BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001653
(1037 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 189 bits (480), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 160/514 (31%), Positives = 233/514 (45%), Gaps = 77/514 (14%)
Query: 482 MPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFA------- 534
+P+ S Q L+ + N F G IP + L L+LS N F G++P F
Sbjct: 263 LPLKSLQYLSLAE---NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 535 ------------------DMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
M+ L+ LD+S N+ +GE+PE + SL L LS+N G
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 577 HIFSE--KFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLP 634
I + L L L N F G+IP +LS C L L+LS N+L G IP LG+L
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 635 TLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIE 694
L+ + + N LEG IP E +L+ L L N + G +PS S +
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT------------ 487
Query: 695 GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE 754
+L + LS N L G IP I RL L L L++N G IP +L +
Sbjct: 488 -----------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 755 VRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP--- 811
+ +DL+ N +G IP + S G++A I +R ++ + +
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQS------GKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 812 -----MGKEETVQFTTKN----MSYYYQGRILT------SMSGIDLSCNKLTGEIPTQIG 856
+ E+ + +T+N S Y G SM +D+S N L+G IP +IG
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 857 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAY 916
+ + LNL HN+++G+IP +L+ + LDLS N L G+IP + L L ++
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 917 NNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSK 950
NNLSG IP+ QF TF + NP LCG PL +
Sbjct: 711 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 175/655 (26%), Positives = 274/655 (41%), Gaps = 42/655 (6%)
Query: 144 TLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVS-QLLQSIASFTSLKHLSMQDCVL 202
+L+LS++ G+V K +L L L + L L S+ S + LK L++ L
Sbjct: 78 SLFLSNSHINGSVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 135
Query: 203 KGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXXXKHTILDQ 262
LK +LE LD+ + + +VG + D
Sbjct: 136 DFPGKVSGGLKLNSLEVLDLSANSI----SGANVVGWVLSDGCGELKHLAISGNKISGDV 191
Query: 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
+ + V+L+ L + N+ G+P+ L + ++LQ L S N+L+G+ S + L+ L
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
I +N G +P L SL+ L ++ N+ T I ++ L LS NHF+
Sbjct: 251 ISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG--- 305
Query: 383 SLEPLFNLSKLQTFNGEI--NAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHD 440
++ P F L N E D+L L + LS G PE L +
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 441 XXXXXXXXXXXXGE--FPXXXXXXXXXXXXXXXXXXSLFGSFRMPIHSHQKLATLDVFNN 498
P G + + +L +L + N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 499 FFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMA 558
+ G IP +G+ L L +L L N G IP +K LE L + N LTGEIP ++
Sbjct: 426 YLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 559 TGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLS 618
C +L ++LSNNRL G I L NL L+L N+F G IP L C L L L+
Sbjct: 485 N-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 619 DNHLFGKIPRWL----GNLPT-----LQYIIMPNNNLEGP-------IPIEFCQRDSLKI 662
N G IP + G + +Y+ + N+ ++ + + + + L
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 663 LDLSN-----NSIFG--TLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYN 715
L N + ++G T P+ + S+ + +S N + G + I P+L L+L +N
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 716 SLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIP 770
+ GSIP+ + L LN L L+ N + G IP + L + IDLS+NNLSG IP
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 117/431 (27%), Positives = 191/431 (44%), Gaps = 57/431 (13%)
Query: 520 LSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATG-CFSLEILALSNNRLQ--G 576
LS + NGS+ S F L LD+S N L+G + + G C L+ L +S+N L G
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 577 HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTL 636
+ S L +L L L N+ G + G LSD L
Sbjct: 140 KV-SGGLKLNSLEVLDLSANSISGA---------NVVGWVLSDG------------CGEL 177
Query: 637 QYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGR 696
+++ + N + G + + C +L+ LD+S+N+ +P ++++ + +S NK+ G
Sbjct: 178 KHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 235
Query: 697 LESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLC-QLKEV 755
I L L++S N G IP L L YL LA N GEIP L +
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 756 RLIDLSHNNLSGRIPPCL-------VNTSLNEGYHGEVAPTSIWCRRASVYR-------S 801
+DLS N+ G +PP + + GE+ ++ R S
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 802 ACLPGQSSPPMGKEETVQFTTKNMSYYYQGRIL--------TSMSGIDLSCNKLTGEIPT 853
LP + T+ ++ N + G IL ++ + L N TG+IP
Sbjct: 354 GELPESLTNLSASLLTLDLSSNN----FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 854 QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 913
+ + + +L+LS N L+GTIP++ +L ++ L L N+L G+IP +L+ + TLE
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 914 VAYNNLSGKIP 924
+ +N+L+G+IP
Sbjct: 470 LDFNDLTGEIP 480
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 157/602 (26%), Positives = 246/602 (40%), Gaps = 94/602 (15%)
Query: 11 QLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXA 70
+L+ L +S N I+G V +SR NL+FL ++ N+F
Sbjct: 176 ELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNF-------------------- 209
Query: 71 DNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDF-RGLRKLNTLYLGGSGIPRIDG 129
S I L S L+ LD++GN + DF R + L L I
Sbjct: 210 ------STGIPFLGDCSALQHLDISGNKLSG-----DFSRAISTCTELKL-----LNISS 253
Query: 130 SKVLQSIGSLP--SLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIA 187
++ + I LP SL+ L L+ KF G ++ +F + L DL + ++
Sbjct: 254 NQFVGPIPPLPLKSLQYLSLAENKFTG-----EIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 188 SFTSLKHLSMQDCV----LKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPX 243
F L + G L LK + L+ LD+ + + F + ES+
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE------FSGELPESLTN 362
Query: 244 XXXXXXXXXXXXKH---TILDQGLCQLVH--LQGLYIRDNDLRDGLPWCLANMTSLQVLY 298
+ IL LCQ LQ LY+++N +P L+N + L L+
Sbjct: 363 LSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 299 ASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS 358
S N L+G I L L LR L + N L G +P L + +L L + +N LT I
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-P 480
Query: 359 SSLMHLTSIEELILSNNHFF-QIPISLEPLFNLSKLQ----TFNGEINAQ---------- 403
S L + T++ + LSNN +IP + L NL+ L+ +F+G I A+
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 540
Query: 404 --TESHYDSLTPK--FQLTSISLSGYVDGGTFPEFLYHQHDXXXXXXXXXXXXGEFPXXX 459
+ ++ P F+ + + ++ G ++Y ++D EF
Sbjct: 541 DLNTNLFNGTIPAAMFKQSGKIAANFIAG---KRYVYIKNDGMKKECHGAGNLLEFQGIR 597
Query: 460 XXXXXXXXXXX--XXXXSLFGSFRMP-IHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLM 516
++G P ++ + LD+ N G+IP EIG+ +P L
Sbjct: 598 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLF 656
Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
LNL N +GSIP D++ L LD+S+N+L G IP+ M+ EI LSNN L G
Sbjct: 657 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI-DLSNNNLSG 715
Query: 577 HI 578
I
Sbjct: 716 PI 717
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 835 TSMSGIDLSCNKLTGEIP--TQIGYLTRIHALNLSHNNLTGTIPTTFSN---LKQIESLD 889
S++ +DLS N L+G + T +G + + LN+S N L P S L +E LD
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 154
Query: 890 LSYNLLHGKIPPQLIV---LNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQ 946
LS N + G ++ L+ ++ N +SG + D ++ E N F G
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGI 213
Query: 947 PLSKSC 952
P C
Sbjct: 214 PFLGDC 219
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 189 bits (480), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 160/514 (31%), Positives = 233/514 (45%), Gaps = 77/514 (14%)
Query: 482 MPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFA------- 534
+P+ S Q L+ + N F G IP + L L+LS N F G++P F
Sbjct: 266 LPLKSLQYLSLAE---NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 535 ------------------DMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
M+ L+ LD+S N+ +GE+PE + SL L LS+N G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 577 HIFSE--KFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLP 634
I + L L L N F G+IP +LS C L L+LS N+L G IP LG+L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 635 TLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIE 694
L+ + + N LEG IP E +L+ L L N + G +PS S +
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT------------ 490
Query: 695 GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE 754
+L + LS N L G IP I RL L L L++N G IP +L +
Sbjct: 491 -----------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 755 VRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP--- 811
+ +DL+ N +G IP + S G++A I +R ++ + +
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQS------GKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 812 -----MGKEETVQFTTKN----MSYYYQGRILT------SMSGIDLSCNKLTGEIPTQIG 856
+ E+ + +T+N S Y G SM +D+S N L+G IP +IG
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 857 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAY 916
+ + LNL HN+++G+IP +L+ + LDLS N L G+IP + L L ++
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 917 NNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSK 950
NNLSG IP+ QF TF + NP LCG PL +
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 175/655 (26%), Positives = 274/655 (41%), Gaps = 42/655 (6%)
Query: 144 TLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVS-QLLQSIASFTSLKHLSMQDCVL 202
+L+LS++ G+V K +L L L + L L S+ S + LK L++ L
Sbjct: 81 SLFLSNSHINGSVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138
Query: 203 KGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXXXKHTILDQ 262
LK +LE LD+ + + +VG + D
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSI----SGANVVGWVLSDGCGELKHLAISGNKISGDV 194
Query: 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
+ + V+L+ L + N+ G+P+ L + ++LQ L S N+L+G+ S + L+ L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
I +N G +P L SL+ L ++ N+ T I ++ L LS NHF+
Sbjct: 254 ISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG--- 308
Query: 383 SLEPLFNLSKLQTFNGEI--NAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHD 440
++ P F L N E D+L L + LS G PE L +
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 441 XXXXXXXXXXXXGE--FPXXXXXXXXXXXXXXXXXXSLFGSFRMPIHSHQKLATLDVFNN 498
P G + + +L +L + N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 499 FFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMA 558
+ G IP +G+ L L +L L N G IP +K LE L + N LTGEIP ++
Sbjct: 429 YLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 559 TGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLS 618
C +L ++LSNNRL G I L NL L+L N+F G IP L C L L L+
Sbjct: 488 N-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 619 DNHLFGKIPRWL----GNLPT-----LQYIIMPNNNLEGP-------IPIEFCQRDSLKI 662
N G IP + G + +Y+ + N+ ++ + + + + L
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 663 LDLSN-----NSIFG--TLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYN 715
L N + ++G T P+ + S+ + +S N + G + I P+L L+L +N
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 716 SLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIP 770
+ GSIP+ + L LN L L+ N + G IP + L + IDLS+NNLSG IP
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 117/431 (27%), Positives = 191/431 (44%), Gaps = 57/431 (13%)
Query: 520 LSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATG-CFSLEILALSNNRLQ--G 576
LS + NGS+ S F L LD+S N L+G + + G C L+ L +S+N L G
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 577 HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTL 636
+ S L +L L L N+ G + G LSD L
Sbjct: 143 KV-SGGLKLNSLEVLDLSANSISGA---------NVVGWVLSDG------------CGEL 180
Query: 637 QYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGR 696
+++ + N + G + + C +L+ LD+S+N+ +P ++++ + +S NK+ G
Sbjct: 181 KHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238
Query: 697 LESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLC-QLKEV 755
I L L++S N G IP L L YL LA N GEIP L +
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 756 RLIDLSHNNLSGRIPPCL-------VNTSLNEGYHGEVAPTSIWCRRASVYR-------S 801
+DLS N+ G +PP + + GE+ ++ R S
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 802 ACLPGQSSPPMGKEETVQFTTKNMSYYYQGRIL--------TSMSGIDLSCNKLTGEIPT 853
LP + T+ ++ N + G IL ++ + L N TG+IP
Sbjct: 357 GELPESLTNLSASLLTLDLSSNN----FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 854 QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 913
+ + + +L+LS N L+GTIP++ +L ++ L L N+L G+IP +L+ + TLE
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 914 VAYNNLSGKIP 924
+ +N+L+G+IP
Sbjct: 473 LDFNDLTGEIP 483
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 157/602 (26%), Positives = 247/602 (41%), Gaps = 94/602 (15%)
Query: 11 QLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXA 70
+L+ L +S N I+G V +SR NL+FL ++ N+F
Sbjct: 179 ELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNF-------------------- 212
Query: 71 DNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDF-RGLRKLNTLYLGGSGIPRIDG 129
S I L S L+ LD++GN + DF R + L L I
Sbjct: 213 ------STGIPFLGDCSALQHLDISGNKLSG-----DFSRAISTCTELKL-----LNISS 256
Query: 130 SKVLQSIGSLP--SLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIA 187
++ + I LP SL+ L L+ KF G ++ +F + L DL + ++
Sbjct: 257 NQFVGPIPPLPLKSLQYLSLAENKFTG-----EIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 188 SFTSLKHLSMQDCV----LKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPX 243
F L + G L LK + L+ LD+ + + F + ES+
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE------FSGELPESLTN 365
Query: 244 XXXXXXXXXXXXKH---TILDQGLCQLVH--LQGLYIRDNDLRDGLPWCLANMTSLQVLY 298
+ IL LCQ LQ LY+++N +P L+N + L L+
Sbjct: 366 LSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 299 ASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS 358
S N L+G I L L LR L + N L G +P L + +L L + +N LT I
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-P 483
Query: 359 SSLMHLTSIEELILSNNHFF-QIPISLEPLFNLSKLQ----TFNGEINAQ---------- 403
S L + T++ + LSNN +IP + L NL+ L+ +F+G I A+
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 404 --TESHYDSLTPK--FQLTSISLSGYVDGGTFPEFLYHQHDXXXXXXXXXXXXGEFPXXX 459
+ ++ P F+ + + ++ G ++Y ++D EF
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAG---KRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 460 XXXXXXXXXXXXXXXS--LFGSFRMP-IHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLM 516
+ ++G P ++ + LD+ N G+IP EIG+ +P L
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLF 659
Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
LNL N +GSIP D++ L LD+S+N+L G IP+ M+ EI LSNN L G
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI-DLSNNNLSG 718
Query: 577 HI 578
I
Sbjct: 719 PI 720
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 835 TSMSGIDLSCNKLTGEIP--TQIGYLTRIHALNLSHNNLTGTIPTTFSN---LKQIESLD 889
S++ +DLS N L+G + T +G + + LN+S N L P S L +E LD
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 157
Query: 890 LSYNLLHGKIPPQLIV---LNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQ 946
LS N + G ++ L+ ++ N +SG + D ++ E N F G
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGI 216
Query: 947 PLSKSC 952
P C
Sbjct: 217 PFLGDC 222
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 29/243 (11%)
Query: 715 NSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIP---- 770
N+L G IP I +L QL+YL + H + G IP L Q+K + +D S+N LSG +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 771 --PCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYY 828
P LV + + P S + + ++ S + S + + F N+++
Sbjct: 147 SLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTI---SRNRLTGKIPPTFANLNLAF- 201
Query: 829 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLT---GTIPTTFSNLKQI 885
+DLS N L G+ G ++L+ N+L G + + K +
Sbjct: 202 -----------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNL 246
Query: 886 ESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCG 945
LDL N ++G +P L L L V++NNL G+IP F+ +Y N LCG
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Query: 946 QPL 948
PL
Sbjct: 307 SPL 309
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 47/287 (16%)
Query: 598 FIGEIPESLSKCYMLRGLYLSDNHLFGK--IPRWLGNLPTLQYIIMPN-NNLEGPIPIEF 654
++G + ++ ++ Y + L LS +L IP L NLP L ++ + NNL GPIP
Sbjct: 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97
Query: 655 CQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSY 714
+ L L +++ ++ G +P S Q+ LVTLD SY
Sbjct: 98 AKLTQLHYLYITHTNVSGAIPDFLS-----QIK------------------TLVTLDFSY 134
Query: 715 NSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV-RLIDLSHNNLSGRIPPCL 773
N+L G++P I LP L + N I G IP ++ + +S N L+G+IPP
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 774 VNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQ--FTTKNMSYYYQG 831
N +L + R+ L G +S G ++ Q KN + G
Sbjct: 195 ANLNL---------------AFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 832 RILTS--MSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIP 876
++ S ++G+DL N++ G +P + L +H+LN+S NNL G IP
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 108/244 (44%), Gaps = 28/244 (11%)
Query: 529 IPSSFADMKMLERLDISN-NQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTN 587
IPSS A++ L L I N L G IP +A LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 588 LMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE 647
L L + N G IP+ LS+ L L S N L G +P + +LP L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 648 GPIPIEFCQRDSL-KILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPH 706
G IP + L + +S N + G +P F+ ++ V LS+N +EG + + +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 707 LVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
+ L+ NSL + ++ LN L L +N I G +P L QLK + +++S NNL
Sbjct: 223 TQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 767 GRIP 770
G IP
Sbjct: 282 GEIP 285
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 34/230 (14%)
Query: 476 LFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFAD 535
L G I +L L + + G IP + + + L+ L+ S NA +G++P S +
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 536 MKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDG 595
+ L + N+++G IP+ + + +S NRL G I NL NL + L
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206
Query: 596 NNFIGEIP------ESLSKCYM-----------------LRGLYLSDNHLFGKIPRWLGN 632
N G+ ++ K ++ L GL L +N ++G +P+ L
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 633 LPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLS----NNSIFGT-LPSC 677
L L + + NNL G IP Q +L+ D+S N + G+ LP+C
Sbjct: 267 LKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 284 LPWCLANMTSLQVLYASS-NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSL 342
+P LAN+ L LY N L G I P + +L L LYI + ++ G++P L+ + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 343 RVLDVSYNQLTENI--SSSSLMHLTSI 367
LD SYN L+ + S SSL +L I
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGI 154
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
+ +L L LYI ++ +P L+ + +L L S N L+G + P + L L +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 323 IDNNDLRGSLPLCLANLTSL-RVLDVSYNQLTENI 356
D N + G++P + + L + +S N+LT I
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 100/267 (37%), Gaps = 26/267 (9%)
Query: 89 LEELDMTG-NAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYL 147
+ LD++G N + +P L LN LY+GG I + G + +I L L LY+
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--INNLVG-PIPPAIAKLTQLHYLYI 108
Query: 148 SHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALH 207
+HT G + + L L L + L L SI+S +L ++ + GA+
Sbjct: 109 THTNVSGAIPD-FLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 208 GQDFLKFKNL-----------------EYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXX 250
+ F L + ++ VD++ N L+ +
Sbjct: 167 -DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 251 XXXXXKHTILDQGLCQLV-HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNIS 309
D G L +L GL +R+N + LP L + L L S N L G I
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 310 PGLCELVLLRKLYIDNNDLRGS-LPLC 335
G Y +N L GS LP C
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLPAC 312
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 2/147 (1%)
Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN 325
+L L+ LY+ DN L+ + +L+ L+ + N+L +LV L +L +D
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 326 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI-SL 384
N L+ P +LT L L + YN+L +++ LTS++EL L NN ++P +
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 385 EPLFNLSKLQTFNGEINAQTESHYDSL 411
+ L L L+ N ++ E +DSL
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSL 204
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 488 QKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNN 547
+ L TL V +N Q +P+ + L L EL L RN P F + L L + N
Sbjct: 85 KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 548 QLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE--- 604
+L +P+ + SL+ L L NN+L+ LT L TL+LD NN + +PE
Sbjct: 144 ELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD-NNQLKRVPEGAF 201
Query: 605 -SLSKCYMLR 613
SL K ML+
Sbjct: 202 DSLEKLKMLQ 211
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 80/190 (42%), Gaps = 14/190 (7%)
Query: 36 RLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXADNRLNGSIDIKGLNSLSNLEELDMT 95
RLT L+ LYLNDN DN+L ++ I + L NL EL +
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117
Query: 96 GNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGT 155
N +++L P+ F L KL L LG + + + L SLK L L + + K
Sbjct: 118 RNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKG----VFDKLTSLKELRLYNNQLK-R 171
Query: 156 VVNQKLHNFTNLEELILDESDL-HVSQLLQSIASFTSLKHLSMQ----DCVLKGALHGQD 210
V T L+ L LD + L V + + S LK L +Q DC G ++
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQENPWDCTCNGIIYMAK 229
Query: 211 FLKFKNLEYL 220
+LK K E L
Sbjct: 230 WLKKKADEGL 239
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 4/188 (2%)
Query: 517 ELNLSRNAFNGSIPS-SFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ 575
+L+L N + S+PS +F + L L +++N+L +P + +LE L +++N+LQ
Sbjct: 41 KLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 576 GHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPT 635
L NL L+LD N P L L L N L L +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 636 LQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCF-SPASIEQVHLSKNKIE 694
L+ + + NN L+ F + LK L L NN + F S ++ + L +N +
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Query: 695 GRLESIIH 702
II+
Sbjct: 219 CTCNGIIY 226
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 26/181 (14%)
Query: 591 LQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPI 650
L L N ++ + LR LYL+DN L L L+ + + +N L+ +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-L 100
Query: 651 PIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTL 710
PI +F L ++ ++ L +N+++ + L L
Sbjct: 101 PI----------------GVFDQL------VNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
Query: 711 DLSYNSLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRI 769
L YN L S+P + D+L L L L +N +K +L E++ + L +N L R+
Sbjct: 139 SLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RV 196
Query: 770 P 770
P
Sbjct: 197 P 197
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 30/139 (21%)
Query: 301 SNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSS 360
SN+L+ S L LR LY+++N L+ +LP +
Sbjct: 46 SNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP------------------------AGI 80
Query: 361 LMHLTSIEELILSNNHFFQIPISL-EPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTS 419
L ++E L +++N +PI + + L NL++L+ ++ + +DSLT +LT
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT---KLTY 137
Query: 420 ISLSGYVDGGTFPEFLYHQ 438
+SL GY + + P+ ++ +
Sbjct: 138 LSL-GYNELQSLPKGVFDK 155
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 13/136 (9%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L +L GL + +N + D P L N+T+L L SSN ++ +IS L L L++L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSF 158
Query: 324 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI-PI 382
+N + PL ANLT+L LD+S N++++ S L LT++E LI +NN I P+
Sbjct: 159 SSNQVTDLKPL--ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPL 213
Query: 383 SLEPLFNLSKLQTFNG 398
+ L NL +L + NG
Sbjct: 214 GI--LTNLDEL-SLNG 226
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 134/316 (42%), Gaps = 60/316 (18%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
DI L +L+NL L+++ N I ++ GL L L + + L+ + +
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFSSNQVTD------LKPLAN 171
Query: 139 LPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQ 198
L +L+ L +S K V L TNLE LI ++ +S + + T+L LS+
Sbjct: 172 LTTLERLDISSNKVSDISV---LAKLTNLESLI--ATNNQISDI-TPLGILTNLDELSLN 225
Query: 199 DCVLK--GALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXXXK 256
LK G L NL LD+ Q+ +N + G K
Sbjct: 226 GNQLKDIGTLAS-----LTNLTDLDLANNQI---SNLAPLSG---------------LTK 262
Query: 257 HTILDQG---------LCQLVHLQGLYIRDNDLRDGLPWC-LANMTSLQVLYASSNQLTG 306
T L G L L L L + +N L D P L N+T L + + +
Sbjct: 263 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN----IS 318
Query: 307 NISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTS 366
+ISP + L L++L+ NN + S LANLT++ L +NQ+++ + L +LT
Sbjct: 319 DISP-VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISD---LTPLANLTR 372
Query: 367 IEELILSNNHFFQIPI 382
I +L L++ + P+
Sbjct: 373 ITQLGLNDQAWTNAPV 388
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 40/237 (16%)
Query: 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXAD 71
LE LD+S N ++ + L++LTNL+ L +N ++ +
Sbjct: 175 LERLDISSNKVS------DISVLAKLTNLESLIATNNQISD-------ITPLGILTNLDE 221
Query: 72 NRLNGS--IDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
LNG+ DI L SL+NL +LD+ N I NL GL KL L LG + I I
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI-- 276
Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH-VSQLLQ---- 184
+ L +L L L+ + + L N T L + SD+ VS L +
Sbjct: 277 ----SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Query: 185 -----SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYL------DMGWVQVDVN 230
++ +SL +L+ + + G D NL + D W VN
Sbjct: 333 FFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN 389
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 22/152 (14%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L L+ L I N + D LA +T+L+ L A++NQ++ +I+P L L L +L +
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSL 224
Query: 324 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
+ N L+ G+L A+LT+L LD++ NQ++ + + L LT + EL L N I
Sbjct: 225 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNI- 276
Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTP 413
PL L+ L N E+N E+ + ++P
Sbjct: 277 ---SPLAGLTALT--NLELN---ENQLEDISP 300
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
L L +L+ S N P A++ LERLDIS+N+++ + +LE L +N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATN 204
Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNF--IGEIPESLSKCYMLRGLYLSDNHLFGKIP 627
N++ + LTNL L L+GN IG +L+ L L L++N + P
Sbjct: 205 NQISD--ITPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 13/136 (9%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L +L GL + +N + D P L N+T+L L SSN ++ +IS L L L++L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSF 158
Query: 324 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI-PI 382
+N + PL ANLT+L LD+S N++++ S L LT++E LI +NN I P+
Sbjct: 159 SSNQVTDLKPL--ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPL 213
Query: 383 SLEPLFNLSKLQTFNG 398
+ L NL +L + NG
Sbjct: 214 GI--LTNLDEL-SLNG 226
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 134/316 (42%), Gaps = 60/316 (18%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
DI L +L+NL L+++ N I ++ GL L L + + L+ + +
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFSSNQVTD------LKPLAN 171
Query: 139 LPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQ 198
L +L+ L +S K V L TNLE LI ++ +S + + T+L LS+
Sbjct: 172 LTTLERLDISSNKVSDISV---LAKLTNLESLI--ATNNQISDI-TPLGILTNLDELSLN 225
Query: 199 DCVLK--GALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXXXK 256
LK G L NL LD+ Q+ +N + G K
Sbjct: 226 GNQLKDIGTLAS-----LTNLTDLDLANNQI---SNLAPLSG---------------LTK 262
Query: 257 HTILDQG---------LCQLVHLQGLYIRDNDLRDGLPWC-LANMTSLQVLYASSNQLTG 306
T L G L L L L + +N L D P L N+T L + + +
Sbjct: 263 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN----IS 318
Query: 307 NISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTS 366
+ISP + L L++L+ NN + S LANLT++ L +NQ+++ + L +LT
Sbjct: 319 DISP-VSSLTKLQRLFFSNN--KVSDVSSLANLTNINWLSAGHNQISD---LTPLANLTR 372
Query: 367 IEELILSNNHFFQIPI 382
I +L L++ + P+
Sbjct: 373 ITQLGLNDQAWTNAPV 388
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 40/237 (16%)
Query: 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXAD 71
LE LD+S N ++ + L++LTNL+ L +N ++ +
Sbjct: 175 LERLDISSNKVS------DISVLAKLTNLESLIATNNQISD-------ITPLGILTNLDE 221
Query: 72 NRLNGS--IDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
LNG+ DI L SL+NL +LD+ N I NL GL KL L LG + I I
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI-- 276
Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH-VSQLLQ---- 184
+ L +L L L+ + + L N T L + SD+ VS L +
Sbjct: 277 ----SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Query: 185 -----SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYL------DMGWVQVDVN 230
++ +SL +L+ + + G D NL + D W VN
Sbjct: 333 FFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN 389
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 22/152 (14%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L L+ L I N + D LA +T+L+ L A++NQ++ +I+P L L L +L +
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSL 224
Query: 324 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
+ N L+ G+L A+LT+L LD++ NQ++ + + L LT + EL L N I
Sbjct: 225 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNI- 276
Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTP 413
PL L+ L N E+N E+ + ++P
Sbjct: 277 ---SPLAGLTALT--NLELN---ENQLEDISP 300
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
L L +L+ S N P A++ LERLDIS+N+++ + +LE L +N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATN 204
Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNF--IGEIPESLSKCYMLRGLYLSDNHLFGKIP 627
N++ + LTNL L L+GN IG +L+ L L L++N + P
Sbjct: 205 NQISD--ITPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 13/136 (9%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L +L GL + +N + D P L N+T+L L SSN ++ +IS L L L++L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNF 158
Query: 324 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI-PI 382
+N + PL ANLT+L LD+S N++++ S L LT++E LI +NN I P+
Sbjct: 159 SSNQVTDLKPL--ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPL 213
Query: 383 SLEPLFNLSKLQTFNG 398
+ L NL +L + NG
Sbjct: 214 GI--LTNLDEL-SLNG 226
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 134/316 (42%), Gaps = 60/316 (18%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
DI L +L+NL L+++ N I ++ GL L L + + L+ + +
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLNFSSNQVTD------LKPLAN 171
Query: 139 LPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQ 198
L +L+ L +S K V L TNLE LI ++ +S + + T+L LS+
Sbjct: 172 LTTLERLDISSNKVSDISV---LAKLTNLESLI--ATNNQISDI-TPLGILTNLDELSLN 225
Query: 199 DCVLK--GALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXXXK 256
LK G L NL LD+ Q+ +N + G K
Sbjct: 226 GNQLKDIGTLAS-----LTNLTDLDLANNQI---SNLAPLSG---------------LTK 262
Query: 257 HTILDQG---------LCQLVHLQGLYIRDNDLRDGLPWC-LANMTSLQVLYASSNQLTG 306
T L G L L L L + +N L D P L N+T L + + +
Sbjct: 263 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN----IS 318
Query: 307 NISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTS 366
+ISP + L L++L+ NN + S LANLT++ L +NQ+++ + L +LT
Sbjct: 319 DISP-VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISD---LTPLANLTR 372
Query: 367 IEELILSNNHFFQIPI 382
I +L L++ + P+
Sbjct: 373 ITQLGLNDQAWTNAPV 388
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 40/237 (16%)
Query: 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXAD 71
LE LD+S N ++ + L++LTNL+ L +N ++ +
Sbjct: 175 LERLDISSNKVS------DISVLAKLTNLESLIATNNQISD-------ITPLGILTNLDE 221
Query: 72 NRLNGS--IDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
LNG+ DI L SL+NL +LD+ N I NL GL KL L LG + I I
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI-- 276
Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH-VSQLLQ---- 184
+ L +L L L+ + + L N T L + SD+ VS L +
Sbjct: 277 ----SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Query: 185 -----SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYL------DMGWVQVDVN 230
++ +SL +L+ + + G D NL + D W VN
Sbjct: 333 FFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN 389
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 22/152 (14%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L L+ L I N + D LA +T+L+ L A++NQ++ +I+P L L L +L +
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSL 224
Query: 324 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
+ N L+ G+L A+LT+L LD++ NQ++ + + L LT + EL L N I
Sbjct: 225 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNI- 276
Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTP 413
PL L+ L N E+N E+ + ++P
Sbjct: 277 ---SPLAGLTALT--NLELN---ENQLEDISP 300
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
L L +LN S N P A++ LERLDIS+N+++ + +LE L +N
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATN 204
Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNF--IGEIPESLSKCYMLRGLYLSDNHLFGKIP 627
N++ + LTNL L L+GN IG +L+ L L L++N + P
Sbjct: 205 NQISD--ITPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP 256
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
L L L L NA +F D+ L L + N+++ +PER G SL+ L L
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 185
Query: 572 NRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
NR+ H+ F +L LMTL L NN E+L+ L+ L L+DN
Sbjct: 186 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 38.1 bits (87), Expect = 0.029, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 78 IDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIG 137
ID L+ LE+LD++ NA V P F GL +L+TL+L G+ + G + +
Sbjct: 70 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFR--- 125
Query: 138 SLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELIL 172
L +L+ LYL + + + + NL L L
Sbjct: 126 GLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFL 159
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 28/192 (14%)
Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNN-QLTGEIP------- 554
H+P L L L N ++F + +LE+LD+S+N QL P
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 555 ------------ERMATGCF----SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNF 598
+ + G F +L+ L L +N LQ +L NL L L GN
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR- 163
Query: 599 IGEIPE-SLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIE-FCQ 656
I +PE + + L L L N + P +L L + + NNL +P E
Sbjct: 164 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAP 222
Query: 657 RDSLKILDLSNN 668
+L+ L L++N
Sbjct: 223 LRALQYLRLNDN 234
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 94 MTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFK 153
+ GN I + V FR R L L+L + + RID + + L L+ L LS
Sbjct: 38 LHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQL 92
Query: 154 GTVVNQKLHNFTNLEELILDESDLHV--SQLLQSIASFTSLKHLSMQDCVLKGALHGQDF 211
+V H L L LD L L + +A +L++L +QD L+ AL F
Sbjct: 93 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA---ALQYLYLQDNALQ-ALPDDTF 148
Query: 212 LKFKNLEYL 220
NL +L
Sbjct: 149 RDLGNLTHL 157
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 5/203 (2%)
Query: 540 ERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFN-LTNLMTLQLDGNNF 598
+R+ + N+++ +P C +L IL L +N L I + F L L L L N
Sbjct: 34 QRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ 91
Query: 599 IGEI-PESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR 657
+ + P + L L+L L P L LQY+ + +N L+ F
Sbjct: 92 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 151
Query: 658 DSLKILDLSNNSIFGTLPSCFSPA-SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS 716
+L L L N I F S++++ L +N++ D L+TL L N+
Sbjct: 152 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 211
Query: 717 LHGSIPNRIDRLPQLNYLLLAHN 739
L + L L YL L N
Sbjct: 212 LSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
L L L L NA +F D+ L L + N+++ +PER G SL+ L L
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186
Query: 572 NRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
NR+ H+ F +L LMTL L NN E+L+ L+ L L+DN
Sbjct: 187 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 78 IDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIG 137
ID L+ LE+LD++ NA V P F GL +L+TL+L G+ + G + +
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFR--- 126
Query: 138 SLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELIL 172
L +L+ LYL + + + + NL L L
Sbjct: 127 GLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFL 160
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 28/192 (14%)
Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNN-QLTGEIP------- 554
H+P L L L N ++F + +LE+LD+S+N QL P
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 555 ------------ERMATGCF----SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNF 598
+ + G F +L+ L L +N LQ +L NL L L GN
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR- 164
Query: 599 IGEIPE-SLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIE-FCQ 656
I +PE + + L L L N + P +L L + + NNL +P E
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAP 223
Query: 657 RDSLKILDLSNN 668
+L+ L L++N
Sbjct: 224 LRALQYLRLNDN 235
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 94 MTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFK 153
+ GN I + V FR R L L+L + + RID + + L L+ L LS
Sbjct: 39 LHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQL 93
Query: 154 GTVVNQKLHNFTNLEELILDESDLHV--SQLLQSIASFTSLKHLSMQDCVLKGALHGQDF 211
+V H L L LD L L + +A +L++L +QD L+ AL F
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA---ALQYLYLQDNALQ-ALPDDTF 149
Query: 212 LKFKNLEYL 220
NL +L
Sbjct: 150 RDLGNLTHL 158
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 5/203 (2%)
Query: 540 ERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFN-LTNLMTLQLDGNNF 598
+R+ + N+++ +P C +L IL L +N L I + F L L L L N
Sbjct: 35 QRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 599 IGEI-PESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR 657
+ + P + L L+L L P L LQY+ + +N L+ F
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 658 DSLKILDLSNNSIFGTLPSCFSPA-SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS 716
+L L L N I F S++++ L +N++ D L+TL L N+
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 717 LHGSIPNRIDRLPQLNYLLLAHN 739
L + L L YL L N
Sbjct: 213 LSALPTEALAPLRALQYLRLNDN 235
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 18/138 (13%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L +L GL + +N + D P L N+T+L L SSN ++ +IS L L L++L
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSF 162
Query: 324 DN--NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI- 380
N DL+ LANLT+L LD+S N++++ S L LT++E LI +NN I
Sbjct: 163 GNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDIT 214
Query: 381 PISLEPLFNLSKLQTFNG 398
P+ + L NL +L + NG
Sbjct: 215 PLGI--LTNLDEL-SLNG 229
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 135/315 (42%), Gaps = 59/315 (18%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
DI L +L+NL L+++ N I ++ GL L L G L+ + +
Sbjct: 125 DIDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTD-------LKPLAN 174
Query: 139 LPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQ 198
L +L+ L +S K V L TNLE LI ++ +S + + T+L LS+
Sbjct: 175 LTTLERLDISSNKVSDISV---LAKLTNLESLI--ATNNQISDI-TPLGILTNLDELSLN 228
Query: 199 DCVLK--GALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXXXK 256
LK G L NL LD+ Q+ +N + G K
Sbjct: 229 GNQLKDIGTLAS-----LTNLTDLDLANNQI---SNLAPLSG---------------LTK 265
Query: 257 HTILDQG---------LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGN 307
T L G L L L L + +N L D P ++N+ +L L N ++ +
Sbjct: 266 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-D 322
Query: 308 ISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSI 367
ISP + L L++L+ NN + S LANLT++ L +NQ+++ + L +LT I
Sbjct: 323 ISP-VSSLTKLQRLFFANN--KVSDVSSLANLTNINWLSAGHNQISD---LTPLANLTRI 376
Query: 368 EELILSNNHFFQIPI 382
+L L++ + P+
Sbjct: 377 TQLGLNDQAWTNAPV 391
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 40/237 (16%)
Query: 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXAD 71
LE LD+S N ++ + L++LTNL+ L +N ++ +
Sbjct: 178 LERLDISSNKVS------DISVLAKLTNLESLIATNNQISD-------ITPLGILTNLDE 224
Query: 72 NRLNGS--IDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
LNG+ DI L SL+NL +LD+ N I NL GL KL L LG + I I
Sbjct: 225 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI-- 279
Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH-VSQLLQ---- 184
+ L +L L L+ + + L N T L + SD+ VS L +
Sbjct: 280 ----SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 335
Query: 185 -----SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYL------DMGWVQVDVN 230
++ +SL +L+ + + G D NL + D W VN
Sbjct: 336 FFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN 392
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 22/152 (14%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L L+ L I N + D LA +T+L+ L A++NQ++ +I+P L L L +L +
Sbjct: 172 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSL 227
Query: 324 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
+ N L+ G+L A+LT+L LD++ NQ++ + + L LT + EL L N I
Sbjct: 228 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNI- 279
Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTP 413
PL L+ L N E+N E+ + ++P
Sbjct: 280 ---SPLAGLTALT--NLELN---ENQLEDISP 303
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 18/138 (13%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L +L GL + +N + D P L N+T+L L SSN ++ +IS L L L++L
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSF 163
Query: 324 DN--NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI- 380
N DL+ LANLT+L LD+S N++++ S L LT++E LI +NN I
Sbjct: 164 GNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDIT 215
Query: 381 PISLEPLFNLSKLQTFNG 398
P+ + L NL +L + NG
Sbjct: 216 PLGI--LTNLDEL-SLNG 230
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 135/315 (42%), Gaps = 59/315 (18%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
DI L +L+NL L+++ N I ++ GL L L G L+ + +
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTD-------LKPLAN 175
Query: 139 LPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQ 198
L +L+ L +S K V L TNLE LI ++ +S + + T+L LS+
Sbjct: 176 LTTLERLDISSNKVSDISV---LAKLTNLESLI--ATNNQISDI-TPLGILTNLDELSLN 229
Query: 199 DCVLK--GALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXXXK 256
LK G L NL LD+ Q+ +N + G K
Sbjct: 230 GNQLKDIGTLAS-----LTNLTDLDLANNQI---SNLAPLSG---------------LTK 266
Query: 257 HTILDQG---------LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGN 307
T L G L L L L + +N L D P ++N+ +L L N ++ +
Sbjct: 267 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-D 323
Query: 308 ISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSI 367
ISP + L L++L+ NN + S LANLT++ L +NQ+++ + L +LT I
Sbjct: 324 ISP-VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISD---LTPLANLTRI 377
Query: 368 EELILSNNHFFQIPI 382
+L L++ + P+
Sbjct: 378 TQLGLNDQAWTNAPV 392
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 40/237 (16%)
Query: 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXAD 71
LE LD+S N ++ + L++LTNL+ L +N ++ +
Sbjct: 179 LERLDISSNKVS------DISVLAKLTNLESLIATNNQISD-------ITPLGILTNLDE 225
Query: 72 NRLNGS--IDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
LNG+ DI L SL+NL +LD+ N I NL GL KL L LG + I I
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI-- 280
Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH-VSQLLQ---- 184
+ L +L L L+ + + L N T L + SD+ VS L +
Sbjct: 281 ----SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
Query: 185 -----SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYL------DMGWVQVDVN 230
++ +SL +L+ + + G D NL + D W VN
Sbjct: 337 FFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN 393
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 22/152 (14%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L L+ L I N + D LA +T+L+ L A++NQ++ +I+P L L L +L +
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSL 228
Query: 324 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
+ N L+ G+L A+LT+L LD++ NQ++ + + L LT + EL L N I
Sbjct: 229 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNI- 280
Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTP 413
PL L+ L N E+N E+ + ++P
Sbjct: 281 ---SPLAGLTALT--NLELN---ENQLEDISP 304
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 18/138 (13%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L +L GL + +N + D P L N+T+L L SSN ++ +IS L L L++L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNF 158
Query: 324 DN--NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI- 380
N DL+ LANLT+L LD+S N++++ S L LT++E LI +NN I
Sbjct: 159 GNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDIT 210
Query: 381 PISLEPLFNLSKLQTFNG 398
P+ + L NL +L + NG
Sbjct: 211 PLGI--LTNLDEL-SLNG 225
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 137/318 (43%), Gaps = 65/318 (20%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKV--LQSI 136
DI L +L+NL L+++ N I ++ L++LN G++V L+ +
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF------------GNQVTDLKPL 168
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLS 196
+L +L+ L +S K V L TNLE LI ++ +S + + T+L LS
Sbjct: 169 ANLTTLERLDISSNKVSDISV---LAKLTNLESLI--ATNNQISDI-TPLGILTNLDELS 222
Query: 197 MQDCVLK--GALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXX 254
+ LK G L NL LD+ Q+ +N + G
Sbjct: 223 LNGNQLKDIGTLAS-----LTNLTDLDLANNQI---SNLAPLSG---------------L 259
Query: 255 XKHTILDQG---------LCQLVHLQGLYIRDNDLRDGLPWC-LANMTSLQVLYASSNQL 304
K T L G L L L L + +N L D P L N+T L + + +
Sbjct: 260 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN---- 315
Query: 305 TGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHL 364
+ISP + L L++L+ NN + S LANLT++ L +NQ+++ + L +L
Sbjct: 316 ISDISP-VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISD---LTPLANL 369
Query: 365 TSIEELILSNNHFFQIPI 382
T I +L L++ + P+
Sbjct: 370 TRITQLGLNDQAWTNAPV 387
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 40/237 (16%)
Query: 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXAD 71
LE LD+S N ++ + L++LTNL+ L +N ++ +
Sbjct: 174 LERLDISSNKVS------DISVLAKLTNLESLIATNNQISD-------ITPLGILTNLDE 220
Query: 72 NRLNGS--IDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
LNG+ DI L SL+NL +LD+ N I NL GL KL L LG + I I
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI-- 275
Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH-VSQLLQ---- 184
+ L +L L L+ + + L N T L + SD+ VS L +
Sbjct: 276 ----SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
Query: 185 -----SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYL------DMGWVQVDVN 230
++ +SL +L+ + + G D NL + D W VN
Sbjct: 332 FFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN 388
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 22/152 (14%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L L+ L I N + D LA +T+L+ L A++NQ++ +I+P L L L +L +
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSL 223
Query: 324 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
+ N L+ G+L A+LT+L LD++ NQ++ + + L LT + EL L N I
Sbjct: 224 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNI- 275
Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTP 413
PL L+ L N E+N E+ + ++P
Sbjct: 276 ---SPLAGLTALT--NLELN---ENQLEDISP 299
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 18/138 (13%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L +L GL + +N + D P L N+T+L L SSN ++ +IS L L L++L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNF 158
Query: 324 DN--NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI- 380
N DL+ LANLT+L LD+S N++++ S L LT++E LI +NN I
Sbjct: 159 GNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDIT 210
Query: 381 PISLEPLFNLSKLQTFNG 398
P+ + L NL +L + NG
Sbjct: 211 PLGI--LTNLDEL-SLNG 225
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 137/318 (43%), Gaps = 65/318 (20%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKV--LQSI 136
DI L +L+NL L+++ N I ++ L++LN G++V L+ +
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF------------GNQVTDLKPL 168
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLS 196
+L +L+ L +S K V L TNLE LI ++ +S + + T+L LS
Sbjct: 169 ANLTTLERLDISSNKVSDISV---LAKLTNLESLI--ATNNQISDI-TPLGILTNLDELS 222
Query: 197 MQDCVLK--GALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXX 254
+ LK G L NL LD+ Q+ +N + G
Sbjct: 223 LNGNQLKDIGTLAS-----LTNLTDLDLANNQI---SNLAPLSG---------------L 259
Query: 255 XKHTILDQG---------LCQLVHLQGLYIRDNDLRDGLPWC-LANMTSLQVLYASSNQL 304
K T L G L L L L + +N L D P L N+T L + + +
Sbjct: 260 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN---- 315
Query: 305 TGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHL 364
+ISP + L L++L+ NN + S LANLT++ L +NQ+++ + L +L
Sbjct: 316 ISDISP-VSSLTKLQRLFFSNN--KVSDVSSLANLTNINWLSAGHNQISD---LTPLANL 369
Query: 365 TSIEELILSNNHFFQIPI 382
T I +L L++ + P+
Sbjct: 370 TRITQLGLNDQAWTNAPV 387
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 40/237 (16%)
Query: 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXAD 71
LE LD+S N ++ + L++LTNL+ L +N ++ +
Sbjct: 174 LERLDISSNKVS------DISVLAKLTNLESLIATNNQISD-------ITPLGILTNLDE 220
Query: 72 NRLNGS--IDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
LNG+ DI L SL+NL +LD+ N I NL GL KL L LG + I I
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI-- 275
Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH-VSQLLQ---- 184
+ L +L L L+ + + L N T L + SD+ VS L +
Sbjct: 276 ----SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
Query: 185 -----SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYL------DMGWVQVDVN 230
++ +SL +L+ + + G D NL + D W VN
Sbjct: 332 FFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN 388
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 22/152 (14%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
L L L+ L I N + D LA +T+L+ L A++NQ++ +I+P L L L +L +
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSL 223
Query: 324 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
+ N L+ G+L A+LT+L LD++ NQ++ + + L LT + EL L N I
Sbjct: 224 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNI- 275
Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTP 413
PL L+ L N E+N E+ + ++P
Sbjct: 276 ---SPLAGLTALT--NLELN---ENQLEDISP 299
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 106/282 (37%), Gaps = 53/282 (18%)
Query: 652 IEFCQRDSLKILDLSNNSIFGTLPSCF----------------------------SPASI 683
+EF SL+ LDLS+N + P CF S SI
Sbjct: 165 LEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSI 224
Query: 684 EQVHLSKNKIEGRLESIIH--DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI 741
+ + L+ N++ ES +L LDLSYN+LH LP L YL L +N I
Sbjct: 225 QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Query: 742 KGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSI-WCRRASVYR 800
+ P L +R + L S++ H + S W + Y
Sbjct: 285 QRLSPRSFYGLSNLRYLSLKR---------AFTKQSVSLASHPNIDDFSFQWLK----YL 331
Query: 801 SACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTR 860
++ P K T T +S Y S+S S LT E + + +
Sbjct: 332 EYLNMDDNNIPSTKSNTF---TGLVSLKY-----LSLSKTFTSLQTLTNETFVSLAH-SP 382
Query: 861 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 902
+ LNL+ N+++ TFS L Q+ LDL N + K+ Q
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQ 424
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 841 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
D S KLT IP + + I LNL+HN L PT F+ Q+ LD +N + K+
Sbjct: 10 DCSHLKLT-HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKLE 65
Query: 901 PQLI-VLNTLEVFKVAYNNLSGKIPDRA 927
P+L +L L+V + +N LS +I D+
Sbjct: 66 PELCQILPLLKVLNLQHNELS-QISDQT 92
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 859 TRIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAY 916
T I L+L++N L T +TFS LK + LDLSYN LH L +L + Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 917 NNLSGKIP 924
NN+ P
Sbjct: 282 NNIQRLSP 289
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Query: 270 LQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLC-EL--VLLRKLYIDNN 326
L+ L + N L++ P C + L L ++ QL +++ LC EL ++ L + NN
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN 232
Query: 327 DLRGSLPLCLANL--TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISL 384
L + + L T+L LD+SYN L ++ + S +L S+ L L N+ + +S
Sbjct: 233 QLLATSESTFSGLKWTNLTQLDLSYNNL-HDVGNGSFSYLPSLRYLSLEYNNIQR--LSP 289
Query: 385 EPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGY--VDGGTFPEFLYHQH 439
+ LS L+ Y SL F S+SL+ + +D +F Y ++
Sbjct: 290 RSFYGLSNLR-------------YLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEY 333
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 86 LSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTL 145
L L LD+ N IE + +++RGLR + +YL + ++ S S +PSL+ L
Sbjct: 404 LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTS----SFALVPSLQRL 459
Query: 146 YLSHTKFKGTVV 157
L K +
Sbjct: 460 MLRRVALKNVDI 471
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 30/172 (17%)
Query: 583 FNLTNLMTLQLDGNNFIGEIPESLSKCYM-------LRGLYLSDNHLFGKIPRWLGNLPT 635
F T++ TL L GN F ES++K + ++ L LS+++ G
Sbjct: 209 FKNTSITTLDLSGNGF----KESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------- 255
Query: 636 LQYIIMPNNNLEGPIPIEF--CQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNK 692
+ N + P F + +K DLS + IF L S FS +EQ+ L++N+
Sbjct: 256 -----FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310
Query: 693 IEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAHNYIKG 743
I ++ HL+ L+LS N L GSI +R+ + L +L L L++N+I+
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
T + + L+ N++ LT + LNLS N L F NL ++E LDLSYN
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA--QFSTFEEDSYEGNPFLCGQP---- 947
+ + L L+ + N L +PD + ++ ++ NP+ C P
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416
Query: 948 LSKSCNDN 955
LS+ N N
Sbjct: 417 LSRWLNKN 424
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 288 LANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDV 347
++ T L+ L + N++ L L KL + N L NL L VLD+
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 348 SYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
SYN + + S + L +++EL L N +P
Sbjct: 355 SYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVP 387
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 512 LPGLMELNLSRNAFNGSIPSS-FADMKMLERLDISNNQLTGEIPERMATGCFSLEILALS 570
L L++LNLS+N F GSI S F ++ LE LD+S N + + ++ G +L+ LAL
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALD 379
Query: 571 NNRLQ 575
N+L+
Sbjct: 380 TNQLK 384
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 111/450 (24%), Positives = 163/450 (36%), Gaps = 81/450 (18%)
Query: 527 GSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLT 586
G + F +M +LE LD+S N T +I + + +L L HI F
Sbjct: 195 GKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLI---LAHHIMGAGFGFH 250
Query: 587 NLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNL 646
N+ D N F G S+ R L LS +F R L L+ + + N +
Sbjct: 251 NIK--DPDQNTFAGLARSSV------RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 647 EGPIPIEFCQRDSLKILDLSNNSIFGTLPSC--FSPASIEQVHLSKNKIEGRLESIIHDN 704
F D+L++L+LS N + G L S + + + L KN I +II D
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHI-----AIIQDQ 356
Query: 705 -----PHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI----KGEIPVQLCQLKEV 755
L TLDL N+L I +P + + L+ N + K + L L E
Sbjct: 357 TFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411
Query: 756 RLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKE 815
RL +L R+P + LN+ R + G +P
Sbjct: 412 RLENLDILYFLLRVPHLQI-LILNQN------------------RFSSCSGDQTPSENPS 452
Query: 816 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI 875
F +NM L +L + G L+ + L L+HN L
Sbjct: 453 LEQLFLGENM--------LQLAWETELCWDVFEG--------LSHLQVLYLNHNYLNSLP 496
Query: 876 PTTFSNLKQIESLDLSYNLL----HGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFST 931
P FS+L + L L+ N L H +P LE+ ++ N L PD F +
Sbjct: 497 PGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NLEILDISRNQLLAPNPD--VFVS 548
Query: 932 FEEDSYEGNPFLCGQPLSKSCNDNGLTTVT 961
N F+C LS N T VT
Sbjct: 549 LSVLDITHNKFICECELSTFINWLNHTNVT 578
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 112/271 (41%), Gaps = 33/271 (12%)
Query: 512 LPGLMELNLSRNAFNG-SIPSSFADMKMLERLDISNNQ--LTGEIPERMATGCFSLEILA 568
L L L+LS+N + SF + L+ +D S+NQ L E G +L +
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFS 180
Query: 569 LSNNRLQGHIFSEKFNLTN------LMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
L+ N L + + N L L + GN + +I + S +S +
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA-------ISKSQA 233
Query: 623 FGKIPRWLGNLPTLQYIIMPN----NNLEGPIPIEFC--QRDSLKILDLSNNSIFGTLPS 676
F I L + IM +N++ P F R S++ LDLS+ +F
Sbjct: 234 FSLI---------LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 677 CFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLL 735
F ++ ++L+ NKI + + +L L+LSYN L + LP++ Y+
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 736 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
L N+I L++++ +DL N L+
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTG------EIPERMATGCFSLEI 566
PGL+E++LS N + F M+ LERL ISNN+L IP +L++
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKV 299
Query: 567 LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
L LS+N L H+ + L L LD N+ + LS + L+ L LS N
Sbjct: 300 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHN 349
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 85/206 (41%), Gaps = 51/206 (24%)
Query: 603 PESLSKCYMLRGLYLSDNHLFGKIPRWL-GNLPTLQYIIMPNNNLEGPIPIEFCQRDSLK 661
P +L L L N L +PR + N P L + M NNNLE F SL+
Sbjct: 110 PHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 662 ILDLSNNSI----FGTLPSCFS-------------PASIEQVHLSKNKI---------EG 695
L LS+N + +PS F P ++E++ S N I E
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228
Query: 696 RLESIIHDN----------PHLVTLDLSYNSLHGSIPN------RIDRLPQLNYLLLAHN 739
+ + H+N P LV +DLSYN L + + R++RL N L+A N
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288
Query: 740 YIKGEIPVQLCQLKEVRLIDLSHNNL 765
IP ++++DLSHN+L
Sbjct: 289 LYGQPIPT-------LKVLDLSHNHL 307
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
++P + +P L L L RN + F + L L +SNN L I +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATT 165
Query: 563 SLEILALSNNRLQG-------HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRG- 614
SL+ L LS+NRL +F + L TL + + E+ S + ++RG
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI--AVEELDASHNSINVVRGP 223
Query: 615 -------LYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSN 667
L L N+L WL N P L + + N LE + F + L+ L +SN
Sbjct: 224 VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 668 NSIFG------TLPS--CFSPASIEQVHLSKNKIE-GRLESIIHDNPHLVTLDLS 713
N + +P+ + +H+ +N+ + RLE++ D+ +VTL LS
Sbjct: 282 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 336
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 12/163 (7%)
Query: 492 TLDVF-NNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSF--ADMKMLERLDISNNQ 548
T +VF ++ FQG + L L L L RN + +M LE LD+S N
Sbjct: 361 TQNVFTDSVFQG------CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 549 LTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSK 608
L +R S+ +L LS+N L G +F ++ L NN I IP+ ++
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDVTH 471
Query: 609 CYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIP 651
L+ L ++ N L L +LQYI + +N + P
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 818 VQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ-IGYLTRIHALNLSHNNLTGTIP 876
V TKNMS S+ +D+S N L + + I LNLS N LTG++
Sbjct: 395 VALMTKNMS---------SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV- 444
Query: 877 TTFSNL-KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA--QFSTFE 933
F L +++ LDL N + IP + L L+ VA N L +PD + ++ +
Sbjct: 445 --FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQ 500
Query: 934 EDSYEGNPFLCGQP 947
NP+ C P
Sbjct: 501 YIWLHDNPWDCTCP 514
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 24/150 (16%)
Query: 287 CLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCL--ANLTSLRV 344
C + +S L + N T ++ G L L+ L + N L+ + L N++SL
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407
Query: 345 LDVSYNQLTE----------------NISSSSLMHLT------SIEELILSNNHFFQIPI 382
LDVS N L N+SS+ L ++ L L NN IP
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPK 467
Query: 383 SLEPLFNLSKLQTFNGEINAQTESHYDSLT 412
+ L L +L + ++ + + +D LT
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLT 497
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTG------EIPERMATGCFSLEI 566
PGL+E++LS N + F M+ LERL ISNN+L IP +L++
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKV 305
Query: 567 LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
L LS+N L H+ + L L LD N+ + LS + L+ L LS N
Sbjct: 306 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHN 355
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 84/206 (40%), Gaps = 51/206 (24%)
Query: 603 PESLSKCYMLRGLYLSDNHLFGKIPRWL-GNLPTLQYIIMPNNNLEGPIPIEFCQRDSLK 661
P +L L L N L +PR + N P L + M NNNLE F SL+
Sbjct: 116 PHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 662 ILDLSNNSI----FGTLPSCFS-------------PASIEQVHLSKNKI---------EG 695
L LS+N + +PS F P ++E++ S N I E
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234
Query: 696 RLESIIHDN----------PHLVTLDLSYNSLHGSI------PNRIDRLPQLNYLLLAHN 739
+ + H+N P LV +DLSYN L + R++RL N L+A N
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 740 YIKGEIPVQLCQLKEVRLIDLSHNNL 765
IP ++++DLSHN+L
Sbjct: 295 LYGQPIPT-------LKVLDLSHNHL 313
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 43/242 (17%)
Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
++P + +P L L L RN + F + L L +SNN L ER+ F
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-----ERIEDDTF 167
Query: 563 ----SLEILALSNNRLQGHI----------FSEKFNLTNLMTLQLDGNNFIGEIPESLSK 608
SL+ L LS+NRL H+ + +NL + + + + + E+ S +
Sbjct: 168 QATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNS 222
Query: 609 CYMLRG--------LYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSL 660
++RG L L N+L WL N P L + + N LE + F + L
Sbjct: 223 INVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280
Query: 661 KILDLSNNSIFG------TLPS--CFSPASIEQVHLSKNKIE-GRLESIIHDNPHLVTLD 711
+ L +SNN + +P+ + +H+ +N+ + RLE++ D+ +VTL
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340
Query: 712 LS 713
LS
Sbjct: 341 LS 342
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 265 CQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELV-LLRKLYI 323
+L++L L I + D + A ++Q LY N + + P + + V LL L +
Sbjct: 77 VELLNLNDLQIEEID-----TYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVL 130
Query: 324 DNNDLRGSLPL-CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
+ NDL SLP N L L +S N L E I + TS++ L LS+N + +
Sbjct: 131 ERNDL-SSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDL 188
Query: 383 SLEP 386
SL P
Sbjct: 189 SLIP 192
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 46/220 (20%)
Query: 529 IPSSFAD-MKMLERLDISNNQLTGE-IPERMATGCF-SLEILALSNNRLQ-----GHIFS 580
+P SF+ +K LE LD+S N + E + G + SL+ L LS N L+ G I
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL- 383
Query: 581 EKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYII 640
L NL +L + N F +P+S +R L LS
Sbjct: 384 --LTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSST-------------------- 420
Query: 641 MPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESI 700
G ++ C +L++LD+SNN++ S F P ++++++S+NK++ ++
Sbjct: 421 -------GIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLPR-LQELYISRNKLKTLPDAS 470
Query: 701 IHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAHN 739
+ P L+ + +S N L S+P+ I DRL L + L N
Sbjct: 471 LF--PVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 26/293 (8%)
Query: 612 LRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI- 670
L+ L L+ HL ++P L L TL+ +++ N E I SL L + N+
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 671 --FGTLPSCFSP-ASIEQVHLSKNKIEGR--LESIIHDNPHLVTLDLSYNSLHGSIPNRI 725
GT C ++ ++ LS + IE + + HL +L+LSYN
Sbjct: 339 LELGT--GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 726 DRLPQLNYLLLAHNYIK---GEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGY 782
PQL L LA +K + P Q L +++++LSH+ L++ S + +
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHS---------LLDISSEQLF 445
Query: 783 HGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI--LTSMSGI 840
G A + + + S +G+ E + + ++S Q L M+ +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505
Query: 841 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
DLS N+LT + +L I+ LNL+ N+++ +P+ L Q +++L N
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPL-CLANLTSL 342
LP L +++L+ L S+N+ L L I N R L CL NL +L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 343 RVLDVSYNQL-TENISSSSLMHLTSIEELILSNNHFFQIPISLE 385
R LD+S++ + T + + L +L+ ++ L LS N P+SL+
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE----PLSLK 392
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
+ L ++ L + + D P LA +++LQVLY NQ+T NISP L L L+ L
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLS 163
Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
I NN + P LANL+ L L N++++ S L L ++ E+ L +N +
Sbjct: 164 IGNNQVNDLTP--LANLSKLTTLRADDNKISD---ISPLASLPNLIEVHLKDNQISDV-- 216
Query: 383 SLEPLFNLSKL 393
PL NLS L
Sbjct: 217 --SPLANLSNL 225
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 76 GSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQS 135
G I+G+ L+NL L++ N I +L + L K+ L L G+ + K + +
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLT---PLKNLTKITELELSGNPL------KNVSA 108
Query: 136 IGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHL 195
I L S+KTL L+ T+ L +NL+ L L DL+ + +A T+L++L
Sbjct: 109 IAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYL---DLNQITNISPLAGLTNLQYL 162
Query: 196 SM 197
S+
Sbjct: 163 SI 164
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 15/143 (10%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
L + EL LS N S+ A ++ ++ LD+++ Q+T P G +L++L L
Sbjct: 90 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDL 144
Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIP--ESLSKCYMLRGLYLSDNHLFGKIPRW 629
N++ S LTNL L + GNN + ++ +LSK LR DN + P
Sbjct: 145 NQITN--ISPLAGLTNLQYLSI-GNNQVNDLTPLANLSKLTTLRA---DDNKISDISP-- 196
Query: 630 LGNLPTLQYIIMPNNNLEGPIPI 652
L +LP L + + +N + P+
Sbjct: 197 LASLPNLIEVHLKDNQISDVSPL 219
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 55/161 (34%)
Query: 262 QGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKL 321
+G+ L +L GL ++DN + D P L N+T + L S N L N+S
Sbjct: 63 EGIQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPL-KNVS------------ 107
Query: 322 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE---------------------NISSSS 360
+A L S++ LD++ Q+T+ NI S
Sbjct: 108 -------------AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI--SP 152
Query: 361 LMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEIN 401
L LT+++ L + NN L PL NLSKL T + N
Sbjct: 153 LAGLTNLQYLSIGNNQVND----LTPLANLSKLTTLRADDN 189
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 126/317 (39%), Gaps = 83/317 (26%)
Query: 80 IKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSL 139
I+G+ L+NLE L++ GN I ++ L KL LY+G + I I
Sbjct: 59 IQGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITDISA---------- 105
Query: 140 PSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQD 199
L N TNL EL L+E + I+ + L +L+
Sbjct: 106 ---------------------LQNLTNLRELYLNEDN---------ISDISPLANLTKXY 135
Query: 200 CVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXXXKHTI 259
+ GA H NL D+ + N+L + +
Sbjct: 136 SLNLGANH--------NLS--DLSPLSNXTGLNYLTVTESKVKDVTP------------- 172
Query: 260 LDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLR 319
+ L L L + N + D P LA++TSL A NQ+T +I+P + L
Sbjct: 173 ----IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-VANXTRLN 224
Query: 320 KLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQ 379
L I NN + P LANL+ L L++ NQ+++ +++ LT ++ L + +N
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD---INAVKDLTKLKXLNVGSNQISD 279
Query: 380 IPISLEPLFNLSKLQTF 396
I + L NLS+L +
Sbjct: 280 ISV----LNNLSQLNSL 292
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 258 TILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVL 317
TI D+ L HL L + N ++ P + +TSL+ L A +L S + +L+
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129
Query: 318 LRKLYIDNNDLRG-SLPLCLANLTSLRVLDVSYN 350
L+KL + +N + LP +NLT+L +D+SYN
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL-TGTIPTTFSNLKQIESLDLSY 892
LTS+ + KL IG L + LN++HN + + +P FSNL + +DLSY
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162
Query: 893 NLLHGKIPPQLIVLNTLEVFK 913
N + Q I +N L+ +
Sbjct: 163 NYI------QTITVNDLQFLR 177
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 25/172 (14%)
Query: 77 SIDIKGLNSLSNLEELDMTGNAIENLV-VPKDFR---------GLRKLNTL---YLGGSG 123
S DI + L+N+ + + G +I+ L VPK F+ L++ TL +L
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 334
Query: 124 IPRIDGSKVLQSIGSLPSLKTLYLSHTK--FKGTVVNQKLHNFTNLEELILDESDLHVSQ 181
+ GS + + LPSL L LS F G ++++L L DL +
Sbjct: 335 LTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCC------SYSDLGTNSLRHLDLSFNG 387
Query: 182 LLQSIASFT---SLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVN 230
+ A+F L+HL Q LK FL + L YLD+ + ++
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 35/216 (16%)
Query: 703 DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIK-------------------- 742
D P L +L L+ N GSI + LP L+YL L+ N +
Sbjct: 326 DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 743 ---GEI--PVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRAS 797
G I L+E++ +D H+ L R+ SL + + +++ T+
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLK-RVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442
Query: 798 VYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY 857
++ G +S K F +S + T+++ +DLS +L
Sbjct: 443 IFL-----GLTSLNTLKMAGNSFKDNTLSNVFANT--TNLTFLDLSKCQLEQISWGVFDT 495
Query: 858 LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
L R+ LN+SHNNL + ++ L + +LD S+N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 258 TILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVL 317
TI D+ L HL L + N ++ P + +TSL+ L A +L S + +L+
Sbjct: 65 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 124
Query: 318 LRKLYIDNNDLRG-SLPLCLANLTSLRVLDVSYN 350
L+KL + +N + LP +NLT+L +D+SYN
Sbjct: 125 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL-TGTIPTTFSNLKQIESLDLSY 892
LTS+ + KL IG L + LN++HN + + +P FSNL + +DLSY
Sbjct: 98 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 157
Query: 893 NLLHGKIPPQLIVLNTLEVFK 913
N + Q I +N L+ +
Sbjct: 158 NYI------QTITVNDLQFLR 172
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 25/172 (14%)
Query: 77 SIDIKGLNSLSNLEELDMTGNAIENLV-VPKDFR---------GLRKLNTL---YLGGSG 123
S DI + L+N+ + + G +I+ L VPK F+ L++ TL +L
Sbjct: 270 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 329
Query: 124 IPRIDGSKVLQSIGSLPSLKTLYLSHTK--FKGTVVNQKLHNFTNLEELILDESDLHVSQ 181
+ GS + + LPSL L LS F G ++++L L DL +
Sbjct: 330 LTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCC------SYSDLGTNSLRHLDLSFNG 382
Query: 182 LLQSIASFT---SLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVN 230
+ A+F L+HL Q LK FL + L YLD+ + ++
Sbjct: 383 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 434
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 76 GSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQS 135
ID L+ LE+LD++ NA +V P FRGL L+TL+L G+ + G + +
Sbjct: 68 AGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL-GPGLFRG 126
Query: 136 IGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELIL 172
+ +L+ LYL + + + + NL L L
Sbjct: 127 LA---ALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFL 159
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 518 LNLSRNAFNGSIPSSFADMKMLERLDISNN-QLTGEIP-------------------ERM 557
L L NA G ++F + +LE+LD+S+N QL P + +
Sbjct: 60 LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL 119
Query: 558 ATGCF----SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE-SLSKCYML 612
G F +L+ L L +N LQ + +L NL L L GN I +PE + + L
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR-IPSVPEHAFRGLHSL 178
Query: 613 RGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIE-FCQRDSLKILDLSNN 668
L L NH+ P +L L + + NNL +P E SL+ L L++N
Sbjct: 179 DRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLVPLRSLQYLRLNDN 234
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
DI L +L LEEL+++GN ++ L+ P F+GL L L+L + + I+ + +
Sbjct: 170 DIPNLTALVRLEELELSGNRLD-LIRPGSFQGLTSLRKLWLMHAQVATIERN----AFDD 224
Query: 139 LPSLKTLYLSH 149
L SL+ L LSH
Sbjct: 225 LKSLEELNLSH 235
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 310 PGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEE 369
P L LV L +L + N L P LTSLR L + + Q+ I ++ L S+EE
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA-TIERNAFDDLKSLEE 230
Query: 370 LILSNNHFFQIPISL-EPLFNLSKLQ 394
L LS+N+ +P L PL L ++
Sbjct: 231 LNLSHNNLMSLPHDLFTPLHRLERVH 256
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 23/169 (13%)
Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN 325
L HL+ L + N +R + SL L N+LT + L LR+L++ N
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 326 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSS----------------------LMH 363
N + + SLR LD+ + E IS ++ L
Sbjct: 117 NPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTA 176
Query: 364 LTSIEELILSNNHFFQI-PISLEPLFNLSKLQTFNGEINAQTESHYDSL 411
L +EEL LS N I P S + L +L KL + ++ + +D L
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 849 GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP----QLI 904
E+P I TR LNL N++ TF +L+ +E L LS NL+ KI L
Sbjct: 27 AEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLP 83
Query: 905 VLNTLEVFKVAYNNLSGKIPDRA--QFSTFEEDSYEGNPF 942
LNTLE+F +N +P +A S E NP
Sbjct: 84 SLNTLELF----DNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
L + ++LS N+L P LT + L L H + F +LK +E L+LS+N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 46/220 (20%)
Query: 529 IPSSFAD-MKMLERLDISNNQLTGE-IPERMATGCF-SLEILALSNNRLQ-----GHIFS 580
+P SF+ +K LE LD+S N + E + G + SL+ L LS N L+ G I
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL- 409
Query: 581 EKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYII 640
L NL +L + N F +P+S +R L LS
Sbjct: 410 --LTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSST-------------------- 446
Query: 641 MPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESI 700
G ++ C +L++LD+SNN++ S F P ++++++S+NK++ ++
Sbjct: 447 -------GIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLKTLPDAS 496
Query: 701 IHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAHN 739
+ P L+ + ++ N L S+P+ I DRL L + L N
Sbjct: 497 LF--PVLLVMKIASNQLK-SVPDGIFDRLTSLQKIWLHTN 533
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 27/143 (18%)
Query: 271 QGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRG 330
Q LY+ DN + P ++ +L+ LY SNQL G
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-------------------------G 77
Query: 331 SLPL-CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFN 389
+LP+ +LT L VLD+ NQLT + S+ L ++EL + N ++P +E L +
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTH 136
Query: 390 LSKLQTFNGEINAQTESHYDSLT 412
L+ L ++ + +D L+
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLS 159
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
+ L ++ L + + D P LA +++LQVLY NQ+T NISP L L L+ L
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLS 157
Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
I N + P LANL+ L L N++++ S L L ++ E+ L NN +
Sbjct: 158 IGNAQVSDLTP--LANLSKLTTLKADDNKISD---ISPLASLPNLIEVHLKNNQISDV-- 210
Query: 383 SLEPLFNLSKL 393
PL N S L
Sbjct: 211 --SPLANTSNL 219
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 76 GSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQS 135
G I+G+ L+NL L++ N I +L + L K+ L L G+ + K + +
Sbjct: 52 GVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPL------KNVSA 102
Query: 136 IGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHL 195
I L S+KTL L+ T+ L +NL+ L L DL+ + +A T+L++L
Sbjct: 103 IAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYL---DLNQITNISPLAGLTNLQYL 156
Query: 196 SMQDCVLKGALHGQDFLKFKNLEYL 220
S+ G D NL L
Sbjct: 157 SI------GNAQVSDLTPLANLSKL 175
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
L + EL LS N S+ A ++ ++ LD+++ Q+T P G +L++L L
Sbjct: 84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDL 138
Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLG 631
N++ S LTNL L + GN + ++ L+ L L DN + P L
Sbjct: 139 NQITN--ISPLAGLTNLQYLSI-GNAQVSDL-TPLANLSKLTTLKADDNKISDISP--LA 192
Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
+LP L + + NN + P+ +L I+ L+N +I
Sbjct: 193 SLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTI 229
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 49/158 (31%)
Query: 262 QGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKL 321
+G+ L +L GL ++DN + D P L N+T + L S N L N+S
Sbjct: 57 EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL-KNVS------------ 101
Query: 322 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI- 380
+A L S++ LD++ Q+T+ + L L++++ L L N I
Sbjct: 102 -------------AIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITNIS 145
Query: 381 PIS-----------------LEPLFNLSKLQTFNGEIN 401
P++ L PL NLSKL T + N
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 71 DNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGS 130
DN++ D+ L +L+ + EL+++GN ++N+ GL+ + TL L + I +
Sbjct: 72 DNQIT---DLAPLKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDV--- 122
Query: 131 KVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFT 190
+ L +L+ LYL + L TNL+ L + + + L +++ T
Sbjct: 123 ---TPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176
Query: 191 SLK 193
+LK
Sbjct: 177 TLK 179
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 145/357 (40%), Gaps = 56/357 (15%)
Query: 552 EIPERMATGCFSLEILALSNNRLQGHIFSEKFN-----LTNLMTLQLDGNNFIGEIPESL 606
+I M G + + +L+ LQ H FS+ + T L L L + G +P +
Sbjct: 239 DISSAMLKGLCEMSVESLN---LQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGM 294
Query: 607 SKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR-DSLKILDL 665
+L+ L LS NH N P+L ++ + N + + + ++ +L+ LDL
Sbjct: 295 KGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDL 354
Query: 666 SNNSIFGTLPSCFSP-----ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGS 720
S+N I + C S + ++ ++LS N+ G + P L LDL++ LH +
Sbjct: 355 SHNDIEAS--DCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHIN 412
Query: 721 IPNR-IDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLN 779
P L L L L + ++ L L +R H NL G N
Sbjct: 413 APQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLR-----HLNLKG-----------N 456
Query: 780 EGYHGEVAPTSIWCRRASV---YRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTS 836
G + T++ S+ S+C + +++ G+
Sbjct: 457 HFQDGTITKTNLLQTVGSLEVLILSSC--------------GLLSIDQQAFHSLGK---- 498
Query: 837 MSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
MS +DLS N LT + + +L I+ LNL+ N++ P L Q +++LS+N
Sbjct: 499 MSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 834 LTSMSGIDLSCNKLTGE--IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 891
L ++ +DLS N + Q+ L+ + LNLSHN G F Q+E LDL+
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 892 YNLLHGKIPPQLIV-LNTLEVFKVAY 916
+ LH P L+ L+V + Y
Sbjct: 406 FTRLHINAPQSPFQNLHFLQVLNLTY 431
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 21/204 (10%)
Query: 1 MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXX 60
++++ F F QL+ LDL+ ++ G + L LK L L+ NHF+
Sbjct: 266 ISSTTFQCFTQLQELDLTATHLKGLPSG-----MKGLNLLKKLVLSVNHFDQLCQISAAN 320
Query: 61 XXXXXXXXXADNRLNGSIDIKGLNSLSNLEELDMTGNAIE-NLVVPKDFRGLRKLNTLYL 119
N + + L L NL+ LD++ N IE + + L L TL L
Sbjct: 321 FPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Query: 120 GGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVN---QKLH--NFTNLEELILDE 174
+ + Q+ P L+ L L+ T+ Q LH NL LD
Sbjct: 381 SHNEPLGLQS----QAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDT 436
Query: 175 SDLHVSQLLQSIASFTSLKHLSMQ 198
S+ H+ +A L+HL+++
Sbjct: 437 SNQHL------LAGLPVLRHLNLK 454
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
DI L +L LEEL+++GN ++ L+ P F+GL L L+L + + I+ + +
Sbjct: 170 DIPNLTALVRLEELELSGNRLD-LIRPGSFQGLTSLRKLWLMHAQVATIERN----AFDD 224
Query: 139 LPSLKTLYLSH 149
L SL+ L LSH
Sbjct: 225 LKSLEELNLSH 235
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 310 PGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEE 369
P L LV L +L + N L P LTSLR L + + Q+ I ++ L S+EE
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA-TIERNAFDDLKSLEE 230
Query: 370 LILSNNHFFQIPISL-EPLFNLSKLQ 394
L LS+N+ +P L PL L ++
Sbjct: 231 LNLSHNNLMSLPHDLFTPLHRLERVH 256
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 23/169 (13%)
Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN 325
L HL+ L + N +R + SL L N+LT + L LR+L++ N
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 326 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSS----------------------LMH 363
N + + SLR LD+ + E IS ++ L
Sbjct: 117 NPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTA 176
Query: 364 LTSIEELILSNNHFFQI-PISLEPLFNLSKLQTFNGEINAQTESHYDSL 411
L +EEL LS N I P S + L +L KL + ++ + +D L
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 849 GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP----QLI 904
E+P I TR LNL N++ TF +L+ +E L LS NL+ KI L
Sbjct: 27 AEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLP 83
Query: 905 VLNTLEVFKVAYNNLSGKIPDRA--QFSTFEEDSYEGNPF 942
LNTLE+F +N +P +A S E NP
Sbjct: 84 SLNTLELF----DNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 276 RDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLC 335
+D+ D L W ++++LQ+ NIS + + L +LY++ N L LP
Sbjct: 217 KDSKYDDQL-WHALDLSNLQIF---------NISANIFKYDFLTRLYLNGNSLT-ELPAE 265
Query: 336 LANLTSLRVLDVSYNQLT 353
+ NL++LRVLD+S+N+LT
Sbjct: 266 IKNLSNLRVLDLSHNRLT 283
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 30/168 (17%)
Query: 583 FNLTNLMTLQLDGNNFIGEIPESLSKCYM-------LRGLYLSDNHLFGKIPRWLGNLPT 635
F T++ TL L GN F ES++K + ++ L LS+++ G
Sbjct: 209 FKNTSITTLDLSGNGF----KESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------- 255
Query: 636 LQYIIMPNNNLEGPIPIEF--CQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNK 692
+ N + P F + +K DLS + IF L S FS +EQ+ L++N+
Sbjct: 256 -----FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310
Query: 693 IEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAHN 739
I ++ HL L L N L S+P+ I DRL L + L N
Sbjct: 311 INKIDDNAFWGLTHLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 357
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 506 VEIGTYLP-GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSL 564
EI T LP + E+ L +N P +F+ K L R+D+SNNQ++ P+ G SL
Sbjct: 24 TEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-GLRSL 82
Query: 565 EILALSNNRL 574
L L N++
Sbjct: 83 NSLVLYGNKI 92
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 89 LEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGS 130
L +D++ N I L P F+GLR LN+L L G+ I + S
Sbjct: 58 LRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS 98
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 506 VEIGTYLP-GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSL 564
EI T LP + E+ L +N P +F+ K L R+D+SNNQ++ P+ G SL
Sbjct: 24 TEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-GLRSL 82
Query: 565 EILALSNNRL 574
L L N++
Sbjct: 83 NSLVLYGNKI 92
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 89 LEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGS 130
L +D++ N I L P F+GLR LN+L L G+ I + S
Sbjct: 58 LRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS 98
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 119/307 (38%), Gaps = 66/307 (21%)
Query: 86 LSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTL 145
+ ++ELD+T + L P G+ L L L + ++ + S PSL+ L
Sbjct: 276 FTRVQELDLTAAHLNGL--PSGIEGMNSLKKLVLNANSFDQL----CQINAASFPSLRDL 329
Query: 146 YLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKG- 204
Y+ K + + L NL++L L SD+ S +L+HL +
Sbjct: 330 YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCN--LQLKNLRHLQYLNLSYNEP 387
Query: 205 -ALHGQDFLKFKNLEYLDMGWVQVDV--------NTNFLQIVGESMPXXXXXXXXXXXXX 255
L Q F + LE LD+ + + V N + L+++ S
Sbjct: 388 LGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS--------------- 432
Query: 256 KHTILDQG----LCQLVHLQGLYIRDNDLRDG---LPWCLANMTSLQVLYASSNQLTGNI 308
H +LD L L L+ L ++ N +DG L + SL++L SS
Sbjct: 433 -HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSS------- 484
Query: 309 SPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIE 368
C L L ID G L ++ LD+S+N LT + S +L HL +
Sbjct: 485 ----CNL-----LSIDQQAFHG--------LRNVNHLDLSHNSLTGD-SMDALSHLKGLY 526
Query: 369 ELILSNN 375
+ SNN
Sbjct: 527 LNMASNN 533
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 139/314 (44%), Gaps = 43/314 (13%)
Query: 600 GEIPESLSKCYM-LRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRD 658
++ S +C+ ++ L L+ HL G +P + + +L+ +++ N+ + + CQ +
Sbjct: 266 SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFD-----QLCQIN 319
Query: 659 SLKILDLSNNSIFGTL------PSCFSP-ASIEQVHLSKNKIEGR--LESIIHDNPHLVT 709
+ L + I G + C +++++ LS + IE + + HL
Sbjct: 320 AASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQY 379
Query: 710 LDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNLSGR 768
L+LSYN G PQL L +A ++ + P Q L +R+++LSH
Sbjct: 380 LNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH------ 433
Query: 769 IPPCLVNTS-------LNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFT 821
CL++TS L + H + S + S+ ++ L +G E + +
Sbjct: 434 ---CLLDTSNQHLLAGLQDLRHLNLQGNSF--QDGSISKTNLLQM-----VGSLEILILS 483
Query: 822 TKNMSYYYQGRI--LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTF 879
+ N+ Q L +++ +DLS N LTG+ + +L ++ LN++ NN+ P
Sbjct: 484 SCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIPPHLL 542
Query: 880 SNLKQIESLDLSYN 893
L Q ++LS+N
Sbjct: 543 PALSQQSIINLSHN 556
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 116/269 (43%), Gaps = 28/269 (10%)
Query: 514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR 573
L +L L+ N+F+ + A L L I N ++ R +L+ L LS++
Sbjct: 301 SLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSD 360
Query: 574 LQGHIFS--EKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRW-L 630
++ + NL +L L L N +G ++ +C L L ++ HL K P
Sbjct: 361 IEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPF 420
Query: 631 GNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSK 690
NL L+ + + + L+ L+ L+L NS F SI + +L
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNS--------FQDGSISKTNLL- 471
Query: 691 NKIEGRLESIIHDNPHLVT--------------LDLSYNSLHGSIPNRIDRLPQLNYLLL 736
++ G LE +I + +L++ LDLS+NSL G + + L L YL +
Sbjct: 472 -QMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNM 529
Query: 737 AHNYIKGEIPVQLCQLKEVRLIDLSHNNL 765
A N I+ P L L + +I+LSHN L
Sbjct: 530 ASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 854 QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
Q+ L + LNLS+N G F Q+E LD+++ LH K P
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 68/175 (38%), Gaps = 23/175 (13%)
Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN 325
L HL+ L + N +R + SL L N LT S L LR+L++ N
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156
Query: 326 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSS----------------------LMH 363
N + + SL LD+ + E IS + L
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP 216
Query: 364 LTSIEELILSNNHFFQI-PISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQL 417
L +EEL +S NHF +I P S L +L KL N +++ + +D L +L
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 490 LATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPS-SFADMKMLERLDISNNQ 548
L TL++F+N+ IP YL L EL L N SIPS +F + L RLD+ +
Sbjct: 125 LNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182
Query: 549 LTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLM---TLQLDGNNFIGEIPES 605
I E G F+L+ L L ++ + NLT L+ L++ GN+F P S
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIK-----DMPNLTPLVGLEELEMSGNHFPEIRPGS 237
Query: 606 LSKCYMLRGLYLSDNHL 622
L+ L++ ++ +
Sbjct: 238 FHGLSSLKKLWVMNSQV 254
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
D+ L L LEEL+M+GN + P F GL L L++ S + I+ + +
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERN----AFDG 264
Query: 139 LPSLKTLYLSH 149
L SL L L+H
Sbjct: 265 LASLVELNLAH 275
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 510 TYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMA-TGCFSLEILA 568
T L GL EL +S N F P SF + L++L + N+Q++ + ER A G SL L
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS--LIERNAFDGLASLVELN 272
Query: 569 LSNNRL 574
L++N L
Sbjct: 273 LAHNNL 278
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
LP + +L VL S N+LT L L L++LY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 344 VLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
L ++ NQLTE + + L L +++ L+L N + IP
Sbjct: 152 KLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
LP + +L VL S N+LT L L L++LY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 344 VLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
L ++ NQLTE + + L L +++ L+L N + IP
Sbjct: 152 KLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 77 SIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSI 136
+I+ SLS+L L +TGN I++L + F GL L L + + ++ I
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 120
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
G L +LK L ++H + + + N TNLE L L + +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 855 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 909
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 257 HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELV 316
TI D L HL L + N ++ + ++SLQ L A L + + L
Sbjct: 65 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
Query: 317 LLRKLYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 352
L++L + +N ++ LP +NLT+L LD+S N++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 77 SIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSI 136
+I+ SLS+L L +TGN I++L + F GL L L + + ++ I
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 121
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
G L +LK L ++H + + + N TNLE L L + +
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 855 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 909
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 257 HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELV 316
TI D L HL L + N ++ + ++SLQ L A L + + L
Sbjct: 66 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 125
Query: 317 LLRKLYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 352
L++L + +N ++ LP +NLT+L LD+S N++
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 495 VFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIP 554
VFN Q I VE+GT L + AF G MK L + I++ +T IP
Sbjct: 140 VFNGLNQ-MIVVELGTN--PLKSSGIENGAFQG--------MKKLSYIRIADTNIT-TIP 187
Query: 555 ERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRG 614
+ + SL L L N++ + L NL L L N+ SL+ LR
Sbjct: 188 QGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244
Query: 615 LYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFC 655
L+L++N L K+P L + +Q + + NNN+ +FC
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 53/256 (20%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
L L L L N + P +FA + LERL +S NQL E+PE+M L +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEI 133
Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLG 631
+++ +F+ L ++ ++L N L + G +
Sbjct: 134 TKVRKSVFN---GLNQMIVVELGTN--------PLKSSGIENGAFQG------------- 169
Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKN 691
+ L YI + + N+ T+P P S+ ++HL N
Sbjct: 170 -MKKLSYIRIADTNIT-------------------------TIPQGL-PPSLTELHLDGN 202
Query: 692 KIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 751
KI + + +L L LS+NS+ + P L L L +N + ++P L
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261
Query: 752 LKEVRLIDLSHNNLSG 767
K ++++ L +NN+S
Sbjct: 262 HKYIQVVYLHNNNISA 277
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
L +L++D N + L L +L L +S+N ++ + + SL + + EL L+NN
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKL 252
Query: 378 FQIPISL 384
++P L
Sbjct: 253 VKVPGGL 259
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 77 SIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSI 136
+I+ SLS+L L +TGN I++L + F GL L L + + ++ I
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 122
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
G L +LK L ++H + + + N TNLE L L + +
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 855 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 909
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 257 HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELV 316
TI D L HL L + N ++ + ++SLQ L A L + + L
Sbjct: 67 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 126
Query: 317 LLRKLYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 352
L++L + +N ++ LP +NLT+L LD+S N++
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 495 VFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIP 554
VFN Q I VE+GT L + AF G MK L + I++ +T IP
Sbjct: 140 VFNGLNQ-MIVVELGTN--PLKSSGIENGAFQG--------MKKLSYIRIADTNIT-TIP 187
Query: 555 ERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRG 614
+ + SL L L N++ + L NL L L N+ SL+ LR
Sbjct: 188 QGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244
Query: 615 LYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFC 655
L+L++N L K+P L + +Q + + NNN+ +FC
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 53/256 (20%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
L L L L N + P +FA + LERL +S NQL E+PE+M L +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEI 133
Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLG 631
+++ +F+ L ++ ++L N L + G +
Sbjct: 134 TKVRKSVFN---GLNQMIVVELGTN--------PLKSSGIENGAFQG------------- 169
Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKN 691
+ L YI + + N+ T+P P S+ ++HL N
Sbjct: 170 -MKKLSYIRIADTNIT-------------------------TIPQGL-PPSLTELHLDGN 202
Query: 692 KIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 751
KI + + +L L LS+NS+ + P L L L +N + ++P L
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261
Query: 752 LKEVRLIDLSHNNLSG 767
K ++++ L +NN+S
Sbjct: 262 HKYIQVVYLHNNNISA 277
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
L +L++D N + L L +L L +S+N ++ + + SL + + EL L+NN
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKL 252
Query: 378 FQIPISL 384
++P L
Sbjct: 253 VKVPGGL 259
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 77 SIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSI 136
+I+ SLS+L L +TGN I++L + F GL L L + + ++ I
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 121
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
G L +LK L ++H + + + N TNLE L L + +
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 855 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 909
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 257 HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELV 316
TI D L HL L + N ++ + ++SLQ L A L + + L
Sbjct: 66 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 125
Query: 317 LLRKLYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 352
L++L + +N ++ LP +NLT+L LD+S N++
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
LP + +L VL S N+LT L L L++LY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 344 VLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
L ++ NQLTE + + L L +++ L+L N + IP
Sbjct: 152 KLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 77 SIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSI 136
+I+ SLS+L L +TGN I++L + F GL L L + + ++ I
Sbjct: 90 TIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENFP----I 144
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
G L +LK L ++H + + + N TNLE L L + +
Sbjct: 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 855 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 909
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 14/228 (6%)
Query: 668 NSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYN--SLHGSIPNRI 725
N FG P+ S++++ + NK + D P L LDLS N S G
Sbjct: 337 NCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSD 393
Query: 726 DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGE 785
L YL L+ N + + L+++ +D H+NL ++ V SL + +
Sbjct: 394 FGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLD 451
Query: 786 VAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCN 845
++ T V + G SS + K F + + L +++ +DLS
Sbjct: 452 ISHT-----HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQC 504
Query: 846 KLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
+L PT L+ + LN+SHNN + L ++ LD S N
Sbjct: 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 257 HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELV 316
TI D L HL L + N ++ + ++SLQ L A L + + L
Sbjct: 89 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148
Query: 317 LLRKLYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 352
L++L + +N ++ LP +NLT+L LD+S N++
Sbjct: 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 91/269 (33%), Gaps = 69/269 (25%)
Query: 71 DNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDF---------------------- 108
D L+G ID+ N L+N+ + IE + KDF
Sbjct: 292 DYYLDGIIDL--FNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKFGQFPTL 346
Query: 109 --RGLRKLN-TLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHT--KFKGTVVNQKLHN 163
+ L++L T GG+ +D LPSL+ L LS FKG +
Sbjct: 347 KLKSLKRLTFTSNKGGNAFSEVD----------LPSLEFLDLSRNGLSFKGCCSQS---D 393
Query: 164 FTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMG 223
F + LD S V + + L+HL Q LK FL +NL YLD+
Sbjct: 394 FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453
Query: 224 WVQVDVNTN----------FLQIVGESMPXXXXXXXXXXXXXKHTILDQGLCQLVHLQGL 273
V N L++ G S T LD CQL L
Sbjct: 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLEQLS-- 510
Query: 274 YIRDNDLRDGLPWCLANMTSLQVLYASSN 302
P +++SLQVL S N
Sbjct: 511 -----------PTAFNSLSSLQVLNMSHN 528
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 77 SIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSI 136
+I+ SLS+L L +TGN I++L + F GL L L + + ++ I
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVALETNLASLENFP----I 122
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
G L +LK L ++H + + + N TNLE L L + +
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 855 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 909
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 257 HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELV 316
TI D L HL L + N ++ + ++SLQ L A L + + L
Sbjct: 67 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLK 126
Query: 317 LLRKLYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 352
L++L + +N ++ LP +NLT+L LD+S N++
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 77 SIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSI 136
+I+ SLS+L L +TGN I++L + F GL L L + + ++ I
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENFP----I 120
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
G L +LK L ++H + + + N TNLE L L + +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 855 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 909
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 14/228 (6%)
Query: 668 NSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYN--SLHGSIPNRI 725
N FG P+ S++++ + NK + D P L LDLS N S G
Sbjct: 313 NCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 726 DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGE 785
L YL L+ N + + L+++ +D H+NL ++ V SL + +
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLD 427
Query: 786 VAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCN 845
++ T V + G SS + K F + + L +++ +DLS
Sbjct: 428 ISHT-----HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQC 480
Query: 846 KLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
+L PT L+ + LN+SHNN + L ++ LD S N
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 257 HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELV 316
TI D L HL L + N ++ + ++SLQ L A L + + L
Sbjct: 65 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
Query: 317 LLRKLYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 352
L++L + +N ++ LP +NLT+L LD+S N++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 77 SIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSI 136
+I+ SLS+L L +TGN I++L + F GL L L + + ++ I
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENFP----I 120
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
G L +LK L ++H + + + N TNLE L L + +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 82/226 (36%), Gaps = 39/226 (17%)
Query: 120 GGSGIPRIDGSKVLQSIGSLPSLKTLYLSHT--KFKGTVVNQKLHNFTNLEELILDESDL 177
GG+ +D LPSL+ L LS FKG +Q T+L+ LD S
Sbjct: 337 GGNAFSEVD----------LPSLEFLDLSRNGLSFKG-CCSQSDFGTTSLK--YLDLSFN 383
Query: 178 HVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTN----- 232
V + + L+HL Q LK FL +NL YLD+ V N
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 233 -----FLQIVGESMPXXXXXXXXXXXXXKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWC 287
L++ G S T LD CQL L P
Sbjct: 444 LSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLEQLS-------------PTA 489
Query: 288 LANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLP 333
+++SLQVL +SNQL L L+K+++ N S P
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 855 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 909
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 257 HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELV 316
TI D L HL L + N ++ + ++SLQ L A L + + L
Sbjct: 65 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
Query: 317 LLRKLYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 352
L++L + +N ++ LP +NLT+L LD+S N++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 526 NGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNL 585
+G P +F +K L L IS +LTG IP+ + +L L L +N++Q +
Sbjct: 162 SGFEPGAFDGLK-LNYLRISEAKLTG-IPKDLPE---TLNELHLDHNKIQAIELEDLLRY 216
Query: 586 TNLMTLQLDGNNFIGEIPE-SLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNN 644
+ L L L G+N I I SLS LR L+L DN+ ++P L +L LQ + + N
Sbjct: 217 SKLYRLGL-GHNQIRMIENGSLSFLPTLRELHL-DNNKLSRVPAGLPDLKLLQVVYLHTN 274
Query: 645 NLEGPIPIEFC 655
N+ +FC
Sbjct: 275 NITKVGVNDFC 285
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 40/238 (16%)
Query: 596 NNFIGEIPE-SLSKCYMLRGLYLSDNHL--------------------FGKIPRWL-GNL 633
NN I +I E + S L+ LY+S NHL K+P+ + L
Sbjct: 87 NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGL 146
Query: 634 PTLQYIIMPNNNLE--GPIPIEFCQRDSLKI--LDLSNNSIFGTLPSCFSPASIEQVHLS 689
+ I M N LE G P F D LK+ L +S + G +P P ++ ++HL
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAF---DGLKLNYLRISEAKLTG-IPKDL-PETLNELHLD 201
Query: 690 KNKIEG-RLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ 748
NKI+ LE ++ + L L L +N + + LP L L L +N + +P
Sbjct: 202 HNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAG 259
Query: 749 LCQLKEVRLIDLSHNNLS--GRIPPCLVNTSLNEGYHGEVA----PTSIWCRRASVYR 800
L LK ++++ L NN++ G C V + Y+ ++ P W + + +R
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
LP + +L VL S N+LT L L L++LY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 344 VLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
L ++ NQLTE + + L L +++ L+L N + IP
Sbjct: 152 KLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 315 LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSN 374
L +L L + +N L+ SLPL L +L VLDVS+N+LT ++ +L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 375 NHFFQIPIS-LEPLFNLSKLQTFN 397
N +P L P L KL N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLAN 157
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
LP + +L VL S N+LT L L L++LY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 344 VLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
L ++ N LTE + + L L +++ L+L N + IP
Sbjct: 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 315 LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSN 374
L +L L + +N L+ SLPL L +L VLDVS+N+LT ++ +L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 375 NHFFQIPIS-LEPLFNLSKLQTFN 397
N +P L P L KL N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLAN 157
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
LP + +L VL S N+LT L L L++LY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 344 VLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
L ++ N LTE + + L L +++ L+L N + IP
Sbjct: 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 315 LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSN 374
L +L L + +N L+ SLPL L +L VLDVS+N+LT ++ +L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 375 NHFFQIPIS-LEPLFNLSKLQTFNGEI 400
N +P L P L KL N +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
LP + +L VL S N+LT L L L++LY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 344 VLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
L ++ N LTE + + L L +++ L+L N + IP
Sbjct: 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 43/221 (19%)
Query: 538 MLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNN 597
+LE L +SNNQL ++PE + F L+I+ + NN L+ +L + GNN
Sbjct: 132 LLEYLGVSNNQLE-KLPE-LQNSSF-LKIIDVDNNSLKKLP-----DLPPSLEFIAAGNN 183
Query: 598 FIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLP-TLQYIIMPNNNLEGPIPIEFCQ 656
+ E+PE L L +Y +DN+ K+P +LP +L+ I+ NN LE E +
Sbjct: 184 QLEELPE-LQNLPFLTAIY-ADNNSLKKLP----DLPLSLESIVAGNNILE-----ELPE 232
Query: 657 RDSLKILDL--SNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVT-LDLS 713
+L L ++N++ TLP P S+E +++ N + + + + P +T LD+S
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYL-----TDLPELPQSLTFLDVS 285
Query: 714 YNSLHG--SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL 752
N G +P P L YL + N I+ LC L
Sbjct: 286 ENIFSGLSELP------PNLYYLNASSNEIRS-----LCDL 315
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 134/318 (42%), Gaps = 80/318 (25%)
Query: 488 QKLATLDVFNNFFQGHIPVEIGTYLPGLME-LNLSRNAFNGSIPSSFADMKMLERLDISN 546
Q L +L V NN + + LP L+E L +S N +P + L+ +D+ N
Sbjct: 111 QSLKSLLVDNNNLKA------LSDLPPLLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDN 162
Query: 547 NQLTGEIPERMATGCFSLEILALSNNRLQ-----------GHIFSEKFNLTNLMTLQLD- 594
N L +++ SLE +A NN+L+ I+++ +L L L L
Sbjct: 163 NSL-----KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL 217
Query: 595 -----GNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGP 649
GNN + E+PE L L +Y +DN+L +P P+L+ + + +N L
Sbjct: 218 ESIVAGNNILEELPE-LQNLPFLTTIY-ADNNLLKTLPDLP---PSLEALNVRDNYLTD- 271
Query: 650 IPIEFCQRDSLKILDLSNNSIFG--TLPS---------------CFSPASIEQVHLSKNK 692
+P E Q SL LD+S N G LP C P S+E++++S NK
Sbjct: 272 LP-ELPQ--SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328
Query: 693 ------IEGRLESIIHDNPHLVT----------LDLSYNSLH--GSIPNRIDRLPQLNYL 734
+ RLE +I HL L + YN L IP ++ L ++N
Sbjct: 329 LIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDL-RMN-- 385
Query: 735 LLAHNYIKGEIPVQLCQL 752
+H E+P L QL
Sbjct: 386 --SHLAEVPELPQNLKQL 401
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 130/316 (41%), Gaps = 41/316 (12%)
Query: 76 GSIDIKGLN-----SLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGS 130
G IK LN S +LEEL++ N I + V P F L L TL L + + I
Sbjct: 40 GKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIP-- 96
Query: 131 KVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDL-HVSQLLQSIASF 189
L L +L L +S K +++ + NL+ L + ++DL ++S ++ +
Sbjct: 97 --LGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGL 151
Query: 190 TSLKHLSMQDCVLKGA-------LHGQDFLKFKNL---EYLDMGWVQVDVNTNFLQIVGE 239
SL+ L+++ C L LHG L+ ++L D + ++ L+I
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL-YRLKVLEI--S 208
Query: 240 SMPXXXXXXXXXXXXXKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYA 299
P T L C L + L +R ++ L+ L
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR-------------HLVYLRFLNL 255
Query: 300 SSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSS 359
S N ++ L EL+ L+++ + L P L LRVL+VS NQLT + S
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEES 314
Query: 360 SLMHLTSIEELILSNN 375
+ ++E LIL +N
Sbjct: 315 VFHSVGNLETLILDSN 330
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 4/169 (2%)
Query: 269 HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDL 328
HL+ L + +N + P N+ +L+ L SN+L L L KL I N +
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 329 RGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI-SLEPL 387
L +L +L+ L+V N L IS + L S+E+L L + IP +L L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Query: 388 FNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLY 436
L L+ + INA + + L + ++ IS Y+D T P LY
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMT-PNCLY 222
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 504 IPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFS 563
IP+ + T L L +L++S N + F D+ L+ L++ +N L I R +G S
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNS 153
Query: 564 LEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLS 618
LE L L L +L L+ L+L N S + Y L+ L +S
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
LP + +L VL S N+LT L L L++LY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 344 VLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
L ++ N LTE + + L L +++ L+L N + IP
Sbjct: 152 KLSLANNDLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 489 KLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSS-FADMKMLERLDISNN 547
+L TL + NN +P+ + +L L +L L N S+PS F + L+ L ++ N
Sbjct: 84 ELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141
Query: 548 QLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLS 607
QL IP +L+ L+LS N+LQ L L T+ L GN F
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF--------- 191
Query: 608 KCYMLRGLYLS 618
C LYLS
Sbjct: 192 DCSRCETLYLS 202
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 290 NMTSLQVLYASSNQLTGNISPGLCE-LVLLRKLYIDNNDLRGSLPLCLAN-LTSLRVLDV 347
++T L L ++NQL ++ G+ + L L KLY+ N L+ SLP + + LT L+ L +
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 348 SYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTF 396
+ NQL ++I + + LT+++ L LS N +P L KLQT
Sbjct: 139 NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHG--AFDRLGKLQTI 184
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 489 KLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSS-FADMKMLERLDISNN 547
+L TL + NN +P+ + +L L +L L N S+PS F + L+ L ++ N
Sbjct: 84 ELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141
Query: 548 QLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLS 607
QL IP +L+ L+LS N+LQ L L T+ L GN F S
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF------DCS 194
Query: 608 KCYMLRGLYLS 618
+C + LYLS
Sbjct: 195 RCEI---LYLS 202
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 290 NMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLAN-LTSLRVLDVS 348
++T L L ++NQL L L KLY+ N L+ SLP + + LT L+ L ++
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN 139
Query: 349 YNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTF 396
NQL ++I + + LT+++ L LS N +P L KLQT
Sbjct: 140 TNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHG--AFDRLGKLQTI 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
LP + +L VL S N+LT L L L++LY+ N+L+ P L L
Sbjct: 93 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 344 VLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
L ++ N LTE + + L L +++ L+L N + IP
Sbjct: 153 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 189
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
LP + +L VL S N+LT L L L++LY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 344 VLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
L ++ N LTE + + L L +++ L+L N + IP
Sbjct: 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 851 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLE 910
+P ++ + ++LS+N ++ +FSN+ Q+ +L LSYN L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 911 VFKVAYNNLSGKIPDRA--QFSTFEEDSYEGNPFLC 944
+ + N++S +P+ A S + NP C
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 556 RMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGL 615
R T C L+ + +N+ G K ++ L LDGN F +P+ LS L +
Sbjct: 3 RCPTECTCLDTVVRCSNK--GLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLI 59
Query: 616 YLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
LS+N + + N+ L +I+ N L P F SL++L L N I
Sbjct: 60 DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 663 LDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSI 721
LDL NS+ F S+ Q++L NK++ + + L L+LS N L S+
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91
Query: 722 PNRI-DRLPQLNYLLLAHNYIKG---EIPVQLCQLKEVRL 757
PN + D+L QL L L N ++ + +L QLK++RL
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR 573
GL L L+RN ++P+S A + L L I E+PE +A+ S
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS---------- 176
Query: 574 LQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNL 633
E L NL +L+L+ I +P S++ L+ L + ++ L P + +L
Sbjct: 177 ------GEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHL 228
Query: 634 PTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLP 675
P L+ + + P F R LK L L + S TLP
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 841 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 20 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLE 75
Query: 901 PQLI-VLNTLEVFKVAYNNLS 920
P+L L L+V + +N LS
Sbjct: 76 PELCQKLPMLKVLNLQHNELS 96
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 107/276 (38%), Gaps = 35/276 (12%)
Query: 518 LNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGH 577
LNL+ N ++F L LD+ N ++ PE + L++L L +N L
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 97
Query: 578 IFSEKFNL-TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTL 636
+ + F TNL L L N+ K L L LS N L L L
Sbjct: 98 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 157
Query: 637 QYIIMPNNNLEG--PIPIEFCQRDSLKILDLSNNSIFGTLPSCF---------------- 678
Q +++ NN ++ ++ SLK L+LS+N I P CF
Sbjct: 158 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 217
Query: 679 SPASIEQVHLSKNKIEGRLESIIHDN--------------PHLVTLDLSYNSLHGSIPNR 724
P+ E++ L R S+ + +L LDLSYN+L+ +
Sbjct: 218 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 277
Query: 725 IDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 760
LPQL Y L +N I+ L L VR ++L
Sbjct: 278 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 313
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 112/270 (41%), Gaps = 39/270 (14%)
Query: 680 PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739
P +I ++L+ N++ + L +LD+ +N++ P +LP L L L HN
Sbjct: 34 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 93
Query: 740 YIK--GEIPVQLC-QLKEVRL---------------------IDLSHNNLSGRIPPCLVN 775
+ + C L E+ L +DLSHN LS +
Sbjct: 94 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS----TKLG 149
Query: 776 TSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMS---YYYQGR 832
T + E+ ++ + +S L ++ + K E K S ++ GR
Sbjct: 150 TQVQLENLQELLLSN---NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 206
Query: 833 IL-TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLK--QIESLD 889
+ ++ + L + LT ++ ++ T I L+LS++ L+ T TTF LK + LD
Sbjct: 207 LFGLFLNNVQLGPS-LTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 264
Query: 890 LSYNLLHGKIPPQLIVLNTLEVFKVAYNNL 919
LSYN L+ L LE F + YNN+
Sbjct: 265 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 39/202 (19%)
Query: 512 LPGLMELNLSRNAFNG--SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILAL 569
+P L L L R A S PS F ++ L LD+SNN + + M G LEIL L
Sbjct: 463 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDL 521
Query: 570 SNNRLQ---------GHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
+N L G I+ K L++L L L+ N F EIP + K
Sbjct: 522 QHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGF-DEIPVEVFK------------ 567
Query: 621 HLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP 680
+L L+ I + NNL F + SLK L+L N I F P
Sbjct: 568 -----------DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 616
Query: 681 A--SIEQVHLSKNKIEGRLESI 700
A ++ ++ + N + ESI
Sbjct: 617 AFRNLTELDMRFNPFDCTCESI 638
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 270 LQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLC-ELV--LLRKLYIDNN 326
L+ L + N +++ P C + L L+ ++ QL +++ LC EL +R L + N+
Sbjct: 183 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 242
Query: 327 DLRGSLPLCLANL--TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNN---HFFQIP 381
L + L T+L +LD+SYN L + + S L +E L N H F
Sbjct: 243 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFS-- 299
Query: 382 ISLEPLFNLSKL 393
SL LFN+ L
Sbjct: 300 HSLHGLFNVRYL 311
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 841 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 15 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLE 70
Query: 901 PQLI-VLNTLEVFKVAYNNLS 920
P+L L L+V + +N LS
Sbjct: 71 PELCQKLPMLKVLNLQHNELS 91
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 107/276 (38%), Gaps = 35/276 (12%)
Query: 518 LNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGH 577
LNL+ N ++F L LD+ N ++ PE + L++L L +N L
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 92
Query: 578 IFSEKFNL-TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTL 636
+ + F TNL L L N+ K L L LS N L L L
Sbjct: 93 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 152
Query: 637 QYIIMPNNNLEG--PIPIEFCQRDSLKILDLSNNSIFGTLPSCF---------------- 678
Q +++ NN ++ ++ SLK L+LS+N I P CF
Sbjct: 153 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 212
Query: 679 SPASIEQVHLSKNKIEGRLESIIHDN--------------PHLVTLDLSYNSLHGSIPNR 724
P+ E++ L R S+ + +L LDLSYN+L+ +
Sbjct: 213 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 272
Query: 725 IDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 760
LPQL Y L +N I+ L L VR ++L
Sbjct: 273 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 308
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 112/270 (41%), Gaps = 39/270 (14%)
Query: 680 PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739
P +I ++L+ N++ + L +LD+ +N++ P +LP L L L HN
Sbjct: 29 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 88
Query: 740 YIK--GEIPVQLC-QLKEVRL---------------------IDLSHNNLSGRIPPCLVN 775
+ + C L E+ L +DLSHN LS +
Sbjct: 89 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS----TKLG 144
Query: 776 TSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMS---YYYQGR 832
T + E+ ++ + +S L ++ + K E K S ++ GR
Sbjct: 145 TQVQLENLQELLLSN---NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 201
Query: 833 IL-TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLK--QIESLD 889
+ ++ + L + LT ++ ++ T I L+LS++ L+ T TTF LK + LD
Sbjct: 202 LFGLFLNNVQLGPS-LTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 259
Query: 890 LSYNLLHGKIPPQLIVLNTLEVFKVAYNNL 919
LSYN L+ L LE F + YNN+
Sbjct: 260 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 39/202 (19%)
Query: 512 LPGLMELNLSRNAFNG--SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILAL 569
+P L L L R A S PS F ++ L LD+SNN + + M G LEIL L
Sbjct: 458 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDL 516
Query: 570 SNNRLQ---------GHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
+N L G I+ K L++L L L+ N F EIP + K
Sbjct: 517 QHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGF-DEIPVEVFK------------ 562
Query: 621 HLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP 680
+L L+ I + NNL F + SLK L+L N I F P
Sbjct: 563 -----------DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 611
Query: 681 A--SIEQVHLSKNKIEGRLESI 700
A ++ ++ + N + ESI
Sbjct: 612 AFRNLTELDMRFNPFDCTCESI 633
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 270 LQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLC-ELV--LLRKLYIDNN 326
L+ L + N +++ P C + L L+ ++ QL +++ LC EL +R L + N+
Sbjct: 178 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 237
Query: 327 DLRGSLPLCLANL--TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNN---HFFQIP 381
L + L T+L +LD+SYN L + + S L +E L N H F
Sbjct: 238 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFS-- 294
Query: 382 ISLEPLFNLSKL 393
SL LFN+ L
Sbjct: 295 HSLHGLFNVRYL 306
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 841 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLE 65
Query: 901 PQLI-VLNTLEVFKVAYNNLS 920
P+L L L+V + +N LS
Sbjct: 66 PELCQKLPMLKVLNLQHNELS 86
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 107/276 (38%), Gaps = 35/276 (12%)
Query: 518 LNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGH 577
LNL+ N ++F L LD+ N ++ PE + L++L L +N L
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 87
Query: 578 IFSEKFNL-TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTL 636
+ + F TNL L L N+ K L L LS N L L L
Sbjct: 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147
Query: 637 QYIIMPNNNLEG--PIPIEFCQRDSLKILDLSNNSIFGTLPSCF---------------- 678
Q +++ NN ++ ++ SLK L+LS+N I P CF
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 679 SPASIEQVHLSKNKIEGRLESIIHDN--------------PHLVTLDLSYNSLHGSIPNR 724
P+ E++ L R S+ + +L LDLSYN+L+ +
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 725 IDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 760
LPQL Y L +N I+ L L VR ++L
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 112/270 (41%), Gaps = 39/270 (14%)
Query: 680 PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739
P +I ++L+ N++ + L +LD+ +N++ P +LP L L L HN
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 740 YIK--GEIPVQLC-QLKEVRL---------------------IDLSHNNLSGRIPPCLVN 775
+ + C L E+ L +DLSHN LS +
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS----TKLG 139
Query: 776 TSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMS---YYYQGR 832
T + E+ ++ + +S L ++ + K E K S ++ GR
Sbjct: 140 TQVQLENLQELLLSN---NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196
Query: 833 IL-TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLK--QIESLD 889
+ ++ + L + LT ++ ++ T I L+LS++ L+ T TTF LK + LD
Sbjct: 197 LFGLFLNNVQLGPS-LTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254
Query: 890 LSYNLLHGKIPPQLIVLNTLEVFKVAYNNL 919
LSYN L+ L LE F + YNN+
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 39/202 (19%)
Query: 512 LPGLMELNLSRNAFNG--SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILAL 569
+P L L L R A S PS F ++ L LD+SNN + + M G LEIL L
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDL 511
Query: 570 SNNRLQ---------GHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
+N L G I+ K L++L L L+ N F EIP + K
Sbjct: 512 QHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGF-DEIPVEVFK------------ 557
Query: 621 HLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP 680
+L L+ I + NNL F + SLK L+L N I F P
Sbjct: 558 -----------DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Query: 681 A--SIEQVHLSKNKIEGRLESI 700
A ++ ++ + N + ESI
Sbjct: 607 AFRNLTELDMRFNPFDCTCESI 628
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 861 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL 919
+ L+L+H +LT + L + LDLS+N L +PP L L LEV + + N L
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 588 LMTLQLD-GNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNL 646
L+ LD +N + +P +L+ L L SDN L + NLP LQ +++ NN L
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL 520
Query: 647 EGPI---PIEFCQRDSLKILDLSNNSI 670
+ P+ C R L +L+L NS+
Sbjct: 521 QQSAAIQPLVSCPR--LVLLNLQGNSL 545
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 861 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL 919
+ L+L+H +LT + L + LDLS+N L +PP L L LEV + + N L
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 588 LMTLQLD-GNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNL 646
L+ LD +N + +P +L+ L L SDN L + NLP LQ +++ NN L
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL 520
Query: 647 EGPI---PIEFCQRDSLKILDLSNNSI 670
+ P+ C R L +L+L NS+
Sbjct: 521 QQSAAIQPLVSCPR--LVLLNLQGNSL 545
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 889 DLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEG---NPFLCG 945
D++Y ++ + + LN L +++V + L+ +P R++ + F+ ++G + G
Sbjct: 350 DVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVP-RSRIADFDRGVFKGILQGTDIVG 408
Query: 946 Q----PLSKSCNDNGLTTVTP 962
Q PL+KS D+G++ TP
Sbjct: 409 QLIVYPLNKSMWDDGMSAATP 429
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 29/196 (14%)
Query: 167 LEELILDESDLHVSQLLQSIASFTSLKHLSMQDC----------VLKGALHGQDFLKFKN 216
++++I + SD+ Q +Q + + TSL + Q V K L+G K
Sbjct: 46 IDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKP 105
Query: 217 LEYL-DMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXXXKHTILD-QGLCQLVHLQGLY 274
L L ++GW+ +D N V + + I D GL L L+ LY
Sbjct: 106 LANLKNLGWLFLDENK-----VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 160
Query: 275 IRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNN---DLRGS 331
+ +N + D L+ +T L L NQ++ +I P L L L+ LY+ N DLR
Sbjct: 161 LGNNKITDIT--VLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLR-- 214
Query: 332 LPLCLANLTSLRVLDV 347
LA L +L VL++
Sbjct: 215 ---ALAGLKNLDVLEL 227
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 30/145 (20%)
Query: 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTG-NISPGLCELVLLRKL 321
G+ +L+ L++ N + D P L ++T L+ L + N+L N P C L +L
Sbjct: 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC----LSRL 111
Query: 322 YIDNNDLRGSLPLC--------------------LANLTSLRVLDVSYNQLTENISSSSL 361
++DNN+LR + L L L+ L VLD+ N++T ++ L
Sbjct: 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT---NTGGL 168
Query: 362 MHLTSIEELILSNNHFFQIPISLEP 386
L + + L+ P+ +P
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQP 193
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 630 LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHL 688
L L L Y+I+ N L+ F + +LK L L N + F ++ ++L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 689 SKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIK 742
+ N+++ + + +L LDLSYN L D+L QL L L N +K
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 18/192 (9%)
Query: 190 TSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXX 249
+LK S+ D V + L+ D + N + + +Q N +L + G +
Sbjct: 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL-------- 75
Query: 250 XXXXXXKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNIS 309
H I L +L +L L + N L+ +T+L+ L NQL
Sbjct: 76 -------HDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 310 PGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEE 369
+L L L + +N L+ LT+L LD+SYNQL +++ LT +++
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKD 185
Query: 370 LILSNNHFFQIP 381
L L N +P
Sbjct: 186 LRLYQNQLKSVP 197
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 858 LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN 917
LT + LNL+HN L F L + LDLSYN L L L+ ++ N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 918 NLSGKIPDRA--QFSTFEEDSYEGNPFLCGQP 947
L +PD + ++ + NP+ C P
Sbjct: 192 QLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 14/151 (9%)
Query: 567 LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKI 626
LAL N+L H S LTNL L L GN K L+ L L +N L
Sbjct: 68 LALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 627 PRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQ 685
L L Y+ + +N L+ F + +L LDLS N + F ++
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 686 VHLSKNKIEG-------RLESI----IHDNP 705
+ L +N+++ RL S+ +HDNP
Sbjct: 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 490 LATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPS-SFADMKMLERLDISNNQ 548
L TL++F+N IP YL L EL L N SIPS +F + L RLD+ +
Sbjct: 114 LNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171
Query: 549 LTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMT---LQLDGNNFIGEIPES 605
I E G +L L L+ L+ E NLT L+ L L GN+ P S
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLR-----EIPNLTPLIKLDELDLSGNHLSAIRPGS 226
Query: 606 LSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNL 646
L+ L++ + + NL +L I + +NNL
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 266 QLVHLQGLYIRDNDLRD---GLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
L HL+ L + N +R G LAN+ +L++ N+LT + L L++L+
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF---DNRLTTIPNGAFVYLSKLKELW 142
Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSS---------------------- 360
+ NN + + SLR LD+ + IS +
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
Query: 361 LMHLTSIEELILSNNHFFQI-PISLEPLFNLSKLQTFNGEINAQTESHYDSL 411
L L ++EL LS NH I P S + L +L KL +I + +D+L
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
+I L L L+ELD++GN + + + P F+GL L L++ S I I+ + + +
Sbjct: 199 EIPNLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERN----AFDN 253
Query: 139 LPSLKTLYLSH 149
L SL + L+H
Sbjct: 254 LQSLVEINLAH 264
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 705 PHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNN 764
PHLV L+L N L G PN + + L L N IK L +++ ++L N
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 765 LSGRIP 770
+S +P
Sbjct: 114 ISCVMP 119
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 528 SIPSS-FADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLT 586
S+P+ F + L+ L + NQL +P+ + +L L L +N+LQ LT
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLT 157
Query: 587 NLMTLQLDGNNFIGEIPESL-SKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNN 644
NL L LD NN + +PE + K L+ L L+DN L L +L +I + NN
Sbjct: 158 NLTRLDLD-NNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN 325
+L +L+ L + +N L+ +T+L LY NQL +L L +L +DN
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 326 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
N L+ LT L+ L ++ NQL +++ LTS+ + L NN +
Sbjct: 167 NQLQSLPEGVFDKLTQLKQLSLNDNQL-KSVPDGVFDRLTSLTHIWLLNNPW 217
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 567 LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKI 626
LAL N+L H S LTNL L L GN K L+ L L +N L
Sbjct: 68 LALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 627 PRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQ 685
L L Y+ + +N L+ F + +L LDL NN + F ++Q
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Query: 686 VHLSKNKIEG-------RLESIIH 702
+ L+ N+++ RL S+ H
Sbjct: 186 LSLNDNQLKSVPDGVFDRLTSLTH 209
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 79 DIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTLYLGGSGIPRI-DGSKVLQSI 136
DI L L+NL L +TGN +++L P F L L L L + + + DG
Sbjct: 77 DISALKELTNLTYLILTGNQLQSL--PNGVFDKLTNLKELVLVENQLQSLPDG-----VF 129
Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSI-ASFTSLKHL 195
L +L LYL H + + ++ TNL L LD + L L + + T LK L
Sbjct: 130 DKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQ--SLPEGVFDKLTQLKQL 186
Query: 196 SMQDCVLKGALHG 208
S+ D LK G
Sbjct: 187 SLNDNQLKSVPDG 199
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 895
++ +DLS N++T + + + AL L+ N + +FS+L +E LDLSYN L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 895
++ +DLS N++T + + + AL L+ N + +FS+L +E LDLSYN L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 862 HALNLSHNNLTGTIPTTFSNL---KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNN 918
H+L+LSHN+L T+ + + SL+LS+ L ++P L L V ++ N
Sbjct: 227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPA--KLRVLDLSSNR 283
Query: 919 LSGKIPDRAQFSTFEEDSYEGNPFL 943
L+ + P + + + +GNPFL
Sbjct: 284 LN-RAPQPDELPEVDNLTLDGNPFL 307
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 7/168 (4%)
Query: 493 LDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFN--GSIPSSFADMKMLERLDISNNQLT 550
LD NN + G +L L L L N I MK L++LDIS N ++
Sbjct: 329 LDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 551 GEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCY 610
+ + + SL L +S+N L IF + + L L N I IP+ + K
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNK-IKSIPKQVVKLE 444
Query: 611 MLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIP-IEFCQR 657
L+ L ++ N L L +LQ I + N + P I++ R
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 492
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 11/216 (5%)
Query: 680 PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYN--SLHGSIPNRIDRLPQLNYLLLA 737
P+S ++ L NK++ + L L LS N S G L YL L+
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 738 HNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRAS 797
N + + L+++ +D H+NL ++ V SL + +++ T
Sbjct: 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT-----HTR 139
Query: 798 VYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY 857
V + G SS + K F + + L +++ +DLS +L PT
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 858 LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
L+ + LN+SHNN + L ++ LD S N
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 510 TYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILAL 569
T L L L LS N N +F + L LD+S+N L + E + + +LE+L L
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLL 119
Query: 570 SNNRL---QGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL---- 622
NN + + F + L L Q + F E+ + +K L L LS N L
Sbjct: 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Query: 623 ---FGKIPRWLGN 632
K+P W+ N
Sbjct: 180 LTDLQKLPAWVKN 192
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 30/150 (20%)
Query: 585 LTNLMTLQLDGN--NFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMP 642
LTNL +L L N NFI E+ LR L LS NHL +L L+ +++
Sbjct: 63 LTNLHSLLLSHNHLNFISS--EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120
Query: 643 NNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIH 702
NN+ I R++ + + A +++++LS+N+I +I
Sbjct: 121 NNH------IVVVDRNAFEDM-----------------AQLQKLYLSQNQISRFPVELIK 157
Query: 703 DN---PHLVTLDLSYNSLHGSIPNRIDRLP 729
D P L+ LDLS N L + +LP
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 840 IDLSCN---KLTGE-IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 895
+DLS N +L E PT+ LT +H+L LSHN+L F + + LDLS N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTR---LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 896 HGKIPPQLIVLNTLEVFKVAYNN 918
H L LEV + YNN
Sbjct: 101 HTLDEFLFSDLQALEVL-LLYNN 122
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 15 LDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXADNRL 74
LDLS NN++ + +RLTNL L L+ NH N + N L
Sbjct: 44 LDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 75 NGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTLYLGGSGIPRIDGSKVL 133
+ ++D + L LE L + N I +VV ++ F + +L LYL + I R +++
Sbjct: 101 H-TLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQISRF-PVELI 156
Query: 134 QSIGSLPSLKTLYLSHTKFK 153
+ LP L L LS K K
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK 176
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 292 TSLQVLYASSNQLTGNISPGLCE-LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYN 350
T Q L+ ++NQ+T + PG+ + LV L++LY ++N L LT L LD++ N
Sbjct: 33 TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
Query: 351 QLTENISSSSLMHLTSIEELILSNNHF 377
L ++I + +L S+ + L NN +
Sbjct: 92 HL-KSIPRGAFDNLKSLTHIYLYNNPW 117
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 842 LSC--NKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL-KQIESLDLSYNLLH 896
L C N+L G++P G ++ +LNL++N +T IP F +Q+E+L ++N L
Sbjct: 335 LECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 30/90 (33%)
Query: 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXAD 71
LE L +S+N IA SL + +L NL+ LY+++N N
Sbjct: 96 LEELWISYNQIA------SLSGIEKLVNLRVLYMSNNKITNW------------------ 131
Query: 72 NRLNGSIDIKGLNSLSNLEELDMTGNAIEN 101
G ID L +L LE+L + GN + N
Sbjct: 132 ----GEID--KLAALDKLEDLLLAGNPLYN 155
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 30/90 (33%)
Query: 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFXXXXXXXXXXXXXXAD 71
LE L +S+N IA SL + +L NL+ LY+++N N
Sbjct: 95 LEELWISYNQIA------SLSGIEKLVNLRVLYMSNNKITNW------------------ 130
Query: 72 NRLNGSIDIKGLNSLSNLEELDMTGNAIEN 101
G ID L +L LE+L + GN + N
Sbjct: 131 ----GEID--KLAALDKLEDLLLAGNPLYN 154
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 840 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 899
+DLS N L+ + T++ LNLS N L T+ +L + +LDL+ N +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ--- 93
Query: 900 PPQLIVLNTLEVFKVAYNNLSGKIPDRAQ 928
+L+V ++E A NN+S R Q
Sbjct: 94 --ELLVGPSIETLHAANNNISRVSCSRGQ 120
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 564 LEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLF 623
LE L L NN++ + LT L TL L+ N +P L++ L+ LYLS NH+
Sbjct: 134 LESLYLGNNKITDITVLSR--LTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHIS 189
Query: 624 G-KIPRWLGNLPTLQ 637
+ R L NL L+
Sbjct: 190 DLRALRGLKNLDVLE 204
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 840 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 899
+DLS N L+ + T++ LNLS N L T+ +L + +LDL+ N +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ--- 93
Query: 900 PPQLIVLNTLEVFKVAYNNLSGKIPDRAQ 928
+L+V ++E A NN+S R Q
Sbjct: 94 --ELLVGPSIETLHAANNNISRVSCSRGQ 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,669,875
Number of Sequences: 62578
Number of extensions: 1145010
Number of successful extensions: 3498
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2158
Number of HSP's gapped (non-prelim): 870
length of query: 1037
length of database: 14,973,337
effective HSP length: 109
effective length of query: 928
effective length of database: 8,152,335
effective search space: 7565366880
effective search space used: 7565366880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)