Query 001653
Match_columns 1037
No_of_seqs 482 out of 5199
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 15:49:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001653.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_952-956//hhsearch_pdb/001653hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 623.1 49.1 658 260-956 69-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 570.7 42.5 430 429-921 308-741 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 488.8 50.3 571 263-925 44-627 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 474.4 52.1 585 258-954 17-634 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 457.8 38.7 554 266-955 22-591 (844)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 441.2 44.5 539 272-950 8-567 (844)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 438.0 43.0 523 269-925 34-565 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 429.9 44.0 531 272-948 16-565 (606)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 422.5 40.3 515 268-925 32-563 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 418.0 43.6 543 269-954 12-569 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=623.10 Aligned_cols=658 Identities=29% Similarity=0.405 Sum_probs=446.6
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCHHC-
Q ss_conf 431002556542798368877988342101899997998768856767870--10079999799786899999820102-
Q 001653 260 LDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISP--GLCELVLLRKLYIDNNDLRGSLPLCL- 336 (1037)
Q Consensus 260 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~- 336 (1037)
++..+..+++|+.++++.+.+.. .+..+..+++|++|++++|.+.+.+|. .++.+++|++|++++|.+.+..|..+
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 147 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred CCHHHHCCCCCCCCCCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 69657316802246786888678-70332457889989898985787078967872788999898968826774797785
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHH---HCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 499999999765876776459111---15999898997547866632469312258988643318775534223367798
Q 001653 337 ANLTSLRVLDVSYNQLTENISSSS---LMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTP 413 (1037)
Q Consensus 337 ~~l~~L~~L~Ls~n~~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~ 413 (1037)
.++++|++|++++|.+.+..+. . +..+++|++|++++|.+. .... +..+
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~-~~~~---~~~l----------------------- 199 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKIS-GDVD---VSRC----------------------- 199 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEE-SCCB---CTTC-----------------------
T ss_pred CCCCCCCEEECCCCCCCCCCCH-HHHHHCCCCCCCEEECCCCCCC-CCCC---CCCC-----------------------
T ss_conf 6388999898979835885871-5566435898898989788034-6578---4547-----------------------
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 63221997326446998743320599988998579898665764676339987699855874566785583378875799
Q 001653 414 KFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATL 493 (1037)
Q Consensus 414 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 493 (1037)
.+|+.|++++|.+.+.+|. +..+++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..+.. .+++|+.|
T Consensus 200 -~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 200 -VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp -TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred -CCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHH-HCCCCCCEEECCCCCCCCCCCCC--CCCCCCEE
T ss_conf -8689898928827887711-1269999989794885878165777-44888898989888665716724--36878989
Q ss_pred ECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf 85688685458734440798975998758868877980100778988998006625654535675228999889831760
Q 001653 494 DVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR 573 (1037)
Q Consensus 494 ~l~~n~l~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~L~~n~ 573 (1037)
++++|.+.+.+|..++..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+.+|...+..+++|++|++++|.
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 79178557725888884468688998968967784236775587766778978852573797887248888788484784
Q ss_pred CCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 4423753444999-9768977687379988911107--898978962487168879800489999978977799575677
Q 001653 574 LQGHIFSEKFNLT-NLMTLQLDGNNFIGEIPESLSK--CYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPI 650 (1037)
Q Consensus 574 l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 650 (1037)
+.+..+..+..++ +|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..|..++.+++|+.|++++|++.+..
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred CCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 37623098986322771998627874787676665332477618989778465424877756898798989588466854
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCC
Q ss_conf 51002899989998848857546998878-57667587247504673213221999834998579727888851004999
Q 001653 651 PIEFCQRDSLKILDLSNNSIFGTLPSCFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLP 729 (1037)
Q Consensus 651 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~ 729 (1037)
|..+..+++|+.|++++|.+.+..|..+. +++|+.|++++|++++..+..+..+++|+.|++++|++++.+|.++..++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 67774499889898978815471897882877732999019951375887881699899897539951896876885689
Q ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 8868864452224567420017997639985688286768976535886767788878862000124102345789999-
Q 001653 730 QLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQS- 808 (1037)
Q Consensus 730 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 808 (1037)
+|++|++++|++.+.+|..+..+++|+.+++++|+++|.+|..++...-.... ...................|.....
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA-NFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC-STTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99989897894337488777088989989898884688279578604212232-01345421111344432222332221
Q ss_pred --CCCC-------------CCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf --9999-------------9651388862475222233212465589955884556577001276878799767874421
Q 001653 809 --SPPM-------------GKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG 873 (1037)
Q Consensus 809 --~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 873 (1037)
+... .....-.+.... ......++.++.|||++|+++|.+|..++.++.|+.|+|++|+++|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~---~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHT---SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEEC---CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCEECCCC---CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 0013556323200232110011331004627---4334033566579785880155587788414157878486880388
Q ss_pred CHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02565505755896728888287769600007999994764788361109999878887864236888888999989999
Q 001653 874 TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCN 953 (1037)
Q Consensus 874 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~~~~~c~ 953 (1037)
.+|..|+++++|+.||||+|+++|.+|..+..+++|+++|+|+|+++|.||...||.++...+|.|||++||.|+. .|.
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~ 749 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCD 749 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCC
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC-CCC
T ss_conf 7896784777899898978802386886775788789787968815560899601024897775698321088776-788
Q ss_pred CCC
Q ss_conf 999
Q 001653 954 DNG 956 (1037)
Q Consensus 954 ~~~ 956 (1037)
...
T Consensus 750 ~~~ 752 (768)
T 3rgz_A 750 PSN 752 (768)
T ss_dssp SCC
T ss_pred CCC
T ss_conf 876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=570.72 Aligned_cols=430 Identities=31% Similarity=0.415 Sum_probs=317.1
Q ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCHH
Q ss_conf 987433205999889985798986657646763399876998558745667855833788-7579985688685458734
Q 001653 429 GTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQ-KLATLDVFNNFFQGHIPVE 507 (1037)
Q Consensus 429 ~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~i~~~ 507 (1037)
+.+|..+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+.++..
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHH
T ss_conf 84236775587766778978852573797887248888788484784376230989863227719986278747876766
Q ss_pred HHHC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 4407-989759987588688779801007789889980066256545356752289998898317604423753444999
Q 001653 508 IGTY-LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLT 586 (1037)
Q Consensus 508 ~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 586 (1037)
+... +++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+..+..+..++
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH-CCCCCCEEECCCCCCCCCCCHHHCCCC
T ss_conf 6533247761898977846542487775689879898958846685467774-499889898978815471897882877
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 97689776873799889111078989789624871688798004899999789777995756775100289998999884
Q 001653 587 NLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLS 666 (1037)
Q Consensus 587 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 666 (1037)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|.+++.+++|++|++++|++.+.+|..+..+++|+.|+++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECC
T ss_conf 73299901995137588788169989989753995189687688568999989897894337488777088989989898
Q ss_pred CCCCCCCCCCCCC-CCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
Q ss_conf 8857546998878-576675872475-04673213221999834998579727888851004999886886445222456
Q 001653 667 NNSIFGTLPSCFS-PASIEQVHLSKN-KIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGE 744 (1037)
Q Consensus 667 ~n~~~~~~~~~~~-~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 744 (1037)
+|.+.+.+|..+. ...+..+.+..+ .+..................+ .+.+..+..+..++.+..+++..|.+.|.
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL---EFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE---ECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred CCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHCCCCCCCCCCCCCEECCC
T ss_conf 884688279578604212232013454211113444322223322210---01355632320023211001133100462
Q ss_pred CCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 74200179976399856882867689765358867677888788620001241023457899999999965138886247
Q 001653 745 IPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKN 824 (1037)
Q Consensus 745 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1037)
+|..+..++.|+.+|+++|+++|.+|..++.+.
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~----------------------------------------------- 656 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP----------------------------------------------- 656 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT-----------------------------------------------
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC-----------------------------------------------
T ss_conf 743340335665797858801555877884141-----------------------------------------------
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 52222332124655899558845565770012768787997678744210256550575589672888828776960000
Q 001653 825 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI 904 (1037)
Q Consensus 825 ~~~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~ 904 (1037)
.|+.|||++|.++|.+|..++.+++|+.||||+|+++|.+|..++.+++|+.||+|+|+++|.+|.. .
T Consensus 657 -----------~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~ 724 (768)
T 3rgz_A 657 -----------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-G 724 (768)
T ss_dssp -----------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-S
T ss_pred -----------CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-H
T ss_conf -----------5787848688038878967847778998989788023868867757887897879688155608996-0
Q ss_pred CCCCCCEEECCCCCCEE
Q ss_conf 79999947647883611
Q 001653 905 VLNTLEVFKVAYNNLSG 921 (1037)
Q Consensus 905 ~l~~L~~l~ls~N~l~~ 921 (1037)
....+......+|+.-|
T Consensus 725 ~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLC 741 (768)
T ss_dssp SGGGSCGGGGCSCTEEE
T ss_pred HHCCCCHHHHCCCCHHC
T ss_conf 10248977756983210
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=488.79 Aligned_cols=571 Identities=20% Similarity=0.169 Sum_probs=288.1
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCC
Q ss_conf 00255654279836887798834210189999799876885676787010079999799786899999820102499999
Q 001653 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSL 342 (1037)
Q Consensus 263 ~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 342 (1037)
.+..+++|++|++++|.+.+..+..+.++++|++|++++|.+....+..|..+++|++|++++|.+.+..+..|.++++|
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCC
T ss_conf 87178767588788996485697787406676888899985675685453038888989898996685396674156788
Q ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 99976587677645911115999898997547866632469312258988643318775534223367798632219973
Q 001653 343 RVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISL 422 (1037)
Q Consensus 343 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 422 (1037)
++|++++|.+.+..+ ..+..+++|++|++++|.+...+..... .....+|+.+++
T Consensus 124 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------------~~~~~~L~~L~L 178 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEELD------------------------IFANSSLKKLEL 178 (680)
T ss_dssp CEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHHG------------------------GGTTCEESEEEC
T ss_pred CEEECCCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCCHHHHH------------------------CCCCCCCCEEEC
T ss_conf 889898995246672-1112455677797458843652978862------------------------446663217988
Q ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH--HCCCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEECCCC
Q ss_conf 26446998743320599988998579898665764676--33998769985587456678558337887--579985688
Q 001653 423 SGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLL--ENNTNLETLLLANNSLFGSFRMPIHSHQK--LATLDVFNN 498 (1037)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n 498 (1037)
+++.+.+..+..+..+.+++.+++.++.+.......+. -..++|+.|++++|.+.+..+..+..++. |+.|++++|
T Consensus 179 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCC
T ss_conf 89825655815553223445543056646805677787775315100887457743646866751467677888778788
Q ss_pred CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf 68545873444079897599875886887798010077898899800662565453567522899988983176044237
Q 001653 499 FFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHI 578 (1037)
Q Consensus 499 ~l~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~ 578 (1037)
.+.+..+..+ ..+++|+.|++++|.+.+..+..|.++++|+.+++++|...+.++. ..+....
T Consensus 259 ~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~----------------~~lp~i~ 321 (680)
T 1ziw_A 259 NLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL----------------ASLPKID 321 (680)
T ss_dssp CCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------------------CCEEC
T ss_pred CCCCCCCCCC-CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCC----------------CCCCCCC
T ss_conf 7675680211-6741056855778856765865626788855773633132133333----------------5545438
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--CCCCCCCC--CCCCCEEECCCCCCCCCCCCCC
Q ss_conf 5344499997689776873799889111078989789624871688--79800489--9999789777995756775100
Q 001653 579 FSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFG--KIPRWLGN--LPTLQYIIMPNNNLEGPIPIEF 654 (1037)
Q Consensus 579 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~ 654 (1037)
...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..|.. .++|+.|++++|++.+..+..+
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHH
T ss_conf 65624677788887989826878855740656872898879801443235322024556867668899997776775442
Q ss_pred CCCCCCCEEECCCCCCCCCCC-CCCC-CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC--CCCCHHHCCCCC
Q ss_conf 289998999884885754699-8878-576675872475046732132219998349985797278--888510049998
Q 001653 655 CQRDSLKILDLSNNSIFGTLP-SCFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH--GSIPNRIDRLPQ 730 (1037)
Q Consensus 655 ~~~~~L~~L~l~~n~~~~~~~-~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~--~~~~~~~~~l~~ 730 (1037)
..+++|+.|++++|.+.+..+ ..+. +++|+.+++++|++.+..+..|..+++|+.|++++|.+. +..|..+..+++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 07788888867787575435755325754612784489975422764550075431011014644225667764555787
Q ss_pred CCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86886445222456742001799763998568828676897653588676778887886200012410234578999999
Q 001653 731 LNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSP 810 (1037)
Q Consensus 731 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1037)
|+.|++++|++.+..+..+..+++|+.|++++|.+++..+..+.....
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-------------------------------- 529 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI-------------------------------- 529 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC--------------------------------
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCC--------------------------------
T ss_conf 899989999877679446345534688858899730000000467741--------------------------------
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEEC
Q ss_conf 99965138886247522223321246558995588455657700127687879976787442102565505755896728
Q 001653 811 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL 890 (1037)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL 890 (1037)
.....++.|+.|+|++|++++..+..|..+++|+.|+|++|+++++.+..|.++++|+.|+|
T Consensus 530 ------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 530 ------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp ------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ------------------HHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf ------------------42337998888889999788779777346667522389999777679768378988888989
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEEECCCCCCEECCCC
Q ss_conf 88828776960000-799999476478836110999
Q 001653 891 SYNLLHGKIPPQLI-VLNTLEVFKVAYNNLSGKIPD 925 (1037)
Q Consensus 891 s~N~l~~~~p~~~~-~l~~L~~l~ls~N~l~~~~p~ 925 (1037)
++|++++.++..+. .+++|+.+++++|++.|.++.
T Consensus 592 ~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 999687059668301146657798318970257766
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=474.41 Aligned_cols=585 Identities=22% Similarity=0.210 Sum_probs=463.7
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCC
Q ss_conf 54431002556542798368877988342101899997998768856767870100799997997868999998201024
Q 001653 258 TILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLA 337 (1037)
Q Consensus 258 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 337 (1037)
..+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+....+..|.
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHC
T ss_conf 52641248--8876888989977875978871787675887889964856977874066768888999856756854530
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 99999999765876776459111159998989975478666324693122589886433187755342233677986322
Q 001653 338 NLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQL 417 (1037)
Q Consensus 338 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 417 (1037)
++++|++|++++|.+.+ ++...+..+++|++|++++|.+...
T Consensus 95 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~------------------------------------- 136 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSST------------------------------------- 136 (680)
T ss_dssp TCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCC-------------------------------------
T ss_pred CCCCCCEEECCCCCCCC-CCHHHCCCCCCCCEEECCCCCCCCC-------------------------------------
T ss_conf 38888989898996685-3966741567888898989952466-------------------------------------
Q ss_pred EEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH-HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 1997326446998743320599988998579898665764676-339987699855874566785583378875799856
Q 001653 418 TSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLL-ENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVF 496 (1037)
Q Consensus 418 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 496 (1037)
.+..+..+++|+.+++++|.+++..+..+. ..+++|+.|++++|.+.+..+..+..+.+++.+++.
T Consensus 137 -------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 137 -------------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp -------------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred -------------CCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf -------------7211124556777974588436529788624466632179888982565581555322344554305
Q ss_pred CCCCCCCCCHHHH--HCCCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf 8868545873444--07989759987588688779801007789--8899800662565453567522899988983176
Q 001653 497 NNFFQGHIPVEIG--TYLPGLMELNLSRNAFNGSIPSSFADMKM--LERLDISNNQLTGEIPERMATGCFSLEILALSNN 572 (1037)
Q Consensus 497 ~n~l~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~L~~n 572 (1037)
++.+.+....... ...++|+.|++++|.+.+..+..|..++. |+.|++++|.+. .++...+..+++|+.|++++|
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n 282 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYN 282 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEECCCC
T ss_conf 6646805677787775315100887457743646866751467677888778788767-568021167410568557788
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCC-----CCC----CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 0442375344499997689776873799-----889----1110789897896248716887980048999997897779
Q 001653 573 RLQGHIFSEKFNLTNLMTLQLDGNNFIG-----EIP----ESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643 (1037)
Q Consensus 573 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~-----~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 643 (1037)
.+.+..+..+..+++|+.|++++|...+ .+| ..+..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 56765865626788855773633132133333554543865624677788887989826878855740656872898879
Q ss_pred CCCCCC--CCCCCCC--CCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCCCCC
Q ss_conf 957567--7510028--99989998848857546998878-5766758724750467321-3221999834998579727
Q 001653 644 NNLEGP--IPIEFCQ--RDSLKILDLSNNSIFGTLPSCFS-PASIEQVHLSKNKIEGRLE-SIIHDNPHLVTLDLSYNSL 717 (1037)
Q Consensus 644 n~l~~~--~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~Ls~N~l 717 (1037)
|.+... ....+.. ..+|+.+++++|++.+..+..+. +++|+.|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred CCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 80144323532202455686766889999777677544207788888867787575435755325754612784489975
Q ss_pred CCCCCHHHCCCCCCCEEECCCCCCC--CCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8888510049998868864452224--56742001799763998568828676897653588676778887886200012
Q 001653 718 HGSIPNRIDRLPQLNYLLLAHNYIK--GEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRR 795 (1037)
Q Consensus 718 ~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1037)
.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.+++++|.+++..|..+..
T Consensus 443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-------------------- 502 (680)
T 1ziw_A 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-------------------- 502 (680)
T ss_dssp EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------
T ss_pred CEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCC--------------------
T ss_conf 422764550075431011014644225667764555787899989999877679446345--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECC
Q ss_conf 410234578999999999651388862475222233212465589955884556577--------001276878799767
Q 001653 796 ASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP--------TQIGYLTRIHALNLS 867 (1037)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls 867 (1037)
++.|+.|++++|.+++..+ ..+..+++|+.|+|+
T Consensus 503 --------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 503 --------------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp --------------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred --------------------------------------CCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECC
T ss_conf --------------------------------------534688858899730000000467741423379988888899
Q ss_pred CCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 874421025655057558967288882877696000079999947647883611099998--788878642368888889
Q 001653 868 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA--QFSTFEEDSYEGNPFLCG 945 (1037)
Q Consensus 868 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~--~~~~~~~~~~~~Np~~c~ 945 (1037)
+|.++.+.++.|.++++|+.|||++|++++..+..+..++.|+.+++++|++++..|... .+..+...++.||||.|+
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 99788779777346667522389999777679768378988888989999687059668301146657798318970257
Q ss_pred CCC-CCCCCC
Q ss_conf 999-899999
Q 001653 946 QPL-SKSCND 954 (1037)
Q Consensus 946 ~~~-~~~c~~ 954 (1037)
|+. .+.-.+
T Consensus 625 c~~~~~~~~~ 634 (680)
T 1ziw_A 625 CESIAWFVNW 634 (680)
T ss_dssp CCCCSSEECC
T ss_pred CCCHHHHHHH
T ss_conf 7668999999
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=457.83 Aligned_cols=554 Identities=22% Similarity=0.162 Sum_probs=352.2
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCE
Q ss_conf 5565427983688779883421018999979987688567678-701007999979978689999982010249999999
Q 001653 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNI-SPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRV 344 (1037)
Q Consensus 266 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 344 (1037)
-.+++++|++++|.+++..+..+.++++|++|++++|.....+ |..|.++++|++|++++|.+.+..|..|.++++|+.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EECCCCCCCCCCCH-HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 97658767764591-11159998989975478666324693122589886433187755342233677986322199732
Q 001653 345 LDVSYNQLTENISS-SSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLS 423 (1037)
Q Consensus 345 L~Ls~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 423 (1037)
|++++|.+.+.++. ..+..+++|++|++++|.+....
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~------------------------------------------ 139 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY------------------------------------------ 139 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC------------------------------------------
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC------------------------------------------
T ss_conf 01767889734046764556679998889878642325------------------------------------------
Q ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCC--CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEEC
Q ss_conf 6446998743320599988998579898665764676339--98769985587456678558337887------579985
Q 001653 424 GYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENN--TNLETLLLANNSLFGSFRMPIHSHQK------LATLDV 495 (1037)
Q Consensus 424 ~~~~~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~------L~~L~l 495 (1037)
.+..+..+++|+.|++++|.+.+..+..+ ..+ ++|+.|++++|.+.+..+..+..+++ |+.|++
T Consensus 140 -------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 211 (844)
T 3j0a_A 140 -------LHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211 (844)
T ss_dssp -------CCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBC
T ss_pred -------CCHHHHHCCCCCEEECCCCCCCEECHHHC-CCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEC
T ss_conf -------66557638898989898984776678875-3556775035789788666554553322377223574007965
Q ss_pred CCCCCCCCCCHHHHHC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHC--CCCCCEEECCC
Q ss_conf 6886854587344407--9897599875886887798010077898899800662565453567522--89998898317
Q 001653 496 FNNFFQGHIPVEIGTY--LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATG--CFSLEILALSN 571 (1037)
Q Consensus 496 ~~n~l~~~i~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~~~~--~~~L~~L~L~~ 571 (1037)
++|.+.+.++..+... .+.++.+.+..+..... ...+.+. ......+.+ .++|+.|++++
T Consensus 212 s~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTT
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCC---------------CCCCCCC-CCCHHHHHCCCCCCCCEEECCC
T ss_conf 78868656778887642744100112121223466---------------4445668-8985565255547861898979
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 60442375344499997689776873799889111078989789624871688798004899999789777995756775
Q 001653 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIP 651 (1037)
Q Consensus 572 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 651 (1037)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+
T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 94551586345258999999897981898796883688899989898997885187884689999989898998776286
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-CHHHCCCCC
Q ss_conf 1002899989998848857546998878576675872475046732132219998349985797278888-510049998
Q 001653 652 IEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSI-PNRIDRLPQ 730 (1037)
Q Consensus 652 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 730 (1037)
..|..+++|+.|++++|.+.+... .++|+.+++++|+++..+.. ..+++.+++++|.+.+.. +..+..+++
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~ 427 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI----NLTANLIHLSENRLENLDILYFLLRVPH 427 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred HHHCCCCCCCEEECCCCCCCCCCC----CCCCCHHCCCCCCCCCCCCC----CCCCCEEECCCCCCCCCCHHHHHHCCCC
T ss_conf 661378889998898997786168----89823200589972314554----5543122145675345755666512776
Q ss_pred CCEEECCCCCCCCCCCH-HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86886445222456742-00179976399856882867689765358867677888788620001241023457899999
Q 001653 731 LNYLLLAHNYIKGEIPV-QLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSS 809 (1037)
Q Consensus 731 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1037)
|+.|++++|++.+..+. .+..+++|+.|++++|.++...+.......
T Consensus 428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~-------------------------------- 475 (844)
T 3j0a_A 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV-------------------------------- 475 (844)
T ss_dssp CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC--------------------------------
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH--------------------------------
T ss_conf 666667787125555433356687310024777736441013553555--------------------------------
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEE
Q ss_conf 99996513888624752222332124655899558845565770012768787997678744210256550575589672
Q 001653 810 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLD 889 (1037)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld 889 (1037)
...++.|+.|+|++|++++.+|..|..+++|+.|+|++|++++..|..+. ++|+.||
T Consensus 476 ---------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~ 532 (844)
T 3j0a_A 476 ---------------------FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILD 532 (844)
T ss_dssp ---------------------SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEE
T ss_pred ---------------------HCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEE
T ss_conf ---------------------44755365777889856553955704501221569999978745710110--0455888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 888828776960000799999476478836110999987888786423688888899998999999
Q 001653 890 LSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCNDN 955 (1037)
Q Consensus 890 Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~~~~~c~~~ 955 (1037)
|++|++++.+|..+ ..|+.+++++|++.|.++. .+|..+...+|...|+.+....|..+
T Consensus 533 Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 533 ISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp EEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred CCCCCCCCCCHHHH---CCCCEEEECCCCCCCCCCC----HHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 98884788896683---7768899319970253661----89999997368530266002755780
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=441.15 Aligned_cols=539 Identities=19% Similarity=0.182 Sum_probs=398.2
Q ss_pred EEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHCCCCCCCCEEECCCC
Q ss_conf 7983688779883421018999979987688567678701007999979978689999982-010249999999976587
Q 001653 272 GLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSL-PLCLANLTSLRVLDVSYN 350 (1037)
Q Consensus 272 ~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n 350 (1037)
..+.+++.++. +|. -.+++++|++++|.+....+..|..+++|++|++++|.....+ |..|.++++|+.|++++|
T Consensus 8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEECCCCCCCC-CCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 89823799777-898---99986888887786783296677662137088678997744419778537877888879899
Q ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 67764591111599989899754786663246931225898864331877553422336779863221997326446998
Q 001653 351 QLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGT 430 (1037)
Q Consensus 351 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 430 (1037)
.+.+..| ..|..+++|++|++++|.+.....
T Consensus 84 ~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~------------------------------------------------ 114 (844)
T 3j0a_A 84 KIYFLHP-DAFQGLFHLFELRLYFCGLSDAVL------------------------------------------------ 114 (844)
T ss_dssp CCCEECT-TSSCSCSSCCCEECTTCCCSSCCS------------------------------------------------
T ss_pred CCCCCCH-HHCCCCCCCCEEECCCCCCCCCCC------------------------------------------------
T ss_conf 5853197-671578665870176788973404------------------------------------------------
Q ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCHHH
Q ss_conf 743320599988998579898665764676339987699855874566785583378--875799856886854587344
Q 001653 431 FPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSH--QKLATLDVFNNFFQGHIPVEI 508 (1037)
Q Consensus 431 ~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~~i~~~~ 508 (1037)
....+..+++|+.|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+ ++|+.++++.|.+.+..+..+
T Consensus 115 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCH
T ss_conf 67645566799988898786423256655763889898989898477667887535567750357897886665545533
Q ss_pred HHCCC------CCCEEECCCCCCCCCCCCCCCCC---CCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC
Q ss_conf 40798------97599875886887798010077---8988998006625654535675228999889831760442375
Q 001653 509 GTYLP------GLMELNLSRNAFNGSIPSSFADM---KMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIF 579 (1037)
Q Consensus 509 ~~~~~------~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~ 579 (1037)
.. ++ .|+.|++++|.+.+..+..+... ..++.+.++.+.... ....+.+.+...
T Consensus 195 ~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~----------------~~~~~~l~~~~~ 257 (844)
T 3j0a_A 195 GK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA----------------GFGFHNIKDPDQ 257 (844)
T ss_dssp CS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC----------------SSSCSSSTTGGG
T ss_pred HH-CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCC----------------CCCCCCCCCCCH
T ss_conf 22-3772235740079657886865677888764274410011212122346----------------644456688985
Q ss_pred CCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 344499--997689776873799889111078989789624871688798004899999789777995756775100289
Q 001653 580 SEKFNL--TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR 657 (1037)
Q Consensus 580 ~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 657 (1037)
..+.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 56525554786189897994551586345258999999897981898796883688899989898997885187884689
Q ss_pred CCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEC
Q ss_conf 9989998848857546998878-576675872475046732132219998349985797278888510049998868864
Q 001653 658 DSLKILDLSNNSIFGTLPSCFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLL 736 (1037)
Q Consensus 658 ~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 736 (1037)
++|+.|++++|.+.+..+..+. +++|+.|++++|.++++. .+++|+.+++++|++. .+|.. ..+++.+++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~l 408 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHL 408 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-----CCCCCCHHCCCCCCCC-CCCCC---CCCCCEEEC
T ss_conf 99998989899877628666137888999889899778616-----8898232005899723-14554---554312214
Q ss_pred CCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 452224567-4200179976399856882867689765358867677888788620001241023457899999999965
Q 001653 737 AHNYIKGEI-PVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKE 815 (1037)
Q Consensus 737 ~~n~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1037)
++|++.+.. +..+..+++|+.|++++|++++..+....
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------------------------------- 447 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP----------------------------------------- 447 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-----------------------------------------
T ss_pred CCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCC-----------------------------------------
T ss_conf 567534575566651277666666778712555543335-----------------------------------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCEEECCCCCCC-----CCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEEC
Q ss_conf 138886247522223321246558995588455-----657700127687879976787442102565505755896728
Q 001653 816 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT-----GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL 890 (1037)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL 890 (1037)
..++.|+.|++++|.++ +..+..|..+++|+.|+|++|.+++.+|..|.++++|+.|||
T Consensus 448 ----------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 511 (844)
T 3j0a_A 448 ----------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511 (844)
T ss_dssp ----------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEE
T ss_pred ----------------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEEC
T ss_conf ----------------6687310024777736441013553555447553657778898565539557045012215699
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 888287769600007999994764788361109999878887864236888888999989
Q 001653 891 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSK 950 (1037)
Q Consensus 891 s~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~~~~ 950 (1037)
++|++++.++..+. ++|+.|++++|++++.+|.. |..+...++.||||.|+|++..
T Consensus 512 s~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 512 NSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELST 567 (844)
T ss_dssp ESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCCS
T ss_pred CCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--HCCCCEEEECCCCCCCCCCCHH
T ss_conf 99978745710110--04558889888478889668--3776889931997025366189
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=438.04 Aligned_cols=523 Identities=19% Similarity=0.166 Sum_probs=356.0
Q ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECC
Q ss_conf 54279836887798834210189999799876885676787010079999799786899999820102499999999765
Q 001653 269 HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVS 348 (1037)
Q Consensus 269 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 348 (1037)
++++|++++|.+++..+..+.++++|++|++++|.+....|..|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 87677645911115999898997547866632469312258988643318775534223367798632219973264469
Q 001653 349 YNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDG 428 (1037)
Q Consensus 349 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 428 (1037)
+|.+.+ ++...+..+++|++|++++|.+...+.
T Consensus 114 ~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------------------------------- 146 (606)
T 3t6q_A 114 QTGISS-IDFIPLHNQKTLESLYLGSNHISSIKL---------------------------------------------- 146 (606)
T ss_dssp TSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCC----------------------------------------------
T ss_pred CCCCCC-CCCCHHCCCCCCCEEECCCCCCCCCCC----------------------------------------------
T ss_conf 267665-781012237822389887983411476----------------------------------------------
Q ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH
Q ss_conf 987433205999889985798986657646763399876--998558745667855833788757998568868545873
Q 001653 429 GTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLE--TLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPV 506 (1037)
Q Consensus 429 ~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~--~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~ 506 (1037)
+.. ..+++|+.+++++|.+.+..+.. +..+++|+ .+++++|.+.+..+..+. ...++.++++++.. ++.
T Consensus 147 ---~~~-~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~ 217 (606)
T 3t6q_A 147 ---PKG-FPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LLV 217 (606)
T ss_dssp ---CTT-CCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HHH
T ss_pred ---CCC-CCCCCCCEEECCCCCCCCCCHHH-HHHHCCCCEEEEECCCCCCCCCCHHHHH-HCCCCCCCCCCCHH---HHH
T ss_conf ---545-68765687776568445549656-3322156403896679814754866730-01001355677266---777
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCC--CCCEEECCCCCCCCCCCCCCCC
Q ss_conf 44407989759987588688779801007789889980066256545356752289--9988983176044237534449
Q 001653 507 EIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF--SLEILALSNNRLQGHIFSEKFN 584 (1037)
Q Consensus 507 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~ 584 (1037)
.+ ..+..+....+....+. .+... .++...+.++. +++.+++++|.+.+..+..+..
T Consensus 218 ~~-~~l~~~~l~~l~~~~~~-----------~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 276 (606)
T 3t6q_A 218 IF-KGLKNSTIQSLWLGTFE-----------DMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276 (606)
T ss_dssp HH-HHTTTCEEEEEECCCCT-----------TSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT
T ss_pred HH-HHCCCCCHHHEECHHHC-----------CCCCC---------CCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCC
T ss_conf 76-51335644220020110-----------26412---------26866743032075059994457658557777445
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEE
Q ss_conf 99976897768737998891110789897896248716887980048999997897779957567751-00289998999
Q 001653 585 LTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPI-EFCQRDSLKIL 663 (1037)
Q Consensus 585 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L 663 (1037)
+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++. .+..+++|+.|
T Consensus 277 l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred CCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEE
T ss_conf 667888956288267-7782141654688897716876867602330157689888989974443462455066758988
Q ss_pred ECCCCCCCCCC--CCCCC-CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCH-HHCCCCCCCEEECCCC
Q ss_conf 88488575469--98878-57667587247504673213221999834998579727888851-0049998868864452
Q 001653 664 DLSNNSIFGTL--PSCFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPN-RIDRLPQLNYLLLAHN 739 (1037)
Q Consensus 664 ~l~~n~~~~~~--~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n 739 (1037)
++++|.+.+.. +..+. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 78899666456752210567888989898996775788873477457768788886777565212417655888989898
Q ss_pred CCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 22456742001799763998568828676897653588676778887886200012410234578999999999651388
Q 001653 740 YIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQ 819 (1037)
Q Consensus 740 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1037)
.+.+..+..+..+++|+.|++++|++++..+.....
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------------------------------- 471 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-------------------------------------------- 471 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG--------------------------------------------
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHH--------------------------------------------
T ss_conf 557768778737887888989899888543454312--------------------------------------------
Q ss_pred EEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf 86247522223321246558995588455657700127687879976787442102565505755896728888287769
Q 001653 820 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 899 (1037)
Q Consensus 820 ~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~ 899 (1037)
...++.|+.|++++|.+++..|..|+.+++|+.|++++|++++..|+.|.++++| .||+++|++++.+
T Consensus 472 -----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 472 -----------LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp -----------GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred -----------HCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCC
T ss_conf -----------4048876688799996670686463265678889898980686896684756651-8987689414268
Q ss_pred CCCCCCCCCCCEEECCCCCCEECCCC
Q ss_conf 60000799999476478836110999
Q 001653 900 PPQLIVLNTLEVFKVAYNNLSGKIPD 925 (1037)
Q Consensus 900 p~~~~~l~~L~~l~ls~N~l~~~~p~ 925 (1037)
|..+..++.|+.+++++|++.|.++.
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 76625677878896779986166775
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=429.93 Aligned_cols=531 Identities=21% Similarity=0.223 Sum_probs=324.5
Q ss_pred EEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCC
Q ss_conf 79836887798834210189999799876885676787010079999799786899999820102499999999765876
Q 001653 272 GLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 351 (1037)
Q Consensus 272 ~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 351 (1037)
.++.++..++. +|..+. +.+++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 16 ~~~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCSS-CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCCCC-CCCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 37777798062-867789--867589815873471796672567665289788983552485113684336764488985
Q ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 77645911115999898997547866632469312258988643318775534223367798632219973264469987
Q 001653 352 LTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTF 431 (1037)
Q Consensus 352 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 431 (1037)
+.+..+ ..+..+++|++|++++|.+...+
T Consensus 93 l~~~~~-~~~~~l~~L~~L~L~~n~i~~l~-------------------------------------------------- 121 (606)
T 3t6q_A 93 LIFMAE-TALSGPKALKHLFFIQTGISSID-------------------------------------------------- 121 (606)
T ss_dssp CSEECT-TTTSSCTTCCEEECTTSCCSCGG--------------------------------------------------
T ss_pred CCCCCH-HHHCCCCCCCEEECCCCCCCCCC--------------------------------------------------
T ss_conf 654586-55234421537652126766578--------------------------------------------------
Q ss_pred CHHHHCCCCCCEEECCCCCCCCCC-CHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH
Q ss_conf 433205999889985798986657-6467633998769985587456678558337887579985688685458734440
Q 001653 432 PEFLYHQHDLNSVNLSHLNLSGEF-PNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGT 510 (1037)
Q Consensus 432 ~~~l~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~ 510 (1037)
+..+..+++|+.|++++|.+.+.. |.. ..+++|++|++++|.+....+..+..
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~------------------------ 175 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISSIKLPKG--FPTEKLKVLDFQNNAIHYLSKEDMSS------------------------ 175 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCCCCCCTT--CCCTTCCEEECCSSCCCEECHHHHHT------------------------
T ss_pred CCHHCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCHHHHHH------------------------
T ss_conf 1012237822389887983411476545--68765687776568445549656332------------------------
Q ss_pred CCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCC-----CCCCCCCC
Q ss_conf 798975--99875886887798010077898899800662565453567522899988983176044-----23753444
Q 001653 511 YLPGLM--ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ-----GHIFSEKF 583 (1037)
Q Consensus 511 ~~~~L~--~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~ 583 (1037)
+++|+ .+++++|.+.+..+..|.. ..|+.+++++|.. ++. .+..+..+....+....+. ......+.
T Consensus 176 -l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 176 -LQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp -TTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred -HCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHH---HHH-HHHHCCCCCHHHEECHHHCCCCCCCCCHHHHC
T ss_conf -21564038966798147548667300-1001355677266---777-76513356442200201102641226866743
Q ss_pred CCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999--976897768737998891110789897896248716887980048999997897779957567751002899989
Q 001653 584 NLT--NLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLK 661 (1037)
Q Consensus 584 ~l~--~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 661 (1037)
++. +++.+++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred HHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCC
T ss_conf 032075059994457658557777445667888956288267-7782141654688897716876867602330157689
Q ss_pred EEECCCCCCCCCCCCC-CC-CCCCCEEECCCCCCCCCC--HHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECC
Q ss_conf 9988488575469988-78-576675872475046732--1322199983499857972788885100499988688644
Q 001653 662 ILDLSNNSIFGTLPSC-FS-PASIEQVHLSKNKIEGRL--ESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLA 737 (1037)
Q Consensus 662 ~L~l~~n~~~~~~~~~-~~-~~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 737 (1037)
.|++++|.+.+..+.. +. +++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 88898997444346245506675898878899666456752210567888989898996775788873477457768788
Q ss_pred CCCCCCCCCH-HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5222456742-001799763998568828676897653588676778887886200012410234578999999999651
Q 001653 738 HNYIKGEIPV-QLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEE 816 (1037)
Q Consensus 738 ~n~l~~~~~~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1037)
+|++.+..+. .+..+++|+.|++++|.+++..|..+..
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------- 447 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG----------------------------------------- 447 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-----------------------------------------
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHC-----------------------------------------
T ss_conf 886777565212417655888989898557768778737-----------------------------------------
Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCC
Q ss_conf 3888624752222332124655899558845565---7700127687879976787442102565505755896728888
Q 001653 817 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE---IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893 (1037)
Q Consensus 817 ~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 893 (1037)
++.|+.|++++|.+++. .+..+..+++|+.|++++|.+++..|..|.++++|+.|||++|
T Consensus 448 -----------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 448 -----------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp -----------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -----------------CCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf -----------------887888989899888543454312404887668879999667068646326567888989898
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCEECCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 287769600007999994764788361109999-8788878642368888889999
Q 001653 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR-AQFSTFEEDSYEGNPFLCGQPL 948 (1037)
Q Consensus 894 ~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~Np~~c~~~~ 948 (1037)
++++.+|..+..++.| .+++++|++++.+|.. ..+..+...++.|||+.|+|+.
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 0686896684756651-898768941426876625677878896779986166775
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=422.53 Aligned_cols=515 Identities=21% Similarity=0.206 Sum_probs=234.5
Q ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEC
Q ss_conf 65427983688779883421018999979987688567678701007999979978689999982010249999999976
Q 001653 268 VHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDV 347 (1037)
Q Consensus 268 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 347 (1037)
+++++|++++|.+++..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 58767764591111599989899754786663246931225898864331877553422336779863221997326446
Q 001653 348 SYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVD 427 (1037)
Q Consensus 348 s~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 427 (1037)
++|.+.+ ++...+..+++|++|++++|.+..+
T Consensus 112 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----------------------------------------------- 143 (606)
T 3vq2_A 112 VETKLAS-LESFPIGQLITLKKLNVAHNFIHSC----------------------------------------------- 143 (606)
T ss_dssp TTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCC-----------------------------------------------
T ss_pred CCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCE-----------------------------------------------
T ss_conf 3775554-4511348988779896878852325-----------------------------------------------
Q ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCC----CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 99874332059998899857989866576467633998----76998558745667855833788757998568868545
Q 001653 428 GGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTN----LETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGH 503 (1037)
Q Consensus 428 ~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~----L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (1037)
.+|..+..+++|+.|++++|.+.+..+..+ ..+.+ +.++++++|.+....+..+... +|+.+++++|.+.+.
T Consensus 144 --~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~ 219 (606)
T 3vq2_A 144 --KLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSN 219 (606)
T ss_dssp --CCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHH
T ss_pred --ECHHHHHHCCCCCEEECCCCCCEECCHHHH-HHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHH
T ss_conf --306867326777788766885310573341-2120342002430046897532571105676-043352467856166
Q ss_pred CCHHHHHCCCCCCEEECCCCCCCCC------CCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEEC-CCCCCCC
Q ss_conf 8734440798975998758868877------98010077898899800662565453567522899988983-1760442
Q 001653 504 IPVEIGTYLPGLMELNLSRNAFNGS------IPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILAL-SNNRLQG 576 (1037)
Q Consensus 504 i~~~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~l~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~L-~~n~l~~ 576 (1037)
........++.++.+.+..+.+... .+..+..+..+ .++.+.+ ..+.+.+
T Consensus 220 ~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-----------------------~l~~l~l~~~~~~~~ 276 (606)
T 3vq2_A 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-----------------------TIDEFRLTYTNDFSD 276 (606)
T ss_dssp HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-----------------------EEEEEEECCCTTCCG
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC-----------------------CHHHEECCCCCCCCC
T ss_conf 778886026656523141111036774102681776666543-----------------------474501236655554
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 37534449999768977687379988911107898978962487168879800489999978977799575677510028
Q 001653 577 HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQ 656 (1037)
Q Consensus 577 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 656 (1037)
..+. +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+.. .+..
T Consensus 277 ~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~ 348 (606)
T 3vq2_A 277 DIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVA 348 (606)
T ss_dssp GGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCC
T ss_pred CCCC-CCCCCCCCEEEECCCCCHH-HH-HCCCCCCCCEEECCCCCC-CCCC-CC-CCCCCCEEECCCCCCCCCH--HHCC
T ss_conf 3222-3548878987714766044-35-433401177897646667-6546-67-8875564454478685310--0024
Q ss_pred CCCCCEEECCCCCCCCCC--CCCC-CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC-HHHCCCCCCC
Q ss_conf 999899988488575469--9887-85766758724750467321322199983499857972788885-1004999886
Q 001653 657 RDSLKILDLSNNSIFGTL--PSCF-SPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIP-NRIDRLPQLN 732 (1037)
Q Consensus 657 ~~~L~~L~l~~n~~~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 732 (1037)
+++|+.|++++|.+.+.. +..+ .+++|+.|++++|.+++.. ..+..+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCH-HHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC
T ss_conf 89888797758736877520122146775548678899530005-54068888896589887058753764564621378
Q ss_pred EEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 886445222456742001799763998568828676-8976535886767788878862000124102345789999999
Q 001653 733 YLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGR-IPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP 811 (1037)
Q Consensus 733 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1037)
.|++++|.+.+..|..+..+++|+.+++++|.+++. +|..+..
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------------ 471 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN------------------------------------ 471 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------------------------------
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCC------------------------------------
T ss_conf 89896897874335553477878989898983798546776045------------------------------------
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECC
Q ss_conf 99651388862475222233212465589955884556577001276878799767874421025655057558967288
Q 001653 812 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 891 (1037)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 891 (1037)
++.|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..|.++++|+.||++
T Consensus 472 ----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 472 ----------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp ----------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred ----------------------CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECC
T ss_conf ----------------------7889989898885776486561546468989898995787487770688768988898
Q ss_pred CCCCCCCCCCCCCCCC-CCCEEECCCCCCEECCCC
Q ss_conf 8828776960000799-999476478836110999
Q 001653 892 YNLLHGKIPPQLIVLN-TLEVFKVAYNNLSGKIPD 925 (1037)
Q Consensus 892 ~N~l~~~~p~~~~~l~-~L~~l~ls~N~l~~~~p~ 925 (1037)
+|+++ .+|..+..++ +|+.+++++|++.|.++.
T Consensus 530 ~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 530 FNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 98376-66876752102174887628986647764
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=417.97 Aligned_cols=543 Identities=18% Similarity=0.139 Sum_probs=400.5
Q ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECC
Q ss_conf 54279836887798834210189999799876885676787010079999799786899999820102499999999765
Q 001653 269 HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVS 348 (1037)
Q Consensus 269 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 348 (1037)
..+.++.+++.++. +|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 12 ~~~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCCEECCCCCCCC-CCCCCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECC
T ss_conf 89705746888451-898888--876788788897577375455577667488688773664397773060106886787
Q ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 87677645911115999898997547866632469312258988643318775534223367798632219973264469
Q 001653 349 YNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDG 428 (1037)
Q Consensus 349 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 428 (1037)
+|.+.+..| ..+..+++|++|++++|.+...+
T Consensus 89 ~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~----------------------------------------------- 120 (606)
T 3vq2_A 89 GNPIQSFSP-GSFSGLTSLENLVAVETKLASLE----------------------------------------------- 120 (606)
T ss_dssp TCCCCCCCT-TSSTTCTTCCEEECTTSCCCCSS-----------------------------------------------
T ss_pred CCCCCCCCH-HHCCCCCCCCEEECCCCCCCCCC-----------------------------------------------
T ss_conf 985630485-22078653788870377555445-----------------------------------------------
Q ss_pred CCCCHHHHCCCCCCEEECCCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 9874332059998899857989866-576467633998769985587456678558337887579985688685458734
Q 001653 429 GTFPEFLYHQHDLNSVNLSHLNLSG-EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVE 507 (1037)
Q Consensus 429 ~~~~~~l~~~~~L~~L~L~~n~i~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~ 507 (1037)
+..+..+++|+.|++++|.+.+ .+|..+ ..+++|++|++++|.+.+..+..+..+.+++
T Consensus 121 ---~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---------------- 180 (606)
T 3vq2_A 121 ---SFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENP---------------- 180 (606)
T ss_dssp ---SSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCT----------------
T ss_pred ---CCCCCCCCCCCEEECCCCCCCCEECHHHH-HHCCCCCEEECCCCCCEECCHHHHHHHHCCC----------------
T ss_conf ---11348988779896878852325306867-3267777887668853105733412120342----------------
Q ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCC------CCCCC
Q ss_conf 440798975998758868877980100778988998006625654535675228999889831760442------37534
Q 001653 508 IGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG------HIFSE 581 (1037)
Q Consensus 508 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~------~~~~~ 581 (1037)
..+..+++++|.+.+..+..+... +|+.|++++|.+.+......+..++.++.+.+..+.+.. .....
T Consensus 181 -----~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 181 -----QVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp -----TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred -----CCCCEEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf -----002430046897532571105676-04335246785616677888602665652314111103677410268177
Q ss_pred CCCCC--CCCEEEC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 44999--9768977-68737998891110789897896248716887980048999997897779957567751002899
Q 001653 582 KFNLT--NLMTLQL-DGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRD 658 (1037)
Q Consensus 582 ~~~l~--~L~~L~L-~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 658 (1037)
+.++. .++.+.+ ..+.+.+..+. +..+++|+.+++++|.+.. .| .+..+++|+.|++++|.+ +.+| .+ .++
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~ 328 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLP 328 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCS
T ss_pred HHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHH-HH-HCCCCCCCCEEECCCCCC-CCCC-CC-CCC
T ss_conf 66665434745012366555543222-3548878987714766044-35-433401177897646667-6546-67-887
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--HHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEC
Q ss_conf 989998848857546998878576675872475046732--132219998349985797278888510049998868864
Q 001653 659 SLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRL--ESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLL 736 (1037)
Q Consensus 659 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 736 (1037)
+|+.|++++|...+.. ....+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+ +|..+..+++|+.|++
T Consensus 329 ~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDF 406 (606)
T ss_dssp SCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCH-HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEEC
T ss_conf 5564454478685310-0024898887977587368775201221467755486788995300-0554068888896589
Q ss_pred CCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4522245674-200179976399856882867689765358867677888788620001241023457899999999965
Q 001653 737 AHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKE 815 (1037)
Q Consensus 737 ~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1037)
++|++.+..+ ..+..+++|+.+++++|.+++..|..+..
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------- 446 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG---------------------------------------- 446 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT----------------------------------------
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCC----------------------------------------
T ss_conf 8870587537645646213788989689787433555347----------------------------------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCC
Q ss_conf 1388862475222233212465589955884556-577001276878799767874421025655057558967288882
Q 001653 816 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 894 (1037)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 894 (1037)
++.|+.|++++|.+++ .+|..++.+++|+.|++++|.+++..|..|.++++|+.|++++|+
T Consensus 447 ------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 447 ------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp ------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ------------------CCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf ------------------78789898989837985467760457889989898885776486561546468989898995
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 877696000079999947647883611099998788-878642368888889999899999
Q 001653 895 LHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS-TFEEDSYEGNPFLCGQPLSKSCND 954 (1037)
Q Consensus 895 l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~-~~~~~~~~~Np~~c~~~~~~~c~~ 954 (1037)
+++.+|..+..+++|+.|++++|+++...+....+. .+...++.+||+.|+|+......+
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHH
T ss_conf 7874877706887689888989837666876752102174887628986647764899999
Done!