ plasmid 70.9 2.1 4.5E-05 50.2 1.6 20 218-237 148-167 (372)
294 PRK10865 protein disaggregatio 70.7 10 0.00022 49.3 7.6 45 188-236 565-615 (857)
295 PLN03188 kinesin-12 family pro 70.5 3.8E+02 0.0083 36.5 21.2 22 572-593 1169-1190(1320)
296 TIGR02524 dot_icm_DotB Dot/Icm 69.9 2.2 4.8E-05 49.7 1.4 21 217-237 132-152 (358)
297 PRK00409 recombination and DNA 69.6 1.4E+02 0.003 38.7 17.3 38 921-958 737-775 (782)
298 TIGR00634 recN DNA repair prot 69.3 2.3E+02 0.0049 35.2 18.6 68 750-834 440-507 (563)
299 TIGR02977 phageshock_pspA phag 69.2 1.8E+02 0.0038 31.7 16.5 111 486-596 29-140 (219)
300 TIGR03015 pepcterm_ATPase puta 69.2 3 6.5E-05 45.4 2.2 23 214-236 38-60 (269)
301 PF03915 AIP3: Actin interacti 69.1 2.7E+02 0.0058 33.7 18.5 76 482-557 214-294 (424)
302 PRK13894 conjugal transfer ATP 68.9 6.9 0.00015 45.0 5.1 28 208-236 138-165 (319)
303 KOG2751 Beclin-like protein [S 68.7 1.8E+02 0.0039 35.1 16.3 27 476-502 145-171 (447)
304 cd01129 PulE-GspE PulE/GspE Th 68.6 2.6 5.6E-05 47.0 1.6 29 209-237 70-98 (264)
305 PRK12704 phosphodiesterase; Pr 68.5 1.6E+02 0.0035 36.4 16.8 41 960-1012 415-455 (520)
306 PF05384 DegS: Sensor protein 68.3 1.6E+02 0.0035 30.9 19.6 29 486-514 25-53 (159)
307 TIGR02338 gimC_beta prefoldin, 68.0 68 0.0015 31.2 11.1 34 569-602 17-50 (110)
308 PRK10698 phage shock protein P 67.9 1.9E+02 0.0042 31.7 16.5 111 486-596 29-140 (222)
309 PF03915 AIP3: Actin interacti 67.6 1E+02 0.0022 37.2 14.4 20 733-752 356-375 (424)
310 TIGR01005 eps_transp_fam exopo 67.6 2.6E+02 0.0057 35.8 19.2 33 756-799 429-461 (754)
311 PF03148 Tektin: Tektin family 67.5 2.7E+02 0.0058 33.1 21.4 113 549-661 245-364 (384)
312 PF10212 TTKRSYEDQ: Predicted 67.3 1.3E+02 0.0027 37.2 15.1 12 226-237 222-233 (518)
313 KOG0243 Kinesin-like protein [ 67.0 2.4E+02 0.0052 37.6 18.2 21 390-410 376-397 (1041)
314 PF00437 T2SE: Type II/IV secr 66.6 2.1 4.6E-05 47.1 0.4 29 207-236 116-144 (270)
315 KOG3850 Predicted membrane pro 66.3 2.8E+02 0.006 33.1 16.8 16 576-591 324-339 (455)
316 PF07889 DUF1664: Protein of u 66.1 1.4E+02 0.003 30.3 12.9 43 547-589 81-123 (126)
317 KOG4593 Mitotic checkpoint pro 65.8 3.8E+02 0.0082 34.3 22.0 27 629-655 276-302 (716)
318 PRK00106 hypothetical protein; 65.8 2.9E+02 0.0064 34.4 18.2 41 960-1012 430-470 (535)
319 smart00806 AIP3 Actin interact 65.7 3.1E+02 0.0067 33.2 18.4 94 483-576 219-317 (426)
320 PRK09343 prefoldin subunit bet 65.5 1.5E+02 0.0033 29.5 14.4 36 564-599 80-115 (121)
321 KOG0979 Structural maintenance 65.4 3.3E+02 0.0072 36.1 18.8 10 166-175 17-26 (1072)
322 PRK01156 chromosome segregatio 65.4 4.2E+02 0.0092 34.7 23.4 9 957-965 804-812 (895)
323 PF10267 Tmemb_cc2: Predicted 65.2 2.2E+02 0.0048 34.1 16.4 43 547-589 275-318 (395)
324 PF15290 Syntaphilin: Golgi-lo 65.2 1.2E+02 0.0026 34.6 13.3 26 479-504 73-98 (305)
325 PRK09343 prefoldin subunit bet 65.1 85 0.0018 31.3 11.2 31 569-599 21-51 (121)
326 TIGR00635 ruvB Holliday juncti 64.9 3.3 7.1E-05 46.3 1.5 41 197-237 6-48 (305)
327 TIGR02338 gimC_beta prefoldin, 64.8 1.4E+02 0.0031 29.0 13.1 30 566-595 78-107 (110)
328 PF13604 AAA_30: AAA domain; P 64.6 3.3 7.2E-05 43.9 1.4 28 209-236 8-35 (196)
329 PRK11519 tyrosine kinase; Prov 64.6 4E+02 0.0088 34.2 21.1 24 427-450 226-249 (719)
330 PF06309 Torsin: Torsin; Inte 64.5 3 6.4E-05 42.0 0.9 26 221-256 55-80 (127)
331 PF06818 Fez1: Fez1; InterPro 64.4 1.5E+02 0.0032 32.5 13.5 50 469-518 12-61 (202)
332 PF10211 Ax_dynein_light: Axon 64.3 2.1E+02 0.0045 30.7 18.7 27 633-659 161-187 (189)
333 PF00448 SRP54: SRP54-type pro 64.2 2.5 5.3E-05 45.2 0.3 16 221-236 3-18 (196)
334 COG4026 Uncharacterized protei 64.0 60 0.0013 35.7 10.5 44 741-784 226-271 (290)
335 PF01695 IstB_IS21: IstB-like 63.8 3.6 7.8E-05 43.2 1.5 19 220-238 48-66 (178)
336 PTZ00361 26 proteosome regulat 63.8 21 0.00045 43.0 8.0 16 221-236 219-234 (438)
337 KOG0249 LAR-interacting protei 63.4 2E+02 0.0044 36.6 15.9 24 626-649 306-329 (916)
338 KOG4302 Microtubule-associated 63.4 1.9E+02 0.0042 36.8 16.1 22 729-750 337-358 (660)
339 PF13207 AAA_17: AAA domain; P 63.0 2.8 6.1E-05 39.9 0.5 16 221-236 1-16 (121)
340 TIGR03185 DNA_S_dndD DNA sulfu 63.0 2.1E+02 0.0046 36.1 16.9 16 221-236 30-45 (650)
341 TIGR02782 TrbB_P P-type conjug 62.9 3.8 8.2E-05 46.6 1.5 29 208-237 122-150 (299)
342 PF04949 Transcrip_act: Transc 62.5 72 0.0016 33.1 10.2 95 48-142 37-138 (159)
343 PF09789 DUF2353: Uncharacteri 62.4 3.1E+02 0.0067 32.1 18.1 29 630-658 128-156 (319)
344 PF13479 AAA_24: AAA domain 61.9 3.2 6.9E-05 44.5 0.7 20 219-238 3-22 (213)
345 PRK10361 DNA recombination pro 61.4 3.9E+02 0.0084 32.9 23.1 29 632-660 169-197 (475)
346 PF08172 CASP_C: CASP C termin 61.2 62 0.0013 36.2 10.5 37 630-666 95-138 (248)
347 PF13863 DUF4200: Domain of un 60.8 1.7E+02 0.0037 28.6 16.9 20 569-588 88-107 (126)
348 PRK09841 cryptic autophosphory 60.5 4.7E+02 0.01 33.6 20.5 21 933-953 632-652 (726)
349 TIGR01000 bacteriocin_acc bact 60.5 3.7E+02 0.0081 32.4 22.0 29 632-660 288-316 (457)
350 COG1842 PspA Phage shock prote 60.4 2.7E+02 0.0059 30.8 19.9 43 551-593 102-144 (225)
351 KOG4572 Predicted DNA-binding 60.3 4.8E+02 0.01 34.0 18.2 22 640-661 1090-1111(1424)
352 TIGR03185 DNA_S_dndD DNA sulfu 60.1 4.5E+02 0.0098 33.2 22.0 21 921-941 578-598 (650)
353 PF09787 Golgin_A5: Golgin sub 60.0 2.3E+02 0.005 34.8 16.1 19 575-593 361-379 (511)
354 PF05700 BCAS2: Breast carcino 60.0 1.1E+02 0.0023 33.6 11.9 23 485-507 140-162 (221)
355 PF14197 Cep57_CLD_2: Centroso 59.9 1.1E+02 0.0025 27.7 10.0 17 492-508 2-18 (69)
356 COG4477 EzrA Negative regulato 59.9 4.3E+02 0.0093 32.9 17.5 12 444-455 228-239 (570)
357 PF00004 AAA: ATPase family as 59.8 3.4 7.3E-05 39.4 0.4 15 222-236 1-15 (132)
358 PF07058 Myosin_HC-like: Myosi 59.7 3.3E+02 0.0072 31.6 18.8 32 570-601 60-91 (351)
359 COG4962 CpaF Flp pilus assembl 59.5 10 0.00022 44.1 4.2 30 207-237 162-191 (355)
360 PF13086 AAA_11: AAA domain; P 59.3 4.7 0.0001 42.0 1.4 26 211-237 10-35 (236)
361 cd01130 VirB11-like_ATPase Typ 59.0 5 0.00011 42.0 1.5 30 207-237 14-43 (186)
362 PF10046 BLOC1_2: Biogenesis o 58.9 1.1E+02 0.0023 29.4 10.4 63 63-126 35-97 (99)
363 PF04102 SlyX: SlyX; InterPro 58.9 49 0.0011 29.8 7.6 49 547-595 3-51 (69)
364 PRK13729 conjugal transfer pil 58.7 37 0.0008 41.2 8.6 48 546-593 74-121 (475)
365 PRK13833 conjugal transfer pro 58.5 4.7 0.0001 46.5 1.3 29 208-237 134-162 (323)
366 PF07106 TBPIP: Tat binding pr 58.5 1.3E+02 0.0028 31.3 11.8 28 484-511 75-102 (169)
367 KOG2543 Origin recognition com 58.5 4.6 9.9E-05 47.5 1.2 38 221-279 32-69 (438)
368 PRK13900 type IV secretion sys 58.5 5 0.00011 46.3 1.5 30 207-237 149-178 (332)
369 COG1382 GimC Prefoldin, chaper 58.4 2.1E+02 0.0045 28.8 14.4 40 558-597 73-112 (119)
370 PF14915 CCDC144C: CCDC144C pr 58.4 3.5E+02 0.0075 31.3 22.3 22 484-505 59-80 (305)
371 PRK12723 flagellar biosynthesi 58.3 6.6 0.00014 46.4 2.5 18 219-236 174-191 (388)
372 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.1 2.1E+02 0.0045 28.7 19.1 21 573-593 102-122 (132)
373 TIGR03007 pepcterm_ChnLen poly 58.0 4.1E+02 0.0089 32.1 20.1 20 576-595 275-294 (498)
374 KOG1937 Uncharacterized conser 57.7 3.4E+02 0.0074 33.0 15.9 31 562-592 345-375 (521)
375 TIGR00634 recN DNA repair prot 57.7 2.9E+02 0.0062 34.4 16.5 15 222-236 25-39 (563)
376 PF05911 DUF869: Plant protein 56.9 5.7E+02 0.012 33.4 22.5 272 436-707 47-355 (769)
377 smart00487 DEXDc DEAD-like hel 56.6 6.9 0.00015 39.0 2.0 18 220-237 25-42 (201)
378 PF14992 TMCO5: TMCO5 family 56.3 2E+02 0.0043 32.9 13.4 37 781-817 231-269 (280)
379 PF08826 DMPK_coil: DMPK coile 56.3 1.4E+02 0.0031 26.6 9.7 19 574-592 37-55 (61)
380 KOG1103 Predicted coiled-coil 56.1 4E+02 0.0086 31.3 16.5 17 388-404 57-73 (561)
381 KOG4677 Golgi integral membran 55.9 2.9E+02 0.0062 33.6 14.8 35 627-661 430-464 (554)
382 TIGR02231 conserved hypothetic 55.9 1.3E+02 0.0027 37.0 13.0 30 482-511 72-101 (525)
383 TIGR01000 bacteriocin_acc bact 55.8 4.4E+02 0.0095 31.8 22.0 21 639-659 288-308 (457)
384 PF07795 DUF1635: Protein of u 55.8 1.6E+02 0.0035 32.4 12.1 46 752-830 115-175 (214)
385 PF06160 EzrA: Septation ring 55.7 2.9E+02 0.0063 34.4 16.1 46 549-594 380-425 (560)
386 PF09304 Cortex-I_coil: Cortex 55.3 1.6E+02 0.0035 29.1 10.7 25 568-592 50-74 (107)
387 TIGR03495 phage_LysB phage lys 55.2 1.9E+02 0.0041 29.7 11.8 32 559-590 65-96 (135)
388 TIGR03007 pepcterm_ChnLen poly 55.0 4.6E+02 0.0099 31.7 25.0 30 632-661 352-381 (498)
389 PF10267 Tmemb_cc2: Predicted 54.9 4.1E+02 0.0088 32.0 16.2 20 58-77 6-25 (395)
390 PF13514 AAA_27: AAA domain 54.7 7E+02 0.015 33.8 24.3 35 627-661 352-386 (1111)
391 PF01580 FtsK_SpoIIIE: FtsK/Sp 54.6 4.4 9.6E-05 42.7 0.3 17 221-237 40-56 (205)
392 PF07058 Myosin_HC-like: Myosi 54.5 4E+02 0.0087 30.9 20.7 16 577-592 116-131 (351)
393 PRK04406 hypothetical protein; 54.5 86 0.0019 28.9 8.5 49 546-594 9-57 (75)
394 KOG0926 DEAH-box RNA helicase 54.3 7.2 0.00016 49.4 2.0 73 916-1008 1088-1160(1172)
395 TIGR00631 uvrb excinuclease AB 54.1 9.5 0.00021 48.0 3.0 90 188-282 2-98 (655)
396 KOG4460 Nuclear pore complex, 54.0 5.3E+02 0.012 32.2 19.9 57 538-594 620-687 (741)
397 PRK13851 type IV secretion sys 53.7 5.1 0.00011 46.5 0.6 30 207-237 151-180 (344)
398 PRK13342 recombination factor 53.7 6.8 0.00015 46.3 1.7 39 199-237 16-54 (413)
399 PHA02544 44 clamp loader, smal 53.6 7.4 0.00016 43.7 1.8 22 216-237 39-61 (316)
400 KOG0962 DNA repair protein RAD 53.5 5.5E+02 0.012 35.3 18.4 19 913-942 1186-1204(1294)
401 TIGR03819 heli_sec_ATPase heli 53.5 9.9 0.00022 44.1 2.9 30 207-237 167-196 (340)
402 PTZ00424 helicase 45; Provisio 53.4 6.8 0.00015 45.3 1.5 26 209-236 57-82 (401)
403 TIGR03499 FlhF flagellar biosy 53.2 5.2 0.00011 45.0 0.6 17 221-237 196-212 (282)
404 KOG4364 Chromatin assembly fac 53.0 2.9E+02 0.0062 35.1 14.7 27 636-662 360-386 (811)
405 PF05557 MAD: Mitotic checkpoi 53.0 40 0.00087 43.0 8.3 79 566-661 507-585 (722)
406 TIGR01069 mutS2 MutS2 family p 53.0 3.1E+02 0.0068 35.6 16.1 35 921-955 726-762 (771)
407 KOG2129 Uncharacterized conser 52.9 4.9E+02 0.011 31.4 16.9 18 787-804 300-317 (552)
408 PF13671 AAA_33: AAA domain; P 52.9 5.4 0.00012 38.9 0.6 16 221-236 1-16 (143)
409 PRK11776 ATP-dependent RNA hel 52.8 7.6 0.00016 46.3 1.8 26 209-236 33-58 (460)
410 PF15272 BBP1_C: Spindle pole 52.6 3.4E+02 0.0075 29.6 19.0 79 517-598 76-154 (196)
411 PF11932 DUF3450: Protein of u 52.5 3.6E+02 0.0079 29.8 14.8 6 726-731 197-202 (251)
412 PF13094 CENP-Q: CENP-Q, a CEN 52.4 2.8E+02 0.0061 28.6 13.3 70 451-520 1-73 (160)
413 KOG1850 Myosin-like coiled-coi 52.4 4.4E+02 0.0096 30.8 21.7 37 477-513 119-155 (391)
414 cd00268 DEADc DEAD-box helicas 52.4 8.4 0.00018 40.0 1.9 25 210-236 29-53 (203)
415 PF05673 DUF815: Protein of un 51.7 9.9 0.00022 42.4 2.4 71 187-284 23-94 (249)
416 PF05496 RuvB_N: Holliday junc 51.6 12 0.00027 41.3 3.0 43 194-236 23-67 (233)
417 KOG0989 Replication factor C, 51.5 10 0.00022 43.6 2.5 47 191-237 27-75 (346)
418 PF03148 Tektin: Tektin family 51.3 4.9E+02 0.011 30.9 18.0 79 67-148 14-96 (384)
419 PRK04195 replication factor C 51.2 9.7 0.00021 46.0 2.4 37 200-236 19-56 (482)
420 PF08702 Fib_alpha: Fibrinogen 51.0 3E+02 0.0065 28.4 17.9 30 568-597 103-132 (146)
421 PRK00409 recombination and DNA 50.9 1.5E+02 0.0033 38.4 13.0 17 220-236 328-344 (782)
422 KOG2010 Double stranded RNA bi 50.9 80 0.0017 36.5 9.1 75 518-592 124-198 (405)
423 PLN03137 ATP-dependent DNA hel 50.7 67 0.0014 43.1 9.8 27 208-236 466-492 (1195)
424 PF05970 PIF1: PIF1-like helic 50.7 8.9 0.00019 44.6 1.9 36 198-236 4-39 (364)
425 PRK06547 hypothetical protein; 50.6 9.3 0.0002 40.0 1.9 28 209-236 5-32 (172)
426 PF00910 RNA_helicase: RNA hel 50.5 5.7 0.00012 37.9 0.3 26 222-257 1-26 (107)
427 PRK00080 ruvB Holliday junctio 50.4 8 0.00017 44.1 1.5 39 199-237 29-69 (328)
428 PF10481 CENP-F_N: Cenp-F N-te 50.2 4.4E+02 0.0096 30.2 18.4 27 628-654 162-188 (307)
429 PF15290 Syntaphilin: Golgi-lo 50.1 4.1E+02 0.0089 30.5 14.3 36 469-504 70-105 (305)
430 PLN02939 transferase, transfer 50.1 7E+02 0.015 33.4 18.4 24 699-722 505-528 (977)
431 PF13238 AAA_18: AAA domain; P 49.9 6.3 0.00014 37.3 0.5 15 222-236 1-15 (129)
432 PF03215 Rad17: Rad17 cell cyc 49.8 8.6 0.00019 47.1 1.7 31 206-236 30-62 (519)
433 COG0419 SbcC ATPase involved i 49.5 7.6E+02 0.016 32.6 24.7 35 219-255 25-66 (908)
434 PF00580 UvrD-helicase: UvrD/R 49.4 6.6 0.00014 43.1 0.6 29 218-255 12-40 (315)
435 KOG0335 ATP-dependent RNA heli 49.0 7.2 0.00016 47.1 0.8 62 211-279 105-189 (482)
436 TIGR03495 phage_LysB phage lys 49.0 1.5E+02 0.0032 30.5 10.0 26 632-657 72-97 (135)
437 PF15450 DUF4631: Domain of un 49.0 6.2E+02 0.013 31.5 19.0 22 55-76 12-33 (531)
438 PRK13764 ATPase; Provisional 48.8 7.8 0.00017 48.3 1.1 20 218-237 256-275 (602)
439 PF06414 Zeta_toxin: Zeta toxi 48.8 7.1 0.00015 41.2 0.7 20 217-236 13-32 (199)
440 TIGR02449 conserved hypothetic 48.7 1.6E+02 0.0035 26.6 9.0 46 544-589 17-62 (65)
441 PF06120 Phage_HK97_TLTM: Tail 48.6 4.9E+02 0.011 30.2 19.8 83 423-507 21-107 (301)
442 PRK11192 ATP-dependent RNA hel 48.6 9.4 0.0002 45.0 1.7 26 209-236 30-55 (434)
443 PF10211 Ax_dynein_light: Axon 48.6 3.7E+02 0.0081 28.8 21.1 63 531-593 124-187 (189)
444 PF06005 DUF904: Protein of un 48.4 1.9E+02 0.004 26.6 9.5 61 538-598 1-61 (72)
445 PF06160 EzrA: Septation ring 48.4 6.4E+02 0.014 31.5 21.5 20 640-659 276-295 (560)
446 PRK09183 transposase/IS protei 48.3 9.7 0.00021 42.3 1.7 20 216-237 101-120 (259)
447 TIGR00348 hsdR type I site-spe 48.2 10 0.00022 47.8 2.0 30 207-237 247-281 (667)
448 TIGR02231 conserved hypothetic 48.2 1.4E+02 0.0031 36.5 11.7 86 57-142 72-171 (525)
449 PF07728 AAA_5: AAA domain (dy 47.9 6.9 0.00015 38.4 0.4 15 222-236 2-16 (139)
450 PF09766 FimP: Fms-interacting 47.7 3.5E+02 0.0077 31.8 14.3 34 473-506 18-51 (355)
451 PF02562 PhoH: PhoH-like prote 47.6 11 0.00023 41.0 1.8 19 218-236 18-36 (205)
452 PF02841 GBP_C: Guanylate-bind 47.6 4.7E+02 0.01 29.7 15.7 17 578-594 279-295 (297)
453 PRK13729 conjugal transfer pil 47.5 2.5E+02 0.0055 34.3 13.1 20 632-651 101-120 (475)
454 PRK04837 ATP-dependent RNA hel 47.4 9.8 0.00021 44.8 1.6 26 209-236 37-62 (423)
455 cd00632 Prefoldin_beta Prefold 47.4 1.7E+02 0.0038 28.1 9.9 34 626-659 68-101 (105)
456 COG0419 SbcC ATPase involved i 47.3 8.1E+02 0.018 32.4 22.9 6 231-236 82-87 (908)
457 TIGR03752 conj_TIGR03752 integ 47.2 2.2E+02 0.0048 34.8 12.5 28 632-659 113-140 (472)
458 PLN03025 replication factor C 47.2 9.5 0.00021 43.4 1.4 42 189-237 11-52 (319)
459 PRK00295 hypothetical protein; 46.8 1.3E+02 0.0028 27.2 8.2 48 548-595 5-52 (68)
460 KOG3091 Nuclear pore complex, 46.7 4E+02 0.0087 32.8 14.4 36 625-661 412-447 (508)
461 PF07724 AAA_2: AAA domain (Cd 46.6 7.3 0.00016 40.7 0.4 17 220-236 4-20 (171)
462 PF15035 Rootletin: Ciliary ro 46.6 4E+02 0.0087 28.6 15.0 170 480-658 1-182 (182)
463 PF00063 Myosin_head: Myosin h 46.3 9.6 0.00021 48.1 1.4 34 203-236 68-102 (689)
464 COG1201 Lhr Lhr-like helicases 46.2 19 0.00041 46.4 3.9 37 209-256 29-65 (814)
465 PF09744 Jnk-SapK_ap_N: JNK_SA 46.0 3.8E+02 0.0083 28.2 13.6 16 489-504 51-66 (158)
466 COG4209 LplB ABC-type polysacc 45.7 5.8 0.00013 44.7 -0.5 24 734-759 190-213 (309)
467 PF07851 TMPIT: TMPIT-like pro 45.5 3.5E+02 0.0076 31.7 13.5 14 647-660 119-132 (330)
468 PRK10590 ATP-dependent RNA hel 45.4 12 0.00026 44.8 1.9 26 209-236 30-55 (456)
469 PRK14722 flhF flagellar biosyn 45.3 8.6 0.00019 45.3 0.7 18 219-236 137-154 (374)
470 PRK02119 hypothetical protein; 45.2 1.4E+02 0.0031 27.3 8.3 48 547-594 8-55 (73)
471 PRK00440 rfc replication facto 44.8 11 0.00024 42.0 1.4 21 216-236 35-55 (319)
472 PF11932 DUF3450: Protein of u 44.6 4.8E+02 0.01 28.9 18.0 13 580-592 150-162 (251)
473 PF08826 DMPK_coil: DMPK coile 44.6 2.3E+02 0.005 25.3 9.9 31 559-589 29-59 (61)
474 TIGR01241 FtsH_fam ATP-depende 44.4 8.8 0.00019 46.5 0.6 51 186-236 50-105 (495)
475 COG0630 VirB11 Type IV secreto 44.2 43 0.00093 38.5 6.1 19 219-237 143-161 (312)
476 PRK02793 phi X174 lysis protei 44.0 1.4E+02 0.0031 27.2 8.2 48 548-595 8-55 (72)
477 TIGR02881 spore_V_K stage V sp 43.4 9.4 0.0002 42.1 0.6 17 220-236 43-59 (261)
478 COG1223 Predicted ATPase (AAA+ 43.2 9.6 0.00021 43.0 0.6 17 220-236 152-168 (368)
479 PF15066 CAGE1: Cancer-associa 43.1 7.2E+02 0.016 30.5 18.2 13 392-404 312-324 (527)
480 PRK10869 recombination and rep 43.0 4.6E+02 0.01 32.7 15.0 14 223-236 26-39 (553)
481 PF06705 SF-assemblin: SF-asse 42.9 5E+02 0.011 28.7 23.7 33 625-657 158-190 (247)
482 PF12004 DUF3498: Domain of un 42.8 8.1 0.00018 46.9 0.0 28 484-511 372-399 (495)
483 PRK00771 signal recognition pa 42.8 18 0.00039 43.5 2.9 19 218-236 94-112 (437)
484 PRK04325 hypothetical protein; 42.5 1.6E+02 0.0036 27.0 8.3 47 548-594 9-55 (74)
485 COG1222 RPT1 ATP-dependent 26S 42.5 32 0.00068 40.5 4.6 47 189-235 149-201 (406)
486 PF07111 HCR: Alpha helical co 42.5 8.7E+02 0.019 31.3 22.5 19 776-794 401-419 (739)
487 PRK00736 hypothetical protein; 42.4 1.6E+02 0.0034 26.6 8.1 46 549-594 6-51 (68)
488 PF04012 PspA_IM30: PspA/IM30 42.3 4.7E+02 0.01 28.2 23.7 52 548-599 91-142 (221)
489 PF02994 Transposase_22: L1 tr 42.3 67 0.0014 37.9 7.4 16 574-589 170-185 (370)
490 PRK13341 recombination factor 42.2 13 0.00028 47.4 1.7 45 189-237 26-70 (725)
491 PF12329 TMF_DNA_bd: TATA elem 42.2 2.6E+02 0.0057 25.6 9.6 25 481-505 5-29 (74)
492 TIGR03017 EpsF chain length de 42.0 4.6E+02 0.0099 31.1 14.4 109 490-598 256-364 (444)
493 PF05769 DUF837: Protein of un 42.0 4.7E+02 0.01 28.1 15.8 27 485-511 67-93 (181)
494 PRK11889 flhF flagellar biosyn 41.6 16 0.00035 43.6 2.2 17 220-236 242-258 (436)
495 PF14282 FlxA: FlxA-like prote 41.5 2.1E+02 0.0045 27.9 9.4 53 544-596 22-78 (106)
496 CHL00176 ftsH cell division pr 41.4 14 0.0003 46.5 1.6 47 186-236 178-233 (638)
497 KOG2077 JNK/SAPK-associated pr 41.3 3.4E+02 0.0073 33.9 12.7 13 809-821 562-574 (832)
498 PRK05703 flhF flagellar biosyn 41.2 17 0.00036 43.6 2.2 35 202-236 197-238 (424)
499 PHA00729 NTP-binding motif con 41.1 16 0.00034 40.3 1.8 28 207-234 5-32 (226)
500 PRK04406 hypothetical protein; 41.1 1.4E+02 0.0031 27.5 7.8 52 547-598 3-54 (75)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.5e-82 Score=758.34 Aligned_cols=392 Identities=38% Similarity=0.563 Sum_probs=330.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhhhhhhhcccCCC
Q 001652 65 VQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLTAKG 144 (1037)
Q Consensus 65 v~~l~~~l~~~~~~~~~l~~e~~~~q~~~~~~~~~~~~~l~~L~~~~~~l~~~~~e~e~r~~~~~~eRrkLhN~l~elkG 144 (1037)
+..|++++..++..+..++.++..++..+ ++.+.........|......+.+++ .+..+||+|||+++++||
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREV-------QEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 45555555555555555555554443322 2222222233334444444444455 667889999999999999
Q ss_pred CEEEEEeeCCCCCCCCC---c-eEeecCCcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhchHHhHHhhhcCCcc
Q 001652 145 NIKVFCRTRPLFEDEGP---S-VVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNV 220 (1037)
Q Consensus 145 nIrV~~RVRPl~~~E~~---~-~v~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~ 220 (1037)
||||||||||+.+++.. . ++..++...+.+..+....+...+.|.||+||+|.++|++||.++.|+|++||||||+
T Consensus 315 nIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnV 394 (670)
T KOG0239|consen 315 NIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNV 394 (670)
T ss_pred CceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcce
Confidence 99999999999988754 2 3333333456666665544444457999999999999999999999999999999999
Q ss_pred ceeeeccCCCCccccccc-CCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC-CCceEEEec
Q 001652 221 SIFAYGQTHSGKTHTMEG-SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-NGLAKIRLQ 298 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM~G-s~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~-~~~~~i~~~ 298 (1037)
||||||||||||||||.| +++++|||||++++||..+..... +|.|.+.++|+|||||.|+|||++.. .....|..+
T Consensus 395 CIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~ 473 (670)
T KOG0239|consen 395 CIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDD 473 (670)
T ss_pred eEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHHhccccccccceeEEEc
Confidence 999999999999999999 699999999999999999988766 99999999999999999999998874 344444443
Q ss_pred --ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCCceeeeeEEEEEecCCccc
Q 001652 299 --SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGL 372 (1037)
Q Consensus 299 --~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g~~~~SkL~LVDLAGSER~ 372 (1037)
....+.+++...|.+..++..+++.|.++|+++.|. |||||+||+|+|...+..++..+.++|+|||||||||+
T Consensus 474 ~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~ 553 (670)
T KOG0239|consen 474 AEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERV 553 (670)
T ss_pred CCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCccc
Confidence 345788999999999999999999999999999885 89999999999999999999999999999999999999
Q ss_pred cccCCccchhHHHHHhhhhHHHHHHHHHhhccCCCCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHHhHhHH
Q 001652 373 IAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNF 452 (1037)
Q Consensus 373 ~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsTLrF 452 (1037)
++++++|+|++|+++||+||++||+||.||+.++.||||||||||+||||||||++||+|+|+|||...++.||+++|+|
T Consensus 554 ~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~F 633 (670)
T KOG0239|consen 554 SKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRF 633 (670)
T ss_pred CcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCc
Q 001652 453 SSRARSTVLSLGN 465 (1037)
Q Consensus 453 AsRar~I~~~~~n 465 (1037)
|+|++.+.++...
T Consensus 634 A~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 634 ATRVRSVELGSAR 646 (670)
T ss_pred HHHhhceeccccc
Confidence 9999999987654
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-80 Score=740.92 Aligned_cols=349 Identities=33% Similarity=0.500 Sum_probs=292.8
Q ss_pred cCCCCEEEEEeeCCCCCCCC----CceEeecC-CcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhc-hHHhHHhh
Q 001652 141 TAKGNIKVFCRTRPLFEDEG----PSVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1037)
Q Consensus 141 elkGnIrV~~RVRPl~~~E~----~~~v~~~d-~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~sv 214 (1037)
+-.-||+|+|||||+++.|. +.+|.+++ ...|.+.....+ ..-.++|+||+||||++.|.+||+. |+|+|..|
T Consensus 46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~s-k~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eV 124 (1041)
T KOG0243|consen 46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIAS-KQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEV 124 (1041)
T ss_pred CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEeccccc-ccccceeecceeeCcchhHHHHHHHHHHHHHHHH
Confidence 44569999999999998873 45677777 455777765222 1246899999999999999999998 69999999
Q ss_pred hcCCccceeeeccCCCCccccccc--------CCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccC
Q 001652 215 LDGYNVSIFAYGQTHSGKTHTMEG--------SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP 286 (1037)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM~G--------s~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~ 286 (1037)
+.|||||||||||||+||||||+| -+.+.|||||++.+||+.+.. .+.+|.|.|||+|+|||.|+|||+
T Consensus 125 l~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~---~~~EYsvKVSfLELYNEEl~DLLa 201 (1041)
T KOG0243|consen 125 LEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEA---QGAEYSVKVSFLELYNEELTDLLA 201 (1041)
T ss_pred hccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHh---cCCeEEEEEEehhhhhHHHHHhcC
Confidence 999999999999999999999999 467899999999999998864 357999999999999999999998
Q ss_pred CCCCCceEEEe---------cccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeec-c
Q 001652 287 QTGNGLAKIRL---------QSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-I 352 (1037)
Q Consensus 287 ~~~~~~~~i~~---------~~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~-~ 352 (1037)
+........++ .....+.|+.++.|+++.++..+|..|...|.+++|. |||||+||+|+|..... .
T Consensus 202 ~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~ 281 (1041)
T KOG0243|consen 202 SEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP 281 (1041)
T ss_pred CccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC
Confidence 87653111111 1123456899999999999999999999999999884 99999999999976543 3
Q ss_pred CCc--eeeeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCCCCCCCCCCccccccccccCCCcce
Q 001652 353 TGE--NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKT 430 (1037)
Q Consensus 353 ~g~--~~~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~hIPYRdSKLTrLLqdSLGGnSkT 430 (1037)
.|+ ...|||+||||||||.+.++|+.+.|.+||+.||+||.+||+||+||.++..|||||+|||||||||||||.+||
T Consensus 282 ~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT 361 (1041)
T KOG0243|consen 282 EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKT 361 (1041)
T ss_pred cchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCcee
Confidence 333 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCCCCCHHHHHhHhHHHHHhhhcccccCcchhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 431 LMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN 508 (1037)
Q Consensus 431 lmI~~ISPs~~~~~ETLsTLrFAsRar~I~~~~~n~~~i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~ 508 (1037)
+||+||||+..+++||++||.||.||++|+++|....... ++..+.+|-.||++|+..+.++.
T Consensus 362 ~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~---------------K~~llKd~~~EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 362 CIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLM---------------KKTLLKDLYEEIERLKRDLAAAR 424 (1041)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHH---------------HHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999987665433222 23344555555555555554443
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-78 Score=702.47 Aligned_cols=320 Identities=36% Similarity=0.525 Sum_probs=280.1
Q ss_pred CCCCEEEEEeeCCCCCCCCC----ceEeec-CCcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhch-HHhHHhhh
Q 001652 142 AKGNIKVFCRTRPLFEDEGP----SVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSAL 215 (1037)
Q Consensus 142 lkGnIrV~~RVRPl~~~E~~----~~v~~~-d~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~eV-~pLV~svL 215 (1037)
...+|+|++|+||+...+.. .++.++ ....+.+.++......+++.|+||.||+++++|++||+.+ .|+|++|+
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 34689999999999875521 223332 3345566666666667788999999999999999999986 99999999
Q ss_pred cCCccceeeeccCCCCcccccccC-CCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceE
Q 001652 216 DGYNVSIFAYGQTHSGKTHTMEGS-SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 294 (1037)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~Gs-~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~ 294 (1037)
+|||+||||||||||||||||.|+ ++..|||||++++||..|+.... ...|.|+|||+|||||.|+|||++.+.....
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~-~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~ 161 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKE-KTRFLVRVSYLEIYNESIRDLLSPVNPKGLE 161 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccc-cceEEEEeehHHHHhHHHHHHhCccCcCCce
Confidence 999999999999999999999999 67799999999999999986543 3389999999999999999999998765555
Q ss_pred EEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeec-cCC--ceeeeeEEEEE
Q 001652 295 IRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITG--ENLYSKLSLVD 365 (1037)
Q Consensus 295 i~~~--~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~-~~g--~~~~SkL~LVD 365 (1037)
++.+ ...++.+++.+.|.+++++..+|..|..+|.+++|. |||||+||+|+|++... ..+ ....|+|+|||
T Consensus 162 lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvD 241 (574)
T KOG4280|consen 162 LREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVD 241 (574)
T ss_pred eeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeee
Confidence 5543 345677999999999999999999999999998875 99999999999998322 222 34579999999
Q ss_pred ecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCCC-CCCCCCCccccccccccCCCcceeEEEeeCCCCCCHH
Q 001652 366 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1037)
Q Consensus 366 LAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~-hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ 444 (1037)
||||||..+++++|+|++||.+||+||++||+||.+|++++. ||||||||||+||||||||||||+||+||+|+..+++
T Consensus 242 LagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ 321 (574)
T KOG4280|consen 242 LAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYE 321 (574)
T ss_pred ccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhH
Confidence 999999999999999999999999999999999999999766 9999999999999999999999999999999999999
Q ss_pred HHHhHhHHHHHhhhcccc
Q 001652 445 ETLSSLNFSSRARSTVLS 462 (1037)
Q Consensus 445 ETLsTLrFAsRar~I~~~ 462 (1037)
||++||+||+||+.|.+.
T Consensus 322 ETlsTLrfA~Rak~I~nk 339 (574)
T KOG4280|consen 322 ETLSTLRFAQRAKAIKNK 339 (574)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999998654
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=5.6e-76 Score=667.04 Aligned_cols=353 Identities=33% Similarity=0.476 Sum_probs=295.7
Q ss_pred CCCCEEEEEeeCCCCCCCC----CceEeecC-CcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhc-hHHhHHhhh
Q 001652 142 AKGNIKVFCRTRPLFEDEG----PSVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 215 (1037)
Q Consensus 142 lkGnIrV~~RVRPl~~~E~----~~~v~~~d-~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~svL 215 (1037)
.-++|+|+||+||.+..|. ..+..+.. ..++.+...+. .+.|.||+||.|+++|++||+. +.|+|++||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~-----~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL 79 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKE-----TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVL 79 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccc-----cccceeeeecCCCccHHHHHHHHHHHHHHHHh
Confidence 4589999999999987652 22333333 55666654433 2789999999999999999998 599999999
Q ss_pred cCCccceeeeccCCCCcccccccCCC---CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCc
Q 001652 216 DGYNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 292 (1037)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~Gs~~---~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~ 292 (1037)
.|||+||||||||||||||||.|... ..||+||++++||+.|... ..+.+|.|+|||||||+|+|+|||++.+.+.
T Consensus 80 ~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~-~~n~efhVkVsy~EIYmEKi~DLL~~~k~nl 158 (607)
T KOG0240|consen 80 LGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSM-EENLEFHVKVSYFEIYMEKIRDLLDPEKTNL 158 (607)
T ss_pred cccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcC-cccceEEEEEEeehhhhhHHHHHhCcccCCc
Confidence 99999999999999999999999766 5699999999999999864 3467999999999999999999999877665
Q ss_pred eEEEecc-cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCCceeeeeEEEEEec
Q 001652 293 AKIRLQS-LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLA 367 (1037)
Q Consensus 293 ~~i~~~~-~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g~~~~SkL~LVDLA 367 (1037)
...+... ...+.|++...|.++++++++++.|..+|.++.|+ |||||+||+|+|++.+..+.....|+|.|||||
T Consensus 159 svheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLa 238 (607)
T KOG0240|consen 159 SVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLA 238 (607)
T ss_pred eeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcc
Confidence 4444322 34678999999999999999999999999988775 999999999999999999999999999999999
Q ss_pred CCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccC-CCCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHH
Q 001652 368 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSET 446 (1037)
Q Consensus 368 GSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k-~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ET 446 (1037)
|||+++++|+.|.-+.||.+||+||++||+||+||+.+ +.|||||||||||||||+|||||||.+|+|++|+..+..||
T Consensus 239 GSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET 318 (607)
T KOG0240|consen 239 GSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAET 318 (607)
T ss_pred cccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccc
Confidence 99999999999999999999999999999999999997 79999999999999999999999999999999999999999
Q ss_pred HhHhHHHHHhhhcccccCcchhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 447 LSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLR 501 (1037)
Q Consensus 447 LsTLrFAsRar~I~~~~~n~~~i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr 501 (1037)
.+||+|++||+.|...+.-+. .........++.++.+.+..++..++.+...|+
T Consensus 319 ~STl~fg~rak~ikN~v~~n~-e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~ 372 (607)
T KOG0240|consen 319 KSTLRFGNRAKTIKNTVWVNL-ELTAEEWKRKLEKKKDKNVALKEELEKLRNSLK 372 (607)
T ss_pred ccchhhccccccccchhhhhh-HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 999999999999865433221 112223333444444444444444444444443
No 5
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.6e-77 Score=700.98 Aligned_cols=346 Identities=31% Similarity=0.494 Sum_probs=297.1
Q ss_pred CCEEEEEeeCCCCCCCC---CceEeecCCcEEEEecCCCCCCCCCceeecceeeCCC-------CChhhHHhch-HHhHH
Q 001652 144 GNIKVFCRTRPLFEDEG---PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH-------VGQAELFSDV-QPFVQ 212 (1037)
Q Consensus 144 GnIrV~~RVRPl~~~E~---~~~v~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~~~-------asQ~eVF~eV-~pLV~ 212 (1037)
.+|+|.|||||++..|. ..+|....+.++++..+..+ .....|+||++|+.. ++|..||+++ .|+++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~--k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS--KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc--ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 58999999999998773 23444434444444443322 223459999999765 5799999998 89999
Q ss_pred hhhcCCccceeeeccCCCCcccccccCC--CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccC-CCC
Q 001652 213 SALDGYNVSIFAYGQTHSGKTHTMEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP-QTG 289 (1037)
Q Consensus 213 svLdGyN~~IfAYGQTGSGKTyTM~Gs~--~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~-~~~ 289 (1037)
.+|+|||+||||||||||||||||+|-. +++|||||+|++||..+.........|.|.|||+|||||+|+|||+ +..
T Consensus 82 ~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~ 161 (1221)
T KOG0245|consen 82 HAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKS 161 (1221)
T ss_pred HHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCC
Confidence 9999999999999999999999999977 8999999999999999998888889999999999999999999999 777
Q ss_pred CCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeecc--CC--ceeee
Q 001652 290 NGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG--ENLYS 359 (1037)
Q Consensus 290 ~~~~~i~~~~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~--~g--~~~~S 359 (1037)
.+...++... ..+|.+|+...|+|..++..++..|.+.|++++|+ |||||+||+|.+.+.... ++ ...+|
T Consensus 162 kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~S 241 (1221)
T KOG0245|consen 162 KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVS 241 (1221)
T ss_pred CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeee
Confidence 7766776543 46788999999999999999999999999999986 999999999999887543 22 45789
Q ss_pred eEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhcc-------CCCCCCCCCCccccccccccCCCcceeE
Q 001652 360 KLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-------RKDIVPYENSMLTKVLADSLGESSKTLM 432 (1037)
Q Consensus 360 kL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~-------k~~hIPYRdSKLTrLLqdSLGGnSkTlm 432 (1037)
+|+|||||||||+..+|+.|+|+||+.+|||||.+||.||+||++ +..+||||||-||+||+++|||||||+|
T Consensus 242 KIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaM 321 (1221)
T KOG0245|consen 242 KISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAM 321 (1221)
T ss_pred eeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhh
Confidence 999999999999999999999999999999999999999999985 2348999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHhHhHHHHHhhhccccc-CcchhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 433 IVNICPNAANMSETLSSLNFSSRARSTVLSL-GNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN 508 (1037)
Q Consensus 433 I~~ISPs~~~~~ETLsTLrFAsRar~I~~~~-~n~~~i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~ 508 (1037)
|++|||++.||+|||+|||||.|||+|++.. .|.+ ...+.|.+|++|+.+||..+....
T Consensus 322 IAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEd-----------------pnaKLIRELreEv~rLksll~~~~ 381 (1221)
T KOG0245|consen 322 IAALSPADINYEETLSTLRYADRAKQIVNNAVVNED-----------------PNAKLIRELREEVARLKSLLRAQG 381 (1221)
T ss_pred hhccChhhcChHHHHHHHHHhhHhhhhhccceeCCC-----------------ccHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999987432 2221 345678888888888888876543
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=5.8e-74 Score=643.48 Aligned_cols=313 Identities=32% Similarity=0.545 Sum_probs=279.9
Q ss_pred CEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCC--------CCCCCceeecceeeCCCCChhhHHhch-HHhH
Q 001652 145 NIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDT--------ISNPKKDFEFDRVYGPHVGQAELFSDV-QPFV 211 (1037)
Q Consensus 145 nIrV~~RVRPl~~~E----~~~~v~~~d~~tI~v~~~~~~--------~~~~~k~F~FD~VF~~~asQ~eVF~eV-~pLV 211 (1037)
||+|||||||+.+.| ...++.+.++..+.+.+.... .....+.|.||+||+++++|++||+.+ .|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 799999999998765 346788888877777654321 123468999999999999999999986 7999
Q ss_pred HhhhcCCccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCC
Q 001652 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 291 (1037)
Q Consensus 212 ~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~ 291 (1037)
+++++|||+||||||||||||||||+|++.++|||||++++||+.++... ..+.|.|++||+|||||+|+|||++....
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~~~~~ 159 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERK-DDKEFEVSLSYLEIYNETIRDLLSPSSGP 159 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcc-cCceEEEEEEEEEEECCEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999999999987643 46889999999999999999999886443
Q ss_pred ceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeecc---CCceeeeeEE
Q 001652 292 LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLS 362 (1037)
Q Consensus 292 ~~~i~~~~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~---~g~~~~SkL~ 362 (1037)
..++.+. ...+.++++..|.+.+++..+++.|.++|..+.|. |||||+||+|+|.+.+.. ......|+|+
T Consensus 160 -l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~ 238 (338)
T cd01370 160 -LELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLS 238 (338)
T ss_pred -ceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEE
Confidence 3444433 34567999999999999999999999999988774 899999999999988765 4556789999
Q ss_pred EEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCC---CCCCCCCCccccccccccCCCcceeEEEeeCCC
Q 001652 363 LVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPN 439 (1037)
Q Consensus 363 LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~---~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs 439 (1037)
|||||||||..+++..|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||||+
T Consensus 239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999877 899999999999999999999999999999999
Q ss_pred CCCHHHHHhHhHHHHHhhhc
Q 001652 440 AANMSETLSSLNFSSRARST 459 (1037)
Q Consensus 440 ~~~~~ETLsTLrFAsRar~I 459 (1037)
..+++||++||+||+||++|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999875
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.2e-73 Score=691.24 Aligned_cols=353 Identities=29% Similarity=0.464 Sum_probs=293.2
Q ss_pred hhhhhhhcccC----CCCEEEEEeeCCCCCCCC-CceEeecCCcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhc
Q 001652 132 KKRLFNDLLTA----KGNIKVFCRTRPLFEDEG-PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD 206 (1037)
Q Consensus 132 RrkLhN~l~el----kGnIrV~~RVRPl~~~E~-~~~v~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~e 206 (1037)
+|+|..+-... .++|+|||||||+.+.|. ..++...++..+.+. .+.|.||+||+++++|.+||+.
T Consensus 82 ~rk~~~~~~~en~~~ds~VkV~VRVRPl~~~E~g~~iV~~~s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~ 152 (1320)
T PLN03188 82 KRKLSAETAPENGVSDSGVKVIVRMKPLNKGEEGEMIVQKMSNDSLTIN---------GQTFTFDSIADPESTQEDIFQL 152 (1320)
T ss_pred hccccccccccccCCCCCeEEEEEcCCCCCccCCCeeEEEcCCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHH
Confidence 34555444333 579999999999987763 334444455555553 3789999999999999999999
Q ss_pred h-HHhHHhhhcCCccceeeeccCCCCcccccccCC----------CCCChHHHHHHHHHHhhccC----cccccccceeE
Q 001652 207 V-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS----------HDRGLYARCFEELFDLSNSD----TTATARFNFAV 271 (1037)
Q Consensus 207 V-~pLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~----------~~~GIIpRal~~LF~~i~~~----~~~~~~~~V~V 271 (1037)
+ .|+|+++++|||+||||||||||||||||+|+. .++|||||++++||..+... ......|.|+|
T Consensus 153 vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~v 232 (1320)
T PLN03188 153 VGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRC 232 (1320)
T ss_pred HHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEE
Confidence 6 899999999999999999999999999999963 56899999999999988642 22456799999
Q ss_pred EEEEEechhhhcccCCCCCCceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEE
Q 001652 272 TVFELYNEQLRELLPQTGNGLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIH 345 (1037)
Q Consensus 272 S~lEIYNE~I~DLL~~~~~~~~~i~~~--~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~ 345 (1037)
||+|||||+|||||++..... .++.+ ....+.+++++.|.+.+++..+|..|..+|.++.|. |||||+||+|+
T Consensus 233 SyLEIYNEkI~DLLsp~~k~L-~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~ 311 (1320)
T PLN03188 233 SFLEIYNEQITDLLDPSQKNL-QIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCV 311 (1320)
T ss_pred EEEeeecCcceeccccccCCc-eEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEE
Confidence 999999999999998865443 34333 334677999999999999999999999999988874 99999999999
Q ss_pred EEEeecc--C--CceeeeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhcc-----CCCCCCCCCCcc
Q 001652 346 IYYNNLI--T--GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-----RKDIVPYENSML 416 (1037)
Q Consensus 346 V~~~~~~--~--g~~~~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~-----k~~hIPYRdSKL 416 (1037)
|...... . .....|+|+|||||||||...+++.|.+++|+.+||+||++||+||.+|+. +..|||||||||
T Consensus 312 Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKL 391 (1320)
T PLN03188 312 VESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRL 391 (1320)
T ss_pred EEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchH
Confidence 9875432 2 224579999999999999999999999999999999999999999999975 457999999999
Q ss_pred ccccccccCCCcceeEEEeeCCCCCCHHHHHhHhHHHHHhhhcccccCcchhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 001652 417 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQE 496 (1037)
Q Consensus 417 TrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsTLrFAsRar~I~~~~~n~~~i~~~~~i~~~~~~el~~l~~eI~~Lk~E 496 (1037)
|+||||+|||||+|+|||||||...++.||++||+||+||+.|++.+...... ...+..+.+.|.+|++|
T Consensus 392 TrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~----------~~~vn~LrelIr~Lk~E 461 (1320)
T PLN03188 392 TFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVM----------QDDVNFLREVIRQLRDE 461 (1320)
T ss_pred HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccch----------hhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987654322111 11233466788888888
Q ss_pred HHHHHHHH
Q 001652 497 ILGLRQAL 504 (1037)
Q Consensus 497 i~~Lr~~L 504 (1037)
+..|+...
T Consensus 462 L~rLK~~~ 469 (1320)
T PLN03188 462 LQRVKANG 469 (1320)
T ss_pred HHHHHHhc
Confidence 88888764
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=8.9e-73 Score=633.67 Aligned_cols=309 Identities=36% Similarity=0.492 Sum_probs=268.5
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhch-HHhHHhhhcCC
Q 001652 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 218 (1037)
Q Consensus 144 GnIrV~~RVRPl~~~E~----~~~v~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~eV-~pLV~svLdGy 218 (1037)
+||||||||||+.+.|. ..++...++.++.+... +.+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~ 74 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGY 74 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 48999999999987763 24555555555554432 248999999999999999999986 89999999999
Q ss_pred ccceeeeccCCCCcccccccCC--------CCCChHHHHHHHHHHhhccCc---ccccccceeEEEEEEechhhhcccCC
Q 001652 219 NVSIFAYGQTHSGKTHTMEGSS--------HDRGLYARCFEELFDLSNSDT---TATARFNFAVTVFELYNEQLRELLPQ 287 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~Gs~--------~~~GIIpRal~~LF~~i~~~~---~~~~~~~V~VS~lEIYNE~I~DLL~~ 287 (1037)
|+||||||||||||||||+|+. .++|||||++++||..+.... .....|.|.+||+|||||+|+|||++
T Consensus 75 n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~ 154 (337)
T cd01373 75 NGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP 154 (337)
T ss_pred ceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC
Confidence 9999999999999999999975 368999999999999876432 24567999999999999999999987
Q ss_pred CCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCC--ceeee
Q 001652 288 TGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG--ENLYS 359 (1037)
Q Consensus 288 ~~~~~~~i~~~~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g--~~~~S 359 (1037)
..... .++.+. ...+.++++..|.+.+++.+++..|..+|..+.|. |||||+||+|+|...+...+ ....|
T Consensus 155 ~~~~l-~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s 233 (337)
T cd01373 155 TSRNL-KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTS 233 (337)
T ss_pred CCCCc-eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEE
Confidence 65543 343332 34567999999999999999999999999888764 89999999999987654433 34579
Q ss_pred eEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhcc----CCCCCCCCCCccccccccccCCCcceeEEEe
Q 001652 360 KLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS----RKDIVPYENSMLTKVLADSLGESSKTLMIVN 435 (1037)
Q Consensus 360 kL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~----k~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ 435 (1037)
+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+|||||+|+||+|
T Consensus 234 ~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~ 313 (337)
T cd01373 234 RLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIAN 313 (337)
T ss_pred EEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999974 4689999999999999999999999999999
Q ss_pred eCCCCCCHHHHHhHhHHHHHhhhc
Q 001652 436 ICPNAANMSETLSSLNFSSRARST 459 (1037)
Q Consensus 436 ISPs~~~~~ETLsTLrFAsRar~I 459 (1037)
|||+..+++||++||+||+||+.|
T Consensus 314 vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 314 VSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999875
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=5.2e-72 Score=629.34 Aligned_cols=307 Identities=31% Similarity=0.493 Sum_probs=273.7
Q ss_pred CCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCCC--------CCCCceeecceeeCCCCChhhHHhch-HHh
Q 001652 144 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTI--------SNPKKDFEFDRVYGPHVGQAELFSDV-QPF 210 (1037)
Q Consensus 144 GnIrV~~RVRPl~~~E----~~~~v~~~d~~tI~v~~~~~~~--------~~~~k~F~FD~VF~~~asQ~eVF~eV-~pL 210 (1037)
.+|+|||||||+.+.| ...++.+.++.+|.+.++.... ....+.|.||+||+++++|++||+.+ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 3799999999998775 3567888889999988765421 23568999999999999999999985 899
Q ss_pred HHhhhcCCccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCC
Q 001652 211 VQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN 290 (1037)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~ 290 (1037)
|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|.|||+|||||+|+|||++...
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-------~~v~~S~~EIyne~v~DLL~~~~~ 153 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLEDSPS 153 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-------eeEEEEEEEEeCCEeEeCCCCccc
Confidence 9999999999999999999999999999999999999999999998753 899999999999999999987653
Q ss_pred C-----ceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccC------
Q 001652 291 G-----LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT------ 353 (1037)
Q Consensus 291 ~-----~~~i~~~~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~------ 353 (1037)
. ...++.+. ...+.+++++.|.+.+++..++..|.++|.++.|. |||||+||+|++.+.....
T Consensus 154 ~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~ 233 (345)
T cd01368 154 STKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQ 233 (345)
T ss_pred cccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccccc
Confidence 2 23444433 33567899999999999999999999999988774 8999999999998765432
Q ss_pred --CceeeeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhcc------CCCCCCCCCCccccccccccC
Q 001652 354 --GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLG 425 (1037)
Q Consensus 354 --g~~~~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~------k~~hIPYRdSKLTrLLqdSLG 425 (1037)
+....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+||
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~ 313 (345)
T cd01368 234 DKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFD 313 (345)
T ss_pred CCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcC
Confidence 345689999999999999999999999999999999999999999999986 568999999999999999999
Q ss_pred CCcceeEEEeeCCCCCCHHHHHhHhHHHHHhh
Q 001652 426 ESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457 (1037)
Q Consensus 426 GnSkTlmI~~ISPs~~~~~ETLsTLrFAsRar 457 (1037)
|||+|+||+||||+..+++||++||+||++|+
T Consensus 314 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 314 GEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 10
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-72 Score=671.78 Aligned_cols=351 Identities=31% Similarity=0.477 Sum_probs=290.8
Q ss_pred CCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCC-CCCCCCceeecceeeCCCCChhhHHhc-hHHhHHhhhcC
Q 001652 144 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDD-TISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 217 (1037)
Q Consensus 144 GnIrV~~RVRPl~~~E----~~~~v~~~d~~tI~v~~~~~-~~~~~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~svLdG 217 (1037)
.+|.|+|||||+.+.+ ..+.+...++..+....... ........|.||+||+++++|++||+. ++|+|.+|+.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 5899999999998763 22334444455444433211 011115889999999999999999998 79999999999
Q ss_pred CccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEe
Q 001652 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL 297 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~i~~ 297 (1037)
||++|||||||||||||||.|...+|||||+++.+||+.|.... .+.|.|.|||+|||||.|+|||++++......+.
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~--~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED 163 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG--EREFSVRVSYLEIYNERIRDLLNPDGGDLRLRED 163 (675)
T ss_pred cccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC--CceeEEEEEEEEEeccccccccCCCCCCceEeEc
Confidence 99999999999999999999999999999999999999998654 7899999999999999999999998776433333
Q ss_pred cc-cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCCceeeeeEEEEEecCCccc
Q 001652 298 QS-LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGL 372 (1037)
Q Consensus 298 ~~-~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g~~~~SkL~LVDLAGSER~ 372 (1037)
.. ...|.+++++.|.|.+++..+|..|..+|+++.|. |||||+||+|.|......... ..++|+|||||||||+
T Consensus 164 ~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGSERa 242 (675)
T KOG0242|consen 164 SEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGSERA 242 (675)
T ss_pred CCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhhhhh
Confidence 33 45677999999999999999999999999998875 999999999999988754432 6789999999999999
Q ss_pred cccCCccchhHHHHHhhhhHHHHHHHHHhhccC--CCCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHHhHh
Q 001652 373 IAEDDSGERITDVLHVMKSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 450 (1037)
Q Consensus 373 ~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k--~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsTL 450 (1037)
.++++.|.|++|+++||+||++||+||++|+.+ ..||||||||||||||++|||||+|+|||||+|...+++||.+||
T Consensus 243 s~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL 322 (675)
T KOG0242|consen 243 SRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTL 322 (675)
T ss_pred hhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHH
Confidence 999999999999999999999999999999986 468999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccCcchhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 451 NFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALK 505 (1037)
Q Consensus 451 rFAsRar~I~~~~~n~~~i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~ 505 (1037)
+||+||++|.+.......... +.+. ..++.+|..|+.++..++....
T Consensus 323 ~fAsrak~i~~~~~~n~~~~~-~~~~-------~~~~~~i~~l~~e~~~~~~~~~ 369 (675)
T KOG0242|consen 323 KFASRAKEITTKAQVNVILSD-KALL-------KYLQREIAELEAELERLKKKLE 369 (675)
T ss_pred HHHHHhhhcccccccceecch-hhhh-------HHHHHHHHHHHHHHHhhccccc
Confidence 999999999865533221111 1111 1224566666666666554443
No 11
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.1e-70 Score=613.15 Aligned_cols=306 Identities=31% Similarity=0.453 Sum_probs=271.3
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCCCC----CCCceeecceeeCCCCChhhHHhc-hHHhHHhh
Q 001652 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1037)
Q Consensus 144 GnIrV~~RVRPl~~~E~----~~~v~~~d~~tI~v~~~~~~~~----~~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~sv 214 (1037)
+||+|||||||+.+.|. ..++.+.++.++.+..+..... ...+.|+||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999998773 4567777767888876533211 125889999999999999999998 59999999
Q ss_pred hcCCccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceE
Q 001652 215 LDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 294 (1037)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~ 294 (1037)
++|||+||||||||||||||||+|+..++||+||++++||+.++... ..|.|.+||+|||||+|+|||++.. ...
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~---~~~~v~~S~~EIy~e~v~DLL~~~~--~l~ 155 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN---DDLGVTVSFFEIYGGKLFDLLNDRK--RLS 155 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc---cccEEEEEEEeeecCchhhhccCcc--cee
Confidence 99999999999999999999999999999999999999999887533 6899999999999999999998733 234
Q ss_pred EEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCCceeeeeEEEEEecC
Q 001652 295 IRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 368 (1037)
Q Consensus 295 i~~~--~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g~~~~SkL~LVDLAG 368 (1037)
++.+ ....+.++++..|.+.+++..+++.|..+|..+.|. |||||+||+|+|...+. ....|+|+||||||
T Consensus 156 i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLAG 232 (322)
T cd01367 156 VLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLAG 232 (322)
T ss_pred EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecCC
Confidence 4433 234567899999999999999999999999988764 89999999999998764 45689999999999
Q ss_pred CccccccC-CccchhHHHHHhhhhHHHHHHHHHhhccCCCCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHH
Q 001652 369 SEGLIAED-DSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 447 (1037)
Q Consensus 369 SER~~ks~-~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETL 447 (1037)
|||....+ ..|.+++|+.+||+||++|++||.+|+.++.||||||||||+||+|+|||||+|+||+||||+..+++||+
T Consensus 233 sE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl 312 (322)
T cd01367 233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL 312 (322)
T ss_pred ccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence 99998765 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHhh
Q 001652 448 SSLNFSSRAR 457 (1037)
Q Consensus 448 sTLrFAsRar 457 (1037)
+||+||+|+|
T Consensus 313 ~tL~fa~r~k 322 (322)
T cd01367 313 NTLRYADRVK 322 (322)
T ss_pred HHHHHHHhhC
Confidence 9999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3.9e-70 Score=616.35 Aligned_cols=319 Identities=33% Similarity=0.516 Sum_probs=280.4
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCC--CCCCCCceeecceeeCCC-------CChhhHHhch-HH
Q 001652 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDD--TISNPKKDFEFDRVYGPH-------VGQAELFSDV-QP 209 (1037)
Q Consensus 144 GnIrV~~RVRPl~~~E~----~~~v~~~d~~tI~v~~~~~--~~~~~~k~F~FD~VF~~~-------asQ~eVF~eV-~p 209 (1037)
+||+||||+||+...|. ..++.+++ ..+.+.++.. ......+.|.||+||+++ ++|++||+.+ .|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999987652 35666666 6777776542 123456899999999999 9999999985 89
Q ss_pred hHHhhhcCCccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC
Q 001652 210 FVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 289 (1037)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~ 289 (1037)
+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.........|.|.+||+|||||+|+|||++..
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 159 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK 159 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc
Confidence 99999999999999999999999999999999999999999999999887655577899999999999999999998874
Q ss_pred --CCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeecc----CCcee
Q 001652 290 --NGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----TGENL 357 (1037)
Q Consensus 290 --~~~~~i~~~~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~----~g~~~ 357 (1037)
.....++.+. ...+.+++++.|.+.+++..++..|.++|..+.|. |||||+||+|+|.+.... .....
T Consensus 160 ~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~ 239 (356)
T cd01365 160 KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEK 239 (356)
T ss_pred cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceE
Confidence 2233444332 33567999999999999999999999999887764 899999999999887654 34567
Q ss_pred eeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccC--------CCCCCCCCCccccccccccCCCcc
Q 001652 358 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR--------KDIVPYENSMLTKVLADSLGESSK 429 (1037)
Q Consensus 358 ~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k--------~~hIPYRdSKLTrLLqdSLGGnSk 429 (1037)
.|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|+||||++
T Consensus 240 ~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~ 319 (356)
T cd01365 240 VSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSK 319 (356)
T ss_pred EEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCce
Confidence 899999999999999999999999999999999999999999999863 489999999999999999999999
Q ss_pred eeEEEeeCCCCCCHHHHHhHhHHHHHhhhccccc
Q 001652 430 TLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1037)
Q Consensus 430 TlmI~~ISPs~~~~~ETLsTLrFAsRar~I~~~~ 463 (1037)
|+||+||+|...+++||++||+||+|+++|++.+
T Consensus 320 t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~ 353 (356)
T cd01365 320 TAMIATISPADINYEETLSTLRYADRAKKIVNVA 353 (356)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999999987654
No 13
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-70 Score=633.47 Aligned_cols=392 Identities=31% Similarity=0.447 Sum_probs=314.6
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCC---CCCCCCCceeecceeeCCC-------CChhhHHhch-
Q 001652 143 KGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGD---DTISNPKKDFEFDRVYGPH-------VGQAELFSDV- 207 (1037)
Q Consensus 143 kGnIrV~~RVRPl~~~E----~~~~v~~~d~~tI~v~~~~---~~~~~~~k~F~FD~VF~~~-------asQ~eVF~eV- 207 (1037)
..+|||.|||||++..| ..+++++....++.-.++. ....+.+++|.||++|.+. +.|+.||+.+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 46899999999998776 2456676665555443332 1233567999999999875 5799999998
Q ss_pred HHhHHhhhcCCccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCC
Q 001652 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQ 287 (1037)
Q Consensus 208 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~ 287 (1037)
.-+|+++|+|||+||||||||||||||||+|..+++|||||+++.||..|.....+...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 67999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred CCCC-ceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeec--cC--Cce
Q 001652 288 TGNG-LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL--IT--GEN 356 (1037)
Q Consensus 288 ~~~~-~~~i~~~~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~--~~--g~~ 356 (1037)
.++. ..+++.+. ..++.||.+..|+|++++..+|..|.++|+++.|+ |||||+||.|.|.+.-. .+ ...
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 7654 33444443 35677999999999999999999999999999886 88999999999987632 22 234
Q ss_pred eeeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhcc------CCCCCCCCCCccccccccccCCCcce
Q 001652 357 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESSKT 430 (1037)
Q Consensus 357 ~~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~------k~~hIPYRdSKLTrLLqdSLGGnSkT 430 (1037)
..|+|.|||||||||+.++++.|.|++|+.+||+||.+||.||++|++ +..+||||||-||.||+|+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 579999999999999999999999999999999999999999999986 24589999999999999999999999
Q ss_pred eEEEeeCCCCCCHHHHHhHhHHHHHhhhcccccCcchhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 001652 431 LMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN-D 509 (1037)
Q Consensus 431 lmI~~ISPs~~~~~ETLsTLrFAsRar~I~~~~~n~~~i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~-~ 509 (1037)
+||+||||++++|+||++|||||.|||.|++. ..++ ......-|.+|++|++.|+.+|..++ .
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~----avvN------------edpnarvirElReEve~lr~qL~~ae~~ 386 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNH----AVVN------------EDPNARVIRELREEVEKLREQLEQAEAM 386 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhcc----cccc------------CCchHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999998632 1111 12344567888888888888887632 2
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001652 510 QCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQV 557 (1037)
Q Consensus 510 q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql 557 (1037)
+...+.+.+++..+ -+++...-|++++....+.+.+.+.++
T Consensus 387 ~~~el~e~l~esek-------li~ei~~twEEkl~ktE~in~erq~~L 427 (1714)
T KOG0241|consen 387 KLPELKEKLEESEK-------LIKEITVTWEEKLRKTEEINQERQAQL 427 (1714)
T ss_pred cchHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333322 233334445555555444444444443
No 14
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.2e-69 Score=601.99 Aligned_cols=305 Identities=32% Similarity=0.526 Sum_probs=270.0
Q ss_pred CEEEEEeeCCCCCCC--CCceEeecCC-----cEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhc-hHHhHHhhhc
Q 001652 145 NIKVFCRTRPLFEDE--GPSVVEFTDD-----CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALD 216 (1037)
Q Consensus 145 nIrV~~RVRPl~~~E--~~~~v~~~d~-----~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~svLd 216 (1037)
||+|+|||||+.+.| ...++...++ ..+.+..+.. ....+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~--~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRN--RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCC--CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 799999999998766 3345555444 4666665432 2345899999999999999999998 6999999999
Q ss_pred CCccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEE
Q 001652 217 GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR 296 (1037)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~i~ 296 (1037)
|||+||||||||||||||||+|+..++|||||++++||+.++.. .+.|.|.+||+|||||.|+|||++..... .++
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i~ 154 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ---AWTGAFSMSYYEIYNEKVYDLLEPAKKEL-PIR 154 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc---cccceEEEEEEEEECCEeeEccCCCCCCc-eEE
Confidence 99999999999999999999999999999999999999987643 37899999999999999999998865443 333
Q ss_pred ec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCCceeeeeEEEEEecCCc
Q 001652 297 LQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSE 370 (1037)
Q Consensus 297 ~~--~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g~~~~SkL~LVDLAGSE 370 (1037)
.+ ....+.++++..|.+.+++..++..|.++|..+.+. |||||+||+|+|.+.+. .....|+|+||||||||
T Consensus 155 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLAGsE 232 (319)
T cd01376 155 EDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLAGSE 232 (319)
T ss_pred EcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECCCCC
Confidence 33 334577999999999999999999999999887764 89999999999988754 23678999999999999
Q ss_pred cccccCCccchhHHHHHhhhhHHHHHHHHHhhccCCCCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHHhHh
Q 001652 371 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 450 (1037)
Q Consensus 371 R~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsTL 450 (1037)
|..+++..|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||...+++||++||
T Consensus 233 ~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (319)
T cd01376 233 DNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTL 312 (319)
T ss_pred cccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 001652 451 NFSSRAR 457 (1037)
Q Consensus 451 rFAsRar 457 (1037)
+||+|||
T Consensus 313 ~fa~r~~ 319 (319)
T cd01376 313 NFASRSK 319 (319)
T ss_pred HHHHhhC
Confidence 9999985
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3e-69 Score=601.80 Aligned_cols=310 Identities=38% Similarity=0.579 Sum_probs=280.2
Q ss_pred CCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhch-HHhHHhhhcCC
Q 001652 144 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 218 (1037)
Q Consensus 144 GnIrV~~RVRPl~~~E----~~~~v~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~eV-~pLV~svLdGy 218 (1037)
.+|+|+|||||+.+.| ...++.+.++.+|.+..+. ..+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD-----DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCC-----CceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 4899999999998776 4578888888888887642 348999999999999999999985 99999999999
Q ss_pred ccceeeeccCCCCcccccccCCC---CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEE
Q 001652 219 NVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 295 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~Gs~~---~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~i 295 (1037)
|+||||||||||||||||+|+.. ++||+||++++||+.+... ....+|.|.+||+|||||.++|||++........
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~ 155 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVH 155 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCccCCceEE
Confidence 99999999999999999999987 8999999999999988754 3466899999999999999999998875543322
Q ss_pred Eec-ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCCceeeeeEEEEEecCCc
Q 001652 296 RLQ-SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSE 370 (1037)
Q Consensus 296 ~~~-~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g~~~~SkL~LVDLAGSE 370 (1037)
... ....+.+++++.|.|.+++..++..|.++|....+. |||||+||+|+|.+.+...+....|+|+||||||||
T Consensus 156 ~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE 235 (325)
T cd01369 156 EDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSE 235 (325)
T ss_pred EcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCC
Confidence 222 234567999999999999999999999999887763 899999999999998877777889999999999999
Q ss_pred cccccCCccchhHHHHHhhhhHHHHHHHHHhhccCC-CCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHHhH
Q 001652 371 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1037)
Q Consensus 371 R~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~-~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsT 449 (1037)
|..+++.+|.+++|+..||+||++|++||.+|++++ .||||||||||+||+|+|||+|+|+||+||+|...+++||++|
T Consensus 236 ~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~T 315 (325)
T cd01369 236 KVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLST 315 (325)
T ss_pred cccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHH
Confidence 999999999999999999999999999999999977 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhc
Q 001652 450 LNFSSRARST 459 (1037)
Q Consensus 450 LrFAsRar~I 459 (1037)
|+||+|||+|
T Consensus 316 L~~a~r~~~i 325 (325)
T cd01369 316 LRFGARAKTI 325 (325)
T ss_pred HHHHHHhhcC
Confidence 9999999875
No 16
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3e-69 Score=604.16 Aligned_cols=314 Identities=36% Similarity=0.543 Sum_probs=277.7
Q ss_pred CCEEEEEeeCCCCCCCC----CceEee-cCCcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhc-hHHhHHhhhcC
Q 001652 144 GNIKVFCRTRPLFEDEG----PSVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 217 (1037)
Q Consensus 144 GnIrV~~RVRPl~~~E~----~~~v~~-~d~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~svLdG 217 (1037)
.||+|+|||||+++.|. ..++.. ++..+|.+.++........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 38999999999987663 345554 4567788877655445667899999999999999999998 59999999999
Q ss_pred CccceeeeccCCCCcccccccCCC---CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceE
Q 001652 218 YNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 294 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~~---~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~ 294 (1037)
||+||||||||||||||||+|+.. ++|||||++++||+.+.... ...|.|.+||+|||||+|+|||.+.......
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~ 158 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE--NVQFLVRVSYLEIYNEEVRDLLGKDQKKKLE 158 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc--CccEEEEEEEEEeeCCeeeeCCCCCCCCcee
Confidence 999999999999999999999887 89999999999999887543 3789999999999999999999887644444
Q ss_pred EEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeecc---CCceeeeeEEEEE
Q 001652 295 IRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLSLVD 365 (1037)
Q Consensus 295 i~~~~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~---~g~~~~SkL~LVD 365 (1037)
++.+. ...+.+++++.|.+.+++..++..|.++|..+.+. |||||+||+|+|.+.+.. .+....|+|+|||
T Consensus 159 i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VD 238 (333)
T cd01371 159 LKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVD 238 (333)
T ss_pred EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEE
Confidence 44432 34567999999999999999999999999887764 899999999999987664 3345679999999
Q ss_pred ecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCCC-CCCCCCCccccccccccCCCcceeEEEeeCCCCCCHH
Q 001652 366 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1037)
Q Consensus 366 LAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~-hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ 444 (1037)
||||||..+++..|.+++|+..||+||.+|++||.+|+.++. |||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 239 LAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~ 318 (333)
T cd01371 239 LAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYD 318 (333)
T ss_pred CCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 999999999999999999999999999999999999998775 9999999999999999999999999999999999999
Q ss_pred HHHhHhHHHHHhhhc
Q 001652 445 ETLSSLNFSSRARST 459 (1037)
Q Consensus 445 ETLsTLrFAsRar~I 459 (1037)
||++||+||+|||.|
T Consensus 319 eTl~TL~fa~r~r~I 333 (333)
T cd01371 319 ETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999875
No 17
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.9e-69 Score=601.52 Aligned_cols=315 Identities=45% Similarity=0.697 Sum_probs=285.5
Q ss_pred CCCEEEEEeeCCCCCCC---CCceEeecCC--cEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhchHHhHHhhhcC
Q 001652 143 KGNIKVFCRTRPLFEDE---GPSVVEFTDD--CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDG 217 (1037)
Q Consensus 143 kGnIrV~~RVRPl~~~E---~~~~v~~~d~--~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdG 217 (1037)
+|+|+|+||+||+.+.| ...++.++++ .+|.+..+ ....+.|.||+||+++++|++||+.|+|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 69999999999998886 4567777766 67777643 234589999999999999999999999999999999
Q ss_pred CccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC--CCceEE
Q 001652 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKI 295 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~--~~~~~i 295 (1037)
+|+||||||+|||||||||+|+..++||+||++++||+.++.....+..|.|.+||+|||||+++|||.+.. .....+
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i 156 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEI 156 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEE
Confidence 999999999999999999999999999999999999999887655578999999999999999999999863 333444
Q ss_pred Eecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCCceeeeeEEEEEecCC
Q 001652 296 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 369 (1037)
Q Consensus 296 ~~~~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g~~~~SkL~LVDLAGS 369 (1037)
+.+. ...+.+++.+.|.+++++..++..|.++|....+. |||||+||+|+|.+.+...+....|+|+|||||||
T Consensus 157 ~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGs 236 (329)
T cd01366 157 KHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGS 236 (329)
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCC
Confidence 4433 34567899999999999999999999999887664 89999999999999887777888999999999999
Q ss_pred ccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCCCCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHHhH
Q 001652 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1037)
Q Consensus 370 ER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsT 449 (1037)
|+..+.+..|.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++||++|
T Consensus 237 E~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~t 316 (329)
T cd01366 237 ERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCS 316 (329)
T ss_pred cccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhccc
Q 001652 450 LNFSSRARSTVL 461 (1037)
Q Consensus 450 LrFAsRar~I~~ 461 (1037)
|+||+|+++|++
T Consensus 317 L~~a~~~~~i~~ 328 (329)
T cd01366 317 LRFASRVRSVEL 328 (329)
T ss_pred HHHHHHhhcccC
Confidence 999999999864
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=5.7e-69 Score=598.78 Aligned_cols=306 Identities=34% Similarity=0.537 Sum_probs=274.5
Q ss_pred CEEEEEeeCCCCCCC---CCceEeecCCcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhch-HHhHHhhhcCCcc
Q 001652 145 NIKVFCRTRPLFEDE---GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 220 (1037)
Q Consensus 145 nIrV~~RVRPl~~~E---~~~~v~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~eV-~pLV~svLdGyN~ 220 (1037)
||+|+||+||+...| ...++.+.++.+|.+..+ ...+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 799999999998875 356777777767776544 3458999999999999999999984 9999999999999
Q ss_pred ceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEecc-
Q 001652 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS- 299 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~i~~~~- 299 (1037)
||||||||||||||||+|+..++|||||++++||+.+.... ...|.|.+||+|||||+|+|||.+..... .+..+.
T Consensus 76 ~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l-~i~~~~~ 152 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP--DREFLLRVSYLEIYNEKIKDLLSPSPQEL-RIREDPN 152 (321)
T ss_pred eEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc--CceEEEEEEEEEEEcCEeEEccCCCCCCc-eEEECCC
Confidence 99999999999999999999999999999999999886533 66899999999999999999999886443 333332
Q ss_pred -cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccC---CceeeeeEEEEEecCCcc
Q 001652 300 -LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEG 371 (1037)
Q Consensus 300 -~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~---g~~~~SkL~LVDLAGSER 371 (1037)
...+.+++++.|.+++++..++..|.++|..+.|. |||||+||+|+|.+.+... +....|+|+|||||||||
T Consensus 153 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~ 232 (321)
T cd01374 153 KGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSER 232 (321)
T ss_pred CCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCc
Confidence 34577999999999999999999999999887664 8999999999999887654 556789999999999999
Q ss_pred ccccCCccchhHHHHHhhhhHHHHHHHHHhhccCC--CCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHHhH
Q 001652 372 LIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1037)
Q Consensus 372 ~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~--~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsT 449 (1037)
..+.+ .|.+++|+.+||+||++|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+||||...+++||++|
T Consensus 233 ~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~T 311 (321)
T cd01374 233 ASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNT 311 (321)
T ss_pred cccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHH
Confidence 99988 99999999999999999999999999975 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhc
Q 001652 450 LNFSSRARST 459 (1037)
Q Consensus 450 LrFAsRar~I 459 (1037)
|+||+|+++|
T Consensus 312 L~~a~r~~~i 321 (321)
T cd01374 312 LKFASRAKKV 321 (321)
T ss_pred HHHHHHHhcC
Confidence 9999999874
No 19
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.8e-68 Score=601.70 Aligned_cols=316 Identities=35% Similarity=0.498 Sum_probs=276.2
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCC-cEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhc-hHHhHHhhhcC
Q 001652 144 GNIKVFCRTRPLFEDEG----PSVVEFTDD-CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 217 (1037)
Q Consensus 144 GnIrV~~RVRPl~~~E~----~~~v~~~d~-~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~svLdG 217 (1037)
+||+|+||+||+.+.|. ..++...++ .+|.+.++.. .....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 59999999999987662 356777655 6677665432 23356899999999999999999998 59999999999
Q ss_pred CccceeeeccCCCCcccccccCC-----------CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccC
Q 001652 218 YNVSIFAYGQTHSGKTHTMEGSS-----------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP 286 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~-----------~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~ 286 (1037)
||+||||||||||||||||+|+. .++|||||++++||+.+... ...|.|.+||+|||||+|+|||+
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~ 157 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELFDLLS 157 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeeeeCCC
Confidence 99999999999999999999974 34899999999999988753 56899999999999999999998
Q ss_pred CCC--CCceEEEec----ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccC---
Q 001652 287 QTG--NGLAKIRLQ----SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT--- 353 (1037)
Q Consensus 287 ~~~--~~~~~i~~~----~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~--- 353 (1037)
+.. .....+..+ ....+.++++..|.+.+++..+++.|.++|..+.|. |||||+||+|+|.+.....
T Consensus 158 ~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~ 237 (352)
T cd01364 158 SESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGE 237 (352)
T ss_pred CccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCC
Confidence 874 223334333 234567999999999999999999999999887764 8999999999998875432
Q ss_pred CceeeeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCCCCCCCCCCccccccccccCCCcceeEE
Q 001652 354 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMI 433 (1037)
Q Consensus 354 g~~~~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~hIPYRdSKLTrLLqdSLGGnSkTlmI 433 (1037)
.....|+|+|||||||||..+.++.+.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||
T Consensus 238 ~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I 317 (352)
T cd01364 238 ELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSII 317 (352)
T ss_pred ccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 22357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHhHhHHHHHhhhccccc
Q 001652 434 VNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1037)
Q Consensus 434 ~~ISPs~~~~~ETLsTLrFAsRar~I~~~~ 463 (1037)
+||||...+++||++||+||+|+++|++.|
T Consensus 318 ~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P 347 (352)
T cd01364 318 ATISPASINLEETLSTLEYAHRAKNIKNKP 347 (352)
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 999999999999999999999999987544
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=5.4e-68 Score=594.32 Aligned_cols=310 Identities=37% Similarity=0.491 Sum_probs=273.2
Q ss_pred CEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCCCC------CCCceeecceeeCCCCChhhHHhch-HHhHHhhhcC
Q 001652 145 NIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTIS------NPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDG 217 (1037)
Q Consensus 145 nIrV~~RVRPl~~~E~~~~v~~~d~~tI~v~~~~~~~~------~~~k~F~FD~VF~~~asQ~eVF~eV-~pLV~svLdG 217 (1037)
.|+|+||+||+...+...+...+++..+.+..++.... ...+.|.||+||++ ++|++||+.+ .|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G 79 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDG 79 (334)
T ss_pred CeEEEEECCCCCCCCCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 48999999999987766666667778887776654322 23468999999999 9999999986 8999999999
Q ss_pred CccceeeeccCCCCcccccccCC---CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCC----
Q 001652 218 YNVSIFAYGQTHSGKTHTMEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN---- 290 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~---~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~---- 290 (1037)
||+||||||||||||||||+|+. .++|||||++++||+.++.. .+..|.|.+||+|||||+|+|||++...
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~ 157 (334)
T cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR--ATKTYTVHVSYLEIYNEQLYDLLGDTPEALES 157 (334)
T ss_pred CccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc--cCcceEEEEEEEEEECCEeecCCCCCcccccc
Confidence 99999999999999999999976 47899999999999998753 4668999999999999999999988742
Q ss_pred -CceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEee--ccCCceeeeeE
Q 001652 291 -GLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNN--LITGENLYSKL 361 (1037)
Q Consensus 291 -~~~~i~~~--~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~--~~~g~~~~SkL 361 (1037)
....++.+ ....+.+++++.|.+++++..++..|..+|....+. |||||+||+|+|.+.+ ........|+|
T Consensus 158 ~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l 237 (334)
T cd01375 158 LPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKL 237 (334)
T ss_pred CCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEE
Confidence 22334433 334567899999999999999999999999887664 8999999999999873 34445678999
Q ss_pred EEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCC-CCCCCCCCccccccccccCCCcceeEEEeeCCCC
Q 001652 362 SLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNA 440 (1037)
Q Consensus 362 ~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~-~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~ 440 (1037)
+|||||||||..+++..|.+++|+..||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||||..
T Consensus 238 ~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~ 317 (334)
T cd01375 238 NLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEP 317 (334)
T ss_pred EEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCch
Confidence 999999999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred CCHHHHHhHhHHHHHhh
Q 001652 441 ANMSETLSSLNFSSRAR 457 (1037)
Q Consensus 441 ~~~~ETLsTLrFAsRar 457 (1037)
.+++||++||+||+|++
T Consensus 318 ~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 318 SNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999999999999984
No 21
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.1e-67 Score=590.30 Aligned_cols=307 Identities=34% Similarity=0.536 Sum_probs=268.3
Q ss_pred CEEEEEeeCCCCCCCCC----ceEeecC-CcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhch-HHhHHhhhcCC
Q 001652 145 NIKVFCRTRPLFEDEGP----SVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 218 (1037)
Q Consensus 145 nIrV~~RVRPl~~~E~~----~~v~~~d-~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~eV-~pLV~svLdGy 218 (1037)
+|+|+||+||+.+.|.. .++.+.+ +..+.+.+ .+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999877632 3343322 23333321 48899999999999999999985 89999999999
Q ss_pred ccceeeeccCCCCcccccccCC------CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC--C
Q 001652 219 NVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--N 290 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~Gs~------~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~--~ 290 (1037)
|+||||||||||||||||+|+. .++|||||++++||+.++... ...+|.|.|||+|||||+|+|||.+.. .
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 152 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKK-DEPDFQLKVSFLELYNEEVRDLLSPSTSEK 152 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhcc-ccceEEEEEEEEEeECCeeecCCCCcccCC
Confidence 9999999999999999999974 579999999999999987643 357899999999999999999998874 3
Q ss_pred CceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeecc----------CC
Q 001652 291 GLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----------TG 354 (1037)
Q Consensus 291 ~~~~i~~~~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~----------~g 354 (1037)
....++.+. ...+.+++++.|.+.+++..++..|.++|....+. |||||+||+|+|.+.+.. ..
T Consensus 153 ~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 153 SPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 344454433 34567999999999999999999999999887764 899999999999988763 33
Q ss_pred ceeeeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCC---CCCCCCCCccccccccccCCCccee
Q 001652 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTL 431 (1037)
Q Consensus 355 ~~~~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~---~hIPYRdSKLTrLLqdSLGGnSkTl 431 (1037)
....|+|+||||||||+..+++.+|.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~ 312 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTL 312 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEE
Confidence 4678999999999999999999999999999999999999999999999866 7999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHhHhHHHHHhhhcc
Q 001652 432 MIVNICPNAANMSETLSSLNFSSRARSTV 460 (1037)
Q Consensus 432 mI~~ISPs~~~~~ETLsTLrFAsRar~I~ 460 (1037)
||+||||...+++||++||+||+|||+|+
T Consensus 313 ~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 313 MIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999873
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=8.3e-66 Score=573.33 Aligned_cols=312 Identities=38% Similarity=0.585 Sum_probs=282.9
Q ss_pred CEEEEEeeCCCCCCC---CCceEeecCCcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhch-HHhHHhhhcCCcc
Q 001652 145 NIKVFCRTRPLFEDE---GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 220 (1037)
Q Consensus 145 nIrV~~RVRPl~~~E---~~~~v~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~eV-~pLV~svLdGyN~ 220 (1037)
+|+||||+||+...| .+.++.+.++.+|.+.++........+.|.||+||+++++|++||+.+ .|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999998764 678889888889999877654555679999999999999999999985 7999999999999
Q ss_pred ceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCC--CCCceEEEec
Q 001652 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT--GNGLAKIRLQ 298 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~--~~~~~~i~~~ 298 (1037)
||||||+|||||||||+|+..++|||||++++||+.+.........|.|.+||+|||||+|+|||.+. ... ..++.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~-l~i~~~ 159 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKP-LSLRED 159 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCC-cEEEEc
Confidence 99999999999999999999999999999999999987654446789999999999999999999986 333 334433
Q ss_pred c--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCCc--eeeeeEEEEEecCCc
Q 001652 299 S--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE--NLYSKLSLVDLAGSE 370 (1037)
Q Consensus 299 ~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g~--~~~SkL~LVDLAGSE 370 (1037)
. ...+.+++++.|.|.+++..++..|.++|....+. |||||+||+|+|...+..... ...|+|+||||||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse 239 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCC
Confidence 2 45677999999999999999999999999887664 799999999999998876654 778999999999999
Q ss_pred cccccCCccchhHHHHHhhhhHHHHHHHHHhhccCC--CCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHHh
Q 001652 371 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448 (1037)
Q Consensus 371 R~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~--~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLs 448 (1037)
+....+..+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|+|+++|+||+||+|...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhh
Q 001652 449 SLNFSSRAR 457 (1037)
Q Consensus 449 TLrFAsRar 457 (1037)
||+||+|||
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999985
No 23
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-65 Score=592.78 Aligned_cols=322 Identities=29% Similarity=0.445 Sum_probs=281.2
Q ss_pred cCCCCEEEEEeeCCCC-CCCCCceEeecCCcEEEEecCCCCC-------CCCCceeecceeeCCCCChhhHHhch-HHhH
Q 001652 141 TAKGNIKVFCRTRPLF-EDEGPSVVEFTDDCTIRVNTGDDTI-------SNPKKDFEFDRVYGPHVGQAELFSDV-QPFV 211 (1037)
Q Consensus 141 elkGnIrV~~RVRPl~-~~E~~~~v~~~d~~tI~v~~~~~~~-------~~~~k~F~FD~VF~~~asQ~eVF~eV-~pLV 211 (1037)
+.+..|.||||+||+. ..++..++.+.++.+|.+..|.... ....+.|.|.+||+|+++|.+||+.+ .|+|
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV 107 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLV 107 (809)
T ss_pred hhhcchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHH
Confidence 5678899999999988 5566778888899999988664322 22347899999999999999999985 9999
Q ss_pred HhhhcCCccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccC-------------------------------
Q 001652 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD------------------------------- 260 (1037)
Q Consensus 212 ~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~------------------------------- 260 (1037)
.+++.|.|..+|+||.|||||||||+|++.++||+||+++.||..++..
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~ 187 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREA 187 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999543210
Q ss_pred --------------------------------cccccccceeEEEEEEechhhhcccCCCCCCce-----EEE--ecccc
Q 001652 261 --------------------------------TTATARFNFAVTVFELYNEQLRELLPQTGNGLA-----KIR--LQSLE 301 (1037)
Q Consensus 261 --------------------------------~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~-----~i~--~~~~~ 301 (1037)
-+.+..|.|+|||+|||||.|||||.+.+.... .++ .....
T Consensus 188 ~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~ 267 (809)
T KOG0247|consen 188 MLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNM 267 (809)
T ss_pred ccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCe
Confidence 013456899999999999999999987643211 122 23345
Q ss_pred cceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeecc--CCceeeeeEEEEEecCCcccccc
Q 001652 302 SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TGENLYSKLSLVDLAGSEGLIAE 375 (1037)
Q Consensus 302 ~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~--~g~~~~SkL~LVDLAGSER~~ks 375 (1037)
.+.|++.+.|.+.+|+.++|..|.++|+.++|. |||||+||+|.+.+.+.. .+....|.|.|||||||||..++
T Consensus 268 ~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rt 347 (809)
T KOG0247|consen 268 YVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRT 347 (809)
T ss_pred eeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccc
Confidence 688999999999999999999999999999885 999999999999887665 45567899999999999999999
Q ss_pred CCccchhHHHHHhhhhHHHHHHHHHhhccC-----CCCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHHhHh
Q 001652 376 DDSGERITDVLHVMKSLSALGDVLSSLTSR-----KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 450 (1037)
Q Consensus 376 ~~~G~rlkEa~~INkSLsaLg~VI~ALs~k-----~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsTL 450 (1037)
++.|.||+||++||.||++||.||.+|+.+ +.+|||||||||++++++|.|..+.+||+||+|...+|+|+++.|
T Consensus 348 q~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vl 427 (809)
T KOG0247|consen 348 QNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVL 427 (809)
T ss_pred cchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHH
Confidence 999999999999999999999999999863 379999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccc
Q 001652 451 NFSSRARSTVLS 462 (1037)
Q Consensus 451 rFAsRar~I~~~ 462 (1037)
+||+-+..|.+.
T Consensus 428 kFaeiaq~v~v~ 439 (809)
T KOG0247|consen 428 KFAEIAQEVEVA 439 (809)
T ss_pred HHHHhccccccc
Confidence 999999998743
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.2e-64 Score=564.13 Aligned_cols=315 Identities=39% Similarity=0.594 Sum_probs=279.1
Q ss_pred CEEEEEeeCCCCCCC----CCceEeecCCc--EEEEecCCCCCCCCCceeecceeeCCCCChhhHHhch-HHhHHhhhcC
Q 001652 145 NIKVFCRTRPLFEDE----GPSVVEFTDDC--TIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDG 217 (1037)
Q Consensus 145 nIrV~~RVRPl~~~E----~~~~v~~~d~~--tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~eV-~pLV~svLdG 217 (1037)
+|+|+|||||+...| .+.++.+.++. +|.+..+. .....+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK--NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC--CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 699999999998776 34677776554 66665432 334568999999999999999999985 8999999999
Q ss_pred CccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEe
Q 001652 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL 297 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~i~~ 297 (1037)
+|+|||+||+|||||||||+|+.+++||+||++++||+.+.... ....|.|++||+|||||+++|||.+.... ..++.
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~-~~~~~~v~~S~~ei~~e~v~DLL~~~~~~-l~i~~ 156 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLE-EGWQFQVKVSYLEIYNEKIRDLLNPSPKK-LEIRE 156 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcc-cCceEEEEEEEEEEECCEEEECcCCCCCC-cEEEE
Confidence 99999999999999999999999999999999999999886533 36789999999999999999999887544 33443
Q ss_pred cc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEe--eccCCceeeeeEEEEEecCC
Q 001652 298 QS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYN--NLITGENLYSKLSLVDLAGS 369 (1037)
Q Consensus 298 ~~--~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~--~~~~g~~~~SkL~LVDLAGS 369 (1037)
+. ...+.+++++.|.|++++..++..|..+|....+. |||||+||+|+|.+. +...+....|+|+|||||||
T Consensus 157 ~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGs 236 (335)
T smart00129 157 DKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGS 236 (335)
T ss_pred CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCC
Confidence 33 34677899999999999999999999999877664 899999999999966 55566678999999999999
Q ss_pred ccccccCCccchhHHHHHhhhhHHHHHHHHHhhcc--CCCCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHH
Q 001652 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 447 (1037)
Q Consensus 370 ER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~--k~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETL 447 (1037)
|+....+..|.+++|+..||+||.+|++||.+|++ +..|||||+||||+||+++|+|+++|+||+||+|...+++||+
T Consensus 237 e~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl 316 (335)
T smart00129 237 ERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETL 316 (335)
T ss_pred CccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHH
Confidence 99999999999999999999999999999999998 6789999999999999999999999999999999999999999
Q ss_pred hHhHHHHHhhhccccc
Q 001652 448 SSLNFSSRARSTVLSL 463 (1037)
Q Consensus 448 sTLrFAsRar~I~~~~ 463 (1037)
+||+||+++++|+..+
T Consensus 317 ~tL~~a~~~~~i~~~p 332 (335)
T smart00129 317 STLRFASRAKEIKNKA 332 (335)
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999999999987655
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.2e-64 Score=562.17 Aligned_cols=309 Identities=38% Similarity=0.569 Sum_probs=261.5
Q ss_pred eeCCCCCCCC----CceEeecC-CcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhc-hHHhHHhhhcCCccceee
Q 001652 151 RTRPLFEDEG----PSVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNVSIFA 224 (1037)
Q Consensus 151 RVRPl~~~E~----~~~v~~~d-~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~svLdGyN~~IfA 224 (1037)
||||+++.|. ...+...+ .................+.|.||+||+++++|++||+. +.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 8999986652 12222221 11111222222333456899999999999999999998 599999999999999999
Q ss_pred eccCCCCcccccccC--CCCCChHHHHHHHHHHhhccCccc-ccccceeEEEEEEechhhhcccCCCC---CCceEEEec
Q 001652 225 YGQTHSGKTHTMEGS--SHDRGLYARCFEELFDLSNSDTTA-TARFNFAVTVFELYNEQLRELLPQTG---NGLAKIRLQ 298 (1037)
Q Consensus 225 YGQTGSGKTyTM~Gs--~~~~GIIpRal~~LF~~i~~~~~~-~~~~~V~VS~lEIYNE~I~DLL~~~~---~~~~~i~~~ 298 (1037)
||+|||||||||+|+ ..++||+||++++||+.+...... ...|.|+|||+|||||+|+|||.+.. .....++.+
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 899999999999999998754332 46899999999999999999999874 233445544
Q ss_pred cc---ccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCCc----eeeeeEEEEEec
Q 001652 299 SL---ESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE----NLYSKLSLVDLA 367 (1037)
Q Consensus 299 ~~---~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g~----~~~SkL~LVDLA 367 (1037)
.. ..+.+++++.|.+.+++..++..|.++|....+. |||||+||+|+|.+.+..... ...|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 33 4677899999999999999999999999888775 899999999999998876554 478999999999
Q ss_pred CCccccccCC-ccchhHHHHHhhhhHHHHHHHHHhhccC--CCCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHH
Q 001652 368 GSEGLIAEDD-SGERITDVLHVMKSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1037)
Q Consensus 368 GSER~~ks~~-~G~rlkEa~~INkSLsaLg~VI~ALs~k--~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ 444 (1037)
|||+..+.+. .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 9999998886 4889999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHhHhHHHHHhhhc
Q 001652 445 ETLSSLNFSSRARST 459 (1037)
Q Consensus 445 ETLsTLrFAsRar~I 459 (1037)
||++||+||+++++|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999975
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-61 Score=547.31 Aligned_cols=316 Identities=26% Similarity=0.368 Sum_probs=273.0
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCCCC----CCCceeecceeeCCCCChhhHHhc-hHHhHHhh
Q 001652 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1037)
Q Consensus 144 GnIrV~~RVRPl~~~E~----~~~v~~~d~~tI~v~~~~~~~~----~~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~sv 214 (1037)
..|.|+||-||++..|. ..+|.+|..+.+.+.-+..... -.++.|.||++|++.++++.||.. ++|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 46999999999998873 4578888888888776543221 135899999999999999999997 69999999
Q ss_pred hcCCccceeeeccCCCCcccccccCC------CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCC
Q 001652 215 LDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT 288 (1037)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM~Gs~------~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~ 288 (1037)
|+|--+|+||||||||||||||.|+- ...||..++.+++|..+....-...++.|++||||||+.++||||+..
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k 367 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDK 367 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccc
Confidence 99999999999999999999998853 236999999999999887654456789999999999999999999874
Q ss_pred CCCceEEE-ecccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCc----ccceeEEEEEEEEEEeeccCCceeeeeEEE
Q 001652 289 GNGLAKIR-LQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLITGENLYSKLSL 363 (1037)
Q Consensus 289 ~~~~~~i~-~~~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t----~SSRSH~IftI~V~~~~~~~g~~~~SkL~L 363 (1037)
..- ..++ ......++||.+..|.+.++++++++.|...|+.+.| +|||||+||+|.+.... +....||+.|
T Consensus 368 ~KL-rvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hGKfSl 443 (676)
T KOG0246|consen 368 KKL-RVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHGKFSL 443 (676)
T ss_pred cce-EEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEeEEEE
Confidence 322 2222 2234568899999999999999999999999987766 49999999999987543 2467899999
Q ss_pred EEecCCcccccc-CCccchhHHHHHhhhhHHHHHHHHHhhccCCCCCCCCCCccccccccccCC-CcceeEEEeeCCCCC
Q 001652 364 VDLAGSEGLIAE-DDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGE-SSKTLMIVNICPNAA 441 (1037)
Q Consensus 364 VDLAGSER~~ks-~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~hIPYRdSKLTrLLqdSLGG-nSkTlmI~~ISPs~~ 441 (1037)
|||||+||-..+ .++.++-.|+..||+||+||..||.||..++.|+|||.||||++|+|||-| ||+|+||+||||...
T Consensus 444 IDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ 523 (676)
T KOG0246|consen 444 IDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGIS 523 (676)
T ss_pred EEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcc
Confidence 999999997654 556788899999999999999999999999999999999999999999988 999999999999999
Q ss_pred CHHHHHhHhHHHHHhhhccccc
Q 001652 442 NMSETLSSLNFSSRARSTVLSL 463 (1037)
Q Consensus 442 ~~~ETLsTLrFAsRar~I~~~~ 463 (1037)
+.+.||+|||||.|+++.....
T Consensus 524 ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 524 SCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred hhhhhHHHHHHHHHHHhhcCCC
Confidence 9999999999999999976543
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-59 Score=554.60 Aligned_cols=278 Identities=33% Similarity=0.476 Sum_probs=246.6
Q ss_pred CCceeecceeeCCCCChhhHHhc-hHHhHHhhhcCCccceeeeccCCCCcccccccC----CCCCChHHHHHHHHHHhhc
Q 001652 184 PKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGS----SHDRGLYARCFEELFDLSN 258 (1037)
Q Consensus 184 ~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs----~~~~GIIpRal~~LF~~i~ 258 (1037)
....|+||+||+...+|.++|+. |.|+++.+|+|||+|++|||||||||||||.+. .++.|||||++..+|..+.
T Consensus 30 ~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~ 109 (913)
T KOG0244|consen 30 KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIG 109 (913)
T ss_pred CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHH
Confidence 34889999999999999999997 699999999999999999999999999999876 2345999999999999987
Q ss_pred cCcccccccceeEEEEEEechhhhcccCCCCCCceEEEecc---cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc-
Q 001652 259 SDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK- 334 (1037)
Q Consensus 259 ~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~i~~~~---~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~- 334 (1037)
... ...|.|.|+|+||||+.|+|||.+...... +.... ...+.++++..|....+....|..|.-.|++++|.
T Consensus 110 ~~~--~~~f~i~vs~vely~e~v~dl~~~~~~~~~-i~~~e~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnM 186 (913)
T KOG0244|consen 110 KTE--SFVFRITVSFVELYNEEVLDLLKPSRLKAN-IKLREPKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNM 186 (913)
T ss_pred hhh--ccceeeeeeeeeccchhhhhhcChhhhhhc-eeccccCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 533 378999999999999999999985543222 33322 24567899999999999999999999999988774
Q ss_pred ---cceeEEEEEEEEEEeec-cCCceeeeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCCC--C
Q 001652 335 ---FNVSHLIIMIHIYYNNL-ITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD--I 408 (1037)
Q Consensus 335 ---SSRSH~IftI~V~~~~~-~~g~~~~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~--h 408 (1037)
|||||+||++.+.+... ......++||+|||||||||.++++++|+|++|+.+||.+|++||+||+||...+. |
T Consensus 187 N~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~ 266 (913)
T KOG0244|consen 187 NAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGE 266 (913)
T ss_pred chhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCc
Confidence 89999999999987543 33335679999999999999999999999999999999999999999999987654 9
Q ss_pred CCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHHhHhHHHHHhhhcccccC
Q 001652 409 VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1037)
Q Consensus 409 IPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsTLrFAsRar~I~~~~~ 464 (1037)
||||+||||+||||+||||+.|+||+||||+..++.||++||+||.||++|++.+.
T Consensus 267 vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~v 322 (913)
T KOG0244|consen 267 VPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPV 322 (913)
T ss_pred ccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999987643
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.1e-56 Score=525.13 Aligned_cols=315 Identities=31% Similarity=0.507 Sum_probs=270.9
Q ss_pred CCCCEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCCCCCCCceeecceeeCCCCChhhHHhc-hHHhHHhhhcCCcc
Q 001652 142 AKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNV 220 (1037)
Q Consensus 142 lkGnIrV~~RVRPl~~~E~~~~v~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~e-V~pLV~svLdGyN~ 220 (1037)
.-.+++++++..|-..++ ......+...+.+.... ..+|.||+||++.++|++||+. +.|+++++++||||
T Consensus 20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~ 91 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE--RLINTSKKSHVSLEKSK------EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNC 91 (568)
T ss_pred eecCceEEEeecCCCcch--heeeccccccccccccc------ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccc
Confidence 446788888888853332 12222233333222211 4789999999999999999998 69999999999999
Q ss_pred ceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEe--c
Q 001652 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL--Q 298 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~i~~--~ 298 (1037)
||||||||||||||||.|..+++||||+++.+||+.+..... +..|.|.+||+|||||+++|||.+.... ..++. .
T Consensus 92 TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~-~~~~~v~is~lEiYnEk~~DLl~~~~~~-~~~~~~~~ 169 (568)
T COG5059 92 TVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEES-LNIREDSL 169 (568)
T ss_pred eEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhccc-CcceeeEeehhHHHhhHHHhhccCcccc-ccccccCC
Confidence 999999999999999999999999999999999998876543 6789999999999999999999887654 12222 2
Q ss_pred ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccCCceeeeeEEEEEecCCccccc
Q 001652 299 SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIA 374 (1037)
Q Consensus 299 ~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~g~~~~SkL~LVDLAGSER~~k 374 (1037)
....+.+++...+.+.++++.+++.+..+|..+.+. |||||+||++++...+...+....++|+||||||||++..
T Consensus 170 ~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~ 249 (568)
T COG5059 170 LGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAAR 249 (568)
T ss_pred CceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccch
Confidence 234566899999999999999999999999988874 8999999999999998777766678999999999999999
Q ss_pred cCCccchhHHHHHhhhhHHHHHHHHHhhcc--CCCCCCCCCCccccccccccCCCcceeEEEeeCCCCCCHHHHHhHhHH
Q 001652 375 EDDSGERITDVLHVMKSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNF 452 (1037)
Q Consensus 375 s~~~G~rlkEa~~INkSLsaLg~VI~ALs~--k~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsTLrF 452 (1037)
++..+.+++|+..||+||.+||+||++|.. +..|||||+|||||||+++|||+++|.|||||+|...+++||.+||+|
T Consensus 250 ~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~ 329 (568)
T COG5059 250 TGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKF 329 (568)
T ss_pred hhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHH
Confidence 999999999999999999999999999997 788999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCcc
Q 001652 453 SSRARSTVLSLGNR 466 (1037)
Q Consensus 453 AsRar~I~~~~~n~ 466 (1037)
|+||++|...+...
T Consensus 330 a~rak~I~~~~~~~ 343 (568)
T COG5059 330 ASRAKSIKNKIQVN 343 (568)
T ss_pred HHHHhhcCCccccc
Confidence 99999998655443
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=3.8e-47 Score=393.17 Aligned_cols=172 Identities=44% Similarity=0.657 Sum_probs=161.8
Q ss_pred HHhchHHhHHhhhcCCccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhh
Q 001652 203 LFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLR 282 (1037)
Q Consensus 203 VF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~I~ 282 (1037)
||+.+.|+|+.+++|||+||||||||||||||||+|+..++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99997899999999999999999999999999999999999999999987
Q ss_pred cccCCCCCCceEEEecccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc----cceeEEEEEEEEEEeeccC---Cc
Q 001652 283 ELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GE 355 (1037)
Q Consensus 283 DLL~~~~~~~~~i~~~~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~----SSRSH~IftI~V~~~~~~~---g~ 355 (1037)
+..++..+..+|.++.|. |||||+||+|++.+.+... +.
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~ 103 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQ 103 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccc
Confidence 677888888888777764 8999999999999887654 55
Q ss_pred eeeeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCCCCCCCCCCccccccccccCCCcceeEEEe
Q 001652 356 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVN 435 (1037)
Q Consensus 356 ~~~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~hIPYRdSKLTrLLqdSLGGnSkTlmI~~ 435 (1037)
...++|+||||||||+..+++..+.+++|+..||+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||+|
T Consensus 104 ~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~ 183 (186)
T cd01363 104 PKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVAC 183 (186)
T ss_pred eeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 001652 436 ICP 438 (1037)
Q Consensus 436 ISP 438 (1037)
|||
T Consensus 184 vsP 186 (186)
T cd01363 184 ISP 186 (186)
T ss_pred eCc
Confidence 998
No 30
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=99.96 E-value=4.8e-32 Score=325.14 Aligned_cols=655 Identities=35% Similarity=0.373 Sum_probs=446.6
Q ss_pred ecCCCCCCCCCceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccccCCCCCChHHHHHHHHH
Q 001652 175 NTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELF 254 (1037)
Q Consensus 175 ~~~~~~~~~~~k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF 254 (1037)
+............+.|+.+..+...+..-+....+.+..++++++.. +|++|++.+.....|++.+....++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (670)
T KOG0239|consen 15 NTSDDTLSNPKKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELI 86 (670)
T ss_pred CcccccccccccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcc
Confidence 33334444556789999998887777777777777788888888776 8999999999999999999998888
Q ss_pred HhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEecccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCcc
Q 001652 255 DLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK 334 (1037)
Q Consensus 255 ~~i~~~~~~~~~~~V~VS~lEIYNE~I~DLL~~~~~~~~~i~~~~~~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t~ 334 (1037)
+........ ..++.|++.+.|++.........+..........+..........+..+...+..++......
T Consensus 87 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 158 (670)
T KOG0239|consen 87 DLANSDKTS--------NVVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDL 158 (670)
T ss_pred cccccCCCc--------hhHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccc
Confidence 765432221 167889999999987655433322222223333444555555666666666665555443332
Q ss_pred cceeEEEEEEEEEEeeccCCceeeeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhccCCCCCCCCCC
Q 001652 335 FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENS 414 (1037)
Q Consensus 335 SSRSH~IftI~V~~~~~~~g~~~~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs~k~~hIPYRdS 414 (1037)
++. .... ...++|+|+.+.......-+....+...+-.+...+...+.. ..
T Consensus 159 ~~~---------------~~~~---~~~~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~-----------~~ 209 (670)
T KOG0239|consen 159 SKV---------------TPEN---SLSLLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS-----------AQ 209 (670)
T ss_pred ccc---------------chhh---hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh-----------hH
Confidence 222 1111 111556666654433333233323332222222222222222 34
Q ss_pred ccccccccccCCCcceeEEEeeCCCCCCHHHHHhHhHHHHHhhhcccccCcchhhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 001652 415 MLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLK 494 (1037)
Q Consensus 415 KLTrLLqdSLGGnSkTlmI~~ISPs~~~~~ETLsTLrFAsRar~I~~~~~n~~~i~~~~~i~~~~~~el~~l~~eI~~Lk 494 (1037)
..++.|.+.++ .|+...+.+.. +........++|..|+
T Consensus 210 ~~~~~l~~~~~-------------------------~~~~~~~~~~~-----------------l~~~~~~~~~~i~~l~ 247 (670)
T KOG0239|consen 210 EERRVLADSLG-------------------------NYADLRRNIKP-----------------LEGLESTIKKKIQALQ 247 (670)
T ss_pred HHHHHHHHHhh-------------------------hhhhHHHhhhh-----------------hhhhhhHHHHHHHHHH
Confidence 45555555554 34444433321 1111223344489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 495 QEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQR 574 (1037)
Q Consensus 495 ~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~ 574 (1037)
.++..|+..+..+..++..+..+.+..++....+..++...+.++...+ .+++...++.+++.++...+....-.--..
T Consensus 248 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~ 326 (670)
T KOG0239|consen 248 QELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRVFCRVRPLL 326 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEEEEecCCC
Confidence 9999999999999999999989998888888777777777766666655 555555555555444431110000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 575 DSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKL 654 (1037)
Q Consensus 575 e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~~~KLEEel~k~d~~Ie~L~eEneKL 654 (1037)
.+++...+..+...... ....+..+....+ ..-....-.|........++....++..+.+.
T Consensus 327 ~~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~ 388 (670)
T KOG0239|consen 327 PSEKQRLQSKVIDTEEQ-----GEVQVDSPDKGDK-------------LEPQSFKFDKVFGPLASQDDVFEEVSPLVQSA 388 (670)
T ss_pred ccccccccccccccCCc-----ceeEeecCCCCCC-------------CccccceeeeecCCcccHHHHHHHHHHHHHHH
Confidence 00000000000000000 0000000000000 00012233456666777888889999999999
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCCCCccCccccccCCCCCCCCCCCCCCCCcccCCCCeeeeecCCccccccCCcchhhh
Q 001652 655 FDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLT 734 (1037)
Q Consensus 655 ~q~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~~r~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ks~~~~~kttpag~~~~ 734 (1037)
+|-..-+.=-++.|+....-.-..| ++.+| ...| .+..+.-+.+...+++-...+++|++|+.+
T Consensus 389 lDGYnVCIFAYGQTGSGKTyTM~G~-------------~~~~~-Giip--ral~~lF~~~~~~~~g~~y~~~~s~~EIYN 452 (670)
T KOG0239|consen 389 LDGYNVCIFAYGQTGSGKTYTMSGP-------------TPEDP-GIIP--RALEKLFRTITSLKSGWKYDKTVSMLEIYN 452 (670)
T ss_pred hcCcceeEEEecccCCCccccccCC-------------CcccC-CccH--HHHHHHHHHHHhhccCceEEeeeehhHHHH
Confidence 9987666444443332222100000 11112 2223 336666777788888778888999999999
Q ss_pred hhhcCCCCCC-cccchhhccchhhHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHhcCCcchhhhhhhhhhhHHHHHH
Q 001652 735 AALNDFNPEQ-YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRS 813 (1037)
Q Consensus 735 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1037)
.++.||.++. |.+.++|.+++|+.+|++.+++|+.|..++|.+|.+|.+..+++.+.+.|.+.+++|+|.+|+|.|+
T Consensus 453 e~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~-- 530 (670)
T KOG0239|consen 453 EAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI-- 530 (670)
T ss_pred HHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc--
Confidence 9999999999 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcCcccccccccchhhhhhccCCCCCCCCCCCCCCCCCCccccccccccceeccccccccchhhhhhhhccccccccc
Q 001652 814 LLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWR 893 (1037)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (1037)
++.+.+.+.|+.+|.+.|+++| .+++|+++.++.+.|..++.++......+.+.+ .+.++...++-.
T Consensus 531 -----~~~t~~~~~g~l~LVDLAGSER------~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~--k~~HiPyRNSKL 597 (670)
T KOG0239|consen 531 -----NELTGIRVTGVLNLVDLAGSER------VSKSGVTGERLKEAQNINKSLSALGDVISALAS--KRSHIPYRNSKL 597 (670)
T ss_pred -----ccCcccccccceeEeecccCcc------cCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh--cCCCCcccccch
Confidence 9999999999999999998877 677899999999999999999999888877777 444445699999
Q ss_pred cccccchhhhhHHHHhhhcccchhhhhhhccCChhHHHHHHHHHHhhccceeeeecCCCCCCccchhhhHHHHH
Q 001652 894 HQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAI 967 (1037)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1037)
.||.+..|. .+..+.-|+++|+..++++.|+|.+++++++|+|....+.+...|+++.+++..|+++..++|+
T Consensus 598 T~lLq~sLG-G~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (670)
T KOG0239|consen 598 TQLLQDSLG-GDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEKLSTAI 670 (670)
T ss_pred HHHhHhhhC-CccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhhhhhhhhcC
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999885
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.75 E-value=9.4e-11 Score=141.06 Aligned_cols=263 Identities=22% Similarity=0.213 Sum_probs=170.9
Q ss_pred hHHHhhhhhhhcccCCCCEEEEEeeCCCCCCC--CCceEeecC-----CcEEEEecCCCCCCCCCceeecceeeCCCCCh
Q 001652 128 LINEKKRLFNDLLTAKGNIKVFCRTRPLFEDE--GPSVVEFTD-----DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQ 200 (1037)
Q Consensus 128 ~~~eRrkLhN~l~elkGnIrV~~RVRPl~~~E--~~~~v~~~d-----~~tI~v~~~~~~~~~~~k~F~FD~VF~~~asQ 200 (1037)
+.+.+|.||+.+...+ +++|+|+|+|..... ......+.+ ..++..+.. .........|.||.+|.+...+
T Consensus 290 eskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~ 367 (568)
T COG5059 290 ESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-SDSSREIEEIKFDLSEDRSEIE 367 (568)
T ss_pred hhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-CcchHHHHHHHhhhhhhhhhhh
Confidence 4567899999999999 999999999987442 111111111 112222211 1122334789999999999999
Q ss_pred hhHHhchHHhHHhhhcCCccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechh
Q 001652 201 AELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQ 280 (1037)
Q Consensus 201 ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE~ 280 (1037)
..++.....+++..++| +++||++++|+++||. ....++..-.+...|..........+.+...+-+.++|-..
T Consensus 368 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 441 (568)
T COG5059 368 ILVFREQSQLSQSSLSG----IFAYMQSLKKETETLK--SRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDR 441 (568)
T ss_pred hHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhccc--chhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999994 23356666666888887777677778888888888888333
Q ss_pred hhcccCCCCCCceEEEe-ccc--ccceeeeeeccCCHHHHHHHHHHHHhhcCCCCc----ccceeEEEEEEEEEEeeccC
Q 001652 281 LRELLPQTGNGLAKIRL-QSL--ESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLIT 353 (1037)
Q Consensus 281 I~DLL~~~~~~~~~i~~-~~~--~~v~~L~~~~V~s~~e~~~lL~~g~~~R~~~~t----~SSRSH~IftI~V~~~~~~~ 353 (1037)
..+++............ ... .....+.........+..... .+...+....+ .++++|++|..+....+...
T Consensus 442 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 520 (568)
T COG5059 442 LLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSST 520 (568)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhh
Confidence 33333222111100000 000 000000000000000111111 12223333322 37789999988887665544
Q ss_pred CceeeeeEEEEEecCCccccccCCccchhHHHHHhhhhHHHHHHHHHhhc
Q 001652 354 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 403 (1037)
Q Consensus 354 g~~~~SkL~LVDLAGSER~~ks~~~G~rlkEa~~INkSLsaLg~VI~ALs 403 (1037)
+... ++.|||||+||. .+..-|.++++..++|++|..+++++.++.
T Consensus 521 ~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 521 KELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred HHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 4433 899999999999 999999999999999999999999998764
No 32
>PRK11637 AmiB activator; Provisional
Probab=96.89 E-value=0.081 Score=62.52 Aligned_cols=9 Identities=44% Similarity=0.165 Sum_probs=5.1
Q ss_pred cccccccch
Q 001652 821 LQSIMVSPV 829 (1037)
Q Consensus 821 ~~~~~~~~~ 829 (1037)
|++|.|.+=
T Consensus 378 ~~~~~v~~G 386 (428)
T PRK11637 378 NQSALVSVG 386 (428)
T ss_pred CCcCCCCCc
Confidence 556666553
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.66 E-value=0.29 Score=57.89 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001652 639 KRDALIE 645 (1037)
Q Consensus 639 k~d~~Ie 645 (1037)
++..+|.
T Consensus 244 ~L~~~I~ 250 (428)
T PRK11637 244 RLRDSIA 250 (428)
T ss_pred HHHHHHH
Confidence 3333333
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.36 E-value=0.51 Score=51.97 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=25.2
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001652 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKA 662 (1037)
Q Consensus 626 ~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~~ 662 (1037)
+....++.+....+++.+...+-.+..+.|+++-...
T Consensus 151 ~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~ 187 (239)
T COG1579 151 VAEIREEGQELSSKREELKEKLDPELLSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Confidence 4445556666666777777777777778888876554
No 35
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.14 E-value=1.7 Score=51.42 Aligned_cols=48 Identities=8% Similarity=-0.022 Sum_probs=30.1
Q ss_pred cccCCCCCCCCCCCCCCCCcccCCCCeeeeecCCc---cccccCCcchhhh
Q 001652 687 ARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSS---EKIKTTPAGEYLT 734 (1037)
Q Consensus 687 ~r~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ks~~---~~~kttpag~~~~ 734 (1037)
.-+.++.++++..-|+.|+++.-...+|.--..+- +.|=.|++|--.+
T Consensus 285 ~i~~t~~~~~~~G~l~~PV~G~il~rFG~~~~gg~~wkG~vi~a~~Ga~V~ 335 (420)
T COG4942 285 LISSTGGFGALRGQLAWPVTGRILRRFGQADGGGLRWKGMVIGASAGATVK 335 (420)
T ss_pred ccccccccccccCCcCCCCCCcHHHHhcccCCCCccccceEEecCCCCeee
Confidence 45666888999999999998766655554332221 1133677775443
No 36
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.02 E-value=1.2 Score=47.96 Aligned_cols=158 Identities=25% Similarity=0.288 Sum_probs=76.5
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHH
Q 001652 468 TIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEK 547 (1037)
Q Consensus 468 ~i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~k 547 (1037)
.|+.++.-..+.++.....++.+.++..|+..|..-+..+..+...+...+..-.+....+ ..++.....+...++..+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L-~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL-QNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555666666666666666666666555555554443322211111 112222223334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHH--------HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcc
Q 001652 548 EQNAQLRNQVAQLLQLEQEQK-------MQIQ--------QRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPA 612 (1037)
Q Consensus 548 e~~~eL~~ql~qlle~eeE~k-------~qlq--------q~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~ 612 (1037)
.+.+.+..++..+....+++. .+++ -++..+..+...++.-+.||.+.......
T Consensus 107 ~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nl----------- 175 (201)
T PF13851_consen 107 WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANL----------- 175 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------
Confidence 455555555544443333321 1111 12334444444444444444433332211
Q ss_pred cccccccCCCCCChhHHhHHHHHHHHHHHHHHHH
Q 001652 613 VSSVLRTTGDGMDSSAVSKKLEEELKKRDALIER 646 (1037)
Q Consensus 613 ~~~~~~~~~~~~~~a~~~~KLEEel~k~d~~Ie~ 646 (1037)
+..+...+..++++.+..+...|..
T Consensus 176 ---------dp~~~~~v~~~l~~~l~~KN~~I~~ 200 (201)
T PF13851_consen 176 ---------DPAALSQVSKKLEDVLDSKNQTIKD 200 (201)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1224567788999999888887764
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.00 E-value=0.52 Score=61.66 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=12.0
Q ss_pred eeeccCCCCccccc
Q 001652 223 FAYGQTHSGKTHTM 236 (1037)
Q Consensus 223 fAYGQTGSGKTyTM 236 (1037)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 45899999999876
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.85 E-value=0.96 Score=56.94 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 554 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1037)
Q Consensus 554 ~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe 589 (1037)
+.+..++..+...++.+++..++.+..++.++.+|+
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555444
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.82 E-value=1 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001652 634 EEELKKRDALIERLHEENEKLFD 656 (1037)
Q Consensus 634 EEel~k~d~~Ie~L~eEneKL~q 656 (1037)
+..++++|.+|..|+....++.-
T Consensus 635 ~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 635 QGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666655554444433
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.81 E-value=2.5 Score=46.72 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=25.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001652 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1037)
Q Consensus 626 ~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~ 660 (1037)
.......++++++..++..+.+..+.+.|...+..
T Consensus 140 ~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 140 LAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 45566788888888888888777777777666543
No 41
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.71 E-value=0.82 Score=59.89 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=6.0
Q ss_pred CHHHHHHHHHH
Q 001652 313 NPLEFSKVLKS 323 (1037)
Q Consensus 313 s~~e~~~lL~~ 323 (1037)
+..++..++..
T Consensus 118 ~~~~~~~~l~~ 128 (1164)
T TIGR02169 118 RLSEIHDFLAA 128 (1164)
T ss_pred cHHHHHHHHHH
Confidence 45566665543
No 42
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.68 E-value=1.4 Score=48.53 Aligned_cols=31 Identities=32% Similarity=0.553 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhc
Q 001652 631 KKLEEELKKRDAL---IERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 631 ~KLEEel~k~d~~---Ie~L~eEneKL~q~l~~~ 661 (1037)
.=||-+|-.++.+ +++|++|...|.|.|.-.
T Consensus 150 AfLESELdEke~llesvqRLkdEardlrqelavr 183 (333)
T KOG1853|consen 150 AFLESELDEKEVLLESVQRLKDEARDLRQELAVR 183 (333)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 467889988898888544
No 43
>PRK09039 hypothetical protein; Validated
Probab=95.62 E-value=0.84 Score=52.86 Aligned_cols=83 Identities=13% Similarity=0.226 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChhH
Q 001652 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSA 628 (1037)
Q Consensus 549 ~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~ 628 (1037)
+...+.+++......-.+..-++..++++|+.|+.++..|+..+......... ....+..
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~--------------------~~~~i~~ 176 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRE--------------------SQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHH
Confidence 33344444444444444444455555666666666666666666544443321 0114566
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 001652 629 VSKKLEEELKKRDALIERLHEEN 651 (1037)
Q Consensus 629 ~~~KLEEel~k~d~~Ie~L~eEn 651 (1037)
++.+|+..++++...+.+.+.+.
T Consensus 177 L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 177 LGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 67777777777666666555543
No 44
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.37 E-value=1.9 Score=54.47 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=49.5
Q ss_pred hccchhh--------HHHHHHHHHHHhccchhHh----HHHHHHHHHHHHHHh----------cCCcchhhhhhhhhhhH
Q 001652 751 ISDGANK--------LLMLVLAAVIKAGASREHE----ILAEIRDAVFAFIRK----------MEPTRVMDTMLVSRVRI 808 (1037)
Q Consensus 751 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 808 (1037)
++||.|- ++|-.++-+|-.|++--|- =..-+-|.+.-|+|- ---.+++|-|++-+
T Consensus 645 la~~~d~s~~i~~v~~fs~~~~~~~~na~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~--- 721 (980)
T KOG0980|consen 645 LADGDDASDLIHCVTLFSHLISTTINNAKATAYTASPEGSDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQ--- 721 (980)
T ss_pred cCCchhhhhHhhHHHHHHHHHHHHHhcchhheeccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHH---
Confidence 5666666 6666666666665543332 222333333333332 23467888886643
Q ss_pred HHHHHhhhcCccc----ccccccchhhhhhc
Q 001652 809 LYIRSLLARSPEL----QSIMVSPVECFLEK 835 (1037)
Q Consensus 809 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 835 (1037)
||--+..-.||| -+|++-|++.-|++
T Consensus 722 -~lq~~~~~~eel~~~~~di~~e~l~~lld~ 751 (980)
T KOG0980|consen 722 -YLQTLNQLGEELLPKELDIDQELLGNLLDI 751 (980)
T ss_pred -HHHHHHHHhHHhccccchhhHHHHHHHHHH
Confidence 788888889998 36777887777765
No 45
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.35 E-value=3.7 Score=45.87 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~ 597 (1037)
++-++..-...|+.|+.++..++.+|.....
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667788888888888877765333
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.30 E-value=4.9 Score=49.12 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 479 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYN 516 (1037)
Q Consensus 479 ~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~ 516 (1037)
+.+....++.+...|+.++..|+..+......+..+..
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~ 192 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQ 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555666666666666555555544443
No 47
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.15 E-value=2.1 Score=56.02 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=12.2
Q ss_pred cCCcchhhhhhhcCCCC
Q 001652 726 TTPAGEYLTAALNDFNP 742 (1037)
Q Consensus 726 ttpag~~~~~~~~~~~~ 742 (1037)
..-..+.|.+|+..|.|
T Consensus 970 l~~~i~~lg~aiee~~~ 986 (1179)
T TIGR02168 970 ARRRLKRLENKIKELGP 986 (1179)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 44456777888888877
No 48
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.12 E-value=1.8 Score=56.70 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=9.0
Q ss_pred ccccchhhhhHHHHhhhc
Q 001652 895 QVTGGKLREIQEEAKSFA 912 (1037)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~ 912 (1037)
+++||-. -...-|+.||
T Consensus 1089 ~lS~g~~-~~~~l~~~~~ 1105 (1179)
T TIGR02168 1089 LLSGGEK-ALTALALLFA 1105 (1179)
T ss_pred ccCccHH-HHHHHHHHHH
Confidence 4666653 3344555555
No 49
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.05 E-value=2.7 Score=53.30 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChhHHhHHHHHHHHHHHHH
Q 001652 564 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDAL 643 (1037)
Q Consensus 564 eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~~~KLEEel~k~d~~ 643 (1037)
+.+++.+++..+.++..|+..+++++.+++.+....+... +. .+....-.....+.+.+.|++..+.
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~-----~~--------~~~s~~L~~~Q~~~I~~iL~~~~~~ 700 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQK-----SP--------KKKSIVLSESQKRTIKEILKQQGEE 700 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cc--------cCCCccCCHHHHHHHHHHHHHHHHH
Confidence 5556667777777777788888887777765433222110 00 1111223556667777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 001652 644 IERLHEENEKLFDR 657 (1037)
Q Consensus 644 Ie~L~eEneKL~q~ 657 (1037)
|.++-.+...+...
T Consensus 701 I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 701 IDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHh
Confidence 76666665555443
No 50
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.88 E-value=4.6 Score=49.34 Aligned_cols=14 Identities=43% Similarity=0.437 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 001652 645 ERLHEENEKLFDRL 658 (1037)
Q Consensus 645 e~L~eEneKL~q~l 658 (1037)
+.|.+....|.+++
T Consensus 441 QeL~~yi~~Le~r~ 454 (546)
T PF07888_consen 441 QELLEYIERLEQRL 454 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555555
No 51
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.75 E-value=4.7 Score=46.00 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCC-CChhH
Q 001652 551 AQLRNQVAQLLQLEQEQKMQIQQ-RDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDG-MDSSA 628 (1037)
Q Consensus 551 ~eL~~ql~qlle~eeE~k~qlqq-~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~a~ 628 (1037)
+.|..++.++.+...++...+.+ .+..+..|+.+|..|+.+.........- ++.+. .-...
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~-----------------Lr~EKVdlEn~ 171 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELER-----------------LRREKVDLENT 171 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------------HHHHHHhHHHH
Confidence 45556666666555555555544 3345667777777776544211111110 11100 01122
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 629 VSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 629 ~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
+...=|....++...+..|..+...|..+|..+
T Consensus 172 LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 172 LEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 222333344556667778889999888888765
No 52
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=3.6 Score=51.32 Aligned_cols=37 Identities=32% Similarity=0.338 Sum_probs=24.9
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 625 ~~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
.+....+..+-++..++++..+|+|-+++|..-..++
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3555555666667777777777777777777666555
No 53
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.57 E-value=3.1 Score=51.67 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=19.2
Q ss_pred ChhHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 001652 625 DSSAVSKKLEEELK---KRDALIERLHEENEKLFDRL 658 (1037)
Q Consensus 625 ~~a~~~~KLEEel~---k~d~~Ie~L~eEneKL~q~l 658 (1037)
....+.+++-|..+ |.++.|..+-.+...|..++
T Consensus 485 ~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 485 NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777776653 44444555555555554444
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.56 E-value=2.4 Score=54.72 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=40.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001652 534 SENYMLADKHKIEKEQNAQLRNQVAQLLQLE-QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1037)
Q Consensus 534 ~e~~~l~~~~k~~ke~~~eL~~ql~qlle~e-eE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~ 599 (1037)
.+..+.+..++..+.....++.++..+.... +.+..++.+.+++++.|+.+++.++.++..+....
T Consensus 358 ~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 358 EEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555666666666666665444 45566666777777777777777777665544443
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.44 E-value=1.4 Score=55.58 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 491 QDLKQEILGLRQALKEANDQCVLLYNEVQ 519 (1037)
Q Consensus 491 ~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elq 519 (1037)
+.|+.|++.+++.+++.+.++..+..|++
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665555555554443
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.43 E-value=5.1 Score=46.03 Aligned_cols=44 Identities=9% Similarity=0.173 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 549 ~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL 592 (1037)
++.++...+........+++.+++..+..|+.+..++.+++.++
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444433
No 57
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.39 E-value=4.8 Score=41.14 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 565 eE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
..+.-.++.++......+.++++|..++.+
T Consensus 111 e~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 111 EHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555543
No 58
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.34 E-value=3.1 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=11.7
Q ss_pred CceeecceeeCCCC--ChhhHHhc
Q 001652 185 KKDFEFDRVYGPHV--GQAELFSD 206 (1037)
Q Consensus 185 ~k~F~FD~VF~~~a--sQ~eVF~e 206 (1037)
..-|.+|-=||-.. +|-.+++.
T Consensus 55 ~qYF~Cd~ncG~FVr~sq~r~lEd 78 (1243)
T KOG0971|consen 55 VQYFECDENCGVFVRSSQVRELED 78 (1243)
T ss_pred eeeEecCCCcceEeehhhhHHhhc
Confidence 35688887555433 33334443
No 59
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.33 E-value=2 Score=55.79 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 545 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 545 ~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
...+++..++..+...+....+.+.+++-.++++..|...-+...+++.+++..
T Consensus 476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~ 529 (1293)
T KOG0996|consen 476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGK 529 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555444444444444433
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.17 E-value=7.7 Score=43.76 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 631 KKLEEELKKRDALIERLHEENEKLFD 656 (1037)
Q Consensus 631 ~KLEEel~k~d~~Ie~L~eEneKL~q 656 (1037)
..++.++..+...+.+...++..|.+
T Consensus 265 ~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 265 AELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHH
Confidence 35555566655556555555555543
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.16 E-value=5.8 Score=51.50 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=15.5
Q ss_pred CCccceeeeccCCCCcccccc
Q 001652 217 GYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM~ 237 (1037)
|-+.. |.-|+.||||+-.|.
T Consensus 61 g~~vN-fI~G~NGSGKSAIlt 80 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAILT 80 (1074)
T ss_pred CCCce-EeecCCCCcHHHHHH
Confidence 44444 889999999998774
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.99 E-value=4.4 Score=49.25 Aligned_cols=107 Identities=14% Similarity=0.159 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 482 ELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLL 561 (1037)
Q Consensus 482 el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~qll 561 (1037)
.+.+.+.++..|+.++..+..++.........+..... ....+++.+...+.......+.++..+++++..+.
T Consensus 175 ~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~-------~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 175 KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG-------ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555555555555555554433322222211111 11122333333333333334444445555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 562 e~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
....+....+...+..+..++..+..++....-.
T Consensus 248 ~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 248 MDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344445555556666666666665544433
No 63
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.95 E-value=11 Score=40.55 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 481 KELYEREKEIQDLKQEILGLRQALKE 506 (1037)
Q Consensus 481 ~el~~l~~eI~~Lk~Ei~~Lr~~L~~ 506 (1037)
..++..+..-.+|..|+..|+..+..
T Consensus 29 ~~ve~~ee~na~L~~e~~~L~~q~~s 54 (193)
T PF14662_consen 29 RSVETAEEGNAQLAEEITDLRKQLKS 54 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555443
No 64
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.93 E-value=3.1 Score=51.93 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=7.9
Q ss_pred HHHHHHhhccc
Q 001652 933 QIRSWLAENFE 943 (1037)
Q Consensus 933 ~~~~~~~~~~~ 943 (1037)
.+-+||||.=.
T Consensus 688 ~Le~~laekR~ 698 (1265)
T KOG0976|consen 688 HLEGWLAEKRN 698 (1265)
T ss_pred HHHHHHhhhhh
Confidence 36789998544
No 65
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.90 E-value=4.4 Score=54.14 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=12.5
Q ss_pred hhHhHHHHHHHHHHHHHHhcCC
Q 001652 773 REHEILAEIRDAVFAFIRKMEP 794 (1037)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~ 794 (1037)
.+++=|.+-+..+...|-+|.-
T Consensus 984 ~~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 984 SQREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666543
No 66
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.87 E-value=0.029 Score=60.52 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=33.2
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..|+||.-+.. ..++..|..+..+.+.--..+|. +|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 57999997653 44667777666666652223444 7889999999999874
No 67
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.59 E-value=6.1 Score=49.60 Aligned_cols=28 Identities=39% Similarity=0.489 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 632 KLEEELKKRDALIERLHEENEKLFDRLT 659 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEneKL~q~l~ 659 (1037)
-|.-.+++||.+|.||.+-..-|...+.
T Consensus 526 iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 526 ILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999888777666553
No 68
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.54 E-value=0.077 Score=63.45 Aligned_cols=88 Identities=23% Similarity=0.378 Sum_probs=57.9
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCccccccc------C-----CCCCChHHHHHHHHH
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG------S-----SHDRGLYARCFEELF 254 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G------s-----~~~~GIIpRal~~LF 254 (1037)
..|....-|.|.-.|-. .|..||+++-+|...- .-.|.|||||||||-- - .++.-+ ..+||
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTL----AaQLy 74 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTL----AAQLY 74 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEEEecchhH----HHHHH
Confidence 45777777888888754 3567777777776543 4479999999999953 1 123333 44555
Q ss_pred HhhccCcccccccceeEEEEEEechhhh
Q 001652 255 DLSNSDTTATARFNFAVTVFELYNEQLR 282 (1037)
Q Consensus 255 ~~i~~~~~~~~~~~V~VS~lEIYNE~I~ 282 (1037)
....+ --+.......||||.-|.-..|
T Consensus 75 ~Efk~-fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 75 SEFKE-FFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHH-hCcCcceEEEeeeccccCcccc
Confidence 54443 2345667889999998865543
No 69
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.47 E-value=8.4 Score=52.63 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.9
Q ss_pred cceeeeccCCCCcccccc
Q 001652 220 VSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM~ 237 (1037)
.++.-+|++|||||.+|-
T Consensus 28 ~~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 356678999999999884
No 70
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.46 E-value=5.2 Score=55.28 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=18.0
Q ss_pred eeeeccCCHHHHHHHHHHHHhhcCC
Q 001652 306 LVQEKVDNPLEFSKVLKSAFQSRGN 330 (1037)
Q Consensus 306 L~~~~V~s~~e~~~lL~~g~~~R~~ 330 (1037)
+.+..|+...+..++.+.|+-+|-.
T Consensus 682 l~QLrcngVLEgIRicR~GfPnr~~ 706 (1930)
T KOG0161|consen 682 LNQLRCNGVLEGIRICRQGFPNRMP 706 (1930)
T ss_pred HHHhhccCcHHHHHHHHhhCccccc
Confidence 4556677777888888888777654
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.38 E-value=3.3 Score=50.35 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=13.6
Q ss_pred cceeeeccCCCCccccc
Q 001652 220 VSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1037)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35566899999999865
No 72
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.28 E-value=14 Score=39.86 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001652 488 KEIQDLKQEILGLRQALKEA 507 (1037)
Q Consensus 488 ~eI~~Lk~Ei~~Lr~~L~~~ 507 (1037)
..|..|++++..++......
T Consensus 27 ~lIksLKeei~emkk~e~~~ 46 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERN 46 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655443
No 73
>PRK03918 chromosome segregation protein; Provisional
Probab=93.24 E-value=18 Score=46.60 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.2
Q ss_pred eeeeccCCCCccccc
Q 001652 222 IFAYGQTHSGKTHTM 236 (1037)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1037)
.+-+|++|||||..|
T Consensus 26 ~~i~G~nG~GKStil 40 (880)
T PRK03918 26 NLIIGQNGSGKSSIL 40 (880)
T ss_pred EEEEcCCCCCHHHHH
Confidence 347899999999764
No 74
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.13 E-value=7.2 Score=54.02 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=7.7
Q ss_pred ChHHHHHHHHHHhhc
Q 001652 244 GLYARCFEELFDLSN 258 (1037)
Q Consensus 244 GIIpRal~~LF~~i~ 258 (1037)
|++.|.+.+|...++
T Consensus 423 ~lYerlF~wlV~riN 437 (1930)
T KOG0161|consen 423 ALYERLFGWLVKRIN 437 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555444
No 75
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.97 E-value=17 Score=45.19 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=24.7
Q ss_pred CCcchhhhhhhcCCCC-CCcccchhhccchhhHHHHHHHHH
Q 001652 727 TPAGEYLTAALNDFNP-EQYDNLAVISDGANKLLMLVLAAV 766 (1037)
Q Consensus 727 tpag~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1037)
|-.|-||-++.-|=.- +||+.+----||-=--||+=+|-+
T Consensus 838 ~~~~~hl~~~~~nttt~eh~eall~QreGElthlq~e~~~l 878 (961)
T KOG4673|consen 838 TMSPYHLKSITPNTTTSEHYEALLRQREGELTHLQTELASL 878 (961)
T ss_pred ccchhHHhhhcCCCchHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4455666655543332 478877777777777777766543
No 76
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.95 E-value=30 Score=42.83 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 476 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQ 510 (1037)
Q Consensus 476 ~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q 510 (1037)
++-...+++.....|..|+.|++.|+.++...+..
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34455666777788888999999999888776554
No 77
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.90 E-value=15 Score=39.43 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 483 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEV 518 (1037)
Q Consensus 483 l~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~El 518 (1037)
+.+++.--++|.+|+.+|+..+...++....+-.++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~ 45 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEI 45 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544444333333333
No 78
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.87 E-value=5.8 Score=50.99 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=14.0
Q ss_pred CCCHHHHHhHhHHHHHhhhc
Q 001652 440 AANMSETLSSLNFSSRARST 459 (1037)
Q Consensus 440 ~~~~~ETLsTLrFAsRar~I 459 (1037)
..+-+-+.-++.|.+|+-+.
T Consensus 250 ~~ykerlmDs~fykdRveel 269 (1195)
T KOG4643|consen 250 TTYKERLMDSDFYKDRVEEL 269 (1195)
T ss_pred CccchhhhhhHHHHHHHHHH
Confidence 45556677778888887654
No 79
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.86 E-value=4.7 Score=41.06 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 540 ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKI 585 (1037)
Q Consensus 540 ~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~ei 585 (1037)
...++.++++...+...+. ....+...++..++.+|+.|+..+
T Consensus 107 ~~~~k~~kee~~klk~~~~---~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 107 EAKLKQEKEELQKLKNQLQ---QRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444433333 333444555666666666666554
No 80
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.81 E-value=11 Score=50.63 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=14.0
Q ss_pred hhcCCccceeeeccCCCCccccc
Q 001652 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
+-.|+|+ --||.||||+--+
T Consensus 22 f~~~~t~---IvGPNGSGKSNI~ 41 (1163)
T COG1196 22 FSPGFTA---IVGPNGSGKSNIV 41 (1163)
T ss_pred cCCCCeE---EECCCCCchHHHH
Confidence 3445554 3599999999776
No 81
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.67 E-value=13 Score=38.13 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 538 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 538 ~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
.+..++..+.+...+....+....+...+........+..+..|+.+...++..+..
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444555555555555555555555555555556666666666666666665544
No 82
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.58 E-value=13 Score=48.10 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 001652 644 IERLHEENEKLFDRLT 659 (1037)
Q Consensus 644 Ie~L~eEneKL~q~l~ 659 (1037)
.+..+.|..|+.+.+.
T Consensus 573 lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 573 LELIHNELKKYIDALN 588 (1195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455667777777664
No 83
>PRK09039 hypothetical protein; Validated
Probab=92.48 E-value=13 Score=43.33 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 551 ~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
.+++.+...+.....+.+....+...++..|+.+|+.|+.|+...
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 355556666665566666677777788888888888888887543
No 84
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.30 E-value=19 Score=46.24 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHH---HHHHHH
Q 001652 476 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIE---KEQNAQ 552 (1037)
Q Consensus 476 ~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~---ke~~~e 552 (1037)
++.+..++...+.++..++.++..+..........+..+..++........-|+.+++.-...+..+.... ...+..
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666555554444444444444444444444555555544444444333322 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 553 L~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
+......+.....+++..+...+.+|..|+.+|+.|+.++.
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443344444555555556666666666666655543
No 85
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.25 E-value=0.42 Score=54.94 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=26.9
Q ss_pred hhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 201 AELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 201 ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..+++.+...++.+-.+. -.++-||+||+||||.+.
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence 344555566777776554 569999999999999884
No 86
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.13 E-value=17 Score=41.06 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQE 91 (1037)
Q Consensus 57 ~k~~l~~~v~~l~~~l~~~~~~~~~l~~e~~~~q~ 91 (1037)
+-+.|..++...=+++..+..++..|..+...+..
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~ 39 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELRE 39 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 34556777777777777777777777777665544
No 87
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.05 E-value=16 Score=44.94 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh---HHHhHHHHHHHHHHHHHHH
Q 001652 475 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDL---KSENYMLADKHKIEKEQNA 551 (1037)
Q Consensus 475 i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L---~~e~~~l~~~~k~~ke~~~ 551 (1037)
+..+...+...++.+|..|+.|+..|+..+......+.....++........+++.++ +.....++...+.++.++.
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445556677788888888888888877665444433333332222222233222 2222333333444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1037)
Q Consensus 552 eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe 589 (1037)
.++..+..+....++....-..++..++.|..+++-+.
T Consensus 180 rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 180 RLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555555543333322222344555566666665555
No 88
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.99 E-value=2.6 Score=49.97 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE 564 (1037)
Q Consensus 485 ~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle~e 564 (1037)
..-.+|+.|+.+++.|.+.++++. ++....+++.++|+. ++.+ ..++...+..++.+.++.-..+.
T Consensus 268 ~i~~~i~~lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~---l~~D----~nk~~~~~~~mk~K~~~~~g~l~------ 333 (622)
T COG5185 268 IINTDIANLKTQNDNLYEKIQEAM-KISQKIKTLREKWRA---LKSD----SNKYENYVNAMKQKSQEWPGKLE------ 333 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---Hhhh----HHHHHHHHHHHHHHHHhcchHHH------
Confidence 345567777777777776666543 222333344444432 2222 22333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChhHHhHHHHHHHHHHHHHH
Q 001652 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALI 644 (1037)
Q Consensus 565 eE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~~~KLEEel~k~d~~I 644 (1037)
+++.++...+++|+.|+..+..|..|+..+-.+-+...-- .++--.+..+.+.+.....+|......++.++
T Consensus 334 -kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~m-------n~Ere~L~reL~~i~~~~~~L~k~V~~~~lea 405 (622)
T COG5185 334 -KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELM-------NQEREKLTRELDKINIQSDKLTKSVKSRKLEA 405 (622)
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHH-------HHHHHHHHHHHHHhcchHHHHHHHHHhHHHHH
Confidence 3344555566677777777777777665433322110000 00000111122334445566777777777777
Q ss_pred HHHHHHHHHHHHHhhhc
Q 001652 645 ERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 645 e~L~eEneKL~q~l~~~ 661 (1037)
+..-+..+|+++...+.
T Consensus 406 q~~~~slek~~~~~~sl 422 (622)
T COG5185 406 QGIFKSLEKTLRQYDSL 422 (622)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776544
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.73 E-value=13 Score=42.85 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 555 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 555 ~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
..+........+.+.+++..+..|+....+..+++.++.+
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444455555555555555444444
No 90
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.71 E-value=20 Score=43.93 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
++.++...+++|+.++.++.+|+.++..+
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555566666666666666655443
No 91
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.59 E-value=16 Score=44.39 Aligned_cols=112 Identities=20% Similarity=0.239 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 481 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQL 560 (1037)
Q Consensus 481 ~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~ql 560 (1037)
.+++..+++.++|++.+..|+.++.+...+...+.+++-.....-..++..|+..... ++..+|+...++.++.+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIa----lEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIA----LEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666665555555444443322222222233344333333 333445555555555555
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 561 LQLEQE------QKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1037)
Q Consensus 561 le~eeE------~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~ 596 (1037)
-+...+ ...++++.+.++..++++........++++
T Consensus 407 h~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlL 448 (654)
T KOG4809|consen 407 HNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLL 448 (654)
T ss_pred HHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 445666666666666666666555544433
No 92
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.53 E-value=16 Score=36.58 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=25.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001652 627 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1037)
Q Consensus 627 a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~ 660 (1037)
...+..|+.++......++.|...|.=|.++|..
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456678888888888888888888877777654
No 93
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.36 E-value=35 Score=40.09 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhhcc------CCCCCCCCCCccccccccccC-CCcceeEEEeeCCCCCCHHHHHhHhHHHHH
Q 001652 390 KSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLG-ESSKTLMIVNICPNAANMSETLSSLNFSSR 455 (1037)
Q Consensus 390 kSLsaLg~VI~ALs~------k~~hIPYRdSKLTrLLqdSLG-GnSkTlmI~~ISPs~~~~~ETLsTLrFAsR 455 (1037)
-+...||.||..+.+ ++.|..+ || -.-.|.+|++|=...---.-||..|=.+++
T Consensus 7 ~~vlvLgGVIA~~gD~ig~kvGkarLrl------------F~LRPkqTAvlvtvltG~liSA~tLailf~~~~ 67 (499)
T COG4372 7 PFVLVLGGVIAYAGDTIGKKVGKARLRL------------FGLRPKQTAVLVTVLTGMLISAATLAILFLLNR 67 (499)
T ss_pred HHHHHHHhHHHHHhhHHHhhhhHHHHhH------------hccCcccceeehhhhhcchhhHHHHHHHHHhhh
Confidence 356788999988865 2222110 11 124566666665544434455655555443
No 94
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.33 E-value=17 Score=46.42 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChhHHhHHHHHHHHHHHHHHHH
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIER 646 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~~~KLEEel~k~d~~Ie~ 646 (1037)
++.+++.....|+.++.+++..+.++...... ...+. ..+.. -...++.-|-++=.+++++|++
T Consensus 644 ~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~-~~~s~----~L~~~-----------Q~~~I~~iL~~~~~~I~~~v~~ 707 (717)
T PF10168_consen 644 MKDQLQDLKASIEQLKKKLDYQQRQIESQKSP-KKKSI----VLSES-----------QKRTIKEILKQQGEEIDELVKQ 707 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCCc----cCCHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777777777666665522211 11110 11111 2344555666666666666666
Q ss_pred HHHHHHH
Q 001652 647 LHEENEK 653 (1037)
Q Consensus 647 L~eEneK 653 (1037)
++..+..
T Consensus 708 ik~i~~~ 714 (717)
T PF10168_consen 708 IKNIKKI 714 (717)
T ss_pred HHHHHHh
Confidence 6666554
No 95
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.31 E-value=14 Score=48.55 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 628 AVSKKLEEELKKRDALIERLHEENEKL 654 (1037)
Q Consensus 628 ~~~~KLEEel~k~d~~Ie~L~eEneKL 654 (1037)
+.+.+++-+++-....+++...|+..+
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777778777777766
No 96
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.29 E-value=8.9 Score=38.28 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 475 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLL 514 (1037)
Q Consensus 475 i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l 514 (1037)
+.+.+...+..++.++..|+.++..|......+..++..+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666655555444433
No 97
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.26 E-value=10 Score=49.64 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=11.0
Q ss_pred eeccCCCCccccc
Q 001652 224 AYGQTHSGKTHTM 236 (1037)
Q Consensus 224 AYGQTGSGKTyTM 236 (1037)
-.|+.||||+-.+
T Consensus 113 IvGPNGSGKSNVI 125 (1293)
T KOG0996|consen 113 IVGPNGSGKSNVI 125 (1293)
T ss_pred eECCCCCCchHHH
Confidence 3599999999876
No 98
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.19 E-value=15 Score=43.21 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChhHHhHHHHHHHHHHHHHHHHHH
Q 001652 576 STIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLH 648 (1037)
Q Consensus 576 ~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~~~KLEEel~k~d~~Ie~L~ 648 (1037)
..|..|+.+++.|+..+..+..+...-.... .++....++ .-..+.+||.+++.+++.+-..|.
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy------~~Ee~~~re---en~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKSYQEKLMQY------RAEEVDHRE---ENERLQRKLINELERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667778888888887765444432210000 000000111 345677888888888876655443
No 99
>PRK03918 chromosome segregation protein; Provisional
Probab=91.13 E-value=35 Score=44.09 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.1
Q ss_pred HhhHHHHH
Q 001652 986 LGQLLSEY 993 (1037)
Q Consensus 986 ~~~~~~~~ 993 (1037)
|..+|..+
T Consensus 833 l~~~l~~~ 840 (880)
T PRK03918 833 LVDIMERY 840 (880)
T ss_pred HHHHHHHH
Confidence 33344333
No 100
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.02 E-value=26 Score=40.49 Aligned_cols=156 Identities=24% Similarity=0.215 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhH-HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 482 ELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK-SENYMLADKHKIEKEQNAQLRNQVAQL 560 (1037)
Q Consensus 482 el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~-~e~~~l~~~~k~~ke~~~eL~~ql~ql 560 (1037)
.+.+...+...|+.|+..|++.+.++..++..+++.+....-.......... .+...+-..++..++++.+++..+..+
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777778877777777776666655433222211111110 122223333344555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChhHHhHHHHHHHHHH
Q 001652 561 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKR 640 (1037)
Q Consensus 561 le~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~~~KLEEel~k~ 640 (1037)
..+.+|+. .+-..++.+...|..+|+........+ .- +.+...+-.+-|.|++...
T Consensus 153 lDEkeEl~-------~ERD~yk~K~~RLN~ELn~~L~g~~~r----------------iv-DIDaLi~ENRyL~erl~q~ 208 (319)
T PF09789_consen 153 LDEKEELV-------TERDAYKCKAHRLNHELNYILNGDENR----------------IV-DIDALIMENRYLKERLKQL 208 (319)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCCCCCC----------------cc-cHHHHHHHHHHHHHHHHHH
Confidence 54444433 344455666666666665544332220 00 1122333455666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 001652 641 DALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 641 d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
++....++.-..|-+.-+..+
T Consensus 209 qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 209 QEEKELLKQTINKYKSALERK 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 666666666555555555533
No 101
>PRK02224 chromosome segregation protein; Provisional
Probab=90.96 E-value=29 Score=44.87 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=11.9
Q ss_pred eeeeccCCCCccccc
Q 001652 222 IFAYGQTHSGKTHTM 236 (1037)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1037)
.+-+|++|||||..+
T Consensus 26 ~~i~G~Ng~GKStil 40 (880)
T PRK02224 26 TVIHGVNGSGKSSLL 40 (880)
T ss_pred EEEECCCCCCHHHHH
Confidence 345999999998764
No 102
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.96 E-value=9.1 Score=44.02 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 541 ~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL 592 (1037)
..+...+.++...+..+.++....++++..+......+..++.+|.++++.+
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444445555555555555555555555444
No 103
>PRK02224 chromosome segregation protein; Provisional
Probab=90.93 E-value=27 Score=45.22 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=12.8
Q ss_pred ccchhhhH----HHHHhhhhhhcC
Q 001652 956 TTGQLELL----STAIMDGWMAGL 975 (1037)
Q Consensus 956 ~~~~~~~~----~~~~~~~~~~~~ 975 (1037)
..|+-.++ --||...|+.|.
T Consensus 783 S~G~~~~~~lalr~a~~~~~~~~~ 806 (880)
T PRK02224 783 SGGERALFNLSLRCAIYRLLAEGI 806 (880)
T ss_pred CccHHHHHHHHHHHHHHHHhhhcc
Confidence 34555544 367788888765
No 104
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.91 E-value=29 Score=40.08 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001652 572 QQRDSTIKTLQAKINSIESQRNEALHSSE 600 (1037)
Q Consensus 572 qq~e~~Ie~Lq~eieeLe~qL~e~~~~~~ 600 (1037)
..++.-|..|+.++++|--+++..+.-+.
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566677777777776666655444433
No 105
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.81 E-value=10 Score=37.95 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 480 RKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQ 559 (1037)
Q Consensus 480 ~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~q 559 (1037)
...+..+...|..+..|+..++.++.....+-..+.+|+-+....+.++ +........++.++.+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~---------------~~~~~~~~~L~~el~~ 79 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL---------------RALKKEVEELEQELEE 79 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888877766666666554433322222 1122233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 560 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 560 lle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
+.++.+-.-+-+-++.++++.|+..+.+++.-.+.
T Consensus 80 l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 80 LQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 43333333333445566666677777776654443
No 106
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.80 E-value=15 Score=45.85 Aligned_cols=30 Identities=37% Similarity=0.608 Sum_probs=18.3
Q ss_pred cccchhhccchhhHHHHHHHHHHHhccchhHhHHHHHHH
Q 001652 745 YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRD 783 (1037)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1037)
|--+|+|=++.+.|. .+|-..|+ |..||||
T Consensus 553 YK~La~lh~~c~~Li----~~v~~tG~-----~~rEird 582 (594)
T PF05667_consen 553 YKLLASLHENCSQLI----ETVEETGT-----ISREIRD 582 (594)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhhH-----HHHHHHH
Confidence 666677777777744 34445554 4566665
No 107
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.60 E-value=16 Score=49.67 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=19.3
Q ss_pred hHhHHHHHHHHHHHHHHhcCCcchhhhh
Q 001652 774 EHEILAEIRDAVFAFIRKMEPTRVMDTM 801 (1037)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1037)
.++=+.||-.-+-.+-++.=+..+.|+.
T Consensus 1135 ~~~~~~~~n~~~~~~w~~~~~~~~~~~i 1162 (1311)
T TIGR00606 1135 HSMKMEEINKIIRDLWRSTYRGQDIEYI 1162 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHHHh
Confidence 4455777877777777777777766654
No 108
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.44 E-value=12 Score=51.28 Aligned_cols=13 Identities=38% Similarity=0.355 Sum_probs=8.8
Q ss_pred CccccccccccCC
Q 001652 414 SMLTKVLADSLGE 426 (1037)
Q Consensus 414 SKLTrLLqdSLGG 426 (1037)
+.+|+.|+++|-.
T Consensus 211 ~~i~~fl~~yll~ 223 (1486)
T PRK04863 211 SAITRSLRDYLLP 223 (1486)
T ss_pred HhHHHHHHHHcCC
Confidence 4677777777743
No 109
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=90.41 E-value=14 Score=41.08 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 001652 536 NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRS 603 (1037)
Q Consensus 536 ~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s 603 (1037)
...++..+.+.+...+++......+...++++.+.+..-+++|-.|++++++-+.++...+...+..+
T Consensus 238 ia~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677788888888888888888888888888888888888888887766655555444433
No 110
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.38 E-value=19 Score=41.42 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCC
Q 001652 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMD 625 (1037)
Q Consensus 546 ~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 625 (1037)
.+.+...++.-+.++.++.+.++.+++....++...+.+-..|.+++.+.....+..-.-...+ +. .
T Consensus 125 ~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQat--f~-----------e 191 (401)
T PF06785_consen 125 TKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQAT--FV-----------E 191 (401)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cc-----------c
Confidence 3344444555555555555555566666666665566666666666655444432210000000 00 1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 626 ~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
..+.-++-+..+-+++..++.|.-|...|.|.-.+.
T Consensus 192 q~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~ 227 (401)
T PF06785_consen 192 QHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDM 227 (401)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 223334556666677777777777777777765544
No 111
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.35 E-value=21 Score=46.33 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=11.5
Q ss_pred CChhhHHhchHHhHHhhhcCCc
Q 001652 198 VGQAELFSDVQPFVQSALDGYN 219 (1037)
Q Consensus 198 asQ~eVF~eV~pLV~svLdGyN 219 (1037)
..+...|+....+++++..|..
T Consensus 367 ~~~s~~~e~~e~~~eslt~G~S 388 (1174)
T KOG0933|consen 367 QEDSKLLEKAEELVESLTAGLS 388 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3344455555556666655544
No 112
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.32 E-value=16 Score=49.69 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=7.5
Q ss_pred ccccccccceecc
Q 001652 857 YVDEKIQGFKINL 869 (1037)
Q Consensus 857 ~~~~~~~~~~~~~ 869 (1037)
.++++|...+..|
T Consensus 1079 ~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1079 GYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHH
Confidence 3556666655555
No 113
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.22 E-value=23 Score=45.99 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 486 REKEIQDLKQEILGLRQALKEANDQC 511 (1037)
Q Consensus 486 l~~eI~~Lk~Ei~~Lr~~L~~~~~q~ 511 (1037)
+..++.+++.+|...+..+....+..
T Consensus 746 ~~e~v~e~~~~Ike~~~~~k~~~~~i 771 (1174)
T KOG0933|consen 746 LLEEVEESEQQIKEKERALKKCEDKI 771 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333
No 114
>PRK06620 hypothetical protein; Validated
Probab=90.20 E-value=0.16 Score=54.81 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=35.0
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcCCc---cceeeeccCCCCcccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN---VSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN---~~IfAYGQTGSGKTyTM~ 237 (1037)
..|+||..+...+ +...|..+..+.+. -|+| -.++-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~~-N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSS-NDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEeccc-HHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 5789999776544 45577776555432 1344 359999999999999995
No 115
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.15 E-value=39 Score=45.12 Aligned_cols=44 Identities=18% Similarity=0.033 Sum_probs=26.3
Q ss_pred HHHHHH--HHHhhccceeeeecC----CCCCCccchhhhHHHHHhhhhhh
Q 001652 930 LQRQIR--SWLAENFEFLSVTGD----DASGGTTGQLELLSTAIMDGWMA 973 (1037)
Q Consensus 930 ~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 973 (1037)
++|++| .|+.==.-|++++++ ....++-|++=++-..++=.|+.
T Consensus 598 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~lgr~~~i~~~~~l~~~~ 647 (1109)
T PRK10929 598 AMRYYLLSIGLIVPLIMALITFDNLNDREFSGTLGRLCFILLCGALSLVT 647 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHHHHHHHH
Confidence 344444 254333334444444 55677889998888877766664
No 116
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=1.7 Score=48.21 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.3
Q ss_pred ccceeeeccCCCCccccc
Q 001652 219 NVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1037)
--.++-||+.|+|||...
T Consensus 181 PKGvlLygppgtGktLla 198 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLLA 198 (404)
T ss_pred CcceEEecCCCCchhHHH
Confidence 445899999999998543
No 117
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.11 E-value=3.1 Score=44.34 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 548 e~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL 592 (1037)
..+..+...+..+.....+++.++...+..++.+++++..|..++
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555566666666666666666666555
No 118
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.01 E-value=44 Score=45.17 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=9.1
Q ss_pred cchhhhHHHHHhhhh-hhcCCC
Q 001652 957 TGQLELLSTAIMDGW-MAGLGG 977 (1037)
Q Consensus 957 ~~~~~~~~~~~~~~~-~~~~~~ 977 (1037)
-..|...+. -.+.| ++ .|.
T Consensus 1045 w~~Lk~F~~-~~~~w~~~-~~~ 1064 (1201)
T PF12128_consen 1045 WKPLKQFSD-EYELWRSS-DGS 1064 (1201)
T ss_pred HHHHHHHHH-HHHHHhcc-cCc
Confidence 344444444 34667 44 444
No 119
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.96 E-value=18 Score=45.67 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=12.7
Q ss_pred cCCCCCChhHHhHHHHHHHHHHHHHH
Q 001652 619 TTGDGMDSSAVSKKLEEELKKRDALI 644 (1037)
Q Consensus 619 ~~~~~~~~a~~~~KLEEel~k~d~~I 644 (1037)
+++..++.....+.++|..++.+.|-
T Consensus 254 i~E~d~~lq~sak~ieE~m~qlk~kn 279 (1265)
T KOG0976|consen 254 IEEQDMDLQASAKEIEEKMRQLKAKN 279 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554444333
No 120
>PRK12377 putative replication protein; Provisional
Probab=89.93 E-value=0.21 Score=55.26 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=36.8
Q ss_pred eecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCccccccc
Q 001652 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1037)
Q Consensus 188 F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 238 (1037)
.+||........|..++..+..++..+..+. ..++-||++|+||||.+.+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3466544445567778887777877776654 4688999999999999853
No 121
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.85 E-value=0.2 Score=54.46 Aligned_cols=47 Identities=17% Similarity=0.358 Sum_probs=33.5
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..|+||.-+.. .+...+..+..+.. ......++-||++|+||||.+.
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 56888876654 56667766655543 2223479999999999999994
No 122
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.81 E-value=21 Score=43.76 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=19.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 532 LKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQI 571 (1037)
Q Consensus 532 L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~ql 571 (1037)
++.....+...++.+++++.+-+..+..+.....+++.++
T Consensus 285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555554444444443
No 123
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.75 E-value=49 Score=39.03 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 001652 634 EEELKKRDALIERLHEENEKLFDRLTEKASS 664 (1037)
Q Consensus 634 EEel~k~d~~Ie~L~eEneKL~q~l~~~~~~ 664 (1037)
+|.+++++..+++|..++.-|.+.+..--.+
T Consensus 251 ~e~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 251 AEQIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888887777554443
No 124
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.72 E-value=20 Score=45.15 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 630 SKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 630 ~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
-..|..+++...+.+.+|--|-.+|-.+++.+
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 34555566666666666666666677766655
No 125
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.69 E-value=0.16 Score=57.44 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=27.0
Q ss_pred HHhHHhhhcCCccceeeeccCCCCccccc
Q 001652 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 208 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
.|++..+++--++.|+.-|+||||||.||
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 57888888999999999999999999998
No 126
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.67 E-value=34 Score=42.84 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=35.1
Q ss_pred eeCCCCCCHHHHHhHhHHHHHhhhcccccCcchhhhhh-h----HHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 435 NICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKW-R----DIANDA-RKELYEREKEIQDLKQEILGLRQALK 505 (1037)
Q Consensus 435 ~ISPs~~~~~ETLsTLrFAsRar~I~~~~~n~~~i~~~-~----~i~~~~-~~el~~l~~eI~~Lk~Ei~~Lr~~L~ 505 (1037)
.|||....|..-+.+|. +.|...++-++..+.. + ...+.+ +.++.+.+..|..|..|-++|-++..
T Consensus 399 ~~ssl~~e~~QRva~lE-----kKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql 470 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATLE-----KKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQL 470 (961)
T ss_pred cccchHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 46777777777666664 2222223334433211 1 112222 23556677788888888777765543
No 127
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.67 E-value=26 Score=45.05 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=12.3
Q ss_pred hhhhHHHHhhhcccch
Q 001652 901 LREIQEEAKSFATGNK 916 (1037)
Q Consensus 901 ~~~~~~~~~~~~~~~~ 916 (1037)
+++|..+|...||.+|
T Consensus 715 ~l~mKqeal~aAisek 730 (775)
T PF10174_consen 715 VLEMKQEALLAAISEK 730 (775)
T ss_pred HHHHhhcccccCCCch
Confidence 5677778888888776
No 128
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.59 E-value=0.24 Score=61.13 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=37.0
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 185 ~k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
...|+||..+-... +..+|..+..+++..-.+||. ||-||.+|+||||.+.
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 36799999664443 445666555666554456776 8999999999999984
No 129
>PRK06893 DNA replication initiation factor; Validated
Probab=89.54 E-value=0.21 Score=54.15 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=32.3
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..++||..++.+. ..-+ ..+...+-.++|-+++-||++|+||||.+.
T Consensus 11 ~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 5689999997553 2111 122223334778889999999999999984
No 130
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.51 E-value=26 Score=47.22 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 001652 643 LIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 643 ~Ie~L~eEneKL~q~l~~~ 661 (1037)
.|..++.+.+.|..++...
T Consensus 772 ~I~~l~~~i~~L~~~l~~i 790 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRI 790 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666676666666
No 131
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.50 E-value=14 Score=44.03 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001652 567 QKMQIQQRDSTIKTLQAKINSI 588 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeL 588 (1037)
++..+...+.+|..|+.++..|
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4445555555555555555555
No 132
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=89.43 E-value=0.8 Score=52.95 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=15.0
Q ss_pred cceeeeccCCCCccccc
Q 001652 220 VSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1037)
..|+-||++|+|||++.
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999887
No 133
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.41 E-value=45 Score=46.28 Aligned_cols=30 Identities=33% Similarity=0.330 Sum_probs=12.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 475 IANDARKELYEREKEIQDLKQEILGLRQAL 504 (1037)
Q Consensus 475 i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L 504 (1037)
+...++.+..-.+.++.-++.|...|+.+.
T Consensus 1154 iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~ 1183 (1822)
T KOG4674|consen 1154 IVSFLRKEKEIAETKLDTLKRENARLKQQV 1183 (1822)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.38 E-value=58 Score=40.99 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 545 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 545 ~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
.+|+++.++++....+-+...++...++........|..++.+++.++...
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~ 214 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNL 214 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665666666555555555666666665555443
No 135
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=89.04 E-value=0.96 Score=53.05 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.3
Q ss_pred ccceeeeccCCCCccccc
Q 001652 219 NVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1037)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 346899999999999876
No 136
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=13 Score=47.02 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 568 KMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 568 k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
..++.....+++.|..+.+.+.+++.+
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k 762 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNK 762 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666665666656643
No 137
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=3.8 Score=51.49 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 543 HKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 543 ~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
+..++-+++.+.++..++..+.++++.+++.+.+....|.+++..|+.||.
T Consensus 666 I~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 666 IRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444455555555555555566666666666666667777777766664
No 138
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.77 E-value=5.7 Score=43.04 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001652 488 KEIQDLKQEILGLRQALKEAN 508 (1037)
Q Consensus 488 ~eI~~Lk~Ei~~Lr~~L~~~~ 508 (1037)
..+.+|+.|+..|+.++.+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666655555443
No 139
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.75 E-value=66 Score=40.49 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=17.1
Q ss_pred ccccchhhhhhhhccccccccccccc
Q 001652 872 EKKSKLSSVVLRMRGIDQDTWRHQVT 897 (1037)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1037)
|.+-|+-.+|..+-|-. ||-+.+||
T Consensus 435 e~~e~le~~~~ql~~et-~ti~eyi~ 459 (617)
T PF15070_consen 435 ERVEKLEHRFIQLSGET-DTIGEYIT 459 (617)
T ss_pred HHHHHHHHHHHHhccCc-cchhhhhc
Confidence 45667777777777654 67776665
No 140
>PRK08116 hypothetical protein; Validated
Probab=88.66 E-value=0.22 Score=55.45 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=37.3
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhc--CCccceeeeccCCCCcccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLd--GyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..++||.-. .+..+...|..+...++.+.. ..|..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 456777644 455666677777777777654 345569999999999999984
No 141
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.62 E-value=16 Score=43.19 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 548 e~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
+.++.++.++....+....+...+...+.+-+.-+.-+++|.+++..+...
T Consensus 339 d~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 339 DLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445555555555566666655543333
No 142
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.48 E-value=30 Score=36.31 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001652 488 KEIQDLKQEILGLRQA 503 (1037)
Q Consensus 488 ~eI~~Lk~Ei~~Lr~~ 503 (1037)
..+..|.+|+..+++.
T Consensus 88 ~~l~~l~~el~~l~~~ 103 (191)
T PF04156_consen 88 QQLQQLQEELDQLQER 103 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 143
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.47 E-value=0.75 Score=54.27 Aligned_cols=51 Identities=22% Similarity=0.385 Sum_probs=32.6
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHH-hhhc--C--CccceeeeccCCCCccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--G--YNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV-~pLV~-svLd--G--yN~~IfAYGQTGSGKTyTM 236 (1037)
..++|+.|-+.+..-+++-+.| .|+.. ..+. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3567777777655555555444 34432 2332 2 2346888999999999987
No 144
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.45 E-value=24 Score=40.72 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 537 YMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 537 ~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
..+..++.....++......+.++.+..++++..+.....++..++.+|.++++.+.+
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555566666666677777777777778888888888888888888877743
No 145
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.40 E-value=0.35 Score=53.43 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=34.7
Q ss_pred eecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 188 F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
.+||........|..++..+..+++.+..|+ ..++-||.+|+||||.+.
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHH
Confidence 4565543334557777777777777665543 368999999999999984
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.28 E-value=0.28 Score=58.47 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=35.7
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 185 ~k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
...|+||.-+.. .++...|..+..++++ -..||. +|-||++|+||||.+.
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 467999997753 4556677665555543 123665 9999999999999984
No 147
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.26 E-value=42 Score=38.59 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001652 485 EREKEIQDLKQEILGLRQALK 505 (1037)
Q Consensus 485 ~l~~eI~~Lk~Ei~~Lr~~L~ 505 (1037)
.+.+.++.|++|+..||.+..
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~ 184 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEAS 184 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554443
No 148
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.24 E-value=82 Score=39.71 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=18.8
Q ss_pred HHHHHhcCchHHHhhhhhhhcccCCCCEE
Q 001652 119 LEAEARISPLINEKKRLFNDLLTAKGNIK 147 (1037)
Q Consensus 119 ~e~e~r~~~~~~eRrkLhN~l~elkGnIr 147 (1037)
....+.......+|-..|+-.+++.+||.
T Consensus 165 ~rsaEK~~~yE~EREET~qly~~l~~nie 193 (786)
T PF05483_consen 165 QRSAEKMKKYEYEREETRQLYMDLNENIE 193 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33444455556677777777777777774
No 149
>PRK05642 DNA replication initiation factor; Validated
Probab=88.16 E-value=0.35 Score=52.71 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=31.3
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..|+||.-+.. .+...+..+..+.+..-+.-...++-||.+|+||||-+.
T Consensus 14 ~~~tfdnF~~~--~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPG--ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcC--ChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 56899997743 234444444433332111123568999999999999984
No 150
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=87.87 E-value=71 Score=38.56 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIES 590 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~ 590 (1037)
+.--+.+.+.+|+.|+..-.+|++
T Consensus 451 mdk~LskKeeeverLQ~lkgelEk 474 (527)
T PF15066_consen 451 MDKTLSKKEEEVERLQQLKGELEK 474 (527)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHH
Confidence 344556667777777776666664
No 151
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.81 E-value=0.33 Score=56.90 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=34.4
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 185 ~k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
...|+||.... ...+...|..+..+...--..+| .++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 36799999443 34556677666555554212244 47889999999999983
No 152
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.71 E-value=92 Score=39.88 Aligned_cols=22 Identities=27% Similarity=0.364 Sum_probs=18.8
Q ss_pred HHHhhhhhhHHHhhhchhhccc
Q 001652 997 VYNSQLQHLKVCLKHWLELSWF 1018 (1037)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~~~~ 1018 (1037)
+-..|+.||+-.+.+-++++|=
T Consensus 549 ~irdQikhL~~av~~t~e~srq 570 (717)
T PF09730_consen 549 IIRDQIKHLQRAVDRTTELSRQ 570 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4457999999999999999875
No 153
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.68 E-value=25 Score=39.16 Aligned_cols=115 Identities=16% Similarity=0.270 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh---hhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 484 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQS---DLKSENYMLADKHKIEKEQNAQLRNQVAQL 560 (1037)
Q Consensus 484 ~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~---~L~~e~~~l~~~~k~~ke~~~eL~~ql~ql 560 (1037)
.++...+..++.+...-+..|.........+..+.+........|+. .+..++..+........+....|..++...
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~ 87 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666555555555544444333333333 244444555544444555566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 561 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 561 le~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
......+......++.+...|+.++...+..+.+.+..
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888888888888887766654444
No 154
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.53 E-value=99 Score=41.13 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001652 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSN---AKIDRVTRYLGVLADKTRKL 114 (1037)
Q Consensus 57 ~k~~l~~~v~~l~~~l~~~~~~~~~l~~e~~~~q~~~~---~~~~~~~~~l~~L~~~~~~l 114 (1037)
+.++|.++++.|+..|+.+...+..+...+.+.+..+. ..++-+++....|....++|
T Consensus 1226 ~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL 1286 (1758)
T KOG0994|consen 1226 DIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKEL 1286 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766666666666666544322 33444444444333333333
No 155
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.48 E-value=44 Score=42.46 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001652 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1037)
Q Consensus 551 ~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~ 597 (1037)
..++-++.....+..-+...+.+++.+|..|+.-..-|...+...+.
T Consensus 511 k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 511 KSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444445557788899999999999998888877665544
No 156
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.47 E-value=68 Score=39.71 Aligned_cols=116 Identities=22% Similarity=0.205 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHhhhHHHhHHHHHHHHHHHHHHHHHH
Q 001652 478 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSF---TLQSDLKSENYMLADKHKIEKEQNAQLR 554 (1037)
Q Consensus 478 ~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~---elq~~L~~e~~~l~~~~k~~ke~~~eL~ 554 (1037)
.++..+.+..++..+++.++..|+.+++.+........++.....+... ..-..++.+...+....+.+.+++..+.
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555554444333333322222111 1112233333333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 555 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 555 ~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
.+...+.......+.++.+.-.--..++..++.|..++.
T Consensus 176 ~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 176 AENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444444443333333333333333444455555544443
No 157
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.47 E-value=0.39 Score=50.89 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=34.2
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..++||.... ..+..+++.+..++. .+....|+-||++|+||||...
T Consensus 10 ~~~~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYA--GGNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCc--CCcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHH
Confidence 5588888773 255666666655543 4567789999999999999983
No 158
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.28 E-value=61 Score=37.14 Aligned_cols=93 Identities=19% Similarity=0.315 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 487 EKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE 566 (1037)
Q Consensus 487 ~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE 566 (1037)
...+.+|..++..++............+-++.+.- +.++..+....+..++....+-..+.+......+
T Consensus 157 ~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~-----------he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e 225 (294)
T COG1340 157 NEKLKELKAEIDELKKKAREIHEKIQELANEAQEY-----------HEEMIKLFEEADELRKEADELHEEFVELSKKIDE 225 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455555555555555555444444444443322 2222222233333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIES 590 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~ 590 (1037)
+...+......|..+...|..|+.
T Consensus 226 ~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 226 LHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555554443
No 159
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.10 E-value=0.37 Score=57.35 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=34.9
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 185 ~k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
...|+||.-.. ...+...|..+..+.+.--..|| .++-||++|+||||.+.
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 36789998443 23566677666665554323344 48889999999999984
No 160
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.09 E-value=0.29 Score=58.74 Aligned_cols=31 Identities=29% Similarity=0.224 Sum_probs=27.0
Q ss_pred HHhHHhhhcCCccceeeeccCCCCccccccc
Q 001652 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1037)
Q Consensus 208 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 238 (1037)
...+..++..-++.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 4566778888999999999999999999964
No 161
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=87.03 E-value=43 Score=38.49 Aligned_cols=65 Identities=17% Similarity=0.296 Sum_probs=36.6
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 530 SDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 530 ~~L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
..|.++...+.-.++.++..+.+++..+.++.....+..-++......+..|+.++..|+.+|.+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555666666666666665554444444555556666666666666666543
No 162
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.78 E-value=44 Score=35.00 Aligned_cols=28 Identities=14% Similarity=0.457 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 565 QEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 565 eE~k~qlqq~e~~Ie~Lq~eieeLe~qL 592 (1037)
..++.++..++..+..++.++..++.+.
T Consensus 94 ~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 94 ERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555444443
No 163
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.60 E-value=36 Score=40.01 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001652 575 DSTIKTLQAKINSIE 589 (1037)
Q Consensus 575 e~~Ie~Lq~eieeLe 589 (1037)
.+.+..|+.+|.+|.
T Consensus 334 KqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 334 KQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344555555555554
No 164
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=86.53 E-value=56 Score=35.96 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 573 QRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 573 q~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
+.......++.+|..|+.++.+...+
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~R 191 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENR 191 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666655554443
No 165
>PRK09087 hypothetical protein; Validated
Probab=86.47 E-value=0.42 Score=51.93 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=32.4
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..|+||..+..+++ ..+|..+... ..-.+-.++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 56899998864444 4466644322 22235569999999999999994
No 166
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=86.33 E-value=1.1e+02 Score=39.06 Aligned_cols=37 Identities=30% Similarity=0.258 Sum_probs=26.6
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 625 ~~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
++...-..+..++.+......+|.+|+++|...+...
T Consensus 584 ~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 584 QIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666677777777788888888888888665
No 167
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.09 E-value=38 Score=40.57 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~ 597 (1037)
++...++.+..+..+..+|++|+.|++..+-
T Consensus 419 l~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 419 LKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 3444455677778888888888888865443
No 168
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.93 E-value=13 Score=42.80 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 565 eE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
.....++.+..++.+.+..++.....++..+++.
T Consensus 102 n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 102 NELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334455555566666666666666666655554
No 169
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.90 E-value=0.56 Score=50.19 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=32.5
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..|+||.+++.. ...+...+..++.. .+.+..++-||.+||||||.+.
T Consensus 13 ~~~~~d~f~~~~--~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccCC--cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 568999988322 33445545555442 2345679999999999999883
No 170
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.88 E-value=34 Score=35.96 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001652 481 KELYEREKEIQDLKQEILGLRQ 502 (1037)
Q Consensus 481 ~el~~l~~eI~~Lk~Ei~~Lr~ 502 (1037)
.++.+++..+.++..++..++.
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433333
No 171
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=85.87 E-value=98 Score=40.07 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=9.9
Q ss_pred hHHhHHHHHHHHHHHHHHH
Q 001652 627 SAVSKKLEEELKKRDALIE 645 (1037)
Q Consensus 627 a~~~~KLEEel~k~d~~Ie 645 (1037)
.+....++..++.+|.+..
T Consensus 525 ~~~~~~l~~~l~~KD~~~~ 543 (980)
T KOG0980|consen 525 NNQLAQLEDLLKQKDRLAA 543 (980)
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 3444555555555555543
No 172
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.85 E-value=93 Score=41.59 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=9.9
Q ss_pred CCCHHHHHhHhHHHHH
Q 001652 440 AANMSETLSSLNFSSR 455 (1037)
Q Consensus 440 ~~~~~ETLsTLrFAsR 455 (1037)
..++.++++.|..+..
T Consensus 583 ~~~~~d~l~~le~~k~ 598 (1317)
T KOG0612|consen 583 NRDLEDKLSLLEESKS 598 (1317)
T ss_pred cccHHHHHHHHHHHHH
Confidence 4466667776666644
No 173
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.85 E-value=68 Score=36.29 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001652 488 KEIQDLKQEILGLRQALKE 506 (1037)
Q Consensus 488 ~eI~~Lk~Ei~~Lr~~L~~ 506 (1037)
++|.+++.++..|+.++..
T Consensus 73 ~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 174
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.76 E-value=74 Score=36.68 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 478 DARKELYEREKEIQDLKQEILGLRQALKEANDQ 510 (1037)
Q Consensus 478 ~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q 510 (1037)
.+...+..++.+...|+.|...|+..-...+.+
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek 196 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEK 196 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH
Confidence 344555667777888888888887665544443
No 175
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.71 E-value=0.48 Score=56.71 Aligned_cols=49 Identities=27% Similarity=0.448 Sum_probs=33.5
Q ss_pred eeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 187 ~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
.|+||...... ++...|..+..++.+-=..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 59999966544 455667655555443212244 48999999999999984
No 176
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.29 E-value=7.4 Score=43.54 Aligned_cols=73 Identities=25% Similarity=0.412 Sum_probs=46.2
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHHhhhc---CCc--cceeeeccCCCCccccccc--------------CC---CCC
Q 001652 187 DFEFDRVYGPHVGQAELFSDV-QPFVQSALD---GYN--VSIFAYGQTHSGKTHTMEG--------------SS---HDR 243 (1037)
Q Consensus 187 ~F~FD~VF~~~asQ~eVF~eV-~pLV~svLd---GyN--~~IfAYGQTGSGKTyTM~G--------------s~---~~~ 243 (1037)
...+..|=+-+..-++|-+.| -|+...-+- |.+ -.|+.||+.|+|||...-. +. .--
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl 230 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 230 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence 344555666666666777666 466655431 333 3589999999999854422 11 113
Q ss_pred ChHHHHHHHHHHhhcc
Q 001652 244 GLYARCFEELFDLSNS 259 (1037)
Q Consensus 244 GIIpRal~~LF~~i~~ 259 (1037)
|==||.++++|....+
T Consensus 231 gegprmvrdvfrlake 246 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLAKE 246 (408)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 5559999999987654
No 177
>PRK01156 chromosome segregation protein; Provisional
Probab=85.29 E-value=1.3e+02 Score=39.16 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.6
Q ss_pred ceeeeccCCCCccccc
Q 001652 221 SIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1037)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999774
No 178
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.56 E-value=17 Score=44.93 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=7.2
Q ss_pred eEeecCCcEEEEecC
Q 001652 163 VVEFTDDCTIRVNTG 177 (1037)
Q Consensus 163 ~v~~~d~~tI~v~~~ 177 (1037)
+.-+.|...|+|..+
T Consensus 131 v~~fEdeT~I~VsR~ 145 (652)
T COG2433 131 VSVFEDETKITVSRG 145 (652)
T ss_pred eEeeeeeeEEEEEec
Confidence 344455555555443
No 179
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=84.40 E-value=78 Score=44.12 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=27.1
Q ss_pred ccCCCCCChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 618 RTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 618 ~~~~~~~~~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
++.....+.-+...++++.+......++++.........++..+
T Consensus 381 ~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~ 424 (1822)
T KOG4674|consen 381 RPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQK 424 (1822)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444455566677777777777777666666666666655
No 180
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.27 E-value=1e+02 Score=37.03 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 482 ELYEREKEIQDLKQEILGLRQALKEAN 508 (1037)
Q Consensus 482 el~~l~~eI~~Lk~Ei~~Lr~~L~~~~ 508 (1037)
+...++.+|.+++.++..++.++.+..
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~ 86 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETA 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555444444333
No 181
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.15 E-value=55 Score=39.83 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001652 482 ELYEREKEIQDLKQEILGLRQ 502 (1037)
Q Consensus 482 el~~l~~eI~~Lk~Ei~~Lr~ 502 (1037)
.+...++++..|+.+..-|+.
T Consensus 167 kLk~~~een~~lr~k~~llk~ 187 (596)
T KOG4360|consen 167 KLKPLEEENTQLRSKAMLLKT 187 (596)
T ss_pred hcCChHHHHHHHHHHHHHHHh
Confidence 333444444555544444443
No 182
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.09 E-value=54 Score=33.71 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 536 NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 536 ~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
...+....+..++++.+|......+....+....+ .-...+.+...+.+|..++.
T Consensus 82 k~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e---k~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELESLNSSLENLLQEKEQE---KVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 33344444444555555555444444333332221 22333444444444444443
No 183
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.94 E-value=53 Score=33.45 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=15.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHH
Q 001652 627 SAVSKKLEEELKKRDALIERLHE 649 (1037)
Q Consensus 627 a~~~~KLEEel~k~d~~Ie~L~e 649 (1037)
..+..+.+-++++++.+++.|++
T Consensus 125 ~~~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 125 QQRKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455777788888876665544
No 184
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=83.79 E-value=81 Score=35.44 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 632 KLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
-|+++|+.....|++|+.+++.+.+.+..+
T Consensus 282 iLQq~Lketr~~Iq~l~k~~~q~sqav~d~ 311 (330)
T KOG2991|consen 282 ILQQKLKETRKEIQRLKKGLEQVSQAVGDK 311 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345566666678899999999999988666
No 185
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=83.65 E-value=1.2e+02 Score=40.58 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001652 636 ELKKRDALIERLHEENEKLFDRLTEKA 662 (1037)
Q Consensus 636 el~k~d~~Ie~L~eEneKL~q~l~~~~ 662 (1037)
.|..+...|..|..+.+.+.+-+..+.
T Consensus 1725 ~L~~~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1725 ALEDKAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence 444455555566666666666666553
No 186
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.64 E-value=48 Score=35.72 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 548 e~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL 592 (1037)
.+...+..++.+......+++..+...+..|..++.+...|....
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555555554443
No 187
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=83.60 E-value=1e+02 Score=36.47 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 632 KLEEELKKRDALIERLHEENEKLFDRLT 659 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEneKL~q~l~ 659 (1037)
.||--|+-++..|+=|+.|...|+|.|.
T Consensus 509 ELEVLLRVKEsEiQYLKqEissLkDELQ 536 (593)
T KOG4807|consen 509 ELEVLLRVKESEIQYLKQEISSLKDELQ 536 (593)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888888873
No 188
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.59 E-value=95 Score=36.10 Aligned_cols=27 Identities=37% Similarity=0.420 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 633 LEEELKKRDALIERLHEENEKLFDRLT 659 (1037)
Q Consensus 633 LEEel~k~d~~Ie~L~eEneKL~q~l~ 659 (1037)
.++++......+..+....+.+...+.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555554443
No 189
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.49 E-value=70 Score=34.52 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001652 572 QQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 572 qq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
.....++..++.++..|+..+.+
T Consensus 167 ~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 167 KEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655544
No 190
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=83.40 E-value=77 Score=37.95 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 573 QRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 573 q~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
+.+..+..++.+++--+.|++++...
T Consensus 243 ~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 243 EHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhh
Confidence 34566667777776666666665554
No 191
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=83.29 E-value=0.82 Score=52.23 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=26.3
Q ss_pred ChhhHHhchHHhHHhhhc-CCccceeeeccCCCCccccc
Q 001652 199 GQAELFSDVQPFVQSALD-GYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 199 sQ~eVF~eV~pLV~svLd-GyN~~IfAYGQTGSGKTyTM 236 (1037)
..++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 344444455555555554 45568999999999999987
No 192
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=83.23 E-value=82 Score=38.82 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 001652 640 RDALIERLHEENEKLFDRLTE 660 (1037)
Q Consensus 640 ~d~~Ie~L~eEneKL~q~l~~ 660 (1037)
-...+..|+.+..++..+|..
T Consensus 335 a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 335 ASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHhHHhhHHHHHHHHHHHHHH
Confidence 334445555555555555533
No 193
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.22 E-value=46 Score=43.68 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=31.8
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 625 ~~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
...++..++|+.++..+..++++...+.+|...+++.
T Consensus 399 ~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~ 435 (1141)
T KOG0018|consen 399 HELERRAELEARIKQLKESVERLDKRRNKLAAKITSL 435 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999988776
No 194
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.18 E-value=21 Score=41.01 Aligned_cols=40 Identities=5% Similarity=0.025 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1037)
Q Consensus 551 ~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~ 590 (1037)
.+.+.....+.....+...+....+..++..+..++.|++
T Consensus 95 ~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 95 EEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444455566666677777777777663
No 195
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.15 E-value=46 Score=36.88 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 542 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1037)
Q Consensus 542 ~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~q 591 (1037)
.++.....+..+++-+.+......+....+..+..+...|..++++++.+
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555544444444444444444455555555555443
No 196
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=83.02 E-value=66 Score=33.88 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001652 575 DSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 575 e~~Ie~Lq~eieeLe~qL 592 (1037)
+.+|..++.+|+.++-++
T Consensus 137 ~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 137 DTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666666544
No 197
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.72 E-value=84 Score=34.84 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 483 LYEREKEIQDLKQEILGLRQALKE 506 (1037)
Q Consensus 483 l~~l~~eI~~Lk~Ei~~Lr~~L~~ 506 (1037)
+..+...+.+++.+.+.|+.++..
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555443
No 198
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=82.68 E-value=0.85 Score=50.55 Aligned_cols=49 Identities=22% Similarity=0.144 Sum_probs=35.0
Q ss_pred eecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCccccccc
Q 001652 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1037)
Q Consensus 188 F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 238 (1037)
|.|..+-.....+..+|..+..+++.+-.|.| ++-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 44333334455788888888888777764444 67899999999999843
No 199
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=82.59 E-value=1e+02 Score=35.63 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 478 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVL 513 (1037)
Q Consensus 478 ~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~ 513 (1037)
+....+.+....-..+..++..|+..+....++...
T Consensus 118 dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~ 153 (309)
T PF09728_consen 118 DIQAQMEEQSERNIKLREENEELREKLKSLIEQYEL 153 (309)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444445666777777777666655543
No 200
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=81.97 E-value=80 Score=34.09 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 001652 640 RDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 640 ~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
....+..+..|+..|.+.+.++
T Consensus 169 ~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778888888888776
No 201
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.90 E-value=0.77 Score=46.15 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=20.3
Q ss_pred HhHHhhhcC-CccceeeeccCCCCccccccc
Q 001652 209 PFVQSALDG-YNVSIFAYGQTHSGKTHTMEG 238 (1037)
Q Consensus 209 pLV~svLdG-yN~~IfAYGQTGSGKTyTM~G 238 (1037)
.+++.+-.+ .+.-++..++||||||++|..
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 333333333 455667778999999999963
No 202
>PRK08727 hypothetical protein; Validated
Probab=81.88 E-value=0.75 Score=50.02 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=28.2
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcCCc-cceeeeccCCCCcccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN-VSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN-~~IfAYGQTGSGKTyTM~ 237 (1037)
..|+||.-+...+ + ....+..+. .|+. -.|+-||++||||||.+.
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~~~----~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQALA----AGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHHHH----hccCCCeEEEECCCCCCHHHHHH
Confidence 4578998664433 2 222222222 2332 359999999999999984
No 203
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.82 E-value=97 Score=37.36 Aligned_cols=34 Identities=32% Similarity=0.313 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 628 ~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
..-++||..+...++.|++-.+.+++|+..+..-
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 3445666666666666666666666666655443
No 204
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.76 E-value=86 Score=37.42 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=8.5
Q ss_pred cccCCcchhhhhhhcCC
Q 001652 724 IKTTPAGEYLTAALNDF 740 (1037)
Q Consensus 724 ~kttpag~~~~~~~~~~ 740 (1037)
++-++.|.+..||-||+
T Consensus 225 ~d~d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDK 241 (459)
T ss_pred eeecCCCceEEeecCCC
Confidence 33445555555555554
No 205
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.61 E-value=67 Score=37.87 Aligned_cols=44 Identities=2% Similarity=0.225 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 550 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 550 ~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
..+.++++.++.+.-.+....+..+..++..+..++++.+.++.
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555556666666665553
No 206
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=81.42 E-value=68 Score=36.78 Aligned_cols=17 Identities=47% Similarity=0.548 Sum_probs=7.2
Q ss_pred HHHhHHHHHHHHHHHHH
Q 001652 533 KSENYMLADKHKIEKEQ 549 (1037)
Q Consensus 533 ~~e~~~l~~~~k~~ke~ 549 (1037)
..++.|+..+++.++..
T Consensus 69 ~aENt~L~SkLe~EKq~ 85 (305)
T PF14915_consen 69 KAENTMLNSKLEKEKQN 85 (305)
T ss_pred HHHHHHHhHHHHHhHHH
Confidence 33444444444443333
No 207
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.31 E-value=1.3 Score=51.21 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=25.3
Q ss_pred hhhHHhchHHhHHhhhc-CCccceeeeccCCCCccccc
Q 001652 200 QAELFSDVQPFVQSALD-GYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 200 Q~eVF~eV~pLV~svLd-GyN~~IfAYGQTGSGKTyTM 236 (1037)
-++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 34444445555555554 45567899999999999987
No 208
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=81.24 E-value=57 Score=31.93 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
...++..+..+|..++.++..++..+...+..
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEYKKY 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666655544433
No 209
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.17 E-value=22 Score=38.62 Aligned_cols=29 Identities=10% Similarity=0.305 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 478 DARKELYEREKEIQDLKQEILGLRQALKE 506 (1037)
Q Consensus 478 ~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~ 506 (1037)
.++..+..++.++.+|+.++..++....+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~ 118 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQ 118 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34556667777888888877777776653
No 210
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.94 E-value=0.79 Score=52.21 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=35.4
Q ss_pred eeecceeeCCCCChhhHHhchHHhHHhhhcC-CccceeeeccCCCCccccccc
Q 001652 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTMEG 238 (1037)
Q Consensus 187 ~F~FD~VF~~~asQ~eVF~eV~pLV~svLdG-yN~~IfAYGQTGSGKTyTM~G 238 (1037)
..+||.+-..+..+..++..+...++....| ..-.++-||++|+||||.+.+
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4566665433346666776666677665543 234699999999999999954
No 211
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=80.91 E-value=59 Score=36.94 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001652 573 QRDSTIKTLQAKINSIE 589 (1037)
Q Consensus 573 q~e~~Ie~Lq~eieeLe 589 (1037)
.++.++..++.+|+.|+
T Consensus 281 ~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 281 GFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp T-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34566666666666653
No 212
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=80.85 E-value=84 Score=37.08 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=30.9
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 469 IKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQ 519 (1037)
Q Consensus 469 i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elq 519 (1037)
..+...+...++..+.....|-.+|+.+...+++.+....+.+....+|.+
T Consensus 280 ~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAq 330 (442)
T PF06637_consen 280 TTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQ 330 (442)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666777777777777777766666666655444444444443
No 213
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.77 E-value=1.4e+02 Score=37.87 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001652 642 ALIERLHEENEKLFDRLT 659 (1037)
Q Consensus 642 ~~Ie~L~eEneKL~q~l~ 659 (1037)
..+.-|++|++.|...+.
T Consensus 275 ~tv~~LqeE~e~Lqskl~ 292 (716)
T KOG4593|consen 275 ETVGLLQEELEGLQSKLG 292 (716)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 334457778877776663
No 214
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=80.68 E-value=97 Score=34.24 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 486 REKEIQDLKQEILGLRQALKEAND 509 (1037)
Q Consensus 486 l~~eI~~Lk~Ei~~Lr~~L~~~~~ 509 (1037)
++..|.+++.++..+++.+.....
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a 52 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIA 52 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544433
No 215
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=80.65 E-value=1.1e+02 Score=41.20 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
.+.++++.+..++.|+..++..+.+..+.
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~kR~~~se~ 241 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNSQRQREAER 241 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777776666665544443
No 216
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=80.51 E-value=85 Score=39.75 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 570 QIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 570 qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
+..+.-+.++.|.++++.+++++.+.
T Consensus 210 ermaAle~kn~L~~e~~s~kk~l~~~ 235 (916)
T KOG0249|consen 210 ERMAALEDKNRLEQELESVKKQLEEM 235 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666777777777666543
No 217
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.42 E-value=98 Score=34.09 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 632 KLEEELKKRDALIERLHEENEKLFDRL 658 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEneKL~q~l 658 (1037)
+|+.+|.........+..+.+..+..|
T Consensus 208 ~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 208 RLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555544
No 218
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.39 E-value=1.2e+02 Score=35.19 Aligned_cols=18 Identities=6% Similarity=0.200 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001652 632 KLEEELKKRDALIERLHE 649 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~e 649 (1037)
.++.++...+..+..+..
T Consensus 250 ~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 250 EAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 219
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.14 E-value=55 Score=42.77 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=12.1
Q ss_pred eeeccCCCCccccc
Q 001652 223 FAYGQTHSGKTHTM 236 (1037)
Q Consensus 223 fAYGQTGSGKTyTM 236 (1037)
|-.|+.||||+..+
T Consensus 46 mIiGpNGSGKSSiV 59 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIV 59 (1072)
T ss_pred eEECCCCCCchHHH
Confidence 66799999999876
No 220
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.04 E-value=70 Score=39.76 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=17.5
Q ss_pred hHhHHHHHHHHHHHHHHhcCCcchhhhh
Q 001652 774 EHEILAEIRDAVFAFIRKMEPTRVMDTM 801 (1037)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1037)
-++|=+.+..|-.-| |.-+=.+.+|+-
T Consensus 516 ~~~V~~~f~~Ae~lF-~~~~Y~~al~~~ 542 (569)
T PRK04778 516 NEEVAEALNEAERLF-REYDYKAALEII 542 (569)
T ss_pred CHHHHHHHHHHHHHH-HhCChHHHHHHH
Confidence 455556666777777 777666666654
No 221
>PF15294 Leu_zip: Leucine zipper
Probab=80.01 E-value=47 Score=37.79 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEV 518 (1037)
Q Consensus 485 ~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~El 518 (1037)
-+.++|.+|+.|++.|+..+...+.+|.....|-
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek 162 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEK 162 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999998888876655443
No 222
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.37 E-value=1.2 Score=51.96 Aligned_cols=31 Identities=42% Similarity=0.637 Sum_probs=22.7
Q ss_pred chHHhHHhhhcCCccc-eeeeccCCCCccccc
Q 001652 206 DVQPFVQSALDGYNVS-IFAYGQTHSGKTHTM 236 (1037)
Q Consensus 206 eV~pLV~svLdGyN~~-IfAYGQTGSGKTyTM 236 (1037)
.+..++..++.|.-.. ++.||.||+|||.|+
T Consensus 28 ~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 28 QLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3444555566555444 999999999999987
No 223
>PRK11281 hypothetical protein; Provisional
Probab=79.16 E-value=84 Score=42.22 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
.+.++++.+..++.|+..+++.+.+..+.
T Consensus 232 ~~~~~~~~~~~~~~lq~~in~kr~~~se~ 260 (1113)
T PRK11281 232 LTARIQRLEHQLQLLQEAINSKRLTLSEK 260 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777766555444
No 224
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=78.84 E-value=1.9e+02 Score=36.38 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChhHHhHHHH
Q 001652 555 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLE 634 (1037)
Q Consensus 555 ~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~~~KLE 634 (1037)
++...+...+..+..++...+..|..++..+.....++-.+...... +...-.+.-.-+.
T Consensus 182 e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~de--------------------e~~~k~aev~lim 241 (629)
T KOG0963|consen 182 EREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDE--------------------EVAAKAAEVSLIM 241 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh--------------------hhHHHHHHHHHHH
Confidence 33444444455556666677777777777766666666554443111 0001111122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 635 EELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 635 Eel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
-++..-...|..|.+|++.|+.++..-
T Consensus 242 ~eLe~aq~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 242 TELEDAQQRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677777888999999999998665
No 225
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=78.81 E-value=1.1e+02 Score=39.05 Aligned_cols=48 Identities=8% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 547 ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
+.+......++.++...-.+...++.........++.++..|+.++..
T Consensus 572 q~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 572 QIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444445555555555555543
No 226
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.73 E-value=1.1e+02 Score=37.59 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 483 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQ 562 (1037)
Q Consensus 483 l~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle 562 (1037)
.+.+...+..++.|+..|+.+-.....+.... . .++ ..+..++.++....+..+....+.+...-+++.+..+
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~-~-~ke-----q~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~E 233 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTY-E-EKE-----QQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQE 233 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcch-h-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777778877776654433221111 1 111 1112223333333333334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 563 LEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 563 ~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
....+-.+|..++.+|..+..+.+++..-|-
T Consensus 234 e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555666666666666555443
No 227
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=78.73 E-value=1.5e+02 Score=37.94 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=10.7
Q ss_pred HHhhccceeeeecCCC
Q 001652 937 WLAENFEFLSVTGDDA 952 (1037)
Q Consensus 937 ~~~~~~~~~~~~~~~~ 952 (1037)
.|.+.|||+-+-..-.
T Consensus 651 ~l~~~yD~IiID~pp~ 666 (754)
T TIGR01005 651 HARLYSDCVVVDVGTA 666 (754)
T ss_pred HHHhhCCEEEEcCCCc
Confidence 3577899988754433
No 228
>PRK08181 transposase; Validated
Probab=78.51 E-value=1 Score=50.50 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=17.7
Q ss_pred cCCccceeeeccCCCCccccccc
Q 001652 216 DGYNVSIFAYGQTHSGKTHTMEG 238 (1037)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~G 238 (1037)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 89999999999999854
No 229
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.48 E-value=1.3 Score=52.42 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=31.9
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 185 ~k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
...|+||....... +...|..+..+ ...-.+.---+|-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~g~~-N~~A~aa~~~v-a~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVGPS-NRLAYAAAKAV-AENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeCCc-hHHHHHHHHHH-HhccCCcCCcEEEECCCCCCHHHHHH
Confidence 36799999665444 44444332222 22222334458999999999999994
No 230
>PRK06526 transposase; Provisional
Probab=77.98 E-value=1.1 Score=49.88 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=17.4
Q ss_pred cCCccceeeeccCCCCccccccc
Q 001652 216 DGYNVSIFAYGQTHSGKTHTMEG 238 (1037)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~G 238 (1037)
.+.| |+.||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3555 79999999999999964
No 231
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=77.90 E-value=1.5e+02 Score=37.57 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 483 LYEREKEIQDLKQEILGLRQALKEAND 509 (1037)
Q Consensus 483 l~~l~~eI~~Lk~Ei~~Lr~~L~~~~~ 509 (1037)
.+.+-++|..|......||..+.....
T Consensus 529 ee~~~kqie~Lee~~~~Lrneles~~e 555 (786)
T PF05483_consen 529 EEKMLKQIENLEETNTQLRNELESVKE 555 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554445544444333
No 232
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=77.74 E-value=1.2e+02 Score=38.00 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHhhccceeeeecCCC
Q 001652 928 GELQRQIRSWLAENFEFLSVTGDDA 952 (1037)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1037)
|-.-...|-|++-+--||-.+-.|.
T Consensus 565 ~qY~n~~r~wv~Sg~tfltaS~qd~ 589 (861)
T KOG1899|consen 565 GQYMNEVRRWVRSGRTFLTASPQDY 589 (861)
T ss_pred HHHHHHHHHHHhcCchhhcCCHHHH
Confidence 3334455666666777776655543
No 233
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.59 E-value=38 Score=42.03 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=10.2
Q ss_pred CChHHHHHHHHHHhhc
Q 001652 243 RGLYARCFEELFDLSN 258 (1037)
Q Consensus 243 ~GIIpRal~~LF~~i~ 258 (1037)
.|.|.+....|=+.+.
T Consensus 163 h~av~~~~reIee~L~ 178 (652)
T COG2433 163 HGAVKRVVREIEEKLD 178 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677777776665554
No 234
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.42 E-value=24 Score=37.57 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 539 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1037)
Q Consensus 539 l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe 589 (1037)
+..+++...+.+.+....+..+..+..-+..++...+.++..|+.++.+|=
T Consensus 128 L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 128 LEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444433433333444555555555555555555553
No 235
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.33 E-value=0.94 Score=42.37 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=14.7
Q ss_pred eeeeccCCCCccccccc
Q 001652 222 IFAYGQTHSGKTHTMEG 238 (1037)
Q Consensus 222 IfAYGQTGSGKTyTM~G 238 (1037)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999953
No 236
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=77.32 E-value=1.6 Score=52.35 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=35.1
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHHhh--hcC--CccceeeeccCCCCcccccc
Q 001652 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSA--LDG--YNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 185 ~k~F~FD~VF~~~asQ~eVF~eV~pLV~sv--LdG--yN~~IfAYGQTGSGKTyTM~ 237 (1037)
...|+||.-... .++...|..+..+.+.. ..| || .+|-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 477999997653 35556666665555433 223 44 37789999999999984
No 237
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.29 E-value=3e+02 Score=38.14 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=22.0
Q ss_pred HHHHHhhcc-CCCCCCCCCC--ccccccccccCCCcc
Q 001652 396 GDVLSSLTS-RKDIVPYENS--MLTKVLADSLGESSK 429 (1037)
Q Consensus 396 g~VI~ALs~-k~~hIPYRdS--KLTrLLqdSLGGnSk 429 (1037)
..+|..+.. +++.++|+-. +|+.+|.++|..-+.
T Consensus 183 ~~l~~~l~~lr~P~Ls~~~~~~~l~~~l~~~l~~l~~ 219 (1353)
T TIGR02680 183 AALLDLLIQLRQPQLSKKPDEGVLSDALTEALPPLDD 219 (1353)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHhCCCCCH
Confidence 344444432 5567777765 599999999966443
No 238
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.25 E-value=2.2e+02 Score=37.66 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=24.9
Q ss_pred eccCCCCcccccccCCCCCChHHHHHHHHHHhhccC-----cccccccceeEEEEEE
Q 001652 225 YGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD-----TTATARFNFAVTVFEL 276 (1037)
Q Consensus 225 YGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~-----~~~~~~~~V~VS~lEI 276 (1037)
.|-.||||+--.. -|.-.+.+.|.++... -..+..-.|---++||
T Consensus 31 VGrNGSGKSNFF~-------AIrFVLSDey~hLk~E~R~gLlHEGsG~~V~sA~VEI 80 (1200)
T KOG0964|consen 31 VGRNGSGKSNFFH-------AIRFVLSDEYSHLKREERQGLLHEGSGAMVMSASVEI 80 (1200)
T ss_pred ecCCCCCchhhHH-------HhhhhcccchhhcCHHHHhhhhhcCCCcceEEEEEEE
Confidence 5889999996653 2444555666554211 1123334555556676
No 239
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=77.14 E-value=1.4 Score=41.59 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.0
Q ss_pred CccceeeeccCCCCccccc
Q 001652 218 YNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM 236 (1037)
....++-+|++|+|||+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4456889999999999876
No 240
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.13 E-value=1.1e+02 Score=32.92 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 546 ~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL 592 (1037)
++.++.+++.+...+....+....++...+..++.++.++...+.+.
T Consensus 136 Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 136 LEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444445555555555555555443
No 241
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=76.77 E-value=2e+02 Score=35.59 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001652 574 RDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 574 ~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
....+..|+.++..++.+|.
T Consensus 335 a~~~v~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 335 ASSEVSSLEAELNKTRSELE 354 (522)
T ss_pred HHhHHhhHHHHHHHHHHHHH
Confidence 34455566666666665553
No 242
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.41 E-value=1.4e+02 Score=33.73 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001652 487 EKEIQDLKQEILGLRQALKE 506 (1037)
Q Consensus 487 ~~eI~~Lk~Ei~~Lr~~L~~ 506 (1037)
......|...+..|...+..
T Consensus 12 ~~h~~~L~~~N~~L~~~Iqd 31 (258)
T PF15397_consen 12 KKHEDFLTKLNKELIKEIQD 31 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHh
Confidence 33334444444444444433
No 243
>PRK10436 hypothetical protein; Provisional
Probab=76.32 E-value=1.1 Score=53.76 Aligned_cols=28 Identities=36% Similarity=0.293 Sum_probs=23.7
Q ss_pred hHHhhhcCCccceeeeccCCCCcccccc
Q 001652 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
.+..++..-++.|+..|+||||||.||+
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4555667788999999999999999995
No 244
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.08 E-value=1.1 Score=57.25 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=23.5
Q ss_pred hchHHhHHhhhc--CCccceeeeccCCCCccccc
Q 001652 205 SDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 205 ~eV~pLV~svLd--GyN~~IfAYGQTGSGKTyTM 236 (1037)
+.+..++..++. |-+.|+|-||+||+|||.|+
T Consensus 765 eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 765 KEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 335555566554 44567899999999999998
No 245
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=76.06 E-value=30 Score=32.53 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChhHHhHHHHHHHHHHHHHHHH
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIER 646 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~~~KLEEel~k~d~~Ie~ 646 (1037)
++.++......+..++.++.+++.-+.++......+...+.....+... +.......|++.....+..|+.
T Consensus 10 l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~---------~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 10 LNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQ---------DKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEE---------EHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHh---------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666555555444444332222222 4455555666666666666655
Q ss_pred HHHHHHHHHHHh
Q 001652 647 LHEENEKLFDRL 658 (1037)
Q Consensus 647 L~eEneKL~q~l 658 (1037)
+......+..++
T Consensus 81 l~~~~~~l~~~l 92 (106)
T PF01920_consen 81 LEKQLKYLEKKL 92 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 246
>PRK12704 phosphodiesterase; Provisional
Probab=75.78 E-value=2.1e+02 Score=35.43 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=22.3
Q ss_pred HHHhccchhHhHHHHHHHHHHHHHHhcCCcchhh
Q 001652 766 VIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD 799 (1037)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1037)
.|||. |=.|+.+.++..+-.+|+..--..+++
T Consensus 278 ~i~P~--~iee~~~~~~~~~~~~~~~~ge~~~~~ 309 (520)
T PRK12704 278 RIHPA--RIEEMVEKARKEVDEEIREEGEQAVFE 309 (520)
T ss_pred CcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66765 667888888888777777665555554
No 247
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.76 E-value=1.1e+02 Score=40.11 Aligned_cols=18 Identities=39% Similarity=0.259 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHhhcCC
Q 001652 313 NPLEFSKVLKSAFQSRGN 330 (1037)
Q Consensus 313 s~~e~~~lL~~g~~~R~~ 330 (1037)
+-.+++.+|..+--.|++
T Consensus 117 tk~evvnLLESAGFSrsN 134 (1200)
T KOG0964|consen 117 TKGEVVNLLESAGFSRSN 134 (1200)
T ss_pred cHHHHHHHHHhcCcccCC
Confidence 356778888776554443
No 248
>PRK06921 hypothetical protein; Provisional
Probab=75.75 E-value=1.6 Score=48.63 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=24.9
Q ss_pred hHHhchHHhHHhhhc---CCccceeeeccCCCCcccccc
Q 001652 202 ELFSDVQPFVQSALD---GYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 202 eVF~eV~pLV~svLd---GyN~~IfAYGQTGSGKTyTM~ 237 (1037)
.++..+...++.+-+ +..-.++-||++|+||||.+.
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 345444566665532 234568999999999999984
No 249
>PRK00106 hypothetical protein; Provisional
Probab=75.74 E-value=2.2e+02 Score=35.52 Aligned_cols=63 Identities=25% Similarity=0.387 Sum_probs=40.7
Q ss_pred cccCCcchhhhhhhcCCCCCCcccchhhccchhhHHHHHHHHHHHhc---cchhHhHHHHHHHHHHHHHHhcCCcchhhh
Q 001652 724 IKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAG---ASREHEILAEIRDAVFAFIRKMEPTRVMDT 800 (1037)
Q Consensus 724 ~kttpag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1037)
++-||-- . .|..|||=--| || .+.|--.|+=| .+|=.|+....+.-|...|++.--..|+|.
T Consensus 261 iddtp~~--v--~lS~fdpvRRe----iA-------r~~le~Li~dgrIhp~rIEe~v~k~~~e~~~~i~~~Ge~a~~~l 325 (535)
T PRK00106 261 IDDTPEV--V--VLSGFDPIRRE----IA-------RMTLESLIKDGRIHPARIEELVEKNRLEMDNRIREYGEAAAYEI 325 (535)
T ss_pred EcCCCCe--E--EEeCCChHHHH----HH-------HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5556632 2 37889995433 22 23444455555 356678889999999999988777777774
Q ss_pred h
Q 001652 801 M 801 (1037)
Q Consensus 801 ~ 801 (1037)
=
T Consensus 326 g 326 (535)
T PRK00106 326 G 326 (535)
T ss_pred C
Confidence 3
No 250
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.67 E-value=51 Score=40.39 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 629 VSKKLEEELKKRDALIERLHEENEKLFDRLT 659 (1037)
Q Consensus 629 ~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~ 659 (1037)
-..++.-+|+.++=.+++.+|++-|+...|.
T Consensus 374 ~glk~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 374 AGLKRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666653
No 251
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=75.54 E-value=1.2 Score=54.72 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.2
Q ss_pred hHHhhhcCCccceeeeccCCCCcccccc
Q 001652 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4566777788999999999999999985
No 252
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.50 E-value=1.6e+02 Score=33.98 Aligned_cols=25 Identities=20% Similarity=0.204 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 484 YEREKEIQDLKQEILGLRQALKEAN 508 (1037)
Q Consensus 484 ~~l~~eI~~Lk~Ei~~Lr~~L~~~~ 508 (1037)
..++.+-..|.-++.-|+..+...+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~e 125 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELE 125 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445544444444433
No 253
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.40 E-value=2.1e+02 Score=35.32 Aligned_cols=52 Identities=25% Similarity=0.430 Sum_probs=35.7
Q ss_pred hcCCCCCCcccchhhccchhhHHHHHHHHHHHhc---cchhHhHHHHHHHHHHHHHHhcCCcchhh
Q 001652 737 LNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAG---ASREHEILAEIRDAVFAFIRKMEPTRVMD 799 (1037)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1037)
|..|||=--| || -+.|--+|.=| .+|=.|+.+..+.-|...|++.-..-|||
T Consensus 249 ls~fdp~rre----ia-------~~~l~~li~dgrihp~riee~~~~~~~~~~~~i~~~g~~~~~~ 303 (514)
T TIGR03319 249 LSGFDPVRRE----IA-------RMALEKLIQDGRIHPARIEEMVEKATKEVDNAIREEGEQAAFD 303 (514)
T ss_pred ecCCchHHHH----HH-------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889985433 22 22333444444 35667888999999999999988888887
No 254
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.34 E-value=2.2e+02 Score=35.46 Aligned_cols=42 Identities=7% Similarity=0.099 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 551 ~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL 592 (1037)
.++.+++..+.....++...+..........+..+..++..+
T Consensus 386 eel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 386 EEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344443333333344444444333
No 255
>PRK11281 hypothetical protein; Provisional
Probab=75.32 E-value=80 Score=42.43 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 567 ~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
.+.+..-...+++.++.+++.|+..++.....
T Consensus 225 ~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~ 256 (1113)
T PRK11281 225 LQKQRDYLTARIQRLEHQLQLLQEAINSKRLT 256 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777777777777777664333
No 256
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=75.22 E-value=1.5 Score=49.31 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=27.9
Q ss_pred ecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 189 ~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
+||.+.+ |.++.+.+..++. .|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 4676664 5555555544443 3443358889999999999883
No 257
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.96 E-value=3e+02 Score=36.77 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 480 RKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAW 522 (1037)
Q Consensus 480 ~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~ 522 (1037)
.+.++..+.....+..+++.++.++...+........+++...
T Consensus 309 ~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~ 351 (1141)
T KOG0018|consen 309 EKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERS 351 (1141)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666666666555555555555443
No 258
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=74.91 E-value=66 Score=39.43 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 555 NQVAQLLQLEQEQKMQIQQRDSTIKTLQ 582 (1037)
Q Consensus 555 ~ql~qlle~eeE~k~qlqq~e~~Ie~Lq 582 (1037)
.|+.-+-++...+++++....++|+.|+
T Consensus 487 ~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 487 EQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444445555443
No 259
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=74.56 E-value=1.5 Score=53.06 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=23.8
Q ss_pred hHHhhhcCCccceeeeccCCCCcccccc
Q 001652 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556677778899999999999999995
No 260
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=74.53 E-value=0.94 Score=57.22 Aligned_cols=32 Identities=34% Similarity=0.465 Sum_probs=0.0
Q ss_pred HhHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh
Q 001652 629 VSKKLEEELKK---RDALIERLHEENEKLFDRLTE 660 (1037)
Q Consensus 629 ~~~KLEEel~k---~d~~Ie~L~eEneKL~q~l~~ 660 (1037)
....||+++++ +..+++.++.++..|...+..
T Consensus 347 ~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 347 TKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 344445455555555554433
No 261
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=74.43 E-value=2.9e+02 Score=38.25 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=13.2
Q ss_pred ceeeeccCCCCccccc
Q 001652 221 SIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1037)
.++--|++|||||.+|
T Consensus 26 ~~~~~G~NGsGKS~~l 41 (1353)
T TIGR02680 26 RLLLRGNNGAGKSKVL 41 (1353)
T ss_pred eEEEECCCCCcHHHHH
Confidence 3455699999999988
No 262
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=74.41 E-value=1.1 Score=43.10 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=13.4
Q ss_pred ccceeeeccCCCCccccc
Q 001652 219 NVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1037)
+.+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467999999999999987
No 263
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=74.22 E-value=1.3e+02 Score=32.41 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 484 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWK 523 (1037)
Q Consensus 484 ~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k 523 (1037)
...-.+|..|++.+.+|+..-++..+-|-.+..+-|+..+
T Consensus 51 Q~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk 90 (195)
T PF10226_consen 51 QQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK 90 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH
Confidence 3344556666666666665555555555445444444433
No 264
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=74.19 E-value=1.4 Score=44.66 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=18.9
Q ss_pred HhchHHhHHhhhcCCccceeeeccCCCCccccc
Q 001652 204 FSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 204 F~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
++.+..+++....|...+++-+|.+|+|||+.+
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 344555555445677788999999999999986
No 265
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.19 E-value=1.6e+02 Score=33.20 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=5.9
Q ss_pred cccCCcchh
Q 001652 724 IKTTPAGEY 732 (1037)
Q Consensus 724 ~kttpag~~ 732 (1037)
|..||+.+.
T Consensus 239 ~pltp~aRi 247 (333)
T KOG1853|consen 239 VPLTPDARI 247 (333)
T ss_pred CCCCchhhH
Confidence 557887663
No 266
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.04 E-value=1.5e+02 Score=35.62 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.4
Q ss_pred cCCCCCCcccchhhccchh
Q 001652 738 NDFNPEQYDNLAVISDGAN 756 (1037)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~ 756 (1037)
.||||+-|--+||-.|++-
T Consensus 225 ~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred eeecCCCceEEeecCCCce
Confidence 6899999999999999853
No 267
>PF13245 AAA_19: Part of AAA domain
Probab=73.99 E-value=1.5 Score=39.89 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=17.8
Q ss_pred HHhhhcCCccceeeeccCCCCccccc
Q 001652 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
|..++. -+..+.-.|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 444555 3444555999999999998
No 268
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=73.94 E-value=9.5 Score=42.22 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=34.8
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCcccceeEEEEEEEEEEeeccCCceeeeeEEEEEecCCccc
Q 001652 310 KVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGL 372 (1037)
Q Consensus 310 ~V~s~~e~~~lL~~g~~~R~~~~t~SSRSH~IftI~V~~~~~~~g~~~~SkL~LVDLAGSER~ 372 (1037)
...+++++...+..+...- ..+...-|.-++.|+|...+. -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~~--~~~~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDRV--TGTNKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHHh--cCCCCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 3456778777777654321 111223466688888877653 36999999999643
No 269
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=73.73 E-value=1.2e+02 Score=31.80 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 001652 475 IANDARKELYEREKEIQDLKQEI 497 (1037)
Q Consensus 475 i~~~~~~el~~l~~eI~~Lk~Ei 497 (1037)
+....+.+...+..++.+++.++
T Consensus 21 I~E~~R~E~~~l~~EL~evk~~v 43 (159)
T PF05384_consen 21 IAEQARQEYERLRKELEEVKEEV 43 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 270
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=73.63 E-value=1.3 Score=47.52 Aligned_cols=16 Identities=44% Similarity=0.673 Sum_probs=13.9
Q ss_pred ceeeeccCCCCccccc
Q 001652 221 SIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1037)
-+.-+|.||||||+|+
T Consensus 25 H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTV 40 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3567899999999999
No 271
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.58 E-value=1.6e+02 Score=36.36 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 478 DARKELYEREKEIQDLKQEILGLRQALKEA 507 (1037)
Q Consensus 478 ~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~ 507 (1037)
++.+...+++.+.+..+.|++.+++.+.+.
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666443
No 272
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=73.49 E-value=2.8e+02 Score=35.77 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh
Q 001652 545 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQ---AKINSIESQRNEALH 597 (1037)
Q Consensus 545 ~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq---~eieeLe~qL~e~~~ 597 (1037)
.+.|++..++.++.+...+.+-.+-+ .++.++.|+ ..-..|+++|...+.
T Consensus 132 rl~Ee~~~l~~qlee~~rLk~iae~q---leEALesl~~EReqk~~LrkEL~~~~~ 184 (717)
T PF09730_consen 132 RLEEEIELLNSQLEEAARLKEIAEKQ---LEEALESLKSEREQKNALRKELDQHLN 184 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555555566665555444322222 333333333 334456666665443
No 273
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.33 E-value=45 Score=34.67 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 001652 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEY-----SNAKIDRVTRYLGVLADKTRKLD 115 (1037)
Q Consensus 57 ~k~~l~~~v~~l~~~l~~~~~~~~~l~~e~~~~q~~-----~~~~~~~~~~~l~~L~~~~~~l~ 115 (1037)
+-..+..++..|++++..++.++..|+.+...+... ....+..+...+..|.++...|.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888888888888776432 23344455555555555555544
No 274
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=73.32 E-value=1.8 Score=43.19 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.5
Q ss_pred hHHhhhcCCccceeeeccCCCCcccccc
Q 001652 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
++..+..|.| ++..|+||||||....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4455566777 7899999999999974
No 275
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=73.27 E-value=1.6 Score=50.27 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=21.2
Q ss_pred hHHhhhcCCccceeeeccCCCCcccccc
Q 001652 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
.+..++.--.+.|+-.|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3444444445779999999999999994
No 276
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=73.13 E-value=1.3 Score=46.86 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.7
Q ss_pred ccceeeeccCCCCcccccc
Q 001652 219 NVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~ 237 (1037)
++.|+-.|+||||||.|+.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678999999999999984
No 277
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=73.04 E-value=2.5e+02 Score=35.03 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 571 IQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 571 lqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
++......+.....+.++..++...
T Consensus 519 l~sl~~~~~~~~~r~~~~~~~l~~~ 543 (607)
T KOG0240|consen 519 LQSLQEPSEHQSKRITELLSELRKD 543 (607)
T ss_pred HHhhhhcccchhHHHHHHHHHHHhh
Confidence 3333444444445555555555443
No 278
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.95 E-value=1.2e+02 Score=33.58 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=42.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 535 ENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 535 e~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
++..|.......-+++.+....+..+.....+.+.+.......|..+..++..|+.+.++...+
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344555555666666666666677777777888888888888888888877665
No 279
>PF12846 AAA_10: AAA-like domain
Probab=72.74 E-value=1.4 Score=48.10 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=16.4
Q ss_pred ccceeeeccCCCCcccccc
Q 001652 219 NVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~ 237 (1037)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5568899999999999983
No 280
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=72.71 E-value=20 Score=37.78 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 58 KQALSTKVQRLKDEIKFVKEDYLELRQEATDLQE 91 (1037)
Q Consensus 58 k~~l~~~v~~l~~~l~~~~~~~~~l~~e~~~~q~ 91 (1037)
-+.|.-++++|.++++.+...+..+..+...++.
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888777777777777766654
No 281
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=72.70 E-value=1.5e+02 Score=32.27 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 484 YEREKEIQDLKQEILGLRQALKEANDQCVLL 514 (1037)
Q Consensus 484 ~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l 514 (1037)
..+...|..|+.+++.-+..+..+..++...
T Consensus 7 a~lnrri~~leeele~aqErl~~a~~KL~Ea 37 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLATALQKLEEA 37 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666555555554444333
No 282
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.68 E-value=2.2 Score=47.90 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=28.3
Q ss_pred Hhch--HHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 204 FSDV--QPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 204 F~eV--~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
|+++ .++++.+.--..+.|+..|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 5553 577888877888999999999999999983
No 283
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.21 E-value=2.3e+02 Score=34.20 Aligned_cols=31 Identities=35% Similarity=0.386 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001652 632 KLEEELKKRDALIERLHEENEKLFDRLTEKA 662 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEneKL~q~l~~~~ 662 (1037)
+.+++-....++|+.|..+.+-+..+....+
T Consensus 364 rfq~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 364 RFQEEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777788888888888887777765553
No 284
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.16 E-value=1.2e+02 Score=31.16 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhH
Q 001652 484 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK 533 (1037)
Q Consensus 484 ~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~ 533 (1037)
.+...+-..|+..+..|+..+.........+..+.....+...+++..+.
T Consensus 13 K~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~ 62 (140)
T PF10473_consen 13 KESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELE 62 (140)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666665555544444444444444444444443
No 285
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=72.12 E-value=1.5 Score=40.87 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.7
Q ss_pred cceeeeccCCCCcccccc
Q 001652 220 VSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM~ 237 (1037)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 468889999999999984
No 286
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.91 E-value=1.7e+02 Score=32.49 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001652 490 IQDLKQEILGLRQAL 504 (1037)
Q Consensus 490 I~~Lk~Ei~~Lr~~L 504 (1037)
+.+++.++..++.+.
T Consensus 22 L~~~~~~l~~~~~~~ 36 (302)
T PF10186_consen 22 LLELRSELQQLKEEN 36 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 287
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.55 E-value=2.6e+02 Score=34.67 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=14.0
Q ss_pred HhhhhhhHHHhhhchhhcc
Q 001652 999 NSQLQHLKVCLKHWLELSW 1017 (1037)
Q Consensus 999 ~~~~~~~~~~~~~~~~~~~ 1017 (1037)
..|+.||+....|-.++||
T Consensus 566 ~~qik~lq~av~~~~~~~~ 584 (772)
T KOG0999|consen 566 SDQIKHLQKAVDHTKELSR 584 (772)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777
No 288
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=71.52 E-value=1.3 Score=56.02 Aligned_cols=24 Identities=46% Similarity=0.551 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 631 KKLEEELKKRDALIERLHEENEKL 654 (1037)
Q Consensus 631 ~KLEEel~k~d~~Ie~L~eEneKL 654 (1037)
.+++.++..+.+.++.|..+.+.+
T Consensus 387 ~~l~~e~~~L~ek~~~l~~eke~l 410 (713)
T PF05622_consen 387 DKLEFENKQLEEKLEALEEEKERL 410 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 289
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=71.52 E-value=36 Score=41.17 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001652 575 DSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 575 e~~Ie~Lq~eieeLe~qL~ 593 (1037)
++++..++..+.+|..+|.
T Consensus 122 ~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444455555566665554
No 290
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.48 E-value=1.3e+02 Score=37.20 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=9.6
Q ss_pred HhhhhhhHHHhhhc
Q 001652 999 NSQLQHLKVCLKHW 1012 (1037)
Q Consensus 999 ~~~~~~~~~~~~~~ 1012 (1037)
...|+.|.+|+..+
T Consensus 436 ~~rl~~le~i~~~~ 449 (514)
T TIGR03319 436 IKRLEKLEEIANSF 449 (514)
T ss_pred HHHHHHHHHHHHhC
Confidence 44567888887654
No 291
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.41 E-value=2.1e+02 Score=35.19 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=31.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 001652 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAS 663 (1037)
Q Consensus 626 ~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~~~ 663 (1037)
...++-.+.+..++.+.-|++|+-|.++-+..+...++
T Consensus 387 leelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~~s 424 (613)
T KOG0992|consen 387 LEELKVQFTAKQEKHAETIKELEIELEEYRRAILRNAS 424 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 44566677778888999999999999999999988874
No 292
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=71.00 E-value=1.7 Score=45.25 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=22.0
Q ss_pred hHHhHHhhhcCCccceeeeccCCCCccccc
Q 001652 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 207 V~pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
+..+.+.+-.|.+.+++-||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344544445577889999999999999987
No 293
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=70.92 E-value=2.1 Score=50.20 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=17.2
Q ss_pred CccceeeeccCCCCcccccc
Q 001652 218 YNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~ 237 (1037)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678899999999999993
No 294
>PRK10865 protein disaggregation chaperone; Provisional
Probab=70.74 E-value=10 Score=49.31 Aligned_cols=45 Identities=29% Similarity=0.297 Sum_probs=29.1
Q ss_pred eecceeeCCCCChhhHHhchHHhHHhhhcCCc------cceeeeccCCCCccccc
Q 001652 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYN------VSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 188 F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN------~~IfAYGQTGSGKTyTM 236 (1037)
.-+.+|++ |...-..|...|..+..|.+ ++++-+|+||+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 44666776 44554445444444443332 57888899999999976
No 295
>PLN03188 kinesin-12 family protein; Provisional
Probab=70.48 E-value=3.8e+02 Score=36.54 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001652 572 QQRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 572 qq~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
.+++.+..-|++++..|+.||+
T Consensus 1169 ~ereker~~~~~enk~l~~qlr 1190 (1320)
T PLN03188 1169 VEREKERRYLRDENKSLQAQLR 1190 (1320)
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 3456667777788888888875
No 296
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=69.89 E-value=2.2 Score=49.73 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.4
Q ss_pred CCccceeeeccCCCCcccccc
Q 001652 217 GYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM~ 237 (1037)
-.++.|+-.|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 356889999999999999984
No 297
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.62 E-value=1.4e+02 Score=38.74 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=23.3
Q ss_pred hhccCCh-hHHHHHHHHHHhhccceeeeecCCCCCCccc
Q 001652 921 LFVHTPA-GELQRQIRSWLAENFEFLSVTGDDASGGTTG 958 (1037)
Q Consensus 921 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1037)
++||--- |-|++.|+.||..+=...+..-....-|..|
T Consensus 737 ~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~G 775 (782)
T PRK00409 737 LIIHGKGTGKLRKGVQEFLKKHPSVKSFRDAPPNEGGFG 775 (782)
T ss_pred EEEcCCChhHHHHHHHHHHcCCCceeeeeecCcccCCCe
Confidence 4566432 7888888888887765555554444434444
No 298
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.28 E-value=2.3e+02 Score=35.25 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=34.9
Q ss_pred hhccchhhHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHhcCCcchhhhhhhhhhhHHHHHHhhhcCcccccccccch
Q 001652 750 VISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPV 829 (1037)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1037)
..|.|-=+.+||.+|.|..+-..-. +|===||..-+|.--..+|. -+|+.+ ++ ..|-|-|+--
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~-------------~lilDEp~~gld~~~~~~~~-~~l~~l-~~--~~~vi~iTH~ 502 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVT-------------TLIFDEVDVGVSGETAQAIA-KKLAQL-SE--RHQVLCVTHL 502 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCC-------------EEEEECCCCCCCHHHHHHHH-HHHHHH-hc--CCEEEEEECh
Confidence 4677877788888777764210000 11112566666665444443 244444 22 4566666655
Q ss_pred hhhhh
Q 001652 830 ECFLE 834 (1037)
Q Consensus 830 ~~~~~ 834 (1037)
-.+..
T Consensus 503 ~~~~~ 507 (563)
T TIGR00634 503 PQVAA 507 (563)
T ss_pred HHHHH
Confidence 55543
No 299
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=69.19 E-value=1.8e+02 Score=31.73 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001652 486 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI-EKEQNAQLRNQVAQLLQLE 564 (1037)
Q Consensus 486 l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~-~ke~~~eL~~ql~qlle~e 564 (1037)
++.-|.+++..+...+..+......-..+..++..........+.....-...-.+-+-. --.+......+...+....
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~ 108 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1037)
Q Consensus 565 eE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~ 596 (1037)
..++..+.+....+..|+.++++++.+...+.
T Consensus 109 ~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 109 AAVEETLAKLQEDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 300
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=69.18 E-value=3 Score=45.42 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=18.1
Q ss_pred hhcCCccceeeeccCCCCccccc
Q 001652 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
.+......++-+|++|||||+++
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHH
Confidence 34444567888999999999887
No 301
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=69.11 E-value=2.7e+02 Score=33.75 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 001652 482 ELYEREKEIQDLKQEILGLRQALKEAN-----DQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQ 556 (1037)
Q Consensus 482 el~~l~~eI~~Lk~Ei~~Lr~~L~~~~-----~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~q 556 (1037)
+...+-..+.+|+.-++.||......+ .++..+..++....+....++..+..+.-.|....+.+-+.+.+.++.
T Consensus 214 ~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqf 293 (424)
T PF03915_consen 214 ESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQF 293 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 334555667777777777776654322 233344445555555555555556555555555555444444444433
Q ss_pred H
Q 001652 557 V 557 (1037)
Q Consensus 557 l 557 (1037)
+
T Consensus 294 L 294 (424)
T PF03915_consen 294 L 294 (424)
T ss_dssp H
T ss_pred H
Confidence 3
No 302
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=68.90 E-value=6.9 Score=45.02 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=20.2
Q ss_pred HHhHHhhhcCCccceeeeccCCCCccccc
Q 001652 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 208 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
..++..++.+. ..|+-.|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 35566666553 55666799999999877
No 303
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=68.68 E-value=1.8e+02 Score=35.06 Aligned_cols=27 Identities=30% Similarity=0.355 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 476 ANDARKELYEREKEIQDLKQEILGLRQ 502 (1037)
Q Consensus 476 ~~~~~~el~~l~~eI~~Lk~Ei~~Lr~ 502 (1037)
.+.+..+++.++.+++..+.-++.|++
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~ 171 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQ 171 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444455544444444443
No 304
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=68.60 E-value=2.6 Score=47.02 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=22.7
Q ss_pred HhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 209 PFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 209 pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..+..++..-.+.|+-.|.||||||.||.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 34455666666789999999999999994
No 305
>PRK12704 phosphodiesterase; Provisional
Probab=68.51 E-value=1.6e+02 Score=36.39 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=21.3
Q ss_pred hhhHHHHHhhhhhhcCCCCCCCCchHHhhHHHHHHHHHHHhhhhhhHHHhhhc
Q 001652 960 LELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKVCLKHW 1012 (1037)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1037)
++.--.++-|.+-++.- .|-+-.+..|-+ .|.-|..|+..+
T Consensus 415 ~~a~IV~~ADaLsa~Rp-------gar~~~~e~~i~-----rl~~le~i~~~~ 455 (520)
T PRK12704 415 IEAVLVAAADAISAARP-------GARRETLENYIK-----RLEKLEEIANSF 455 (520)
T ss_pred HHHHHHHHHHHHhCcCC-------CCccccHHHHHH-----HHHHHHHHHHhC
Confidence 45555666675544432 122245556655 455666666543
No 306
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=68.33 E-value=1.6e+02 Score=30.94 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 486 REKEIQDLKQEILGLRQALKEANDQCVLL 514 (1037)
Q Consensus 486 l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l 514 (1037)
...+...|+.|+..++..+.....+...+
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~evD~L 53 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIEEVDKL 53 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655544444333
No 307
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.03 E-value=68 Score=31.18 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 001652 569 MQIQQRDSTIKTLQAKINSIESQRNEALHSSEVR 602 (1037)
Q Consensus 569 ~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~ 602 (1037)
.+++.....+..++.++.+.+.-+.+...-...+
T Consensus 17 ~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~ 50 (110)
T TIGR02338 17 QQLQAVATQKQQVEAQLKEAEKALEELERLPDDT 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 3444455555566666666666555544444443
No 308
>PRK10698 phage shock protein PspA; Provisional
Probab=67.91 E-value=1.9e+02 Score=31.70 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001652 486 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI-EKEQNAQLRNQVAQLLQLE 564 (1037)
Q Consensus 486 l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~-~ke~~~eL~~ql~qlle~e 564 (1037)
++.-|.++++.+..++..+.........+..++..........+.....-...-.+-+-. --.+......++..+....
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~ 108 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEV 108 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1037)
Q Consensus 565 eE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~ 596 (1037)
......+.++...+..|+.++.+++.+...+.
T Consensus 109 ~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 109 TLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 309
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=67.63 E-value=1e+02 Score=37.19 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCCcccchhhc
Q 001652 733 LTAALNDFNPEQYDNLAVIS 752 (1037)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~ 752 (1037)
+-....-.+|||=.-+-||-
T Consensus 356 VL~EV~aL~PDHE~RLeAIe 375 (424)
T PF03915_consen 356 VLGEVRALQPDHESRLEAIE 375 (424)
T ss_dssp --------------------
T ss_pred HHHHHHhcCCCcHHHHHHHH
Confidence 33444556788877777773
No 310
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=67.58 E-value=2.6e+02 Score=35.82 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHhcCCcchhh
Q 001652 756 NKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD 799 (1037)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1037)
||++++++++|+=. +=+..+.|++-|=-++|.+
T Consensus 429 ~~~~~l~~~~~~gl-----------~lg~~~a~l~e~~d~~i~s 461 (754)
T TIGR01005 429 KKGPIVGLAAVLGL-----------LLGAIFALLRELFSGRAMR 461 (754)
T ss_pred chHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccCC
Confidence 77777777776432 2346677777664444443
No 311
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=67.45 E-value=2.7e+02 Score=33.10 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccccccccCC----CCcccccccccCC
Q 001652 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS---SEVRSTIRSE----PMPAVSSVLRTTG 621 (1037)
Q Consensus 549 ~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~---~~~~s~~~~~----~~~~~~~~~~~~~ 621 (1037)
.+..+..++.+..+...+++.++..-..+|...+..|..|+.-+...... .+.|.-.+.. -.+-......+..
T Consensus 245 vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~ 324 (384)
T PF03148_consen 245 VNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIE 324 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHH
Confidence 44455555666666666666677777777777777777777655432221 1221111110 0011111122323
Q ss_pred CCCChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 622 DGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 622 ~~~~~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
+...+..--..|.+.|..-+..+..|..-..+|-..+..|
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K 364 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVK 364 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555555555554443
No 312
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=67.28 E-value=1.3e+02 Score=37.16 Aligned_cols=12 Identities=17% Similarity=0.083 Sum_probs=5.2
Q ss_pred ccCCCCcccccc
Q 001652 226 GQTHSGKTHTME 237 (1037)
Q Consensus 226 GQTGSGKTyTM~ 237 (1037)
+-+|+||=-+.|
T Consensus 222 l~~~~~k~a~f~ 233 (518)
T PF10212_consen 222 LTNGTGKIAAFF 233 (518)
T ss_pred HHhhhHHHHHHH
Confidence 334444444443
No 313
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.97 E-value=2.4e+02 Score=37.60 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHhhcc-CCCCCC
Q 001652 390 KSLSALGDVLSSLTS-RKDIVP 410 (1037)
Q Consensus 390 kSLsaLg~VI~ALs~-k~~hIP 410 (1037)
..|++|-.--+|=.= ++++++
T Consensus 376 ETlSTLEYA~RAKnIkNKPevN 397 (1041)
T KOG0243|consen 376 ETLSTLEYAHRAKNIKNKPEVN 397 (1041)
T ss_pred HHHHHHHHHHHhhhccCCCccc
Confidence 456666554444332 344443
No 314
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=66.56 E-value=2.1 Score=47.10 Aligned_cols=29 Identities=38% Similarity=0.573 Sum_probs=20.0
Q ss_pred hHHhHHhhhcCCccceeeeccCCCCccccc
Q 001652 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 207 V~pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
+..++..++.+ .+.|+-.|.||||||.+|
T Consensus 116 ~~~~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 116 IAEFLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHHHHhhcccc-ceEEEEECCCccccchHH
Confidence 33444444333 456778899999999998
No 315
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=66.27 E-value=2.8e+02 Score=33.08 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001652 576 STIKTLQAKINSIESQ 591 (1037)
Q Consensus 576 ~~Ie~Lq~eieeLe~q 591 (1037)
.+|.+|++++..++..
T Consensus 324 nEi~nLKqElasmeer 339 (455)
T KOG3850|consen 324 NEIANLKQELASMEER 339 (455)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555433
No 316
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.15 E-value=1.4e+02 Score=30.34 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1037)
Q Consensus 547 ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe 589 (1037)
.+...+.++++..+..........+......+..|+.+|.+++
T Consensus 81 ~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 81 KEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444555555666666666666554
No 317
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.78 E-value=3.8e+02 Score=34.26 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 629 VSKKLEEELKKRDALIERLHEENEKLF 655 (1037)
Q Consensus 629 ~~~KLEEel~k~d~~Ie~L~eEneKL~ 655 (1037)
.-.-|.++++..+..+.+++.-..++.
T Consensus 276 tv~~LqeE~e~Lqskl~~~~~l~~~~~ 302 (716)
T KOG4593|consen 276 TVGLLQEELEGLQSKLGRLEKLQSTLL 302 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344667777777777776665544443
No 318
>PRK00106 hypothetical protein; Provisional
Probab=65.77 E-value=2.9e+02 Score=34.38 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=21.3
Q ss_pred hhhHHHHHhhhhhhcCCCCCCCCchHHhhHHHHHHHHHHHhhhhhhHHHhhhc
Q 001652 960 LELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKVCLKHW 1012 (1037)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1037)
.+..--++-|-+-++.=.+- +--+..|-|| |+.|.+|+..+
T Consensus 430 ~~a~IV~~AD~lsa~Rpgar-------~~s~~~~i~r-----l~~lE~ia~~~ 470 (535)
T PRK00106 430 VIAVIVAAADALSSARPGAR-------NESMENYIKR-----LRDLEEIANSF 470 (535)
T ss_pred hHHHHHHHHHHhccCCCCCC-------cCCHHHHHHH-----HHHHHHHHhcC
Confidence 34444555666655542222 2234455554 56777777654
No 319
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=65.70 E-value=3.1e+02 Score=33.19 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001652 483 LYEREKEIQDLKQEILGLRQALKEA-----NDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQV 557 (1037)
Q Consensus 483 l~~l~~eI~~Lk~Ei~~Lr~~L~~~-----~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql 557 (1037)
-..+-..+++|++-++.||...... ..++....+++....+....++.-+..+.-.|.+-.+.+-+.+++.++.+
T Consensus 219 Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL 298 (426)
T smart00806 219 SDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFL 298 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777888888887776432 23555566677766666677777788777777776666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001652 558 AQLLQLEQEQKMQIQQRDS 576 (1037)
Q Consensus 558 ~qlle~eeE~k~qlqq~e~ 576 (1037)
.....+..+++..+....+
T Consensus 299 ~lQedL~~DL~dDL~ka~e 317 (426)
T smart00806 299 TLQEDLIADLKEDLEKAEE 317 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333
No 320
>PRK09343 prefoldin subunit beta; Provisional
Probab=65.50 E-value=1.5e+02 Score=29.53 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001652 564 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1037)
Q Consensus 564 eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~ 599 (1037)
.+..+..+...+...+.++..+.+++.++.+.....
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333446667777777788888888888887765553
No 321
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.43 E-value=3.3e+02 Score=36.11 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=5.4
Q ss_pred ecCCcEEEEe
Q 001652 166 FTDDCTIRVN 175 (1037)
Q Consensus 166 ~~d~~tI~v~ 175 (1037)
+++|..|.+.
T Consensus 17 f~~GsIvrI~ 26 (1072)
T KOG0979|consen 17 FPDGSIVRIE 26 (1072)
T ss_pred CCCCceEEEE
Confidence 5556555543
No 322
>PRK01156 chromosome segregation protein; Provisional
Probab=65.36 E-value=4.2e+02 Score=34.66 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=4.5
Q ss_pred cchhhhHHH
Q 001652 957 TGQLELLST 965 (1037)
Q Consensus 957 ~~~~~~~~~ 965 (1037)
.|+-..++-
T Consensus 804 ~G~~~~~~l 812 (895)
T PRK01156 804 GGEKTAVAF 812 (895)
T ss_pred HhHHHHHHH
Confidence 345555554
No 323
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.19 E-value=2.2e+02 Score=34.12 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001652 547 KEQNAQLRNQVAQLLQLEQE-QKMQIQQRDSTIKTLQAKINSIE 589 (1037)
Q Consensus 547 ke~~~eL~~ql~qlle~eeE-~k~qlqq~e~~Ie~Lq~eieeLe 589 (1037)
+.++..|.+.++.+.++.+. ..+......+-++..+.+|..||
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444443332 23444566778888888888888
No 324
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.18 E-value=1.2e+02 Score=34.59 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 479 ARKELYEREKEIQDLKQEILGLRQAL 504 (1037)
Q Consensus 479 ~~~el~~l~~eI~~Lk~Ei~~Lr~~L 504 (1037)
++..+.+.+..+.+=..||.+||.+|
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL 98 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQL 98 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333333333333444444444
No 325
>PRK09343 prefoldin subunit beta; Provisional
Probab=65.09 E-value=85 Score=31.26 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001652 569 MQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1037)
Q Consensus 569 ~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~ 599 (1037)
.+++.....+..++.++.+.+.-+.+...-.
T Consensus 21 ~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~ 51 (121)
T PRK09343 21 QQLERLLQQKSQIDLELREINKALEELEKLP 51 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444445555556666666665555544433
No 326
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=64.86 E-value=3.3 Score=46.29 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=27.4
Q ss_pred CCChhhHHhchHHhHHhhhcC--CccceeeeccCCCCcccccc
Q 001652 197 HVGQAELFSDVQPFVQSALDG--YNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 197 ~asQ~eVF~eV~pLV~svLdG--yN~~IfAYGQTGSGKTyTM~ 237 (1037)
-..|+++.+.+..++.....+ ....++-||++|+|||+...
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 345777777766666554332 22346779999999998873
No 327
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.80 E-value=1.4e+02 Score=29.00 Aligned_cols=30 Identities=10% Similarity=0.296 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 566 EQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 566 E~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
.++..+...+..+..++.++.+++.++.+.
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666677777777777666543
No 328
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=64.62 E-value=3.3 Score=43.91 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=20.7
Q ss_pred HhHHhhhcCCccceeeeccCCCCccccc
Q 001652 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 209 pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
..|..++...+-.++..|..||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 3455566555555666899999999998
No 329
>PRK11519 tyrosine kinase; Provisional
Probab=64.59 E-value=4e+02 Score=34.17 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=14.4
Q ss_pred CcceeEEEeeCCCCCCHHHHHhHh
Q 001652 427 SSKTLMIVNICPNAANMSETLSSL 450 (1037)
Q Consensus 427 nSkTlmI~~ISPs~~~~~ETLsTL 450 (1037)
++.++-|-.-++++.-....+++|
T Consensus 226 ~S~ii~Is~~~~dP~~Aa~iaN~l 249 (719)
T PRK11519 226 DTGVLSLTYTGEDREQIRDILNSI 249 (719)
T ss_pred CceEEEEEEEcCCHHHHHHHHHHH
Confidence 355566666667666555555555
No 330
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=64.46 E-value=3 Score=42.01 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=19.8
Q ss_pred ceeeeccCCCCcccccccCCCCCChHHHHHHHHHHh
Q 001652 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDL 256 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~ 256 (1037)
.+--.|.||+||||+- ..+.+.||..
T Consensus 55 VlSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred EEEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 4456799999999975 5667778863
No 331
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=64.41 E-value=1.5e+02 Score=32.48 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=35.6
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 469 IKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEV 518 (1037)
Q Consensus 469 i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~El 518 (1037)
|.-++.-..++..++.....+|-.|+..+..++..+...+..+..+....
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~ 61 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL 61 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33445556677777778888899999988888888877766665554433
No 332
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=64.32 E-value=2.1e+02 Score=30.74 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 633 LEEELKKRDALIERLHEENEKLFDRLT 659 (1037)
Q Consensus 633 LEEel~k~d~~Ie~L~eEneKL~q~l~ 659 (1037)
++.+.++..+.|+-|+..|..|.+.++
T Consensus 161 ~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 161 RQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555566666666666666654
No 333
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=64.22 E-value=2.5 Score=45.16 Aligned_cols=16 Identities=44% Similarity=0.457 Sum_probs=14.6
Q ss_pred ceeeeccCCCCccccc
Q 001652 221 SIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1037)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4788999999999998
No 334
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.01 E-value=60 Score=35.74 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=28.1
Q ss_pred CCCCcccchhhccchhhHHHHHHHHHHHhccchhH--hHHHHHHHH
Q 001652 741 NPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH--EILAEIRDA 784 (1037)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 784 (1037)
.|+..++.--|-+|--|..-.+|..|-=|-.|||. |-|.=|+-|
T Consensus 226 ~p~die~~~~~~~~~e~e~~i~lg~~~iaapsREdave~l~iik~a 271 (290)
T COG4026 226 APKDIEGQGYIYAEDEKEVEILLGTVYIAAPSREDAVEELEIIKEA 271 (290)
T ss_pred CchhccceeeeecccccccceeeeeeeeecCchHHHHHHHHHHHHH
Confidence 35555555556677777666677777767777777 555555554
No 335
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=63.78 E-value=3.6 Score=43.16 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=15.9
Q ss_pred cceeeeccCCCCccccccc
Q 001652 220 VSIFAYGQTHSGKTHTMEG 238 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM~G 238 (1037)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3589999999999999854
No 336
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=63.75 E-value=21 Score=42.97 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=14.1
Q ss_pred ceeeeccCCCCccccc
Q 001652 221 SIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1037)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999887
No 337
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=63.44 E-value=2e+02 Score=36.64 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=13.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHH
Q 001652 626 SSAVSKKLEEELKKRDALIERLHE 649 (1037)
Q Consensus 626 ~a~~~~KLEEel~k~d~~Ie~L~e 649 (1037)
..+...-|+++...+++++.+|..
T Consensus 306 ep~kv~~l~~q~w~r~qq~~vl~~ 329 (916)
T KOG0249|consen 306 EPEKVQTLNEQEWARDQQAQVLAN 329 (916)
T ss_pred chHHHHHHHHHHHHHHHHHHhccc
Confidence 344455566666666666665543
No 338
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.37 E-value=1.9e+02 Score=36.75 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=13.2
Q ss_pred cchhhhhhhcCCCCCCcccchh
Q 001652 729 AGEYLTAALNDFNPEQYDNLAV 750 (1037)
Q Consensus 729 ag~~~~~~~~~~~~~~~~~~~~ 750 (1037)
+-+|++.+....+-|.-+.+|+
T Consensus 337 ~~~f~~~~~ds~~~d~~ell~~ 358 (660)
T KOG4302|consen 337 RRRFITYLIDSGTEDVLELLEN 358 (660)
T ss_pred HHHHHHHHHHhccCCHHHHHHH
Confidence 4456666666666666666666
No 339
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=63.02 E-value=2.8 Score=39.87 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.3
Q ss_pred ceeeeccCCCCccccc
Q 001652 221 SIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1037)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999876
No 340
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.95 E-value=2.1e+02 Score=36.09 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.2
Q ss_pred ceeeeccCCCCccccc
Q 001652 221 SIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1037)
+++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999876
No 341
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=62.94 E-value=3.8 Score=46.60 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 208 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..++..++.+ ...|+-.|.||||||.+|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3555555554 4568899999999999983
No 342
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=62.53 E-value=72 Score=33.12 Aligned_cols=95 Identities=26% Similarity=0.238 Sum_probs=66.8
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 48 SALPHSSEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQ-------EYSNAKIDRVTRYLGVLADKTRKLDQVALE 120 (1037)
Q Consensus 48 ~~~~~~~~~~k~~l~~~v~~l~~~l~~~~~~~~~l~~e~~~~q-------~~~~~~~~~~~~~l~~L~~~~~~l~~~~~e 120 (1037)
.+-.++-+.-|.....+|+..-..+......+..+++++.-+- +....+++.+.++|+.|..-+.+-+..+.+
T Consensus 37 ~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEyke 116 (159)
T PF04949_consen 37 RAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKE 116 (159)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444556666677777766666666666666676665442 245567888889999998888888888888
Q ss_pred HHHhcCchHHHhhhhhhhcccC
Q 001652 121 AEARISPLINEKKRLFNDLLTA 142 (1037)
Q Consensus 121 ~e~r~~~~~~eRrkLhN~l~el 142 (1037)
+-+.+.+..+++-.|.+.|++|
T Consensus 117 alea~nEknkeK~~Lv~~L~eL 138 (159)
T PF04949_consen 117 ALEAFNEKNKEKAQLVTRLMEL 138 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777778887887777664
No 343
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.40 E-value=3.1e+02 Score=32.05 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 630 SKKLEEELKKRDALIERLHEENEKLFDRL 658 (1037)
Q Consensus 630 ~~KLEEel~k~d~~Ie~L~eEneKL~q~l 658 (1037)
.++|-..+.+...++++|..+...+.|..
T Consensus 128 re~lV~qLEk~~~q~~qLe~d~qs~lDEk 156 (319)
T PF09789_consen 128 REDLVEQLEKLREQIEQLERDLQSLLDEK 156 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444
No 344
>PF13479 AAA_24: AAA domain
Probab=61.94 E-value=3.2 Score=44.54 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.1
Q ss_pred ccceeeeccCCCCccccccc
Q 001652 219 NVSIFAYGQTHSGKTHTMEG 238 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~G 238 (1037)
+..|+-||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 56789999999999998754
No 345
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.41 E-value=3.9e+02 Score=32.90 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001652 632 KLEEELKKRDALIERLHEENEKLFDRLTE 660 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEneKL~q~l~~ 660 (1037)
.|.++++.+.++-.++..|-.+|-+.|+.
T Consensus 169 ~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56777888888888888888888888854
No 346
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=61.16 E-value=62 Score=36.25 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=26.8
Q ss_pred hHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhccCCCC
Q 001652 630 SKKLEEELKK-------RDALIERLHEENEKLFDRLTEKASSVS 666 (1037)
Q Consensus 630 ~~KLEEel~k-------~d~~Ie~L~eEneKL~q~l~~~~~~~~ 666 (1037)
-..||+++++ +...++.|+.+|.||++++....+..+
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~ 138 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNN 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 4455666555 556667789999999999988866654
No 347
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=60.82 E-value=1.7e+02 Score=28.59 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001652 569 MQIQQRDSTIKTLQAKINSI 588 (1037)
Q Consensus 569 ~qlqq~e~~Ie~Lq~eieeL 588 (1037)
.++......|..++..+...
T Consensus 88 ~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 348
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.50 E-value=4.7e+02 Score=33.60 Aligned_cols=21 Identities=14% Similarity=0.446 Sum_probs=13.7
Q ss_pred HHHHHHhhccceeeeecCCCC
Q 001652 933 QIRSWLAENFEFLSVTGDDAS 953 (1037)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~ 953 (1037)
++-.||.+.|||+-+-..-..
T Consensus 632 ~ll~~l~~~yD~IIIDtPP~~ 652 (726)
T PRK09841 632 QLLEWANDHYDLVIVDTPPML 652 (726)
T ss_pred HHHHHHHhcCCEEEEeCCCcc
Confidence 344677788888877555443
No 349
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=60.47 E-value=3.7e+02 Score=32.38 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001652 632 KLEEELKKRDALIERLHEENEKLFDRLTE 660 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEneKL~q~l~~ 660 (1037)
...+++......+..+..+.++..+++..
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556666666666677776666666533
No 350
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=60.38 E-value=2.7e+02 Score=30.81 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 551 ~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
..+...+.+..+....++..+...+.+|..++.+.+.+.....
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444333444444555555555555555555544333
No 351
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=60.29 E-value=4.8e+02 Score=34.00 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 001652 640 RDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 640 ~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
+...++.|..|.+|+.|.+.+-
T Consensus 1090 ~ehelenLrnEieklndkIkdn 1111 (1424)
T KOG4572|consen 1090 KEHELENLRNEIEKLNDKIKDN 1111 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 4556788889999999988765
No 352
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.08 E-value=4.5e+02 Score=33.25 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=14.2
Q ss_pred hhccCChhHHHHHHHHHHhhc
Q 001652 921 LFVHTPAGELQRQIRSWLAEN 941 (1037)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~ 941 (1037)
+++-||-|-|-..=|.=|+++
T Consensus 578 ~iiD~p~~~lD~~~r~~l~~~ 598 (650)
T TIGR03185 578 VIIDTPLGRLDSSHRENLVVN 598 (650)
T ss_pred EEEcCCccccChHHHHHHHHH
Confidence 567888888776666655554
No 353
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=60.01 E-value=2.3e+02 Score=34.84 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001652 575 DSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 575 e~~Ie~Lq~eieeLe~qL~ 593 (1037)
...+.....++..|..++.
T Consensus 361 ~~k~~~ke~E~q~lr~~l~ 379 (511)
T PF09787_consen 361 QLKLKEKESEIQKLRNQLS 379 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555553
No 354
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=60.00 E-value=1.1e+02 Score=33.60 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001652 485 EREKEIQDLKQEILGLRQALKEA 507 (1037)
Q Consensus 485 ~l~~eI~~Lk~Ei~~Lr~~L~~~ 507 (1037)
.++..+..|+.++..++++++..
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~v 162 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEV 162 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544443
No 355
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.94 E-value=1.1e+02 Score=27.70 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001652 492 DLKQEILGLRQALKEAN 508 (1037)
Q Consensus 492 ~Lk~Ei~~Lr~~L~~~~ 508 (1037)
.|+.++..|+..+..+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~ 18 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLT 18 (69)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 356
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=59.86 E-value=4.3e+02 Score=32.90 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=6.6
Q ss_pred HHHHhHhHHHHH
Q 001652 444 SETLSSLNFSSR 455 (1037)
Q Consensus 444 ~ETLsTLrFAsR 455 (1037)
..-++-|+.|.|
T Consensus 228 P~ql~~Lk~Gyr 239 (570)
T COG4477 228 PGQLQDLKAGYR 239 (570)
T ss_pred hHHHHHHHHHHH
Confidence 344556666654
No 357
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=59.82 E-value=3.4 Score=39.38 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.5
Q ss_pred eeeeccCCCCccccc
Q 001652 222 IFAYGQTHSGKTHTM 236 (1037)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1037)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999987
No 358
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=59.75 E-value=3.3e+02 Score=31.58 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001652 570 QIQQRDSTIKTLQAKINSIESQRNEALHSSEV 601 (1037)
Q Consensus 570 qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~ 601 (1037)
.+...+.++..|..+..-|+++|...+.+...
T Consensus 60 avrdYqrq~~elneEkrtLeRELARaKV~aNR 91 (351)
T PF07058_consen 60 AVRDYQRQVQELNEEKRTLERELARAKVSANR 91 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34555677778888888888888777766543
No 359
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=59.49 E-value=10 Score=44.11 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=23.3
Q ss_pred hHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 207 V~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
+..++..+..++ +.|+-.|.||||||+++.
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 345666666666 779999999999999874
No 360
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=59.32 E-value=4.7 Score=41.97 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=16.6
Q ss_pred HHhhhcCCccceeeeccCCCCcccccc
Q 001652 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
|..++..-. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 444443333 56679999999999884
No 361
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=59.03 E-value=5 Score=41.95 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=21.3
Q ss_pred hHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 207 V~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
+.+++..++.. ...+.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34555555553 3457888999999999873
No 362
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=58.92 E-value=1.1e+02 Score=29.44 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001652 63 TKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARIS 126 (1037)
Q Consensus 63 ~~v~~l~~~l~~~~~~~~~l~~e~~~~q~~~~~~~~~~~~~l~~L~~~~~~l~~~~~e~e~r~~ 126 (1037)
.+...+++....++.....|.+....++.+. ..++.+...+..|.+.+..|+....+.|.+++
T Consensus 35 ~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l-~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 35 LKYKKMKDIAAGLEKNLEDLNQKYEELQPYL-QQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555443 34455555666666777777777666666543
No 363
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.87 E-value=49 Score=29.77 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 547 ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
.+.+.+|+.+++......++++..+-....+|..|+.++..|..++...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556667777777766667777777777777777777777777666543
No 364
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.67 E-value=37 Score=41.18 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 546 ~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
.+.+..+++.++..+.+..+++..+.+..+++|+.|+.+++.|+.|++
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666555555556666778888889999999988873
No 365
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=58.52 E-value=4.7 Score=46.46 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=21.1
Q ss_pred HHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 208 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
..++..++.+. ..|+-.|.||||||.+|.
T Consensus 134 ~~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 134 ASVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 35555555533 358899999999999983
No 366
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.52 E-value=1.3e+02 Score=31.33 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 484 YEREKEIQDLKQEILGLRQALKEANDQC 511 (1037)
Q Consensus 484 ~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~ 511 (1037)
..++.+|.+|+.++..|+........++
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655555444333
No 367
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=58.50 E-value=4.6 Score=47.48 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=28.5
Q ss_pred ceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEech
Q 001652 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNE 279 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~~~~V~VS~lEIYNE 279 (1037)
-|+-||.+||||||+. +.+|+..+. -.|+++++|-|+=
T Consensus 32 ~~~iyG~sgTGKT~~~--------------r~~l~~~n~-------~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV--------------RQLLRKLNL-------ENVWLNCVECFTY 69 (438)
T ss_pred eEEEeccCCCchhHHH--------------HHHHhhcCC-------cceeeehHHhccH
Confidence 3589999999999987 456665422 2688999888753
No 368
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=58.46 E-value=5 Score=46.35 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=21.9
Q ss_pred hHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 207 V~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
+..++..++.+. ..|+..|.||||||.+|.
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 455666665543 458889999999999983
No 369
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=58.38 E-value=2.1e+02 Score=28.85 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001652 558 AQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1037)
Q Consensus 558 ~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~ 597 (1037)
.++.++.+-++..+...+...+.++.++++|+..+.....
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444445566666677777777777777777755443
No 370
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=58.37 E-value=3.5e+02 Score=31.34 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001652 484 YEREKEIQDLKQEILGLRQALK 505 (1037)
Q Consensus 484 ~~l~~eI~~Lk~Ei~~Lr~~L~ 505 (1037)
..+..++..|..|+..|...|+
T Consensus 59 ~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 59 FQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HHHhhhHHHHHHHHHHHhHHHH
Confidence 3444455555555555544443
No 371
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.33 E-value=6.6 Score=46.39 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=16.3
Q ss_pred ccceeeeccCCCCccccc
Q 001652 219 NVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1037)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999998
No 372
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.09 E-value=2.1e+02 Score=28.75 Aligned_cols=21 Identities=19% Similarity=0.435 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001652 573 QRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 573 q~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
.++.++..++.++++|..|..
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554443
No 373
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=58.02 E-value=4.1e+02 Score=32.12 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001652 576 STIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 576 ~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
-.+..++.+++.++.++...
T Consensus 275 P~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 35556666666666665443
No 374
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.74 E-value=3.4e+02 Score=33.01 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 562 e~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL 592 (1037)
...+++...+....++|+.-+.....|.+++
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsel 375 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSEL 375 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444555555555554444444444444
No 375
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.67 E-value=2.9e+02 Score=34.38 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.6
Q ss_pred eeeeccCCCCccccc
Q 001652 222 IFAYGQTHSGKTHTM 236 (1037)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1037)
.+-+|.||||||-.|
T Consensus 25 ~vitG~nGaGKS~ll 39 (563)
T TIGR00634 25 TVLTGETGAGKSMII 39 (563)
T ss_pred EEEECCCCCCHHHHH
Confidence 356899999999776
No 376
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.87 E-value=5.7e+02 Score=33.39 Aligned_cols=272 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred eCCCCCCHHHHHhHhHHHHHhhhcccccCcchhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 436 ICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLY 515 (1037)
Q Consensus 436 ISPs~~~~~ETLsTLrFAsRar~I~~~~~n~~~i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~ 515 (1037)
|+....-+-|.+.-|+++.-=..-.+.-........|..+..++...+.++.+++..+..|...|...+.....-+..+.
T Consensus 47 ~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~ 126 (769)
T PF05911_consen 47 VSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELS 126 (769)
T ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001652 516 ----------NEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQ--- 582 (1037)
Q Consensus 516 ----------~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq--- 582 (1037)
..++.+.+....-...|+.+..++.+.+++..++.+--..-..-......+--..+..++.+++.|+
T Consensus 127 ~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 127 EEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHHHh----hhccccccccc---------CCCCcccccccccCCCCCChhHHhHHHHHHHHHHHH
Q 001652 583 -------AKINSIESQRNEA----LHSSEVRSTIR---------SEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDA 642 (1037)
Q Consensus 583 -------~eieeLe~qL~e~----~~~~~~~s~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~KLEEel~k~d~ 642 (1037)
.-+..|+.+...+ ......+++.+ ..+......+.-+..+.-...+-.+-|.+.|.++..
T Consensus 207 rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ 286 (769)
T PF05911_consen 207 RKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNS 286 (769)
T ss_pred hccCCChHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhccCCC----CCCCCCCCCCCCCCCccCccccccCCCCCCCCCCCCCCCCcc
Q 001652 643 LIERLHEENEKLFDRLTEKASSV----SSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSA 707 (1037)
Q Consensus 643 ~Ie~L~eEneKL~q~l~~~~~~~----~~~~~~~~~~~~~~~~q~~~~~r~~~~~~~~~~~~~~s~~~~ 707 (1037)
.++--.--+.+..-+|...-..- ..+-....+.+.+-+.....++-.+..-..+..+..+|++..
T Consensus 287 ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLis 355 (769)
T PF05911_consen 287 ELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELSSSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALIS 355 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhcccccCCCCCCcccchhHHHHhc
No 377
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=56.58 E-value=6.9 Score=38.97 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=14.8
Q ss_pred cceeeeccCCCCcccccc
Q 001652 220 VSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM~ 237 (1037)
..++..|.||||||.++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 25 RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred CcEEEECCCCCchhHHHH
Confidence 456778899999999884
No 378
>PF14992 TMCO5: TMCO5 family
Probab=56.32 E-value=2e+02 Score=32.91 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCcchhhh--hhhhhhhHHHHHHhhhc
Q 001652 781 IRDAVFAFIRKMEPTRVMDT--MLVSRVRILYIRSLLAR 817 (1037)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 817 (1037)
.-+-+|-||.-.-|.-+.|+ ++.||-++--.|.+|.=
T Consensus 231 LL~y~~f~~~fInpdll~~~LP~~L~R~tlw~LR~~l~P 269 (280)
T PF14992_consen 231 LLGYLLFYIQFINPDLLEDVLPKMLSRRTLWRLREFLFP 269 (280)
T ss_pred HHHHHHHHHhhcCcHHHHHHhHHhcchhHHHHHHHHHhh
Confidence 45677778888888887775 45678777778887753
No 379
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.31 E-value=1.4e+02 Score=26.64 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001652 574 RDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 574 ~e~~Ie~Lq~eieeLe~qL 592 (1037)
.+..+..|..+|+.|+.++
T Consensus 37 aE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 37 AEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 380
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=56.07 E-value=4e+02 Score=31.35 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=10.5
Q ss_pred hhhhHHHHHHHHHhhcc
Q 001652 388 VMKSLSALGDVLSSLTS 404 (1037)
Q Consensus 388 INkSLsaLg~VI~ALs~ 404 (1037)
||--+.+|..-+..|..
T Consensus 57 inDP~~ALqRDf~~l~E 73 (561)
T KOG1103|consen 57 INDPFAALQRDFAILGE 73 (561)
T ss_pred cCChHHHHHHHHHHHhc
Confidence 55666666666666554
No 381
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=55.93 E-value=2.9e+02 Score=33.61 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=27.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 627 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 627 a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
...+..|-+-+.++...++++-+++.+|.-+|..-
T Consensus 430 ~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerL 464 (554)
T KOG4677|consen 430 FTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERL 464 (554)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34456788888888888999999988887776554
No 382
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.92 E-value=1.3e+02 Score=36.97 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 482 ELYEREKEIQDLKQEILGLRQALKEANDQC 511 (1037)
Q Consensus 482 el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~ 511 (1037)
.+.+++++|++|+.++..++.++...+.++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666665554444
No 383
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=55.77 E-value=4.4e+02 Score=31.76 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 001652 639 KRDALIERLHEENEKLFDRLT 659 (1037)
Q Consensus 639 k~d~~Ie~L~eEneKL~q~l~ 659 (1037)
...+.+..+..+...+..++.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555543
No 384
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=55.75 E-value=1.6e+02 Score=32.41 Aligned_cols=46 Identities=41% Similarity=0.674 Sum_probs=31.6
Q ss_pred ccchhhHHHHH-----------HHHHHHhccchhHhHHHHHHHHHHHHHHhcCCcchhhhhhhhhhhHHHHHHhhh--cC
Q 001652 752 SDGANKLLMLV-----------LAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLA--RS 818 (1037)
Q Consensus 752 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 818 (1037)
.|||.-+++|| |-||++||- ...|+||.- -|= |+
T Consensus 115 ~~~~~~v~~la~~K~LPeKGKLLQAVmeAGP-------------------------LLQTLLlAG--------PLP~WRn 161 (214)
T PF07795_consen 115 VDPADAVLELAKGKPLPEKGKLLQAVMEAGP-------------------------LLQTLLLAG--------PLPQWRN 161 (214)
T ss_pred cChHHHHHHHHhCCCCCccchHHHHHHHhhh-------------------------HHHHHHHhC--------CCccccC
Confidence 37777777774 889999995 345665431 111 45
Q ss_pred c--ccccccccchh
Q 001652 819 P--ELQSIMVSPVE 830 (1037)
Q Consensus 819 ~--~~~~~~~~~~~ 830 (1037)
| -|+||+||||-
T Consensus 162 PPP~l~s~~IPpv~ 175 (214)
T PF07795_consen 162 PPPQLQSFEIPPVS 175 (214)
T ss_pred CCCccccccCCCcc
Confidence 4 57999999996
No 385
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=55.71 E-value=2.9e+02 Score=34.43 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 549 ~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
...++.+++.++.+...+....+..+...-...++.+..++..+..
T Consensus 380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 380 ELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443
No 386
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.29 E-value=1.6e+02 Score=29.12 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 568 KMQIQQRDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 568 k~qlqq~e~~Ie~Lq~eieeLe~qL 592 (1037)
..+...+...+..|+.+|.++.+.+
T Consensus 50 ~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 50 QAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666666655555
No 387
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=55.18 E-value=1.9e+02 Score=29.69 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 559 QLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1037)
Q Consensus 559 qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~ 590 (1037)
++..........+.+++.+|+.|..|++.++.
T Consensus 65 ~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 65 QLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 33333444455677788888889998888875
No 388
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=54.96 E-value=4.6e+02 Score=31.72 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 632 KLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
..+.++..++...+..+..++.+.+++.+-
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556655665666666666666543
No 389
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.95 E-value=4.1e+02 Score=31.98 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001652 58 KQALSTKVQRLKDEIKFVKE 77 (1037)
Q Consensus 58 k~~l~~~v~~l~~~l~~~~~ 77 (1037)
+..+..+|..+++.|+..+.
T Consensus 6 ~~~l~~Ki~~~~eqi~~e~~ 25 (395)
T PF10267_consen 6 IDHLQQKILKLKEQIKVEQT 25 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888776553
No 390
>PF13514 AAA_27: AAA domain
Probab=54.74 E-value=7e+02 Score=33.77 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=22.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 627 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 627 a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
......++..++.....+.+...+.+.+.+++..-
T Consensus 352 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l 386 (1111)
T PF13514_consen 352 LQEREQLEQALAQARRELEEAERELEQLQAELAAL 386 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455566666666666666777777777766544
No 391
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=54.59 E-value=4.4 Score=42.66 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=13.5
Q ss_pred ceeeeccCCCCcccccc
Q 001652 221 SIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1037)
-++.+|.||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 68999999999999983
No 392
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=54.51 E-value=4e+02 Score=30.93 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 001652 577 TIKTLQAKINSIESQR 592 (1037)
Q Consensus 577 ~Ie~Lq~eieeLe~qL 592 (1037)
+-.-||.+++.|+-+|
T Consensus 116 ERR~lQgEmQ~LrDKL 131 (351)
T PF07058_consen 116 ERRFLQGEMQQLRDKL 131 (351)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445777777777666
No 393
>PRK04406 hypothetical protein; Provisional
Probab=54.48 E-value=86 Score=28.91 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 546 ~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
+..++.+|+.+++......++++..+-+.+..|..|+.++..|..++..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566666666666666666666666666666666666666655543
No 394
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=54.34 E-value=7.2 Score=49.40 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=44.4
Q ss_pred hhhhhhhccCChhHHHHHHHHHHhhccceeeeecCCCCCCccchhhhHHHHHhhhhhhcCCCCCCCCchHHhhHHHHHHH
Q 001652 916 KALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAK 995 (1037)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 995 (1037)
|.+-++..-+|+--+.|. +|+-+-|.-+ -+. =++-+.--+ .+.-++|- ++| -+|++||-+
T Consensus 1088 ~~~r~~l~s~p~t~~kr~--~~~~~r~~~~--v~~----liek~i~tr-~sL~~~W~------~np-----~~l~ee~~~ 1147 (1172)
T KOG0926|consen 1088 KSFRALLLSKPETLTKRE--AWVLPRVGSL--VMV----LIEKKIDTR-ESLKKQWN------LNP-----NVLLEEYQN 1147 (1172)
T ss_pred ccchhhhcCCcchhHHHH--HHHhHHHHHH--HHH----HhhhccchH-hhhhhhhc------CCh-----HHHHHHHHH
Confidence 455677778888877774 6776654321 110 000011111 14557885 345 379999999
Q ss_pred HHHHhhhhhhHHH
Q 001652 996 RVYNSQLQHLKVC 1008 (1037)
Q Consensus 996 ~~~~~~~~~~~~~ 1008 (1037)
-+|+.-.+.++|.
T Consensus 1148 ~~~~~~~~~~~~l 1160 (1172)
T KOG0926|consen 1148 WFWKVFRHRVKDL 1160 (1172)
T ss_pred HHHHHHHHHhhhc
Confidence 9999988888875
No 395
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=54.07 E-value=9.5 Score=48.03 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=51.7
Q ss_pred eecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccccCC---CCCChH----HHHHHHHHHhhccC
Q 001652 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS---HDRGLY----ARCFEELFDLSNSD 260 (1037)
Q Consensus 188 F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~---~~~GII----pRal~~LF~~i~~~ 260 (1037)
|....=|.|.-.|..-|+. +++.+-+|...- ..+|.||||||+||-.-- ..+-|| .....+|+..+..-
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4444457788888776654 455555564222 378999999999996421 112111 12234444433321
Q ss_pred cccccccceeEEEEEEechhhh
Q 001652 261 TTATARFNFAVTVFELYNEQLR 282 (1037)
Q Consensus 261 ~~~~~~~~V~VS~lEIYNE~I~ 282 (1037)
- +.....+.||||.-|.-..|
T Consensus 78 ~-p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 78 F-PENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred C-CCCeEEEEeeecccCCcccc
Confidence 1 23346778999888866553
No 396
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.02 E-value=5.3e+02 Score=32.21 Aligned_cols=57 Identities=25% Similarity=0.404 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 538 MLADKHKIEKEQNAQLRNQVAQLLQL-----------EQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 538 ~l~~~~k~~ke~~~eL~~ql~qlle~-----------eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
.+.++.+..++..+.|.+.+..+.+. +.+-+.+++-...+...|..-|+-++...++
T Consensus 620 ~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 620 RLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555565555555532 3344555555556666666666666655544
No 397
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=53.72 E-value=5.1 Score=46.55 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=21.3
Q ss_pred hHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 207 V~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
+..++..+..+ ...|+-.|.||||||++|.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 44555555542 3448889999999999984
No 398
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.71 E-value=6.8 Score=46.28 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=24.7
Q ss_pred ChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 199 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 199 sQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
.|+.+...-.++..-+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 355555542333333344555567779999999998873
No 399
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=53.63 E-value=7.4 Score=43.71 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.0
Q ss_pred cCC-ccceeeeccCCCCcccccc
Q 001652 216 DGY-NVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 216 dGy-N~~IfAYGQTGSGKTyTM~ 237 (1037)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 454 3466679999999999983
No 400
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=53.55 E-value=5.5e+02 Score=35.27 Aligned_cols=19 Identities=58% Similarity=0.775 Sum_probs=14.1
Q ss_pred ccchhhhhhhccCChhHHHHHHHHHHhhcc
Q 001652 913 TGNKALAALFVHTPAGELQRQIRSWLAENF 942 (1037)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1037)
-|-|.||+|- ||-=|||+|
T Consensus 1186 AGQKvLAsli-----------IRLALAEtf 1204 (1294)
T KOG0962|consen 1186 AGQKVLASLI-----------IRLALAETF 1204 (1294)
T ss_pred chHHHHHHHH-----------HHHHHHHHH
Confidence 4667788774 777888887
No 401
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=53.52 E-value=9.9 Score=44.10 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=23.4
Q ss_pred hHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 207 V~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
+..++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 456677777654 789999999999998773
No 402
>PTZ00424 helicase 45; Provisional
Probab=53.36 E-value=6.8 Score=45.34 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=20.7
Q ss_pred HhHHhhhcCCccceeeeccCCCCccccc
Q 001652 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 209 pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
..+..+++|.|+ +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 556677889985 46789999999876
No 403
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=53.15 E-value=5.2 Score=44.95 Aligned_cols=17 Identities=41% Similarity=0.436 Sum_probs=14.2
Q ss_pred ceeeeccCCCCcccccc
Q 001652 221 SIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1037)
.|.-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45566999999999984
No 404
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=53.03 E-value=2.9e+02 Score=35.12 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001652 636 ELKKRDALIERLHEENEKLFDRLTEKA 662 (1037)
Q Consensus 636 el~k~d~~Ie~L~eEneKL~q~l~~~~ 662 (1037)
+++..+.-+.+-.++.-|.|+.+..+-
T Consensus 360 e~ea~E~rkkr~~aei~Kffqk~~~k~ 386 (811)
T KOG4364|consen 360 EVEAQELRKKRHEAEIGKFFQKIDNKF 386 (811)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccc
Confidence 455555556666788889999887764
No 405
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=53.02 E-value=40 Score=42.96 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChhHHhHHHHHHHHHHHHHHH
Q 001652 566 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 645 (1037)
Q Consensus 566 E~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~~~KLEEel~k~d~~Ie 645 (1037)
.++.++..++.++..|+.++..|+.++.... .++...+....+..++. ++...- ...+...++
T Consensus 507 ~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~--------L~g~~~~~~trVL~lr~---NP~~~~------~~~k~~~l~ 569 (722)
T PF05557_consen 507 ELQKEIEELERENERLRQELEELESELEKLT--------LQGEFNPSKTRVLHLRD---NPTSKA------EQIKKSTLE 569 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCT--BTTTEEEEEESS----HHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccccCCCCceeeeeCC---CcHHHH------HHHHHHHHH
Confidence 3455566666666777777777776664311 01111111222222222 222221 123456788
Q ss_pred HHHHHHHHHHHHhhhc
Q 001652 646 RLHEENEKLFDRLTEK 661 (1037)
Q Consensus 646 ~L~eEneKL~q~l~~~ 661 (1037)
.|+.||+.|..++...
T Consensus 570 ~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 570 ALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999544
No 406
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=53.00 E-value=3.1e+02 Score=35.62 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=23.1
Q ss_pred hhccCC-hhHHHHHHHHHHhhccceeeeecCC-CCCC
Q 001652 921 LFVHTP-AGELQRQIRSWLAENFEFLSVTGDD-ASGG 955 (1037)
Q Consensus 921 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 955 (1037)
..||-- .|-|++.|+.||..+=...+..-+. .-||
T Consensus 726 ~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG 762 (771)
T TIGR01069 726 LIIHGKGSGKLRKGVQELLKNHPKVKSFRDAPPNDGG 762 (771)
T ss_pred EEEcCCChhHHHHHHHHHhcCCcceeeecccCcccCC
Confidence 456643 3889999999999876666664333 3344
No 407
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=52.93 E-value=4.9e+02 Score=31.44 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.6
Q ss_pred HHHHhcCCcchhhhhhhh
Q 001652 787 AFIRKMEPTRVMDTMLVS 804 (1037)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~ 804 (1037)
-.|+.||-|..|-.||--
T Consensus 300 kL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 300 KLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 457888888888888753
No 408
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=52.87 E-value=5.4 Score=38.93 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.0
Q ss_pred ceeeeccCCCCccccc
Q 001652 221 SIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1037)
.|+.+|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3789999999999875
No 409
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=52.81 E-value=7.6 Score=46.29 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=20.4
Q ss_pred HhHHhhhcCCccceeeeccCCCCccccc
Q 001652 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 209 pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
..+..+++|.| ++..++||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 44556778988 777889999999764
No 410
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=52.62 E-value=3.4e+02 Score=29.58 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=38.4
Q ss_pred HHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 517 EVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1037)
Q Consensus 517 Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~ 596 (1037)
++.+..+....++..+..-...+-.......+++..+.+++..+.-..++++ ..++.+...++.+|.+|+++|....
T Consensus 76 ~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~---~~r~~e~~~YesRI~dLE~~L~~~n 152 (196)
T PF15272_consen 76 ELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQ---NERERERIAYESRIADLERQLNSRN 152 (196)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3433333334444444333333322222333444455555544433332222 1234555589999999999997544
Q ss_pred hc
Q 001652 597 HS 598 (1037)
Q Consensus 597 ~~ 598 (1037)
..
T Consensus 153 ~~ 154 (196)
T PF15272_consen 153 NS 154 (196)
T ss_pred cc
Confidence 33
No 411
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.49 E-value=3.6e+02 Score=29.82 Aligned_cols=6 Identities=33% Similarity=0.374 Sum_probs=2.6
Q ss_pred cCCcch
Q 001652 726 TTPAGE 731 (1037)
Q Consensus 726 ttpag~ 731 (1037)
.||-|.
T Consensus 197 ~t~Dg~ 202 (251)
T PF11932_consen 197 QTLDGS 202 (251)
T ss_pred ECCCcc
Confidence 344444
No 412
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=52.45 E-value=2.8e+02 Score=28.55 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=35.6
Q ss_pred HHHHHhhhcccccCcchhhhhhhHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 451 NFSSRARSTVLSLGNRDTIKKWRDIAND---ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 520 (1037)
Q Consensus 451 rFAsRar~I~~~~~n~~~i~~~~~i~~~---~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk 520 (1037)
+|.+++..+.+++........+..+.+. +...+......|..|+.|+.+....++.....+..+++.++.
T Consensus 1 rl~~~l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~ 73 (160)
T PF13094_consen 1 RLLRRLARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKA 73 (160)
T ss_pred ChHhhCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666553222222222221 222333445566677777777666666655555555544443
No 413
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=52.43 E-value=4.4e+02 Score=30.79 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 477 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVL 513 (1037)
Q Consensus 477 ~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~ 513 (1037)
++..+.+.+-+.....|++++.+|.+.+....++...
T Consensus 119 ~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~ 155 (391)
T KOG1850|consen 119 KDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEE 155 (391)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444455555555555555555444433
No 414
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=52.39 E-value=8.4 Score=40.03 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=18.9
Q ss_pred hHHhhhcCCccceeeeccCCCCccccc
Q 001652 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
.++.++.|+| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3445555877 688899999999884
No 415
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=51.73 E-value=9.9 Score=42.38 Aligned_cols=71 Identities=18% Similarity=0.389 Sum_probs=44.0
Q ss_pred eeecceeeCCCCChhhHHhchHHhHHhhhcCCcc-ceeeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCccccc
Q 001652 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNV-SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATA 265 (1037)
Q Consensus 187 ~F~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~-~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i~~~~~~~~ 265 (1037)
...+|...+-+...+.+.+.+ ..++.|..+ .++-||..|+|||.++- +++... .. .+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlVk------all~~y--------~~---~G- 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLVK------ALLNEY--------AD---QG- 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHHH------HHHHHH--------hh---cC-
Confidence 355666666555555555444 445666654 36669999999998872 222211 11 11
Q ss_pred ccceeEEEEEEechhhhcc
Q 001652 266 RFNFAVTVFELYNEQLREL 284 (1037)
Q Consensus 266 ~~~V~VS~lEIYNE~I~DL 284 (1037)
+.++||..+.+.||
T Consensus 81 -----LRlIev~k~~L~~l 94 (249)
T PF05673_consen 81 -----LRLIEVSKEDLGDL 94 (249)
T ss_pred -----ceEEEECHHHhccH
Confidence 67789988887766
No 416
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=51.62 E-value=12 Score=41.28 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=29.7
Q ss_pred eCCCCChhhHHhchHHhHHhhhcC--CccceeeeccCCCCccccc
Q 001652 194 YGPHVGQAELFSDVQPFVQSALDG--YNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 194 F~~~asQ~eVF~eV~pLV~svLdG--yN~~IfAYGQTGSGKTyTM 236 (1037)
|++-..|+.+-...+.+++.+... .=..++-||+.|.|||..-
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 344456999998888888887643 2345889999999998654
No 417
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=51.51 E-value=10 Score=43.58 Aligned_cols=47 Identities=23% Similarity=0.203 Sum_probs=27.2
Q ss_pred ceeeCCCCChhhHHhc-hHHhHHhhhcCCc-cceeeeccCCCCcccccc
Q 001652 191 DRVYGPHVGQAELFSD-VQPFVQSALDGYN-VSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 191 D~VF~~~asQ~eVF~e-V~pLV~svLdGyN-~~IfAYGQTGSGKTyTM~ 237 (1037)
..=|.|.+--+.++++ |-.++.+.+.+.+ --.+-||+.|+|||.|..
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3333444433444443 3344444444433 347789999999999983
No 418
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=51.26 E-value=4.9e+02 Score=30.93 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhhhhhhhcccC
Q 001652 67 RLKDEIKFVKEDYLELRQEATD----LQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLTA 142 (1037)
Q Consensus 67 ~l~~~l~~~~~~~~~l~~e~~~----~q~~~~~~~~~~~~~l~~L~~~~~~l~~~~~e~e~r~~~~~~eRrkLhN~l~el 142 (1037)
.-+..=..++.+...+..+... .|...+..+ ...+..+.--...|+..+.+....+..+...|.+|-+.|..+
T Consensus 14 ~~r~~s~~lr~es~~l~~et~~~t~~~q~~~~~~L---~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~ 90 (384)
T PF03148_consen 14 AQRNDSERLRQESRRLINETDARTKWDQYDSNKRL---RQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEAL 90 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555433 222222222 222222222233455556666666677788888888888776
Q ss_pred CCCEEE
Q 001652 143 KGNIKV 148 (1037)
Q Consensus 143 kGnIrV 148 (1037)
.+.+.|
T Consensus 91 ~~pl~i 96 (384)
T PF03148_consen 91 RKPLSI 96 (384)
T ss_pred cCcHHH
Confidence 655444
No 419
>PRK04195 replication factor C large subunit; Provisional
Probab=51.21 E-value=9.7 Score=45.98 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=27.0
Q ss_pred hhhHHhchHHhHHhhhcCC-ccceeeeccCCCCccccc
Q 001652 200 QAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 200 Q~eVF~eV~pLV~svLdGy-N~~IfAYGQTGSGKTyTM 236 (1037)
|..+-+.+..++.....|. .-.++-||++|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4444445566666666665 457888999999999987
No 420
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=50.99 E-value=3e+02 Score=28.45 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001652 568 KMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1037)
Q Consensus 568 k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~ 597 (1037)
...+..+++.+...+.++..||.....+..
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666665554433
No 421
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.93 E-value=1.5e+02 Score=38.39 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=12.1
Q ss_pred cceeeeccCCCCccccc
Q 001652 220 VSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1037)
-+++-.|+.++|||.+|
T Consensus 328 ~~~iITGpN~gGKTt~l 344 (782)
T PRK00409 328 TVLVITGPNTGGKTVTL 344 (782)
T ss_pred eEEEEECCCCCCcHHHH
Confidence 34556788888888777
No 422
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=50.92 E-value=80 Score=36.52 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=40.1
Q ss_pred HHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 518 VQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1037)
Q Consensus 518 lqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL 592 (1037)
++.+++...-+...|.++..-+.-.++.++..+.++..+++.-.....+...++....-+|..|+...++|+..|
T Consensus 124 veekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 124 VEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGL 198 (405)
T ss_pred HHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445554443333445555555555556555555555555566666666666666666666544
No 423
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=50.73 E-value=67 Score=43.11 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=22.1
Q ss_pred HHhHHhhhcCCccceeeeccCCCCccccc
Q 001652 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 208 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
..+|..++.|.| +++.-+||||||.+-
T Consensus 466 ~eaI~aiL~GrD--VLVimPTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYD--VFVLMPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCC--EEEEcCCCccHHHHH
Confidence 467888899998 566679999999874
No 424
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=50.69 E-value=8.9 Score=44.65 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=26.7
Q ss_pred CChhhHHhchHHhHHhhhcCCccceeeeccCCCCccccc
Q 001652 198 VGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 198 asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
..|..+|+.|-..+.. .....+|.-|.-|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
Confidence 4688999887433333 34456788999999999987
No 425
>PRK06547 hypothetical protein; Provisional
Probab=50.62 E-value=9.3 Score=39.99 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=19.8
Q ss_pred HhHHhhhcCCccceeeeccCCCCccccc
Q 001652 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 209 pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
.++..+..+.--.|.-+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3445555555556777799999999876
No 426
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=50.53 E-value=5.7 Score=37.92 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.5
Q ss_pred eeeeccCCCCcccccccCCCCCChHHHHHHHHHHhh
Q 001652 222 IFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLS 257 (1037)
Q Consensus 222 IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~i 257 (1037)
|+-||++|.|||+.+ ...+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~----------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----------HHHHHHHHHHh
Confidence 678999999999988 34555555544
No 427
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=50.40 E-value=8 Score=44.10 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=25.6
Q ss_pred ChhhHHhchHHhHHhhhc--CCccceeeeccCCCCcccccc
Q 001652 199 GQAELFSDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 199 sQ~eVF~eV~pLV~svLd--GyN~~IfAYGQTGSGKTyTM~ 237 (1037)
.|+++-+.+..++..... +....++-||++|+|||+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 455555555555554432 222357789999999999984
No 428
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=50.22 E-value=4.4e+02 Score=30.17 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=14.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 628 AVSKKLEEELKKRDALIERLHEENEKL 654 (1037)
Q Consensus 628 ~~~~KLEEel~k~d~~Ie~L~eEneKL 654 (1037)
..-+.|+|...+-.+.-++|..|..-|
T Consensus 162 sk~e~L~ekynkeveerkrle~e~k~l 188 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEVKAL 188 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344455555555555555666665433
No 429
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=50.14 E-value=4.1e+02 Score=30.52 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=20.7
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 469 IKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 504 (1037)
Q Consensus 469 i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L 504 (1037)
+..++....+....+.+.+.||.+|+.++.+.++..
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444445555555566666666666666666654
No 430
>PLN02939 transferase, transferring glycosyl groups
Probab=50.14 E-value=7e+02 Score=33.44 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=16.4
Q ss_pred CCCCCCCcccCCCCeeeeecCCcc
Q 001652 699 DVAPLPLSADKTEGTVALVKSSSE 722 (1037)
Q Consensus 699 ~~~~s~~~~~~~~~~~~~~ks~~~ 722 (1037)
..||.++..-+.+-.+.+|+++.-
T Consensus 505 ~sLPkAL~~~GhdV~VIlP~Y~~i 528 (977)
T PLN02939 505 SGLGKALQKKGHLVEIVLPKYDCM 528 (977)
T ss_pred HHHHHHHHHcCCeEEEEeCCCccc
Confidence 455666666667777888888744
No 431
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=49.90 E-value=6.3 Score=37.33 Aligned_cols=15 Identities=40% Similarity=0.277 Sum_probs=13.3
Q ss_pred eeeeccCCCCccccc
Q 001652 222 IFAYGQTHSGKTHTM 236 (1037)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1037)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 432
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=49.78 E-value=8.6 Score=47.12 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=24.7
Q ss_pred chHHhHHhhhcCCc--cceeeeccCCCCccccc
Q 001652 206 DVQPFVQSALDGYN--VSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 206 eV~pLV~svLdGyN--~~IfAYGQTGSGKTyTM 236 (1037)
+|+..++..+.|.. -.++-+|++|||||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 46777777776654 46788999999999998
No 433
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.46 E-value=7.6e+02 Score=32.63 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=22.6
Q ss_pred ccceeeeccCCCCccccc-------ccCCCCCChHHHHHHHHHH
Q 001652 219 NVSIFAYGQTHSGKTHTM-------EGSSHDRGLYARCFEELFD 255 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM-------~Gs~~~~GIIpRal~~LF~ 255 (1037)
++..+-+|+||||||.-+ ||...-.| ....+++..
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i~ 66 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLIR 66 (908)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHHh
Confidence 455677899999998654 67654434 444455544
No 434
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=49.43 E-value=6.6 Score=43.12 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=20.7
Q ss_pred CccceeeeccCCCCcccccccCCCCCChHHHHHHHHHH
Q 001652 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFD 255 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~ 255 (1037)
.+..++..|..|||||+|| +.|++.-|..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l---------~~ri~~ll~~ 40 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL---------LERIAYLLYE 40 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH---------HHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCchHHH---------HHHHHHhhcc
Confidence 6677888899999999998 4566655543
No 435
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=49.04 E-value=7.2 Score=47.07 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=38.8
Q ss_pred HHhhhcCCccceeeeccCCCCcccccccCC---------C-----CCChHHH---------HHHHHHHhhccCccccccc
Q 001652 211 VQSALDGYNVSIFAYGQTHSGKTHTMEGSS---------H-----DRGLYAR---------CFEELFDLSNSDTTATARF 267 (1037)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~Gs~---------~-----~~GIIpR---------al~~LF~~i~~~~~~~~~~ 267 (1037)
|..+.+|.+. +|++|||||||+...++- . ..|..|+ .+.+||.... ...|
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~-----k~~~ 177 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR-----KFSY 177 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH-----hhcc
Confidence 4455677774 999999999999987631 1 1112232 2566676443 3345
Q ss_pred ceeEEEEEEech
Q 001652 268 NFAVTVFELYNE 279 (1037)
Q Consensus 268 ~V~VS~lEIYNE 279 (1037)
.-.+-.+.+|+.
T Consensus 178 ~s~~~~~~~ygg 189 (482)
T KOG0335|consen 178 LSGMKSVVVYGG 189 (482)
T ss_pred cccceeeeeeCC
Confidence 566667778866
No 436
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=49.02 E-value=1.5e+02 Score=30.47 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 632 KLEEELKKRDALIERLHEENEKLFDR 657 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEneKL~q~ 657 (1037)
.....+..++..|++|+.||+.+++=
T Consensus 72 ~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 72 QARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 44557778888899999999988754
No 437
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=48.99 E-value=6.2e+02 Score=31.46 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 001652 55 EISKQALSTKVQRLKDEIKFVK 76 (1037)
Q Consensus 55 ~~~k~~l~~~v~~l~~~l~~~~ 76 (1037)
.++.++|..-+..|+.++..++
T Consensus 12 ~k~~~Ql~~~~~~lqaev~~lr 33 (531)
T PF15450_consen 12 LKRWKQLEQWVAELQAEVACLR 33 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777776555
No 438
>PRK13764 ATPase; Provisional
Probab=48.85 E-value=7.8 Score=48.28 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.8
Q ss_pred CccceeeeccCCCCcccccc
Q 001652 218 YNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~ 237 (1037)
....|+..|+||||||+++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 34458999999999999984
No 439
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=48.84 E-value=7.1 Score=41.22 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=15.3
Q ss_pred CCccceeeeccCCCCccccc
Q 001652 217 GYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM 236 (1037)
.....||..||.|||||+++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34567999999999999887
No 440
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=48.72 E-value=1.6e+02 Score=26.62 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 544 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1037)
Q Consensus 544 k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe 589 (1037)
...+.+|..|+.+...+......+...+....+.|+.+...+..|+
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3444555555555555554444444444444555555555444443
No 441
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=48.61 E-value=4.9e+02 Score=30.20 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=44.5
Q ss_pred ccCCCcceeEEEeeCCCCCCHHH----HHhHhHHHHHhhhcccccCcchhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001652 423 SLGESSKTLMIVNICPNAANMSE----TLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEIL 498 (1037)
Q Consensus 423 SLGGnSkTlmI~~ISPs~~~~~E----TLsTLrFAsRar~I~~~~~n~~~i~~~~~i~~~~~~el~~l~~eI~~Lk~Ei~ 498 (1037)
.+||..-.+|++- .--...|+. --..+.||..+-.|.-....- +....+....++...+.+....|.+|+.++.
T Consensus 21 LvGGp~Gl~ml~A-gA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~M-s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~ 98 (301)
T PF06120_consen 21 LVGGPPGLVMLGA-GAWYYFYQNAEQARQEAIEFADSLDELKEKLKEM-SSTQLRANIAKAEESIAAQKRAIEDLQKKID 98 (301)
T ss_pred hhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777753 111122222 456788988876654211110 1112333444555566666667777777777
Q ss_pred HHHHHHHHH
Q 001652 499 GLRQALKEA 507 (1037)
Q Consensus 499 ~Lr~~L~~~ 507 (1037)
.|+..+...
T Consensus 99 ~l~~~i~~y 107 (301)
T PF06120_consen 99 SLKDQIKNY 107 (301)
T ss_pred HHHHHHHHH
Confidence 777666533
No 442
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=48.57 E-value=9.4 Score=45.03 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=21.0
Q ss_pred HhHHhhhcCCccceeeeccCCCCccccc
Q 001652 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 209 pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
..+..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 44566778887 888899999999875
No 443
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=48.56 E-value=3.7e+02 Score=28.82 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=34.5
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 531 DLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE-QKMQIQQRDSTIKTLQAKINSIESQRN 593 (1037)
Q Consensus 531 ~L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE-~k~qlqq~e~~Ie~Lq~eieeLe~qL~ 593 (1037)
++..+...++.....+..+..++..+...+.....+ .....+..+++|..|+..+..|+.++.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445554455555555555555555444433 233344556777777777777776663
No 444
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.39 E-value=1.9e+02 Score=26.62 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 538 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 538 ~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
|.....+.+..++..+-+.+..+..+.++++.+.....+..+.|+.+++.|+.+......+
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 445
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.36 E-value=6.4e+02 Score=31.49 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 001652 640 RDALIERLHEENEKLFDRLT 659 (1037)
Q Consensus 640 ~d~~Ie~L~eEneKL~q~l~ 659 (1037)
....++.+.++.+.|++.+.
T Consensus 276 ~~~~~~~i~~~Id~lYd~le 295 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILE 295 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777776663
No 446
>PRK09183 transposase/IS protein; Provisional
Probab=48.27 E-value=9.7 Score=42.35 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=16.1
Q ss_pred cCCccceeeeccCCCCcccccc
Q 001652 216 DGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
.|.| |+-+|++|+||||.+.
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHH
Confidence 4554 5679999999999984
No 447
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=48.23 E-value=10 Score=47.83 Aligned_cols=30 Identities=30% Similarity=0.204 Sum_probs=20.9
Q ss_pred hHHhHHhhhc-----CCccceeeeccCCCCcccccc
Q 001652 207 VQPFVQSALD-----GYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 207 V~pLV~svLd-----GyN~~IfAYGQTGSGKTyTM~ 237 (1037)
|..+++.+.. |.+..++.. .||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHH
Confidence 5566666665 345555444 89999999995
No 448
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.19 E-value=1.4e+02 Score=36.52 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNA--------------KIDRVTRYLGVLADKTRKLDQVALEAE 122 (1037)
Q Consensus 57 ~k~~l~~~v~~l~~~l~~~~~~~~~l~~e~~~~q~~~~~--------------~~~~~~~~l~~L~~~~~~l~~~~~e~e 122 (1037)
..+.|..++..++.++..+..+...+..+..-++..... -+..+...+..+.++..++.....+.+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777666666554333322110 122333333344444444444444444
Q ss_pred HhcCchHHHhhhhhhhcccC
Q 001652 123 ARISPLINEKKRLFNDLLTA 142 (1037)
Q Consensus 123 ~r~~~~~~eRrkLhN~l~el 142 (1037)
.++.++.++..+|-+++..+
T Consensus 152 ~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444433
No 449
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=47.90 E-value=6.9 Score=38.40 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.7
Q ss_pred eeeeccCCCCccccc
Q 001652 222 IFAYGQTHSGKTHTM 236 (1037)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1037)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999987
No 450
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=47.68 E-value=3.5e+02 Score=31.80 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=21.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 473 RDIANDARKELYEREKEIQDLKQEILGLRQALKE 506 (1037)
Q Consensus 473 ~~i~~~~~~el~~l~~eI~~Lk~Ei~~Lr~~L~~ 506 (1037)
+......+.+++...-.++.|.-|...|+.++..
T Consensus 18 k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~ 51 (355)
T PF09766_consen 18 KDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKK 51 (355)
T ss_pred HHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444555666666666666666676666666653
No 451
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=47.57 E-value=11 Score=40.99 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=14.3
Q ss_pred CccceeeeccCCCCccccc
Q 001652 218 YNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM 236 (1037)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5668999999999999886
No 452
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=47.56 E-value=4.7e+02 Score=29.72 Aligned_cols=17 Identities=6% Similarity=0.225 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001652 578 IKTLQAKINSIESQRNE 594 (1037)
Q Consensus 578 Ie~Lq~eieeLe~qL~e 594 (1037)
.+..+.+...|+.++..
T Consensus 279 ~e~~~~~~~~l~~ei~~ 295 (297)
T PF02841_consen 279 KEGFQEEAEKLQKEIQD 295 (297)
T ss_dssp HCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34466666666666654
No 453
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.49 E-value=2.5e+02 Score=34.34 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001652 632 KLEEELKKRDALIERLHEEN 651 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEn 651 (1037)
++++++++++..+++|+...
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444443
No 454
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=47.45 E-value=9.8 Score=44.82 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=20.1
Q ss_pred HhHHhhhcCCccceeeeccCCCCccccc
Q 001652 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 209 pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
..+..++.|.| |++-++||||||.+.
T Consensus 37 ~aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCc--EEEECCCCchHHHHH
Confidence 45566788988 456679999999875
No 455
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=47.37 E-value=1.7e+02 Score=28.06 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=18.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLT 659 (1037)
Q Consensus 626 ~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~ 659 (1037)
.....+.++.++++.+..++.+..+..++..++.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555556666555555543
No 456
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.31 E-value=8.1e+02 Score=32.36 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.3
Q ss_pred Cccccc
Q 001652 231 GKTHTM 236 (1037)
Q Consensus 231 GKTyTM 236 (1037)
|++|.+
T Consensus 82 g~~Y~i 87 (908)
T COG0419 82 GKKYRI 87 (908)
T ss_pred CEEEEE
Confidence 333333
No 457
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.20 E-value=2.2e+02 Score=34.80 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 632 KLEEELKKRDALIERLHEENEKLFDRLT 659 (1037)
Q Consensus 632 KLEEel~k~d~~Ie~L~eEneKL~q~l~ 659 (1037)
.++++..++.+.+.++......|.++|.
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455555555666654
No 458
>PLN03025 replication factor C subunit; Provisional
Probab=47.19 E-value=9.5 Score=43.40 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=25.2
Q ss_pred ecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 189 ~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
+||.|.+ |.++.+.+..++. .|.-..++-||++|+|||++..
T Consensus 11 ~l~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 11 KLDDIVG----NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 3555553 4445444443333 2332336669999999999984
No 459
>PRK00295 hypothetical protein; Provisional
Probab=46.79 E-value=1.3e+02 Score=27.23 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 548 e~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
+.+.+|+.+++......++++..+-+.+..|..|+.++..|..++...
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666667677777777777777777666553
No 460
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.69 E-value=4e+02 Score=32.77 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=22.1
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1037)
Q Consensus 625 ~~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l~~~ 661 (1037)
+++.+..||...++....= -+++.-..+|+..+...
T Consensus 412 ~EE~Lr~Kldtll~~ln~P-nq~k~Rl~~L~e~~r~q 447 (508)
T KOG3091|consen 412 DEEELRAKLDTLLAQLNAP-NQLKARLDELYEILRMQ 447 (508)
T ss_pred cHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHhh
Confidence 5666666666666655544 44666666666666655
No 461
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=46.63 E-value=7.3 Score=40.72 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.9
Q ss_pred cceeeeccCCCCccccc
Q 001652 220 VSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1037)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46889999999999965
No 462
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=46.59 E-value=4e+02 Score=28.59 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhHHHHhhhHHHhHHHHHHHHHHHH--
Q 001652 480 RKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKA---------WKVSFTLQSDLKSENYMLADKHKIEKE-- 548 (1037)
Q Consensus 480 ~~el~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~---------~k~~~elq~~L~~e~~~l~~~~k~~ke-- 548 (1037)
+..+..........-.-+..|..++......|..++..+... .....+-..+|+.-...|.+....-.+
T Consensus 1 rrrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~ 80 (182)
T PF15035_consen 1 RRRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELA 80 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcccccccccCCCCCChh
Q 001652 549 -QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSS 627 (1037)
Q Consensus 549 -~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a 627 (1037)
.|.-|+.++.+.....+.+...+.........++.++..-+.....-...... -.+..+.++-.==-.+.
T Consensus 81 qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~---------y~~~eh~rll~LWr~v~ 151 (182)
T PF15035_consen 81 QVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQ---------YLSSEHSRLLSLWREVV 151 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hhcccccHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 628 AVSKKLEEELKKRDALIERLHEENEKLFDRL 658 (1037)
Q Consensus 628 ~~~~KLEEel~k~d~~Ie~L~eEneKL~q~l 658 (1037)
.+.+.+-|.....+.-+..++.|...+...+
T Consensus 152 ~lRr~f~elr~~TerdL~~~r~e~~r~~r~~ 182 (182)
T PF15035_consen 152 ALRRQFAELRTATERDLSDMRAEFARTSRSV 182 (182)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
No 463
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=46.34 E-value=9.6 Score=48.06 Aligned_cols=34 Identities=35% Similarity=0.393 Sum_probs=25.6
Q ss_pred HHhchHHhHHhhh-cCCccceeeeccCCCCccccc
Q 001652 203 LFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 203 VF~eV~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 236 (1037)
||.-.......++ .+.|-||+-.|.+|||||.|+
T Consensus 68 if~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 68 IFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred cchhhhcccccccccccccceeeccccccccccch
Confidence 5554433333333 689999999999999999997
No 464
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=46.16 E-value=19 Score=46.37 Aligned_cols=37 Identities=35% Similarity=0.362 Sum_probs=27.4
Q ss_pred HhHHhhhcCCccceeeeccCCCCcccccccCCCCCChHHHHHHHHHHh
Q 001652 209 PFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDL 256 (1037)
Q Consensus 209 pLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIpRal~~LF~~ 256 (1037)
..+..+.+|+|+.|.| +||||||-+-| +| ++..|+..
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAAf--------Lp-il~~l~~~ 65 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAAF--------LP-VINELLSL 65 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHHH--------HH-HHHHHHhc
Confidence 3456677999998887 99999998863 33 56666654
No 465
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=46.01 E-value=3.8e+02 Score=28.19 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 001652 489 EIQDLKQEILGLRQAL 504 (1037)
Q Consensus 489 eI~~Lk~Ei~~Lr~~L 504 (1037)
++..|+.++..|..+.
T Consensus 51 e~~~L~~d~e~L~~q~ 66 (158)
T PF09744_consen 51 ELELLREDNEQLETQY 66 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 466
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=45.73 E-value=5.8 Score=44.65 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.7
Q ss_pred hhhhcCCCCCCcccchhhccchhhHH
Q 001652 734 TAALNDFNPEQYDNLAVISDGANKLL 759 (1037)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1037)
.||+.--||.+|| ||+-|||||.=
T Consensus 190 lAai~~Idpt~YE--AA~vDGA~rwq 213 (309)
T COG4209 190 LAAIAGIDPTLYE--AAMVDGASRWQ 213 (309)
T ss_pred HHHHHcCCHHHHH--HHHcccHHHHH
Confidence 5889999999998 89999999963
No 467
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.51 E-value=3.5e+02 Score=31.73 Aligned_cols=14 Identities=36% Similarity=0.216 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhh
Q 001652 647 LHEENEKLFDRLTE 660 (1037)
Q Consensus 647 L~eEneKL~q~l~~ 660 (1037)
.++|+||.+..++-
T Consensus 119 yKdEYEkFKl~~ti 132 (330)
T PF07851_consen 119 YKDEYEKFKLYLTI 132 (330)
T ss_pred hhhhHHHHHHHHHH
Confidence 35667776666643
No 468
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=45.44 E-value=12 Score=44.77 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.1
Q ss_pred HhHHhhhcCCccceeeeccCCCCccccc
Q 001652 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 209 pLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1037)
..+..+++|.| |++..+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45666788988 678889999999885
No 469
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.31 E-value=8.6 Score=45.29 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=15.7
Q ss_pred ccceeeeccCCCCccccc
Q 001652 219 NVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1037)
...|.-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356778999999999998
No 470
>PRK02119 hypothetical protein; Provisional
Probab=45.15 E-value=1.4e+02 Score=27.33 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 547 ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
.+++.+|+.+++......++++..+-.....|..|+.++..|..++..
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666666777777777777666644
No 471
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=44.79 E-value=11 Score=42.02 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=16.6
Q ss_pred cCCccceeeeccCCCCccccc
Q 001652 216 DGYNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM 236 (1037)
.|....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999887
No 472
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.59 E-value=4.8e+02 Score=28.91 Aligned_cols=13 Identities=0% Similarity=0.138 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 001652 580 TLQAKINSIESQR 592 (1037)
Q Consensus 580 ~Lq~eieeLe~qL 592 (1037)
.++.-++.+..+.
T Consensus 150 k~r~vlea~~~E~ 162 (251)
T PF11932_consen 150 KFRRVLEAYQIEM 162 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 473
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=44.58 E-value=2.3e+02 Score=25.31 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 559 QLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1037)
Q Consensus 559 qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe 589 (1037)
.+..+.++.......+..+|+.|+.++++++
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444445556666777777777777765
No 474
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=44.37 E-value=8.8 Score=46.48 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=29.8
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHh-hhc--C--CccceeeeccCCCCccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQS-ALD--G--YNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~s-vLd--G--yN~~IfAYGQTGSGKTyTM 236 (1037)
...+||.|.+.+....++.+-+..+-.. .+. | ..-.|+-||++|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 3577888887655444444322221100 011 2 2235888999999999987
No 475
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.23 E-value=43 Score=38.48 Aligned_cols=19 Identities=42% Similarity=0.499 Sum_probs=16.1
Q ss_pred ccceeeeccCCCCcccccc
Q 001652 219 NVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~ 237 (1037)
.-+|+-+|.||||||++|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3458889999999999984
No 476
>PRK02793 phi X174 lysis protein; Provisional
Probab=44.01 E-value=1.4e+02 Score=27.18 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001652 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1037)
Q Consensus 548 e~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~ 595 (1037)
+++.+|+.+++......++++..+-+.+..|..|+.++..|..++...
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666766666666667677777777777777777777666543
No 477
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=43.39 E-value=9.4 Score=42.11 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.9
Q ss_pred cceeeeccCCCCccccc
Q 001652 220 VSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1037)
..++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45788999999999987
No 478
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=43.22 E-value=9.6 Score=42.97 Aligned_cols=17 Identities=29% Similarity=0.512 Sum_probs=14.3
Q ss_pred cceeeeccCCCCccccc
Q 001652 220 VSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1037)
-.|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 35788999999999765
No 479
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.10 E-value=7.2e+02 Score=30.54 Aligned_cols=13 Identities=38% Similarity=0.404 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhcc
Q 001652 392 LSALGDVLSSLTS 404 (1037)
Q Consensus 392 LsaLg~VI~ALs~ 404 (1037)
=++|..||..|..
T Consensus 312 dmaLNEvL~kLk~ 324 (527)
T PF15066_consen 312 DMALNEVLQKLKH 324 (527)
T ss_pred HHHHHHHHHHHHh
Confidence 3567777777743
No 480
>PRK10869 recombination and repair protein; Provisional
Probab=42.96 E-value=4.6e+02 Score=32.67 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=11.4
Q ss_pred eeeccCCCCccccc
Q 001652 223 FAYGQTHSGKTHTM 236 (1037)
Q Consensus 223 fAYGQTGSGKTyTM 236 (1037)
.-.|.||||||-.|
T Consensus 26 vitGetGaGKS~il 39 (553)
T PRK10869 26 VITGETGAGKSIAI 39 (553)
T ss_pred EEECCCCCChHHHH
Confidence 46799999998655
No 481
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=42.86 E-value=5e+02 Score=28.69 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=23.2
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDR 657 (1037)
Q Consensus 625 ~~a~~~~KLEEel~k~d~~Ie~L~eEneKL~q~ 657 (1037)
....+..+++.+...++..+..|..+.+.+...
T Consensus 158 ~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~ 190 (247)
T PF06705_consen 158 EENRLQEKIEKEKNTRESKLSELRSELEEVKRR 190 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777766653
No 482
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=42.84 E-value=8.1 Score=46.94 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 484 YEREKEIQDLKQEILGLRQALKEANDQC 511 (1037)
Q Consensus 484 ~~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~ 511 (1037)
+.++.||..|++.+......|++.+..+
T Consensus 372 e~YEqEI~~LkErL~~S~rkLeEyErrL 399 (495)
T PF12004_consen 372 EKYEQEIQSLKERLRMSHRKLEEYERRL 399 (495)
T ss_dssp ----------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666555443
No 483
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=42.81 E-value=18 Score=43.47 Aligned_cols=19 Identities=37% Similarity=0.350 Sum_probs=16.5
Q ss_pred CccceeeeccCCCCccccc
Q 001652 218 YNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM 236 (1037)
....|+-+|.+|+|||+|.
T Consensus 94 ~p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3567888999999999998
No 484
>PRK04325 hypothetical protein; Provisional
Probab=42.55 E-value=1.6e+02 Score=26.96 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 548 e~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
+.+.+|+.+++......++++..+-+.+..|..|+.++..|..++..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666666666677777777777777666644
No 485
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.53 E-value=32 Score=40.54 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=26.3
Q ss_pred ecceeeCCCCChhhHHhch-HHhHHh-hhc--CCc--cceeeeccCCCCcccc
Q 001652 189 EFDRVYGPHVGQAELFSDV-QPFVQS-ALD--GYN--VSIFAYGQTHSGKTHT 235 (1037)
Q Consensus 189 ~FD~VF~~~asQ~eVF~eV-~pLV~s-vLd--GyN--~~IfAYGQTGSGKTyT 235 (1037)
+|+.|=+-+..-++|.+.| -||.+- .|. |.. --|+-||+.|+|||-.
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHH
Confidence 4444444444444555544 344432 222 443 3589999999999843
No 486
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=42.51 E-value=8.7e+02 Score=31.33 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHhcCC
Q 001652 776 EILAEIRDAVFAFIRKMEP 794 (1037)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~ 794 (1037)
+.|.=+-++|+||--.++-
T Consensus 401 e~Lk~v~eav~S~q~~L~s 419 (739)
T PF07111_consen 401 EQLKLVSEAVSSSQQWLES 419 (739)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666777777665443
No 487
>PRK00736 hypothetical protein; Provisional
Probab=42.44 E-value=1.6e+02 Score=26.64 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1037)
Q Consensus 549 ~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e 594 (1037)
.+.+|+.+++......++++..+-+....|..|+.++..|..++..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666677777777777777666644
No 488
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.34 E-value=4.7e+02 Score=28.18 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001652 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1037)
Q Consensus 548 e~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~~ 599 (1037)
.+...+..++..+.........++..+...+..++.++.+++.+....+-..
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666655666666666667777777777777776666554443
No 489
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.34 E-value=67 Score=37.89 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001652 574 RDSTIKTLQAKINSIE 589 (1037)
Q Consensus 574 ~e~~Ie~Lq~eieeLe 589 (1037)
.+..+..+...+.+|+
T Consensus 170 ~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 170 LEKRIKKLEDKLDDLE 185 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 490
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.25 E-value=13 Score=47.40 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=26.9
Q ss_pred ecceeeCCCCChhhHHhchHHhHHhhhcCCccceeeeccCCCCcccccc
Q 001652 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1037)
Q Consensus 189 ~FD~VF~~~asQ~eVF~eV~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1037)
+||.+++ |+.+-.....+...+-.|.-..++-||++|+|||++..
T Consensus 26 tldd~vG----Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 26 TLEEFVG----QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cHHHhcC----cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3555543 44444332233333334555578889999999999884
No 491
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.21 E-value=2.6e+02 Score=25.61 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 481 KELYEREKEIQDLKQEILGLRQALK 505 (1037)
Q Consensus 481 ~el~~l~~eI~~Lk~Ei~~Lr~~L~ 505 (1037)
..+.+.+..|..|..|-+.|.....
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el 29 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKEL 29 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888877765543
No 492
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=42.01 E-value=4.6e+02 Score=31.15 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 490 IQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKM 569 (1037)
Q Consensus 490 I~~Lk~Ei~~Lr~~L~~~~~q~~~l~~Elqk~~k~~~elq~~L~~e~~~l~~~~k~~ke~~~eL~~ql~qlle~eeE~k~ 569 (1037)
|..|+.++..++.++.+.......--..+.........++..+..+...+....+..-+........+..-.+..++.-.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 570 QIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 570 qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
.+...+.+...|+.+.+..+........+
T Consensus 336 ~l~~~~~~~~~L~r~~~~~~~~y~~ll~r 364 (444)
T TIGR03017 336 ELNRQRDEMSVLQRDVENAQRAYDAAMQR 364 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=42.00 E-value=4.7e+02 Score=28.06 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001652 485 EREKEIQDLKQEILGLRQALKEANDQC 511 (1037)
Q Consensus 485 ~l~~eI~~Lk~Ei~~Lr~~L~~~~~q~ 511 (1037)
....+|.+|+.|+.+|+..+++....+
T Consensus 67 ~En~qi~~Lq~EN~eL~~~leEhq~al 93 (181)
T PF05769_consen 67 QENRQIRQLQQENRELRQSLEEHQSAL 93 (181)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999998887765544
No 494
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.58 E-value=16 Score=43.58 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=15.7
Q ss_pred cceeeeccCCCCccccc
Q 001652 220 VSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1037)
..|+-.|+||+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 57889999999999998
No 495
>PF14282 FlxA: FlxA-like protein
Probab=41.51 E-value=2.1e+02 Score=27.91 Aligned_cols=53 Identities=32% Similarity=0.389 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001652 544 KIEKEQNAQLRNQVAQLLQ-L---EQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1037)
Q Consensus 544 k~~ke~~~eL~~ql~qlle-~---eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~ 596 (1037)
+.+++++..|..++..+.. . .++...+++.+...|..|+..|..+..+..+..
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555544443 1 122344555666777777777777766655443
No 496
>CHL00176 ftsH cell division protein; Validated
Probab=41.38 E-value=14 Score=46.55 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=28.9
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHHhhhcC---------CccceeeeccCCCCccccc
Q 001652 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDG---------YNVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 186 k~F~FD~VF~~~asQ~eVF~eV~pLV~svLdG---------yN~~IfAYGQTGSGKTyTM 236 (1037)
..++||.|.+.+...++ +..++..+-+. ..-.|+-||++|+|||+..
T Consensus 178 ~~~~f~dv~G~~~~k~~----l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 178 TGITFRDIAGIEEAKEE----FEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCCHHhccChHHHHHH----HHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 45778888775443333 33333322211 1235899999999999987
No 497
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=41.27 E-value=3.4e+02 Score=33.92 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=9.5
Q ss_pred HHHHHhhhcCccc
Q 001652 809 LYIRSLLARSPEL 821 (1037)
Q Consensus 809 ~~~~~~~~~~~~~ 821 (1037)
.|.|-|+...|-+
T Consensus 562 VycRPL~~kdpsm 574 (832)
T KOG2077|consen 562 VYCRPLDKKDPSM 574 (832)
T ss_pred eeecccccCCcce
Confidence 5788888777754
No 498
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.23 E-value=17 Score=43.57 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred hHHhchHHhHHhhhcCC-------ccceeeeccCCCCccccc
Q 001652 202 ELFSDVQPFVQSALDGY-------NVSIFAYGQTHSGKTHTM 236 (1037)
Q Consensus 202 eVF~eV~pLV~svLdGy-------N~~IfAYGQTGSGKTyTM 236 (1037)
.++..+...+...+... ..+|+-.|+||+|||+|+
T Consensus 197 ~~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 197 TAWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTL 238 (424)
T ss_pred HHHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHH
No 499
>PHA00729 NTP-binding motif containing protein
Probab=41.14 E-value=16 Score=40.35 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=0.0
Q ss_pred hHHhHHhhhcCCccceeeeccCCCCccc
Q 001652 207 VQPFVQSALDGYNVSIFAYGQTHSGKTH 234 (1037)
Q Consensus 207 V~pLV~svLdGyN~~IfAYGQTGSGKTy 234 (1037)
+..++..+..|--..|+.+|.+|+||||
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~ 32 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTT 32 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHH
No 500
>PRK04406 hypothetical protein; Provisional
Probab=41.11 E-value=1.4e+02 Score=27.47 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001652 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1037)
Q Consensus 547 ke~~~eL~~ql~qlle~eeE~k~qlqq~e~~Ie~Lq~eieeLe~qL~e~~~~ 598 (1037)
.+....++.++.+|..+..-+...+.+++..+-..+++|..|++++......
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!