Query 001655
Match_columns 1036
No_of_seqs 191 out of 746
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 16:36:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001655.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_952-956//hhsearch_pdb/001655hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 1.0 1 1 1519.2 134.4 1029 1-1036 70-1158(1158)
2 1pgu_A Actin interacting prote 1.0 1 1 74.2 55.0 382 438-887 208-613 (615)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 72.8 49.0 420 446-947 810-1246(1249)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 65.2 49.2 192 662-888 963-1158(1249)
5 1pgu_A Actin interacting prote 1.0 1 1 63.6 51.6 418 437-946 161-610 (615)
6 3v7d_B Cell division control p 1.0 1 1 59.5 39.5 330 438-840 124-458 (464)
7 3mkq_A Coatomer beta'-subunit; 1.0 1 1 58.3 37.0 138 660-844 356-504 (814)
8 1nr0_A Actin interacting prote 1.0 1 1 56.4 62.9 395 438-886 192-609 (611)
9 3gre_A Serine/threonine-protei 1.0 1 1 55.8 28.3 257 477-796 63-357 (437)
10 2pm9_A Protein WEB1, protein t 1.0 1 1 55.0 14.0 47 749-796 285-335 (416)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=1.00 E-value=1 Score=1519.21 Aligned_cols=1029 Identities=56% Similarity=0.960 Sum_probs=942.6
Q ss_pred CEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCC--CEEEEEEEECCCCCCCCCCCCCEEEECCCCCEE
Q ss_conf 904877678727643136899842999996867199999969999--499988652268988647889749998999999
Q 001655 1 MLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESS--ELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLI 78 (1036)
Q Consensus 1 ~~~~~l~g~i~~i~~~r~~~~~~d~Lli~~~~~~~~~l~~~~~~~--~~~t~s~~~~~~~~~~~~~~~~~l~vdp~~r~~ 78 (1036)
++++++||+|++++++|++++++|+|+|+|+++|+++++||+..+ +++|.+.++++++.+|+.++|++++|||.|||+
T Consensus 70 v~~~~l~G~I~~l~~~r~~g~~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~~~~~~~~~~r~~~~g~~l~vDP~gR~~ 149 (1158)
T 3ei3_A 70 VKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMI 149 (1158)
T ss_dssp EEEEECSSCEEEEEEECCTTCSSCEEEEEETTCEEEEEEEEC-CCCCEEEEEEEEECCCSSCCBCTTCCEEEECTTSSEE
T ss_pred EEEEECCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCEE
T ss_conf 99998333777888886899984099999177609999985888815689996244556756457778879996888999
Q ss_pred EEEECCCEEEEEECCCCCCCCCCEECCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEECCCCCC
Q ss_conf 99801875999958998763320001357730789983239998779999784689635999998616776353142166
Q 001655 79 GLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQN 158 (1036)
Q Consensus 79 ~~~~~~~~l~ilp~~~~~~~~~~~~~~l~~~~i~d~~fL~~~~~ptlaiL~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 158 (1036)
++++|++.+.|+|+++.+....++++++++.+|+||+||+||++|+||+||++.. .+++.+|+++++++...+..|+..
T Consensus 150 ~l~~~e~~~~v~pl~~~~~~l~~~~~~l~~~~v~d~~fL~g~~~P~~A~Ly~d~~-~~~l~~y~ldl~~~~~~~~~w~~~ 228 (1158)
T 3ei3_A 150 GLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQ-GRHVKTYEVSLREKEFNKGPWKQE 228 (1158)
T ss_dssp EEECBTTEEEEEECCTTCTTCCCEEEECSCCCEEEEEECSSCSSCEEEEEEEETT-EEEEEEEEEETTTTEEEECSSCCE
T ss_pred EEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCC-CCEEEEEEEECCCCEEEECCCCCC
T ss_conf 9993159899999438866662202156543289999965999868999998899-989999999767770544244124
Q ss_pred CCCCCCCEEEECCCCCCCEEEEECCEEEEECCCCEEEEC--CC-CCEEEEEEEEECCCCEEEEECCCCCEEEEEEEECCC
Q ss_conf 668987799961999963499947469997089235530--68-631367889806998799983866879999992495
Q 001655 159 NLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIP--IR-PSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE 235 (1036)
Q Consensus 159 ~lp~~~~~lip~p~~~~G~lvi~~~~i~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~ll~~~~G~l~~l~l~~~~~ 235 (1036)
++|+++++|||||.|+||+||+|+|.|+|+++.+...++ .. ...++||+.++.++.++||++++|+||++.+..|++
T Consensus 229 ~l~~~a~~LipVP~~~gGvlv~g~n~i~y~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~ 308 (1158)
T 3ei3_A 229 NVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQ 308 (1158)
T ss_dssp EECTTCCEEEECCTTTCCEEEECSSCEEEEETTEEEEECCGGGGGSCEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC-
T ss_pred CCCCCCCEEEECCCCCCEEEEEECCEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 59999788999788885699997888999919975587266457865899999936997899995999999999997177
Q ss_pred -----EEEEEEEEECCCCCCCEEEEEECCCEEEEEEEECCEEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEECCCCC
Q ss_conf -----786699999286024427999669869997752681699975089988871799630136785022599306778
Q 001655 236 -----KVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQ 310 (1036)
Q Consensus 236 -----~v~~~~i~~~~~~~~~s~l~~l~~~~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n~~PI~D~~~~~~~~~ 310 (1036)
.|+++++++++++++|+||+++++|++|+||++|||+|+++...+++..+|++++|+++|||||.||++++..++
T Consensus 309 ~~~~~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~ 388 (1158)
T 3ei3_A 309 MDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQ 388 (1158)
T ss_dssp ----CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSS
T ss_pred CCCCEEEEEEEEEECCCCCCCCEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEECCCCC
T ss_conf 56752589989998588457518999889879999962783899983389986451774732157677116999716778
Q ss_pred CCCEEEEEEECCCCCCEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEC
Q ss_conf 97619997307888607998318722498944279942577953189999631999994185089990479971333323
Q 001655 311 GQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIE 390 (1036)
Q Consensus 311 ~~~~lv~~sG~g~~g~l~~l~~gi~~~~~~~~~~~~v~~iw~l~~~~~~~~~~~li~S~~~~T~vl~~~~~~~~~e~~~~ 390 (1036)
++++|++|||.|++|+|+++|+|+++++.++.++||++++|+++....+++|.||++||+++|+||+++++ +++|++.+
T Consensus 389 ~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e-~veev~~~ 467 (1158)
T 3ei3_A 389 GQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGE-EVEETELM 467 (1158)
T ss_dssp SCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETT-EEEEECCT
T ss_pred CCCEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEEECC-CCCCCCCC
T ss_conf 98709999876999758998248877998960599855799976067777788999978897699997077-54521015
Q ss_pred CEECCCCCEEEEECCCCEEEEEECCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCEEEEEEECCCEEEE
Q ss_conf 71215654245614898699994491899935885201234189998589999678899999869869999983867999
Q 001655 391 GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTE 470 (1036)
Q Consensus 391 ~f~~~~~Ti~~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~as~~~~~ivi~~~~~~iv~l~~~~~~l~~ 470 (1036)
||.++++||+|++++++.+||||+++||+++.+....+++|.+|.+..|++|++++.+++++. ++.++||+++++++.+
T Consensus 468 gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~ 546 (1158)
T 3ei3_A 468 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQ 546 (1158)
T ss_dssp TCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE-CCEEEEEEEECCCEEE
T ss_conf 543889819999958985999906979999788880889998899988999995798799997-9989999963894246
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECC
Q ss_conf 97113882347997089899998663999998557789999779987068842899667215894564490799999589
Q 001655 471 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD 550 (1036)
Q Consensus 471 ~~~~~l~~~is~l~~~~~~~~~~~~~~~~v~~w~~~~i~i~~l~~l~~v~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~ 550 (1036)
..+.+++.+|+|+++.+.++++..+.+++||+|.+++++||+|++++.++.+.|+.+..|+|+++..+++.+||++|++|
T Consensus 547 ~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d 626 (1158)
T 3ei3_A 547 ISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD 626 (1158)
T ss_dssp EEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred ECCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEECC
T ss_conf 12357898158999206888754466799998889889999879987689998899998847999983897689999079
Q ss_pred CCEEEEEEECCCCCCCCCEEEECCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCC
Q ss_conf 83999999368876433214312854337999983992179997298659996299089822053454145254579999
Q 001655 551 GHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFP 630 (1036)
Q Consensus 551 G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 630 (1036)
|.++.|.++..++.+.+.|++.+|++|++|.++...+..+||++|++||++|.+++++.|+|++..++.++++|++++|+
T Consensus 627 G~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~ 706 (1158)
T 3ei3_A 627 GALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 706 (1158)
T ss_dssp SEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSST
T ss_pred CEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCEEEECCCHHHHCEEECCCCCCCC
T ss_conf 86999997278874166416880787439999962893369997799779997289067702475781567044712389
Q ss_pred CEEEEEECCEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCEEEEEEEECC---CC----------------------
Q ss_conf 91999858918999985888758899708985466897469989999983047---88----------------------
Q 001655 631 DSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQ---SC---------------------- 685 (1036)
Q Consensus 631 ~~li~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~---~~---------------------- 685 (1036)
+++++++++.|+|++++..++|++++|||++||||++||+++++|+|++++.+ ..
T Consensus 707 ~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1158)
T 3ei3_A 707 DSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS 786 (1158)
T ss_dssp TEEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred CCEEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 84999938956999956657705899868887118998288898999998445456543345012212344431013443
Q ss_pred --------------CCCEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEE
Q ss_conf --------------883035799999689953999897799870768999997689943999985543799887741499
Q 001655 686 --------------AEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRI 751 (1036)
Q Consensus 686 --------------~~~~~~~~i~lid~~t~~~i~~~~l~~~E~v~si~~~~l~~~~~~~i~VGT~~~~~~e~~~~~Gri 751 (1036)
+.+.+.++++++||.+|+++++++|+++|.+.|++.+.|.++.++|++|||++..++|+++++|||
T Consensus 787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri 866 (1158)
T 3ei3_A 787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI 866 (1158)
T ss_dssp CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred CCCCCCCCCCHHHCCCCEEEEEEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEE
T ss_conf 23443335761122884046899999289776988896799951689999998059988999994153788877786589
Q ss_pred EEEEEECCEEEEEEEEEECCCEEEECCCCCEEEEEECCEEEEEEEEECCCCCCCHHCCCCCCCCEEEEEEEEECCEEEEE
Q ss_conf 99999699699999987359402744346819999879799999452577720002002432221899999829999998
Q 001655 752 LVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVG 831 (1036)
Q Consensus 752 ~v~~i~~~kl~~~~~~~~~g~v~~i~~~~g~li~~~g~~i~i~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~n~Iivg 831 (1036)
++|++.++||+++++++++|+|+|+++++|+|++|+|+++++|+|..+ +.|+..+..-..+.++++++.+|+|+||
T Consensus 867 ~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig~~l~vy~l~~~----~~L~~~~~~~~~i~~~~l~~~~~~I~vg 942 (1158)
T 3ei3_A 867 VVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVG 942 (1158)
T ss_dssp EEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEETTEEEEEEECTT----SCEEEEEEECCCSCEEEEEEETTEEEEE
T ss_pred EEEEEECCEEEEEEEEECCCCCEEEEEECCEEEEECCCEEEEEECCCC----CEEEEEEECCCCEEEEEEECCCCEEEEE
T ss_conf 999998999999999972876879842699899991999999987899----6578873014617999980149899999
Q ss_pred ECCCCEEEEEEECCCCEEEEEECCCCCCEEEEEEEEECCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 52440999999624891999712488610699999618619997068859999518999990004510289978728710
Q 001655 832 DLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFV 911 (1036)
Q Consensus 832 D~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v 911 (1036)
|+++|+++++|++++++|+++|||+.++|++++++|++++++++|++||+++++++++..+++++++|+.+++||+|+.|
T Consensus 943 D~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~v 1022 (1158)
T 3ei3_A 943 DLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFV 1022 (1158)
T ss_dssp ESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCE
T ss_pred EHHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCCCE
T ss_conf 93430899999767885999972363340789999716868998588858999648888883126651108899589967
Q ss_pred CEEEEEEEEECCC-CCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2488544641278-998888456999912542589994496679999999999982136989989222222112655589
Q 001655 912 NRFRHGSLVMRLP-DSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVD 990 (1036)
Q Consensus 912 ~~~~~~~~~~~~~-~~~~~~~~~ii~~t~~GsI~~i~~i~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~~~~~ 990 (1036)
|+|+++++.+..+ +......+.++|+|.+|+||.++|++++.|++|..||++|....+++||++|++||+++++.+..+
T Consensus 1023 t~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl~~~~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~~~~ 1102 (1158)
T 3ei3_A 1023 NVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEP 1102 (1158)
T ss_dssp EEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEECHHHHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSCEEC
T ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCEECCCCCCC
T ss_conf 46981656048875555456523999936877899997499999999999999986478976989799617013455678
Q ss_pred CCCEEEHHHHHHHHCCCHHHHHHHHHHCC----------CCHHHHHHHHHHHHCCC
Q ss_conf 99277515778882399999999997469----------99999999999885049
Q 001655 991 AKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEELTRLH 1036 (1036)
Q Consensus 991 ~~~~iDGdll~~fl~l~~~~q~~i~~~~g----------~~~~~i~~~l~~l~~~h 1036 (1036)
+++|||||||++|++|+.++|++||++++ ++++||.|+||+|+|||
T Consensus 1103 ~~~~iDGdLle~fl~L~~~~q~~ia~~l~~~~~~~~~~~~t~~ei~k~~e~l~r~h 1158 (1158)
T 3ei3_A 1103 ATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1158 (1158)
T ss_dssp CBSEEEHHHHHGGGGSCHHHHHHHCCCC------------CCHHHHHHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 87659499999887599999999998637244444557999999999999986549
No 2
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=74.15 Aligned_cols=382 Identities=15% Similarity=0.128 Sum_probs=180.1
Q ss_pred CEEEEEEC---CCEEEEEECCCEEEEEEECCCEEEEEEEC---CCCCEEEEEECCCCCCCCCCCCEEEEEEECCCEEEEE
Q ss_conf 58999967---88999998698699999838679999711---3882347997089899998663999998557789999
Q 001655 438 SVNVATAN---ASQVLLATGGGHLVYLEIGDGILTEVKHA---QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 511 (1036)
Q Consensus 438 ~I~~as~~---~~~ivi~~~~~~iv~l~~~~~~l~~~~~~---~l~~~is~l~~~~~~~~~~~~~~~~v~~w~~~~i~i~ 511 (1036)
.|.+.+.+ +..++.+..++.+.++++..++....-.. .....+.++++. . ..+++.+.. ++.+.+|
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-----~~~l~~~~~-d~~i~~w 279 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--D-----SQKFATVGA-DATIRVW 279 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--S-----SSEEEEEET-TSEEEEE
T ss_pred EEEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC--C-----CCEEEEECC-CCCEEEE
T ss_conf 2899997897788899986898089998999978589525444567755899981--8-----997999848-9948999
Q ss_pred ECCCCCEEEEECCCCC---CCCEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEEEECCC
Q ss_conf 7799870688428996---6721589456449079999958983999999368876433214312854337999983992
Q 001655 512 SLPDLNLITKEHLGGE---IIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNT 588 (1036)
Q Consensus 512 ~l~~l~~v~~~~l~~~---~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~ 588 (1036)
++.+.+.+........ ..+.++... +..+++++..+|.+..|.+... .. .....--..++ ..+.. ..
T Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~g~i~~~d~~~~--~~--~~~~~~~~~~v--~~~~~-~~ 349 (615)
T 1pgu_A 280 DVTTSKCVQKWTLDKQQLGNQQVGVVAT---GNGRIISLSLDGTLNFYELGHD--EV--LKTISGHNKGI--TALTV-NP 349 (615)
T ss_dssp ETTTTEEEEEEECCTTCGGGCEEEEEEE---ETTEEEEEETTSCEEEEETTEE--EE--EEEECCCSSCE--EEEET-TT
T ss_pred ECCCCCEEEEECCCCCCCCCCEEEEEEC---CCCEEEEEECCCCEEEEECCCC--CE--EEEEECCCCCE--EEEEE-CC
T ss_conf 7888927878847877545714699918---9976999978997899988899--28--89994777878--99995-67
Q ss_pred EEEEEECCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEE-CCEEEEEEECCCCCEEEEEEECCCCCCEEE
Q ss_conf 1799972986599962990898220534541452545799999199985-891899998588875889970898546689
Q 001655 589 THVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRIC 667 (1036)
Q Consensus 589 ~~v~~~~~~p~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~li~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~ 667 (1036)
++..+....+..++-..+. .-+...+.+++- .. .+.++... ++.+++..+ +.-.....|+.++
T Consensus 350 --l~~~~~dg~i~~w~~~~~~--~~~~~~v~~~~~-~~---~~~l~~~~~d~~i~~~~~--------~~~~~~~~~~~~~ 413 (615)
T 1pgu_A 350 --LISGSYDGRIMEWSSSSMH--QDHSNLIVSLDN-SK---AQEYSSISWDDTLKVNGI--------TKHEFGSQPKVAS 413 (615)
T ss_dssp --TEEEETTSCEEETTTTEEE--CCCCSCEEEEEC-CS---TTCCEEEETTTEEEETTE--------EEEECSSCEEEEE
T ss_pred --CEEECCCCEEEEEECHHHC--CCCCCCEEEEEE-CC---CCEEEEEECCCCEEEEEC--------CCCCCCCCCEEEE
T ss_conf --4898799959998752415--755685179997-89---867999958997999886--------6676367846999
Q ss_pred EECCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 74699899999830478888303579999968995399989779987076899999768994399998554379988774
Q 001655 668 HQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT 747 (1036)
Q Consensus 668 y~~~~~~~~v~~~~~~~~~~~~~~~~i~lid~~t~~~i~~~~l~~~E~v~si~~~~l~~~~~~~i~VGT~~~~~~e~~~~ 747 (1036)
++++...++.+ .. ..+++++..+.+.+..+.. ...+.++.. . ..++++|+. .
T Consensus 414 ~s~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~---~~~l~~~~~---------~ 465 (615)
T 1pgu_A 414 ANNDGFTAVLT-ND----------DDLLILQSFTGDIIKSVRL--NSPGSAVSL---S---QNYVAVGLE---------E 465 (615)
T ss_dssp ECSSSEEEEEE-TT----------SEEEEEETTTCCEEEEEEC--SSCEEEEEE---C---SSEEEEEET---------T
T ss_pred ECCCCCEEEEE-CC----------CCEEEEECCCCCEEEECCC--CCCCEEEEE---C---CCEEEEEEC---------C
T ss_conf 82898789996-79----------8269994467866555156--787207788---3---888999656---------8
Q ss_pred CEEEEEEEEECCEEEEEEEEEECCCEEEECCC-CCEEEEEE--CCEEEEEEEEECCCCCCCHHCCCC-CCCCEEEEEEEE
Q ss_conf 14999999969969999998735940274434-68199998--797999994525777200020024-322218999998
Q 001655 748 KGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECG-HHGHILALYVQT 823 (1036)
Q Consensus 748 ~Gri~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~g~li~~~--g~~i~i~~~~~~~~~~~~L~~~~~-~~~~~~~~~l~~ 823 (1036)
.|.++++++...++.........++|++++.- +|.++++. ...+++|+.. .+ +.+..... +...+..+....
T Consensus 466 d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~---~~-~~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ---SR-EVKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---TT-EEEECCSCCCSSCEEEEEECC
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECC---CC-CCEEEEECCCCCCEEEEEECC
T ss_conf 98699998888543533367765750799998999989981799859986577---77-624676047887146999768
Q ss_pred ----------ECCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCEEEEEEEEECCEEEEECCCCCEEEEEEC
Q ss_conf ----------2999999852440999999624891999712488610699999618619997068859999518
Q 001655 824 ----------RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 887 (1036)
Q Consensus 824 ----------~~n~IivgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 887 (1036)
.++++++|+.-..+.++..+.....+..+ ......++++.+..++.++.+..+|.+.+++.+
T Consensus 542 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 542 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--NAHKDGVNNLLWETPSTLVSSGADACIKRWNVV 613 (615)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET--TSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC
T ss_pred CCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHH--HCCCCCEEEEEECCCCCEEEECCCCEEEEEEEE
T ss_conf 323453324688889998179719999778885403113--359430589997389972884599639999601
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=72.77 Aligned_cols=420 Identities=15% Similarity=0.189 Sum_probs=192.7
Q ss_pred CCEEEEEECCCEEEEEEECCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEECCC
Q ss_conf 88999998698699999838679999711388234799708989999866399999855778999977998706884289
Q 001655 446 ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG 525 (1036)
Q Consensus 446 ~~~ivi~~~~~~iv~l~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~v~~w~~~~i~i~~l~~l~~v~~~~l~ 525 (1036)
+..++++. ++.+..+....+.............+.++++++ ....++++.. ++.+.+|++.+...+.... .
T Consensus 810 g~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~-~ 880 (1249)
T 3sfz_A 810 GDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP------YDHLAVIALS-QYCVELWNIDSRLKVADCR-G 880 (1249)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECS------STTEEEEECS-SSCEEEEETTTTEEEEEEC-C
T ss_pred CCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEEECC------CCCEEEEEEC-CCEEEEEECCCCCEEEECC-C
T ss_conf 98899975-895999995689723577478777607999827------8888999947-9869999867895653227-8
Q ss_pred CCCCCEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEEEECCCEEEEEECC-CCEEEE-E
Q ss_conf 96672158945644907999995898399999936887643321431285433799998399217999729-865999-6
Q 001655 526 GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPTVIY-S 603 (1036)
Q Consensus 526 ~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~i~-~ 603 (1036)
....+.++.+.+ +..+++.+..||.+..|.......... ... ..+... .+ ......+..... ....+. .
T Consensus 881 h~~~v~~v~~sp--dg~~l~s~s~dg~v~vw~~~~~~~~~~----~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 951 (1249)
T 3sfz_A 881 HLSWVHGVMFSP--DGSSFLTASDDQTIRVWETKKVCKNSA----IVL-KQEIDV-VF-QENETMVLAVDNIRGLQLIAG 951 (1249)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTSCEEEEEHHHHHSCCS----SSE-EEEEEE-EE-ETTEEEEEEEESSSSEEEEEE
T ss_pred CCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCCEEEE----ECC-CCEEEE-EE-CCCCCEEEEECCCCCEEEEEC
T ss_conf 766568999989--999899995897289887466520102----113-310368-97-599868998137762489844
Q ss_pred CCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEE-CCEEEEEEECCCCCEEEEEEE-CCCCCCEEEEECCCCEEEEEEEE
Q ss_conf 2990898220534541452545799999199985-891899998588875889970-89854668974699899999830
Q 001655 604 SNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLK 681 (1036)
Q Consensus 604 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~li~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~ 681 (1036)
..+...+.+ ...+.+++ ++. ..+.++..+ ++.+.+..+..... ...+. -...++.++++++.+.++.++.+
T Consensus 952 ~~~~~~~~~--~~~i~~~~-~sp--~g~~l~~g~~~g~i~i~d~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A 952 KTGQIDYLP--EAQVSCCC-LSP--HLEYVAFGDEDGAIKIIELPNNRV--FSSGVGHKKAVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp SSCCEEEEC--CSCEEEEE-ECT--TSSEEEEEETTSCCEEEETTTTSC--EEECCCCSSCCCCEEECSSSSCEEEECSS
T ss_pred CCCEEEECC--CCCEEEEE-ECC--CCCEEEEECCCCCEEEEECCCCCE--EEECCCCCCCEEEEEECCCCCEEEEECCC
T ss_conf 765089725--67278999-958--997799986999889997578723--44303677716899998999989998699
Q ss_pred CCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCEE
Q ss_conf 47888830357999996899539998977998707689999976899439999855437998877414999999969969
Q 001655 682 NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKL 761 (1036)
Q Consensus 682 ~~~~~~~~~~~~i~lid~~t~~~i~~~~l~~~E~v~si~~~~l~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl 761 (1036)
+.+++.|..+.+.+. .....+.+.++. +.. ...++.|+ ..|.+.++++..+++
T Consensus 1025 ----------g~i~vwd~~~~~~~~--~~~~~~~v~~~~---~~~--~~~l~~~~----------~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A 1025 ----------SVIQVWNWQTGDYVF--LQAHQETVKDFR---LLQ--DSRLLSWS----------FDGTVKVWNVITGRI 1077 (1249)
T ss_dssp ----------SBEEEEETTTTEEEC--CBCCSSCEEEEE---ECS--SSEEEEEE----------SSSEEEEEETTTTCC
T ss_pred ----------CEEEEEECCCCCEEE--EECCCCCEEEEE---ECC--CCCEEEEE----------CCCCEEEEECCCCCE
T ss_conf ----------879999879996689--852787389999---908--99589997----------889689988898865
Q ss_pred EEEEEEEECCCEEEECCC-CCE-EEEE-ECCEEEEEEEEECCCCCCCHHCCCCCCCCEEEEEEEEECCEEEEEECCCCEE
Q ss_conf 999998735940274434-681-9999-8797999994525777200020024322218999998299999985244099
Q 001655 762 QLIAEKETKGAVYSLNAF-NGK-LLAA-INQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSIS 838 (1036)
Q Consensus 762 ~~~~~~~~~g~v~~i~~~-~g~-li~~-~g~~i~i~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~n~IivgD~~~Sv~ 838 (1036)
.... ....++|++++.- +|. ++++ ...++++|++. .+ ..+.....+...+..+..+..+.++++|+.-..+.
T Consensus 1078 ~~~~-~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~---~~-~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~ 1152 (1249)
T 3sfz_A 1078 ERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LL-SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIR 1152 (1249)
T ss_dssp CEEE-ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS---SS-SCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCC
T ss_pred EEEE-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC---CC-CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 5887-4668848999998999989998499948998789---85-00125506877679999979999899982899799
Q ss_pred EEEEECCCCEEEEEE--------CCCCCCEEEEEEEEECCEE-EEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEE-CC
Q ss_conf 999962489199971--------2488610699999618619-9970688599995189999900045102899787-28
Q 001655 839 LLIYKHEEGAIEERA--------RDYNANWMSAVEILDDDIY-LGAENNFNLFTVRKNSEGATDEERGRLEVVGEYH-LG 908 (1036)
Q Consensus 839 ~~~~~~~~~~l~~~a--------~D~~~~~v~~~~~l~~~~~-l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~-lg 908 (1036)
++... .++..... ......+++++.|-.++.+ +.++ |.+.++...... .+. .+. .+
T Consensus 1153 vwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~-------~~~---~~~~~~ 1218 (1249)
T 3sfz_A 1153 IWNVS--DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGD-------SSQ---TFYTNG 1218 (1249)
T ss_dssp EEESS--SSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCB-------CCC---CCCCSS
T ss_pred EEECC--CCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC--CEEEEEECCCCC-------EEE---EEECCC
T ss_conf 99889--9945788514444421025674289999978999899779--859998988895-------004---640047
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEE
Q ss_conf 710248854464127899888845699991254258999
Q 001655 909 EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 947 (1036)
Q Consensus 909 ~~v~~~~~~~~~~~~~~~~~~~~~~ii~~t~~GsI~~i~ 947 (1036)
..++++.. . .....++.++.+|.+...-
T Consensus 1219 ~~i~~~~~---s--------~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1219 TNLKKIHV---S--------PDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp CCCCCCEE---C--------SSSCCEEEECTTCCEEEEC
T ss_pred CCCCEEEE---C--------CCCCEEEEECCCCEEEEEE
T ss_conf 75327999---7--------8987799966881799976
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=65.16 Aligned_cols=192 Identities=10% Similarity=0.105 Sum_probs=84.9
Q ss_pred CCCEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEECC
Q ss_conf 54668974699899999830478888303579999968995399989779987076899999768994399998554379
Q 001655 662 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 741 (1036)
Q Consensus 662 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~i~lid~~t~~~i~~~~l~~~E~v~si~~~~l~~~~~~~i~VGT~~~~~ 741 (1036)
....+++++..+.+++++.. +.+++++..+.+.+..+.- ....+.++. +..+ ..+++.|+
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~----------g~i~i~d~~~~~~~~~~~~-h~~~v~~l~---~s~d-g~~l~s~~----- 1022 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDED----------GAIKIIELPNNRVFSSGVG-HKKAVRHIQ---FTAD-GKTLISSS----- 1022 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETT----------SCCEEEETTTTSCEEECCC-CSSCCCCEE---ECSS-SSCEEEEC-----
T ss_pred CEEEEEECCCCCEEEEECCC----------CCEEEEECCCCCEEEECCC-CCCCEEEEE---ECCC-CCEEEEEC-----
T ss_conf 27899995899779998699----------9889997578723443036-777168999---9899-99899986-----
Q ss_pred CCCCCCCEEEEEEEEECCEEEEEEEEEECCCEEEECCCC-CEEEE-EECCEEEEEEEEECCCCCCCHHCCCCCCCCEEEE
Q ss_conf 988774149999999699699999987359402744346-81999-9879799999452577720002002432221899
Q 001655 742 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN-GKLLA-AINQKIQLYKWMLRDDGTRELQSECGHHGHILAL 819 (1036)
Q Consensus 742 ~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~~i~~~~-g~li~-~~g~~i~i~~~~~~~~~~~~L~~~~~~~~~~~~~ 819 (1036)
..|.+.++++..++... .....+++.++.... +++++ +....+++++.. .+. .+.........+..+
T Consensus 1023 -----~dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~---~~~-~~~~~~~~~~~v~~~ 1091 (1249)
T 3sfz_A 1023 -----EDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI---TGR-IERDFTCHQGTVLSC 1091 (1249)
T ss_dssp -----SSSBEEEEETTTTEEEC--CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETT---TTC-CCEEEECCSSCCCCE
T ss_pred -----CCCEEEEEECCCCCEEE--EECCCCCEEEEEECCCCCEEEEECCCCEEEEECC---CCC-EEEEECCCCCCEEEE
T ss_conf -----99879999879996689--8527873899999089958999788968998889---886-558874668848999
Q ss_pred EEEEECCEEEEEECCCCEEEEEEECCCCEE-EEEECCCCCCEEEEEEEEECC-EEEEECCCCCEEEEEECC
Q ss_conf 999829999998524409999996248919-997124886106999996186-199970688599995189
Q 001655 820 YVQTRGDFIVVGDLMKSISLLIYKHEEGAI-EERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRKNS 888 (1036)
Q Consensus 820 ~l~~~~n~IivgD~~~Sv~~~~~~~~~~~l-~~~a~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~ 888 (1036)
..+..++++++|..-..+.++.++ ..+. ..+ ......++++.+-.++ .++.++.+|.+.++....
T Consensus 1092 ~~s~d~~~l~s~s~d~~v~iwd~~--~~~~~~~l--~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1092 AISSDATKFSSTSADKTAKIWSFD--LLSPLHEL--KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp EECSSSSSCEEECCSSCCCEECSS--SSSCSBCC--CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred EECCCCCEEEEECCCCCEEEEECC--CCCEEEEE--CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 998999989998499948998789--85001255--06877679999979999899982899799998899
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=63.62 Aligned_cols=418 Identities=10% Similarity=0.067 Sum_probs=200.3
Q ss_pred CCEEEEEECCC---EEEEEECCCEEEEEEECCCEEEEEEECCCCC---EEEEEECCCCCCCCCCCCEEEEEEECCCEEEE
Q ss_conf 85899996788---9999986986999998386799997113882---34799708989999866399999855778999
Q 001655 437 YSVNVATANAS---QVLLATGGGHLVYLEIGDGILTEVKHAQLEY---EISCLDINPIGENPSYSQIAAVGMWTDISVRI 510 (1036)
Q Consensus 437 ~~I~~as~~~~---~ivi~~~~~~iv~l~~~~~~l~~~~~~~l~~---~is~l~~~~~~~~~~~~~~~~v~~w~~~~i~i 510 (1036)
..|...+.++. .++.+..++.+.+++...++....- ..... .+.|+++.+- ...+++.+.. ++.+.+
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~-dg~i~v 233 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPD-----SGEFVITVGS-DRKISC 233 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECST-----TCCEEEEEET-TCCEEE
T ss_pred CCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEE-CCCCCCCCEEEEEEECCC-----CCCEEEEEEC-CCEEEE
T ss_conf 438899988789968999957995999969996101320-256777742899997897-----7888999868-980899
Q ss_pred EECCCCCEEEEECC---CCCCCCEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCC----CCEEEEEE
Q ss_conf 97799870688428---996672158945644907999995898399999936887643321431285----43379999
Q 001655 511 FSLPDLNLITKEHL---GGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGT----QPITLRTF 583 (1036)
Q Consensus 511 ~~l~~l~~v~~~~l---~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~----~pv~l~~~ 583 (1036)
|++.+.+.+..... .....+.++.+. +..+++.+..||.+..|.+... .. ........ .++.-..+
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~~wd~~~~--~~--~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWL---DSQKFATVGADATIRVWDVTTS--KC--VQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp EETTTCCEEEECCBTTBCCCSCEEEEEES---SSSEEEEEETTSEEEEEETTTT--EE--EEEEECCTTCGGGCEEEEEE
T ss_pred EECCCCCEEEEECCCCCCCCCCEEEEEEC---CCCEEEEECCCCCEEEEECCCC--CE--EEEECCCCCCCCCCEEEEEE
T ss_conf 98999978589525444567755899981---8997999848994899978889--27--87884787754571469991
Q ss_pred EECCCEEEEEECCCCE-EEEECC-CCE-EEEEECCCCCEEEECCCCCCCCCEEEEEE-CCEEEEEEECCCCCEEEEEEEC
Q ss_conf 8399217999729865-999629-908-98220534541452545799999199985-8918999985888758899708
Q 001655 584 SSKNTTHVFAASDRPT-VIYSSN-KKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL 659 (1036)
Q Consensus 584 ~~~~~~~v~~~~~~p~-~i~~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~li~~~-~~~l~i~~l~~~~~~~~~~i~l 659 (1036)
. ....+++.+.... .++... +.. ....-+...+.+++- |+ ++... ++.+++-.+. ..+ ..-
T Consensus 307 ~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~------~~-l~~~~~dg~i~~w~~~-----~~~-~~~ 371 (615)
T 1pgu_A 307 T--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV------NP-LISGSYDGRIMEWSSS-----SMH-QDH 371 (615)
T ss_dssp E--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET------TT-TEEEETTSCEEETTTT-----EEE-CCC
T ss_pred C--CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEE------CC-CEEECCCCEEEEEECH-----HHC-CCC
T ss_conf 8--9976999978997899988899288999477787899995------67-4898799959998752-----415-755
Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 98546689746998999998304788883035799999689953999897799870768999997689943999985543
Q 001655 660 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYV 739 (1036)
Q Consensus 660 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~i~lid~~t~~~i~~~~l~~~E~v~si~~~~l~~~~~~~i~VGT~~~ 739 (1036)
......+++ +..+.++.++.+ +.+++++..+.+ +.. .+.+ +.+..+ ..+++.|.
T Consensus 372 ~~~v~~~~~-~~~~~l~~~~~d----------~~i~~~~~~~~~------~~~--~~~~---~~~s~~-~~~~~~~~--- 425 (615)
T 1pgu_A 372 SNLIVSLDN-SKAQEYSSISWD----------DTLKVNGITKHE------FGS--QPKV---ASANND-GFTAVLTN--- 425 (615)
T ss_dssp CSCEEEEEC-CSTTCCEEEETT----------TEEEETTEEEEE------CSS--CEEE---EEECSS-SEEEEEET---
T ss_pred CCCEEEEEE-CCCCEEEEEECC----------CCEEEEECCCCC------CCC--CCEE---EEECCC-CCEEEEEC---
T ss_conf 685179997-898679999589----------979998866676------367--8469---998289-87899967---
Q ss_pred CCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCEEEECCCCCEEEEEE--CCEEEEEEEEECCCCCCCHH--CCCCCCCC
Q ss_conf 799887741499999996996999999873594027443468199998--79799999452577720002--00243222
Q 001655 740 LPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI--NQKIQLYKWMLRDDGTRELQ--SECGHHGH 815 (1036)
Q Consensus 740 ~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~~i~~~~g~li~~~--g~~i~i~~~~~~~~~~~~L~--~~~~~~~~ 815 (1036)
.+.+.+++...++ .+......+++.+++.-..+++++. +..+++|++.. .++. ........
T Consensus 426 --------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~-----~~~~~~~~~~~~~~ 490 (615)
T 1pgu_A 426 --------DDDLLILQSFTGD--IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD-----LEVSFDLKTPLRAK 490 (615)
T ss_dssp --------TSEEEEEETTTCC--EEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTE-----EEEEEECSSCCSSC
T ss_pred --------CCCEEEEECCCCC--EEEECCCCCCCEEEEECCCEEEEEECCCCEEEEEECCC-----CCCCCCCCCCCCCC
T ss_conf --------9826999446786--65551567872077883888999656898699998888-----54353336776575
Q ss_pred EEEEEEEEECCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCEEEEEEEEE----------CC-EEEEECCCCCEEEE
Q ss_conf 18999998299999985244099999962489199971248861069999961----------86-19997068859999
Q 001655 816 ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD----------DD-IYLGAENNFNLFTV 884 (1036)
Q Consensus 816 ~~~~~l~~~~n~IivgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~----------~~-~~l~~D~~gnl~~l 884 (1036)
+..+..+..++++++|+.-..+.++ +....+....-.......++++.+-. ++ .++.++.+|.+.++
T Consensus 491 v~~~~~s~~g~~l~~~~~dg~i~iw--~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw 568 (615)
T 1pgu_A 491 PSYISISPSETYIAAGDVMGKILLY--DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568 (615)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEE--ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred EEEEEECCCCCEEEECCCCCEEEEE--ECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEE
T ss_conf 0799998999989981799859986--57777624676047887146999768323453324688889998179719999
Q ss_pred EECCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEE
Q ss_conf 51899999000451028997872871024885446412789988884569999125425899
Q 001655 885 RKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVI 946 (1036)
Q Consensus 885 ~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~ii~~t~~GsI~~i 946 (1036)
...... ++.....-| .+.|+++.- .+ ... ++.++.+|.|...
T Consensus 569 ~~~~~~-------~~~~~~~~h-~~~v~~l~~---s~--------~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 569 SVKRPM-------KIIKALNAH-KDGVNNLLW---ET--------PST-LVSSGADACIKRW 610 (615)
T ss_dssp ESSCTT-------CCEEETTSS-TTCEEEEEE---EE--------TTE-EEEEETTSCEEEE
T ss_pred ECCCCC-------EECHHHHCC-CCCEEEEEE---CC--------CCC-EEEECCCCEEEEE
T ss_conf 778885-------403113359-430589997---38--------997-2884599639999
No 6
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=1.00 E-value=1 Score=59.47 Aligned_cols=330 Identities=11% Similarity=0.101 Sum_probs=155.5
Q ss_pred CEEEEEECCCEEEEEECCCEEEEEEECCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCEEEEEECCCCC
Q ss_conf 58999967889999986986999998386799997113882347997089899998663999998557789999779987
Q 001655 438 SVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN 517 (1036)
Q Consensus 438 ~I~~as~~~~~ivi~~~~~~iv~l~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~v~~w~~~~i~i~~l~~l~ 517 (1036)
.+.+.+.++..++.+..++.+...++..++....- ......|.|+++.+ ...++.|.. ++.+.+|++.+.+
T Consensus 124 v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~-------~~~l~s~s~-dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 124 VITCLQFEDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAH-------GGILVSGST-DRTVRVWDIKKGC 194 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECS-------TTEEEEEET-TSCEEEEETTTTE
T ss_pred CEEEEEECCCEEEEECCCCCEEEEECCCCCEEEEE-ECCCCCEEEEEECC-------CCEEEEEEC-CCCEEEEECCCCC
T ss_conf 39999989999999759992899999988389999-27776789999869-------998999947-8988999789895
Q ss_pred EEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEEEECCCEEEEEE-CC
Q ss_conf 06884289966721589456449079999958983999999368876433214312854337999983992179997-29
Q 001655 518 LITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA-SD 596 (1036)
Q Consensus 518 ~v~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-~~ 596 (1036)
.+....- ......++.+....+..+++.|..||.+..|.+........ .+. ......++.. ..
T Consensus 195 ~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~------~~~---------~~~~~~~~~~~~~ 258 (464)
T 3v7d_B 195 CTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD------HGE---------EHDYPLVFHTPEE 258 (464)
T ss_dssp EEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---------------------CCSSEEESCGGG
T ss_pred EEEEECC-CCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCCCCCC------CCC---------CCCCCEEEECCCC
T ss_conf 7999899-89866899976379988899975998289910788853333------556---------6774047623677
Q ss_pred CCEEEEECCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEE-CCEEEEEEECCCCCEEEEEEEC-CCCCCEEEEECCCCE
Q ss_conf 86599962990898220534541452545799999199985-8918999985888758899708-985466897469989
Q 001655 597 RPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRT 674 (1036)
Q Consensus 597 ~p~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~li~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~ 674 (1036)
.++++....+ +...+.++.+ .++.++... ++.+++-.+... -..+.+.- ...+..++++++.+.
T Consensus 259 ~~~~~~~~~~-------~~~~v~~~~~-----~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 259 NPYFVGVLRG-------HMASVRTVSG-----HGNIVVSGSYDNTLIVWDVAQM--KCLYILSGHTDRIYSTIYDHERKR 324 (464)
T ss_dssp CTTEEEEECC-------CSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEETTTTE
T ss_pred CEEEEEECCC-------CCCEEEEECC-----CCCEEEEEECCCEEEEEECCCC--CEEEEECCCCCCEEEEEECCCCCE
T ss_conf 8079997158-------6230899858-----8999999938981999979988--588996488787899998699999
Q ss_pred EEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEEE
Q ss_conf 99998304788883035799999689953999897799870768999997689943999985543799887741499999
Q 001655 675 FAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVF 754 (1036)
Q Consensus 675 ~~v~~~~~~~~~~~~~~~~i~lid~~t~~~i~~~~l~~~E~v~si~~~~l~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~ 754 (1036)
++.++.+ +.++++|..+.+.+..+.-. ...+.++. +. ..+++.|. ..|.+.++
T Consensus 325 l~sg~~d----------g~i~vwd~~~~~~~~~~~~h-~~~v~~~~---~~---~~~l~s~s----------~dg~v~vw 377 (464)
T 3v7d_B 325 CISASMD----------TTIRIWDLENGELMYTLQGH-TALVGLLR---LS---DKFLVSAA----------ADGSIRGW 377 (464)
T ss_dssp EEEEETT----------SCEEEEETTTTEEEEEECCC-SSCEEEEE---EC---SSEEEEEE----------TTSEEEEE
T ss_pred EEEEECC----------CCEEEEECCCCCEEEEEECC-CCCEEEEE---EC---CCEEEEEE----------CCCCEEEE
T ss_conf 9999389----------94899989999688998177-77478999---84---99999996----------99968999
Q ss_pred EEECCEEEEEEEEEECCCEE--EECCCCCEEEEEECCEEEEEEEEECCCCCCCHHCCCCCCCCEEEEEEEEECCEEEEEE
Q ss_conf 99699699999987359402--7443468199998797999994525777200020024322218999998299999985
Q 001655 755 IVEDGKLQLIAEKETKGAVY--SLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 832 (1036)
Q Consensus 755 ~i~~~kl~~~~~~~~~g~v~--~i~~~~g~li~~~g~~i~i~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~n~IivgD 832 (1036)
++...+..... ....++. ++..-+..++++.+..+.++++. .+ ++...........+.++...++.++++-
T Consensus 378 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~---~g--~~~~~~~~~~~~~v~~v~~~~~~l~~~~ 450 (464)
T 3v7d_B 378 DANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNLR---SG--KLVHANILKDADQIWSVNFKGKTLVAAV 450 (464)
T ss_dssp ETTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEETTEEEEEETT---TC--CEEESCTTTTCSEEEEEEEETTEEEEEE
T ss_pred ECCCCCEEEEE--CCCCCCCEEEEEECCCEEEEECCCEEEEEECC---CC--CEEEHHHCCCCCCEEEEEECCCEEEEEE
T ss_conf 88988245542--37897548999817999999239969999878---99--2972110457884799996599899999
Q ss_pred CCCCEEEE
Q ss_conf 24409999
Q 001655 833 LMKSISLL 840 (1036)
Q Consensus 833 ~~~Sv~~~ 840 (1036)
..++..++
T Consensus 451 ~~~g~~~i 458 (464)
T 3v7d_B 451 EKDGQSFL 458 (464)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
T ss_conf 85995899
No 7
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=58.26 Aligned_cols=138 Identities=12% Similarity=0.174 Sum_probs=62.9
Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 98546689746998999998304788883035799999689953999897799870768999997689943999985543
Q 001655 660 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYV 739 (1036)
Q Consensus 660 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~i~lid~~t~~~i~~~~l~~~E~v~si~~~~l~~~~~~~i~VGT~~~ 739 (1036)
...++.++++|+.+.+++++ . +.+.+++...|..... ..+.+ +.+.. ...++++|+
T Consensus 356 ~~~~~~~~~spdg~~la~~~-~----------~~~~i~~~~~~~~~~~------~~i~~---~~~sp-dg~~la~~~--- 411 (814)
T 3mkq_A 356 DVFPQSLAHSPNGRFVTVVG-D----------GEYVIYTALAWRNKAF------GKCQD---FVWGP-DSNSYALID--- 411 (814)
T ss_dssp SSCCSEEEECTTSSEEEEEE-T----------TEEEEEETTTTEEEEE------EECSE---EEECT-TSSCEEEEC---
T ss_pred CCCCCEEEECCCCCEEEEEC-C----------CEEEEEECCCCCCCCC------CCEEE---EEEEC-CCCEEEEEE---
T ss_conf 65774068999999899942-9----------8899998745445679------95479---99947-998599996---
Q ss_pred CCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCEEEECCC-CC----EEEE-EECCEEEEEEEEECCCCCCCHHCCCCCC
Q ss_conf 7998877414999999969969999998735940274434-68----1999-9879799999452577720002002432
Q 001655 740 LPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG----KLLA-AINQKIQLYKWMLRDDGTRELQSECGHH 813 (1036)
Q Consensus 740 ~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~g----~li~-~~g~~i~i~~~~~~~~~~~~L~~~~~~~ 813 (1036)
..|.+.+++. .....+.+.+++.- +| +|++ +.+..+++|+++ .+ ++... +.
T Consensus 412 -------~~g~v~l~~~---------~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~---~~--~~~~~--~~ 468 (814)
T 3mkq_A 412 -------ETGQIKYYKN---------FKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWD---NG--TLVRR--ID 468 (814)
T ss_dssp -------TTCCEEEEET---------TEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTT---TC--CEEEE--ES
T ss_pred -------CCCCEEEEEC---------CCCCCCEEECCCCCCCCEECCEEEEEECCCEEEEEECC---CC--CEEEE--EE
T ss_conf -------8983999977---------77752439737867552365469999669989999987---69--59999--73
Q ss_pred CCEEEEEEEEECCEEEEEE-----CCCCEEEEEEEC
Q ss_conf 2218999998299999985-----244099999962
Q 001655 814 GHILALYVQTRGDFIVVGD-----LMKSISLLIYKH 844 (1036)
Q Consensus 814 ~~~~~~~l~~~~n~IivgD-----~~~Sv~~~~~~~ 844 (1036)
.+...+..+..++++++++ ..+++.++.|+.
T Consensus 469 ~~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~ 504 (814)
T 3mkq_A 469 VNAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNK 504 (814)
T ss_dssp SCEEEEEECTTSSEEEEEECCCSSCSCSEEEEEECH
T ss_pred CCCCEEEECCCCCEEEEEECCCCCCCCEEEEEEECH
T ss_conf 588879996999999999867666774289999546
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=56.41 Aligned_cols=395 Identities=14% Similarity=0.155 Sum_probs=198.9
Q ss_pred CEEEEEEC--CCEEEEEECCCEEEEEEECCCEEEEEE-EC-----CCCCEEEEEECCCCCCCCCCCCEEEEEEECCCEEE
Q ss_conf 58999967--889999986986999998386799997-11-----38823479970898999986639999985577899
Q 001655 438 SVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVK-HA-----QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVR 509 (1036)
Q Consensus 438 ~I~~as~~--~~~ivi~~~~~~iv~l~~~~~~l~~~~-~~-----~l~~~is~l~~~~~~~~~~~~~~~~v~~w~~~~i~ 509 (1036)
.|.+.+.+ +..++.+..++.+.+.....++....- .. .....|.+++++| .+.+++.+.. ++.+.
T Consensus 192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp------dg~~l~s~s~-D~~v~ 264 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP------DGTKIASASA-DKTIK 264 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT------TSSEEEEEET-TSEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECC------CCCEEEEEEC-CCEEE
T ss_conf 1699999799998999989991999889998286651366432356678789999979------9999999908-98099
Q ss_pred EEECCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCC-CCEEEEEEEECCC
Q ss_conf 997799870688428996672158945644907999995898399999936887643321431285-4337999983992
Q 001655 510 IFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGT-QPITLRTFSSKNT 588 (1036)
Q Consensus 510 i~~l~~l~~v~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~-~pv~l~~~~~~~~ 588 (1036)
+|++.+.+.+...............+. + +...++.+..||.+..+... .+.. .....|. .++.-..+. .+.
T Consensus 265 lWd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~s~s~d~~i~~~~~~--~~~~---~~~~~gh~~~v~~l~~s-pdg 336 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGTRIEDQQLGII-W-TKQALVSISANGFINFVNPE--LGSI---DQVRYGHNKAITALSSS-ADG 336 (611)
T ss_dssp EEETTTTEEEEEEECCSSGGGCEEEEE-E-CSSCEEEEETTCCEEEEETT--TTEE---EEEECCCSSCEEEEEEC-TTS
T ss_pred EEECCCCCEEEEECCCCCCCCEEEEEE-E-CCCEEEEEECCCCEEEEECC--CCCC---CEEECCCCCCEEEEEEE-CCC
T ss_conf 996888701344047887664068999-7-38879999589968999688--9974---46983788888999991-899
Q ss_pred EEEEEECC-CCEEEEECC-CCEEEE--EECCCCCEEEECCCCCCCCCEEEEEE-CCEEEEEEECCCC--CEEEEEEECCC
Q ss_conf 17999729-865999629-908982--20534541452545799999199985-8918999985888--75889970898
Q 001655 589 THVFAASD-RPTVIYSSN-KKLLYS--NVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQ--KLHIRSIPLGE 661 (1036)
Q Consensus 589 ~~v~~~~~-~p~~i~~~~-~~~~~~--~~~~~~i~~~~~~~~~~~~~~li~~~-~~~l~i~~l~~~~--~~~~~~i~l~~ 661 (1036)
..++..+. ....++.-. +..... ..+...+.+++ |.. ...++... ++.+++-.+.... ........+..
T Consensus 337 ~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~-~s~---~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK-TTS---KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE-ECT---TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred CEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEE-ECC---CCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCC
T ss_conf 98999958984999978879256321667765078999-878---99699998489668954688543565212001489
Q ss_pred CCCEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEECC
Q ss_conf 54668974699899999830478888303579999968995399989779987076899999768994399998554379
Q 001655 662 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 741 (1036)
Q Consensus 662 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~i~lid~~t~~~i~~~~l~~~E~v~si~~~~l~~~~~~~i~VGT~~~~~ 741 (1036)
.|..+++.++.+..++.+. ..+++++.. + +.... ....+.++ .+..+ ..++++|+
T Consensus 413 ~~~~~~~s~dg~~~~~~~~-----------~~v~~~~~~--~-~~~~~--~~~~v~~v---a~spd-g~~lasgs----- 467 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACY-----------KHIAIYSHG--K-LTEVP--ISYNSSCV---ALSND-KQFVAVGG----- 467 (611)
T ss_dssp CEEEEEECTTSSCEEEEES-----------SEEEEEETT--E-EEEEE--CSSCEEEE---EECTT-SCEEEEEE-----
T ss_pred CCCEEEEECCCCEEEEEEC-----------CEEEEEECC--C-EEEEE--CCCCCEEE---EEECC-CCEEEEEC-----
T ss_conf 9707998079969999967-----------639998489--4-34640--68895499---99289-98999968-----
Q ss_pred CCCCCCCEEEEEEEEECCEEEEEEEEEECCCEEEECCC-CCEEEEEE--CCEEEEEEEEECCCCCCCHHCC---CCCCCC
Q ss_conf 98877414999999969969999998735940274434-68199998--7979999945257772000200---243222
Q 001655 742 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSE---CGHHGH 815 (1036)
Q Consensus 742 ~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~g~li~~~--g~~i~i~~~~~~~~~~~~L~~~---~~~~~~ 815 (1036)
..|.+.++++...+++.+......++|++++-- +|.++++. ..++++++.. +.+ ++... ..+...
T Consensus 468 -----~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~--~~~--~~~~~~~~~~H~~~ 538 (611)
T 1nr0_A 468 -----QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA--NNF--ELAHTNSWTFHTAK 538 (611)
T ss_dssp -----TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG--GTT--EESCCCCCCCCSSC
T ss_pred -----CCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCC--CEEEEEEEEECCCC
T ss_conf -----997399999459922241015778860799998999989999489989998857--787--22321026404664
Q ss_pred EEEEEEEEECCEEEEEECCCCEEEEEEECCCCEEEEEECCCC-CCEEEEEEEEECCEEEEECCCCCEEEEEE
Q ss_conf 189999982999999852440999999624891999712488-61069999961861999706885999951
Q 001655 816 ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN-ANWMSAVEILDDDIYLGAENNFNLFTVRK 886 (1036)
Q Consensus 816 ~~~~~l~~~~n~IivgD~~~Sv~~~~~~~~~~~l~~~a~D~~-~~~v~~~~~l~~~~~l~~D~~gnl~~l~~ 886 (1036)
+..+..+..+.+++.|..-+.+.++.++......... ..-. ...++++.|..++.++.+..++.+.+...
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~-~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-TTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHH-HCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEC
T ss_conf 2589989989979999799729999788755563264-4467656711899858997999528877899844
No 9
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=55.80 Aligned_cols=257 Identities=14% Similarity=0.162 Sum_probs=123.2
Q ss_pred CCEEEEEECCCCCCCCCCCCEEEEEEECCCEEEEEECCC---C---CEEEEECCCCCCCCEEEEEEEECCEEEEEEEECC
Q ss_conf 823479970898999986639999985577899997799---8---7068842899667215894564490799999589
Q 001655 477 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD---L---NLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD 550 (1036)
Q Consensus 477 ~~~is~l~~~~~~~~~~~~~~~~v~~w~~~~i~i~~l~~---l---~~v~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~ 550 (1036)
...|+|+++.+. ...+++.|.. ++.+.+|++.+ . +...... ....+.++.+.+ +..+|+.+..|
T Consensus 63 ~~~V~~~~~s~~-----~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~--~~~~l~s~s~d 132 (437)
T 3gre_A 63 PNSITSSAVSPG-----ETPYLITGSD-QGVIKIWNLKEIIVGEVYSSSLTYD--CSSTVTQITMIP--NFDAFAVSSKD 132 (437)
T ss_dssp TSCEEEEEEECS-----SSCEEEEEET-TSEEEEEEHHHHHTTCCCSCSEEEE--CSSCEEEEEECT--TSSEEEEEETT
T ss_pred CCCEEEEEECCC-----CCCEEEEECC-CCEEEEEECCCCCCCCCCCEEEECC--CCCCEEEEEEEC--CCCEEEEEECC
T ss_conf 985279998789-----9988999669-9639996876544575213134306--899778999958--99889999089
Q ss_pred CCEEEEEEECC-CCCCCCCEEEECCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCC
Q ss_conf 83999999368-87643321431285433799998399217999729865999629908982205345414525457999
Q 001655 551 GHLLNFLLNMK-TGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAF 629 (1036)
Q Consensus 551 G~l~~y~~~~~-~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 629 (1036)
|.+..|.+... .+... +. ....++ ..+... . .+ ....+.++..+..+ .
T Consensus 133 g~i~vwd~~~~~~~~~~--~~--~~~~~i--~~~~~~---------~--------~~-------~~~~~~~~~~~~~~-~ 181 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEV--KF--LNCECI--RKINLK---------N--------FG-------KNEYAVRMRAFVNE-E 181 (437)
T ss_dssp SEEEEEEEEEEEETTEE--EE--EEEEEE--EEEEGG---------G--------GS-------SCCCEEEEEEEECS-S
T ss_pred CEEEEEEECCCCCCCEE--EC--CCCCEE--EEEECC---------C--------CC-------CCCCCEEEEEEECC-C
T ss_conf 97999992345577214--31--353406--789746---------7--------66-------56671688999759-9
Q ss_pred CCEEEEEE-CCEEEEEEECCCCCEEEEEEEC---CCCCCEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCEEE
Q ss_conf 99199985-8918999985888758899708---9854668974699899999830478888303579999968995399
Q 001655 630 PDSLAIAK-EGELTIGTIDDIQKLHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFI 705 (1036)
Q Consensus 630 ~~~li~~~-~~~l~i~~l~~~~~~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~i~lid~~t~~~i 705 (1036)
...++..+ ++.+++-.+.... ..+++.. ...+..+++++..+.++.++.+ +.++++|..+.+.+
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----------g~i~iwd~~~~~~~ 249 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDEECCVLILGTTR----------GIIDIWDIRFNVLI 249 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECTTSCEEEEEETT----------SCEEEEETTTTEEE
T ss_pred CCEEEEEECCCEEEEEECCCCE--EEEEECCCCCCCCEEEEEECCCCCEEEEECCC----------CEEEEEECCCCCEE
T ss_conf 9889999589849999677882--64797458878954899988998899998689----------84999976776378
Q ss_pred EEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEEEE------------------
Q ss_conf 98977998707689999976899439999855437998877414999999969969999998------------------
Q 001655 706 STYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK------------------ 767 (1036)
Q Consensus 706 ~~~~l~~~E~v~si~~~~l~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~------------------ 767 (1036)
..+.+.....+.+++...--.....+++.|+ ..|.|.++++..++.......
T Consensus 250 ~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 250 RSWSFGDHAPITHVEVCQFYGKNSVIVVGGS----------SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE 319 (437)
T ss_dssp EEEBCTTCEEEEEEEECTTTCTTEEEEEEES----------TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGG
T ss_pred EEEECCCCCCEEEEEECCCCCCCCCEEEEEC----------CCCCEEEEECCCCCEEEEEECCCCCCCCCEECCCCCCCC
T ss_conf 8885189986678886135588854999974----------898189998478808899985888975110041204431
Q ss_pred -------EECCCEEEECCCCCEEEEEEC--CEEEEEEE
Q ss_conf -------735940274434681999987--97999994
Q 001655 768 -------ETKGAVYSLNAFNGKLLAAIN--QKIQLYKW 796 (1036)
Q Consensus 768 -------~~~g~v~~i~~~~g~li~~~g--~~i~i~~~ 796 (1036)
...++|++++.-++.++++.+ ..|+++++
T Consensus 320 ~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEET
T ss_pred CCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEEEC
T ss_conf 00002444678337999879669996389974999979
No 10
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=55.03 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=17.2
Q ss_pred EEEEEEEEECCEEEEEEEEEECCCEEEECCC-CC-EEEEEEC--CEEEEEEE
Q ss_conf 4999999969969999998735940274434-68-1999987--97999994
Q 001655 749 GRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAIN--QKIQLYKW 796 (1036)
Q Consensus 749 Gri~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~g-~li~~~g--~~i~i~~~ 796 (1036)
|.+.++++...+..... ....++|++++.- ++ .++++.+ ..+.+|++
T Consensus 285 g~v~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 285 NTVLLWNPESAEQLSQF-PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp SEEEEECSSSCCEEEEE-ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred CCEEEEECCCCCCCEEE-CCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC
T ss_conf 98899547998322321-4888736888978899887999965884899976
Done!