Query 001653
Match_columns 1037
No_of_seqs 779 out of 5199
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:06:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.6E-63 7.7E-68 629.2 45.0 541 292-947 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-57 4.3E-62 576.7 40.6 535 268-918 69-605 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.3E-38 1.4E-42 330.8 6.8 367 294-740 80-450 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 1.1E-39 2.4E-44 329.5 -12.6 476 268-896 45-541 (565)
5 KOG0472 Leucine-rich repeat pr 100.0 2.2E-40 4.8E-45 334.5 -18.1 476 291-920 44-541 (565)
6 KOG4194 Membrane glycoprotein 100.0 1.3E-36 2.9E-41 320.8 7.0 362 416-781 79-444 (873)
7 KOG0618 Serine/threonine phosp 100.0 1.4E-35 3.1E-40 330.5 -4.5 498 258-917 11-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1E-34 2.2E-39 323.7 -4.7 381 431-919 106-488 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.2E-32 6.9E-37 289.2 -3.9 357 493-918 12-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6.3E-32 1.4E-36 286.9 -2.2 393 416-925 8-409 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.4E-28 3.1E-33 249.3 -3.5 395 490-917 69-498 (498)
12 KOG4237 Extracellular matrix p 99.9 3.1E-26 6.7E-31 232.5 -3.4 393 493-921 51-478 (498)
13 PLN03210 Resistant to P. syrin 99.9 3.5E-22 7.5E-27 253.4 26.7 318 503-894 579-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 8.5E-22 1.8E-26 249.8 28.2 341 504-918 549-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 1.1E-21 2.4E-26 228.9 17.7 266 514-905 202-467 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 4.8E-21 1E-25 223.7 18.7 269 488-883 201-469 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2E-19 4.4E-24 212.0 12.6 118 514-647 179-296 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4E-19 8.7E-24 209.5 11.9 182 488-694 178-359 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1E-18 2.2E-23 193.3 2.0 105 566-670 2-120 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-18 5E-23 190.5 2.6 212 517-766 2-234 (319)
21 KOG0617 Ras suppressor protein 99.7 1.4E-18 3.1E-23 156.3 -4.6 188 673-924 25-216 (264)
22 PLN03150 hypothetical protein; 99.7 4.8E-16 1E-20 183.7 13.3 118 836-953 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 4.8E-18 1.1E-22 152.9 -5.1 180 701-943 29-212 (264)
24 PLN03150 hypothetical protein; 99.3 1.8E-12 4E-17 153.4 9.1 114 754-925 419-533 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 4.8E-13 1E-17 143.6 -3.4 102 660-765 77-178 (722)
26 COG4886 Leucine-rich repeat (L 99.2 3.5E-11 7.6E-16 136.9 7.8 122 638-763 97-219 (394)
27 COG4886 Leucine-rich repeat (L 99.2 6.1E-11 1.3E-15 134.9 8.6 199 661-925 96-295 (394)
28 KOG1909 Ran GTPase-activating 99.1 1.4E-11 3E-16 125.3 1.7 195 6-200 26-251 (382)
29 KOG1909 Ran GTPase-activating 99.1 1.1E-11 2.4E-16 125.9 1.0 203 160-377 87-310 (382)
30 KOG0532 Leucine-rich repeat (L 99.1 5.2E-12 1.1E-16 135.7 -3.1 214 541-764 54-271 (722)
31 PF14580 LRR_9: Leucine-rich r 99.1 8.8E-11 1.9E-15 112.9 3.6 131 34-174 15-149 (175)
32 KOG3207 Beta-tubulin folding c 99.0 4.7E-11 1E-15 124.7 0.7 216 35-256 118-340 (505)
33 KOG1259 Nischarin, modulator o 99.0 9.8E-11 2.1E-15 115.8 2.1 85 836-923 330-415 (490)
34 KOG3207 Beta-tubulin folding c 99.0 1.3E-10 2.9E-15 121.4 3.0 116 84-201 118-233 (505)
35 PF14580 LRR_9: Leucine-rich r 99.0 2.9E-10 6.3E-15 109.3 4.5 105 37-146 41-146 (175)
36 KOG1259 Nischarin, modulator o 98.8 7E-10 1.5E-14 109.9 1.0 133 263-403 279-411 (490)
37 PF13855 LRR_8: Leucine rich r 98.8 4.7E-09 1E-13 82.8 3.6 60 836-895 2-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.8 3.7E-09 7.9E-14 83.4 2.7 61 859-919 1-61 (61)
39 KOG2120 SCF ubiquitin ligase, 98.8 5.7E-10 1.2E-14 110.7 -2.8 110 87-200 185-296 (419)
40 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.5E-14 123.1 -1.4 225 630-924 91-322 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.7 2.3E-08 5E-13 121.0 8.0 151 9-172 522-675 (889)
42 KOG0531 Protein phosphatase 1, 98.6 3.8E-09 8.2E-14 120.1 -1.1 244 513-770 72-322 (414)
43 KOG4341 F-box protein containi 98.6 3E-09 6.6E-14 110.9 -1.7 236 63-303 139-383 (483)
44 KOG4658 Apoptotic ATPase [Sign 98.6 2E-08 4.4E-13 121.5 4.3 132 267-400 544-677 (889)
45 KOG2120 SCF ubiquitin ligase, 98.6 1.7E-09 3.7E-14 107.3 -4.2 159 39-200 186-348 (419)
46 COG5238 RNA1 Ran GTPase-activa 98.5 5.8E-08 1.3E-12 95.4 3.7 195 9-203 29-255 (388)
47 KOG2982 Uncharacterized conser 98.4 9E-08 1.9E-12 95.4 2.5 111 87-200 45-156 (418)
48 KOG2982 Uncharacterized conser 98.4 1E-07 2.3E-12 94.9 2.9 187 11-202 46-261 (418)
49 KOG4341 F-box protein containi 98.4 2.4E-08 5.1E-13 104.4 -2.7 264 39-305 139-414 (483)
50 KOG4579 Leucine-rich repeat (L 98.3 5.7E-08 1.2E-12 85.4 -1.6 58 837-896 79-136 (177)
51 KOG1859 Leucine-rich repeat pr 98.3 7.8E-09 1.7E-13 114.6 -8.9 116 258-378 177-292 (1096)
52 KOG1859 Leucine-rich repeat pr 98.3 2E-08 4.4E-13 111.4 -6.5 160 5-179 104-293 (1096)
53 COG5238 RNA1 Ran GTPase-activa 98.0 1.9E-06 4.2E-11 85.0 1.4 103 31-133 23-141 (388)
54 PF12799 LRR_4: Leucine Rich r 97.9 8.4E-06 1.8E-10 58.5 3.4 36 860-896 2-37 (44)
55 KOG4579 Leucine-rich repeat (L 97.9 5.6E-07 1.2E-11 79.3 -3.3 116 657-775 52-168 (177)
56 PF12799 LRR_4: Leucine Rich r 97.8 2.7E-05 5.8E-10 55.9 3.6 37 836-873 2-38 (44)
57 KOG3665 ZYG-1-like serine/thre 97.7 1.2E-05 2.7E-10 95.1 2.2 152 215-370 122-280 (699)
58 PRK15386 type III secretion pr 97.7 8.3E-05 1.8E-09 80.8 8.2 57 859-919 156-218 (426)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 3.8E-10 93.9 2.5 158 37-200 121-285 (699)
60 KOG1644 U2-associated snRNP A' 97.6 8E-05 1.7E-09 70.9 5.0 107 63-176 43-151 (233)
61 KOG1644 U2-associated snRNP A' 97.4 0.00018 4E-09 68.5 5.1 82 88-176 43-124 (233)
62 PRK15386 type III secretion pr 97.4 0.00047 1E-08 75.1 8.7 73 561-645 51-123 (426)
63 PF13306 LRR_5: Leucine rich r 97.3 0.00031 6.8E-09 65.5 5.7 55 512-569 11-65 (129)
64 PF13306 LRR_5: Leucine rich r 97.3 0.00042 9.1E-09 64.6 5.9 123 531-660 6-128 (129)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00018 4E-09 71.8 2.6 86 37-125 42-129 (260)
66 KOG2123 Uncharacterized conser 97.0 5.6E-05 1.2E-09 75.2 -2.9 103 60-171 17-123 (388)
67 KOG2739 Leucine-rich acidic nu 97.0 0.00032 6.9E-09 70.1 1.6 90 6-101 39-130 (260)
68 KOG1947 Leucine rich repeat pr 96.9 0.00032 6.9E-09 82.6 1.4 133 60-196 186-327 (482)
69 KOG1947 Leucine rich repeat pr 96.7 0.00029 6.2E-09 83.0 -1.3 16 134-149 208-223 (482)
70 KOG4308 LRR-containing protein 96.4 9E-05 1.9E-09 84.1 -7.8 191 12-203 89-303 (478)
71 KOG2123 Uncharacterized conser 96.3 0.00024 5.2E-09 70.9 -4.3 85 85-178 17-101 (388)
72 KOG4308 LRR-containing protein 96.0 0.00034 7.3E-09 79.5 -5.7 188 40-228 89-303 (478)
73 PF00560 LRR_1: Leucine Rich R 95.8 0.0039 8.5E-08 37.0 1.0 19 861-880 2-20 (22)
74 PF00560 LRR_1: Leucine Rich R 95.6 0.004 8.7E-08 37.0 0.3 21 884-905 1-21 (22)
75 KOG0473 Leucine-rich repeat pr 90.3 0.01 2.3E-07 58.0 -6.1 88 5-100 37-124 (326)
76 KOG0473 Leucine-rich repeat pr 89.9 0.017 3.7E-07 56.5 -5.0 82 836-920 43-124 (326)
77 smart00369 LRR_TYP Leucine-ric 88.7 0.33 7.2E-06 30.1 1.9 15 883-897 2-16 (26)
78 smart00370 LRR Leucine-rich re 88.7 0.33 7.2E-06 30.1 1.9 15 883-897 2-16 (26)
79 PF13516 LRR_6: Leucine Rich r 87.9 0.33 7E-06 29.5 1.4 22 859-880 2-23 (24)
80 PF13504 LRR_7: Leucine rich r 87.8 0.37 8E-06 26.4 1.4 13 538-550 2-14 (17)
81 smart00369 LRR_TYP Leucine-ric 87.6 0.47 1E-05 29.4 2.0 22 858-879 1-22 (26)
82 smart00370 LRR Leucine-rich re 87.6 0.47 1E-05 29.4 2.0 22 858-879 1-22 (26)
83 KOG3864 Uncharacterized conser 87.3 0.28 6.1E-06 47.5 1.4 34 190-223 151-184 (221)
84 KOG3864 Uncharacterized conser 85.4 0.24 5.1E-06 48.1 -0.3 87 111-201 100-187 (221)
85 PF08693 SKG6: Transmembrane a 78.6 2.9 6.4E-05 28.8 3.1 28 980-1007 12-39 (40)
86 smart00365 LRR_SD22 Leucine-ri 76.0 2.1 4.6E-05 26.5 1.7 15 882-896 1-15 (26)
87 KOG4242 Predicted myosin-I-bin 67.3 14 0.00031 41.0 6.7 61 269-329 414-481 (553)
88 TIGR00864 PCC polycystin catio 66.9 3.8 8.2E-05 55.5 2.7 36 889-924 1-36 (2740)
89 smart00368 LRR_RI Leucine rich 60.2 6.9 0.00015 24.7 1.7 14 10-23 2-15 (28)
90 smart00364 LRR_BAC Leucine-ric 58.1 5.6 0.00012 24.6 1.0 12 861-872 4-15 (26)
91 KOG4242 Predicted myosin-I-bin 38.2 94 0.002 34.9 7.0 288 10-305 165-481 (553)
92 PF08374 Protocadherin: Protoc 37.3 56 0.0012 32.3 4.7 28 977-1005 37-64 (221)
93 PHA03099 epidermal growth fact 34.3 13 0.00028 32.9 -0.0 32 982-1013 104-135 (139)
94 KOG3763 mRNA export factor TAP 33.0 21 0.00045 40.7 1.2 65 266-330 216-284 (585)
95 PF04478 Mid2: Mid2 like cell 27.6 35 0.00075 31.8 1.5 13 980-992 51-63 (154)
96 smart00367 LRR_CC Leucine-rich 27.2 43 0.00092 20.6 1.4 12 38-49 2-13 (26)
97 TIGR00864 PCC polycystin catio 25.1 41 0.00089 46.4 2.1 32 841-872 1-32 (2740)
98 KOG3763 mRNA export factor TAP 24.5 46 0.001 38.1 2.0 12 561-572 243-254 (585)
99 PF15102 TMEM154: TMEM154 prot 21.4 44 0.00096 30.9 1.0 16 991-1006 72-87 (146)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-63 Score=629.17 Aligned_cols=541 Identities=35% Similarity=0.506 Sum_probs=481.1
Q ss_pred CCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhcc-CCCCCCEEEccCCcCCcccChhhhcCCCCCCEE
Q 001653 292 TSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLA-NLTSLRVLDVSYNQLTENISSSSLMHLTSIEEL 370 (1037)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L 370 (1037)
.+++.|+|++|.+.+.++..|..+++|++|+|++|++.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence 4678888888888887777888888888888888888776776544 778888888888887765654 345667777
Q ss_pred EccCCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccceeEEEccccccCCCCchhhhcCCCCCEEEcCCCC
Q 001653 371 ILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLN 450 (1037)
Q Consensus 371 ~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~ 450 (1037)
++++|.+ .+.+|..+..+++|++|++++|.
T Consensus 146 ~Ls~n~~--------------------------------------------------~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 146 DLSNNML--------------------------------------------------SGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred ECcCCcc--------------------------------------------------cccCChHHhcCCCCCEEECccCc
Confidence 7766655 33356677778888888888888
Q ss_pred CcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCC
Q 001653 451 LSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIP 530 (1037)
Q Consensus 451 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 530 (1037)
+.+.+|..+ .++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|
T Consensus 176 l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 176 LVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred ccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccC
Confidence 888888775 67888888888888888888888888899999999999998888887765 7899999999999998999
Q ss_pred ccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCC
Q 001653 531 SSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCY 610 (1037)
Q Consensus 531 ~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 610 (1037)
..++++++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..++
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 332 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC
Confidence 9999999999999999999888888775 489999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCcccCCCCCC-cCccCeEEcc
Q 001653 611 MLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFS-PASIEQVHLS 689 (1037)
Q Consensus 611 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~L~ 689 (1037)
+|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..++.+.+|+.|++++|++.+.+|..+. +++|+.|+++
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 999999999999999999999999999999999999999999999999999999999999998888765 7899999999
Q ss_pred CccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcC
Q 001653 690 KNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRI 769 (1037)
Q Consensus 690 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~i 769 (1037)
+|.+++..|..+..+++|+.||+++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|+++|.+
T Consensus 413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAV 491 (968)
T ss_pred CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCcc
Confidence 999999999999999999999999999999999999999999999999999999888766 4589999999999999988
Q ss_pred CCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCccccccccccccccEEEccCCcccc
Q 001653 770 PPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG 849 (1037)
Q Consensus 770 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g 849 (1037)
|..+.++ +.|+.|||++|+++|
T Consensus 492 ~~~~~~l----------------------------------------------------------~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 492 PRKLGSL----------------------------------------------------------SELMQLKLSENKLSG 513 (968)
T ss_pred Chhhhhh----------------------------------------------------------hccCEEECcCCccee
Confidence 8766543 378899999999999
Q ss_pred cCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecCCCcceecCCCCCCC
Q 001653 850 EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQF 929 (1037)
Q Consensus 850 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~ip~~~~~ 929 (1037)
.+|..++.+++|++|+|++|.++|.+|..|+++++|+.|||++|+++|.+|..+..+++|+.+++++|+++|.+|+.++|
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCCCC
Q 001653 930 STFEEDSYEGNPFLCGQP 947 (1037)
Q Consensus 930 ~~~~~~~~~gNp~lc~~~ 947 (1037)
.++...++.|||++||.+
T Consensus 594 ~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 594 LAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccChhhhcCCccccCCc
Confidence 999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-57 Score=576.67 Aligned_cols=535 Identities=33% Similarity=0.479 Sum_probs=430.9
Q ss_pred ccccEEEccCCCCCCCcchhhcCCCCCCEEECcCCccCcCCCcccc-CCCCCCEEECcCCCCCCCcchhccCCCCCCEEE
Q 001653 268 VHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLC-ELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLD 346 (1037)
Q Consensus 268 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 346 (1037)
.+++.|++++|.+.+.++..+..+++|++|+|++|++.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4688888888888888888888899999999999988877777654 888999999999988877774 4678899999
Q ss_pred ccCCcCCcccChhhhcCCCCCCEEEccCCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccceeEEEccccc
Q 001653 347 VSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYV 426 (1037)
Q Consensus 347 Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 426 (1037)
+++|.+.+.+|. .+..+++|++|++++|.+. .
T Consensus 147 Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~-~---------------------------------------------- 178 (968)
T PLN00113 147 LSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLV-G---------------------------------------------- 178 (968)
T ss_pred CcCCcccccCCh-HHhcCCCCCEEECccCccc-c----------------------------------------------
Confidence 999988876775 6888888888888888761 1
Q ss_pred cCCCCchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCCh
Q 001653 427 DGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPV 506 (1037)
Q Consensus 427 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (1037)
.+|..+..+++|++|++++|.+.+.+|..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|.
T Consensus 179 ---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 179 ---KIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred ---cCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 134555556666666666666666666554 4566666666666666666666666677777777777777766666
Q ss_pred hhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCC
Q 001653 507 EIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLT 586 (1037)
Q Consensus 507 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 586 (1037)
.+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..++
T Consensus 255 ~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~ 332 (968)
T PLN00113 255 SLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPVALTSLP 332 (968)
T ss_pred hHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCChhHhcCC
Confidence 6554 66777777777777777777777777888888888877777766553 477788888888888777777777888
Q ss_pred CCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECc
Q 001653 587 NLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLS 666 (1037)
Q Consensus 587 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls 666 (1037)
+|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|.++..+++|+.|++++|++.+.+|..+..+++|+.|+++
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcCcccCCCCCC-cCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccC
Q 001653 667 NNSIFGTLPSCFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEI 745 (1037)
Q Consensus 667 ~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 745 (1037)
+|++++..|..+. ++.|+.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. .++|+.|++++|++.+.+
T Consensus 413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAV 491 (968)
T ss_pred CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCcc
Confidence 8888887777665 67888888888888888888888889999999999999988887664 588999999999999999
Q ss_pred chhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCc
Q 001653 746 PVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNM 825 (1037)
Q Consensus 746 p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1037)
|..+.++++|+.|++++|+++|.+|..+..+
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l------------------------------------------------- 522 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSC------------------------------------------------- 522 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCChHHcCc-------------------------------------------------
Confidence 9999999999999999999999998776553
Q ss_pred cccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccC
Q 001653 826 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV 905 (1037)
Q Consensus 826 ~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~ 905 (1037)
+.|+.|||++|.++|.+|..++.+++|+.|+|++|+++|.+|..+.++++|+.||+++|+++|.+|.. +.
T Consensus 523 ---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~ 592 (968)
T PLN00113 523 ---------KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GA 592 (968)
T ss_pred ---------cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-ch
Confidence 37889999999999999999999999999999999999999999999999999999999999999964 33
Q ss_pred CCCCCeEecCCCc
Q 001653 906 LNTLEVFKVAYNN 918 (1037)
Q Consensus 906 l~~L~~l~ls~N~ 918 (1037)
...+....+.+|.
T Consensus 593 ~~~~~~~~~~~n~ 605 (968)
T PLN00113 593 FLAINASAVAGNI 605 (968)
T ss_pred hcccChhhhcCCc
Confidence 3344444556665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-38 Score=330.77 Aligned_cols=367 Identities=24% Similarity=0.257 Sum_probs=295.3
Q ss_pred CCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhccCCCCCCEEEccCCcCCcccChhhhcCCCCCCEEEcc
Q 001653 294 LQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILS 373 (1037)
Q Consensus 294 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~ 373 (1037)
-+.||+++|++....+..|.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.|+. +....+..++.|++|||+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~s-v~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISS-VTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecccccc-ccHHHHHhHhhhhhhhhh
Confidence 345777777777666666667777777777777666 455544444557777777776654 555566666666666666
Q ss_pred CCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccceeEEEccccccCCCCchhhhcCCCCCEEEcCCCCCcc
Q 001653 374 NNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG 453 (1037)
Q Consensus 374 ~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 453 (1037)
.|.+..++.+
T Consensus 158 rN~is~i~~~---------------------------------------------------------------------- 167 (873)
T KOG4194|consen 158 RNLISEIPKP---------------------------------------------------------------------- 167 (873)
T ss_pred hchhhcccCC----------------------------------------------------------------------
Confidence 6666443321
Q ss_pred cCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccc
Q 001653 454 EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSF 533 (1037)
Q Consensus 454 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 533 (1037)
-+-.-.++++|+|++|+++......|.++.+|..|.++.|.++ .+|...|..+|+|+.|+|..|.+.-..-..|
T Consensus 168 -----sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltF 241 (873)
T KOG4194|consen 168 -----SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTF 241 (873)
T ss_pred -----CCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence 1112245666666666666666667777778888888888887 8888888889999999999999885546679
Q ss_pred cCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCC
Q 001653 534 ADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLR 613 (1037)
Q Consensus 534 ~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 613 (1037)
.++++|+.|.+..|.+. .+.+..|.++.++++|+|+.|+++..-...+.+++.|+.|++++|.+..+-++.++.+++|+
T Consensus 242 qgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred cCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 99999999999999998 88888999999999999999999988888999999999999999999998899999999999
Q ss_pred EEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCcccCCCCC---C-cCccCeEEcc
Q 001653 614 GLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCF---S-PASIEQVHLS 689 (1037)
Q Consensus 614 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~-~~~L~~L~L~ 689 (1037)
+|+|++|+|+...+..|..+..|++|.|++|.++.....+|..+++|++|||++|.++..+.+.. . +++|+.|.+.
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 99999999998888899999999999999999987777889999999999999999987766532 2 7899999999
Q ss_pred CccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEeccccc
Q 001653 690 KNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNY 740 (1037)
Q Consensus 690 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 740 (1037)
+|++..+...+|.++.+|+.|||.+|.|..+-|++|..+ .|+.|.+..-.
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 999999888999999999999999999998889999988 88888876533
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-39 Score=329.50 Aligned_cols=476 Identities=27% Similarity=0.395 Sum_probs=307.6
Q ss_pred ccccEEEccCCCCCCCcchhhcCCCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhccCCCCCCEEEc
Q 001653 268 VHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDV 347 (1037)
Q Consensus 268 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 347 (1037)
..|+.+.+++|.+.. +.+.+.++..|.+|++++|++. ..|++++.+..++.++.++|+++ .+|+.++.+.+|+.+++
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 456777777777765 3334677777777777777777 56667777777777777777776 56667777777777777
Q ss_pred cCCcCCcccChhhhcCCCCCCEEEccCCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccceeEEEcccccc
Q 001653 348 SYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVD 427 (1037)
Q Consensus 348 s~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 427 (1037)
++|.+.. +++ .++.+..|+.++..+|++.+.
T Consensus 122 s~n~~~e-l~~-~i~~~~~l~dl~~~~N~i~sl----------------------------------------------- 152 (565)
T KOG0472|consen 122 SSNELKE-LPD-SIGRLLDLEDLDATNNQISSL----------------------------------------------- 152 (565)
T ss_pred cccceee-cCc-hHHHHhhhhhhhccccccccC-----------------------------------------------
Confidence 7777754 554 566666677777766666332
Q ss_pred CCCCchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCChh
Q 001653 428 GGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVE 507 (1037)
Q Consensus 428 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (1037)
|..+..+.++..+++.+|++. ..|+... +++.|+.++.. .|.+. .+|++
T Consensus 153 ----p~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~------------------------~N~L~-tlP~~ 201 (565)
T KOG0472|consen 153 ----PEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCN------------------------SNLLE-TLPPE 201 (565)
T ss_pred ----chHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccc------------------------hhhhh-cCChh
Confidence 333444445556666666665 3333222 24444444444 44443 56666
Q ss_pred hhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCC
Q 001653 508 IGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTN 587 (1037)
Q Consensus 508 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 587 (1037)
++. +.+|+.|++..|++. ..| .|.++..|+++.++.|++. .+|......+.++.+||+.+|+++ ..|+.+.-+.+
T Consensus 202 lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 202 LGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred hcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 554 456666666666665 344 5666666666666666665 666666666666666666666666 35566666666
Q ss_pred CcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCC-----CCCCCE----EECCCC---cC-ccC-Ccc-
Q 001653 588 LMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGN-----LPTLQY----IIMPNN---NL-EGP-IPI- 652 (1037)
Q Consensus 588 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~----L~L~~n---~l-~~~-~~~- 652 (1037)
|++||+++|.++ .+|..++++ .|+.|-+.+|.+...-.+.+.. ++.|+. =.++.- .- .+. .+.
T Consensus 277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 666666666666 345566666 6666666666653111010000 001110 000000 00 000 111
Q ss_pred --cccCCCCCCEEECcCCcCcccCCCCCCcC---ccCeEEccCccccCcchhhhcCCCCc-cEEEcCCCcCCCCCchhhc
Q 001653 653 --EFCQRDSLKILDLSNNSIFGTLPSCFSPA---SIEQVHLSKNKIEGRLESIIHDNPHL-VTLDLSYNSLHGSIPNRID 726 (1037)
Q Consensus 653 --~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~L-~~L~Ls~N~l~~~~~~~~~ 726 (1037)
......+.++|++++-+++....+.|... -.+..+++.|++.. +|..+..++.+ +.+++++|.++ .+|..+.
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~is-fv~~~l~ 432 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKIS-FVPLELS 432 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccc-cchHHHH
Confidence 12234567788888888886665666532 37778888888874 44455544444 44566777666 7888889
Q ss_pred CCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCC
Q 001653 727 RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPG 806 (1037)
Q Consensus 727 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1037)
.+++|..|+|++|.+. .+|..++.+..|+.||+|.|+|. .+|.|+...
T Consensus 433 ~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~l------------------------------ 480 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYEL------------------------------ 480 (565)
T ss_pred hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhH------------------------------
Confidence 9999999999999888 89999999999999999999886 555554221
Q ss_pred CCCCCCCccceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCC
Q 001653 807 QSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIE 886 (1037)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~ 886 (1037)
..+..+--++|++...-|..++++.+|..|||.+|.+. .||..++++++|+
T Consensus 481 ----------------------------q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 481 ----------------------------QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR 531 (565)
T ss_pred ----------------------------HHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence 12333444568887666666999999999999999999 8999999999999
Q ss_pred eEeCCCCcCC
Q 001653 887 SLDLSYNLLH 896 (1037)
Q Consensus 887 ~LdLs~N~l~ 896 (1037)
+|+|++|.+.
T Consensus 532 hLeL~gNpfr 541 (565)
T KOG0472|consen 532 HLELDGNPFR 541 (565)
T ss_pred EEEecCCccC
Confidence 9999999998
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.2e-40 Score=334.52 Aligned_cols=476 Identities=26% Similarity=0.412 Sum_probs=366.3
Q ss_pred CCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhccCCCCCCEEEccCCcCCcccChhhhcCCCCCCEE
Q 001653 291 MTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEEL 370 (1037)
Q Consensus 291 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L 370 (1037)
-.-|+.+.+++|.+.. +.+.+.++..|.+|++++|+++ ..|++++.+..++.++.++|+++. +|. .+..+.+|..+
T Consensus 44 qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~-~i~s~~~l~~l 119 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPE-QIGSLISLVKL 119 (565)
T ss_pred hcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccH-HHhhhhhhhhh
Confidence 3557788888888773 4456778888888888888887 567778888888888888888864 776 67777788888
Q ss_pred EccCCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccceeEEEccccccCCCCchhhhcCCCCCEEEcCCCC
Q 001653 371 ILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLN 450 (1037)
Q Consensus 371 ~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~ 450 (1037)
++++|.+.. +|+.++.+..++.++..+|+
T Consensus 120 ~~s~n~~~e---------------------------------------------------l~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 120 DCSSNELKE---------------------------------------------------LPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred hccccceee---------------------------------------------------cCchHHHHhhhhhhhccccc
Confidence 888777633 34455566667777777777
Q ss_pred CcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCC
Q 001653 451 LSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIP 530 (1037)
Q Consensus 451 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 530 (1037)
++ ..|..++ .+. ++..+++.+|.+. ..|++... +..|+.||...|.+. .+|
T Consensus 149 i~-slp~~~~-~~~------------------------~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 149 IS-SLPEDMV-NLS------------------------KLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred cc-cCchHHH-HHH------------------------HHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence 76 4555442 344 4445555555555 45555545 679999999999887 788
Q ss_pred ccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCC
Q 001653 531 SSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCY 610 (1037)
Q Consensus 531 ~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 610 (1037)
..++.+.+|..|++.+|.+. .+|+ |.+|..|++++++.|++.-...+....++++.+||+.+|+++ ..|+.+..+.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 89999999999999999998 8994 567999999999999998655555669999999999999998 7788899999
Q ss_pred CCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCC---CCEE-------ECcCC---------cCc
Q 001653 611 MLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDS---LKIL-------DLSNN---------SIF 671 (1037)
Q Consensus 611 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---L~~L-------~ls~n---------~l~ 671 (1037)
+|++||+++|.|+ ..|..++++ .|+.|.+.+|.+..+ ...+-+... |++| -++.- ...
T Consensus 276 sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 276 SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence 9999999999998 578889999 999999999998743 222211110 1111 01110 011
Q ss_pred ccCCCCCCcCccCeEEccCccccCcchhhhcCCC--CccEEEcCCCcCCCCCchhhcCCCCCcE-EecccccccccCchh
Q 001653 672 GTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNP--HLVTLDLSYNSLHGSIPNRIDRLPQLNY-LLLAHNYIKGEIPVQ 748 (1037)
Q Consensus 672 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~p~~ 748 (1037)
+..|......+.+.|+++.-+++.++.+.|.... -.+..+++.|++. .+|..+..+..+.+ +.+++|.+. .+|..
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~ 430 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLE 430 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHH
Confidence 2233333356788899999999877776665433 3788999999998 78888877766554 555555555 89999
Q ss_pred hcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCcccc
Q 001653 749 LCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYY 828 (1037)
Q Consensus 749 ~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1037)
++.+++|..|+|++|.+. .+|..++.+
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~l---------------------------------------------------- 457 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMGSL---------------------------------------------------- 457 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhhhh----------------------------------------------------
Confidence 999999999999998875 677665543
Q ss_pred ccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCC
Q 001653 829 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNT 908 (1037)
Q Consensus 829 ~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~ 908 (1037)
..|+.||+|+|+|. .+|..+-.+..++.+--++|++....|+.+.+|.+|..|||.+|.+. .||+.++++++
T Consensus 458 ------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn 529 (565)
T KOG0472|consen 458 ------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN 529 (565)
T ss_pred ------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence 26889999999998 88988888888888877889999888888999999999999999997 68889999999
Q ss_pred CCeEecCCCcce
Q 001653 909 LEVFKVAYNNLS 920 (1037)
Q Consensus 909 L~~l~ls~N~l~ 920 (1037)
|+.|++++|++.
T Consensus 530 L~hLeL~gNpfr 541 (565)
T KOG0472|consen 530 LRHLELDGNPFR 541 (565)
T ss_pred eeEEEecCCccC
Confidence 999999999998
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-36 Score=320.76 Aligned_cols=362 Identities=25% Similarity=0.274 Sum_probs=330.1
Q ss_pred ceeEEEccccccCCCCchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEc
Q 001653 416 QLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 495 (1037)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 495 (1037)
.-+.|++++|.+...-+.++.++++|+++++..|.++ .+|... +....++.|+|.+|.+.......+..++.|+.||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 5678999999999999999999999999999999998 788753 44556999999999999999999999999999999
Q ss_pred cCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCcccc
Q 001653 496 FNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ 575 (1037)
Q Consensus 496 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~ 575 (1037)
|.|.++ .+|..-+..-+++++|+|++|.|+......|..+.+|.+|.|+.|+++ .+|...|..+++|+.|+|..|+|.
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence 999998 788776665578999999999999888889999999999999999999 999999999999999999999998
Q ss_pred ccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCccccc
Q 001653 576 GHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFC 655 (1037)
Q Consensus 576 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 655 (1037)
-.....|.++++|+.|.|..|++...-.+.|..|.+++.|+|..|+++..-..|+.+++.|+.|++++|.+..+.++.+.
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 76678899999999999999999988889999999999999999999988888999999999999999999999999999
Q ss_pred CCCCCCEEECcCCcCcccCCCCCC-cCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCch---hhcCCCCC
Q 001653 656 QRDSLKILDLSNNSIFGTLPSCFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPN---RIDRLPQL 731 (1037)
Q Consensus 656 ~~~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~---~~~~l~~L 731 (1037)
.+++|++|+|++|+|+...++.|. +..|++|+|++|.++..-..+|..+++|++|||++|.++..+.+ .|..+++|
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 999999999999999988888777 79999999999999999899999999999999999999876643 57789999
Q ss_pred cEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcC
Q 001653 732 NYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEG 781 (1037)
Q Consensus 732 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~ 781 (1037)
+.|++.+|++....-.+|..+++|+.|||.+|.+-..-|..|..+.+++.
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~L 444 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKEL 444 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhh
Confidence 99999999999666688999999999999999998777877777655544
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-35 Score=330.50 Aligned_cols=498 Identities=26% Similarity=0.295 Sum_probs=254.9
Q ss_pred ccccccccccccccEEEccCCCCCCCcchhhcCCCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhcc
Q 001653 258 TILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLA 337 (1037)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 337 (1037)
+.+|..+..-..++.|+++.|.+....-+...+.-+|+.||+++|++. ..|..+..+..|+.|+++.|.|. ..|.+..
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~ 88 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCS 88 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhh
Confidence 345666666566778888877765533344455556888888888877 67777888888888888888887 5677777
Q ss_pred CCCCCCEEEccCCcCCcccChhhhcCCCCCCEEEccCCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccce
Q 001653 338 NLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQL 417 (1037)
Q Consensus 338 ~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 417 (1037)
++.+|+++.|.+|++.. .|. .+..+.+|+.|++++|.+...|
T Consensus 89 ~~~~l~~lnL~~n~l~~-lP~-~~~~lknl~~LdlS~N~f~~~P------------------------------------ 130 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQS-LPA-SISELKNLQYLDLSFNHFGPIP------------------------------------ 130 (1081)
T ss_pred hhhcchhheeccchhhc-Cch-hHHhhhcccccccchhccCCCc------------------------------------
Confidence 88888888888888753 665 7788888888888888774333
Q ss_pred eEEEccccccCCCCchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccC
Q 001653 418 TSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFN 497 (1037)
Q Consensus 418 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 497 (1037)
..+..+..+..++.++|.....++. ...+.+++..|.+.+.+......++. .||+.+
T Consensus 131 ---------------l~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 131 ---------------LVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred ---------------hhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 3333333444444444411111111 11444444445444444444433333 344444
Q ss_pred CcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCcccccc
Q 001653 498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGH 577 (1037)
Q Consensus 498 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~ 577 (1037)
|.+. .. .+..+..|+.+....|++. .+.. .-++|+.|+.++|.++..
T Consensus 188 N~~~-~~---------------------------dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~ 234 (1081)
T KOG0618|consen 188 NEME-VL---------------------------DLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTL 234 (1081)
T ss_pred chhh-hh---------------------------hhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceee
Confidence 4443 11 2233334444444444433 1111 123444444444444311
Q ss_pred CcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCC
Q 001653 578 IFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR 657 (1037)
Q Consensus 578 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 657 (1037)
.+ .....+|++++++.|+++ .+|++++.|.+|+.++..+|.++ .+|..+...++|+.|.+.+|.+. .+|......
T Consensus 235 ~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~ 309 (1081)
T KOG0618|consen 235 DV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGL 309 (1081)
T ss_pred cc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccc
Confidence 11 111234444444444444 23344445555555555555443 34444444444555555555444 344444444
Q ss_pred CCCCEEECcCCcCcccCCCCCC--cCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEe
Q 001653 658 DSLKILDLSNNSIFGTLPSCFS--PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLL 735 (1037)
Q Consensus 658 ~~L~~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 735 (1037)
+.|++|||..|++....+..+. ..++..|+.+.|++.......=...+.|+.|.+.+|.+++..-..+.+..+|++|+
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 4555555555554422222222 22344444444444433211112233455555555555544434444555555555
Q ss_pred cccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCcc
Q 001653 736 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKE 815 (1037)
Q Consensus 736 L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1037)
|++|++.......+.++..|+.|+||+|+++ .+|.++.++.
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~-------------------------------------- 430 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG-------------------------------------- 430 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh--------------------------------------
Confidence 5555554332333445555555555555554 3443333221
Q ss_pred ceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcC
Q 001653 816 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 895 (1037)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l 895 (1037)
.|++|..-+|++. ..| ++.++++|+.+|+|.|+|+...-..-..-++|++||||+|.=
T Consensus 431 --------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 431 --------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred --------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 3444445555554 455 566666666666666666643322222226677777777753
Q ss_pred CCcCcccccCCCCCCeEecCCC
Q 001653 896 HGKIPPQLIVLNTLEVFKVAYN 917 (1037)
Q Consensus 896 ~~~ip~~~~~l~~L~~l~ls~N 917 (1037)
.-..-..|..+.++..+++.-|
T Consensus 489 l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 489 LVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccchhhhHHhhhhhheecccC
Confidence 3334445555566666666555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1e-34 Score=323.68 Aligned_cols=381 Identities=25% Similarity=0.327 Sum_probs=296.7
Q ss_pred CchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCChhhhh
Q 001653 431 FPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGT 510 (1037)
Q Consensus 431 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (1037)
.|..+..+.+|+.|+++.|++. .+|..+ ..++.++.+..++| .....++.
T Consensus 106 lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N------------------------~~~~~lg~---- 155 (1081)
T KOG0618|consen 106 LPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNN------------------------EKIQRLGQ---- 155 (1081)
T ss_pred CchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcc------------------------hhhhhhcc----
Confidence 4555666667777777777775 555554 34444444444444 11111111
Q ss_pred CCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcE
Q 001653 511 YLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMT 590 (1037)
Q Consensus 511 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 590 (1037)
..++.+++..|.+.+.++..+..++. .|||++|.+. ... ...+.+|+.+....|+++... ...++|+.
T Consensus 156 --~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~----~~g~~l~~ 223 (1081)
T KOG0618|consen 156 --TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE----ISGPSLTA 223 (1081)
T ss_pred --ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE----ecCcchhe
Confidence 13677888888888888877777766 7999999886 222 235889999999999987543 24578999
Q ss_pred EECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcC
Q 001653 591 LQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670 (1037)
Q Consensus 591 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l 670 (1037)
|+.++|.++...+. ..-.+|++++++.|+++ .+|+|++.+.+|+.+...+|+++ .+|..+...++|+.|++..|.+
T Consensus 224 L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred eeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh
Confidence 99999999854433 22358999999999998 56799999999999999999996 7899999999999999999999
Q ss_pred cccCCCCCCcCccCeEEccCccccCcchhhhcCCCC-ccEEEcCCCcCCCCCch-hhcCCCCCcEEecccccccccCchh
Q 001653 671 FGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPH-LVTLDLSYNSLHGSIPN-RIDRLPQLNYLLLAHNYIKGEIPVQ 748 (1037)
Q Consensus 671 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~ 748 (1037)
....|..-...+|++|+|..|++...++..+.-... |..|+.+.|++.. .|. .=...+.|+.|++.+|.++...-+.
T Consensus 300 ~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhh
Confidence 976666556899999999999999877766665554 8889999999884 442 2233678999999999999888888
Q ss_pred hcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCcccc
Q 001653 749 LCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYY 828 (1037)
Q Consensus 749 ~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1037)
+.+.+.|++|+|++|++. ++|....
T Consensus 379 l~~~~hLKVLhLsyNrL~-~fpas~~------------------------------------------------------ 403 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLN-SFPASKL------------------------------------------------------ 403 (1081)
T ss_pred hccccceeeeeecccccc-cCCHHHH------------------------------------------------------
Confidence 999999999999999996 4553211
Q ss_pred ccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCC
Q 001653 829 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNT 908 (1037)
Q Consensus 829 ~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~ 908 (1037)
..+..|++|+||+|+|+ .+|..+..+..|++|...+|++. ..| +++.+++|+.+|+|.|+|+...-..-..-+.
T Consensus 404 ---~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~ 477 (1081)
T KOG0618|consen 404 ---RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPN 477 (1081)
T ss_pred ---hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcc
Confidence 11347889999999999 89999999999999999999999 677 8999999999999999998654333333389
Q ss_pred CCeEecCCCcc
Q 001653 909 LEVFKVAYNNL 919 (1037)
Q Consensus 909 L~~l~ls~N~l 919 (1037)
|++||+++|..
T Consensus 478 LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 478 LKYLDLSGNTR 488 (1081)
T ss_pred cceeeccCCcc
Confidence 99999999973
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.2e-32 Score=289.18 Aligned_cols=357 Identities=25% Similarity=0.375 Sum_probs=162.6
Q ss_pred EEccCCcCc-ccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccC
Q 001653 493 LDVFNNFFQ-GHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571 (1037)
Q Consensus 493 L~l~~n~l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~ 571 (1037)
.|+++|.++ +..|..+-. +++++.|.|...++. .+|..++.+.+|++|.+++|++. ++-..+. .++.|+.+++.+
T Consensus 12 vDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLRSVIVRD 87 (1255)
T ss_pred ccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhHHHhhhc
Confidence 444444444 233443333 344455555444444 34444455555555555555444 3332222 244444455544
Q ss_pred ccccc-cCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCC
Q 001653 572 NRLQG-HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPI 650 (1037)
Q Consensus 572 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 650 (1037)
|++.. -+|..+..+..|+.|||++|++. ..|..+...+++-.|+||+|+|..+....|.+++-|-.|||++|++. .+
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L 165 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML 165 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc
Confidence 44431 23444444455555555555544 34444444444555555555554322233444445555555555544 34
Q ss_pred cccccCCCCCCEEECcCCcCcccC-CCCCCcCccCeEEccCcccc-CcchhhhcCCCCccEEEcCCCcCCCCCchhhcCC
Q 001653 651 PIEFCQRDSLKILDLSNNSIFGTL-PSCFSPASIEQVHLSKNKIE-GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRL 728 (1037)
Q Consensus 651 ~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l 728 (1037)
|..+..+..|++|+|++|.+.-.- ...-++++|+.|.+++-+=+ .-+|..+..+.+|..+|+|.|.+. ..|+.+..+
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l 244 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL 244 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence 444444445555555555442110 00011334444444433211 233444444455555555555554 445555555
Q ss_pred CCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCC
Q 001653 729 PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQS 808 (1037)
Q Consensus 729 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (1037)
++|+.|+|++|+|+ .+....+...+|++|++|.|+++ .+|.++..+
T Consensus 245 ~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL-------------------------------- 290 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL-------------------------------- 290 (1255)
T ss_pred hhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh--------------------------------
Confidence 55555555555554 33334444444555555555554 334333221
Q ss_pred CCCCCccceEEEeecCccccccccccccccEEEccCCcccc-cCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCe
Q 001653 809 SPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIES 887 (1037)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~ 887 (1037)
+.|+.|++.+|+++- -||..||.+.+|+++..++|.+. ..|+.+..+..|+.
T Consensus 291 --------------------------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 291 --------------------------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK 343 (1255)
T ss_pred --------------------------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence 134444444444431 24555555555555555555554 45555555555555
Q ss_pred EeCCCCcCCCcCcccccCCCCCCeEecCCCc
Q 001653 888 LDLSYNLLHGKIPPQLIVLNTLEVFKVAYNN 918 (1037)
Q Consensus 888 LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N~ 918 (1037)
|.|++|+|. ..|+.+--++.|++||+..|+
T Consensus 344 L~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 344 LKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hccccccee-echhhhhhcCCcceeeccCCc
Confidence 555555554 244455555555555555553
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=6.3e-32 Score=286.92 Aligned_cols=393 Identities=24% Similarity=0.334 Sum_probs=225.8
Q ss_pred ceeEEEccccccC-CCCchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEE
Q 001653 416 QLTSISLSGYVDG-GTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD 494 (1037)
Q Consensus 416 ~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 494 (1037)
-.+-+++++|.++ +.+|.....+++++-|.|...++. .+|+.+ +.+.+|+.|.+++|++... ...+..++.|+.++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHh
Confidence 3456677777776 447777777777777777777776 677765 5677777777777766432 23344455555555
Q ss_pred ccCCcCc-ccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCcc
Q 001653 495 VFNNFFQ-GHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR 573 (1037)
Q Consensus 495 l~~n~l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~ 573 (1037)
+.+|++. .-||.++|. +..|+.|||++|++. ..|..+...+++-+|+||+|+|. +||..+|.++..|-
T Consensus 85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLL-------- 153 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLL-------- 153 (1255)
T ss_pred hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHh--------
Confidence 5555543 124445444 444555555555554 34444444555555555555554 45555444444444
Q ss_pred ccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCc-cCCcc
Q 001653 574 LQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE-GPIPI 652 (1037)
Q Consensus 574 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 652 (1037)
.|||++|++. .+|+.+..+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.
T Consensus 154 ----------------fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 154 ----------------FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred ----------------hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 4444444443 33444445555555555555443222222334455555555554322 23455
Q ss_pred cccCCCCCCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCc
Q 001653 653 EFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLN 732 (1037)
Q Consensus 653 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 732 (1037)
++..+.+|..+|+|.|++. ..|+++..+++|+.|+||+|.|+ .+.-..+...+|+
T Consensus 217 sld~l~NL~dvDlS~N~Lp------------------------~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLP------------------------IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLE 271 (1255)
T ss_pred chhhhhhhhhccccccCCC------------------------cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhh
Confidence 5555555555555555544 33445555555555666666555 3333444555666
Q ss_pred EEecccccccccCchhhcCCCCccEEEccCCcCcC-cCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCC
Q 001653 733 YLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG-RIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP 811 (1037)
Q Consensus 733 ~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1037)
+|+++.|+++ .+|.+++++++|+.|.+.+|+++- .||..++.+
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL----------------------------------- 315 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL----------------------------------- 315 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh-----------------------------------
Confidence 6666666666 666677777777777777766652 244444432
Q ss_pred CCccceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCC
Q 001653 812 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 891 (1037)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs 891 (1037)
..|+++..++|.+. ..|+.+..+..|+.|.|++|++- ..|++|.-++.|+.|||.
T Consensus 316 -----------------------~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 316 -----------------------IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred -----------------------hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence 24556666677776 77888888888888888888887 788888888888888888
Q ss_pred CCcCCCcCcccccCCCCCCeEecCC---C--cceecCCC
Q 001653 892 YNLLHGKIPPQLIVLNTLEVFKVAY---N--NLSGKIPD 925 (1037)
Q Consensus 892 ~N~l~~~ip~~~~~l~~L~~l~ls~---N--~l~g~ip~ 925 (1037)
.|.=--..|.--..-+.|+.-++.. + +|.|..|.
T Consensus 371 eNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 371 ENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred CCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence 8854433333222224566655443 2 35565553
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=1.4e-28 Score=249.34 Aligned_cols=395 Identities=22% Similarity=0.238 Sum_probs=194.5
Q ss_pred cCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeec-cccccccchhHhhcCCCCCEEE
Q 001653 490 LATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISN-NQLTGEIPERMATGCFSLEILA 568 (1037)
Q Consensus 490 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~i~~~~~~~~~~L~~L~ 568 (1037)
...++|..|+|+ .||...|..+++|+.|||++|+|+.+-|.+|.++++|.+|-+.+ |+|+ .+|...|.++.+|+.|.
T Consensus 69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 334444555554 45555555555555555555555555555555555555544444 5555 55555555555555555
Q ss_pred ccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccC------------CCCCcccCCCCCC
Q 001653 569 LSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLF------------GKIPRWLGNLPTL 636 (1037)
Q Consensus 569 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~------------~~~~~~~~~l~~L 636 (1037)
+.-|++.....+.|..++++..|.+.+|.+..+-..+|..+.+++.+.+..|.+. ...|..++.....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 5555555555555555555555555555555333335555555555555555421 1112222222222
Q ss_pred CEEECCCCcCccCCcccccCC-CCCCEEECcCCcCcccCCC-CCC-cCccCeEEccCccccCcchhhhcCCCCccEEEcC
Q 001653 637 QYIIMPNNNLEGPIPIEFCQR-DSLKILDLSNNSIFGTLPS-CFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLS 713 (1037)
Q Consensus 637 ~~L~L~~n~l~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~-~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 713 (1037)
.-..+.++++..+.+..|... ..+..--.+.+...+..|. +|. +++|+.|+|++|+++++-+.+|.+...++.|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 222233333322222222111 0111111111112222221 122 4555555555555555555555555555555555
Q ss_pred CCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcC-----------------cCCCccccC
Q 001653 714 YNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG-----------------RIPPCLVNT 776 (1037)
Q Consensus 714 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g-----------------~ip~~~~~~ 776 (1037)
.|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|..|.|-.|++.+ ..|+|-..-
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~ 386 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPG 386 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCc
Confidence 555554444445555555555555555555555555555555555555555432 345554443
Q ss_pred CcCcCCCCCCCCccccccccccccccCCCCCCCCC--CCccceEEEeecCccccccccccccccEEEccCCcccccCCcc
Q 001653 777 SLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP--MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ 854 (1037)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~ 854 (1037)
.+.+...+++....+.|...+. ..|......++ .+... +...|++.+. .+|..
T Consensus 387 ~~~~~~~~dv~~~~~~c~~~ee--~~~~~s~~cP~~c~c~~t----------------------VvRcSnk~lk-~lp~~ 441 (498)
T KOG4237|consen 387 FVRQIPISDVAFGDFRCGGPEE--LGCLTSSPCPPPCTCLDT----------------------VVRCSNKLLK-LLPRG 441 (498)
T ss_pred hhccccchhccccccccCCccc--cCCCCCCCCCCCcchhhh----------------------hHhhcccchh-hcCCC
Confidence 3444444444444444431111 11111111111 11112 2334444444 44544
Q ss_pred ccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecCCC
Q 001653 855 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN 917 (1037)
Q Consensus 855 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N 917 (1037)
+. ....+|+|.+|.++ .+|++ .+.+| .+|||+|+++..--.+|.+++.|.+|-+|||
T Consensus 442 iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 442 IP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 43 34566778888887 66666 55677 7888888887777777888888888888876
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=3.1e-26 Score=232.46 Aligned_cols=393 Identities=20% Similarity=0.204 Sum_probs=276.1
Q ss_pred EEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccC-
Q 001653 493 LDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN- 571 (1037)
Q Consensus 493 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~- 571 (1037)
.+-++-.++ .+|.++ .+.-.+++|..|+|+.+.|.+|..+++|+.|||++|+|+ .|....|.++.+|..|-+.+
T Consensus 51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 344444454 677775 357899999999999888899999999999999999998 88888889999988776655
Q ss_pred ccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCc----
Q 001653 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE---- 647 (1037)
Q Consensus 572 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---- 647 (1037)
|+|+......|.++..|+.|.+.-|++.-...+.|..+++|..|.+.+|.+....-..|..+..++.+.+..|.+.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 9999998899999999999999999999888899999999999999999997554458999999999999998842
Q ss_pred --------cCCcccccCCCCCCEEECcCCcCcccCCCCCCcC--ccCeEEccCccccCcch-hhhcCCCCccEEEcCCCc
Q 001653 648 --------GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA--SIEQVHLSKNKIEGRLE-SIIHDNPHLVTLDLSYNS 716 (1037)
Q Consensus 648 --------~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~--~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~Ls~N~ 716 (1037)
...|..++...-.....+.+.++..+-+..|... ++..-..+.+...++-| ..|..+++|++|+|++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 1233344444444444555555555544444422 33222334444444444 689999999999999999
Q ss_pred CCCCCchhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCcccccccc
Q 001653 717 LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRA 796 (1037)
Q Consensus 717 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1037)
++++-+.+|..+..++.|.|..|++...-...|.++..|+.|+|.+|+++...|..|..........-...|....|.-.
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 99999999999999999999999999776778999999999999999999888877655432111111111112222211
Q ss_pred ccccc------cCCCCCCCCCCCccceEEEeecCccccccccccccccEEEccCCcccc---cCCccccC---------c
Q 001653 797 SVYRS------ACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG---EIPTQIGY---------L 858 (1037)
Q Consensus 797 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g---~~p~~~~~---------l 858 (1037)
+.-.+ ...+++. ....++.++++.+.+.. .-|++.+. .
T Consensus 366 wl~~Wlr~~~~~~~~~Cq------------------------~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c 421 (498)
T KOG4237|consen 366 WLGEWLRKKSVVGNPRCQ------------------------SPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPC 421 (498)
T ss_pred HHHHHHhhCCCCCCCCCC------------------------CCchhccccchhccccccccCCccccCCCCCCCCCCCc
Confidence 11100 0011111 11234444444443321 12222221 1
Q ss_pred CCC-CEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecCCCccee
Q 001653 859 TRI-HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG 921 (1037)
Q Consensus 859 ~~L-~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g 921 (1037)
+-+ ++..-|++.++ .+|..+. ..-++|++.+|.++ .+|.+ .+.+| .+|+|+|+++-
T Consensus 422 ~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 422 TCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred chhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 222 34456666666 5665554 45678999999998 56766 56778 99999999864
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.5e-22 Score=253.38 Aligned_cols=318 Identities=23% Similarity=0.291 Sum_probs=198.5
Q ss_pred cCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccc
Q 001653 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEK 582 (1037)
Q Consensus 503 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 582 (1037)
.+|..+....++|+.|++.++.+. .+|..| ...+|+.|++++|++. .++... ..+++|+.|+++++.....+| .+
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~l 653 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DL 653 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-cc
Confidence 344444333345677777666665 455555 3566777777777665 555544 236667777776655434444 35
Q ss_pred cCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCE
Q 001653 583 FNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKI 662 (1037)
Q Consensus 583 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 662 (1037)
..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|+.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~ 729 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISW 729 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence 566677777777766656666667777777777777765555566544 5667777777776554444432 345677
Q ss_pred EECcCCcCcccCCCCCCcCccCeEEccCcccc-------CcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEe
Q 001653 663 LDLSNNSIFGTLPSCFSPASIEQVHLSKNKIE-------GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLL 735 (1037)
Q Consensus 663 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 735 (1037)
|++++|.+. .+|..+.+++|++|.+.++... ...+..+...++|+.|++++|...+.+|.+++++++|+.|+
T Consensus 730 L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 730 LDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred eecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 777777765 4455555666666666653321 11222233346777777777766666777777777777777
Q ss_pred cccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCcc
Q 001653 736 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKE 815 (1037)
Q Consensus 736 L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1037)
+++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------------------------------- 844 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI------------------------------------------- 844 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-------------------------------------------
Confidence 77765555666655 5777777777776543222211
Q ss_pred ceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCC-CccccchhhhhhcCccCCeEeCCCCc
Q 001653 816 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNL 894 (1037)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~-N~l~~~ip~~~~~l~~L~~LdLs~N~ 894 (1037)
.++++.|+|++|.++ .+|..++.+++|+.|+|++ |+++ .+|..+..+++|+.++++++.
T Consensus 845 ------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 ------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 125667788888877 6777778888888888877 5555 466677777888888877763
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=8.5e-22 Score=249.83 Aligned_cols=341 Identities=23% Similarity=0.263 Sum_probs=273.4
Q ss_pred CChhhhhCCCCCcEEECcCCc------CCCCCCccccCCC-CCCEEEeeccccccccchhHhhcCCCCCEEEccCccccc
Q 001653 504 IPVEIGTYLPGLMELNLSRNA------FNGSIPSSFADMK-MLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576 (1037)
Q Consensus 504 ~~~~~~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~ 576 (1037)
+....+..+++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..+ .+.+|+.|++++|++..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence 344455567888888886553 2334666676664 6999999999997 888876 37899999999999874
Q ss_pred cCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccC
Q 001653 577 HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQ 656 (1037)
Q Consensus 577 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 656 (1037)
++..+..+++|+.|+|+++...+.+|. ++.+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ +
T Consensus 626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 567778899999999999876667774 7889999999999998878899999999999999999987666778765 7
Q ss_pred CCCCCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCC-------CCCchhhcCCC
Q 001653 657 RDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH-------GSIPNRIDRLP 729 (1037)
Q Consensus 657 ~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~-------~~~~~~~~~l~ 729 (1037)
+++|+.|++++|...+.+|.. ..+|+.|++++|.+... |..+ .+++|++|++.++... ...+..+...+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 899999999999877777654 46899999999998754 4433 5788999998875422 12222333457
Q ss_pred CCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCC
Q 001653 730 QLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSS 809 (1037)
Q Consensus 730 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1037)
+|+.|++++|...+.+|..++++++|+.|++++|+..+.+|..+ +
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~---------------------------------- 823 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N---------------------------------- 823 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C----------------------------------
Confidence 89999999999888999999999999999999987665666443 1
Q ss_pred CCCCccceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEe
Q 001653 810 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLD 889 (1037)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~Ld 889 (1037)
++.|+.|++++|..-..+|.. ..+|+.|+|++|.++ .+|.++..+++|+.|+
T Consensus 824 ------------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 824 ------------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLD 875 (1153)
T ss_pred ------------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence 347889999998665566653 367999999999999 6899999999999999
Q ss_pred CCC-CcCCCcCcccccCCCCCCeEecCCCc
Q 001653 890 LSY-NLLHGKIPPQLIVLNTLEVFKVAYNN 918 (1037)
Q Consensus 890 Ls~-N~l~~~ip~~~~~l~~L~~l~ls~N~ 918 (1037)
|++ |++. .+|..+..++.|+.++++++.
T Consensus 876 L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 876 MNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 999 5665 478788899999999999863
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.1e-21 Score=228.95 Aligned_cols=266 Identities=23% Similarity=0.334 Sum_probs=150.4
Q ss_pred CCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEEC
Q 001653 514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQL 593 (1037)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 593 (1037)
.-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|. .+++|++|++++|+++.. |. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 4667788888777 5665554 36778888888777 5664 245666666666666643 22 1245555555
Q ss_pred cCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCccc
Q 001653 594 DGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGT 673 (1037)
Q Consensus 594 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ 673 (1037)
++|.++. +|..+ +.|+.|++++|+++. +|.. .+ +|+.|++++|++++.
T Consensus 270 s~N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~-LP~~---p~------------------------~L~~LdLS~N~L~~L 317 (788)
T PRK15387 270 FSNPLTH-LPALP---SGLCKLWIFGNQLTS-LPVL---PP------------------------GLQELSVSDNQLASL 317 (788)
T ss_pred cCCchhh-hhhch---hhcCEEECcCCcccc-cccc---cc------------------------ccceeECCCCccccC
Confidence 5555542 22211 234455555555442 2221 23 444445554444432
Q ss_pred CCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCCC
Q 001653 674 LPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK 753 (1037)
Q Consensus 674 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 753 (1037)
|.. +.+|+.|++++|.+++. |.. ..+|+.|+|++|++++ +|.. .++|+.|++++|+++ .+|.. ..
T Consensus 318 -p~l--p~~L~~L~Ls~N~L~~L-P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~ 382 (788)
T PRK15387 318 -PAL--PSELCKLWAYNNQLTSL-PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PS 382 (788)
T ss_pred -CCC--cccccccccccCccccc-ccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---cc
Confidence 211 23444555555555432 211 1356677777777663 4432 245666677777766 35543 24
Q ss_pred CccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCccccccccc
Q 001653 754 EVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI 833 (1037)
Q Consensus 754 ~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1037)
+|+.|++++|++++ +|..
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l------------------------------------------------------------- 400 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL------------------------------------------------------------- 400 (788)
T ss_pred ccceEEecCCcccC-CCCc-------------------------------------------------------------
Confidence 56777777777762 3321
Q ss_pred cccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccC
Q 001653 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV 905 (1037)
Q Consensus 834 l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~ 905 (1037)
.+.|+.||+++|+|+ .+|... ..|+.|+|++|+|+ .+|..+.++++|+.|||++|+|+|.+|..+..
T Consensus 401 ~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 401 PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 114566777777777 356432 35666777777777 56777777777777777777777777766543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4.8e-21 Score=223.67 Aligned_cols=269 Identities=25% Similarity=0.316 Sum_probs=195.2
Q ss_pred CCcCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEE
Q 001653 488 QKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEIL 567 (1037)
Q Consensus 488 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L 567 (1037)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----cccccee
Confidence 34668999999998 7888764 489999999999984 554 2588999999999999 78752 5789999
Q ss_pred EccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCc
Q 001653 568 ALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE 647 (1037)
Q Consensus 568 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 647 (1037)
++++|.++.. |.. .++|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++
T Consensus 268 ~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLTHL-PAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchhhh-hhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence 9999999854 332 3678999999999984 4542 4689999999999985 4542 245777888888887
Q ss_pred cCCcccccCCCCCCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcC
Q 001653 648 GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDR 727 (1037)
Q Consensus 648 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 727 (1037)
+ +|.. ..+|+.|++++|++++ +|.. +. +|+.|++++|.+++ +|..
T Consensus 336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l--p~------------------------~L~~L~Ls~N~L~~-LP~l--- 380 (788)
T PRK15387 336 S-LPTL---PSGLQELSVSDNQLAS-LPTL--PS------------------------ELYKLWAYNNRLTS-LPAL--- 380 (788)
T ss_pred c-cccc---ccccceEecCCCccCC-CCCC--Cc------------------------ccceehhhcccccc-Cccc---
Confidence 4 4431 2356777777777664 2321 23 34455555555552 3432
Q ss_pred CCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCC
Q 001653 728 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQ 807 (1037)
Q Consensus 728 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1037)
.++|+.|++++|+++ .+|.. .++|+.|++++|++++ +|...
T Consensus 381 ~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---------------------------------- 421 (788)
T PRK15387 381 PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---------------------------------- 421 (788)
T ss_pred ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch----------------------------------
Confidence 235666777777766 34432 2567888888888873 55321
Q ss_pred CCCCCCccceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCc
Q 001653 808 SSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLK 883 (1037)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 883 (1037)
..|+.|++++|+|+ .+|..++.++.|+.|+|++|.|+|.+|..+..+.
T Consensus 422 ---------------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 422 ---------------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred ---------------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 14567899999998 7899999999999999999999999998885543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2e-19 Score=212.03 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=65.8
Q ss_pred CCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEEC
Q 001653 514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQL 593 (1037)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 593 (1037)
+.+.|++++++++ .+|..+. +.|+.|++++|+++ .+|..++ .+|++|++++|+++. +|..+ .++|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEEC
Confidence 5677888888777 4555443 46788888888877 6776553 467777777776663 23322 134556666
Q ss_pred cCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCc
Q 001653 594 DGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE 647 (1037)
Q Consensus 594 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 647 (1037)
++|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 666555 3343332 24555555555554 2333322 24444444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=4e-19 Score=209.53 Aligned_cols=182 Identities=26% Similarity=0.366 Sum_probs=122.5
Q ss_pred CCcCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEE
Q 001653 488 QKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEIL 567 (1037)
Q Consensus 488 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L 567 (1037)
.+.+.|+++++.++ .+|..+. +.++.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+ ..+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEE
Confidence 35678888888887 6776553 47889999999888 4555443 57899999999988 788765 3478899
Q ss_pred EccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCc
Q 001653 568 ALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE 647 (1037)
Q Consensus 568 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 647 (1037)
++++|.+.. +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|+++
T Consensus 247 ~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 247 ELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred ECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 999998874 455442 57889999999888 4566553 478999999998874 454332 46777777777776
Q ss_pred cCCcccccCCCCCCEEECcCCcCcccCCCCCCcCccCeEEccCcccc
Q 001653 648 GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIE 694 (1037)
Q Consensus 648 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 694 (1037)
. +|..+. ++|+.|++++|.+++ +|..+ +++|+.|++++|+++
T Consensus 318 ~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l-~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 318 A-LPETLP--PGLKTLEAGENALTS-LPASL-PPELQVLDVSKNQIT 359 (754)
T ss_pred c-CCcccc--ccceeccccCCcccc-CChhh-cCcccEEECCCCCCC
Confidence 3 443332 456666666666653 33222 234444444444443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1e-18 Score=193.35 Aligned_cols=105 Identities=25% Similarity=0.144 Sum_probs=48.3
Q ss_pred EEEccCccccc-cCcccccCCCCCcEEECcCCcCCCC----CCccccCCCCCCEEeccCCccCC------CCCcccCCCC
Q 001653 566 ILALSNNRLQG-HIFSEKFNLTNLMTLQLDGNNFIGE----IPESLSKCYMLRGLYLSDNHLFG------KIPRWLGNLP 634 (1037)
Q Consensus 566 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~ 634 (1037)
.|+|..+.+++ .....+..+.+|+.++++++.++.. ++..+...+.++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35555666552 2223334455566666666665432 23334444556666666555441 1122334444
Q ss_pred CCCEEECCCCcCccCCcccccCCCC---CCEEECcCCcC
Q 001653 635 TLQYIIMPNNNLEGPIPIEFCQRDS---LKILDLSNNSI 670 (1037)
Q Consensus 635 ~L~~L~L~~n~l~~~~~~~~~~~~~---L~~L~ls~n~l 670 (1037)
+|+.|++++|.+.+..+..+..+.. |+.|++++|++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 5555555555544333333332222 44444444444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.3e-18 Score=190.49 Aligned_cols=212 Identities=25% Similarity=0.255 Sum_probs=105.9
Q ss_pred EEECcCCcCC-CCCCccccCCCCCCEEEeeccccccc----cchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEE
Q 001653 517 ELNLSRNAFN-GSIPSSFADMKMLERLDISNNQLTGE----IPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTL 591 (1037)
Q Consensus 517 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 591 (1037)
.|+|..+.++ ......+..+..|+.++++++.+++. ++..+ ...+++++++++++.+.+. +..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~-~~~~--------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRI-PRGL--------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCc-chHH---------
Confidence 3555555555 23334455556666666666666421 22221 1234455555555444310 0000
Q ss_pred ECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCC---CCEEECCCCcCcc----CCcccccCC-CCCCEE
Q 001653 592 QLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPT---LQYIIMPNNNLEG----PIPIEFCQR-DSLKIL 663 (1037)
Q Consensus 592 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~~-~~L~~L 663 (1037)
..++..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++.+ .+...+..+ ++|+.|
T Consensus 71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 112234445556666666666665444444443333 7777777776653 122233344 556666
Q ss_pred ECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCC----CchhhcCCCCCcEEecccc
Q 001653 664 DLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGS----IPNRIDRLPQLNYLLLAHN 739 (1037)
Q Consensus 664 ~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N 739 (1037)
++++|.+++.... .+...+..+++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 143 ~L~~n~l~~~~~~-------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 143 VLGRNRLEGASCE-------------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred EcCCCcCCchHHH-------------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 6666655531110 1223444555666666666666532 2223344456666666666
Q ss_pred ccccc----CchhhcCCCCccEEEccCCcCc
Q 001653 740 YIKGE----IPVQLCQLKEVRLIDLSHNNLS 766 (1037)
Q Consensus 740 ~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 766 (1037)
.+.+. ++..+..+++|+.|++++|+++
T Consensus 204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 204 GLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred ccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 66522 2334555667777777777665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-18 Score=156.32 Aligned_cols=188 Identities=27% Similarity=0.478 Sum_probs=150.6
Q ss_pred cCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCC
Q 001653 673 TLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL 752 (1037)
Q Consensus 673 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 752 (1037)
.+|..|..+.++.|.|++|+++.. |..++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 345556677788888888888854 446788899999999999999 78899999999999999999998 899999999
Q ss_pred CCccEEEccCCcCcCc-CCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCccccccc
Q 001653 753 KEVRLIDLSHNNLSGR-IPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQG 831 (1037)
Q Consensus 753 ~~L~~L~ls~N~l~g~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1037)
+.|++|||.+|+++.. +|..|..
T Consensus 102 p~levldltynnl~e~~lpgnff~-------------------------------------------------------- 125 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFY-------------------------------------------------------- 125 (264)
T ss_pred chhhhhhccccccccccCCcchhH--------------------------------------------------------
Confidence 9999999999998732 2322211
Q ss_pred cccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCC---C
Q 001653 832 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN---T 908 (1037)
Q Consensus 832 ~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~---~ 908 (1037)
++.|+.|+|+.|.+. .+|.++|++++|+.|.+..|.+- ..|.+++.++.|++|.+.+|+++ .+|+.++++. +
T Consensus 126 --m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~ 200 (264)
T KOG0617|consen 126 --MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGN 200 (264)
T ss_pred --HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhh
Confidence 346778899999998 88999999999999999999988 78999999999999999999998 5666666543 2
Q ss_pred CCeEecCCCcceecCC
Q 001653 909 LEVFKVAYNNLSGKIP 924 (1037)
Q Consensus 909 L~~l~ls~N~l~g~ip 924 (1037)
=+++.+.+|++..+|.
T Consensus 201 k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 201 KQVMRMEENPWVNPIA 216 (264)
T ss_pred HHHHhhhhCCCCChHH
Confidence 2445556666655443
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.65 E-value=4.8e-16 Score=183.67 Aligned_cols=118 Identities=33% Similarity=0.615 Sum_probs=106.6
Q ss_pred cccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecC
Q 001653 836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA 915 (1037)
Q Consensus 836 ~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls 915 (1037)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceecCCCC--CCCCCCCcccccCCCCCCCCCCCCCCC
Q 001653 916 YNNLSGKIPDR--AQFSTFEEDSYEGNPFLCGQPLSKSCN 953 (1037)
Q Consensus 916 ~N~l~g~ip~~--~~~~~~~~~~~~gNp~lc~~~~~~~c~ 953 (1037)
+|+++|.+|.. ..+......++.||+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999973 222334566899999999987656674
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=4.8e-18 Score=152.89 Aligned_cols=180 Identities=26% Similarity=0.446 Sum_probs=156.2
Q ss_pred hcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCc
Q 001653 701 IHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNE 780 (1037)
Q Consensus 701 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~ 780 (1037)
+.+++.++.|.||+|+++ .+|..+..+.+|++|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+..
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~---- 101 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF---- 101 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC----
Confidence 445678899999999999 67888999999999999999999 89999999999999999999997 667666553
Q ss_pred CCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCccccccccccccccEEEccCCcccc-cCCccccCcC
Q 001653 781 GYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLT 859 (1037)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g-~~p~~~~~l~ 859 (1037)
+.|..|||++|++.. ..|..|..++
T Consensus 102 ------------------------------------------------------p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 102 ------------------------------------------------------PALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred ------------------------------------------------------chhhhhhccccccccccCCcchhHHH
Confidence 378899999999986 5899999999
Q ss_pred CCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecCCCcceecCCCCCCCCCCCc---cc
Q 001653 860 RIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEE---DS 936 (1037)
Q Consensus 860 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~---~~ 936 (1037)
.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+|+-..|+.++++-... ..
T Consensus 128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r 205 (264)
T KOG0617|consen 128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMR 205 (264)
T ss_pred HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHh
Confidence 9999999999999 89999999999999999999987 5799999999999999999999998888776543321 22
Q ss_pred ccCCCCC
Q 001653 937 YEGNPFL 943 (1037)
Q Consensus 937 ~~gNp~l 943 (1037)
.+.|||.
T Consensus 206 ~E~NPwv 212 (264)
T KOG0617|consen 206 MEENPWV 212 (264)
T ss_pred hhhCCCC
Confidence 4566665
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=1.8e-12 Score=153.41 Aligned_cols=114 Identities=29% Similarity=0.452 Sum_probs=101.5
Q ss_pred CccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCccccccccc
Q 001653 754 EVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI 833 (1037)
Q Consensus 754 ~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1037)
.++.|+|++|.++|.+|..+..+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-------------------------------------------------------- 442 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-------------------------------------------------------- 442 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC--------------------------------------------------------
Confidence 367889999999999887765533
Q ss_pred cccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCC-CCCCeE
Q 001653 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-NTLEVF 912 (1037)
Q Consensus 834 l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l-~~L~~l 912 (1037)
.|+.|+|++|.++|.+|..++.++.|+.|||++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..+
T Consensus 443 --~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 443 --HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred --CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 78999999999999999999999999999999999999999999999999999999999999999998764 467899
Q ss_pred ecCCCcceecCCC
Q 001653 913 KVAYNNLSGKIPD 925 (1037)
Q Consensus 913 ~ls~N~l~g~ip~ 925 (1037)
++++|...|.+|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999986655553
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=4.8e-13 Score=143.55 Aligned_cols=102 Identities=27% Similarity=0.383 Sum_probs=46.5
Q ss_pred CCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccc
Q 001653 660 LKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739 (1037)
Q Consensus 660 L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 739 (1037)
-...|++.|++.....+.-.+..|+.+.|..|.+. .+|..+.++..|+++||+.|+++ ..|..+..++ |+.|.+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34455555555522222112444445555555444 23344444455555555555554 3444443332 444445555
Q ss_pred cccccCchhhcCCCCccEEEccCCcC
Q 001653 740 YIKGEIPVQLCQLKEVRLIDLSHNNL 765 (1037)
Q Consensus 740 ~l~~~~p~~~~~l~~L~~L~ls~N~l 765 (1037)
+++ .+|..++.+..|..||.+.|.+
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhh
Confidence 544 4444444444444444444444
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.5e-11 Score=136.89 Aligned_cols=122 Identities=33% Similarity=0.429 Sum_probs=61.8
Q ss_pred EEECCCCcCccCCcccccCCCCCCEEECcCCcCcccCCCCCCcC-ccCeEEccCccccCcchhhhcCCCCccEEEcCCCc
Q 001653 638 YIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA-SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS 716 (1037)
Q Consensus 638 ~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~ 716 (1037)
.+++..|.+.. ....+...+.++.|++.+|.++...+...... +|+.|++++|++... |..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCch
Confidence 46666666532 22233344566777777777764444333332 555555555555532 2334455555555555555
Q ss_pred CCCCCchhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCC
Q 001653 717 LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 763 (1037)
Q Consensus 717 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N 763 (1037)
++ .+|...+..+.|+.|++++|+++ .+|........|+.+++++|
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 55 33333334455555555555555 44444434444445555544
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=6.1e-11 Score=134.93 Aligned_cols=199 Identities=30% Similarity=0.462 Sum_probs=128.5
Q ss_pred CEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCC-CccEEEcCCCcCCCCCchhhcCCCCCcEEecccc
Q 001653 661 KILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNP-HLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739 (1037)
Q Consensus 661 ~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 739 (1037)
..++++.|.+..........+.++.|++.+|.++.+.+ .....+ +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 35677777664444444445667777777777775443 333332 6777777777777 45566777777777777777
Q ss_pred cccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEE
Q 001653 740 YIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQ 819 (1037)
Q Consensus 740 ~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1037)
++. .+|...+.++.|+.|++++|+++ .+|.....
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-------------------------------------------- 207 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-------------------------------------------- 207 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh--------------------------------------------
Confidence 777 56666557777777777777775 33322110
Q ss_pred EeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcC
Q 001653 820 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 899 (1037)
Q Consensus 820 ~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~i 899 (1037)
...|..+++++|.+. .++..+..+..+..+.+++|++. .+|..++.+++++.|++++|+++...
T Consensus 208 --------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 208 --------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred --------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccccc
Confidence 124566777777533 45666677777777777777776 33666677777777777777776433
Q ss_pred cccccCCCCCCeEecCCCcceecCCC
Q 001653 900 PPQLIVLNTLEVFKVAYNNLSGKIPD 925 (1037)
Q Consensus 900 p~~~~~l~~L~~l~ls~N~l~g~ip~ 925 (1037)
+ ++.+.+++.|++++|.++...|.
T Consensus 272 ~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 272 S--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred c--ccccCccCEEeccCccccccchh
Confidence 3 66777777777777777766554
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=1.4e-11 Score=125.32 Aligned_cols=195 Identities=24% Similarity=0.327 Sum_probs=110.2
Q ss_pred CccCCCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCc---CCCcchh-------ccCCCCCCcEeeCCCCcCC
Q 001653 6 FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNH---FNNSIFS-------SLGGLSSLRHLSLADNRLN 75 (1037)
Q Consensus 6 f~~l~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~-------~l~~l~~L~~L~Ls~n~~~ 75 (1037)
..++..+++|+||+|.+.-.........+.+.++|+..++|+-. ....+|+ .+-.+++|++||||+|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34667788888888888544334445556777788888887542 2223343 3445668888888888775
Q ss_pred CccC---ccccCCCCCCcEEECcCCccCccc------------cccccccccccceecccCCCCcccCCCchhhhcCCCC
Q 001653 76 GSID---IKGLNSLSNLEELDMTGNAIENLV------------VPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLP 140 (1037)
Q Consensus 76 ~~~~---~~~l~~l~~L~~LdLs~n~i~~~~------------~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~ 140 (1037)
..-+ .+-++++..|++|.|.+|.+.-.. ..+.......|+++..+.|.+.+.+...+-..+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 3321 123466777888888887664221 1122334455666666666665555555555566666
Q ss_pred cccEEecccccccccc---chhhcccCCCCcEEEccCCcccchh---hhhhhcccccchhhccccc
Q 001653 141 SLKTLYLSHTKFKGTV---VNQKLHNFTNLEELILDESDLHVSQ---LLQSIASFTSLKHLSMQDC 200 (1037)
Q Consensus 141 ~L~~L~L~~n~~~~~~---~~~~l~~l~~L~~L~L~~~~~~~~~---~~~~l~~l~~L~~L~l~~~ 200 (1037)
.|+.+.++.|.+.... ....+..+++|+.|+|..|.++... +...++.+++|+++++.+|
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 6666666666543221 1234555566666666665544332 2333344444444444444
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=1.1e-11 Score=125.91 Aligned_cols=203 Identities=22% Similarity=0.303 Sum_probs=120.7
Q ss_pred hcccCCCCcEEEccCCcccchh---hhhhhcccccchhhcccccccccccCccccccccccceecccccccccCccchhc
Q 001653 160 KLHNFTNLEELILDESDLHVSQ---LLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQI 236 (1037)
Q Consensus 160 ~l~~l~~L~~L~L~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 236 (1037)
.+..+++|++++|+.|.+.... +-..+.++..|++|.+.+|..+...... ++ +.|..|... .
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~-l~--~al~~l~~~--k---------- 151 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR-LG--RALFELAVN--K---------- 151 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH-HH--HHHHHHHHH--h----------
Confidence 4455667777777777665433 4456667788888888888665332111 00 112222110 0
Q ss_pred cccccCccceecccCCCCCCC--ccccccccccccccEEEccCCCCCCC----cchhhcCCCCCCEEECcCCccCcC---
Q 001653 237 VGESMPSLNFLSLTNSSLNKH--TILDQGLCQLVHLQGLYIRDNDLRDG----LPWCLANMTSLQVLYASSNQLTGN--- 307 (1037)
Q Consensus 237 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~Ls~n~l~~~--- 307 (1037)
-...-+.|+++....|.+... ..+...+...+.|+.+.++.|.|... +...+..+++|++|||.+|-++..
T Consensus 152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 001234555555555554432 22334556667778888877776532 234567788888888888877643
Q ss_pred -CCccccCCCCCCEEECcCCCCCCCcchhc-----cCCCCCCEEEccCCcCCcc---cChhhhcCCCCCCEEEccCCcc
Q 001653 308 -ISPGLCELVLLRKLYIDNNDLRGSLPLCL-----ANLTSLRVLDVSYNQLTEN---ISSSSLMHLTSIEELILSNNHF 377 (1037)
Q Consensus 308 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~---i~~~~l~~l~~L~~L~L~~n~l 377 (1037)
+...++.+++|++|++++|.+...-..+| ...++|++|.+.+|.++.. +....+...+.|+.|+|++|.+
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 23356667788888888888765433333 2467888888888877541 1112345577788888888877
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=5.2e-12 Score=135.71 Aligned_cols=214 Identities=28% Similarity=0.383 Sum_probs=165.1
Q ss_pred EEEeeccccccccchhHhh-cCCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccC
Q 001653 541 RLDISNNQLTGEIPERMAT-GCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSD 619 (1037)
Q Consensus 541 ~L~L~~n~l~~~i~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 619 (1037)
.|.|++-++. ..|...+. .+.--...|++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|..+|++.
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 3455555554 45543322 2344456788999987 56777777788888899998887 6788889999999999999
Q ss_pred CccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchh
Q 001653 620 NHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLES 699 (1037)
Q Consensus 620 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 699 (1037)
|+++ ..|..++.++ |+.|.+++|+++ .+|+.++...+|..||.+.|.+....+....+.+|+.|.+..|.+...+++
T Consensus 131 NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E 207 (722)
T KOG0532|consen 131 NQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE 207 (722)
T ss_pred chhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH
Confidence 9987 6777777765 889999999987 788888888899999999999986666555688899999999988865554
Q ss_pred hhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCCCC---ccEEEccCCc
Q 001653 700 IIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE---VRLIDLSHNN 764 (1037)
Q Consensus 700 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~ls~N~ 764 (1037)
+. .-.|..||+|.|+++ .+|-.|..+..|++|-|.+|.++ ..|..+|..-. .++|+..-+.
T Consensus 208 -l~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 208 -LC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -Hh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 34 456889999999998 78899999999999999999998 67777764433 4566666663
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=8.8e-11 Score=112.92 Aligned_cols=131 Identities=26% Similarity=0.438 Sum_probs=51.2
Q ss_pred hcCCCCcceEeCCCCcCCCcchhccC-CCCCCcEeeCCCCcCCCccCccccCCCCCCcEEECcCCccCcccccccc-ccc
Q 001653 34 LSRLTNLKFLYLNDNHFNNSIFSSLG-GLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDF-RGL 111 (1037)
Q Consensus 34 l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~-~~~ 111 (1037)
+.++..+++|+|++|.|.. .+.++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|.|+.+. +.+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~--~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSIS--EGLDKNL 87 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-C--HHHHHH-
T ss_pred ccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCccc--cchHHhC
Confidence 4556678888888888875 34565 5778888888888887 444 5777888888888888888762 223 457
Q ss_pred cccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccc--hhhcccCCCCcEEEccC
Q 001653 112 RKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVV--NQKLHNFTNLEELILDE 174 (1037)
Q Consensus 112 ~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~--~~~l~~l~~L~~L~L~~ 174 (1037)
+.|+.|++++|.|.++.. ...++.+++|++|++.+|.+..... ...+..+|+|+.||-..
T Consensus 88 p~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 788888888888876654 3557788999999999988763311 24567889999887543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.7e-11 Score=124.72 Aligned_cols=216 Identities=21% Similarity=0.287 Sum_probs=132.4
Q ss_pred cCCCCcceEeCCCCcCCCcch-hccCCCCCCcEeeCCCCcCCCccCc-cccCCCCCCcEEECcCCccCcccccccccccc
Q 001653 35 SRLTNLKFLYLNDNHFNNSIF-SSLGGLSSLRHLSLADNRLNGSIDI-KGLNSLSNLEELDMTGNAIENLVVPKDFRGLR 112 (1037)
Q Consensus 35 ~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~~~-~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~ 112 (1037)
++++.|++..|.++.+..... +....+++++.|||++|-++.-.+. .....+++|+.|+++.|.+........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 466777777777776653211 3556677777777777766522221 12355777777777777665443333344566
Q ss_pred ccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhcccCCCCcEEEccCCcccchhhhhhhcccccc
Q 001653 113 KLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSL 192 (1037)
Q Consensus 113 ~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L 192 (1037)
.++.|.++.|+++. ..+...+..+|+|+.|+|..|... .+......-++.|++|+|++|.+...+-....+.+|.|
T Consensus 198 ~lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 77777777777762 344455667788888888877421 11122334566778888888877666656667778888
Q ss_pred hhhcccccccccccCccc-----cccccccceecccccccccCccchhccccccCccceecccCCCCCC
Q 001653 193 KHLSMQDCVLKGALHGQD-----FLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNK 256 (1037)
Q Consensus 193 ~~L~l~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 256 (1037)
+.|+++.|.+........ ...+++|++|+++.|++..-..+-. -..+++|+.|.+..+.+++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~--l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH--LRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch--hhccchhhhhhcccccccc
Confidence 888888876654432222 3567888888888776522111100 1235677888877776654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=9.8e-11 Score=115.82 Aligned_cols=85 Identities=27% Similarity=0.287 Sum_probs=51.1
Q ss_pred cccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcC-cccccCCCCCCeEec
Q 001653 836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI-PPQLIVLNTLEVFKV 914 (1037)
Q Consensus 836 ~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~i-p~~~~~l~~L~~l~l 914 (1037)
+|+.||||+|.++ .+-..-..+-+.+.|+|++|.|.. -+.++.+=+|..||+++|+|.... -..+++++.|+.+.|
T Consensus 330 ~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 330 QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred cceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 4445555555554 333333445556667777776652 234556666777777777775432 245677778888888
Q ss_pred CCCcceecC
Q 001653 915 AYNNLSGKI 923 (1037)
Q Consensus 915 s~N~l~g~i 923 (1037)
-+|++++.+
T Consensus 407 ~~NPl~~~v 415 (490)
T KOG1259|consen 407 TGNPLAGSV 415 (490)
T ss_pred cCCCccccc
Confidence 888887643
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.3e-10 Score=121.42 Aligned_cols=116 Identities=21% Similarity=0.284 Sum_probs=78.7
Q ss_pred CCCCCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhccc
Q 001653 84 NSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHN 163 (1037)
Q Consensus 84 ~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~ 163 (1037)
+++.+|++..|.++.+......+....+.+.+.|||++|-+..+ ..+.+....+|+|+.|+|+.|.+........-..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw--~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW--FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH--HHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 34556666666666555432223455666666677777666543 2344556778888999998888765444444446
Q ss_pred CCCCcEEEccCCcccchhhhhhhcccccchhhcccccc
Q 001653 164 FTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCV 201 (1037)
Q Consensus 164 l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 201 (1037)
++.|+.|.++.|.++..++...+..+|+|+.|++..|.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 78888888888888877777777778888888887774
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=2.9e-10 Score=109.33 Aligned_cols=105 Identities=37% Similarity=0.514 Sum_probs=30.1
Q ss_pred CCCcceEeCCCCcCCCcchhccCCCCCCcEeeCCCCcCCCccCcccc-CCCCCCcEEECcCCccCccccccccccccccc
Q 001653 37 LTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGL-NSLSNLEELDMTGNAIENLVVPKDFRGLRKLN 115 (1037)
Q Consensus 37 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~ 115 (1037)
+.+|+.||+++|.++. .+.+..+++|++|++++|+++ .++. .+ ..+++|++|++++|+|.+...-..+..++.|+
T Consensus 41 l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-cccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 4445555555555443 123444455555555555554 2322 22 23455555555555544443333344444555
Q ss_pred eecccCCCCcccCCCchhhhcCCCCcccEEe
Q 001653 116 TLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146 (1037)
Q Consensus 116 ~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~ 146 (1037)
.|++.+|.+.... ..-...+..+|+|+.||
T Consensus 117 ~L~L~~NPv~~~~-~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 117 VLSLEGNPVCEKK-NYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TT-GGGGST-THHHHHHHH-TT-SEET
T ss_pred eeeccCCcccchh-hHHHHHHHHcChhheeC
Confidence 5555555444321 22222344445555554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=7e-10 Score=109.88 Aligned_cols=133 Identities=23% Similarity=0.199 Sum_probs=89.4
Q ss_pred cccccccccEEEccCCCCCCCcchhhcCCCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhccCCCCC
Q 001653 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSL 342 (1037)
Q Consensus 263 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 342 (1037)
.+..+..|+++|+++|.|+. +.++..-.|.++.|++|+|.+... ..+..+++|++|||++|.++ .+...-.++-+.
T Consensus 279 ~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 34455677777888777765 556677777788888888877744 23677777888888887776 333344466777
Q ss_pred CEEEccCCcCCcccChhhhcCCCCCCEEEccCCcccccccCcccccCCCCcceeeCCCccc
Q 001653 343 RVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQ 403 (1037)
Q Consensus 343 ~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~ 403 (1037)
++|.|+.|.+.. + +.++++-+|..||+++|++... .......+++-|+.+.+..|.+
T Consensus 355 KtL~La~N~iE~-L--SGL~KLYSLvnLDl~~N~Ie~l-deV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 355 KTLKLAQNKIET-L--SGLRKLYSLVNLDLSSNQIEEL-DEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eeeehhhhhHhh-h--hhhHhhhhheeccccccchhhH-HHhcccccccHHHHHhhcCCCc
Confidence 777787777653 2 2466777777788888877433 2344566777777777777665
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.7e-09 Score=82.79 Aligned_cols=60 Identities=45% Similarity=0.608 Sum_probs=37.8
Q ss_pred cccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcC
Q 001653 836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 895 (1037)
Q Consensus 836 ~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l 895 (1037)
.|+.|++++|+++...+..|..+++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666644445666666666666666666666666666666666666666654
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=3.7e-09 Score=83.44 Aligned_cols=61 Identities=39% Similarity=0.549 Sum_probs=57.6
Q ss_pred CCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecCCCcc
Q 001653 859 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL 919 (1037)
Q Consensus 859 ~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N~l 919 (1037)
++|++|++++|+|+...++.|.++++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999988889999999999999999999999899999999999999999986
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5.7e-10 Score=110.66 Aligned_cols=110 Identities=23% Similarity=0.307 Sum_probs=71.7
Q ss_pred CCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccc-cccccchhhcccCC
Q 001653 87 SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTK-FKGTVVNQKLHNFT 165 (1037)
Q Consensus 87 ~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~l~~l~ 165 (1037)
++||+||||...|+.......+..+++|+.|.+.++.+. ..+...+++-.+|+.|+++.+. ++.....-.+++++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld----D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD----DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC----cHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 358888888887765444456677788888888888776 5666677778888888888774 33333334566777
Q ss_pred CCcEEEccCCcccchhhhhhhccc-ccchhhccccc
Q 001653 166 NLEELILDESDLHVSQLLQSIASF-TSLKHLSMQDC 200 (1037)
Q Consensus 166 ~L~~L~L~~~~~~~~~~~~~l~~l-~~L~~L~l~~~ 200 (1037)
.|++|+++||....+.+...++.. ++|+.|++++|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 777777777765554433333333 34555555554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.6e-09 Score=123.12 Aligned_cols=225 Identities=25% Similarity=0.234 Sum_probs=121.3
Q ss_pred cCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccE
Q 001653 630 LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVT 709 (1037)
Q Consensus 630 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 709 (1037)
+..+++|..|++.+|++.. +...+..+.+|+.|++++|.|+...+ .-.++.|+.|++++|.++.. ..+..++.|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhc--cCCccchhhhc
Confidence 3344444555555554442 11114445555555555555543222 11133355555555555533 23334567777
Q ss_pred EEcCCCcCCCCCc-hhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCC
Q 001653 710 LDLSYNSLHGSIP-NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAP 788 (1037)
Q Consensus 710 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 788 (1037)
+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++-.-+..
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~---------------- 227 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLN---------------- 227 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcc----------------
Confidence 7777777764433 1 45666777777777777522 23333444444566666664110000
Q ss_pred ccccccccccccccCCCCCCCCCCCccceEEEeecCccccccccccc--cccEEEccCCcccccCCccccCcCCCCEEEc
Q 001653 789 TSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILT--SMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 866 (1037)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~L 866 (1037)
.+. .++.+++++|.+. .++..+..+..+..|++
T Consensus 228 --------------------------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 228 --------------------------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDL 262 (414)
T ss_pred --------------------------------------------cchhHHHHHHhcccCccc-cccccccccccccccch
Confidence 001 2567777788777 44456667777788888
Q ss_pred CCCccccchhhhhhcCccCCeEeCCCCcCCCc---Cccc-ccCCCCCCeEecCCCcceecCC
Q 001653 867 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK---IPPQ-LIVLNTLEVFKVAYNNLSGKIP 924 (1037)
Q Consensus 867 s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~---ip~~-~~~l~~L~~l~ls~N~l~g~ip 924 (1037)
+.|+++..-. +.....+..+.++.|.+... .... ....+.+....+.+|......+
T Consensus 263 ~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 263 SSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 8887774432 34455666677777776522 1111 4455667777777777766544
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=2.3e-08 Score=120.99 Aligned_cols=151 Identities=25% Similarity=0.316 Sum_probs=93.1
Q ss_pred CCCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCc--CCCcchhccCCCCCCcEeeCCCCcCCCccCccccCCC
Q 001653 9 FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNH--FNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSL 86 (1037)
Q Consensus 9 l~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 86 (1037)
....|.+.+-++.+..... =..++.|++|-+.+|. +.....+.|..++.|++|||++|.-.+.+|. .+++|
T Consensus 522 ~~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGEL 594 (889)
T ss_pred hhheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhh
Confidence 3445556666565532111 1345567777777775 4444455677788888888887766666775 77888
Q ss_pred CCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccc-cccchhhcccCC
Q 001653 87 SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFK-GTVVNQKLHNFT 165 (1037)
Q Consensus 87 ~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~-~~~~~~~l~~l~ 165 (1037)
.+||+|+++++.+..+ |..+..++.|..|++..+... ..++.....+++|++|.+..-... +......+.+++
T Consensus 595 i~LryL~L~~t~I~~L--P~~l~~Lk~L~~Lnl~~~~~l----~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHL--PSGLGNLKKLIYLNLEVTGRL----ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred hhhhcccccCCCcccc--chHHHHHHhhheecccccccc----ccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 8888888888877765 777777778887777776543 122333455788888887654311 122223344555
Q ss_pred CCcEEEc
Q 001653 166 NLEELIL 172 (1037)
Q Consensus 166 ~L~~L~L 172 (1037)
+|+.+..
T Consensus 669 ~L~~ls~ 675 (889)
T KOG4658|consen 669 HLENLSI 675 (889)
T ss_pred chhhhee
Confidence 5555544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=3.8e-09 Score=120.09 Aligned_cols=244 Identities=25% Similarity=0.255 Sum_probs=144.6
Q ss_pred CCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEE
Q 001653 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQ 592 (1037)
Q Consensus 513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 592 (1037)
..++.+++..|.+.. +-..+..+++|+.+++.+|++. .+...+ ..+++|++|++++|.|+... .+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccch-hhhhcchheecccccccccc--chhhccchhhhe
Confidence 345555555555542 2233555566666666666665 333321 23666666666666666443 334455577777
Q ss_pred CcCCcCCCCCCccccCCCCCCEEeccCCccCCCCC-cccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCc
Q 001653 593 LDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIP-RWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIF 671 (1037)
Q Consensus 593 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~ 671 (1037)
+++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence 777776643 234446677777777777764433 1 4566777777777777653 233334445555577777776
Q ss_pred ccCCCCCCcC--ccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEeccccccccc---Cc
Q 001653 672 GTLPSCFSPA--SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGE---IP 746 (1037)
Q Consensus 672 ~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~p 746 (1037)
..-+. .... .|+.+++++|.+.... ..+..+..+..||+++|++... ..+...+.+..+....|++... ..
T Consensus 222 ~~~~l-~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 222 KLEGL-NELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred eccCc-ccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence 33321 1122 2777888888776432 4556667888888888887743 2345566677777777776622 12
Q ss_pred hh-hcCCCCccEEEccCCcCcCcCC
Q 001653 747 VQ-LCQLKEVRLIDLSHNNLSGRIP 770 (1037)
Q Consensus 747 ~~-~~~l~~L~~L~ls~N~l~g~ip 770 (1037)
.. ....+.++.+.+..|+.....+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccccccccccCccccccc
Confidence 22 5566778888888887765444
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.64 E-value=3e-09 Score=110.87 Aligned_cols=236 Identities=22% Similarity=0.169 Sum_probs=114.6
Q ss_pred CCcEeeCCCCcCCCccCcc-ccCCCCCCcEEECcCCc-cCccccccccccccccceecccCC-CCcccCCCchhh-hcCC
Q 001653 63 SLRHLSLADNRLNGSIDIK-GLNSLSNLEELDMTGNA-IENLVVPKDFRGLRKLNTLYLGGS-GIPRIDGSKVLQ-SIGS 138 (1037)
Q Consensus 63 ~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~-~l~~ 138 (1037)
.|+.|.+.+++-.+.-+.. ...+++++++|++.++. +++.........+++++.+++..| .++ ....+ ....
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT----~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT----DVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH----HHHHHHHHHh
Confidence 4566666665543222211 22456666666666653 222222334455666666666663 333 12222 2345
Q ss_pred CCcccEEeccccc-cccccchhhcccCCCCcEEEccCCcccch-hhhhhhcccccchhhcccccccccccCcccc-cccc
Q 001653 139 LPSLKTLYLSHTK-FKGTVVNQKLHNFTNLEELILDESDLHVS-QLLQSIASFTSLKHLSMQDCVLKGALHGQDF-LKFK 215 (1037)
Q Consensus 139 l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~ 215 (1037)
+++|++++++++. +++........+++.++++.+.+|..... .+...-+..+.+.++++..|...+......+ ..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 6777777777764 33322233445556666666655532221 1222223345556666666644332222222 3466
Q ss_pred ccceecccccccccCccchhccccccCccceecccCCCCCCCccccccccccccccEEEccCCCCCC--CcchhhcCCCC
Q 001653 216 NLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRD--GLPWCLANMTS 293 (1037)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~ 293 (1037)
+|+.|+.+++.. .........++..++|+.+.+..|+......+..--.++++|+.+++..+.... .+...-.+++.
T Consensus 295 ~lq~l~~s~~t~-~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 295 ALQVLCYSSCTD-ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred HhhhhcccCCCC-CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 777777765543 333344445566677777777776532211122222345666666666554321 11111234556
Q ss_pred CCEEECcCCc
Q 001653 294 LQVLYASSNQ 303 (1037)
Q Consensus 294 L~~L~Ls~n~ 303 (1037)
|++|.+++|.
T Consensus 374 lr~lslshce 383 (483)
T KOG4341|consen 374 LRVLSLSHCE 383 (483)
T ss_pred hccCChhhhh
Confidence 6666666554
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=2e-08 Score=121.45 Aligned_cols=132 Identities=27% Similarity=0.306 Sum_probs=101.3
Q ss_pred cccccEEEccCCC--CCCCcchhhcCCCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhccCCCCCCE
Q 001653 267 LVHLQGLYIRDND--LRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRV 344 (1037)
Q Consensus 267 l~~L~~L~L~~n~--i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 344 (1037)
++.|++|-+..|. +.......|..++.|++|||++|.-.+.+|..++.+-+||+|++++..+. .+|..++++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 4578888888886 55555666888999999999998888889999999999999999999998 78999999999999
Q ss_pred EEccCCcCCcccChhhhcCCCCCCEEEccCCcccccccCcccccCCCCcceeeCCC
Q 001653 345 LDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEI 400 (1037)
Q Consensus 345 L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~ 400 (1037)
|++..+.....+ +.....+++|++|.+..-...........+.+++.|+.+....
T Consensus 623 Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 623 LNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred eccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999988765544 3366679999999887765323333344455666666555433
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.7e-09 Score=107.32 Aligned_cols=159 Identities=23% Similarity=0.268 Sum_probs=72.6
Q ss_pred CcceEeCCCCcCCCc-chhccCCCCCCcEeeCCCCcCCCccCccccCCCCCCcEEECcCC-ccCccccccccccccccce
Q 001653 39 NLKFLYLNDNHFNNS-IFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN-AIENLVVPKDFRGLRKLNT 116 (1037)
Q Consensus 39 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~L~~ 116 (1037)
.|++||||...++.. +-..++.+.+|+.|.|.++++.+.+-. .+++-.+|+.||++.+ .++.....-.+..++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 355555555555421 334455555555555555555544433 4555555555555544 2332222233444555555
Q ss_pred ecccCCCCcccCCCchhhhcCCCCcccEEeccccc--cccccchhhcccCCCCcEEEccCCcccchhhhhhhcccccchh
Q 001653 117 LYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTK--FKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKH 194 (1037)
Q Consensus 117 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~--~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~ 194 (1037)
|++++|.++..........+ -++|+.|+|+++. +...-......++++|..|||+++..-..+....+.+++.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 55555544422111111111 1345555555542 1111111122345555555555554433444455555555555
Q ss_pred hccccc
Q 001653 195 LSMQDC 200 (1037)
Q Consensus 195 L~l~~~ 200 (1037)
|.+++|
T Consensus 343 lSlsRC 348 (419)
T KOG2120|consen 343 LSLSRC 348 (419)
T ss_pred eehhhh
Confidence 555555
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.52 E-value=5.8e-08 Score=95.37 Aligned_cols=195 Identities=19% Similarity=0.281 Sum_probs=121.3
Q ss_pred CCCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCcC---CCc-------chhccCCCCCCcEeeCCCCcCCCcc
Q 001653 9 FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHF---NNS-------IFSSLGGLSSLRHLSLADNRLNGSI 78 (1037)
Q Consensus 9 l~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~-------~~~~l~~l~~L~~L~Ls~n~~~~~~ 78 (1037)
+..++.+|||+|.|...........+.+-++|+..++++-.. .+. +...+-+|++|+..+||.|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 567888999999886443334444556677888888886532 122 2345678888899999988887555
Q ss_pred Cc---cccCCCCCCcEEECcCCccCcccc------------ccccccccccceecccCCCCcccCCCchhhhcCCCCccc
Q 001653 79 DI---KGLNSLSNLEELDMTGNAIENLVV------------PKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLK 143 (1037)
Q Consensus 79 ~~---~~l~~l~~L~~LdLs~n~i~~~~~------------~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~ 143 (1037)
|. +-+++-+.|++|.+++|.+.-+.- .+.....+.|+.+....|.+..-+...+...+.....|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 43 335667788888888886543211 112344566777777777776544444444455556777
Q ss_pred EEeccccccccccc----hhhcccCCCCcEEEccCCcccchh---hhhhhcccccchhhcccccccc
Q 001653 144 TLYLSHTKFKGTVV----NQKLHNFTNLEELILDESDLHVSQ---LLQSIASFTSLKHLSMQDCVLK 203 (1037)
Q Consensus 144 ~L~L~~n~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~ 203 (1037)
++.+..|.+..... ...+..+.+|+.|++..|.++..+ +...++..+.|++|.+.+|...
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 77777776653311 123445667777777777655432 3445555566677777666543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=9e-08 Score=95.36 Aligned_cols=111 Identities=24% Similarity=0.275 Sum_probs=73.9
Q ss_pred CCCcEEECcCCccCccccc-cccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhcccCC
Q 001653 87 SNLEELDMTGNAIENLVVP-KDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFT 165 (1037)
Q Consensus 87 ~~L~~LdLs~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~ 165 (1037)
..++-|-+.++.|...... .....++..+.+||.+|.|+++. ++...+..+|.|++|+++.|++...+...- ....
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~ 121 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLK 121 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCc-cccc
Confidence 3445555556655544322 23345677888899999888663 455668899999999999999875543221 4567
Q ss_pred CCcEEEccCCcccchhhhhhhcccccchhhccccc
Q 001653 166 NLEELILDESDLHVSQLLQSIASFTSLKHLSMQDC 200 (1037)
Q Consensus 166 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 200 (1037)
+|++|.|.+..+.-......+..+|.+++|+++.|
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 89999998887655555555555666666666554
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1e-07 Score=94.89 Aligned_cols=187 Identities=21% Similarity=0.268 Sum_probs=105.0
Q ss_pred CCCEEeCCCCcccccccchhhHhh-cCCCCcceEeCCCCcCCC--cchhccCCCCCCcEeeCCCCcCCCccCcccc-CCC
Q 001653 11 QLESLDLSWNNIAGCVQNESLERL-SRLTNLKFLYLNDNHFNN--SIFSSLGGLSSLRHLSLADNRLNGSIDIKGL-NSL 86 (1037)
Q Consensus 11 ~L~~L~L~~~~i~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l 86 (1037)
.++.|.+.++.|.....- +.| ..++++++|||.+|.+++ ++...+.+|++|++|+|+.|++...|.. + .-+
T Consensus 46 a~ellvln~~~id~~gd~---~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~ 120 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDV---MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPL 120 (418)
T ss_pred chhhheecCCCCCcchhH---HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Ccccc
Confidence 444566666666433221 222 367778888888888865 3556677888888888888887644432 2 345
Q ss_pred CCCcEEECcCCccCccccccccccccccceecccCCCCcccC--CC---chhhh--------------------cCCCCc
Q 001653 87 SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID--GS---KVLQS--------------------IGSLPS 141 (1037)
Q Consensus 87 ~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~---~~~~~--------------------l~~l~~ 141 (1037)
.+|++|-|.+..+.-.........++.++.|.++.|++..+. +. .|... ..-.|+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 678888887776655444555666777777777777433211 11 11111 112234
Q ss_pred ccEEeccccccccccchhhcccCCCCcEEEccCCcccchhhhhhhcccccchhhccccccc
Q 001653 142 LKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVL 202 (1037)
Q Consensus 142 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 202 (1037)
+..+-+..|.+......+....++.+..|+|..+++..-.-.+.+.++++|..|.+.++..
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 4444444444444333444455555555566655555444445555556655555555433
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.39 E-value=2.4e-08 Score=104.37 Aligned_cols=264 Identities=18% Similarity=0.116 Sum_probs=134.4
Q ss_pred CcceEeCCCCcCCC--cchhccCCCCCCcEeeCCCCcCCCccC-ccccCCCCCCcEEECcCC-ccCcccccccccccccc
Q 001653 39 NLKFLYLNDNHFNN--SIFSSLGGLSSLRHLSLADNRLNGSID-IKGLNSLSNLEELDMTGN-AIENLVVPKDFRGLRKL 114 (1037)
Q Consensus 39 ~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~L 114 (1037)
.|+.|.++++.-.+ .+-..-.+++++++|++.++....... ...-.++++|++|++..+ .+++.........+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35555555553222 122334455555555555554221111 111234555555555552 33333222234445555
Q ss_pred ceecccCCCCcccCCCchhhhcCCCCcccEEecccccccc-ccchhhcccCCCCcEEEccCC-cccchhhhhhhcccccc
Q 001653 115 NTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKG-TVVNQKLHNFTNLEELILDES-DLHVSQLLQSIASFTSL 192 (1037)
Q Consensus 115 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~l~~l~~L 192 (1037)
+.++++++.-- .+..+-.....++.++.+.+.+|.-.+ ......-+.+.-+.++++..+ .+++.++...-..+..|
T Consensus 219 ~~lNlSwc~qi--~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQI--SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchh--hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 55555555321 111122223444555555555553111 011111123334455554444 23444555555667777
Q ss_pred hhhcccccccccccCccc-cccccccceecccccccccCccchhccccccCccceecccCCCCCCCcccccccccccccc
Q 001653 193 KHLSMQDCVLKGALHGQD-FLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQ 271 (1037)
Q Consensus 193 ~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 271 (1037)
+.|..++|...+...... .....+|++|.++.++. .....++.+...++.|+.+++..+.......+...-.+++.|+
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 788777775433322222 35667888888887764 3444556667778888888888887654444555556788899
Q ss_pred EEEccCCCCCCCc-----chhhcCCCCCCEEECcCCccC
Q 001653 272 GLYIRDNDLRDGL-----PWCLANMTSLQVLYASSNQLT 305 (1037)
Q Consensus 272 ~L~L~~n~i~~~~-----~~~l~~l~~L~~L~Ls~n~l~ 305 (1037)
.+.++++...... ...-..+..|+.+.|+++..+
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 9988877532211 112234555666666666543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=5.7e-08 Score=85.41 Aligned_cols=58 Identities=22% Similarity=0.444 Sum_probs=31.6
Q ss_pred ccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCC
Q 001653 837 MSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 896 (1037)
Q Consensus 837 l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~ 896 (1037)
++.++|++|.|+ .+|.++..++.|+.||++.|.|. ..|..|..|.++-.||.-.|.+.
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 344555555555 45555555555555555555555 44445555555555555555543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=7.8e-09 Score=114.61 Aligned_cols=116 Identities=29% Similarity=0.297 Sum_probs=86.5
Q ss_pred ccccccccccccccEEEccCCCCCCCcchhhcCCCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhcc
Q 001653 258 TILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLA 337 (1037)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 337 (1037)
..++.++.-+++|+.|+|++|+++... .+..+++|++|||++|.+....--...++. |..|++++|.++.. ..+.
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence 456677888889999999999987633 688899999999999988843222333444 88899999988743 3467
Q ss_pred CCCCCCEEEccCCcCCcccChhhhcCCCCCCEEEccCCccc
Q 001653 338 NLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF 378 (1037)
Q Consensus 338 ~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~ 378 (1037)
++.+|+.||+++|-+.+.-.-..+..+..|+.|+|.+|.+.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88899999999998776333334566778888899998873
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=2e-08 Score=111.42 Aligned_cols=160 Identities=25% Similarity=0.351 Sum_probs=94.9
Q ss_pred CCccCCCCCEEeCCCCcccccccchhhHhhc----CCC--------------------------CcceEeCCCCcCCCcc
Q 001653 5 LFTPFQQLESLDLSWNNIAGCVQNESLERLS----RLT--------------------------NLKFLYLNDNHFNNSI 54 (1037)
Q Consensus 5 ~f~~l~~L~~L~L~~~~i~~~~~~~~~~~l~----~l~--------------------------~L~~L~Ls~n~l~~~~ 54 (1037)
.+.+|+.||+|.|.++.+.-. .++..+. ++. .|..-+.+.|.+. .+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~m 179 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LM 179 (1096)
T ss_pred eeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hH
Confidence 456788999999999887521 1111110 000 2233333444443 34
Q ss_pred hhccCCCCCCcEeeCCCCcCCCccCccccCCCCCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhh
Q 001653 55 FSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQ 134 (1037)
Q Consensus 55 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 134 (1037)
.+++.-+++|++|+|++|++. . .+.+..+++|++|||++|.+..+. ......++ |.+|.+++|.++.+.+
T Consensus 180 D~SLqll~ale~LnLshNk~~-~--v~~Lr~l~~LkhLDlsyN~L~~vp-~l~~~gc~-L~~L~lrnN~l~tL~g----- 249 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFT-K--VDNLRRLPKLKHLDLSYNCLRHVP-QLSMVGCK-LQLLNLRNNALTTLRG----- 249 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhh-h--hHHHHhcccccccccccchhcccc-ccchhhhh-heeeeecccHHHhhhh-----
Confidence 555666677777777777776 2 235677777777777777776552 12222333 6677777777664433
Q ss_pred hcCCCCcccEEeccccccccccchhhcccCCCCcEEEccCCcccc
Q 001653 135 SIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHV 179 (1037)
Q Consensus 135 ~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 179 (1037)
+.++++|+.||+++|-+.+......+..+..|+.|.|.+|.+..
T Consensus 250 -ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 250 -IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 56677777777777766655544555566666666777666543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=1.9e-06 Score=84.95 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=66.8
Q ss_pred hHhhcCCCCcceEeCCCCcCCCc----chhccCCCCCCcEeeCCCCcCCC---ccC------ccccCCCCCCcEEECcCC
Q 001653 31 LERLSRLTNLKFLYLNDNHFNNS----IFSSLGGLSSLRHLSLADNRLNG---SID------IKGLNSLSNLEELDMTGN 97 (1037)
Q Consensus 31 ~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~---~~~------~~~l~~l~~L~~LdLs~n 97 (1037)
..-+..+..+..++||+|.|... +...+.+-.+|+..+++.-.... .++ ...+.+||+|+..|||.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 34456688899999999998764 44566777888888887643211 111 135677888888888888
Q ss_pred ccCcccccc---ccccccccceecccCCCCcccCCCchh
Q 001653 98 AIENLVVPK---DFRGLRKLNTLYLGGSGIPRIDGSKVL 133 (1037)
Q Consensus 98 ~i~~~~~~~---~~~~~~~L~~L~L~~n~i~~~~~~~~~ 133 (1037)
.+....++. .+.....+++|.|++|++....++.+.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig 141 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG 141 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH
Confidence 776544322 345556666677777766655544443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8.4e-06 Score=58.46 Aligned_cols=36 Identities=39% Similarity=0.671 Sum_probs=22.1
Q ss_pred CCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCC
Q 001653 860 RIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 896 (1037)
Q Consensus 860 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~ 896 (1037)
+|++|++++|+|+ .+|..++++++|+.||+++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 45555666666666666666665
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=5.6e-07 Score=79.33 Aligned_cols=116 Identities=25% Similarity=0.240 Sum_probs=76.9
Q ss_pred CCCCCEEECcCCcCcccCCCCCC-cCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEe
Q 001653 657 RDSLKILDLSNNSIFGTLPSCFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLL 735 (1037)
Q Consensus 657 ~~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 735 (1037)
...|+..+|++|.+....+.... ++.++.+++++|+++..+. .+..++.|+.|+++.|.+. ..|..+..+.++-+|+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe-E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE-ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH-HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34455566666666533322222 4567777777777775444 4888888888888888887 5677777788888888
Q ss_pred cccccccccCchhhcCCCCccEEEccCCcCcCcCCCcccc
Q 001653 736 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVN 775 (1037)
Q Consensus 736 L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~ 775 (1037)
..+|.+. .+|.++..-...-..++.++++.+..|..+..
T Consensus 130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred CCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 8888877 66665544444455566777777776655443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.7e-05 Score=55.86 Aligned_cols=37 Identities=32% Similarity=0.658 Sum_probs=32.7
Q ss_pred cccEEEccCCcccccCCccccCcCCCCEEEcCCCcccc
Q 001653 836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG 873 (1037)
Q Consensus 836 ~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~ 873 (1037)
.|+.|++++|+|+ .+|.+++++++|+.|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 6889999999999 688889999999999999999994
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=1.2e-05 Score=95.12 Aligned_cols=152 Identities=22% Similarity=0.277 Sum_probs=91.0
Q ss_pred cccceecccccccccCccchhccccccCccceecccCCCCCCCccccccccccccccEEEccCCCCCCCcchhhcCCCCC
Q 001653 215 KNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSL 294 (1037)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 294 (1037)
.+|++|++++.+ .....|...++..+|+|++|.+.+-.+... .+.....++|+|..||+|+++++.. ..++++++|
T Consensus 122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 467777776633 334566666777788888888877655422 2334455678888888888877753 457777888
Q ss_pred CEEECcCCccCc-CCCccccCCCCCCEEECcCCCCCCCc------chhccCCCCCCEEEccCCcCCcccChhhhcCCCCC
Q 001653 295 QVLYASSNQLTG-NISPGLCELVLLRKLYIDNNDLRGSL------PLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSI 367 (1037)
Q Consensus 295 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 367 (1037)
++|.+.+-.+.. ..-..+.+|++|++||+|........ -+.-..+|+|+.||.|+..+.+.+-...+..-++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 887777665553 11124566777777777776543221 12223466777777776666554433233333444
Q ss_pred CEE
Q 001653 368 EEL 370 (1037)
Q Consensus 368 ~~L 370 (1037)
+.+
T Consensus 278 ~~i 280 (699)
T KOG3665|consen 278 QQI 280 (699)
T ss_pred hhh
Confidence 433
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=8.3e-05 Score=80.81 Aligned_cols=57 Identities=12% Similarity=0.262 Sum_probs=32.1
Q ss_pred CCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCc-----C-CCcCcccccCCCCCCeEecCCCcc
Q 001653 859 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL-----L-HGKIPPQLIVLNTLEVFKVAYNNL 919 (1037)
Q Consensus 859 ~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~-----l-~~~ip~~~~~l~~L~~l~ls~N~l 919 (1037)
++|+.|+++++... ..|+.+. .+|+.|+++.|. + .+.+|+.+ .+.....+.++.+.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHh
Confidence 46777777777655 3444443 577777777663 1 23455555 455555555555544
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=1.8e-05 Score=93.87 Aligned_cols=158 Identities=22% Similarity=0.272 Sum_probs=114.5
Q ss_pred CCCcceEeCCCCcCC-Ccchhcc-CCCCCCcEeeCCCCcCCCccCccccCCCCCCcEEECcCCccCcccccccccccccc
Q 001653 37 LTNLKFLYLNDNHFN-NSIFSSL-GGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKL 114 (1037)
Q Consensus 37 l~~L~~L~Ls~n~l~-~~~~~~l-~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L 114 (1037)
-.+|++||+++...- ..-|..+ .-+++|++|.+++-.+...--...+.++++|..||+|+++++.+ .....+++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccH
Confidence 358999999986542 2223333 45699999999998775432234678899999999999998876 677889999
Q ss_pred ceecccCCCCcccCCCchhhhcCCCCcccEEecccccccccc--c---hhhcccCCCCcEEEccCCcccchhhhhhhccc
Q 001653 115 NTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTV--V---NQKLHNFTNLEELILDESDLHVSQLLQSIASF 189 (1037)
Q Consensus 115 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~---~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l 189 (1037)
+.|.+.+-.+.+ ..-...+..+++|+.||+|........ . .+.-..+|+|+.||.+++++...-+-..+...
T Consensus 198 q~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 198 QVLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred HHHhccCCCCCc---hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 999888877764 233456788999999999987543221 1 12234588999999999988776666666777
Q ss_pred ccchhhccccc
Q 001653 190 TSLKHLSMQDC 200 (1037)
Q Consensus 190 ~~L~~L~l~~~ 200 (1037)
|+|+.+...+|
T Consensus 275 ~~L~~i~~~~~ 285 (699)
T KOG3665|consen 275 PNLQQIAALDC 285 (699)
T ss_pred ccHhhhhhhhh
Confidence 88887765554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.59 E-value=8e-05 Score=70.90 Aligned_cols=107 Identities=25% Similarity=0.309 Sum_probs=64.7
Q ss_pred CCcEeeCCCCcCCCccCccccCCCCCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcc
Q 001653 63 SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSL 142 (1037)
Q Consensus 63 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L 142 (1037)
....+||++|.+. .++ .|..+++|.+|.+++|.|..+. +.....+++++.|.|.+|+|..+.+ ..-+..||+|
T Consensus 43 ~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGD---LDPLASCPKL 115 (233)
T ss_pred ccceecccccchh-hcc--cCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhh---cchhccCCcc
Confidence 4455666666664 222 4566666666666666666654 4445555666666666666654432 2346677778
Q ss_pred cEEeccccccccccc--hhhcccCCCCcEEEccCCc
Q 001653 143 KTLYLSHTKFKGTVV--NQKLHNFTNLEELILDESD 176 (1037)
Q Consensus 143 ~~L~L~~n~~~~~~~--~~~l~~l~~L~~L~L~~~~ 176 (1037)
++|.+-+|+...... .-.+..+++|+.||++.-.
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 888877776543211 2345677888888876654
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00018 Score=68.49 Aligned_cols=82 Identities=30% Similarity=0.396 Sum_probs=39.1
Q ss_pred CCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhcccCCCC
Q 001653 88 NLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNL 167 (1037)
Q Consensus 88 ~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L 167 (1037)
+...+||+.|.+... ..+..+..|..|.++.|.|+.+++. --..+++|++|.|.+|.+.......-+..+|.|
T Consensus 43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred ccceecccccchhhc---ccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 445556666654432 3444555555555555555544321 112234555555555554433333334445555
Q ss_pred cEEEccCCc
Q 001653 168 EELILDESD 176 (1037)
Q Consensus 168 ~~L~L~~~~ 176 (1037)
++|.+-+|+
T Consensus 116 ~~Ltll~Np 124 (233)
T KOG1644|consen 116 EYLTLLGNP 124 (233)
T ss_pred ceeeecCCc
Confidence 555544444
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.41 E-value=0.00047 Score=75.10 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=40.9
Q ss_pred CCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEE
Q 001653 561 CFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYII 640 (1037)
Q Consensus 561 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 640 (1037)
+.+++.|++++|.++.. |. -.++|+.|.+++|.-...+|+.+ .++|+.|++++|.-...+| ++|+.|+
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEE
Confidence 67788888888776643 21 12357777777654434555443 2466777777663222333 2355555
Q ss_pred CCCCc
Q 001653 641 MPNNN 645 (1037)
Q Consensus 641 L~~n~ 645 (1037)
+..+.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 55444
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.34 E-value=0.00031 Score=65.46 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=18.0
Q ss_pred CCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEc
Q 001653 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILAL 569 (1037)
Q Consensus 512 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L 569 (1037)
+++|+.+.+.. .+.......|.++++|+.+.+.++ +. .++...+.++.+++.+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITF 65 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccc
Confidence 33444444432 233233334444444444444442 33 344444444434444444
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.29 E-value=0.00042 Score=64.58 Aligned_cols=123 Identities=21% Similarity=0.263 Sum_probs=55.2
Q ss_pred ccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCC
Q 001653 531 SSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCY 610 (1037)
Q Consensus 531 ~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 610 (1037)
..|.++++|+.+.+.. .+. .++...|.++.+|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4566777777777764 454 666666766767777777664 5555555566666666666654 33333344556666
Q ss_pred CCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCC
Q 001653 611 MLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSL 660 (1037)
Q Consensus 611 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 660 (1037)
+|+.+++..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666666554 433344455555 666666654 3333444555555444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00018 Score=71.78 Aligned_cols=86 Identities=24% Similarity=0.470 Sum_probs=39.2
Q ss_pred CCCcceEeCCCCcCCCcchhccCCCCCCcEeeCCCC--cCCCccCccccCCCCCCcEEECcCCccCcccccccccccccc
Q 001653 37 LTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADN--RLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKL 114 (1037)
Q Consensus 37 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L 114 (1037)
+..|+.|.+.+..++. ...+-.|++||+|.++.| ++.+.++. ...++++|++|++++|++..+.-......+.+|
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3444444444444443 233445555555555555 33333333 333445555555555555433222233333444
Q ss_pred ceecccCCCCc
Q 001653 115 NTLYLGGSGIP 125 (1037)
Q Consensus 115 ~~L~L~~n~i~ 125 (1037)
..|++..|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 44444444333
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=5.6e-05 Score=75.18 Aligned_cols=103 Identities=28% Similarity=0.404 Sum_probs=73.8
Q ss_pred CCCCCcEeeCCCCcCCCccCccccCCCCCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCC
Q 001653 60 GLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSL 139 (1037)
Q Consensus 60 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l 139 (1037)
.+.+.+.|+..+|.+. .|. .+.+|+-|+.|.||-|.|+.+ .-+..|+.|+.|+|..|.|.++++ +..+.++
T Consensus 17 dl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldE---L~YLknl 87 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDE---LEYLKNL 87 (388)
T ss_pred HHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHH---HHHHhcC
Confidence 3456677788888876 343 467788888888888888776 456778888888888888876543 4567888
Q ss_pred CcccEEeccccccccccch----hhcccCCCCcEEE
Q 001653 140 PSLKTLYLSHTKFKGTVVN----QKLHNFTNLEELI 171 (1037)
Q Consensus 140 ~~L~~L~L~~n~~~~~~~~----~~l~~l~~L~~L~ 171 (1037)
|+|++|.|..|...+.... ..+.-+|+|++||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888888888876655442 3456677777664
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00032 Score=70.14 Aligned_cols=90 Identities=26% Similarity=0.376 Sum_probs=68.6
Q ss_pred CccCCCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCC--cCCCcchhccCCCCCCcEeeCCCCcCCCccCcccc
Q 001653 6 FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDN--HFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGL 83 (1037)
Q Consensus 6 f~~l~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l 83 (1037)
+..+..|+.|++.+..++ ....+..+++|++|.+|.| .+.+.++.....+++|++|++++|+++..-....+
T Consensus 39 ~d~~~~le~ls~~n~glt------t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT------TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccchhhhhhhcccee------ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 345666777777766665 2345778999999999999 66666676677789999999999999732223457
Q ss_pred CCCCCCcEEECcCCccCc
Q 001653 84 NSLSNLEELDMTGNAIEN 101 (1037)
Q Consensus 84 ~~l~~L~~LdLs~n~i~~ 101 (1037)
.++.+|..||+.+|....
T Consensus 113 ~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhcchhhhhcccCCccc
Confidence 888999999999997654
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.91 E-value=0.00032 Score=82.61 Aligned_cols=133 Identities=26% Similarity=0.243 Sum_probs=65.3
Q ss_pred CCCCCcEeeCCCCcCCCccC-ccccCCCCCCcEEECcCC-ccCcc---ccccccccccccceecccCCC-CcccCCCchh
Q 001653 60 GLSSLRHLSLADNRLNGSID-IKGLNSLSNLEELDMTGN-AIENL---VVPKDFRGLRKLNTLYLGGSG-IPRIDGSKVL 133 (1037)
Q Consensus 60 ~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~LdLs~n-~i~~~---~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~ 133 (1037)
.++.|+.|.+..+.-..... ......+++|++|+++++ ..... ........++.++.|+++++. ++ ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is----d~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT----DIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC----chhH
Confidence 35666777666664332211 124456677777777652 11111 012233444566666666665 33 2222
Q ss_pred hhcC-CCCcccEEeccccc-cccccchhhcccCCCCcEEEccCCccc-chhhhhhhcccccchhhc
Q 001653 134 QSIG-SLPSLKTLYLSHTK-FKGTVVNQKLHNFTNLEELILDESDLH-VSQLLQSIASFTSLKHLS 196 (1037)
Q Consensus 134 ~~l~-~l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~l~~l~~L~~L~ 196 (1037)
..++ .+++|++|.+.+|. +++........+++.|++|+++++... ...+......+++++.|.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 2222 26666766666665 455544455556666666666666443 222222333344444443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.70 E-value=0.00029 Score=83.03 Aligned_cols=16 Identities=31% Similarity=0.225 Sum_probs=8.3
Q ss_pred hhcCCCCcccEEeccc
Q 001653 134 QSIGSLPSLKTLYLSH 149 (1037)
Q Consensus 134 ~~l~~l~~L~~L~L~~ 149 (1037)
.....+++|++|++++
T Consensus 208 ~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSG 223 (482)
T ss_pred HHHhhCchhheecccC
Confidence 3444555555555554
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.38 E-value=9e-05 Score=84.11 Aligned_cols=191 Identities=24% Similarity=0.264 Sum_probs=127.4
Q ss_pred CCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCcCCCc----chhccCCC-CCCcEeeCCCCcCCCc----cCccc
Q 001653 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNS----IFSSLGGL-SSLRHLSLADNRLNGS----IDIKG 82 (1037)
Q Consensus 12 L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~~~~~----~~~~~ 82 (1037)
++.|.|.+|.+..........++....+|..|++++|.+.+. +-..+... ..|++|++..|.+++. +. +.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~-~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA-AV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH-HH
Confidence 677888888887776666777778888888888888887643 33344444 6677888888877644 22 35
Q ss_pred cCCCCCCcEEECcCCccCccc---cccc----cccccccceecccCCCCcccCCCchhhhcCCCCc-ccEEecccccccc
Q 001653 83 LNSLSNLEELDMTGNAIENLV---VPKD----FRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPS-LKTLYLSHTKFKG 154 (1037)
Q Consensus 83 l~~l~~L~~LdLs~n~i~~~~---~~~~----~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~-L~~L~L~~n~~~~ 154 (1037)
+.....++.+|++.|.+.... .+.. +.....++.|++++|.++......+-..+...++ ++.|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 666778888888888764221 1122 2346777888888888875554445555666666 7778888887754
Q ss_pred ccch---hhcccC-CCCcEEEccCCcccchh---hhhhhcccccchhhcccccccc
Q 001653 155 TVVN---QKLHNF-TNLEELILDESDLHVSQ---LLQSIASFTSLKHLSMQDCVLK 203 (1037)
Q Consensus 155 ~~~~---~~l~~l-~~L~~L~L~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~ 203 (1037)
.... ..+... ..++.++++.|.+...+ +.+.+..++.++.+.+..+...
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3221 233344 56688888888776543 5666677778888888777554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00024 Score=70.88 Aligned_cols=85 Identities=24% Similarity=0.321 Sum_probs=53.9
Q ss_pred CCCCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhcccC
Q 001653 85 SLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNF 164 (1037)
Q Consensus 85 ~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l 164 (1037)
.+.+.+.|+.-++.++++ .....++.|+.|.|+-|.|+++. .+..|++|++|+|..|.+.+.....-+.++
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 345666677777777665 45566677777777777766443 356677777777777766554444556666
Q ss_pred CCCcEEEccCCccc
Q 001653 165 TNLEELILDESDLH 178 (1037)
Q Consensus 165 ~~L~~L~L~~~~~~ 178 (1037)
++|+.|.|..|.+.
T Consensus 88 psLr~LWL~ENPCc 101 (388)
T KOG2123|consen 88 PSLRTLWLDENPCC 101 (388)
T ss_pred chhhhHhhccCCcc
Confidence 66666666666543
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.00 E-value=0.00034 Score=79.52 Aligned_cols=188 Identities=21% Similarity=0.261 Sum_probs=113.7
Q ss_pred cceEeCCCCcCCCc----chhccCCCCCCcEeeCCCCcCCCccCc----cccCCC-CCCcEEECcCCccCcccc---ccc
Q 001653 40 LKFLYLNDNHFNNS----IFSSLGGLSSLRHLSLADNRLNGSIDI----KGLNSL-SNLEELDMTGNAIENLVV---PKD 107 (1037)
Q Consensus 40 L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~~~----~~l~~l-~~L~~LdLs~n~i~~~~~---~~~ 107 (1037)
+..|.|.+|.+.+. +...+.....|+.|++++|.+.+. .. +.+... ..|++|++..|.+.+..- ...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~-g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE-GARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH-hHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 77788888877653 445667778888888888887632 11 123333 456777777777665422 223
Q ss_pred cccccccceecccCCCCcccCCCchhhhcC----CCCcccEEeccccccccccc---hhhcccCCC-CcEEEccCCcccc
Q 001653 108 FRGLRKLNTLYLGGSGIPRIDGSKVLQSIG----SLPSLKTLYLSHTKFKGTVV---NQKLHNFTN-LEELILDESDLHV 179 (1037)
Q Consensus 108 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~----~l~~L~~L~L~~n~~~~~~~---~~~l~~l~~-L~~L~L~~~~~~~ 179 (1037)
+.....++.++++.|.+...........+. ...++++|.+.+|.++.... ...+...+. +.++++..|...+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 344666777788888775443333334444 46778888888887653322 234455555 6667787777665
Q ss_pred hh---hhhhhccc-ccchhhcccccccccccC---ccccccccccceecccccccc
Q 001653 180 SQ---LLQSIASF-TSLKHLSMQDCVLKGALH---GQDFLKFKNLEYLDMGWVQVD 228 (1037)
Q Consensus 180 ~~---~~~~l~~l-~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~ 228 (1037)
.. ....+... +.+++++++.|.+...-. ...+..++.++.+.++.+++.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 43 23333444 566788888886654322 123455667888888766543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.82 E-value=0.0039 Score=37.00 Aligned_cols=19 Identities=58% Similarity=0.901 Sum_probs=8.8
Q ss_pred CCEEEcCCCccccchhhhhh
Q 001653 861 IHALNLSHNNLTGTIPTTFS 880 (1037)
Q Consensus 861 L~~L~Ls~N~l~~~ip~~~~ 880 (1037)
|++|||++|+|+ .+|++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444555555554 4444443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.56 E-value=0.004 Score=36.96 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=14.6
Q ss_pred cCCeEeCCCCcCCCcCcccccC
Q 001653 884 QIESLDLSYNLLHGKIPPQLIV 905 (1037)
Q Consensus 884 ~L~~LdLs~N~l~~~ip~~~~~ 905 (1037)
+|++||||+|+|+ .+|++|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677788888777 66666544
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.28 E-value=0.01 Score=57.96 Aligned_cols=88 Identities=16% Similarity=0.096 Sum_probs=66.4
Q ss_pred CCccCCCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCcCCCcchhccCCCCCCcEeeCCCCcCCCccCccccC
Q 001653 5 LFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLN 84 (1037)
Q Consensus 5 ~f~~l~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 84 (1037)
-+..++..++||++.|++.. .-..++.++.|..||++.|++. ..|..++....++++++..|..+ ..|. .++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-----~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~ 108 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-----LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQK 108 (326)
T ss_pred hhhccceeeeehhhhhHHHh-----hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccc
Confidence 35577788888888887752 2234667778888888888776 56788888888888888888775 6776 788
Q ss_pred CCCCCcEEECcCCccC
Q 001653 85 SLSNLEELDMTGNAIE 100 (1037)
Q Consensus 85 ~l~~L~~LdLs~n~i~ 100 (1037)
+.++++++++..+.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 8888888888887643
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.87 E-value=0.017 Score=56.51 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=70.8
Q ss_pred cccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecC
Q 001653 836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA 915 (1037)
Q Consensus 836 ~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls 915 (1037)
..+.||++.|++. ..-..|.-++.+..||+|.|++. ..|..++.+..+..+++..|..+ ..|.++...+.++++++-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 5678999999987 55666777888999999999998 78899999999999999999887 678899999999999999
Q ss_pred CCcce
Q 001653 916 YNNLS 920 (1037)
Q Consensus 916 ~N~l~ 920 (1037)
.|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88764
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.73 E-value=0.33 Score=30.09 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=8.1
Q ss_pred ccCCeEeCCCCcCCC
Q 001653 883 KQIESLDLSYNLLHG 897 (1037)
Q Consensus 883 ~~L~~LdLs~N~l~~ 897 (1037)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 445555555555553
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.73 E-value=0.33 Score=30.09 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=8.1
Q ss_pred ccCCeEeCCCCcCCC
Q 001653 883 KQIESLDLSYNLLHG 897 (1037)
Q Consensus 883 ~~L~~LdLs~N~l~~ 897 (1037)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 445555555555553
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.90 E-value=0.33 Score=29.45 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=11.7
Q ss_pred CCCCEEEcCCCccccchhhhhh
Q 001653 859 TRIHALNLSHNNLTGTIPTTFS 880 (1037)
Q Consensus 859 ~~L~~L~Ls~N~l~~~ip~~~~ 880 (1037)
++|+.|+|++|.|++..+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4566666666666655555443
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.85 E-value=0.37 Score=26.43 Aligned_cols=13 Identities=62% Similarity=0.802 Sum_probs=4.5
Q ss_pred CCCEEEeeccccc
Q 001653 538 MLERLDISNNQLT 550 (1037)
Q Consensus 538 ~L~~L~L~~n~l~ 550 (1037)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.59 E-value=0.47 Score=29.42 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=14.5
Q ss_pred cCCCCEEEcCCCccccchhhhh
Q 001653 858 LTRIHALNLSHNNLTGTIPTTF 879 (1037)
Q Consensus 858 l~~L~~L~Ls~N~l~~~ip~~~ 879 (1037)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567778888888875444444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.59 E-value=0.47 Score=29.42 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=14.5
Q ss_pred cCCCCEEEcCCCccccchhhhh
Q 001653 858 LTRIHALNLSHNNLTGTIPTTF 879 (1037)
Q Consensus 858 l~~L~~L~Ls~N~l~~~ip~~~ 879 (1037)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567778888888875444444
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.34 E-value=0.28 Score=47.54 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=14.7
Q ss_pred ccchhhcccccccccccCccccccccccceeccc
Q 001653 190 TSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMG 223 (1037)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 223 (1037)
++|+.|+++.|...+......+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 3444444444433333333334444444444443
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.37 E-value=0.24 Score=48.07 Aligned_cols=87 Identities=21% Similarity=0.217 Sum_probs=62.4
Q ss_pred ccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhcc-cCCCCcEEEccCCcccchhhhhhhccc
Q 001653 111 LRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLH-NFTNLEELILDESDLHVSQLLQSIASF 189 (1037)
Q Consensus 111 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~l~~l 189 (1037)
-...+.++-+++.|. ..-.+.+..++.++.|.+.+|.--+....+.++ -.++|+.|++++|.-..+.....+..+
T Consensus 100 ~~~IeaVDAsds~I~----~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIM----YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred cceEEEEecCCchHH----HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 344566677777776 455678888999999999888643332222333 357899999998876666777888889
Q ss_pred ccchhhcccccc
Q 001653 190 TSLKHLSMQDCV 201 (1037)
Q Consensus 190 ~~L~~L~l~~~~ 201 (1037)
++|+.|.+.+-.
T Consensus 176 knLr~L~l~~l~ 187 (221)
T KOG3864|consen 176 KNLRRLHLYDLP 187 (221)
T ss_pred hhhHHHHhcCch
Confidence 999998887643
No 85
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=78.63 E-value=2.9 Score=28.80 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=14.8
Q ss_pred EEEeeehhhHHHHHHHHHHhhhhhhhhh
Q 001653 980 LITFTVSYGIVIIGIIGVLYINPYWRRR 1007 (1037)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1037)
.++++++.-+++++++..+++..||||.
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEEecc
Confidence 4555555555555555445555556653
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.00 E-value=2.1 Score=26.55 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=10.9
Q ss_pred CccCCeEeCCCCcCC
Q 001653 882 LKQIESLDLSYNLLH 896 (1037)
Q Consensus 882 l~~L~~LdLs~N~l~ 896 (1037)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777888888775
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.31 E-value=14 Score=40.95 Aligned_cols=61 Identities=23% Similarity=0.151 Sum_probs=36.7
Q ss_pred cccEEEccCCCCCCCcc---hhhcCCCCCCEEECcCCccCc----CCCccccCCCCCCEEECcCCCCC
Q 001653 269 HLQGLYIRDNDLRDGLP---WCLANMTSLQVLYASSNQLTG----NISPGLCELVLLRKLYIDNNDLR 329 (1037)
Q Consensus 269 ~L~~L~L~~n~i~~~~~---~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~ 329 (1037)
-+..+.++.+......- .....-+.+..|++++|.... .+|.....-..++....+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 46677777777654222 233445678899999987653 23444444445666666666543
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=66.88 E-value=3.8 Score=55.54 Aligned_cols=36 Identities=17% Similarity=0.044 Sum_probs=24.4
Q ss_pred eCCCCcCCCcCcccccCCCCCCeEecCCCcceecCC
Q 001653 889 DLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 924 (1037)
Q Consensus 889 dLs~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~ip 924 (1037)
||++|+|+...+..|..+++|+.|+|++|++.|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 567777776666667777777777777776666543
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.17 E-value=6.9 Score=24.74 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=9.7
Q ss_pred CCCCEEeCCCCccc
Q 001653 10 QQLESLDLSWNNIA 23 (1037)
Q Consensus 10 ~~L~~L~L~~~~i~ 23 (1037)
++|++|||++|.|+
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777775
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=58.15 E-value=5.6 Score=24.60 Aligned_cols=12 Identities=50% Similarity=0.761 Sum_probs=5.6
Q ss_pred CCEEEcCCCccc
Q 001653 861 IHALNLSHNNLT 872 (1037)
Q Consensus 861 L~~L~Ls~N~l~ 872 (1037)
|+.|+.++|+|+
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444444444444
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=38.16 E-value=94 Score=34.94 Aligned_cols=288 Identities=21% Similarity=0.110 Sum_probs=134.6
Q ss_pred CCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCcCCCcchhcc---CCCCCCcEeeCCCCcCCCccCccccCC-
Q 001653 10 QQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSL---GGLSSLRHLSLADNRLNGSIDIKGLNS- 85 (1037)
Q Consensus 10 ~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~n~~~~~~~~~~l~~- 85 (1037)
..++++|++.|.+....+-..++.... +.++.|..+......+ ..=..+.+++++.|.....+|. .+..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p------l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~-~~n~~ 237 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP------LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR-TLNKK 237 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc------cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh-HHHHh
Confidence 346788999888765444333332222 5556665543211111 1113466777777776655553 2222
Q ss_pred --CCCCcEEECcCCccC--ccccccccccccccceecccCCCCcccCCCchh----hhcCCCCcccEEeccccccccccc
Q 001653 86 --LSNLEELDMTGNAIE--NLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVL----QSIGSLPSLKTLYLSHTKFKGTVV 157 (1037)
Q Consensus 86 --l~~L~~LdLs~n~i~--~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~----~~l~~l~~L~~L~L~~n~~~~~~~ 157 (1037)
-.-++.+|.+...+. ...-+..+...+.+...+++.|..+.-.+.+.. +.+..-+++ +|++..+....+.+
T Consensus 238 a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~l 316 (553)
T KOG4242|consen 238 AGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKL 316 (553)
T ss_pred hhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhh
Confidence 224666666665432 111133445555666666666655433322222 234444566 66666654433222
Q ss_pred hhhcccC---CCC--cEEEccCCcccchhhhhhhcccccchhhcccccccccccC-ccccccccccceeccccccc--cc
Q 001653 158 NQKLHNF---TNL--EELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALH-GQDFLKFKNLEYLDMGWVQV--DV 229 (1037)
Q Consensus 158 ~~~l~~l---~~L--~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~--~~ 229 (1037)
...+-.+ ... -.+++..|........+.-..-..++++.+.++...+... ...+..-+..+.++++.-.. ..
T Consensus 317 ks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm 396 (553)
T KOG4242|consen 317 KSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVM 396 (553)
T ss_pred hhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceec
Confidence 2111000 011 1223333333222222222222347777777765443322 11344456667776653221 00
Q ss_pred -Cccch---hccccccCccceecccCCCCCCC-ccccccccccccccEEEccCCCCCC----CcchhhcCCCCCCEEECc
Q 001653 230 -NTNFL---QIVGESMPSLNFLSLTNSSLNKH-TILDQGLCQLVHLQGLYIRDNDLRD----GLPWCLANMTSLQVLYAS 300 (1037)
Q Consensus 230 -~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~Ls 300 (1037)
..... ........-+..+.++.+..... .........-+.+..|++++|.... .+|.....-..++....+
T Consensus 397 ~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds 476 (553)
T KOG4242|consen 397 DSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDS 476 (553)
T ss_pred cccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCC
Confidence 00000 01112334566677777765421 1112233445789999999997654 234444444455655555
Q ss_pred CCccC
Q 001653 301 SNQLT 305 (1037)
Q Consensus 301 ~n~l~ 305 (1037)
.|...
T Consensus 477 ~n~p~ 481 (553)
T KOG4242|consen 477 LNLPE 481 (553)
T ss_pred CCCcc
Confidence 55443
No 92
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=37.28 E-value=56 Score=32.30 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=14.5
Q ss_pred ceEEEEeeehhhHHHHHHHHHHhhhhhhh
Q 001653 977 DSFLITFTVSYGIVIIGIIGVLYINPYWR 1005 (1037)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1037)
..++++++.|+++++++|++++++ |++|
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~v-R~CR 64 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLV-RYCR 64 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHH-HHHh
Confidence 344555555655555555555554 4343
No 93
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=34.29 E-value=13 Score=32.94 Aligned_cols=32 Identities=22% Similarity=0.063 Sum_probs=23.5
Q ss_pred EeeehhhHHHHHHHHHHhhhhhhhhhhhhhhH
Q 001653 982 TFTVSYGIVIIGIIGVLYINPYWRRRWFYLVE 1013 (1037)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1037)
.+.+++.+++++..+++++.+|.||+++..-|
T Consensus 104 ~~il~il~~i~is~~~~~~yr~~r~~~~~~~~ 135 (139)
T PHA03099 104 PGIVLVLVGIIITCCLLSVYRFTRRTKLPLQD 135 (139)
T ss_pred hHHHHHHHHHHHHHHHHhhheeeecccCchhh
Confidence 34456666667777778888999999887665
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.98 E-value=21 Score=40.71 Aligned_cols=65 Identities=18% Similarity=0.093 Sum_probs=31.8
Q ss_pred ccccccEEEccCCCCCCCc--chhhcCCCCCCEEECcCCccCcCCCccccC--CCCCCEEECcCCCCCC
Q 001653 266 QLVHLQGLYIRDNDLRDGL--PWCLANMTSLQVLYASSNQLTGNISPGLCE--LVLLRKLYIDNNDLRG 330 (1037)
Q Consensus 266 ~l~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~ 330 (1037)
+.+.+..+.|++|++.... ..--...|+|+.|+|++|...-.....+.+ ...|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3445555555555544311 111223466777777777221111122222 2357777888887753
No 95
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=27.64 E-value=35 Score=31.78 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=5.9
Q ss_pred EEEeeehhhHHHH
Q 001653 980 LITFTVSYGIVII 992 (1037)
Q Consensus 980 ~~~~~~~~~~~~~ 992 (1037)
++++++|+++.++
T Consensus 51 VIGvVVGVGg~il 63 (154)
T PF04478_consen 51 VIGVVVGVGGPIL 63 (154)
T ss_pred EEEEEecccHHHH
Confidence 4555555443333
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=27.21 E-value=43 Score=20.58 Aligned_cols=12 Identities=33% Similarity=0.301 Sum_probs=6.5
Q ss_pred CCcceEeCCCCc
Q 001653 38 TNLKFLYLNDNH 49 (1037)
Q Consensus 38 ~~L~~L~Ls~n~ 49 (1037)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.08 E-value=41 Score=46.38 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=26.4
Q ss_pred EccCCcccccCCccccCcCCCCEEEcCCCccc
Q 001653 841 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLT 872 (1037)
Q Consensus 841 dLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 872 (1037)
||++|+|+-..+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68889998666677888888999999998775
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.49 E-value=46 Score=38.06 Aligned_cols=12 Identities=42% Similarity=0.454 Sum_probs=6.3
Q ss_pred CCCCCEEEccCc
Q 001653 561 CFSLEILALSNN 572 (1037)
Q Consensus 561 ~~~L~~L~L~~n 572 (1037)
.++|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 445555555555
No 99
>PF15102 TMEM154: TMEM154 protein family
Probab=21.39 E-value=44 Score=30.89 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhhhhhh
Q 001653 991 IIGIIGVLYINPYWRR 1006 (1037)
Q Consensus 991 ~~~~~~~~~~~~~~~~ 1006 (1037)
++.++++++++|+||.
T Consensus 72 Ll~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHheeEEeeccc
Confidence 3334444444455543
Done!