Your job contains 1 sequence.
>001656
MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR
KSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQVIQELKTSNYR
PKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGD
EPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIF
DEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRAL
LLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKL
QNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWC
FNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVP
VGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTS
HGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGL
DFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQ
ASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLT
RFFREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQACYSLHEVK
NRNTSSHSGEIVPANRSSLSPYKGIWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFID
LTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQCVKKISEIASDAESSQPSSFIPIT
NKVKHEKPQISDSGSRIIAQGSAPSKVDGTTYRIEAEIQSEKSKGSHSSAPPCGGEETKG
SAFLIQVQEKLSATEYKEFVGFMKAMKSKAMKISHVLQSIAKLFAGPERLPLLRRFKDYV
PAKYHPLYEQYLMNNS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001656
(1036 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2016209 - symbol:AT1G79950 species:3702 "Arabi... 2569 4.0e-285 2
UNIPROTKB|Q16X92 - symbol:AAEL008960 "Regulator of telome... 744 4.9e-144 3
UNIPROTKB|E1BTS7 - symbol:Gga.49055 "Uncharacterized prot... 787 2.1e-141 2
UNIPROTKB|B0W9F4 - symbol:CPIJ003765 "Regulator of telome... 734 3.5e-141 3
ZFIN|ZDB-GENE-050306-11 - symbol:rtel1 "regulator of telo... 834 5.1e-141 2
UNIPROTKB|E1BTS6 - symbol:Gga.49055 "Uncharacterized prot... 787 6.1e-141 2
UNIPROTKB|F1NE49 - symbol:Gga.49055 "Uncharacterized prot... 787 6.8e-141 2
UNIPROTKB|Q7QEI1 - symbol:AGAP000634 "Regulator of telome... 726 1.9e-137 3
UNIPROTKB|B3NSW1 - symbol:GG18780 "Regulator of telomere ... 750 2.8e-137 2
UNIPROTKB|B4PZB4 - symbol:GE16425 "Regulator of telomere ... 749 1.9e-136 2
FB|FBgn0029798 - symbol:CG4078 species:7227 "Drosophila m... 753 3.2e-136 2
UNIPROTKB|B4NDG5 - symbol:GK24923 "Regulator of telomere ... 751 6.6e-136 2
UNIPROTKB|B4M891 - symbol:GJ16649 "Regulator of telomere ... 746 8.4e-136 2
UNIPROTKB|B4L1Z2 - symbol:GI15901 "Regulator of telomere ... 750 2.2e-135 2
UNIPROTKB|B3MSG8 - symbol:GF20802 "Regulator of telomere ... 745 2.2e-135 2
UNIPROTKB|Q29FS3 - symbol:GA17940 "Regulator of telomere ... 751 1.6e-134 2
UNIPROTKB|B4GU19 - symbol:GL14463 "Regulator of telomere ... 751 2.0e-134 2
UNIPROTKB|B4JNS2 - symbol:GH24089 "Regulator of telomere ... 741 3.2e-134 2
UNIPROTKB|D6RA96 - symbol:RTEL1-TNFRSF6B "Protein RTEL1-T... 744 2.6e-130 2
UNIPROTKB|B4I0K4 - symbol:GM12432 "Regulator of telomere ... 756 4.0e-128 3
TAIR|locus:2030497 - symbol:AT1G20720 species:3702 "Arabi... 933 6.3e-110 2
UNIPROTKB|A8WS58 - symbol:rtel-1 "Regulator of telomere e... 556 2.8e-102 2
WB|WBGene00009124 - symbol:rtel-1 species:6239 "Caenorhab... 542 6.1e-100 2
UNIPROTKB|Q93575 - symbol:rtel-1 "Regulator of telomere e... 542 6.1e-100 2
UNIPROTKB|Q3YK19 - symbol:BRIP1 "Fanconi anemia group J p... 568 2.1e-92 4
UNIPROTKB|A4K436 - symbol:RTEL1 "Regulator of telomere el... 878 3.4e-92 2
UNIPROTKB|E1C1X9 - symbol:BRIP1 "Fanconi anemia group J p... 563 8.1e-92 4
UNIPROTKB|J3QSE8 - symbol:BRIP1 "Fanconi anemia group J p... 569 2.1e-89 3
DICTYBASE|DDB_G0286621 - symbol:fncJ "DEAD/DEAH box helic... 502 4.7e-89 3
ZFIN|ZDB-GENE-081107-11 - symbol:brip1 "BRCA1 interacting... 570 4.9e-89 3
UNIPROTKB|Q5RE34 - symbol:RTEL1 "Regulator of telomere el... 846 7.3e-89 2
UNIPROTKB|Q9NZ71 - symbol:RTEL1 "Regulator of telomere el... 842 1.6e-88 2
UNIPROTKB|Q9BX63 - symbol:BRIP1 "Fanconi anemia group J p... 569 2.1e-88 3
UNIPROTKB|F6WH68 - symbol:RTEL1 "Protein RTEL1-TNFRSF6B" ... 842 1.8e-87 2
UNIPROTKB|J9NVZ8 - symbol:BRIP1 "Uncharacterized protein"... 561 2.6e-87 4
UNIPROTKB|E2RHN5 - symbol:BRIP1 "Uncharacterized protein"... 561 3.4e-87 4
UNIPROTKB|D4ACW5 - symbol:Brip1 "Protein Brip1" species:1... 561 4.6e-87 4
MGI|MGI:2442836 - symbol:Brip1 "BRCA1 interacting protein... 564 6.9e-87 4
UNIPROTKB|E2RLA6 - symbol:RTEL1 "Uncharacterized protein"... 825 2.3e-86 3
UNIPROTKB|D4ACH4 - symbol:Rtel1 "Regulator of telomere el... 820 5.4e-86 2
MGI|MGI:2139369 - symbol:Rtel1 "regulator of telomere elo... 819 3.4e-85 2
RGD|1306721 - symbol:Rtel1 "regulator of telomere elongat... 820 3.9e-85 2
UNIPROTKB|Q6H1L8 - symbol:Rtel1 "Regulator of telomere el... 805 1.1e-83 2
UNIPROTKB|F1MMS0 - symbol:BRIP1 "Uncharacterized protein"... 564 2.9e-77 3
UNIPROTKB|E1BNG9 - symbol:BRIP1 "Uncharacterized protein"... 564 3.1e-76 3
RGD|1307659 - symbol:Brip1 "BRCA1 interacting protein C-t... 551 4.8e-73 4
WB|WBGene00001049 - symbol:dog-1 species:6239 "Caenorhabd... 469 5.1e-69 3
UNIPROTKB|F1MWN6 - symbol:RTEL1 "Regulator of telomere el... 701 6.0e-69 1
UNIPROTKB|G3N0I3 - symbol:BRIP1 "Uncharacterized protein"... 564 1.8e-67 3
POMBASE|SPAC3G6.11 - symbol:chl1 "ATP-dependent DNA helic... 612 3.4e-67 2
ZFIN|ZDB-GENE-041114-191 - symbol:ddx11 "DEAD/H (Asp-Glu-... 402 1.4e-57 4
UNIPROTKB|I3LBL1 - symbol:BRIP1 "Uncharacterized protein"... 274 3.1e-54 3
CGD|CAL0004313 - symbol:orf19.2000 species:5476 "Candida ... 356 1.5e-53 3
FB|FBgn0026876 - symbol:CG11403 species:7227 "Drosophila ... 361 2.2e-52 3
MGI|MGI:2443590 - symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/H... 369 1.9e-51 4
UNIPROTKB|Q91941 - symbol:ERCC2/XPD "ERCC2/XPD protein" s... 366 2.0e-49 2
UNIPROTKB|P18074 - symbol:ERCC2 "TFIIH basal transcriptio... 353 5.7e-48 2
ASPGD|ASPL0000038959 - symbol:AN10414 species:162425 "Eme... 426 5.9e-48 3
ZFIN|ZDB-GENE-040426-997 - symbol:ercc2 "excision repair ... 475 1.1e-47 2
UNIPROTKB|F1N2P3 - symbol:ERCC2 "TFIIH basal transcriptio... 354 5.0e-47 2
UNIPROTKB|A6QLJ0 - symbol:ERCC2 "TFIIH basal transcriptio... 354 5.0e-47 2
UNIPROTKB|A8MPP1 - symbol:DDX11L8 "Putative ATP-dependent... 322 7.6e-47 4
UNIPROTKB|Q60452 - symbol:ERCC2 "TFIIH basal transcriptio... 354 1.3e-46 2
MGI|MGI:95413 - symbol:Ercc2 "excision repair cross-compl... 355 2.1e-46 2
RGD|1309109 - symbol:Ercc2 "excision repair cross-complem... 352 2.8e-46 2
TAIR|locus:2017894 - symbol:AT1G79890 species:3702 "Arabi... 393 6.7e-46 3
UNIPROTKB|E2RGR5 - symbol:DDX11 "Uncharacterized protein"... 374 1.9e-45 3
UNIPROTKB|A8MX75 - symbol:ERCC2 "TFIIH basal transcriptio... 353 2.6e-45 2
UNIPROTKB|Q92771 - symbol:DDX12P "Putative ATP-dependent ... 335 2.9e-45 4
UNIPROTKB|F1PMH9 - symbol:ERCC2 "Uncharacterized protein"... 342 6.3e-45 2
UNIPROTKB|E1BL06 - symbol:E1BL06 "Uncharacterized protein... 310 3.1e-44 4
RGD|1306675 - symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) ... 364 1.4e-43 3
TAIR|locus:2014525 - symbol:UVH6 "ULTRAVIOLET HYPERSENSIT... 335 1.5e-43 2
UNIPROTKB|E7EVE9 - symbol:ERCC2 "TFIIH basal transcriptio... 353 2.0e-43 4
UNIPROTKB|F1SK84 - symbol:DDX11 "Uncharacterized protein"... 347 1.2e-42 3
UNIPROTKB|F1NN99 - symbol:DDX11 "Uncharacterized protein"... 373 2.6e-42 3
WB|WBGene00010839 - symbol:chl-1 species:6239 "Caenorhabd... 247 9.9e-41 3
CGD|CAL0002854 - symbol:RAD3 species:5476 "Candida albica... 294 4.2e-40 3
UNIPROTKB|Q5AFE9 - symbol:RAD3 "Putative uncharacterized ... 294 4.2e-40 3
SGD|S000000973 - symbol:RAD3 "5' to 3' DNA helicase" spec... 281 1.2e-39 3
UNIPROTKB|Q96FC9 - symbol:DDX11 "Probable ATP-dependent R... 242 1.8e-38 4
WB|WBGene00021752 - symbol:Y50D7A.2 species:6239 "Caenorh... 340 6.7e-38 2
ASPGD|ASPL0000055138 - symbol:AN9436 species:162425 "Emer... 283 2.0e-37 2
UNIPROTKB|J9NWT1 - symbol:ERCC2 "Uncharacterized protein"... 268 6.5e-37 2
POMBASE|SPAC1D4.12 - symbol:rad15 "transcription factor T... 287 4.0e-36 2
FB|FBgn0261850 - symbol:Xpd "Xeroderma pigmentosum D" spe... 263 1.1e-35 2
DICTYBASE|DDB_G0267414 - symbol:repD "transcription facto... 251 4.7e-34 2
SGD|S000005929 - symbol:CHL1 "Probable DNA helicase" spec... 281 6.9e-29 2
GENEDB_PFALCIPARUM|MAL13P1.134 - symbol:MAL13P1.134 "heli... 219 1.7e-25 5
UNIPROTKB|Q8IE72 - symbol:MAL13P1.134 "DEAD box helicase,... 219 1.7e-25 5
UNIPROTKB|F1N0S0 - symbol:RTEL1 "Regulator of telomere el... 271 1.5e-19 3
UNIPROTKB|H0YFY8 - symbol:DDX11 "Probable ATP-dependent R... 230 6.5e-18 1
UNIPROTKB|K7EIT8 - symbol:ERCC2 "TFIIH basal transcriptio... 207 2.0e-14 1
UNIPROTKB|J3QKX0 - symbol:BRIP1 "Fanconi anemia group J p... 186 3.2e-13 1
UNIPROTKB|J3KS24 - symbol:BRIP1 "Fanconi anemia group J p... 169 2.1e-11 1
UNIPROTKB|F5H235 - symbol:DDX11 "Probable ATP-dependent R... 116 1.0e-10 2
UNIPROTKB|C9K0E8 - symbol:DDX11 "Probable ATP-dependent R... 116 1.1e-10 2
UNIPROTKB|Q880W4 - symbol:PSPTO_3036 "Uncharacterized pro... 116 1.7e-08 3
UNIPROTKB|B4E0F6 - symbol:ERCC2 "TFIIH basal transcriptio... 100 2.2e-08 2
UNIPROTKB|Q4JC68 - symbol:Saci_0192 "ATP-dependent DNA he... 101 2.2e-08 4
WARNING: Descriptions of 11 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2016209 [details] [associations]
symbol:AT1G79950 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR003822 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 EMBL:CP002684
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
TIGRFAMs:TIGR00604 Gene3D:1.20.1160.11 SUPFAM:SSF47762 KO:K11136
OMA:PFPPLKD IPI:IPI00530732 RefSeq:NP_178113.3 UniGene:At.34013
ProteinModelPortal:F4HQE2 SMR:F4HQE2 PRIDE:F4HQE2
EnsemblPlants:AT1G79950.1 GeneID:844335 KEGG:ath:AT1G79950
ArrayExpress:F4HQE2 Uniprot:F4HQE2
Length = 1040
Score = 2569 (909.4 bits), Expect = 4.0e-285, Sum P(2) = 4.0e-285
Identities = 492/802 (61%), Positives = 616/802 (76%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP Y IRGI+VEFPFEAY Q++YM++VI+SLQNKC+ALLESPTGTGKTLCLLCATLAWR
Sbjct: 46 MPNYSIRGINVEFPFEAYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAWR 105
Query: 61 KSLGSFSTLXXXXXXX---XXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKTS 117
KSLGSFST PTI+Y SRTHSQLRQVI+ELK S
Sbjct: 106 KSLGSFSTRKDRKNSAIPWSDSDEPLSQSGGGGGGAFPTIVYASRTHSQLRQVIKELKRS 165
Query: 118 NYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPH 177
+YRPKMV+LGSREQLC++ EV+ LRG A NAC++LCKK R+CNH +R+ DY+K+NPH
Sbjct: 166 SYRPKMVVLGSREQLCVNEEVNSLRGKALTNACQYLCKKRGKRQCNHFNRLPDYLKHNPH 225
Query: 178 LGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSI 237
+GDEP+DIEDLVNIG+ GPCPY++TREL K VDI+FAPYNYLI +RK L V W NS+
Sbjct: 226 IGDEPVDIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPYNYLISNGYRKFLKVNWTNSV 285
Query: 238 LIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAIL 297
LIFDEAHNLE +CAD+ASFDL S LL+ACISEA+ C+ +++ RR +D ++NP+NFAIL
Sbjct: 286 LIFDEAHNLESLCADSASFDLPSVLLSACISEAQECVQLAAARRDSLNDVSINPENFAIL 345
Query: 298 RALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQE 357
+ LLLKL++ I++VPI ++ GFTKPGPYIYE+L LNIT ETA KLI VE AA L+E
Sbjct: 346 KGLLLKLQELISKVPIPKRDEGFTKPGPYIYEMLKSLNITHETAPKLIGTVEEAAVFLEE 405
Query: 358 DKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLS 417
+K Q + ++E I+++LK+IFR+ G+ H+ YRVHV+E + N+ DV+KGK SRTLS
Sbjct: 406 EK-QRTATNAGSKLEIIADMLKLIFRENGSNHADVYRVHVQELEQNSTDVMKGKVSRTLS 464
Query: 418 WWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAG 477
WWCF+PGI M + ++ VGSIILTSGTLSPMDS AQELKL+FP+R+ENPHVI+S Q+WAG
Sbjct: 465 WWCFSPGITMLDIAQKGVGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAG 524
Query: 478 IVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWK 537
+V GPSGY+LNSSYRNRD EYKQELGN IVN +R+VP+GLLIFFPSYYLMD CI WK
Sbjct: 525 VVSTGPSGYVLNSSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWK 584
Query: 538 NTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVS 597
N + N T+WERICK KKPV+EP+ SSLFP A+ D+ KL+D +TSG VFFAVCRGKVS
Sbjct: 585 NGCYRNSMTVWERICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVS 644
Query: 598 EGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWY 657
EGLDFAD AGRAVVITG+P+A +TDP+V+LKRE+LD QSQ + K + + LSG WY
Sbjct: 645 EGLDFADGAGRAVVITGLPYARVTDPRVKLKREFLD--EQSQLADVKLPRSTLLSGSMWY 702
Query: 658 NQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVY 717
+Q+A+RAVNQA+GRVIRHRHDYGAIIFCD+RF PS++S+ISLWI+P+++CYS++G+V+
Sbjct: 703 SQEAARAVNQAIGRVIRHRHDYGAIIFCDDRFEQPSQQSKISLWIRPNVKCYSRYGEVIS 762
Query: 718 TLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQACYSLH 777
L RFFR ER + +L+ + + V L PV+ S+E+ P TPA + +L
Sbjct: 763 DLARFFRTER--SNFPARLVTEQENNIVSTLLPVE-----SIEDNP--TPAFGNS--NLK 811
Query: 778 EVK-NRNTSSHSGEIVPANRSS 798
V +N S PANR+S
Sbjct: 812 NVGVAQNELSRLEAFPPANRAS 833
Score = 194 (73.4 bits), Expect = 4.0e-285, Sum P(2) = 4.0e-285
Identities = 56/183 (30%), Positives = 90/183 (49%)
Query: 851 PR--KEELIAPCSTKKRKVLISESDQMQCVKKISEIASDAESSQPSSFIPITNKVKHEKP 908
PR K +++ CS++K K++ D+ V++ E+ D ES + +T
Sbjct: 857 PRIVKGDVMQGCSSRKAKLVELSDDEETPVERRCEVV-DLESDNCETQTCVT-------- 907
Query: 909 QISDSGSRIIAQG-SAPSKVDGTTYRIEAEIQSEKSKGSHSSAPPCGGEETKGSAFLIQV 967
++ S + + G KV + + + + K G +E SAFL QV
Sbjct: 908 EVLASSTCLNTMGLKKKRKVPESQGSASSSVLTAKGNGGGDK------KEASASAFLSQV 961
Query: 968 QEKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLFAGPERLPLLRRFKDYVPAKYHPL 1027
+EKL+ EYK+F+G+ +++V+QSI +LF G ER LL FKD+VP KY P
Sbjct: 962 KEKLNTEEYKKFIGYMQALKKKEIKLANVMQSIVQLFCGSERDHLLMGFKDFVPVKYRPA 1021
Query: 1028 YEQ 1030
YE+
Sbjct: 1022 YEE 1024
>UNIPROTKB|Q16X92 [details] [associations]
symbol:AAEL008960 "Regulator of telomere elongation
helicase 1 homolog" species:7159 "Aedes aegypti" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH477545 RefSeq:XP_001653621.1 UniGene:Aae.7622
ProteinModelPortal:Q16X92 PRIDE:Q16X92 EnsemblMetazoa:AAEL008960-RA
GeneID:5571306 KEGG:aag:AaeL_AAEL008960 VectorBase:AAEL008960
HOGENOM:HOG000007558 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
PhylomeDB:Q16X92 Uniprot:Q16X92
Length = 1010
Score = 744 (267.0 bits), Expect = 4.9e-144, Sum P(3) = 4.9e-144
Identities = 157/348 (45%), Positives = 216/348 (62%)
Query: 394 RVHVREADANAAD---VLKGKAS-RTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMD 449
R +V++AD A V KA+ + +S+WCFNPG M++ SIILTSGTL+P+
Sbjct: 436 RGNVKQADGWTATKQLVPSVKANAKVVSFWCFNPGFGMRQLLGRNARSIILTSGTLAPLK 495
Query: 450 SFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIV 509
EL + +R+ENPH+I Q+ IV GP LNSSY NRD+ +Y LG TI+
Sbjct: 496 PLISELDIPIAVRLENPHIIDGSQVCVKIVGQGPDKESLNSSYGNRDNPKYISSLGRTIL 555
Query: 510 NIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPL 569
+ I+P GLL+FFPSY L+++C W+ T IW +I + K VEPR F
Sbjct: 556 SFCPIIPGGLLVFFPSYPLLNKCQEAWQETG------IWAQISRTKPIFVEPRGKDQFLN 609
Query: 570 AIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKR 629
+ +Y K+ D GAVF AVCRGKVSEGLDFAD GRAV+ITG+PF + D +V LK+
Sbjct: 610 TMSEYYQKINDPDGKGAVFMAVCRGKVSEGLDFADMNGRAVIITGLPFPPLKDARVILKK 669
Query: 630 EYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF 689
+YL E + + +SG++WY+ +A+RAVNQA+GRVIRH++DYGAI+ CD RF
Sbjct: 670 KYLQ--------EVRTRENEIISGDEWYSLEAARAVNQAIGRVIRHKNDYGAILLCDNRF 721
Query: 690 AHPSRKSQISLWIQPHIQC--YSKFGDVVYTLTRFFRE-ERICGSTNL 734
+ +KSQ+S WIQ H+ + FG ++ L+RFFR E+I + L
Sbjct: 722 HNHRQKSQLSSWIQKHLNTNQHQNFGPIIGELSRFFRNAEKILPQSKL 769
Score = 498 (180.4 bits), Expect = 4.9e-144, Sum P(3) = 4.9e-144
Identities = 116/315 (36%), Positives = 178/315 (56%)
Query: 94 LPTILYTSRTHSQLRQVIQELKTSNYR-PKMVILGSREQLCIHREVSLLRG-SAQNNACR 151
+P I+Y SRTHSQL QV+QE+K ++Y K VILGSR+QLCIH EVS G S + N C+
Sbjct: 117 VPKIVYASRTHSQLTQVMQEMKNTSYSFMKGVILGSRDQLCIHPEVSKEEGNSTKTNLCK 176
Query: 152 FLCKKGTNRRCNHHSRVADYMKNNPHLGDEPI-DIEDLVNIGRTFGPCPYFMTRELQKTV 210
K +R C+ +SRV + K P + I DIEDLV +G CP+F+++EL ++
Sbjct: 177 ---AKVQSRTCSFYSRV-ESCKERPEVVSNVIMDIEDLVKVGTKVRACPFFLSKELIESA 232
Query: 211 DIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEA 270
DI+F PYNYL+DP RK +E N+I+I DEAHN+E +C ++AS + S + CI +
Sbjct: 233 DILFMPYNYLLDPKARKANNLEISNTIIILDEAHNVEKMCEESASMQIRSTDIALCIDDV 292
Query: 271 KNCIDISSTRRG-QSSDETLNP---DNFAILRALLLKLEKRIAEVPINSKELGFTKPGPY 326
+ + + DET D+ A+L+ +LL+LEK + +P+ + G T PG Y
Sbjct: 293 TSIMKVMDHSVAIPEDDETKKDFTIDDLALLKEMLLQLEKTVDSIPVMFSQGGNTFPGTY 352
Query: 327 IYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKG 386
I+E+ NI + + + ++E + + +N ++ ++ L IIF G
Sbjct: 353 IFEIFEKANIKEGNYHIIAQLLENIIQYIATITEKNNFVRRGGGLQILAEALSIIFAGSG 412
Query: 387 TAHSAY----YRVHV 397
+ A Y+VH+
Sbjct: 413 PEYRASIDKCYKVHI 427
Score = 202 (76.2 bits), Expect = 4.9e-144, Sum P(3) = 4.9e-144
Identities = 38/59 (64%), Positives = 44/59 (74%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
MP Y+I GI V FPFE Y Q YM +VI+ LQN N +LESPTGTGKTL LLC++LAW
Sbjct: 1 MPEYQINGITVNFPFEPYQVQRDYMSRVIECLQNSTNGVLESPTGTGKTLSLLCSSLAW 59
Score = 60 (26.2 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 32/133 (24%), Positives = 60/133 (45%)
Query: 763 PSSTPAVDQACYSLH-EVKNRNTSSHSGEIVPANRSSLSPYKGIWASELKNSSDLIQFEK 821
P ++D+ CY +H E++ + + G + A+ + + K + S +K ++ ++ F
Sbjct: 413 PEYRASIDK-CYKVHIEIEEQKKTR--GNVKQADGWTAT--KQLVPS-VKANAKVVSFWC 466
Query: 822 KLLLSGRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQCVKKI 881
G + + R+ I LTS + KP EL P + + I + Q+ CVK +
Sbjct: 467 FNPGFGMRQLLGRNARSIILTSGTLAPLKPLISELDIPIAVRLENPHIIDGSQV-CVKIV 525
Query: 882 SEIASDAESSQPS 894
+ D ES S
Sbjct: 526 GQ-GPDKESLNSS 537
>UNIPROTKB|E1BTS7 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AADN02019151 EMBL:AADN02019152
EMBL:AADN02019153 IPI:IPI00819960 Ensembl:ENSGALT00000039433
ArrayExpress:E1BTS7 Uniprot:E1BTS7
Length = 1085
Score = 787 (282.1 bits), Expect = 2.1e-141, Sum P(2) = 2.1e-141
Identities = 158/345 (45%), Positives = 217/345 (62%)
Query: 390 SAYYRVHVREADANA------ADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSII 439
S YY+VH+ ++N D+ A++ TLS+WCF+PG +M E R V +II
Sbjct: 419 SRYYKVHIHLDNSNQKKKKERTDLWDSSAAKKQGKTLSYWCFSPGYSMHELVRQGVRTII 478
Query: 440 LTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIE 499
LTSGTLSP+ SF E+++ FP+ +ENPHVI +Q+W GI+P GP G +LNS+Y R S +
Sbjct: 479 LTSGTLSPLSSFTMEMQIPFPVLLENPHVIDKRQLWVGIIPKGPDGTVLNSAYERRFSED 538
Query: 500 YKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVV 559
Y LG TI N+ R+VP GLL+FFPSY +MD+ + W+ +RI + K V
Sbjct: 539 YLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLEYWREHDFA------KRIEEVKPMFV 592
Query: 560 EPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFAT 619
EPR F ++ Y +K+ ++GA F AVCRGK SEGLDFAD GR V+ITG+PF
Sbjct: 593 EPRNKGSFAEVMDAYYSKIACPKSNGAAFLAVCRGKASEGLDFADMNGRGVIITGLPFPP 652
Query: 620 MTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDY 679
+P+V LK ++L+ +S G LSG WYNQQASRAVNQA+GRVIRHR DY
Sbjct: 653 RWEPRVVLKMQFLNEMKKSNMGA------QCLSGHQWYNQQASRAVNQAIGRVIRHRQDY 706
Query: 680 GAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
GAI CD+RF + + ++ W++P++ Y FG V +++ FFR
Sbjct: 707 GAIFLCDDRFTTDNVRGKLPSWVRPYVNVYDNFGHAVRSVSVFFR 751
Score = 617 (222.3 bits), Expect = 2.1e-141, Sum P(2) = 2.1e-141
Identities = 149/408 (36%), Positives = 224/408 (54%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP +RG+ V+FPF+ Y+CQ YM KV++ LQ K N +LESPTGTGKTLCLLC+TLAWR
Sbjct: 1 MPRVTLRGVTVDFPFQPYECQETYMAKVLECLQTKVNGILESPTGTGKTLCLLCSTLAWR 60
Query: 61 KSL-GSFST-----------LXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLR 108
+ + S L +P I+Y SRTHSQL
Sbjct: 61 EHFKDTISARKIAQRMNGVELFPDRPMSSWGNAATDGDIPTYYTDIPKIIYASRTHSQLT 120
Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLC-KKGTNRRCNHHSR 167
QVI ELK + YRPK+ +LGSREQLCI+ EV + N+ ++C KK R C+ ++
Sbjct: 121 QVINELKNTVYRPKICVLGSREQLCINPEV---KRQESNHMQIYMCRKKVMARACHFYNN 177
Query: 168 VADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRK 227
V + L D +DIEDLV G CPY+++R L++ DI+F PYNYL+D R+
Sbjct: 178 VEE-KSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLDAKSRR 236
Query: 228 GLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACIS-------EAKNCI---DIS 277
+E K +++I DEAHN+E +C +++SFDL++ L + I E + +++
Sbjct: 237 AHNIELKGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEEQAKVVQQNEVN 296
Query: 278 STRRGQS-SDETLNPD--NFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADL 334
+ +S S LN + + A ++ +LL+LE I V + + G TK G YI+EL A
Sbjct: 297 AEFNMESISSAGLNMELEDIAKIKKILLQLESAIDAVELPPNDSGVTKDGSYIFELFAQA 356
Query: 335 NITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
IT +T L++ ++ ++LQ + + +S+I++ +F
Sbjct: 357 QITFQTKTSLLESLD---QILQFLSGRTGIFINTSGLHKLSDIIQTVF 401
>UNIPROTKB|B0W9F4 [details] [associations]
symbol:CPIJ003765 "Regulator of telomere elongation
helicase 1 homolog" species:7176 "Culex quinquefasciatus"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000007558 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
EMBL:DS231864 RefSeq:XP_001845338.1 ProteinModelPortal:B0W9F4
EnsemblMetazoa:CPIJ003765-RA GeneID:6035102
KEGG:cqu:CpipJ_CPIJ003765 VectorBase:CPIJ003765 PhylomeDB:B0W9F4
Uniprot:B0W9F4
Length = 978
Score = 734 (263.4 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 171/437 (39%), Positives = 245/437 (56%)
Query: 394 RVHVREADANAAD---VLKGKAS-RTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMD 449
R + ++AD A V KA+ + +++WCFNPG M++ SIILTSGTL+P+
Sbjct: 438 RGNTKQADGWTATKQLVPSVKANAKVINFWCFNPGFGMRQLLGRNARSIILTSGTLAPLK 497
Query: 450 SFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIV 509
EL + +++ENPH+I Q+ IV GP LNSSY NRD+ +Y LG TI+
Sbjct: 498 PLISELDIPIAVKLENPHIIDGSQVCVKIVGQGPDKESLNSSYGNRDNPKYISSLGRTIL 557
Query: 510 NIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPL 569
+ I+P GLL+FFPSY L+++C W+ T IW +I + K VEPR F
Sbjct: 558 SFCPIIPGGLLVFFPSYPLLNKCQEAWQETG------IWAQISRTKPIFVEPRGKDQFLN 611
Query: 570 AIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKR 629
+ +Y AK+ D GAVF AVCRGKVSEGLDFAD GRA +ITG+PF + D +V LK+
Sbjct: 612 TMTEYYAKINDPDGKGAVFMAVCRGKVSEGLDFADMNGRACIITGLPFPPLKDARVILKK 671
Query: 630 EYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF 689
YL E + + +SG++WY+ +A+RAVNQA+GRVIRH++DYGAI+ CD RF
Sbjct: 672 RYLQ--------EVRTRENEIISGDEWYSLEAARAVNQAIGRVIRHKNDYGAILLCDNRF 723
Query: 690 AHPSRKSQISLWIQPHIQC--YSKFGDVVYTLTRFFRE-ERICGSTNLKLIKTEVSGDVR 746
+P +K+Q+S WIQ H+ + FG +V L++FFR E+ L T +
Sbjct: 724 HNPRQKAQLSSWIQKHLNTAQHPTFGPIVRELSQFFRNAEKTLPQAKL----TRSLAPLG 779
Query: 747 ELKPVDLL-DKISLEEVPSSTPAVDQACYSLHEVKNRN--TSSHSGEIVPANRSSLSPYK 803
P+ L+ D SL + +D + +++N N T+ + A+RS +
Sbjct: 780 PEPPIALVPDSTSLLVSGETKKKLDDIKNNFIKIENSNAVTAFKLSDYQHAHRSDATAAS 839
Query: 804 GI-WASELKNSSDLIQF 819
G + S L I F
Sbjct: 840 GKDFLSRLNTQVRTIDF 856
Score = 485 (175.8 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 110/336 (32%), Positives = 180/336 (53%)
Query: 94 LPTILYTSRTHSQLRQVIQELKTSNYR-PKMVILGSREQLCIHREVSLLRGSA-QNNACR 151
+P I+Y SRTHSQL Q +QE+K ++Y + VILGSR+QLCIH EV+ G+A + N C+
Sbjct: 119 VPKIIYASRTHSQLTQAMQEMKNTSYGFMRAVILGSRDQLCIHPEVAKEEGNAVKTNLCK 178
Query: 152 FLCKKGTNRRCNHHSRVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTV 210
K R C+ +SRV + K P + G +DIEDLV + CP+FM++EL +
Sbjct: 179 ---AKIQARACSFYSRV-EACKERPEITGSTIMDIEDLVRVSTKLKACPFFMSKELIENA 234
Query: 211 DIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEA 270
D++F PYNYL+DP RK +E N+I+I DEAHN++ +C ++AS + S + CI +
Sbjct: 235 DVLFMPYNYLLDPKARKANNLELANTIIILDEAHNVDKMCEESASMQIRSSDIALCIDDV 294
Query: 271 KNCIDISSTRRGQSSDETLNPD----NFAILRALLLKLEKRIAEVPINSKELGFTKPGPY 326
+ + + D+ D + A+L+ +LL LEK + E+P+ + G T+PG Y
Sbjct: 295 TSIMKVMDNTVAIPEDDDAKKDFTIDDLALLKEMLLSLEKTVDEIPVMFSQGGSTQPGTY 354
Query: 327 IYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKG 386
I+E+ NI + + + ++E + + +N ++ ++ L I+F G
Sbjct: 355 IFEIFEKANIKEGNYHIIAQLLENIIQYIATITEKNNFVRRGGGLQILAESLSIMFAGSG 414
Query: 387 TAH----SAYYRVHVREADANAADVLKGKASRTLSW 418
+ Y+ H+ D ++G + W
Sbjct: 415 PQYRESIDKCYKCHI---DIEEQKKVRGNTKQADGW 447
Score = 482 (174.7 bits), Expect = 3.6e-104, Sum P(3) = 3.6e-104
Identities = 128/367 (34%), Positives = 185/367 (50%)
Query: 545 TTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFAD 604
T IW +I + K VEPR F + +Y AK+ D GAVF AVCRGKVSEGLDFAD
Sbjct: 587 TGIWAQISRTKPIFVEPRGKDQFLNTMTEYYAKINDPDGKGAVFMAVCRGKVSEGLDFAD 646
Query: 605 HAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRA 664
GRA +ITG+PF + D +V LK+ YL E + + +SG++WY+ +A+RA
Sbjct: 647 MNGRACIITGLPFPPLKDARVILKKRYLQ--------EVRTRENEIISGDEWYSLEAARA 698
Query: 665 VNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQC--YSKFGDVVYTLTRF 722
VNQA+GRVIRH++DYGAI+ CD RF +P +K+Q+S WIQ H+ + FG +V L++F
Sbjct: 699 VNQAIGRVIRHKNDYGAILLCDNRFHNPRQKAQLSSWIQKHLNTAQHPTFGPIVRELSQF 758
Query: 723 FREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAV--DQACYSLHEVK 780
FR L K R L P+ I+L VP ST + + L ++K
Sbjct: 759 FRN----AEKTLPQAKL-----TRSLAPLGPEPPIAL--VPDSTSLLVSGETKKKLDDIK 807
Query: 781 NRNTSSHSGEIVPANRSSLSPYKGIWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFID 840
N + V A + LS Y+ S+ +S F +L R +I + D
Sbjct: 808 NNFIKIENSNAVTAFK--LSDYQHAHRSDATAASGK-DFLSRLNTQVR-TIDFNDMSSAG 863
Query: 841 LTSNSSL---HAKPRKEELIAPCSTKKRKVLISESDQMQCVKKISEIASDAESSQPSSFI 897
+S + L H + R E KKRKV++ + + + + E P +
Sbjct: 864 PSSQAGLVAIHKRERSNESTMVTQQKKRKVVLIPQETISLDDSLEVLEVKPERQAPEDRV 923
Query: 898 PITNKVK 904
+ +K
Sbjct: 924 ELLKVIK 930
Score = 198 (74.8 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 38/59 (64%), Positives = 43/59 (72%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
MP Y I GI V FPFE Y Q YM +VI+ LQN N +LESPTGTGKTL LLC++LAW
Sbjct: 1 MPEYLINGIPVNFPFEPYQVQRDYMARVIECLQNSSNGVLESPTGTGKTLSLLCSSLAW 59
Score = 58 (25.5 bits), Expect = 1.1e-59, Sum P(3) = 1.1e-59
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 827 GRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQCVKKISEIAS 886
G + + R+ I LTS + KP EL P + K I + Q+ CVK + +
Sbjct: 474 GMRQLLGRNARSIILTSGTLAPLKPLISELDIPIAVKLENPHIIDGSQV-CVKIVGQ-GP 531
Query: 887 DAESSQPS 894
D ES S
Sbjct: 532 DKESLNSS 539
Score = 38 (18.4 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 615 MPFATMTDPKVRLKREYLDL 634
MP+ + DPK R K L+L
Sbjct: 239 MPYNYLLDPKAR-KANNLEL 257
>ZFIN|ZDB-GENE-050306-11 [details] [associations]
symbol:rtel1 "regulator of telomere elongation
helicase 1" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-050306-11 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 KO:K11136 CTD:51750 EMBL:BX004876
IPI:IPI01016862 RefSeq:NP_001013328.2 UniGene:Dr.87074
ProteinModelPortal:F1QNW3 Ensembl:ENSDART00000123445 GeneID:503732
KEGG:dre:503732 NextBio:20866277 Bgee:F1QNW3 Uniprot:F1QNW3
Length = 1177
Score = 834 (298.6 bits), Expect = 5.1e-141, Sum P(2) = 5.1e-141
Identities = 185/476 (38%), Positives = 276/476 (57%)
Query: 267 ISEAKNCID--ISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPG 324
IS+A + D + S G D T A ++ +L+ LE I + + + G TKPG
Sbjct: 290 ISKADSAEDFNVESLNSGLKMDIT----TIAKVKQILMDLETAINDFEMPANNQGITKPG 345
Query: 325 PYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRD 384
+I+EL N+ +T + ++ +E L ++ ++ I ++ +
Sbjct: 346 SFIFELFEMANVNSKTKTETVEAMEQITGYLAGRPGVFLNTSGLQKVADIIQLVFVAEPA 405
Query: 385 KGTAHSAY------YRVHVREADAN-----AADVLKGKASR----TLSWWCFNPGIAMQE 429
+G+ S ++VH+ ++N DV +++ LS+WCF+PG +MQE
Sbjct: 406 EGSKKSQTGNSLKEFKVHIHPDNSNFKKKQITDVWASSSTKKQGNVLSYWCFSPGFSMQE 465
Query: 430 FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLN 489
R EV IILTSGTLSP+ SF E+++ FP+ +ENPHVI QI+ I+ GP G L+
Sbjct: 466 LLRQEVRCIILTSGTLSPLSSFTCEMQIPFPVSLENPHVIQRDQIFVSIIEKGPDGVQLS 525
Query: 490 SSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWE 549
+++ R E +GNT+VN++R+VP GLL+FFPSY +MD+ + W+ H +
Sbjct: 526 TAFDRRFVPENMSSMGNTLVNLSRVVPHGLLVFFPSYPVMDKTLEFWRAKGHA------D 579
Query: 550 RICKHKKPV-VEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGR 608
RI ++ KP+ VEPR F I+ Y K+ D ++SG FFAVCRGK SEGLDFAD GR
Sbjct: 580 RI-ENVKPMFVEPRGKGTFTEVIDGYYGKVDDPNSSGGSFFAVCRGKASEGLDFADTYGR 638
Query: 609 AVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQA 668
VVITG+PF DP+V LK +YLD ++ K + + +L+G++WY QQASRAVNQA
Sbjct: 639 GVVITGLPFPPRMDPRVVLKMQYLDEMCRN-----KISGVKYLTGQEWYRQQASRAVNQA 693
Query: 669 VGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
+GRVIRHR DYGAI CD RF ++Q+ W++P+++ Y FG +V + +FFR
Sbjct: 694 IGRVIRHREDYGAIFLCDHRFKSADARNQLPSWVRPYVKIYDGFGTMVRDVAQFFR 749
Score = 569 (205.4 bits), Expect = 5.1e-141, Sum P(2) = 5.1e-141
Identities = 125/300 (41%), Positives = 180/300 (60%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP K++GI+V+FPF Y CQ YM KVI+ LQ K N +LESPTGTGKTLCLLC+TLAWR
Sbjct: 1 MPVIKLKGINVDFPFTPYPCQEDYMSKVIECLQKKVNGVLESPTGTGKTLCLLCSTLAWR 60
Query: 61 -------------KSLGSFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQL 107
+ +G + L +P I+Y SRTHSQL
Sbjct: 61 DHFKDTISARKITERMGG-AELFADRPMSSWGTAATDGDTPTYYTDIPKIIYASRTHSQL 119
Query: 108 RQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCK-KGTNRRCNHHS 166
QV+ ELK ++YRPK+ +LGSREQLCI++EV +R + N+ +C+ K ++R C ++
Sbjct: 120 TQVVNELKNTSYRPKICVLGSREQLCINQEV--MRHES-NHIKVHMCRAKVSSRSCIFYN 176
Query: 167 RVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFR 226
V D + + + +D+EDLV G+ CPY+++R L++ D++F PYNYL+DP R
Sbjct: 177 NV-DEKSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQHADVIFMPYNYLLDPKSR 235
Query: 227 KGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSD 286
+ +E K +++IFDEAHN+E +C ++ SFDL+ L + I EA + R Q+SD
Sbjct: 236 RAHNIELKGAVVIFDEAHNVEKMCEESTSFDLTPHDLISAI-EA-----VDRLLREQASD 289
>UNIPROTKB|E1BTS6 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AADN02019151 EMBL:AADN02019152
EMBL:AADN02019153 IPI:IPI00822587 Ensembl:ENSGALT00000039434
ArrayExpress:E1BTS6 Uniprot:E1BTS6
Length = 1124
Score = 787 (282.1 bits), Expect = 6.1e-141, Sum P(2) = 6.1e-141
Identities = 158/345 (45%), Positives = 217/345 (62%)
Query: 390 SAYYRVHVREADANA------ADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSII 439
S YY+VH+ ++N D+ A++ TLS+WCF+PG +M E R V +II
Sbjct: 419 SRYYKVHIHLDNSNQKKKKERTDLWDSSAAKKQGKTLSYWCFSPGYSMHELVRQGVRTII 478
Query: 440 LTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIE 499
LTSGTLSP+ SF E+++ FP+ +ENPHVI +Q+W GI+P GP G +LNS+Y R S +
Sbjct: 479 LTSGTLSPLSSFTMEMQIPFPVLLENPHVIDKRQLWVGIIPKGPDGTVLNSAYERRFSED 538
Query: 500 YKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVV 559
Y LG TI N+ R+VP GLL+FFPSY +MD+ + W+ +RI + K V
Sbjct: 539 YLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLEYWREHDFA------KRIEEVKPMFV 592
Query: 560 EPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFAT 619
EPR F ++ Y +K+ ++GA F AVCRGK SEGLDFAD GR V+ITG+PF
Sbjct: 593 EPRNKGSFAEVMDAYYSKIACPKSNGAAFLAVCRGKASEGLDFADMNGRGVIITGLPFPP 652
Query: 620 MTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDY 679
+P+V LK ++L+ +S G LSG WYNQQASRAVNQA+GRVIRHR DY
Sbjct: 653 RWEPRVVLKMQFLNEMKKSNMGA------QCLSGHQWYNQQASRAVNQAIGRVIRHRQDY 706
Query: 680 GAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
GAI CD+RF + + ++ W++P++ Y FG V +++ FFR
Sbjct: 707 GAIFLCDDRFTTDNVRGKLPSWVRPYVNVYDNFGHAVRSVSVFFR 751
Score = 617 (222.3 bits), Expect = 6.1e-141, Sum P(2) = 6.1e-141
Identities = 149/408 (36%), Positives = 224/408 (54%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP +RG+ V+FPF+ Y+CQ YM KV++ LQ K N +LESPTGTGKTLCLLC+TLAWR
Sbjct: 1 MPRVTLRGVTVDFPFQPYECQETYMAKVLECLQTKVNGILESPTGTGKTLCLLCSTLAWR 60
Query: 61 KSL-GSFST-----------LXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLR 108
+ + S L +P I+Y SRTHSQL
Sbjct: 61 EHFKDTISARKIAQRMNGVELFPDRPMSSWGNAATDGDIPTYYTDIPKIIYASRTHSQLT 120
Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLC-KKGTNRRCNHHSR 167
QVI ELK + YRPK+ +LGSREQLCI+ EV + N+ ++C KK R C+ ++
Sbjct: 121 QVINELKNTVYRPKICVLGSREQLCINPEV---KRQESNHMQIYMCRKKVMARACHFYNN 177
Query: 168 VADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRK 227
V + L D +DIEDLV G CPY+++R L++ DI+F PYNYL+D R+
Sbjct: 178 VEE-KSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLDAKSRR 236
Query: 228 GLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACIS-------EAKNCI---DIS 277
+E K +++I DEAHN+E +C +++SFDL++ L + I E + +++
Sbjct: 237 AHNIELKGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEEQAKVVQQNEVN 296
Query: 278 STRRGQS-SDETLNPD--NFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADL 334
+ +S S LN + + A ++ +LL+LE I V + + G TK G YI+EL A
Sbjct: 297 AEFNMESISSAGLNMELEDIAKIKKILLQLESAIDAVELPPNDSGVTKDGSYIFELFAQA 356
Query: 335 NITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
IT +T L++ ++ ++LQ + + +S+I++ +F
Sbjct: 357 QITFQTKTSLLESLD---QILQFLSGRTGIFINTSGLHKLSDIIQTVF 401
>UNIPROTKB|F1NE49 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 GO:GO:0000723
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 OMA:VLKMQFL
EMBL:AADN02019151 EMBL:AADN02019152 EMBL:AADN02019153
IPI:IPI00597328 Ensembl:ENSGALT00000009881 ArrayExpress:F1NE49
Uniprot:F1NE49
Length = 1127
Score = 787 (282.1 bits), Expect = 6.8e-141, Sum P(2) = 6.8e-141
Identities = 158/345 (45%), Positives = 217/345 (62%)
Query: 390 SAYYRVHVREADANA------ADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSII 439
S YY+VH+ ++N D+ A++ TLS+WCF+PG +M E R V +II
Sbjct: 421 SRYYKVHIHLDNSNQKKKKERTDLWDSSAAKKQGKTLSYWCFSPGYSMHELVRQGVRTII 480
Query: 440 LTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIE 499
LTSGTLSP+ SF E+++ FP+ +ENPHVI +Q+W GI+P GP G +LNS+Y R S +
Sbjct: 481 LTSGTLSPLSSFTMEMQIPFPVLLENPHVIDKRQLWVGIIPKGPDGTVLNSAYERRFSED 540
Query: 500 YKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVV 559
Y LG TI N+ R+VP GLL+FFPSY +MD+ + W+ +RI + K V
Sbjct: 541 YLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLEYWREHDFA------KRIEEVKPMFV 594
Query: 560 EPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFAT 619
EPR F ++ Y +K+ ++GA F AVCRGK SEGLDFAD GR V+ITG+PF
Sbjct: 595 EPRNKGSFAEVMDAYYSKIACPKSNGAAFLAVCRGKASEGLDFADMNGRGVIITGLPFPP 654
Query: 620 MTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDY 679
+P+V LK ++L+ +S G LSG WYNQQASRAVNQA+GRVIRHR DY
Sbjct: 655 RWEPRVVLKMQFLNEMKKSNMGA------QCLSGHQWYNQQASRAVNQAIGRVIRHRQDY 708
Query: 680 GAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
GAI CD+RF + + ++ W++P++ Y FG V +++ FFR
Sbjct: 709 GAIFLCDDRFTTDNVRGKLPSWVRPYVNVYDNFGHAVRSVSVFFR 753
Score = 617 (222.3 bits), Expect = 6.8e-141, Sum P(2) = 6.8e-141
Identities = 149/408 (36%), Positives = 224/408 (54%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP +RG+ V+FPF+ Y+CQ YM KV++ LQ K N +LESPTGTGKTLCLLC+TLAWR
Sbjct: 3 MPRVTLRGVTVDFPFQPYECQETYMAKVLECLQTKVNGILESPTGTGKTLCLLCSTLAWR 62
Query: 61 KSL-GSFST-----------LXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLR 108
+ + S L +P I+Y SRTHSQL
Sbjct: 63 EHFKDTISARKIAQRMNGVELFPDRPMSSWGNAATDGDIPTYYTDIPKIIYASRTHSQLT 122
Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLC-KKGTNRRCNHHSR 167
QVI ELK + YRPK+ +LGSREQLCI+ EV + N+ ++C KK R C+ ++
Sbjct: 123 QVINELKNTVYRPKICVLGSREQLCINPEV---KRQESNHMQIYMCRKKVMARACHFYNN 179
Query: 168 VADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRK 227
V + L D +DIEDLV G CPY+++R L++ DI+F PYNYL+D R+
Sbjct: 180 VEE-KSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLDAKSRR 238
Query: 228 GLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACIS-------EAKNCI---DIS 277
+E K +++I DEAHN+E +C +++SFDL++ L + I E + +++
Sbjct: 239 AHNIELKGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEEQAKVVQQNEVN 298
Query: 278 STRRGQS-SDETLNPD--NFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADL 334
+ +S S LN + + A ++ +LL+LE I V + + G TK G YI+EL A
Sbjct: 299 AEFNMESISSAGLNMELEDIAKIKKILLQLESAIDAVELPPNDSGVTKDGSYIFELFAQA 358
Query: 335 NITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
IT +T L++ ++ ++LQ + + +S+I++ +F
Sbjct: 359 QITFQTKTSLLESLD---QILQFLSGRTGIFINTSGLHKLSDIIQTVF 403
>UNIPROTKB|Q7QEI1 [details] [associations]
symbol:AGAP000634 "Regulator of telomere elongation
helicase 1 homolog" species:7165 "Anopheles gambiae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:AAAB01008847 HOGENOM:HOG000007558 KO:K11136 OrthoDB:EOG4S4MX7
RefSeq:XP_311162.5 GeneID:1272449 KEGG:aga:AgaP_AGAP000634
VectorBase:AGAP000634 CTD:1272449 PhylomeDB:Q7QEI1 Uniprot:Q7QEI1
Length = 991
Score = 726 (260.6 bits), Expect = 1.9e-137, Sum P(3) = 1.9e-137
Identities = 145/315 (46%), Positives = 206/315 (65%)
Query: 413 SRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSK 472
S+ +++WCFNPG M++ SIILTSGTL+P+ F EL L + +ENPH+I
Sbjct: 452 SKVINFWCFNPGFGMRQLVDSGTRSIILTSGTLAPLKPFISELSLPVAVSLENPHIIARS 511
Query: 473 QIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQC 532
Q++ ++ GP LNSS++NR + EY LG T +++ I+P GLLIFFPSY L+++C
Sbjct: 512 QVYVKVITHGPDRVELNSSFKNRSNPEYIASLGRTALSLCPIIPGGLLIFFPSYPLLNKC 571
Query: 533 IACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVC 592
W+ + IW +I + K+ VEPR F + +Y A+++D ++ GA+F AVC
Sbjct: 572 SEEWQASG------IWGQISRLKQIFVEPRGKDQFTTTMAEYYAQVRDPASRGAIFMAVC 625
Query: 593 RGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLS 652
RGKVSEGLDFAD GRAV+ITG+PF M D +V LK++YLD +E +L ++
Sbjct: 626 RGKVSEGLDFADANGRAVMITGLPFPPMMDARVVLKKQYLDTNRT------RENEL--IT 677
Query: 653 GEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYS-- 710
G DWY+ +ASRAVNQA+GRVIRH+ DYGAI+ CD RF + +++Q+S WI H++ S
Sbjct: 678 GNDWYSLEASRAVNQAIGRVIRHKDDYGAILLCDSRFQNARQQAQLSAWIHSHLRESSAV 737
Query: 711 -KFGDVVYTLTRFFR 724
FG VV ++RFFR
Sbjct: 738 PNFGTVVGEMSRFFR 752
Score = 632 (227.5 bits), Expect = 1.9e-137, Sum P(3) = 1.9e-137
Identities = 155/446 (34%), Positives = 235/446 (52%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW- 59
MP Y I GI V FPFE Y+ Q YM KVI+ LQNK N +LESPTGTGKTL LLC+++AW
Sbjct: 1 MPEYMINGIPVNFPFEPYELQKNYMAKVIECLQNKTNGVLESPTGTGKTLSLLCSSMAWL 60
Query: 60 --RKS------LGSFSTL------XXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHS 105
KS + + TL K+ I+Y SRTHS
Sbjct: 61 LHMKSKQPKHRMETIDTLPEPPELSNAKHAALDPEQALALQQQKANAKMK-IIYASRTHS 119
Query: 106 QLRQVIQELKTSNYR-PKMVILGSREQLCIHREVSLLRGSAQNNACR-FLCKKGTN-RRC 162
QL Q +QELK ++Y + +ILGSR+QLCIH ++S +NNA + LC++ R C
Sbjct: 120 QLSQAMQELKNTSYLFVRSIILGSRDQLCIHPDIS----KQENNAIKTVLCRESVKARNC 175
Query: 163 NHHSRVADYMKNNPHLGDEPI-DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLI 221
+ ++RV + K+ P + P+ DIEDLV +GR CPY++++EL + D++F PYNYL+
Sbjct: 176 SFYNRV-ETAKDRPDVATVPVMDIEDLVTVGRKLKACPYYLSKELVEQADVIFMPYNYLL 234
Query: 222 DPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEA----KNCIDIS 277
DP RK G+ +N+++I DEAHN+E +C + S L S + I + K+ +D
Sbjct: 235 DPKARKSNGLSLQNTVIILDEAHNVEKMCEEVGSALLRSSDIALAIEDTSSVIKSMMDGG 294
Query: 278 STRRGQSSDET-LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNI 336
G + L D+ +L+ +LL +EK + ++PI + G T PG YI++LL NI
Sbjct: 295 GAWTGDGEKQLELTLDDLVLLKEILLGVEKAVDDIPILFSQGGTTHPGTYIFDLLEKANI 354
Query: 337 TQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAH----SAY 392
++ ++ + +K A ++S+ + L+++F G +
Sbjct: 355 KFGNINVVLQVMNSLITHITTEKTGGFVRRGA-GLQSMVDFLEVVFASSGPEYRQAVEKC 413
Query: 393 YRVHVREADANAADVLKGKASRTLSW 418
+RVH+ + + KG R W
Sbjct: 414 FRVHIEPEEPK--QLAKGGVKRADGW 437
Score = 38 (18.4 bits), Expect = 1.9e-137, Sum P(3) = 1.9e-137
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 963 FLIQVQEKLSATEYKEFV 980
FL +V+ LSA YK F+
Sbjct: 912 FLREVKCSLSAGSYKTFL 929
>UNIPROTKB|B3NSW1 [details] [associations]
symbol:GG18780 "Regulator of telomere elongation helicase 1
homolog" species:7220 "Drosophila erecta" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 TIGRFAMs:TIGR00604 EMBL:CH954180
KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001977003.1
EnsemblMetazoa:FBtr0138834 GeneID:6550838 KEGG:der:Dere_GG18780
FlyBase:FBgn0110988 Uniprot:B3NSW1
Length = 985
Score = 750 (269.1 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
Identities = 150/320 (46%), Positives = 210/320 (65%)
Query: 411 KASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
K ++ +++WCFNPG M++ +V S+ILTSGTL+P+ EL + +ENPH++
Sbjct: 449 KVAKIINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVD 508
Query: 471 SKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMD 530
Q++ I+ GP L S+Y NRD+ +Y LG TI+N++RIVPDGLL+FFPSY +++
Sbjct: 509 QSQVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLN 568
Query: 531 QCIACWKNTSHGNLTTIWERI-CKHKKPV-VEPRQSSLFPLAIEDYMAKLKDTSTSGAVF 588
+C+ W+ + +W I CK KP+ +EPR F +E++ ++D+ GAVF
Sbjct: 569 KCVDAWQASG------LWADISCK--KPIFLEPRSKDQFTSTMEEFYQAIRDSK--GAVF 618
Query: 589 FAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKL 648
AVCRGKVSEGLDFAD GRAV+ITG+PF + DPKV LKR YL+ +E +L
Sbjct: 619 MAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLE------ANRTRENQL 672
Query: 649 SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI-- 706
LSG++WYN A+RAVNQA+GRVIRHR+DYGAI+ CD RF S+ Q+S WI+ H+
Sbjct: 673 --LSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 730
Query: 707 --QCYSKFGDVVYTLTRFFR 724
QC S FG +V L +FF+
Sbjct: 731 RPQC-SPFGPIVRELRQFFK 749
Score = 615 (221.5 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
Identities = 158/443 (35%), Positives = 231/443 (52%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW- 59
MP I GI V FPFE Y Q YMEKVIQ L++ N +LESPTGTGKTL LLC++LAW
Sbjct: 1 MPESLIAGIPVHFPFEPYPVQRAYMEKVIQCLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 60 --RKS----------LGSFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQL 107
R+S FS L +P ++Y SRTHSQL
Sbjct: 61 RTRQSEHQQQMVKIEKADFSGLAGGATGGELSDLGKTMGRANNWG-VPKVIYASRTHSQL 119
Query: 108 RQVIQELKTSNY-RPKMVILGSREQLCIHREVSLLRGSA-QNNACRFLCKKGTNRRCNHH 165
Q ++ELK + Y + V+LGSR+QLCIH EV +G++ + N C+ T C
Sbjct: 120 TQAMRELKRTAYANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHSKT---CTFQ 176
Query: 166 SRVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPW 224
RV + K++P L G +DIEDLV +G+ CPYF +REL DI F PYNYL+DP
Sbjct: 177 MRV-ESRKDHPDLRGPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPK 235
Query: 225 FRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQ- 283
RK +E N+I+I DEAHN+E IC ++AS + S + I + + + + ++ Q
Sbjct: 236 ARKANKIELGNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQD 295
Query: 284 -SSDET--LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQET 340
+ DE D+ +L+ +LL+LEK I V +++ G T P +YELL N T
Sbjct: 296 MAGDEPKDFTLDDLTLLKEMLLELEKAIDAVVVDNAAEGTTFPASLMYELLGKANFTYGN 355
Query: 341 AYKLIDIVEVAAE--LLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYY---RV 395
++ +++ + L+ ++ +K T +S++L I+F +K S Y +V
Sbjct: 356 VATIVSLLDKLVQYLLVASQQMSIRKGGT---FTMLSDLLTIVFANKQDVMSKVYASFKV 412
Query: 396 HVREADANAADVLKGKASRTLSW 418
HV+ ++ + A + W
Sbjct: 413 HVQMEESKQGHGKQQGAKQQGGW 435
>UNIPROTKB|B4PZB4 [details] [associations]
symbol:GE16425 "Regulator of telomere elongation helicase 1
homolog" species:7245 "Drosophila yakuba" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CM000162 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_002099973.1
EnsemblMetazoa:FBtr0262943 GeneID:6524109 KEGG:dya:Dyak_GE16425
FlyBase:FBgn0233951 Uniprot:B4PZB4
Length = 985
Score = 749 (268.7 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 149/319 (46%), Positives = 209/319 (65%)
Query: 411 KASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
K ++ +++WCFNPG M++ +V S+ILTSGTL+P+ EL + +ENPH++
Sbjct: 449 KVAKIINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVD 508
Query: 471 SKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMD 530
Q++ I+ GP L S+Y NRD+ +Y LG TI+N++RIVPDGLL+FFPSY +++
Sbjct: 509 QSQVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLN 568
Query: 531 QCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+C+ W+ + +W I KKP+ +EPR F +E++ ++D+ GAVF
Sbjct: 569 KCVDAWQASG------LWADISV-KKPIFLEPRSKDQFTSTMEEFYQAIRDSK--GAVFM 619
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLS 649
AVCRGKVSEGLDFAD GRAV+ITG+PF + DPKV LKR YL+ +E +L
Sbjct: 620 AVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLE------ANRTRENQL- 672
Query: 650 FLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI--- 706
LSG++WYN A+RAVNQA+GRVIRHR+DYGAI+ CD RF S+ Q+S WI+ H+
Sbjct: 673 -LSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGDR 731
Query: 707 -QCYSKFGDVVYTLTRFFR 724
QC S FG +V L +FF+
Sbjct: 732 PQC-SPFGPIVRELRQFFK 749
Score = 608 (219.1 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 167/486 (34%), Positives = 243/486 (50%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW- 59
MP I GI V FPFE Y Q YMEKVIQ L++ N +LESPTGTGKTL LLC++LAW
Sbjct: 1 MPESLIAGIPVHFPFEPYPVQRAYMEKVIQCLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 60 --RKSLGSFSTLXXXXXXXXXXXXXXXXXXXXXXXK---------LPTILYTSRTHSQLR 108
R+S + K +P ++Y SRTHSQL
Sbjct: 61 RTRQSEHQQQMVKMEKADFTGLGGGAAGGDLSELAKTMGRANNWGVPKVIYASRTHSQLT 120
Query: 109 QVIQELKTSNY-RPKMVILGSREQLCIHREVSLLRGSA-QNNACRFLCKKGTNRRCNHHS 166
Q ++ELK + Y + V+LGSR+QLCIH EV +G++ + N C+ T C+
Sbjct: 121 QAMRELKRTAYANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHSKT---CSFQM 177
Query: 167 RVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWF 225
RV + K++P L G +DIEDLV +G+ CPYF +REL DI F PYNYL+DP
Sbjct: 178 RV-ESRKDHPDLRGPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKA 236
Query: 226 RKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQS- 284
RK +E N+I+I DEAHN+E IC ++AS + S + I + + + + ++ Q
Sbjct: 237 RKANKIELGNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQDM 296
Query: 285 -SDET--LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETA 341
DE D+ +L+ +LL+ EK I V + + G T P +YELL N T
Sbjct: 297 GGDEPKDFTLDDLTLLKEMLLEFEKAIDAVVVENAVEGTTFPASMMYELLGKANFTYGNV 356
Query: 342 YKLIDIVEVAAE--LLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYY---RVH 396
++ +++ + L+ ++ +K T +S++L I+F +K S Y +VH
Sbjct: 357 ATIVSLLDKLVQYLLVASQQMTIRKGGT---FTMLSDLLTIVFANKEDVMSKVYASFKVH 413
Query: 397 VREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELK 456
V+ + K + + W IA S ++V II +P F E
Sbjct: 414 VQLEEVKQGHG-KQQGGKQHGGWLGKGTIAAATGS-IKVAKII-NFWCFNP--GFGMEQL 468
Query: 457 LNFPLR 462
LN +R
Sbjct: 469 LNTQVR 474
>FB|FBgn0029798 [details] [associations]
symbol:CG4078 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 EMBL:AE014298 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 KO:K11136 OMA:PFPPLKD
OrthoDB:EOG4S4MX7 EMBL:BT021290 EMBL:EU217688 EMBL:EU217689
EMBL:EU217690 EMBL:EU217691 EMBL:EU217692 EMBL:EU217693
EMBL:EU217694 EMBL:EU217695 EMBL:EU217696 EMBL:EU217697
EMBL:EU217698 EMBL:EU217699 RefSeq:NP_572254.1 UniGene:Dm.11709
ProteinModelPortal:Q9W484 SMR:Q9W484 IntAct:Q9W484
MINT:MINT-4080348 PaxDb:Q9W484 PRIDE:Q9W484
EnsemblMetazoa:FBtr0070807 EnsemblMetazoa:FBtr0332398 GeneID:31497
KEGG:dme:Dmel_CG4078 UCSC:CG4078-RA FlyBase:FBgn0029798
InParanoid:Q9W484 PhylomeDB:Q9W484 GenomeRNAi:31497 NextBio:773915
Bgee:Q9W484 Uniprot:Q9W484
Length = 985
Score = 753 (270.1 bits), Expect = 3.2e-136, Sum P(2) = 3.2e-136
Identities = 151/320 (47%), Positives = 210/320 (65%)
Query: 411 KASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
K ++ +++WCFNPG M++ +V S+ILTSGTL+P+ EL + +ENPH++
Sbjct: 449 KVAKIINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVD 508
Query: 471 SKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMD 530
Q++ I+ GP L S+Y NRD+ +Y LG TI+N+ARIVPDGLL+FFPSY +++
Sbjct: 509 QSQVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLN 568
Query: 531 QCIACWKNTSHGNLTTIWERI-CKHKKPV-VEPRQSSLFPLAIEDYMAKLKDTSTSGAVF 588
+C+ W+ + +W I CK KP+ +EPR F +E++ ++D+ GAVF
Sbjct: 569 KCVDAWQASG------LWADISCK--KPIFLEPRSKDQFTSTMEEFYQAIRDSK--GAVF 618
Query: 589 FAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKL 648
AVCRGKVSEGLDFAD GRAV+ITG+PF + DPKV LKR YL+ +E +L
Sbjct: 619 MAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLE------ANRTRENQL 672
Query: 649 SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI-- 706
LSG++WYN A+RAVNQA+GRVIRHR+DYGAI+ CD RF S+ Q+S WI+ H+
Sbjct: 673 --LSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 730
Query: 707 --QCYSKFGDVVYTLTRFFR 724
QC S FG +V L +FF+
Sbjct: 731 RPQC-SPFGPIVRELRQFFK 749
Score = 602 (217.0 bits), Expect = 3.2e-136, Sum P(2) = 3.2e-136
Identities = 154/422 (36%), Positives = 224/422 (53%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW- 59
MP I GI V FPFE Y Q YMEKVI L++ N +LESPTGTGKTL LLC++LAW
Sbjct: 1 MPESLIAGIPVHFPFEPYPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 60 --RKS----------LGSFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQL 107
R+S FS L +P ++Y SRTHSQL
Sbjct: 61 RTRQSEHQKQMVKMEKADFSGLGGGAPGGDLSELAKTMGRANNWG-VPKVIYASRTHSQL 119
Query: 108 RQVIQELKTSNY-RPKMVILGSREQLCIHREVSLLRGSA-QNNACRFLCKKGTNRRCNHH 165
Q ++ELK + Y + V+LGSR+QLCIH EV +G++ + N C+ T C+
Sbjct: 120 TQAMRELKRTAYANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHSKT---CSFQ 176
Query: 166 SRVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPW 224
RV + K++P L G +DIEDLV +G+ CPYF +REL DI F PYNYL+DP
Sbjct: 177 MRV-ESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPK 235
Query: 225 FRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQ- 283
RK +E N+I+I DEAHN+E IC ++AS + S + I + + + + ++ Q
Sbjct: 236 ARKANKIELGNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQD 295
Query: 284 -SSDET--LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQET 340
+ DE D+ +L+ +LL+LEK I + +++ G T P +YELL N T
Sbjct: 296 MAGDEPKDFTLDDLTLLKEMLLELEKAIDAIVVDNAVDGTTFPASMMYELLGKANFTYGN 355
Query: 341 AYKLIDIVEVAAE--LLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYY---RV 395
++ +++ + L+ ++ +K T +S++L I+F +K S Y +V
Sbjct: 356 VATIVSLLDKLVQYLLVASQQMSIRKGGT---FTLLSDLLTIVFANKEDVMSKVYASFKV 412
Query: 396 HV 397
HV
Sbjct: 413 HV 414
>UNIPROTKB|B4NDG5 [details] [associations]
symbol:GK24923 "Regulator of telomere elongation helicase 1
homolog" species:7260 "Drosophila willistoni" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 EMBL:CH964239 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
RefSeq:XP_002071885.1 STRING:B4NDG5 EnsemblMetazoa:FBtr0255574
GeneID:6648559 KEGG:dwi:Dwil_GK24923 FlyBase:FBgn0226882
InParanoid:B4NDG5 Uniprot:B4NDG5
Length = 998
Score = 751 (269.4 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 148/327 (45%), Positives = 211/327 (64%)
Query: 403 NAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLR 462
N ++ ++ +++WCFNPG M++ +V S+ILTSGTL+P+ EL +
Sbjct: 447 NTSNSSSSNKAKVINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQH 506
Query: 463 VENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIF 522
+ENPH++ Q++ I+ GP L S+++NRD+ +Y LG TI+N++RIVPDGLL+F
Sbjct: 507 LENPHIVDQSQVYVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVSRIVPDGLLVF 566
Query: 523 FPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSLFPLAIEDYMAKLKDT 581
FPSY ++++C+ W+ + +W I KKP+ +EPR F +E++ ++D+
Sbjct: 567 FPSYPMLNKCVDAWQTSG------LWADIAA-KKPIFLEPRGKDQFTTTMEEFYQAIRDS 619
Query: 582 STSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGG 641
GA F AVCRGKVSEGLDFAD GRAV+ITG+P+ + DPKV LKR YL+
Sbjct: 620 K--GACFMAVCRGKVSEGLDFADRNGRAVIITGLPYPPLKDPKVILKRRYLE------AN 671
Query: 642 EYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLW 701
KE +L L+G++WYN A+RAVNQA+GRVIRHRHDYGAI+ CD RF S+ Q+S W
Sbjct: 672 RTKENQL--LTGQEWYNLDATRAVNQAIGRVIRHRHDYGAILLCDSRFQDNSQVQQLSKW 729
Query: 702 IQPHI----QCYSKFGDVVYTLTRFFR 724
I+ H+ QC S FG +V L +FFR
Sbjct: 730 IRGHLGARPQC-SPFGPIVRELRQFFR 755
Score = 601 (216.6 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 158/434 (36%), Positives = 228/434 (52%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW- 59
MP I GI V FPFE Y+ Q +MEKVI L++ N +LESPTGTGKTL LLC++LAW
Sbjct: 1 MPESIIAGIPVHFPFEPYEVQRAFMEKVIICLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 60 --RKS-----------LGSFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQ 106
R+S + + + +P ++Y SRTHSQ
Sbjct: 61 RTRQSEQQKQIRKLQDAANNTKVGPTGIVPGEAAELALTVGKANNWGVPKVIYASRTHSQ 120
Query: 107 LRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQN-NACRFLCKKGTNRRCNH 164
L Q ++ELK S Y + V+LGSR+QLCIH EV +G++ N C+ T C+
Sbjct: 121 LTQAMRELKRSAYAGMRSVVLGSRDQLCIHPEVMREQGNSNKVNMCKMRVHSKT---CSF 177
Query: 165 HSRVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDP 223
RV + K++P G +DIEDLV +G+ CPYF ++EL DI F PYNYL+DP
Sbjct: 178 QLRV-ESKKDHPDFRGPSIMDIEDLVKVGQKLKMCPYFASKELVNDADITFMPYNYLLDP 236
Query: 224 WFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQ 283
RK +E N+I+I DEAHN+E IC ++AS + S + I + + + I ++ Q
Sbjct: 237 MARKANKIELSNTIVILDEAHNIEKICEESASVQIKSSDVAVAIEDVTHIMRIFTSADSQ 296
Query: 284 --SSDET--LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQE 339
S DE D+ +L+ +LL+LEK I V +++ G T P Y+YELLA N T
Sbjct: 297 DFSGDEPKDFTLDDLTLLKEMLLELEKAIDGVVVDNLAEGTTYPASYMYELLAKANFTYG 356
Query: 340 TAYKLIDIVEVAAELLQEDKLQNKKSTTACRIES---ISNILKIIFRDK----GTAHSAY 392
++ +++ + L QN S + S ++ +L I+F +K H ++
Sbjct: 357 NCASIVALLDKLVQYLMVAS-QNNSSMIMRKGGSFLVLAELLTIVFANKEDIMAKVHRSF 415
Query: 393 YRVHVR--EADANA 404
+VHV EA NA
Sbjct: 416 -KVHVEVEEAKQNA 428
Score = 43 (20.2 bits), Expect = 3.2e-55, Sum P(2) = 3.2e-55
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQYLMNNS 1036
GP+R L+ FK+ KY Q ++N S
Sbjct: 526 GPDRQQLISNFKNRDNPKYISSLGQTILNVS 556
>UNIPROTKB|B4M891 [details] [associations]
symbol:GJ16649 "Regulator of telomere elongation helicase 1
homolog" species:7244 "Drosophila virilis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 EMBL:CH940653 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
RefSeq:XP_002056881.1 EnsemblMetazoa:FBtr0232574 GeneID:6633257
KEGG:dvi:Dvir_GJ16649 FlyBase:FBgn0203833 InParanoid:B4M891
Uniprot:B4M891
Length = 1005
Score = 746 (267.7 bits), Expect = 8.4e-136, Sum P(2) = 8.4e-136
Identities = 159/374 (42%), Positives = 230/374 (61%)
Query: 383 RDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTS 442
+ K A+SA + NAA + KA++ +++WCFNPG M++ V S+ILTS
Sbjct: 422 QSKNAANSAKPQTGWLGKGNNAASSVT-KAAKIINFWCFNPGFGMEQLLNAHVRSVILTS 480
Query: 443 GTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQ 502
GTL+P+ EL + +ENPH++ Q++ I+ GP L S+Y+NRD+ +Y
Sbjct: 481 GTLAPLKPLIAELAIPVAQHLENPHIVDRSQVYVKIIGTGPDREQLISNYKNRDNPKYIS 540
Query: 503 ELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERI-CKHKKPV-VE 560
LG TI+N++RIVPDGLL+FFPSY +++QC+ W+ + +W I C+ KP+ +E
Sbjct: 541 SLGQTILNVSRIVPDGLLVFFPSYPMLNQCVDAWQASG------LWADISCR--KPIFLE 592
Query: 561 PRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATM 620
PR F +E++ ++D+ GA F AVCRGKVSEGLDFAD GRAV+ITG+PF +
Sbjct: 593 PRGKDQFTSTMEEFYQAIRDSK--GACFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPL 650
Query: 621 TDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYG 680
DPKV LKR YL+ KE +L LSG++WYN A+RAVNQA+GRVIRHR+DYG
Sbjct: 651 KDPKVVLKRRYLETNRT------KENQL--LSGQEWYNLDATRAVNQAIGRVIRHRNDYG 702
Query: 681 AIIFCDERFAHPSRKSQISLWIQPHIQCY---SKFGDVVYTLTRFFRE-ERICGSTNLKL 736
AI+ CD RF S+ Q+S WI+ H+ S FG +V L +FF+ E+ ++
Sbjct: 703 AILLCDARFQDMSQVQQLSKWIRGHLGARPQSSPFGPIVRELRQFFKHAEQTMAQPEERV 762
Query: 737 IKTEVSGDVRELKP 750
++ + +E +P
Sbjct: 763 VEPLLQTVCKEEQP 776
Score = 605 (218.0 bits), Expect = 8.4e-136, Sum P(2) = 8.4e-136
Identities = 154/440 (35%), Positives = 222/440 (50%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW- 59
MP I GI V FPFE Y+ Q YMEKVI L++ N +LESPTGTGKTL LLCA+LAW
Sbjct: 1 MPENIIAGIPVHFPFEPYEVQRAYMEKVIMCLRDGTNGVLESPTGTGKTLSLLCASLAWI 60
Query: 60 --RKS--------LGSFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQ 109
R+S L +P ++Y SRTHSQL Q
Sbjct: 61 RTRQSEQQQYMQKLQLDQQKQATGGAGAGVADLNAVMGKANNWGVPKVIYASRTHSQLSQ 120
Query: 110 VIQELKTSNY-RPKMVILGSREQLCIHREVSLLRGSAQN-NACRFLCKKGTNRRCNHHSR 167
++ELK + Y K V+LGSR+QLCIH +V +G++ N C+ K + C+ R
Sbjct: 121 AMRELKRTAYANMKSVVLGSRDQLCIHPDVMREQGNSNKVNMCKL---KVHAKTCSFQLR 177
Query: 168 VADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFR 226
V + K++P G +DIEDLV +G+ CPYF ++EL DI F PYNYL+DP R
Sbjct: 178 V-ESKKDHPDFRGPSIMDIEDLVKVGQRLKMCPYFASKELVNGADITFMPYNYLLDPKAR 236
Query: 227 KGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSD 286
K +E N+I+I DEAHN+E IC ++AS + S + I + + + I ++ Q +
Sbjct: 237 KANKIELSNTIVILDEAHNIEKICEESASVQIRSSDVAMAIEDITHIMKIFTSGDAQDTG 296
Query: 287 ETLNP-----DNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETA 341
P D+ +L+ +LL+LEK I V +++K G T P +IYELL N T
Sbjct: 297 GPEEPKDFTLDDLTLLKEMLLELEKAIDGVVVDNKAEGTTYPAAHIYELLGKANFTYGNC 356
Query: 342 YKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYR---VHVR 398
++ +++ + L + ++++L I+F +K S +R VHV
Sbjct: 357 ATIVALLDKLVQYLMVASQHSTMLRKGGSFMVLADLLNIVFANKEDVMSKVHRSFKVHVE 416
Query: 399 EADANAADVLKGKASRTLSW 418
D + A W
Sbjct: 417 IEDNKQSKNAANSAKPQTGW 436
Score = 39 (18.8 bits), Expect = 3.1e-55, Sum P(2) = 3.1e-55
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQYLMNNS 1036
GP+R L+ +K+ KY Q ++N S
Sbjct: 520 GPDREQLISNYKNRDNPKYISSLGQTILNVS 550
>UNIPROTKB|B4L1Z2 [details] [associations]
symbol:GI15901 "Regulator of telomere elongation helicase 1
homolog" species:7230 "Drosophila mojavensis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 TIGRFAMs:TIGR00604
EMBL:CH933810 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_002010396.1
EnsemblMetazoa:FBtr0166626 GeneID:6584754 KEGG:dmo:Dmoj_GI15901
FlyBase:FBgn0138650 InParanoid:B4L1Z2 Uniprot:B4L1Z2
Length = 1014
Score = 750 (269.1 bits), Expect = 2.2e-135, Sum P(2) = 2.2e-135
Identities = 179/484 (36%), Positives = 265/484 (54%)
Query: 403 NAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLR 462
NA + K ++ +++WCFNPG M++ +V S+ILTSGTL+P+ EL +
Sbjct: 443 NATSTVS-KTAKIINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQH 501
Query: 463 VENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIF 522
+ENPH++ Q++ I+ GP L S+Y+NRD+ +Y LG TI+N++RIVPDGLL+F
Sbjct: 502 LENPHIVDQSQVYVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVF 561
Query: 523 FPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTS 582
FPSY +++QC+ W+ + +W + K +EPR F +E++ ++D+
Sbjct: 562 FPSYPMLNQCVDAWQASG------LWADLSSRKPIFLEPRGKDQFTSTMEEFYQAIRDSK 615
Query: 583 TSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGE 642
GA F AVCRGKVSEGLDFAD GRAV+ITG+PF + DPKV LKR YL+
Sbjct: 616 --GACFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLETNRT----- 668
Query: 643 YKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWI 702
KE +L LSG++WYN A+RAVNQA+GRVIRHRHDYGAI+ CD RF S+ Q+S WI
Sbjct: 669 -KENQL--LSGQEWYNLDATRAVNQAIGRVIRHRHDYGAILLCDARFQDASQVQQLSKWI 725
Query: 703 QPHIQCY---SKFGDVVYTLTRFFRE-ERICGSTNLKLIKTEVSGDVRELKPV---DLLD 755
+ H+ S FG +V L +FF+ E+ + ++++ + +E +P
Sbjct: 726 RGHLGARPQSSPFGPIVRELRQFFKHAEQTMVQPDERVVEPPLQIVCKEEQPTLTPSYNS 785
Query: 756 KISLEEVPSSTPAVDQACYSLH---EVKNRNTSSHSGEIVPA----NRSSLSPYKGIWAS 808
++ P S Q L E+ N S + V A N+S +P + S
Sbjct: 786 NTQIKREPGSGVNKFQLASELAAKAEMANSIKSWTPADYVNAAGCTNQSQTAPNAMDFMS 845
Query: 809 ELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKVL 868
L ++ I F L+ I R+ T+N SL + ++ +LI+ K +
Sbjct: 846 RLNSNVTSIDFNNTDLVK----IHKRERS--SPTANESLTSGKKRFKLISSTDMVKTEPG 899
Query: 869 ISES 872
S S
Sbjct: 900 TSNS 903
Score = 597 (215.2 bits), Expect = 2.2e-135, Sum P(2) = 2.2e-135
Identities = 150/443 (33%), Positives = 226/443 (51%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW- 59
MP I GI V FPFE Y+ Q +MEKVI L++ N +LESPTGTGKTL LLC++LAW
Sbjct: 1 MPESIIAGIPVHFPFEPYEVQRAFMEKVIMCLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 60 --RKS-----LGSFSTLXXXXXXXXXXXXXXXXXXXXXXXK-----LPTILYTSRTHSQL 107
R+S + K +P ++Y SRTHSQL
Sbjct: 61 RTRQSEHQINMQKLQMEQQQRQATGGSATGAISDLALTMGKANNWGVPKVIYASRTHSQL 120
Query: 108 RQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQN-NACRFLCKKGTNRRCNHH 165
Q ++ELK + Y + V+LGSR+QLCIH +V +G++ N C+ K + C+
Sbjct: 121 TQAMRELKRTAYASMRSVVLGSRDQLCIHPDVMKEQGNSNKVNMCKL---KVHAKTCSFQ 177
Query: 166 SRVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPW 224
RV + K++P G +DIEDLV +G+ CPY+ ++EL + DI F PYNYL+DP
Sbjct: 178 LRV-ESKKDHPDFRGPSIMDIEDLVKVGQRLKMCPYYASKELVSSADITFMPYNYLLDPK 236
Query: 225 FRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQS 284
RK +E N+I+I DEAHN+E IC ++AS + S + I + + + I ++ Q
Sbjct: 237 ARKANKIELSNTIVILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKIFTSADSQD 296
Query: 285 SDETLNP-----DNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQE 339
S P D+ +L+ +LL+LEK I V + ++ G T P +IYELL N T
Sbjct: 297 SGGPEEPKDFTLDDLTLLKEMLLELEKAIDGVVVENQVEGTTYPAAHIYELLGKANFTYG 356
Query: 340 TAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDK----GTAHSAYYRV 395
++ +++ + L Q+ +S++L ++F +K H ++ +V
Sbjct: 357 NCATIVALLDKLVQYLMVAS-QHSMLRKGGSFMVLSDLLNVVFANKEDIMAKVHRSF-KV 414
Query: 396 HVREADANAADVLKGKASRTLSW 418
HV+ D S+ W
Sbjct: 415 HVQIEDTKQTKPAGNSNSKQTGW 437
Score = 457 (165.9 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 138/400 (34%), Positives = 193/400 (48%)
Query: 547 IWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHA 606
+W + K +EPR F +E++ ++D+ GA F AVCRGKVSEGLDFAD
Sbjct: 580 LWADLSSRKPIFLEPRGKDQFTSTMEEFYQAIRDSK--GACFMAVCRGKVSEGLDFADRN 637
Query: 607 GRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVN 666
GRAV+ITG+PF + DPKV LKR YL+ KE +L LSG++WYN A+RAVN
Sbjct: 638 GRAVIITGLPFPPLKDPKVILKRRYLETNRT------KENQL--LSGQEWYNLDATRAVN 689
Query: 667 QAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCY---SKFGDVVYTLTRFF 723
QA+GRVIRHRHDYGAI+ CD RF S+ Q+S WI+ H+ S FG +V L +FF
Sbjct: 690 QAIGRVIRHRHDYGAILLCDARFQDASQVQQLSKWIRGHLGARPQSSPFGPIVRELRQFF 749
Query: 724 REERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQACYSLHEV---- 779
+ +T V D R ++P L + EE P+ TP+ + E
Sbjct: 750 KHAE----------QTMVQPDERVVEPP--LQIVCKEEQPTLTPSYNSNTQIKREPGSGV 797
Query: 780 -KNRNTSSHSGEIVPANR-SSLSPYKGIWASELKNSS----DLIQFEKKLLLSGRKSIQY 833
K + S + + AN S +P + A+ N S + + F +L S SI +
Sbjct: 798 NKFQLASELAAKAEMANSIKSWTPADYVNAAGCTNQSQTAPNAMDFMSRLN-SNVTSIDF 856
Query: 834 RDHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQCVKKISEIASDAESSQP 893
+ + + + + P E + S KKR LIS +D ++ S S +S
Sbjct: 857 NNTDLVKIHKRE--RSSPTANESLT--SGKKRFKLISSTDMVKTEPGTSNSCSYGNTSSS 912
Query: 894 SSFIPITNKVKHEKPQISDSGSRIIAQGSAPSKVDGTTYR 933
S + E P SR S VD +R
Sbjct: 913 GSDSRCCSAKPAEYPLKEAPESRADFLREVRSVVDSDKFR 952
Score = 43 (20.2 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 466 PHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIV 509
P+ + + + + + P YLL+ R + IE L NTIV
Sbjct: 211 PYYASKELVSSADITFMPYNYLLDPKARKANKIE----LSNTIV 250
Score = 39 (18.8 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQYLMNNS 1036
GP+R L+ +K+ KY Q ++N S
Sbjct: 521 GPDREQLISNYKNRDNPKYISSLGQTILNVS 551
>UNIPROTKB|B3MSG8 [details] [associations]
symbol:GF20802 "Regulator of telomere elongation helicase 1
homolog" species:7217 "Drosophila ananassae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH902622 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001964274.1
EnsemblMetazoa:FBtr0125502 GeneID:6503494 KEGG:dan:Dana_GF20802
FlyBase:FBgn0097808 InParanoid:B3MSG8 Uniprot:B3MSG8
Length = 994
Score = 745 (267.3 bits), Expect = 2.2e-135, Sum P(2) = 2.2e-135
Identities = 147/320 (45%), Positives = 209/320 (65%)
Query: 410 GKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVI 469
GK ++ +++WCFNPG M++ +V S+ILTSGTL+P+ EL + +ENPH++
Sbjct: 448 GKVAKIINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIV 507
Query: 470 TSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
Q++ I+ GP L S+Y NRD+ +Y LG TI+N++R+VPDGLL+FFPSY ++
Sbjct: 508 DQSQVYVKIIGTGPDRQPLISNYTNRDNPKYISSLGQTILNVSRLVPDGLLVFFPSYPML 567
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSLFPLAIEDYMAKLKDTSTSGAVF 588
++C+ W+ + +W I KKP+ +EPR F +E++ ++D+ GA F
Sbjct: 568 NKCVDAWQASG------LWADIAS-KKPIFLEPRGKDQFTSTMEEFYQAIRDSK--GACF 618
Query: 589 FAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKL 648
AVCRGKVSEGLDFAD GRAV+ITG+PF + DPKV LKR YL+ +E +L
Sbjct: 619 MAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLE------SNRTRENQL 672
Query: 649 SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI-- 706
LSG +WYN +A+RAVNQA+GRVIRHR+DYGAI+ CD RF ++ Q+S WI+ H+
Sbjct: 673 --LSGNEWYNLEATRAVNQAIGRVIRHRNDYGAILLCDSRFKDAAQVQQLSKWIRGHLGD 730
Query: 707 --QCYSKFGDVVYTLTRFFR 724
QC S FG +V L +FF+
Sbjct: 731 RPQC-SPFGPIVRELRQFFK 749
Score = 602 (217.0 bits), Expect = 2.2e-135, Sum P(2) = 2.2e-135
Identities = 153/441 (34%), Positives = 224/441 (50%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW- 59
MP I GI V FPFE Y Q YMEKVIQ L++ N +LESPTGTGKTL LLC++LAW
Sbjct: 1 MPESLIAGIPVHFPFEPYPVQRAYMEKVIQCLKDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 60 --RKSLGSFSTLXXXXXXXXXXXXXXXXXXXXXXXK---------LPTILYTSRTHSQLR 108
R+S + K +P ++Y SRTHSQL
Sbjct: 61 RTRQSEHQQQMIKLDKGADLLGGGAGGGPELSDLAKTMGKANNWGVPKVIYASRTHSQLT 120
Query: 109 QVIQELKTSNY-RPKMVILGSREQLCIHREVSLLRGSAQN-NACRFLCKKGTNRRCNHHS 166
Q ++ELK + Y + V+LGSR+QLCIH EVS G++ N C+ T C
Sbjct: 121 QAMRELKRTAYSNMRSVVLGSRDQLCIHPEVSREVGNSNKVNMCKLRVHSKT---CTFQL 177
Query: 167 RVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWF 225
RV + K++P G +DIEDL+ +G+ CPY+ ++EL DI F PYNYL+DP
Sbjct: 178 RV-ESKKDHPDFRGPSIMDIEDLIKVGQKLKMCPYYASKELVPQADITFMPYNYLLDPKA 236
Query: 226 RKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDI--SSTRRGQ 283
RK +E N+I+I DEAHN+E IC ++AS + S + I + + + S + +
Sbjct: 237 RKANKIELGNTIVILDEAHNIEKICEESASVQIKSSDVAIAIEDVTHIMKAFASDSPQDM 296
Query: 284 SSDET--LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETA 341
+ DE D+ +L+ +LL LEK I V +++ G T P IYELL N T
Sbjct: 297 AGDEPKDFTIDDLMLLKEMLLDLEKAIDAVAVDNPIDGATYPASMIYELLGKANFTYGNV 356
Query: 342 YKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDK----GTAHSAYYRVHV 397
++ +++ + L Q +S++L I+F +K G H+++ +VHV
Sbjct: 357 ATIVALLDKLVQYLMVASQQQMSLRKGGSFTLLSDLLTIVFANKESVMGKVHASF-KVHV 415
Query: 398 READANAADVLKGKASRTLSW 418
+ ++ + A + W
Sbjct: 416 QVEESKQPQGKQAPAKQAGGW 436
Score = 42 (19.8 bits), Expect = 3.0e-55, Sum P(2) = 3.0e-55
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQYLMNNS 1036
GP+R PL+ + + KY Q ++N S
Sbjct: 520 GPDRQPLISNYTNRDNPKYISSLGQTILNVS 550
>UNIPROTKB|Q29FS3 [details] [associations]
symbol:GA17940 "Regulator of telomere elongation helicase 1
homolog" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH379065 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001354453.2
GeneID:4814338 KEGG:dpo:Dpse_GA17940 FlyBase:FBgn0077949
InParanoid:Q29FS3 Uniprot:Q29FS3
Length = 1009
Score = 751 (269.4 bits), Expect = 1.6e-134, Sum P(2) = 1.6e-134
Identities = 151/319 (47%), Positives = 210/319 (65%)
Query: 411 KASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
KA++ +++WCFNPG M++ +V S+ILTSGTL+P+ EL + +ENPH++
Sbjct: 450 KAAKIVNFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVD 509
Query: 471 SKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMD 530
Q++ I+ GP L S+++NRD+ +Y LG TI+N+ARIVPDGLL+FFPSY +++
Sbjct: 510 QSQVYVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLN 569
Query: 531 QCIACWKNTSHGNLTTIWERI-CKHKKPV-VEPRQSSLFPLAIEDYMAKLKDTSTSGAVF 588
+C+ W+ + +W I CK KP+ VEPR F +E++ ++D+ GAVF
Sbjct: 570 KCVDAWQASG------LWADISCK--KPIFVEPRGKDQFTSTMEEFYQAIRDSK--GAVF 619
Query: 589 FAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKL 648
AVCRGKVSEGLDFAD GRAV+ITG+PF + DPKV LKR YL+ KE +L
Sbjct: 620 MAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLETNRT------KENQL 673
Query: 649 SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQC 708
LSG++WYN A+RAVNQA+GRVIRHR+DYGAI+ CD RF S+ Q+S WI+ H+
Sbjct: 674 --LSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFQDASQVQQLSKWIRGHLGA 731
Query: 709 Y---SKFGDVVYTLTRFFR 724
S FG +V L +FF+
Sbjct: 732 RPQSSPFGPIVRELRQFFK 750
Score = 588 (212.0 bits), Expect = 1.6e-134, Sum P(2) = 1.6e-134
Identities = 152/437 (34%), Positives = 225/437 (51%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP I GI V FPFE Y+ Q YMEKVI L++ N +LESPTGTGKTL LLCA+LAW
Sbjct: 1 MPESVIAGIPVHFPFEPYNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWI 60
Query: 61 KSLGSFSTLXXXXXXXXXXXXXXXXXXXXXXXKL------------PTILYTSRTHSQLR 108
++ S +L P ++Y SRTHSQL
Sbjct: 61 RTRQSEHQQQMIKLKATSKEGGPGSGPGGDLSELAMTVGQANNWGVPKVIYASRTHSQLN 120
Query: 109 QVIQELKTSNY-RPKMVILGSREQLCIHREVSLLRGSAQN-NACRFLCKKGTNRRCNHHS 166
Q ++ELK + Y + V+LGSR+QLCIH EV +G++ N C+ T C
Sbjct: 121 QAMRELKRTAYANMRSVVLGSRDQLCIHPEVMKEQGNSNKVNLCKLRVHSKT---CTFQL 177
Query: 167 RVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWF 225
RV + K++P G +DIEDLV +G+ CPY+ ++EL DI F PYNYL+DP
Sbjct: 178 RV-ESKKDHPDFRGPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKA 236
Query: 226 RKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSS 285
RK +E N+I+I DEAHN+E IC ++AS + S + I + + + + ++ Q +
Sbjct: 237 RKANKIELGNTIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKVFTSGESQEA 296
Query: 286 --DET--LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETA 341
DE D+ +L+ +LL+LEK I V +++ G T P +YELL N T
Sbjct: 297 GGDEPKDFTLDDLTLLKEMLLELEKAIDAVVVDNPTDGTTYPASLMYELLGKANFTYGNC 356
Query: 342 YKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAY---YRVHVR 398
++ +++ + L Q+ +S++L I+F +K S ++VHV+
Sbjct: 357 ATIVALLDKLVQYLMVAS-QHMTIRKGGTFTMLSDLLTIVFANKENIMSKVHLSFKVHVQ 415
Query: 399 EADANAADVLKGKASRT 415
++N +GK+ T
Sbjct: 416 VEESNKQ---QGKSGAT 429
Score = 42 (19.8 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQYLMN 1034
GP+R L+ FK+ KY Q ++N
Sbjct: 521 GPDRQQLISNFKNRDNPKYISSLGQTILN 549
>UNIPROTKB|B4GU19 [details] [associations]
symbol:GL14463 "Regulator of telomere elongation helicase 1
homolog" species:7234 "Drosophila persimilis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 TIGRFAMs:TIGR00604 KO:K11136
OrthoDB:EOG4S4MX7 EMBL:CH479190 RefSeq:XP_002022098.1
EnsemblMetazoa:FBtr0180078 GeneID:6596883 KEGG:dpe:Dper_GL14463
FlyBase:FBgn0152068 Uniprot:B4GU19
Length = 1009
Score = 751 (269.4 bits), Expect = 2.0e-134, Sum P(2) = 2.0e-134
Identities = 151/319 (47%), Positives = 210/319 (65%)
Query: 411 KASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
KA++ +++WCFNPG M++ +V S+ILTSGTL+P+ EL + +ENPH++
Sbjct: 450 KAAKIVNFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVD 509
Query: 471 SKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMD 530
Q++ I+ GP L S+++NRD+ +Y LG TI+N+ARIVPDGLL+FFPSY +++
Sbjct: 510 QSQVYVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLN 569
Query: 531 QCIACWKNTSHGNLTTIWERI-CKHKKPV-VEPRQSSLFPLAIEDYMAKLKDTSTSGAVF 588
+C+ W+ + +W I CK KP+ VEPR F +E++ ++D+ GAVF
Sbjct: 570 KCVDAWQASG------LWADISCK--KPIFVEPRGKDQFTSTMEEFYQAIRDSK--GAVF 619
Query: 589 FAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKL 648
AVCRGKVSEGLDFAD GRAV+ITG+PF + DPKV LKR YL+ KE +L
Sbjct: 620 MAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLETNRT------KENQL 673
Query: 649 SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQC 708
LSG++WYN A+RAVNQA+GRVIRHR+DYGAI+ CD RF S+ Q+S WI+ H+
Sbjct: 674 --LSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFQDASQVQQLSKWIRGHLGA 731
Query: 709 Y---SKFGDVVYTLTRFFR 724
S FG +V L +FF+
Sbjct: 732 RPQSSPFGPIVRELRQFFK 750
Score = 587 (211.7 bits), Expect = 2.0e-134, Sum P(2) = 2.0e-134
Identities = 151/441 (34%), Positives = 222/441 (50%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP I GI V FPFE Y+ Q YMEKVI L++ N +LESPTGTGKTL LLCA+LAW
Sbjct: 1 MPESVIAGIPVHFPFEPYNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWI 60
Query: 61 KSLGSFSTLXXXXXXXXXXXXXXXXXXXXXXXKL------------PTILYTSRTHSQLR 108
++ S +L P ++Y SRTHSQL
Sbjct: 61 RTRQSEHQQQMIKLKATSKEGGPGSGPGGDLSELAMTVGQANNWGVPKVIYASRTHSQLN 120
Query: 109 QVIQELKTSNY-RPKMVILGSREQLCIHREVSLLRGSAQN-NACRFLCKKGTNRRCNHHS 166
Q ++ELK + Y + V+LGSR+QLCIH EV +G++ N C+ T C
Sbjct: 121 QAMRELKRTAYANMRSVVLGSRDQLCIHPEVMKEQGNSNKVNLCKLRVHSKT---CTFQL 177
Query: 167 RVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWF 225
RV + K++P G +DIEDLV +G+ CPY+ ++EL DI F PYNYL+DP
Sbjct: 178 RV-ESKKDHPDFRGPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKA 236
Query: 226 RKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSS 285
RK +E N+I+I DEAHN+E IC ++AS + S + I + + + + ++ Q +
Sbjct: 237 RKANKIELGNTIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKVFTSGESQEA 296
Query: 286 --DET--LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETA 341
DE D+ +L+ +LL+LEK I V +++ G T P +YELL N T
Sbjct: 297 GGDEPKDFTLDDLTLLKEMLLELEKAIDAVVVDNPTDGTTYPASLMYELLGKANFTYGNC 356
Query: 342 YKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAY---YRVHVR 398
++ +++ + L Q+ +S++L I+F +K S ++VHV+
Sbjct: 357 ATIVALLDKLVQYLMVAS-QHMTIRKGGTFTMLSDLLTIVFANKENIMSKVHLSFKVHVQ 415
Query: 399 EADANAADVLKGKASRTLSWW 419
++N G W
Sbjct: 416 VEESNKQQGKSGAIQGKQQGW 436
Score = 42 (19.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQYLMN 1034
GP+R L+ FK+ KY Q ++N
Sbjct: 521 GPDRQQLISNFKNRDNPKYISSLGQTILN 549
>UNIPROTKB|B4JNS2 [details] [associations]
symbol:GH24089 "Regulator of telomere elongation helicase 1
homolog" species:7222 "Drosophila grimshawi" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 EMBL:CH916371 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD
OrthoDB:EOG4S4MX7 RefSeq:XP_001992658.1 EnsemblMetazoa:FBtr0159503
GeneID:6565576 KEGG:dgr:Dgri_GH24089 FlyBase:FBgn0131545
InParanoid:B4JNS2 Uniprot:B4JNS2
Length = 986
Score = 741 (265.9 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 149/325 (45%), Positives = 205/325 (63%)
Query: 403 NAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLR 462
NAA K R +++WCFNPG M++ V S+ILTSGTL+P+ EL +
Sbjct: 443 NAASSAS-KTGRIINFWCFNPGFGMEQLLNTHVRSVILTSGTLAPLKPLIAELAIPVAQH 501
Query: 463 VENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIF 522
+ENPH++ Q++ I+ GP L S+Y+NRD+ +Y LG TI+N++RIVPDGLL+F
Sbjct: 502 LENPHIVNEAQVYVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVF 561
Query: 523 FPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTS 582
FPSY +++QC+ W+ + +W I K +EPR F +E++ ++D+
Sbjct: 562 FPSYPMLNQCVDAWQASG------LWADISSRKPIFLEPRGKDQFTSTMEEFYQAIRDSK 615
Query: 583 TSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGE 642
GA F AVCRGKVSEGLDFAD GRAV+ITG+PF + DPKV LKR YL+
Sbjct: 616 --GACFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLETNRT----- 668
Query: 643 YKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWI 702
+E +L LSG +WYN +A+RAVNQA+GRVIRHR+DYGAI+ CD RF S+ Q+S WI
Sbjct: 669 -RENQL--LSGNEWYNLEATRAVNQAIGRVIRHRNDYGAILLCDARFQDASQVQQLSKWI 725
Query: 703 QPHIQCY---SKFGDVVYTLTRFFR 724
+ H+ S FG +V L +FF+
Sbjct: 726 RNHLGARPQSSPFGPIVRELRQFFK 750
Score = 595 (214.5 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 155/440 (35%), Positives = 226/440 (51%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP I GI V FPFE YD Q YMEKVI L++ N +LESPTGTGKTL LLC+TL W
Sbjct: 1 MPENIIAGIPVHFPFEPYDVQRAYMEKVIICLRDGTNGVLESPTGTGKTLSLLCSTLGWI 60
Query: 61 KSLGSFSTLX---------XXXXXXXXXXXXXXXXXXXXXXK-----LPTILYTSRTHSQ 106
++ S L K +P ++Y SRTHSQ
Sbjct: 61 RTRQSEVQLNMQKLQHDQQTQLTGAAGAGAAMGSEIAAVIGKSNNWGVPKVIYASRTHSQ 120
Query: 107 LRQVIQELKTSNY-RPKMVILGSREQLCIHREVSLLRGSAQN-NACRFLCKKGTNRRCNH 164
L Q ++ELK + Y + V+LGSR+QLCIH +V +G++ N C+ K + C
Sbjct: 121 LTQAMRELKRTAYANMRAVVLGSRDQLCIHPDVMREQGNSNKVNMCKL---KVHAKSCTF 177
Query: 165 HSRVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDP 223
RV + K++P G +DIEDLV +G+ CPYF ++EL + DI F PYNYL+DP
Sbjct: 178 QLRV-ESKKDHPDFRGPSIMDIEDLVKVGQRLKMCPYFASKELVNSADITFMPYNYLLDP 236
Query: 224 WFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQ 283
RK +E N+I+I DE HN+E IC ++AS + S + I + + + I ++
Sbjct: 237 KARKANKIELSNAIVILDEGHNIEKICEESASVQIRSSDVAIAIEDVTHIMKIFTS--SS 294
Query: 284 SSDETLNPD---NFAI-----LRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLN 335
S +T PD +F I L+ +LL+LEK I V +++K G T P Y+YELL N
Sbjct: 295 DSQDTAGPDEPKDFTIDDLTLLKEMLLELEKAIDGVIVDNKADGATYPASYMYELLGKAN 354
Query: 336 ITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKG---TAHSAY 392
T ++ +++ + L Q+ ++++L I+F +KG + S
Sbjct: 355 FTHGNCATIVALLDKLVQYLMVAS-QHSMLRKGGSFMVLADLLNIVFANKGDIMSKVSCS 413
Query: 393 YRVHVREADANAADVLKGKA 412
++VH E + + KA
Sbjct: 414 FKVHA-EIEESKQSQTNNKA 432
Score = 41 (19.5 bits), Expect = 3.0e-54, Sum P(3) = 3.0e-54
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 920 QGSAPSKVDGTTYRIEAEIQSEKSKGSHSSA 950
+G SKV ++++ AEI+ K +++ A
Sbjct: 403 KGDIMSKVS-CSFKVHAEIEESKQSQTNNKA 432
Score = 39 (18.8 bits), Expect = 3.0e-54, Sum P(3) = 3.0e-54
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQYLMNNS 1036
GP+R L+ +K+ KY Q ++N S
Sbjct: 521 GPDREQLISNYKNRDNPKYISSLGQTILNVS 551
>UNIPROTKB|D6RA96 [details] [associations]
symbol:RTEL1-TNFRSF6B "Protein RTEL1-TNFRSF6B" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 EMBL:AL121845 EMBL:AL353715
HOGENOM:HOG000007558 ProteinModelPortal:D6RA96 SMR:D6RA96
Ensembl:ENST00000492259 HGNC:HGNC:44095 ArrayExpress:D6RA96
Bgee:D6RA96 Uniprot:D6RA96
Length = 785
Score = 744 (267.0 bits), Expect = 2.6e-130, Sum P(2) = 2.6e-130
Identities = 171/406 (42%), Positives = 240/406 (59%)
Query: 300 LLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDK 359
+LL+LE I V + + G TKPG YI+EL A+ IT +T ++D ++ + L
Sbjct: 349 ILLRLEGAIDAVELPGDDSGVTKPGSYIFELFAEAQITFQTKGCILDSLDQIIQHLAGRA 408
Query: 360 LQNKKSTTACRIESISNILKIIFRDKGTAHSAY-------YRVHVR-EAD----ANAADV 407
+ ++ I I+ + +G+ S Y+VH+ +A A +D
Sbjct: 409 GVFTNTAGLQKLADIIQIVFSVDPSEGSPGSPAGLGALQSYKVHIHPDAGHRRTAQRSDA 468
Query: 408 LKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRV 463
A+R LS+WCF+PG +M E R V S+ILTSGTL+P+ SFA E+++ FP+ +
Sbjct: 469 WSTTAARKRGKVLSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCL 528
Query: 464 ENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFF 523
ENPH+I QIW G+VP GP G L+S++ R S E LG + NIAR+VP GLLIFF
Sbjct: 529 ENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFF 588
Query: 524 PSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSLFPLAIEDYMAKLKDTS 582
PSY +M++ + W+ +L E + KP+ VEPR F I Y A++
Sbjct: 589 PSYPVMEKSLEFWRAR---DLARKMEAL----KPLFVEPRSKGSFSETISAYYARVAAPG 641
Query: 583 TSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGE 642
++GA F AVCRGK SEGLDF+D GR V++TG+P+ DP+V LK ++LD + + QGG
Sbjct: 642 STGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLD-EMKGQGGA 700
Query: 643 YKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDER 688
+ FLSG++WY QQASRAVNQA+GRVIRHR DYGA+ CD R
Sbjct: 701 GGQ----FLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHR 742
Score = 555 (200.4 bits), Expect = 2.6e-130, Sum P(2) = 2.6e-130
Identities = 117/272 (43%), Positives = 158/272 (58%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP + G+ V+FPF+ Y CQ YM KV++ LQ K N +LESPTGTGKTLCLLC TLAWR
Sbjct: 1 MPKIVLNGVTVDFPFQPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWR 60
Query: 61 KSL-GSFSTLXXX-----------XXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLR 108
+ L S +P I+Y SRTHSQL
Sbjct: 61 EHLRDGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLT 120
Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSR 167
QVI EL+ ++YRPK+ +LGSREQLCIH EV + Q + CR KK +R C+ ++
Sbjct: 121 QVINELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCR---KKVASRSCHFYNN 177
Query: 168 VADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRK 227
V + L +DIEDLV G CPY+++R L++ DI+F PYNYL+D R+
Sbjct: 178 VEEKSLEQ-ELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRR 236
Query: 228 GLGVEWKNSILIFDEAHNLEGICADAASFDLS 259
++ K +++IFDEAHN+E +C ++ASFDL+
Sbjct: 237 AHNIDLKGTVVIFDEAHNVEKMCEESASFDLT 268
>UNIPROTKB|B4I0K4 [details] [associations]
symbol:GM12432 "Regulator of telomere elongation helicase 1
homolog" species:7238 "Drosophila sechellia" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 EMBL:CH480819 GO:GO:0010569
TIGRFAMs:TIGR00604 KO:K11136 OrthoDB:EOG4S4MX7
RefSeq:XP_002036876.1 EnsemblMetazoa:FBtr0195417 GeneID:6612367
KEGG:dse:Dsec_GM12432 FlyBase:FBgn0167369 Uniprot:B4I0K4
Length = 966
Score = 756 (271.2 bits), Expect = 4.0e-128, Sum P(3) = 4.0e-128
Identities = 153/327 (46%), Positives = 212/327 (64%)
Query: 404 AADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRV 463
AA K ++ +++WCFNPG M++ +V S+ILTSGTL+P+ EL + +
Sbjct: 423 AAATGSSKVAKIINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHL 482
Query: 464 ENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFF 523
ENPH++ Q++ I+ GP L S+Y NRD+ +Y LG TI+N+ARIVPDGLL+FF
Sbjct: 483 ENPHIVDQSQVYVKIIGTGPDRQQLISNYANRDNPKYVSSLGQTILNVARIVPDGLLVFF 542
Query: 524 PSYYLMDQCIACWKNTSHGNLTTIWERI-CKHKKPV-VEPRQSSLFPLAIEDYMAKLKDT 581
PSY ++++C+ W+ + +W I CK KP+ +EPR F +E++ ++D+
Sbjct: 543 PSYPMLNKCVDAWQASG------LWADISCK--KPIFLEPRSKDQFTSTMEEFYQAIRDS 594
Query: 582 STSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGG 641
GAVF AVCRGKVSEGLDFAD GRAV+ITG+PF + DPKV LKR YL+
Sbjct: 595 K--GAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLE------AN 646
Query: 642 EYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLW 701
+E +L LSG++WYN A+RAVNQA+GRVIRHR+DYGAI+ CD RF S+ Q+S W
Sbjct: 647 RTRENQL--LSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQVQQLSKW 704
Query: 702 IQPHI----QCYSKFGDVVYTLTRFFR 724
I+ H+ QC S FG +V L +FF+
Sbjct: 705 IRGHLGDRPQC-SPFGPIVRELRQFFK 730
Score = 494 (179.0 bits), Expect = 4.0e-128, Sum P(3) = 4.0e-128
Identities = 158/486 (32%), Positives = 230/486 (47%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW- 59
MP I GI V FPFE Y Q YMEKVI L++ N +LESPTGTGKTL LLC++LAW
Sbjct: 1 MPESLIAGIPVHFPFEPYPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 60 --RKSLGSFSTLXXXXXXXXXXXXXXXXXXXXXXXK---------LPTILYTSRTHSQLR 108
R+S + K +P ++Y SRTHSQL
Sbjct: 61 RTRQSEHQMQMVKMEKADFSGIGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLT 120
Query: 109 QVIQELKTSNY-RPKMVILGSREQLCIHREVSL-LRGSAQNNACRFLCKKGTNRRCNHHS 166
Q ++ELK + Y + V+LGSR+QLCIH EV L S + N C+ T C+
Sbjct: 121 QAMRELKRTAYANMRSVVLGSRDQLCIHPEVMRELGNSNKTNMCKLRVHSKT---CSFQM 177
Query: 167 RVADYMKNNPHL-GDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWF 225
RV + K++P L G +DIEDLV +G+ CPYF +REL +
Sbjct: 178 RV-ESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELARA---------------- 220
Query: 226 RKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQ-- 283
K +E N+I+I DEAHN+E IC + AS + S + I + + + ++ Q
Sbjct: 221 NK---IELGNTIVILDEAHNIEKICEEYASVQIKSSDVAMTIEDITHIRQVFASGESQDM 277
Query: 284 SSDET--LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETA 341
+ DE D+ +L+ +LL+LEK I V +++ G T P +YELL N T
Sbjct: 278 AGDEPKDFTLDDLTLLKEMLLELEKAIDAVVVDNAVDGTTFPASMMYELLGKANFTYGNV 337
Query: 342 YKLIDIVEVAAE--LLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYY---RVH 396
+I +++ + L+ ++ +K T +S++L I+F +K S Y +VH
Sbjct: 338 ASIISLLDKLVQYLLVASQQMSIRKGGT---FTLLSDLLTIVFANKEDVMSKVYASFKVH 394
Query: 397 VREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELK 456
V ++ K + ++ W IA S +V II +P F E
Sbjct: 395 VLVEESKQGHG-KQQGAKQQGGWLGKGTIAAATGSS-KVAKII-NFWCFNP--GFGMEQL 449
Query: 457 LNFPLR 462
LN +R
Sbjct: 450 LNTQVR 455
Score = 43 (20.2 bits), Expect = 4.0e-128, Sum P(3) = 4.0e-128
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 763 PSSTPAVDQACYSLHEVKNRNTSSHSGEIVPANRSS 798
P ST V + Y L E SS ++ P +R++
Sbjct: 857 PESTSQVSKKRYKLVENIKVEPSSSQAKVAPEDRAA 892
>TAIR|locus:2030497 [details] [associations]
symbol:AT1G20720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 EMBL:CP002684 GO:GO:0005739 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 KO:K15362 OMA:EKELDDS IPI:IPI00524588
RefSeq:NP_173495.5 UniGene:At.51696 ProteinModelPortal:F4HUN4
SMR:F4HUN4 PRIDE:F4HUN4 EnsemblPlants:AT1G20720.1 GeneID:838662
KEGG:ath:AT1G20720 Uniprot:F4HUN4
Length = 1175
Score = 933 (333.5 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
Identities = 231/664 (34%), Positives = 346/664 (52%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRF 152
K+PTI Y SRTHSQ+ QVI+E + + YR M +L SR+ C +R V L ++ CR
Sbjct: 147 KIPTIYYASRTHSQITQVIREYRKTGYRVPMAVLASRKHYCTNRHV--LGKDNVDDECRL 204
Query: 153 LCKKGTNRRCNHH---SRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKT 209
L K N +C+ +++ + P +E DIEDLV +G+ CPYF + + +
Sbjct: 205 LLKDKANIQCSEFKNVNKITSHPSLQPRGHNEVHDIEDLVKVGKNVRGCPYFASWSMAEN 264
Query: 210 VDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISE 269
+VF PY+Y+++P R G+ V+ K +I+IFDEAHN+E I +A S +L L +E
Sbjct: 265 AQLVFCPYSYIVNPVIRAGVEVDLKGAIIIFDEAHNMEDIAREAGSINLEEDTLFKLQNE 324
Query: 270 AKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYE 329
+ + ++ Q E + L + + + + +A+ +T G
Sbjct: 325 LEQ-MSVAQPMIYQPLCEVVEG-----LISWIGRKKDSLAKRDFQHYFSSWT--GDKALR 376
Query: 330 LLADLNITQETAYKLIDIVEVAAELLQEDKLQNK----KSTTACRIESISNILKIIFRDK 385
L + NIT+E L++ A +E ++++ + +E + + L F
Sbjct: 377 ELEESNITRECFPILLECFTKAIRTSKEAEMESDMLYLSGISVLTLEELFSSLTYFFSRN 436
Query: 386 GTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTL 445
G+ H Y++ ++ + D G + T S WC NP + ++ + + + S+ILTSGTL
Sbjct: 437 GS-HILDYQLGLQRS-TKRGDP-SGTWTHTFSLWCMNPAVVFKDLADISL-SVILTSGTL 492
Query: 446 SPMDSFAQELKLNFPLRVENPHVIT-SKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQEL 504
SPM+SF+ EL + F +E PHVI + Q+WAG + GPS Y LN+SY+ D+ ++ L
Sbjct: 493 SPMNSFSSELGMQFGTSLEAPHVIDPNMQVWAGAISNGPSNYPLNASYKTADAYSFQDAL 552
Query: 505 GNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS 564
G ++ I IVP G L+FFPSY LM++ W+ T W R+C K VEPR
Sbjct: 553 GKSLEEICTIVPGGSLVFFPSYKLMEKLCMRWRETEQ------WSRLCLKKDLFVEPRGG 606
Query: 565 SL--FPLAIEDYMAKLK-----------------------DTSTSGAVFFAVCRGKVSEG 599
+ F ++ Y ++ D S GA F AVCRGKVSEG
Sbjct: 607 AQDEFDSVLKGYYDSIRGKNKIIGRNRRAKKAGPIKTETQDDSKKGAAFLAVCRGKVSEG 666
Query: 600 LDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQ 659
+DFAD RAV+I G+PF + D +V LK++Y D YK +K S L G +WY Q
Sbjct: 667 IDFADDNARAVIIVGIPFPNLHDIQVGLKKKYNDT--------YKSSK-SLLGGSEWYCQ 717
Query: 660 QASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTL 719
QA RA+NQA GR IRHR DYGAIIF DER+ ++ IS W++ I+ Y F + L
Sbjct: 718 QAYRALNQAAGRCIRHRFDYGAIIFLDERYKEQRNRASISKWLRQSIKVYDNFEASMEGL 777
Query: 720 TRFF 723
FF
Sbjct: 778 RSFF 781
Score = 173 (66.0 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
Identities = 34/67 (50%), Positives = 47/67 (70%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNK-----CNALLESPTGTGKTLCLLCATLA 58
Y+I G+ VEFP++ Y QL +M +VI +L C+ALLESPTGTGK+L LLC+ LA
Sbjct: 27 YQIGGLQVEFPYQPYGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSVLA 86
Query: 59 WRKSLGS 65
W+++ S
Sbjct: 87 WQQNYKS 93
Score = 41 (19.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 356 QEDKLQNKKSTTACRIESISN 376
+E+++QNK S ++E +N
Sbjct: 816 KENQIQNKSSQVEPKVEDYTN 836
>UNIPROTKB|A8WS58 [details] [associations]
symbol:rtel-1 "Regulator of telomere elongation helicase 1
homolog" species:6238 "Caenorhabditis briggsae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 EMBL:HE601486 RefSeq:XP_002639805.1
EnsemblMetazoa:CBG02256 GeneID:8581799 KEGG:cbr:CBG02256
CTD:8581799 WormBase:CBG02256 HOGENOM:HOG000154218 OMA:ENDIENQ
Uniprot:A8WS58
Length = 994
Score = 556 (200.8 bits), Expect = 2.8e-102, Sum P(2) = 2.8e-102
Identities = 161/546 (29%), Positives = 259/546 (47%)
Query: 319 GFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNIL 378
G G + E LA+ + + +D++ A L + + +ES+++ L
Sbjct: 356 GKASDGAILLETLANSGCDGNSVERFVDVLRDAISYLLSKNEEVSLTEKGDGMESVADFL 415
Query: 379 KIIFRDKGT-AHSAYYRVHVREAD----ANAAD-----VLKGKASRTLSWWCFNPGIAMQ 428
I+ +A H++ AD A A + K + ++CF I+M+
Sbjct: 416 LSIYSTHAQEVAAAVGDEHIKLADRVDPATVARNCKLYIRKDSGKLVIKYFCFQASISMR 475
Query: 429 EFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLL 488
V +++L SGTLSP+ +F + LNF +EN H + + IV G G L+
Sbjct: 476 MLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEHALKQVPVLTSIVTRGKHGGLV 535
Query: 489 NSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHG---NLT 545
S ++NR +IEY ++G +++ + P G+L+FF SY MD+ + WK T G +
Sbjct: 536 GS-FQNRKNIEYVSDVGESLIRVMETTPQGVLVFFSSYSQMDELVEVWKKTKRGASDSPE 594
Query: 546 TIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADH 605
T WE++ K KK VEPR Y + + GA AVCRGKVSEG+DF D
Sbjct: 595 TFWEKMEKTKKIAVEPRAKEQLAAVRLRYTQGVSEPH--GAALLAVCRGKVSEGIDFCDA 652
Query: 606 AGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAV 665
RAV+I G+P+ + D +V LK+ YLD G K+ S DWY +A RAV
Sbjct: 653 ESRAVIIVGIPYPPIHDERVVLKKMYLD---DLMGR--KDLTNEPQSSRDWYQMEAFRAV 707
Query: 666 NQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI-QCYSKFGDVVYTLTRFFR 724
NQA+GRV+RH++D+G ++ D R+A ++ W++ I +C S + RFF+
Sbjct: 708 NQAIGRVLRHKNDFGTVVLIDTRYAS-AKPEMFPKWLRNTISRCDSN--NCALKTARFFK 764
Query: 725 EE-RICGSTNLKLIKTEVSG--DVRELK------PVDLLDKISLEEV--PSSTPAVDQAC 773
E + ++ + IK + R++K P D + I+LE++ P++ +
Sbjct: 765 ERGHLIENSKSEYIKKQAKTCKSFRQVKSQSASNPKDDITDITLEDMFSPANMKIEKKEK 824
Query: 774 YSLHEVKNRNTSSHSGEIVPANRSSLSPYKGIWASE------LKNSSDLIQFEKKLLLSG 827
+K ++SS S +P N L K W E + +SSDL + + K G
Sbjct: 825 IEPRPIKY-DSSSSSVFSLPTNEDELKVKK--WEQENDSQTNVSSSSDLNKRKYKAETPG 881
Query: 828 RKSIQY 833
S Q+
Sbjct: 882 NSSGQH 887
Score = 539 (194.8 bits), Expect = 2.8e-102, Sum P(2) = 2.8e-102
Identities = 119/286 (41%), Positives = 163/286 (56%)
Query: 11 VEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLX 70
++FPFE Y+CQ ++M+ VI L K +A LESPTGTGKTL LLC+TLAW + L +
Sbjct: 19 IKFPFEPYECQRIFMKNVIDVLDMKLDAALESPTGTGKTLSLLCSTLAWVQKLKESKPMD 78
Query: 71 XXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKTSNYR-PKMVILGSR 129
+PTI Y SRTHSQL QV+ EL + Y+ K ILGSR
Sbjct: 79 FATWQSSGAGGAEKTEDKLKNSFIPTIFYASRTHSQLEQVVHELNRTEYKWVKTTILGSR 138
Query: 130 EQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSRVADYM---KNNPHLGD-EPID 184
E CI+++V ++ S Q + CR L K R C+++++ D + K N L E +D
Sbjct: 139 EHFCINQKVKKIKESNRQAHVCRGLVSK---RSCHYYNKF-DALTTDKANEILEKGEAMD 194
Query: 185 IEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAH 244
IED V IG CPYFM+R+ +T +++ PYNY+IDP R+ ++ KNSI+IFDEAH
Sbjct: 195 IEDFVKIGTQNSICPYFMSRQRSETAELILLPYNYIIDPKMRRRYKLDLKNSIVIFDEAH 254
Query: 245 NLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLN 290
NLE IC AS +LSS + CI E K + + + +E N
Sbjct: 255 NLESICESNASAELSSTSIALCIEELKKVLALLVEEEENAREEADN 300
Score = 49 (22.3 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 37/131 (28%), Positives = 60/131 (45%)
Query: 810 LKNS-SDLIQFEKKLLLSGRK----SIQYRDHEFIDLTSN---SSLHAKPRKEELIAPCS 861
++NS S+ I+ + K S R+ S + D+T S + K K+E I P
Sbjct: 770 IENSKSEYIKKQAKTCKSFRQVKSQSASNPKDDITDITLEDMFSPANMKIEKKEKIEPRP 829
Query: 862 TK----KRKV--LISESDQMQCVKKISEIASDAESSQPSSFIPITNKVKHEKPQISDSGS 915
K V L + D+++ VKK + +D++++ SS K K E P S SG
Sbjct: 830 IKYDSSSSSVFSLPTNEDELK-VKKWEQ-ENDSQTNVSSSSDLNKRKYKAETPGNS-SGQ 886
Query: 916 RIIAQGSAPSK 926
+++ GS P K
Sbjct: 887 HVVS-GSEPPK 896
>WB|WBGene00009124 [details] [associations]
symbol:rtel-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
EMBL:Z79754 KO:K11136 OMA:PFPPLKD HOGENOM:HOG000154218 EMBL:Z83224
PIR:T21356 RefSeq:NP_492769.1 ProteinModelPortal:Q93575 SMR:Q93575
IntAct:Q93575 MINT:MINT-227415 STRING:Q93575 PaxDb:Q93575
EnsemblMetazoa:F25H2.13.1 EnsemblMetazoa:F25H2.13.2 GeneID:172946
KEGG:cel:CELE_F25H2.13 UCSC:F25H2.13 CTD:172946 WormBase:F25H2.13
InParanoid:Q93575 NextBio:877635 Uniprot:Q93575
Length = 994
Score = 542 (195.9 bits), Expect = 6.1e-100, Sum P(2) = 6.1e-100
Identities = 119/290 (41%), Positives = 163/290 (56%)
Query: 9 IDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFST 68
+ V+FPFE Y+CQ ++M+ V+ L K +A LESPTGTGKTL LLC+TLAW +
Sbjct: 17 LSVKFPFEPYECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQRQKETKP 76
Query: 69 LXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKTSNYR-PKMVILG 127
L +PTI Y SRTHSQL QV+ EL + Y+ K ILG
Sbjct: 77 LDFATWQTSGAGGAEKTDEKLKSAYVPTIFYASRTHSQLEQVVHELNRTEYKWVKTTILG 136
Query: 128 SREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSR----VADYMKNNPHLGDEP 182
SRE CI+++V ++ S Q + CR L K R C+++++ D M G E
Sbjct: 137 SREHFCINQKVKKIKESNRQAHVCRGLVSK---RACHYYNKFDACTTDKMTEFLDKG-EA 192
Query: 183 IDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDE 242
+DIED V +G CPYFM+R+ +T +++ PYNY+IDP R+ ++ KNSI+IFDE
Sbjct: 193 MDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYNYIIDPKMRRRYKLDLKNSIVIFDE 252
Query: 243 AHNLEGICADAASFDLSSGLLTACISEAKNC----IDISSTRRGQSSDET 288
AHNLE IC AS +L+S + CI E K +D T R ++ ET
Sbjct: 253 AHNLESICESNASAELTSTSIALCIEELKKVLALLVDEEETARSEADAET 302
Score = 532 (192.3 bits), Expect = 6.1e-100, Sum P(2) = 6.1e-100
Identities = 137/438 (31%), Positives = 221/438 (50%)
Query: 319 GFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNIL 378
G G + E LA + +L+D++ A L + + +E +++ L
Sbjct: 356 GKASDGEILLETLAKAGFDANSVERLVDVLRDAISYLLSKNEEVALTEKGDGMEKVADFL 415
Query: 379 KIIF----RDKGTAHSAYY-----RVHVREADANAA-DVLKGKASR--TLSWWCFNPGIA 426
I+ +D A RV + N + K K + T+ ++CF I+
Sbjct: 416 LSIYSTHAQDVAAAVGEETVKLVDRVDPKTVARNCKLYIQKDKDNEKLTIKYFCFQASIS 475
Query: 427 MQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGY 486
M+ V +++L SGTLSP+ +F + LNF +EN H + + IV G G
Sbjct: 476 MRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEHALKQVPVLTSIVTRGKRGG 535
Query: 487 LLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNT--SHGNL 544
L S ++NR +++Y + ++ + ++P G+LIFF SY MD+ +A WK T S +
Sbjct: 536 LAGS-FQNRKNLDYVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVATWKTTKWSSNSN 594
Query: 545 TTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFA 603
+ WE++ K K+ VVEPR + L + + Y + + GA AVCRGKVSEG+DF
Sbjct: 595 ESFWEKMEKTKRVVVEPRAKEELAAIRLR-YTQGVSEQH--GAALLAVCRGKVSEGIDFC 651
Query: 604 DHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASR 663
D RAV+I G+P+ + D +V LK+ YLD G K+TK S +DWY +A R
Sbjct: 652 DAESRAVIIIGIPYPPIHDERVVLKKMYLD---DLMGR--KDTKSERQSSQDWYQMEAFR 706
Query: 664 AVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFF 723
AVNQA+GRV+RH+ D+G ++ D R+A ++ W++ I G + T +RFF
Sbjct: 707 AVNQAIGRVLRHKDDFGTVVLMDTRYAS-AKPEMFPKWLRNTISRSDTDGCALKT-SRFF 764
Query: 724 REE-RICGSTNLKLIKTE 740
+E + ++ + IK +
Sbjct: 765 KERGHLIENSKTEYIKKQ 782
Score = 42 (19.8 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 548 WERICKHKKPVVEPRQSSLF-----PLAIEDYMAKLK 579
W+ + + +P+ P ++ LF L ED M LK
Sbjct: 949 WDEVFQRFRPIFVPHKADLFIACSNVLRSEDKMKYLK 985
Score = 41 (19.5 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 540 SHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLK 579
S N+ + I K + P + P SS+F L + K+K
Sbjct: 814 SPANMKLEKKEITKLRPPQLIPSTSSVFSLPTNEDELKIK 853
>UNIPROTKB|Q93575 [details] [associations]
symbol:rtel-1 "Regulator of telomere elongation helicase 1
homolog" species:6239 "Caenorhabditis elegans" [GO:0005634
"nucleus" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=IGI] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:Z79754
KO:K11136 OMA:PFPPLKD HOGENOM:HOG000154218 EMBL:Z83224 PIR:T21356
RefSeq:NP_492769.1 ProteinModelPortal:Q93575 SMR:Q93575
IntAct:Q93575 MINT:MINT-227415 STRING:Q93575 PaxDb:Q93575
EnsemblMetazoa:F25H2.13.1 EnsemblMetazoa:F25H2.13.2 GeneID:172946
KEGG:cel:CELE_F25H2.13 UCSC:F25H2.13 CTD:172946 WormBase:F25H2.13
InParanoid:Q93575 NextBio:877635 Uniprot:Q93575
Length = 994
Score = 542 (195.9 bits), Expect = 6.1e-100, Sum P(2) = 6.1e-100
Identities = 119/290 (41%), Positives = 163/290 (56%)
Query: 9 IDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFST 68
+ V+FPFE Y+CQ ++M+ V+ L K +A LESPTGTGKTL LLC+TLAW +
Sbjct: 17 LSVKFPFEPYECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQRQKETKP 76
Query: 69 LXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKTSNYR-PKMVILG 127
L +PTI Y SRTHSQL QV+ EL + Y+ K ILG
Sbjct: 77 LDFATWQTSGAGGAEKTDEKLKSAYVPTIFYASRTHSQLEQVVHELNRTEYKWVKTTILG 136
Query: 128 SREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSR----VADYMKNNPHLGDEP 182
SRE CI+++V ++ S Q + CR L K R C+++++ D M G E
Sbjct: 137 SREHFCINQKVKKIKESNRQAHVCRGLVSK---RACHYYNKFDACTTDKMTEFLDKG-EA 192
Query: 183 IDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDE 242
+DIED V +G CPYFM+R+ +T +++ PYNY+IDP R+ ++ KNSI+IFDE
Sbjct: 193 MDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYNYIIDPKMRRRYKLDLKNSIVIFDE 252
Query: 243 AHNLEGICADAASFDLSSGLLTACISEAKNC----IDISSTRRGQSSDET 288
AHNLE IC AS +L+S + CI E K +D T R ++ ET
Sbjct: 253 AHNLESICESNASAELTSTSIALCIEELKKVLALLVDEEETARSEADAET 302
Score = 532 (192.3 bits), Expect = 6.1e-100, Sum P(2) = 6.1e-100
Identities = 137/438 (31%), Positives = 221/438 (50%)
Query: 319 GFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNIL 378
G G + E LA + +L+D++ A L + + +E +++ L
Sbjct: 356 GKASDGEILLETLAKAGFDANSVERLVDVLRDAISYLLSKNEEVALTEKGDGMEKVADFL 415
Query: 379 KIIF----RDKGTAHSAYY-----RVHVREADANAA-DVLKGKASR--TLSWWCFNPGIA 426
I+ +D A RV + N + K K + T+ ++CF I+
Sbjct: 416 LSIYSTHAQDVAAAVGEETVKLVDRVDPKTVARNCKLYIQKDKDNEKLTIKYFCFQASIS 475
Query: 427 MQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGY 486
M+ V +++L SGTLSP+ +F + LNF +EN H + + IV G G
Sbjct: 476 MRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEHALKQVPVLTSIVTRGKRGG 535
Query: 487 LLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNT--SHGNL 544
L S ++NR +++Y + ++ + ++P G+LIFF SY MD+ +A WK T S +
Sbjct: 536 LAGS-FQNRKNLDYVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVATWKTTKWSSNSN 594
Query: 545 TTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFA 603
+ WE++ K K+ VVEPR + L + + Y + + GA AVCRGKVSEG+DF
Sbjct: 595 ESFWEKMEKTKRVVVEPRAKEELAAIRLR-YTQGVSEQH--GAALLAVCRGKVSEGIDFC 651
Query: 604 DHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASR 663
D RAV+I G+P+ + D +V LK+ YLD G K+TK S +DWY +A R
Sbjct: 652 DAESRAVIIIGIPYPPIHDERVVLKKMYLD---DLMGR--KDTKSERQSSQDWYQMEAFR 706
Query: 664 AVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFF 723
AVNQA+GRV+RH+ D+G ++ D R+A ++ W++ I G + T +RFF
Sbjct: 707 AVNQAIGRVLRHKDDFGTVVLMDTRYAS-AKPEMFPKWLRNTISRSDTDGCALKT-SRFF 764
Query: 724 REE-RICGSTNLKLIKTE 740
+E + ++ + IK +
Sbjct: 765 KERGHLIENSKTEYIKKQ 782
Score = 42 (19.8 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 548 WERICKHKKPVVEPRQSSLF-----PLAIEDYMAKLK 579
W+ + + +P+ P ++ LF L ED M LK
Sbjct: 949 WDEVFQRFRPIFVPHKADLFIACSNVLRSEDKMKYLK 985
Score = 41 (19.5 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 540 SHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLK 579
S N+ + I K + P + P SS+F L + K+K
Sbjct: 814 SPANMKLEKKEITKLRPPQLIPSTSSVFSLPTNEDELKIK 853
>UNIPROTKB|Q3YK19 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0051539 GO:GO:0004003
Reactome:REACT_115612 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:DQ109581 IPI:IPI00593256
RefSeq:NP_001028230.1 UniGene:Gga.17801 ProteinModelPortal:Q3YK19
STRING:Q3YK19 Ensembl:ENSGALT00000039225 GeneID:417642
KEGG:gga:417642 CTD:83990 HOGENOM:HOG000068083 HOVERGEN:HBG081519
InParanoid:Q3YK19 KO:K15362 OMA:GYETSCK OrthoDB:EOG4J6RQ8
NextBio:20820915 ArrayExpress:Q3YK19 Uniprot:Q3YK19
Length = 1252
Score = 568 (205.0 bits), Expect = 2.1e-92, Sum P(4) = 2.1e-92
Identities = 157/515 (30%), Positives = 264/515 (51%)
Query: 416 LSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIW 475
L++WC NP +A + + +V +++LTSGTLSPMDSF+ EL + F +++E HVI + Q+W
Sbjct: 600 LNFWCLNPAVAFSDLN--DVRTVVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVW 657
Query: 476 AGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIAC 535
G + GP+G L +++++ ++ E++ E+G ++++ + V G+L F PSY L+D+
Sbjct: 658 VGTIGTGPNGRKLCATFQHTETFEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDKLKDR 717
Query: 536 WKNTSHGNLTTIWERICKHKKPVVEPR--QSSLFPLAIEDYMAKLK-DTSTSGAVFFAVC 592
W +T +W + K + EP+ S F ++ Y +K GA+ AVC
Sbjct: 718 WIHTG------LWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAIKFKGEKDGALLIAVC 771
Query: 593 RGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLS 652
RGKVSEGLDF D RAV+ G+PF + D +V LKR+Y D ++K T+ L
Sbjct: 772 RGKVSEGLDFCDENARAVITIGIPFPNVKDLQVELKRKYND--------QHKTTR-GLLP 822
Query: 653 GEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRK--SQISLWIQPHIQCYS 710
G WY QA RA+NQA+GR IRHR D+GA+I D+RF + K + +S WI+ +Q +
Sbjct: 823 GSQWYEIQAYRALNQALGRCIRHRSDWGALILVDDRFRNNPNKYITGLSKWIRQQVQHHE 882
Query: 711 KFGDVVYTLTRFF-REER-I-----CGST--NLKLIKTEVSGDVRELKPVDLLDKISLEE 761
FG + +L F R ++ I C + ++ L E S ++ + L + ++
Sbjct: 883 NFGSALESLHAFAERNQKGIDFSSQCSNEVFHVPLNSKEPSSASQQEATIHLSPDVPVKS 942
Query: 762 VPSSTPAVDQACYSLHEVKNRNTSSHSGEIVPANRSSLSPYKGIWASELKNSSDLIQFEK 821
S +++ + ++ G+ V S + GI + +S+ K
Sbjct: 943 EEQSFVPETHLTTTINSINPGPSNQPGGQKVDVESCS---HNGIQRRKHMDSTPRRPANK 999
Query: 822 KLLLSGRKSIQY-RDHE-FIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQCVK 879
S R + + ++H F LTS P ++ S+K+RK + S S+ + V
Sbjct: 1000 TEKKSDRTNSDFMKEHCCFKPLTSTPL----PVATNCVSTASSKQRKNVNSASELIGGVN 1055
Query: 880 KI-SEIASDAESSQPSSFIPITN-KVKHEKPQISD 912
+ S + + S P S + TN VK + +++
Sbjct: 1056 QCQSSFTLEHKPSIPESHLETTNFSVKSTEAPVAE 1090
Score = 307 (113.1 bits), Expect = 2.1e-92, Sum P(4) = 2.1e-92
Identities = 68/181 (37%), Positives = 96/181 (53%)
Query: 94 LPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACRF 152
+P I + +RTH Q+ Q+ +ELK + Y M IL SR+ CIH VS S +N C
Sbjct: 252 IPKIFFGTRTHKQIAQITRELKRTAYSGVPMTILSSRDYTCIHPVVSS-SNSNRNELCVE 310
Query: 153 LCKKGTNRRCNH----HSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQK 208
L + + C + H Y + H + DIEDLV++G+ CPYF REL
Sbjct: 311 LLEGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIEDLVSLGKKLRACPYFAARELMV 370
Query: 209 TVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACIS 268
DIVF PYNYL+DP R+ + + K ++I DEAHN+E +A S+ ++ L A
Sbjct: 371 GADIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDSAREAVSYSVTESQLNAARE 430
Query: 269 E 269
E
Sbjct: 431 E 431
Score = 164 (62.8 bits), Expect = 2.1e-92, Sum P(4) = 2.1e-92
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ + FP +AY QL M +++ L N+ + LLESPTG+GK+L LLC+ L+W++SL
Sbjct: 8 YTIGGVKIMFPCKAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSALSWQQSL 67
Query: 64 GSFSTL 69
S L
Sbjct: 68 YEKSLL 73
Score = 57 (25.1 bits), Expect = 2.1e-92, Sum P(4) = 2.1e-92
Identities = 24/99 (24%), Positives = 43/99 (43%)
Query: 869 ISESDQMQCVKKISEIASDAESSQPSS--FIPITNKVKHEKPQISD-----SGSRIIAQG 921
IS D+ + + E+ DAES + P N+++ KP ++D S S+ +++
Sbjct: 1120 ISAEDEDESLYFTPELYDDAESEEQEMRPLDPDENQIECGKPTVADDLFVISTSKTLSEP 1179
Query: 922 SAPSKVDGTTYRIEAEIQSEKSKGSHSSAPPC-GGEETK 959
DG + + S+ SK S + GEE +
Sbjct: 1180 KEMINDDGRNTSLHGTMLSDISKNSTVNIEKMTNGEEAE 1218
Score = 38 (18.4 bits), Expect = 2.6e-64, Sum P(4) = 2.6e-64
Identities = 20/88 (22%), Positives = 36/88 (40%)
Query: 234 KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDN 293
KN LI H+ + + + SS +C S + D +T++ + D+T P
Sbjct: 199 KNGELI---VHSEKSVKNTSPQTLFSSCTECSCSSGKETRKDSGNTKKKANGDQTFIPKI 255
Query: 294 FAILRALLLKLEKRIAEVPINSKELGFT 321
F R K+IA++ K ++
Sbjct: 256 FFGTRT-----HKQIAQITRELKRTAYS 278
Score = 38 (18.4 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 28/136 (20%), Positives = 60/136 (44%)
Query: 747 ELKPVDLLDKISLEEVPSSTPAVDQACYSLHEVKNRNTSSHSGEIVPAN--RSSLSPYKG 804
EL V ++S+ E+ S D++ Y E+ + + S E+ P + + + K
Sbjct: 1105 ELPSVGGRPELSVLEI--SAEDEDESLYFTPELYD-DAESEEQEMRPLDPDENQIECGKP 1161
Query: 805 IWASELK--NSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKP----RKEELIA 858
A +L ++S + K+++ ++ D++ NS+++ + + E +
Sbjct: 1162 TVADDLFVISTSKTLSEPKEMINDDGRNTSLHGTMLSDISKNSTVNIEKMTNGEEAEQVE 1221
Query: 859 P--CSTKKRKVLISES 872
TKKRK+ +S S
Sbjct: 1222 SQEVDTKKRKISLSRS 1237
>UNIPROTKB|A4K436 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0000723 "telomere maintenance" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0000723
GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000007558 KO:K11136 EMBL:DQ323152 EMBL:DQ323153
EMBL:DQ420360 EMBL:DQ420361 EMBL:DQ420362 EMBL:DQ420363
IPI:IPI00840795 IPI:IPI00905335 IPI:IPI00930023 IPI:IPI00930030
IPI:IPI00930035 RefSeq:NP_001091044.1 UniGene:Bt.6256
ProteinModelPortal:A4K436 GeneID:505721 KEGG:bta:505721 CTD:51750
InParanoid:A4K434 OrthoDB:EOG412M4Q NextBio:20867282 Uniprot:A4K436
Length = 1216
Score = 878 (314.1 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
Identities = 191/453 (42%), Positives = 273/453 (60%)
Query: 289 LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIV 348
L P++ A L+ +LL+LE I V + G TKPG YI+EL A+ IT +T ++D +
Sbjct: 309 LEPEDLAKLKMILLRLEGAIDAVELPGDNSGVTKPGSYIFELFAEAQITFQTKGCILDSL 368
Query: 349 E-VAAELLQEDKLQNKKSTTACRIESISNILKIIFR--DKGTA---HSAYYRVHVR-EAD 401
+ + L L + ++ I + + D G S Y+VH+ +A
Sbjct: 369 DQLIQHLAGRAGLFTNTAGLQKLVDIIQIVFSVDSAEGDPGPMVGLASQSYKVHIHLDAG 428
Query: 402 ----ANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQ 453
A +DV A+R LS+WCF+PG +M+E R V ++ILTSGTL+PM SF+
Sbjct: 429 HRRTAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSL 488
Query: 454 ELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIAR 513
E+++ FP+ +ENPHVI QIW G++P GP G L+S++ R S E LG + NI+R
Sbjct: 489 EMQIPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISR 548
Query: 514 IVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSLFPLAIE 572
+VP GLL+FFPSY +M++ + W+ + R + +KP+ VEPR F +E
Sbjct: 549 VVPHGLLVFFPSYPVMEKSLEFWRARD-------FTRKLEVRKPLFVEPRSKGGFSEVME 601
Query: 573 DYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYL 632
+ A++ +SGA+F AVCRGK SEGLDFAD GR V++TG+P+ DP+V LK ++L
Sbjct: 602 AFYARVAAPESSGAIFLAVCRGKASEGLDFADVNGRGVIVTGLPYPPRMDPRVLLKMQFL 661
Query: 633 D-LQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAH 691
D ++AQS G FLSG DWY QQASRAVNQA+GRVIRHRHDYGA+ CD RFAH
Sbjct: 662 DEMKAQSGAGG------QFLSGHDWYRQQASRAVNQAIGRVIRHRHDYGAVFLCDHRFAH 715
Query: 692 PSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
++Q+ W++PH++ Y FG V+ + +FFR
Sbjct: 716 ADTRAQLPSWVRPHVKVYDSFGHVIRDVAQFFR 748
Score = 648 (233.2 bits), Expect = 8.7e-62, Sum P(2) = 8.7e-62
Identities = 150/406 (36%), Positives = 223/406 (54%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP ++G+ V+FPF+ Y CQ YM KV++ LQ K N +LESPTGTGKTLCLLC+TLAWR
Sbjct: 1 MPKITLKGVTVDFPFQPYKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWR 60
Query: 61 KSLG-----------SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQ 109
+ L + L +P I+Y SRTHSQL Q
Sbjct: 61 EHLRDAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQ 120
Query: 110 VIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSRV 168
VI EL+ ++YRP++ +LGSREQLCIH EV + Q + CR +K +R C+ ++ V
Sbjct: 121 VISELRNTSYRPRVCVLGSREQLCIHPEVKKQESNHMQVHLCR---RKVASRSCHFYNNV 177
Query: 169 ADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKG 228
+ L +DIEDLV G CPY+++R L++ DI+F PYNYL+D R+
Sbjct: 178 EEKSLEQ-ELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRA 236
Query: 229 LGVEWKNSILIFDEAHNLEGICADAASFDLSS-------GLLTACISEAKNCIDISSTRR 281
G++ K +++IFDEAHN+E +C +AASFDL+ ++ + E +
Sbjct: 237 HGIDLKGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRVLEERTKVAQQAELHP 296
Query: 282 GQSSDET-----LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNI 336
S+D L P++ A L+ +LL+LE I V + G TKPG YI+EL A+ I
Sbjct: 297 EFSADSARSGLNLEPEDLAKLKMILLRLEGAIDAVELPGDNSGVTKPGSYIFELFAEAQI 356
Query: 337 TQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
T +T ++D ++ +L+Q + T ++ + +I++I+F
Sbjct: 357 TFQTKGCILDSLD---QLIQHLAGRAGLFTNTAGLQKLVDIIQIVF 399
Score = 60 (26.2 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 961 SAFLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLFAG-PERLPLLRRFKDY 1019
SA+L V+ L A Y + + V+ +A L PE LPLL+RF +
Sbjct: 1064 SAYLADVRRTLGAAGYSQLLT-ALTTYKQDDDFEKVVAVVAALTTEKPEDLPLLQRFGMF 1122
Query: 1020 VPAKYHPLYEQYLMNNS 1036
V + + Q ++ S
Sbjct: 1123 VRPHHKQRFRQMCVDLS 1139
Score = 56 (24.8 bits), Expect = 8.9e-92, Sum P(2) = 8.9e-92
Identities = 18/85 (21%), Positives = 37/85 (43%)
Query: 948 SSAPPCGGEET-KGSAFLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLFA- 1005
SS P +T + F++ V++ LS + F + ++ ++ LFA
Sbjct: 886 SSEVPAASTDTGRAKLFMVAVKQALSQASFDTFTQ-ALRDYKSSDDLEALVARLSPLFAE 944
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQ 1030
P++ LL+ F +V + +E+
Sbjct: 945 DPKKHSLLQGFYQFVRPHHKQQFEE 969
>UNIPROTKB|E1C1X9 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:AADN02025783
IPI:IPI00820128 Ensembl:ENSGALT00000008466 ArrayExpress:E1C1X9
Uniprot:E1C1X9
Length = 1249
Score = 563 (203.2 bits), Expect = 8.1e-92, Sum P(4) = 8.1e-92
Identities = 158/517 (30%), Positives = 263/517 (50%)
Query: 416 LSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIW 475
L++WC NP +A + + +V +++LTSGTLSPMDSF+ EL + F +++E HVI + Q+W
Sbjct: 600 LNFWCLNPAVAFSDLN--DVRTVVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVW 657
Query: 476 AGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIAC 535
G + GP+G L +++++ ++ E++ E+G ++++ + V G+L F PSY L+D+
Sbjct: 658 VGTIGTGPNGRKLCATFQHTETFEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDKLKDR 717
Query: 536 WKNTSHGNLTTIWERICKHKKPVVEPR--QSSLFPLAIEDYMAKLK-DTSTSGAVFFAVC 592
W +T +W + K + EP+ S F ++ Y +K GA+ AVC
Sbjct: 718 WIHTG------LWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAIKFKGEKDGALLIAVC 771
Query: 593 RGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLS 652
RGKVSEGLDF D RAV+ G+PF + D +V LKR+Y D ++K T+ L
Sbjct: 772 RGKVSEGLDFCDENARAVITIGIPFPNVKDLQVELKRKYND--------QHKTTR-GLLP 822
Query: 653 GEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRK--SQISLWIQPHIQCYS 710
G WY QA RA+NQA+GR IRHR D+GA+I D+RF + K + +S WI+ +Q +
Sbjct: 823 GSQWYEIQAYRALNQALGRCIRHRSDWGALILVDDRFRNNPNKYITGLSKWIRQQVQHHE 882
Query: 711 KFGDVVYTLTRFF-REER-I-----CGST--NLKLIKTEVSGDVRELKPVDLLDKISLEE 761
FG + +L F R ++ I C + ++ L E S ++ + L + ++
Sbjct: 883 NFGSALESLHAFAERNQKGIDFSSQCSNEVFHVPLNSKEPSSASQQEATIHLSPDVPVKS 942
Query: 762 VPSSTPAVDQACYSLHEVKN--RNTSSHSGEIVPANRSSLSPYKGIWASELKNSSDLIQF 819
S +++ + N G+ V S + GI + +S+
Sbjct: 943 EEQSFVPETHLTTTINSINPGPSNQPDRCGQKVDVESCS---HNGIQRRKHMDSTPRRPA 999
Query: 820 EKKLLLSGRKSIQY-RDHE-FIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQC 877
K S R + + ++H F LTS P ++ S+K+RK + S S+ +
Sbjct: 1000 NKTEKKSDRTNSDFMKEHCCFKPLTSTPL----PVATNCVSTASSKQRKNVNSASELIGG 1055
Query: 878 VKKI-SEIASDAESSQPSSFIPITN-KVKHEKPQISD 912
V + S + + S P S + TN VK + +++
Sbjct: 1056 VNQCQSSFTLEHKPSIPESHLETTNFSVKSTEAPVAE 1092
Score = 307 (113.1 bits), Expect = 8.1e-92, Sum P(4) = 8.1e-92
Identities = 68/181 (37%), Positives = 96/181 (53%)
Query: 94 LPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACRF 152
+P I + +RTH Q+ Q+ +ELK + Y M IL SR+ CIH VS S +N C
Sbjct: 252 IPKIFFGTRTHKQIAQITRELKRTAYSGVPMTILSSRDYTCIHPVVSS-SNSNRNELCVE 310
Query: 153 LCKKGTNRRCNH----HSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQK 208
L + + C + H Y + H + DIEDLV++G+ CPYF REL
Sbjct: 311 LLEGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIEDLVSLGKKLRACPYFAARELMV 370
Query: 209 TVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACIS 268
DIVF PYNYL+DP R+ + + K ++I DEAHN+E +A S+ ++ L A
Sbjct: 371 GADIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDSAREAVSYSVTESQLNAARE 430
Query: 269 E 269
E
Sbjct: 431 E 431
Score = 164 (62.8 bits), Expect = 8.1e-92, Sum P(4) = 8.1e-92
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ + FP +AY QL M +++ L N+ + LLESPTG+GK+L LLC+ L+W++SL
Sbjct: 8 YTIGGVKIMFPCKAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSALSWQQSL 67
Query: 64 GSFSTL 69
S L
Sbjct: 68 YEKSLL 73
Score = 57 (25.1 bits), Expect = 8.1e-92, Sum P(4) = 8.1e-92
Identities = 24/99 (24%), Positives = 43/99 (43%)
Query: 869 ISESDQMQCVKKISEIASDAESSQPSS--FIPITNKVKHEKPQISD-----SGSRIIAQG 921
IS D+ + + E+ DAES + P N+++ KP ++D S S+ +++
Sbjct: 1122 ISAEDEDESLYFTPELYDDAESEEQEMRPLDPDENQIECGKPTVADDLFVISTSKTLSEP 1181
Query: 922 SAPSKVDGTTYRIEAEIQSEKSKGSHSSAPPC-GGEETK 959
DG + + S+ SK S + GEE +
Sbjct: 1182 KEMINDDGRNTSLHGTMLSDISKNSTVNIEKMTNGEEAE 1220
Score = 38 (18.4 bits), Expect = 9.8e-64, Sum P(4) = 9.8e-64
Identities = 20/88 (22%), Positives = 36/88 (40%)
Query: 234 KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDN 293
KN LI H+ + + + SS +C S + D +T++ + D+T P
Sbjct: 199 KNGELI---VHSEKSVKNTSPQTLFSSCTECSCSSGKETRKDSGNTKKKANGDQTFIPKI 255
Query: 294 FAILRALLLKLEKRIAEVPINSKELGFT 321
F R K+IA++ K ++
Sbjct: 256 FFGTRT-----HKQIAQITRELKRTAYS 278
Score = 38 (18.4 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 28/136 (20%), Positives = 60/136 (44%)
Query: 747 ELKPVDLLDKISLEEVPSSTPAVDQACYSLHEVKNRNTSSHSGEIVPAN--RSSLSPYKG 804
EL V ++S+ E+ S D++ Y E+ + + S E+ P + + + K
Sbjct: 1107 ELPSVGGRPELSVLEI--SAEDEDESLYFTPELYD-DAESEEQEMRPLDPDENQIECGKP 1163
Query: 805 IWASELK--NSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKP----RKEELIA 858
A +L ++S + K+++ ++ D++ NS+++ + + E +
Sbjct: 1164 TVADDLFVISTSKTLSEPKEMINDDGRNTSLHGTMLSDISKNSTVNIEKMTNGEEAEQVE 1223
Query: 859 P--CSTKKRKVLISES 872
TKKRK+ +S S
Sbjct: 1224 SQEVDTKKRKISLSRS 1239
>UNIPROTKB|J3QSE8 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
ProteinModelPortal:J3QSE8 Ensembl:ENST00000577598 Uniprot:J3QSE8
Length = 994
Score = 569 (205.4 bits), Expect = 2.1e-89, Sum P(3) = 2.1e-89
Identities = 125/347 (36%), Positives = 203/347 (58%)
Query: 412 ASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITS 471
A L++WC NP +A + + +V +I+LTSGTLSPM SF+ EL + F +++E H+I +
Sbjct: 585 AVHVLNFWCLNPAVAFSDING-KVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKN 643
Query: 472 KQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQ 531
Q+W G + GP G L ++++N ++ E++ E+G ++++ + V G+L F PSY L+++
Sbjct: 644 SQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEK 703
Query: 532 CIACWKNTSHGNLTTIWERICKHKKPVVEPR--QSSLFPLAIEDYMAKLK-DTSTSGAVF 588
W +T +W + K +VEP+ + + F ++ Y +K GA+
Sbjct: 704 LKERWLSTG------LWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALL 757
Query: 589 FAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKL 648
AVCRGKVSEGLDF+D RAV+ G+PF + D +V LKR+Y D ++ +G
Sbjct: 758 VAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRG-------- 809
Query: 649 SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAH-PSRK-SQISLWIQPHI 706
L G WY QA RA+NQA+GR IRHR+D+GA+I D+RF + PSR S +S W++ I
Sbjct: 810 -LLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQI 868
Query: 707 QCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDL 753
Q +S F + +L F ++ + + ++K +T + + L+ L
Sbjct: 869 QHHSTFESALESLAEFSKKHQKVLNVSIK-DRTNIQDNESTLEVTSL 914
Score = 277 (102.6 bits), Expect = 2.1e-89, Sum P(3) = 2.1e-89
Identities = 59/172 (34%), Positives = 96/172 (55%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K+P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV + +N C
Sbjct: 242 KIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEV--VGNFNRNEKCM 299
Query: 152 FLCKKGTNRRCN-HHS--RVADYMKNNPHLGD-EPIDIEDLVNIGRTFGPCPYFMTRELQ 207
L + C +H +++D G + DIE+LV++G+ CPY+ REL
Sbjct: 300 ELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELI 359
Query: 208 KTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLS 259
+ DI+F PYNYL+D R+ + + K ++I DEAHN+E ++AS+ ++
Sbjct: 360 QDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVT 411
Score = 169 (64.5 bits), Expect = 2.1e-89, Sum P(3) = 2.1e-89
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ + FP++AY QL M +++ L +K + LLESPTG+GK+L LLC+ LAW++SL
Sbjct: 8 YTIGGVKIYFPYKAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSL 67
Score = 48 (22.0 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 843 SNSSLHAKPRKEELIAPCSTKKR-KVLISESDQMQCVKK 880
++S+ P K L A S KK+ + E+D Q KK
Sbjct: 121 TSSTCQDSPEKTTLAAKLSAKKQASIYRDENDDFQVEKK 159
Score = 38 (18.4 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 514 IVPDGLLIFFPSYYLMD 530
++ D +IF P YL+D
Sbjct: 358 LIQDADIIFCPYNYLLD 374
Score = 37 (18.1 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 19/89 (21%), Positives = 41/89 (46%)
Query: 801 PYKGIWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPC 860
PY + ++++ S DL E+ ++L +I+ E S + + + ++EL +
Sbjct: 368 PYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASY-SVTEVQLRFARDELDSMV 426
Query: 861 STKKRKVLISESDQMQCVKKISEIASDAE 889
+ RK E + C I+ + ++AE
Sbjct: 427 NNNIRKK-DHEPLRAVCCSLINWLEANAE 454
>DICTYBASE|DDB_G0286621 [details] [associations]
symbol:fncJ "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002464
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 dictyBase:DDB_G0286621 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677
EMBL:AAFI02000089 GO:GO:0004003 GO:GO:0006302 InterPro:IPR014001
SMART:SM00487 eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K15362
RefSeq:XP_637574.1 ProteinModelPortal:Q54LI7
EnsemblProtists:DDB0232367 GeneID:8625714 KEGG:ddi:DDB_G0286621
InParanoid:Q54LI7 Uniprot:Q54LI7
Length = 1078
Score = 502 (181.8 bits), Expect = 4.7e-89, Sum P(3) = 4.7e-89
Identities = 115/360 (31%), Positives = 194/360 (53%)
Query: 371 IESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSW------WCFNPG 424
+ES + +I+++KG YR+ +++A A + K K+++ W W +P
Sbjct: 735 LESFEKVTAMIYQNKGWIED--YRLVLQKASAFQTNGGK-KSNQGTKWNYQFGIWAMSPR 791
Query: 425 IAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT-SKQIWAGIVPVGP 483
IA + S++LTSGTLSP+ SF EL FP+ E ++ +++ W G + G
Sbjct: 792 IAFSSLVQA-TRSVVLTSGTLSPLYSFPMELAAKFPISAEMGNLPDIAQRAWIGTLSHGV 850
Query: 484 SGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGN 543
G L ++ + ++++ LG TI+ ++P G+L FFPSY +++ ++ W T
Sbjct: 851 KGTKLICTHGPSEGLDFQDSLGETILQHIELIPSGVLCFFPSYGFLEKLLSRWDETG--- 907
Query: 544 LTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFA 603
I ++I K+ EP+ F +++Y ++K GA+ FAVCRGKVSEG+DF+
Sbjct: 908 ---ILKKINAKKRYFYEPKNQREFIETLDNYREEIKQRPNKGAILFAVCRGKVSEGIDFS 964
Query: 604 DHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASR 663
D R V++ G+P+ ++ D ++ LK+E+ D +G +SG DWY QA R
Sbjct: 965 DEYARGVIVVGIPYPSLVDLRIVLKKEHND--TNKKG----------ISGGDWYKLQAYR 1012
Query: 664 AVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFF 723
A+NQA+GR IRH++DYG+I+ DERF + +S W + I+ + +L F+
Sbjct: 1013 ALNQALGRCIRHKNDYGSILLIDERFTQMGNWNSLSKWTRSCIKNNRNLNTSLSSLKLFY 1072
Score = 347 (127.2 bits), Expect = 4.7e-89, Sum P(3) = 4.7e-89
Identities = 90/259 (34%), Positives = 139/259 (53%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQN-NACR 151
K PTI + SRTHSQ++Q+ ELK + YRP MV+L SR+Q CI+ LL+ + C+
Sbjct: 425 KSPTIFFCSRTHSQIKQLTGELKKTPYRPNMVVLASRDQYCIN---PLLKDVPKKLEKCK 481
Query: 152 -FLCKKGTN-RRCNHHSRVADYMKNNPHLGD---EPIDIEDLVNIGRTFGPCPYFMTREL 206
L G ++ + +A K++ LG E DIEDL+ G+ CPYF +R++
Sbjct: 482 KLLLDHGCRFKKTEQQTSLA---KSSDFLGGGKKEVWDIEDLMEAGQAHSECPYFASRDM 538
Query: 207 QKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTA- 265
+ D++F PYNYLIDP RK + SI+IFDEAHN+E + +SFD S L
Sbjct: 539 IEKADLIFCPYNYLIDPQIRKSFADKVAGSIVIFDEAHNIEDALMETSSFDSSLEELNEH 598
Query: 266 CISEAKNCIDISSTRRGQSSDETLNPDN-FAILRALLLKLEKRIAEV-PINSKELGFTKP 323
C K+CI S T S+++ L + +L +++ + K++ + PI+ ++
Sbjct: 599 CYQNFKDCIMNSRTMSMLSNEKALAIHYCYKLLESIIAWINKKVQTLKPIDFEKHQNVWK 658
Query: 324 GPYIYELLADLNITQETAY 342
G I + + + ET Y
Sbjct: 659 GEKILNIFEEFGLN-ETNY 676
Score = 174 (66.3 bits), Expect = 4.7e-89, Sum P(3) = 4.7e-89
Identities = 31/58 (53%), Positives = 43/58 (74%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRK 61
YKI V+FPF+ Y CQ M ++++ L +K N +LESPTGTGKTL LLC++LAW++
Sbjct: 191 YKIGNYKVKFPFKPYACQASMMSRILEGLDSKENCILESPTGTGKTLSLLCSSLAWQE 248
>ZFIN|ZDB-GENE-081107-11 [details] [associations]
symbol:brip1 "BRCA1 interacting protein C-terminal
helicase 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-081107-11 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199
TIGRFAMs:TIGR00604 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:EF088194
IPI:IPI00877443 RefSeq:NP_001103766.1 UniGene:Dr.85128
ProteinModelPortal:A8QLH7 STRING:A8QLH7 GeneID:794038
KEGG:dre:794038 NextBio:20931680 ArrayExpress:A8QLH7 Uniprot:A8QLH7
Length = 1217
Score = 570 (205.7 bits), Expect = 4.9e-89, Sum P(3) = 4.9e-89
Identities = 170/580 (29%), Positives = 286/580 (49%)
Query: 383 RDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTS 442
+D A + R H R +N L TLS+WC NP +A + S V SI+LTS
Sbjct: 590 QDLPDAQGFFARPH-RRRQSNRTKTLV----HTLSFWCLNPAVAFSDLSST-VRSIVLTS 643
Query: 443 GTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQ 502
GTLSPM SF+ EL + F +++E HVI Q+W G + GP G L +++++ ++ ++
Sbjct: 644 GTLSPMGSFSSELGIKFSIQLEANHVINKSQVWVGTIGAGPQGRKLCATFQHAETFAFQD 703
Query: 503 ELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR 562
E+G ++ + V G+L F PSY ++D+ W NT +W+++ + K + EPR
Sbjct: 704 EVGALLLKVCHTVSRGVLCFLPSYKMLDKLRDRWTNTG------LWDKLEECKTVITEPR 757
Query: 563 QSSL--FPLAIEDYMAKLKDTSTSG-----AVFFAVCRGKVSEGLDFADHAGRAVVITGM 615
F ++ Y ++ T+ G A+ AVCRGKVSEGLDF D RAVV G+
Sbjct: 758 GGGKGDFDELLQTYYEAIRGTAAKGEKRDGALLVAVCRGKVSEGLDFTDDNARAVVTIGI 817
Query: 616 PFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRH 675
PF + D +V LK +Y D A+S+G L G WY QA RA+NQA+GR IRH
Sbjct: 818 PFPNIKDLQVELKMKYNDKHAKSRG---------LLPGGRWYEIQAYRALNQALGRCIRH 868
Query: 676 RHDYGAIIFCDERF-AHPSRK-SQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTN 733
R+D+GA+I D+RF +P++ + +S W++ ++ + F + +L F + +R G+
Sbjct: 869 RNDWGALILVDDRFRTNPNKYITGLSKWVRQLVRHHDTFTGAMQSLESFSQGQR--GA-- 924
Query: 734 LKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQACY-SLH-EVKNRNTSSHSGEI 791
++ + S + + LE + PA Q +LH EV+ N+ S + +
Sbjct: 925 VETFEEPQSQTAPQCPSPSTVSSPPLEIITPCKPADPQPLQLNLHIEVQTDNSESRASK- 983
Query: 792 VPANRSSLSPYKGIWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKP 851
++ P K S N L S S Q++ F + +SL+ +
Sbjct: 984 TGDQKNIQHPPK---PSREHNVQRTPLSTNHLFTSTPVSSQFKTPIFQSEQNATSLNKQQ 1040
Query: 852 RKEELIAPCSTKKRKVLISESDQMQCVKKISEIASDAESSQPSSFIPITNKVKHEKPQIS 911
++E+I P + K + + ++ ++ +I Q +S +T+ E+ + S
Sbjct: 1041 AQKEVI-PVTPKHQINGDPDQNETSFEPQLEQIFVIPNLKQNTS---VTDLEDTEEDEQS 1096
Query: 912 DSGSRIIAQGSAPSKVDGTTYRIEAEIQSE-KSKGSHSSA 950
S + +G K + ++ +Q+E K+ ++S+A
Sbjct: 1097 IFYSPELFEGGEEEKEEDIEVEEKSSLQAEVKNPAANSTA 1136
Score = 291 (107.5 bits), Expect = 4.9e-89, Sum P(3) = 4.9e-89
Identities = 66/196 (33%), Positives = 100/196 (51%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K+P I + +RTH Q+ Q+ +ELK + Y M IL SR+ C+H EV + + +N C+
Sbjct: 270 KIPKIFFGTRTHKQITQIARELKRTLYSTVPMTILSSRDHTCVHPEV--VPHANRNERCK 327
Query: 152 FLCKKGTNRRCNHHSRVADYMKNNP----HLGDEPIDIEDLVNIGRTFGPCPYFMTRELQ 207
+ R C ++ V + H + DIE+LV +G C Y+ REL
Sbjct: 328 EFLEAKNGRSCRYYHNVHKMRDQSTLQWVHGLHQAWDIEELVRLGGKLRSCAYYAARELM 387
Query: 208 KTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACI 267
+ IVF PYNYL+DP R+ + + K I++ DEAHN+E ++ASF L+ L
Sbjct: 388 QEACIVFCPYNYLLDPLIRESMEINLKEQIVVLDEAHNIEDCARESASFTLNQAQLLLAR 447
Query: 268 SEAKNCIDISSTRRGQ 283
E + + RR Q
Sbjct: 448 DEIDGMVT-HNIRRDQ 462
Score = 159 (61.0 bits), Expect = 4.9e-89, Sum P(3) = 4.9e-89
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKS 62
Y I G+ + FP +AY QL M +I+ L N + LLESPTG+GK+L LLC+ LAW+++
Sbjct: 8 YTIGGVKINFPCKAYPSQLAMMNSIIRGLNNGQHCLLESPTGSGKSLALLCSALAWQQA 66
>UNIPROTKB|Q5RE34 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9601 "Pongo abelii" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=ISS]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0000723
GO:GO:0010569 TIGRFAMs:TIGR00604 KO:K11136 CTD:51750 EMBL:CR857704
RefSeq:NP_001124929.1 UniGene:Pab.2365 ProteinModelPortal:Q5RE34
GeneID:100171800 KEGG:pon:100171800 Uniprot:Q5RE34
Length = 1302
Score = 846 (302.9 bits), Expect = 7.3e-89, Sum P(2) = 7.3e-89
Identities = 197/502 (39%), Positives = 288/502 (57%)
Query: 292 DNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVA 351
++ A L+ +LL+LE I V + + G TKPG YI+EL A+ IT +T ++D ++
Sbjct: 314 EDIAKLKMILLRLEGAIDAVELPGDDSGVTKPGSYIFELFAEAQITFQTKVCILDSLDQI 373
Query: 352 AELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAY-------YRVHVR-EAD-- 401
+ L + ++ I I+ + +G S Y+VH+ +A
Sbjct: 374 IQHLAGRAGVFTNTAGLQKLADIIQIVFSVDPSEGGPGSLAGLGALQSYKVHIHPDAGHR 433
Query: 402 --ANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQEL 455
A +D A+R LS+WCF+PG++M+E R V S+ILTSGTL+P+ SFA E+
Sbjct: 434 QTAQRSDAWSTTAARKRGKVLSYWCFSPGLSMRELVRQGVRSLILTSGTLAPVSSFALEM 493
Query: 456 KLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIV 515
++ FP+ +ENPH+I QIW G+VP GP G L+S++ R S E LG + N AR+V
Sbjct: 494 QIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNTARVV 553
Query: 516 PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSLFPLAIEDY 574
P GLLIFFPSY +M++ + W+ +L E + KP+ VEPR F I Y
Sbjct: 554 PCGLLIFFPSYPVMEKSLEFWRAR---DLARKMEAL----KPLFVEPRSKGSFSETISAY 606
Query: 575 MAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDL 634
A++ ++GA F AVCRGK SEGLDF+D GR V++TG+P+ DP+V LK ++LD
Sbjct: 607 YARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLD- 665
Query: 635 QAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSR 694
+ + QGG + FLSG++WY QQASRAVNQA+GRVIRHR DYGA+ CD RFA
Sbjct: 666 EMKGQGGAGGQ----FLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADA 721
Query: 695 KSQISLWIQPHIQCYSKFGDVVYTLTRFFR-EERICGSTNLKLIKTEV-SGD--VRELK- 749
++Q+ W++PH++ Y FG V+ + +FFR ER + + V G+ VRE+K
Sbjct: 722 RAQLPSWVRPHVRVYDNFGHVIRDVAQFFRVAERTMPAPAPRATAPSVREGEDAVREVKS 781
Query: 750 PVDLLDKISLEEVPSSTPAVDQ 771
P L + + P++ Q
Sbjct: 782 PGPLFSTRKAKSLDLHVPSLKQ 803
Score = 639 (230.0 bits), Expect = 6.6e-62, Sum P(2) = 6.6e-62
Identities = 151/408 (37%), Positives = 228/408 (55%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP + G+ V+FPF+ Y CQ YM KV++ LQ K N +LES TGTGKTLCLLC TLAWR
Sbjct: 1 MPKIVLNGVTVDFPFQPYKCQQEYMTKVLECLQQKVNGILESHTGTGKTLCLLCTTLAWR 60
Query: 61 KSL--G-SFSTLXX----------XXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQL 107
+ L G S + +P I+Y SRTHSQL
Sbjct: 61 EHLRDGISARKIAERVQGELFPDRALSSWGNAAAAAAGDPIACYTDIPKIIYASRTHSQL 120
Query: 108 RQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHS 166
QVI EL+ ++YRPK+ +LGSREQLCIH EV + Q + CR KK +R C+ ++
Sbjct: 121 TQVINELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHIQIHLCR---KKVASRSCHFYN 177
Query: 167 RVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFR 226
V + L +DIEDLV G CPY+++R L++ DI+F PYNYL+D R
Sbjct: 178 NVEEKSLEQ-ELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSR 236
Query: 227 KGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCID--ISSTRRGQ- 283
+ ++ K +++IFDEAHN+E +C ++ASFDL+ L + + ++ + ++G+
Sbjct: 237 RAHNIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDIIDQVLEEQTKTAQQGEP 296
Query: 284 ----SSDET---LNPD--NFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADL 334
S+D T LN + + A L+ +LL+LE I V + + G TKPG YI+EL A+
Sbjct: 297 HPEFSADSTSPGLNMELEDIAKLKMILLRLEGAIDAVELPGDDSGVTKPGSYIFELFAEA 356
Query: 335 NITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
IT +T ++D ++ +++Q + T ++ +++I++I+F
Sbjct: 357 QITFQTKVCILDSLD---QIIQHLAGRAGVFTNTAGLQKLADIIQIVF 401
Score = 73 (30.8 bits), Expect = 7.3e-89, Sum P(2) = 7.3e-89
Identities = 36/183 (19%), Positives = 71/183 (38%)
Query: 861 STKKRKVLISESDQMQCVKKISEIASDAESSQPSSF----IPITNKVKHEKPQISDSGSR 916
ST+K K L ++ S A D ESS + IP + + + S +
Sbjct: 787 STRKAKSLDLHVPSLKQRSSGSAAAGDPESSLCVEYEQEPIPARQRPRGLLAALEHSEQQ 846
Query: 917 IIAQGSAPSKVDGTTYRIEAEIQSEKSKG--------SHSSAPPCGGEETKGSAFLIQVQ 968
+ G + T + + A+ +E+ +G SH P G + + +++ V+
Sbjct: 847 AGSPGEEQAHSCSTLFLLSAKRPAEEPRGGRKKIRLVSHPEEPVAGAQTDRAKLYMVAVK 906
Query: 969 EKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLFA-GPERLPLLRRFKDYVPAKYHPL 1027
++LS + F + + + LFA P++ LL+ F +V +
Sbjct: 907 QELSQANFATFTQ-ALQDYKGSDDFAALAACLGPLFAEDPKKHSLLQGFYQFVRPHHKQQ 965
Query: 1028 YEQ 1030
+E+
Sbjct: 966 FEE 968
Score = 57 (25.1 bits), Expect = 3.6e-87, Sum P(2) = 3.6e-87
Identities = 24/92 (26%), Positives = 36/92 (39%)
Query: 945 GSH----SSAPPCGGEETKG-SAFLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVLQS 999
GSH S P G + + SA+L + L + + + + VL
Sbjct: 1042 GSHPQWRSGVPRAGKQGQRAVSAYLADARRALGSAGCSQLLA-ALRAYKQDDDLDKVLAV 1100
Query: 1000 IAKLF-AGPERLPLLRRFKDYVPAKYHPLYEQ 1030
+A L A PE PLL RF +V + + Q
Sbjct: 1101 LAALTTAKPEDFPLLHRFSMFVRPHHKQRFSQ 1132
>UNIPROTKB|Q9NZ71 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IMP] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=IMP]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 EMBL:CH471077 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
EMBL:AF217796 GO:GO:0000723 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 EMBL:AL353715 KO:K11136 CTD:51750
OrthoDB:EOG412M4Q EMBL:AF217795 EMBL:AB029011 EMBL:AK000485
EMBL:AK302508 EMBL:AK299332 EMBL:AK304798 EMBL:AL080127
IPI:IPI00219849 IPI:IPI00413900 IPI:IPI00718800 IPI:IPI00745153
IPI:IPI00929254 IPI:IPI00929311 IPI:IPI00929712 IPI:IPI00929751
PIR:T12516 PIR:T45294 RefSeq:NP_057518.1 RefSeq:NP_116575.3
UniGene:Hs.434878 ProteinModelPortal:Q9NZ71 SMR:Q9NZ71
IntAct:Q9NZ71 STRING:Q9NZ71 PhosphoSite:Q9NZ71 DMDM:229462743
PaxDb:Q9NZ71 PRIDE:Q9NZ71 GeneID:51750 KEGG:hsa:51750
UCSC:uc002yfu.2 UCSC:uc002yfx.1 UCSC:uc011abd.2 UCSC:uc021wge.1
GeneCards:GC20P062289 HGNC:HGNC:15888 MIM:608833 neXtProt:NX_Q9NZ71
PharmGKB:PA134915625 HOVERGEN:HBG108423 InParanoid:Q9NZ71
GenomeRNAi:51750 NextBio:55835 ArrayExpress:Q9NZ71 Bgee:Q9NZ71
Genevestigator:Q9NZ71 GermOnline:ENSG00000026036 Uniprot:Q9NZ71
Length = 1219
Score = 842 (301.5 bits), Expect = 1.6e-88, Sum P(2) = 1.6e-88
Identities = 193/478 (40%), Positives = 278/478 (58%)
Query: 292 DNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVA 351
++ A L+ +LL+LE I V + + G TKPG YI+EL A+ IT +T ++D ++
Sbjct: 313 EDIAKLKMILLRLEGAIDAVELPGDDSGVTKPGSYIFELFAEAQITFQTKGCILDSLDQI 372
Query: 352 AELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAY-------YRVHVR-EAD-- 401
+ L + ++ I I+ + +G+ S Y+VH+ +A
Sbjct: 373 IQHLAGRAGVFTNTAGLQKLADIIQIVFSVDPSEGSPGSPAGLGALQSYKVHIHPDAGHR 432
Query: 402 --ANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQEL 455
A +D A+R LS+WCF+PG +M E R V S+ILTSGTL+P+ SFA E+
Sbjct: 433 RTAQRSDAWSTTAARKRGKVLSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEM 492
Query: 456 KLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIV 515
++ FP+ +ENPH+I QIW G+VP GP G L+S++ R S E LG + NIAR+V
Sbjct: 493 QIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNIARVV 552
Query: 516 PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSLFPLAIEDY 574
P GLLIFFPSY +M++ + W+ +L E + KP+ VEPR F I Y
Sbjct: 553 PYGLLIFFPSYPVMEKSLEFWRAR---DLARKMEAL----KPLFVEPRSKGSFSETISAY 605
Query: 575 MAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDL 634
A++ ++GA F AVCRGK SEGLDF+D GR V++TG+P+ DP+V LK ++LD
Sbjct: 606 YARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLD- 664
Query: 635 QAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSR 694
+ + QGG + FLSG++WY QQASRAVNQA+GRVIRHR DYGA+ CD RFA
Sbjct: 665 EMKGQGGAGGQ----FLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADA 720
Query: 695 KSQISLWIQPHIQCYSKFGDVVYTLTRFFR-EERICGSTNLKLIKTEVSGD--VRELK 749
++Q+ W++PH++ Y FG V+ + +FFR ER + + V G+ V E K
Sbjct: 721 RAQLPSWVRPHVRVYDNFGHVIRDVAQFFRVAERTMPAPAPRATAPSVRGEDAVSEAK 778
Score = 642 (231.1 bits), Expect = 6.5e-62, Sum P(2) = 6.5e-62
Identities = 150/407 (36%), Positives = 226/407 (55%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP + G+ V+FPF+ Y CQ YM KV++ LQ K N +LESPTGTGKTLCLLC TLAWR
Sbjct: 1 MPKIVLNGVTVDFPFQPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWR 60
Query: 61 KSL-GSFSTLXXX-----------XXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLR 108
+ L S +P I+Y SRTHSQL
Sbjct: 61 EHLRDGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLT 120
Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSR 167
QVI EL+ ++YRPK+ +LGSREQLCIH EV + Q + CR KK +R C+ ++
Sbjct: 121 QVINELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCR---KKVASRSCHFYNN 177
Query: 168 VADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRK 227
V + L +DIEDLV G CPY+++R L++ DI+F PYNYL+D R+
Sbjct: 178 VEEKSLEQ-ELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRR 236
Query: 228 GLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCID--ISSTRRGQ-- 283
++ K +++IFDEAHN+E +C ++ASFDL+ L + + ++ + ++G+
Sbjct: 237 AHNIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAAQQGEPH 296
Query: 284 ---SSDET---LNPD--NFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLN 335
S+D LN + + A L+ +LL+LE I V + + G TKPG YI+EL A+
Sbjct: 297 PEFSADSPSPGLNMELEDIAKLKMILLRLEGAIDAVELPGDDSGVTKPGSYIFELFAEAQ 356
Query: 336 ITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
IT +T ++D ++ +++Q + T ++ +++I++I+F
Sbjct: 357 ITFQTKGCILDSLD---QIIQHLAGRAGVFTNTAGLQKLADIIQIVF 400
Score = 68 (29.0 bits), Expect = 1.6e-88, Sum P(2) = 1.6e-88
Identities = 36/183 (19%), Positives = 69/183 (37%)
Query: 861 STKKRKVLISESDQMQCVKKISEIASDAESSQPSSF----IPITNKVKHEKPQISDSGSR 916
ST+K K L ++ S A D ESS + +P + + + S R
Sbjct: 785 STRKAKSLDLHVPSLKQRSSGSPAAGDPESSLCVEYEQEPVPARQRPRGLLAALEHSEQR 844
Query: 917 IIAQGSAPSKVDGTTYRIEAEIQSEKSKG--------SHSSAPPCGGEETKGSAFLIQVQ 968
+ G + T + + +E+ +G SH P G + + F++ V+
Sbjct: 845 AGSPGEEQAHSCSTLSLLSEKRPAEEPRGGRKKIRLVSHPEEPVAGAQTDRAKLFMVAVK 904
Query: 969 EKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLFA-GPERLPLLRRFKDYVPAKYHPL 1027
++LS + F + + + LFA P++ LL+ F +V +
Sbjct: 905 QELSQANFATFTQ-ALQDYKGSDDFAALAACLGPLFAEDPKKHNLLQGFYQFVRPHHKQQ 963
Query: 1028 YEQ 1030
+E+
Sbjct: 964 FEE 966
Score = 52 (23.4 bits), Expect = 7.9e-87, Sum P(2) = 7.9e-87
Identities = 21/85 (24%), Positives = 32/85 (37%)
Query: 948 SSAPPCGGEETKG-SAFLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLF-A 1005
S P G + SA+L + L + + + + VL +A L A
Sbjct: 1047 SGVPRAGKQGQHAVSAYLADARRALGSAGCSQLLA-ALTAYKQDDDLDKVLAVLAALTTA 1105
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQ 1030
PE PLL RF +V + + Q
Sbjct: 1106 KPEDFPLLHRFSMFVRPHHKQRFSQ 1130
>UNIPROTKB|Q9BX63 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0000077 "DNA damage checkpoint"
evidence=NAS] [GO:0006302 "double-strand break repair"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=IDA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
GO:GO:0000077 GO:GO:0046872 GO:GO:0003677 GO:GO:0031965
GO:GO:0006357 GO:GO:0051539 GO:GO:0004003 GO:GO:0006302 MIM:114480
InterPro:IPR014001 SMART:SM00487 CleanEx:HS_BACH1 Orphanet:145
PDB:1T29 PDBsum:1T29 MIM:227650 Orphanet:84 eggNOG:COG1199
TIGRFAMs:TIGR00604 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AF360549
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 EMBL:BC101472
EMBL:BC101474 EMBL:AK074713 IPI:IPI00012500 IPI:IPI00514398
RefSeq:NP_114432.2 UniGene:Hs.128903 PDB:3AL3 PDBsum:3AL3
ProteinModelPortal:Q9BX63 SMR:Q9BX63 DIP:DIP-41787N IntAct:Q9BX63
MINT:MINT-275883 STRING:Q9BX63 PhosphoSite:Q9BX63 DMDM:57012613
PaxDb:Q9BX63 PRIDE:Q9BX63 DNASU:83990 Ensembl:ENST00000259008
GeneID:83990 KEGG:hsa:83990 UCSC:uc002izk.2 GeneCards:GC17M059759
H-InvDB:HIX0202529 HGNC:HGNC:20473 HPA:HPA005474 MIM:605882
MIM:609054 neXtProt:NX_Q9BX63 PharmGKB:PA134906421
InParanoid:Q9BX63 EvolutionaryTrace:Q9BX63 GenomeRNAi:83990
NextBio:73148 ArrayExpress:Q9BX63 Bgee:Q9BX63 CleanEx:HS_BRIP1
Genevestigator:Q9BX63 GermOnline:ENSG00000136492 Uniprot:Q9BX63
Length = 1249
Score = 569 (205.4 bits), Expect = 2.1e-88, Sum P(3) = 2.1e-88
Identities = 125/347 (36%), Positives = 203/347 (58%)
Query: 412 ASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITS 471
A L++WC NP +A + + +V +I+LTSGTLSPM SF+ EL + F +++E H+I +
Sbjct: 585 AVHVLNFWCLNPAVAFSDING-KVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKN 643
Query: 472 KQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQ 531
Q+W G + GP G L ++++N ++ E++ E+G ++++ + V G+L F PSY L+++
Sbjct: 644 SQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEK 703
Query: 532 CIACWKNTSHGNLTTIWERICKHKKPVVEPR--QSSLFPLAIEDYMAKLK-DTSTSGAVF 588
W +T +W + K +VEP+ + + F ++ Y +K GA+
Sbjct: 704 LKERWLSTG------LWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALL 757
Query: 589 FAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKL 648
AVCRGKVSEGLDF+D RAV+ G+PF + D +V LKR+Y D ++ +G
Sbjct: 758 VAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRG-------- 809
Query: 649 SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAH-PSRK-SQISLWIQPHI 706
L G WY QA RA+NQA+GR IRHR+D+GA+I D+RF + PSR S +S W++ I
Sbjct: 810 -LLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQI 868
Query: 707 QCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDL 753
Q +S F + +L F ++ + + ++K +T + + L+ L
Sbjct: 869 QHHSTFESALESLAEFSKKHQKVLNVSIK-DRTNIQDNESTLEVTSL 914
Score = 277 (102.6 bits), Expect = 2.1e-88, Sum P(3) = 2.1e-88
Identities = 59/172 (34%), Positives = 96/172 (55%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K+P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV + +N C
Sbjct: 242 KIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEV--VGNFNRNEKCM 299
Query: 152 FLCKKGTNRRCN-HHS--RVADYMKNNPHLGD-EPIDIEDLVNIGRTFGPCPYFMTRELQ 207
L + C +H +++D G + DIE+LV++G+ CPY+ REL
Sbjct: 300 ELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELI 359
Query: 208 KTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLS 259
+ DI+F PYNYL+D R+ + + K ++I DEAHN+E ++AS+ ++
Sbjct: 360 QDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVT 411
Score = 169 (64.5 bits), Expect = 2.1e-88, Sum P(3) = 2.1e-88
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ + FP++AY QL M +++ L +K + LLESPTG+GK+L LLC+ LAW++SL
Sbjct: 8 YTIGGVKIYFPYKAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSL 67
Score = 48 (22.0 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 843 SNSSLHAKPRKEELIAPCSTKKR-KVLISESDQMQCVKK 880
++S+ P K L A S KK+ + E+D Q KK
Sbjct: 121 TSSTCQDSPEKTTLAAKLSAKKQASIYRDENDDFQVEKK 159
Score = 38 (18.4 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 514 IVPDGLLIFFPSYYLMD 530
++ D +IF P YL+D
Sbjct: 358 LIQDADIIFCPYNYLLD 374
Score = 37 (18.1 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 19/89 (21%), Positives = 41/89 (46%)
Query: 801 PYKGIWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPC 860
PY + ++++ S DL E+ ++L +I+ E S + + + ++EL +
Sbjct: 368 PYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASY-SVTEVQLRFARDELDSMV 426
Query: 861 STKKRKVLISESDQMQCVKKISEIASDAE 889
+ RK E + C I+ + ++AE
Sbjct: 427 NNNIRKK-DHEPLRAVCCSLINWLEANAE 454
>UNIPROTKB|F6WH68 [details] [associations]
symbol:RTEL1 "Protein RTEL1-TNFRSF6B" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 EMBL:AL121845
TIGRFAMs:TIGR00604 EMBL:AL353715 HGNC:HGNC:15888 OMA:VLKMQFL
HGNC:HGNC:44095 IPI:IPI01021192 SMR:F6WH68 Ensembl:ENST00000318100
Ensembl:ENST00000482936 Uniprot:F6WH68
Length = 1400
Score = 842 (301.5 bits), Expect = 1.8e-87, Sum P(2) = 1.8e-87
Identities = 193/478 (40%), Positives = 278/478 (58%)
Query: 292 DNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVA 351
++ A L+ +LL+LE I V + + G TKPG YI+EL A+ IT +T ++D ++
Sbjct: 313 EDIAKLKMILLRLEGAIDAVELPGDDSGVTKPGSYIFELFAEAQITFQTKGCILDSLDQI 372
Query: 352 AELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAY-------YRVHVR-EAD-- 401
+ L + ++ I I+ + +G+ S Y+VH+ +A
Sbjct: 373 IQHLAGRAGVFTNTAGLQKLADIIQIVFSVDPSEGSPGSPAGLGALQSYKVHIHPDAGHR 432
Query: 402 --ANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQEL 455
A +D A+R LS+WCF+PG +M E R V S+ILTSGTL+P+ SFA E+
Sbjct: 433 RTAQRSDAWSTTAARKRGKVLSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEM 492
Query: 456 KLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIV 515
++ FP+ +ENPH+I QIW G+VP GP G L+S++ R S E LG + NIAR+V
Sbjct: 493 QIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNIARVV 552
Query: 516 PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSLFPLAIEDY 574
P GLLIFFPSY +M++ + W+ +L E + KP+ VEPR F I Y
Sbjct: 553 PYGLLIFFPSYPVMEKSLEFWRAR---DLARKMEAL----KPLFVEPRSKGSFSETISAY 605
Query: 575 MAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDL 634
A++ ++GA F AVCRGK SEGLDF+D GR V++TG+P+ DP+V LK ++LD
Sbjct: 606 YARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLD- 664
Query: 635 QAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSR 694
+ + QGG + FLSG++WY QQASRAVNQA+GRVIRHR DYGA+ CD RFA
Sbjct: 665 EMKGQGGAGGQ----FLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADA 720
Query: 695 KSQISLWIQPHIQCYSKFGDVVYTLTRFFR-EERICGSTNLKLIKTEVSGD--VRELK 749
++Q+ W++PH++ Y FG V+ + +FFR ER + + V G+ V E K
Sbjct: 721 RAQLPSWVRPHVRVYDNFGHVIRDVAQFFRVAERTMPAPAPRATAPSVRGEDAVSEAK 778
Score = 642 (231.1 bits), Expect = 1.5e-61, Sum P(2) = 1.5e-61
Identities = 150/407 (36%), Positives = 226/407 (55%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP + G+ V+FPF+ Y CQ YM KV++ LQ K N +LESPTGTGKTLCLLC TLAWR
Sbjct: 1 MPKIVLNGVTVDFPFQPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWR 60
Query: 61 KSL-GSFSTLXXX-----------XXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLR 108
+ L S +P I+Y SRTHSQL
Sbjct: 61 EHLRDGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLT 120
Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSR 167
QVI EL+ ++YRPK+ +LGSREQLCIH EV + Q + CR KK +R C+ ++
Sbjct: 121 QVINELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCR---KKVASRSCHFYNN 177
Query: 168 VADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRK 227
V + L +DIEDLV G CPY+++R L++ DI+F PYNYL+D R+
Sbjct: 178 VEEKSLEQ-ELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRR 236
Query: 228 GLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCID--ISSTRRGQ-- 283
++ K +++IFDEAHN+E +C ++ASFDL+ L + + ++ + ++G+
Sbjct: 237 AHNIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAAQQGEPH 296
Query: 284 ---SSDET---LNPD--NFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLN 335
S+D LN + + A L+ +LL+LE I V + + G TKPG YI+EL A+
Sbjct: 297 PEFSADSPSPGLNMELEDIAKLKMILLRLEGAIDAVELPGDDSGVTKPGSYIFELFAEAQ 356
Query: 336 ITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
IT +T ++D ++ +++Q + T ++ +++I++I+F
Sbjct: 357 ITFQTKGCILDSLD---QIIQHLAGRAGVFTNTAGLQKLADIIQIVF 400
Score = 68 (29.0 bits), Expect = 1.8e-87, Sum P(2) = 1.8e-87
Identities = 36/183 (19%), Positives = 69/183 (37%)
Query: 861 STKKRKVLISESDQMQCVKKISEIASDAESSQPSSF----IPITNKVKHEKPQISDSGSR 916
ST+K K L ++ S A D ESS + +P + + + S R
Sbjct: 785 STRKAKSLDLHVPSLKQRSSGSPAAGDPESSLCVEYEQEPVPARQRPRGLLAALEHSEQR 844
Query: 917 IIAQGSAPSKVDGTTYRIEAEIQSEKSKG--------SHSSAPPCGGEETKGSAFLIQVQ 968
+ G + T + + +E+ +G SH P G + + F++ V+
Sbjct: 845 AGSPGEEQAHSCSTLSLLSEKRPAEEPRGGRKKIRLVSHPEEPVAGAQTDRAKLFMVAVK 904
Query: 969 EKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLFA-GPERLPLLRRFKDYVPAKYHPL 1027
++LS + F + + + LFA P++ LL+ F +V +
Sbjct: 905 QELSQANFATFTQ-ALQDYKGSDDFAALAACLGPLFAEDPKKHNLLQGFYQFVRPHHKQQ 963
Query: 1028 YEQ 1030
+E+
Sbjct: 964 FEE 966
Score = 52 (23.4 bits), Expect = 8.7e-86, Sum P(2) = 8.7e-86
Identities = 21/85 (24%), Positives = 32/85 (37%)
Query: 948 SSAPPCGGEETKG-SAFLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLF-A 1005
S P G + SA+L + L + + + + VL +A L A
Sbjct: 1047 SGVPRAGKQGQHAVSAYLADARRALGSAGCSQLLA-ALTAYKQDDDLDKVLAVLAALTTA 1105
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQ 1030
PE PLL RF +V + + Q
Sbjct: 1106 KPEDFPLLHRFSMFVRPHHKQRFSQ 1130
>UNIPROTKB|J9NVZ8 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AAEX03006594 EMBL:AAEX03006595
EMBL:AAEX03006596 Ensembl:ENSCAFT00000045493 Uniprot:J9NVZ8
Length = 1214
Score = 561 (202.5 bits), Expect = 2.6e-87, Sum P(4) = 2.6e-87
Identities = 128/365 (35%), Positives = 210/365 (57%)
Query: 412 ASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITS 471
A L++WC NP +A + + +V +I+LTSGTLSPM SF+ EL + F +++E HVI +
Sbjct: 584 AVHVLNFWCLNPAVAFSDING-KVLTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINN 642
Query: 472 KQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQ 531
Q+W G + GP G L +++++ ++ E++ E+G ++++ + V G+L F PSY L+++
Sbjct: 643 SQVWVGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQTVNQGILCFLPSYKLLEK 702
Query: 532 CIACWKNTSHGNLTTIWERICKHKKPVVEPR--QSSLFPLAIEDYMAKLK-DTSTSGAVF 588
W T +W + K +VEP+ + + F ++ Y +K GA+
Sbjct: 703 LKERWLYTG------LWHNLELVKTVIVEPQGGEKTDFNELLQVYYDAIKYKGEKDGALL 756
Query: 589 FAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKL 648
AVCRGKVSEGLDF+D RAV+ G+PF + D +V LKR+Y D ++ +G
Sbjct: 757 VAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDQHSKLRG-------- 808
Query: 649 SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF-AHPSRK-SQISLWIQPHI 706
L G WY QA RA+NQA+GR IRH++D+GA+I D+RF ++PSR S +S WI+ I
Sbjct: 809 -LLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKWIRQQI 867
Query: 707 QCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSST 766
Q +S F + +L+ F R+ + N+ + + D + V L +L + +++
Sbjct: 868 QHHSTFESALESLSDFSRKHQKV--INVSKEDRKFTQDSESILEVTCLKDNTLTYLEAAS 925
Query: 767 PAVDQ 771
P + +
Sbjct: 926 PLIPE 930
Score = 266 (98.7 bits), Expect = 2.6e-87, Sum P(4) = 2.6e-87
Identities = 58/174 (33%), Positives = 94/174 (54%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K+P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV + +N C
Sbjct: 241 KIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEV--VGNFNRNEKCM 298
Query: 152 FLCKKGTNRRCNHHSRVADYMKNNPHLGD------EPIDIEDLVNIGRTFGPCPYFMTRE 205
L + C + V + +N H + DIE+LV++G+ CPY+ RE
Sbjct: 299 ELLDGKNGKSCYFYHGV--HKISNQHTLQTLQGMCKAWDIEELVSLGKKLKACPYYTARE 356
Query: 206 LQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLS 259
L + I+F PYNYL+D R+ + + K ++I DEAHN+E ++AS+ ++
Sbjct: 357 LIEDAHIIFCPYNYLLDAQIRESMDINLKEQVVILDEAHNIEDCARESASYSVT 410
Score = 186 (70.5 bits), Expect = 1.7e-45, Sum P(3) = 1.7e-45
Identities = 82/306 (26%), Positives = 142/306 (46%)
Query: 633 DLQAQSQGGEYKE--TKL-SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF 689
DLQ + + +Y + +KL L G WY QA RA+NQA+GR IRH++D+GA+I D+RF
Sbjct: 790 DLQVELKR-QYNDQHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRF 848
Query: 690 -AHPSRK-SQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRE 747
++PSR S +S WI+ IQ +S F + +L+ F R+ + N+ + + D
Sbjct: 849 RSNPSRYISGLSKWIRQQIQHHSTFESALESLSDFSRKHQKV--INVSKEDRKFTQDSES 906
Query: 748 LKPVDLLDKISLEEVPSSTPAVDQACYSLHEVKNRNTSSHSGEIV---PANRSSLSPYKG 804
+ V L +L + +++P + + E K R I P R +S +
Sbjct: 907 ILEVTCLKDNTLTYLEAASPLIPENPRK-GEAKIRVQEQQCLTITESPPLPRGIISKKEK 965
Query: 805 IWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPCSTKK 864
+ + ++ EK ++ I + + + ++ +SL E L A K
Sbjct: 966 DDPVLSEEFAQAVKAEKNVISRSTSPIFNKQTKPVSWSNFNSLERYFTGEILTA--GPKF 1023
Query: 865 RKVLISESDQMQCVKKISEIASDAESSQPSSFIPITNKVKHEKPQISDSGSRIIAQGSAP 924
R S D C IS + ++ E + + +P+T+K + P ++ S S+ S
Sbjct: 1024 R----SPED---CASSISTLETE-EGYK--TVLPLTDKCESSSPMLNASCSQSEVISSV- 1072
Query: 925 SKVDGT 930
K+D T
Sbjct: 1073 -KIDST 1077
Score = 173 (66.0 bits), Expect = 2.6e-87, Sum P(4) = 2.6e-87
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ + FP++AY QL M +++ L +K + LLESPTG+GK+L LLC+TLAW++S+
Sbjct: 8 YTIGGVKITFPYKAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSTLAWQQSV 67
Score = 47 (21.6 bits), Expect = 2.6e-87, Sum P(4) = 2.6e-87
Identities = 28/130 (21%), Positives = 52/130 (40%)
Query: 750 PVDLLDKISLEEVPSS----TPAVDQACYSLHEVKNRNTSSHSGEIVPANRSSLSPYKGI 805
P D IS E P D+ C S + N + S E++ + + + K
Sbjct: 1026 PEDCASSISTLETEEGYKTVLPLTDK-CESSSPMLNASCSQ--SEVISSVKIDSTLLKRN 1082
Query: 806 WASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTS-NSSLHAKPRKEELIAPCSTKK 864
+ +L + + + +L L G ++ H + + + S++ P EL P T +
Sbjct: 1083 CSKQLFCCEEAVDPDIELSLLGEEAKSSTSHRASETEAEDESIYFSP---ELYDPADTNE 1139
Query: 865 RKVLISESDQ 874
K + ESD+
Sbjct: 1140 EKNELVESDR 1149
Score = 47 (21.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 843 SNSSLHAKPRKEELIAPCSTKKR-KVLISESDQMQCVKK 880
++S+ P K L A S KK+ + E+D Q KK
Sbjct: 120 TSSTCQDSPEKTTLAAKLSAKKQASIKRDENDDFQVEKK 158
Score = 39 (18.8 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 514 IVPDGLLIFFPSYYLMD 530
++ D +IF P YL+D
Sbjct: 357 LIEDAHIIFCPYNYLLD 373
>UNIPROTKB|E2RHN5 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031965 "nuclear membrane" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 OMA:GVHKISD EMBL:AAEX03006594
EMBL:AAEX03006595 EMBL:AAEX03006596 Ensembl:ENSCAFT00000028135
Uniprot:E2RHN5
Length = 1244
Score = 561 (202.5 bits), Expect = 3.4e-87, Sum P(4) = 3.4e-87
Identities = 128/365 (35%), Positives = 210/365 (57%)
Query: 412 ASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITS 471
A L++WC NP +A + + +V +I+LTSGTLSPM SF+ EL + F +++E HVI +
Sbjct: 585 AVHVLNFWCLNPAVAFSDING-KVLTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINN 643
Query: 472 KQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQ 531
Q+W G + GP G L +++++ ++ E++ E+G ++++ + V G+L F PSY L+++
Sbjct: 644 SQVWVGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQTVNQGILCFLPSYKLLEK 703
Query: 532 CIACWKNTSHGNLTTIWERICKHKKPVVEPR--QSSLFPLAIEDYMAKLK-DTSTSGAVF 588
W T +W + K +VEP+ + + F ++ Y +K GA+
Sbjct: 704 LKERWLYTG------LWHNLELVKTVIVEPQGGEKTDFNELLQVYYDAIKYKGEKDGALL 757
Query: 589 FAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKL 648
AVCRGKVSEGLDF+D RAV+ G+PF + D +V LKR+Y D ++ +G
Sbjct: 758 VAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDQHSKLRG-------- 809
Query: 649 SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF-AHPSRK-SQISLWIQPHI 706
L G WY QA RA+NQA+GR IRH++D+GA+I D+RF ++PSR S +S WI+ I
Sbjct: 810 -LLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKWIRQQI 868
Query: 707 QCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSST 766
Q +S F + +L+ F R+ + N+ + + D + V L +L + +++
Sbjct: 869 QHHSTFESALESLSDFSRKHQKV--INVSKEDRKFTQDSESILEVTCLKDNTLTYLEAAS 926
Query: 767 PAVDQ 771
P + +
Sbjct: 927 PLIPE 931
Score = 266 (98.7 bits), Expect = 3.4e-87, Sum P(4) = 3.4e-87
Identities = 58/174 (33%), Positives = 94/174 (54%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K+P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV + +N C
Sbjct: 242 KIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEV--VGNFNRNEKCM 299
Query: 152 FLCKKGTNRRCNHHSRVADYMKNNPHLGD------EPIDIEDLVNIGRTFGPCPYFMTRE 205
L + C + V + +N H + DIE+LV++G+ CPY+ RE
Sbjct: 300 ELLDGKNGKSCYFYHGV--HKISNQHTLQTLQGMCKAWDIEELVSLGKKLKACPYYTARE 357
Query: 206 LQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLS 259
L + I+F PYNYL+D R+ + + K ++I DEAHN+E ++AS+ ++
Sbjct: 358 LIEDAHIIFCPYNYLLDAQIRESMDINLKEQVVILDEAHNIEDCARESASYSVT 411
Score = 186 (70.5 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 82/306 (26%), Positives = 142/306 (46%)
Query: 633 DLQAQSQGGEYKE--TKL-SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF 689
DLQ + + +Y + +KL L G WY QA RA+NQA+GR IRH++D+GA+I D+RF
Sbjct: 791 DLQVELKR-QYNDQHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRF 849
Query: 690 -AHPSRK-SQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRE 747
++PSR S +S WI+ IQ +S F + +L+ F R+ + N+ + + D
Sbjct: 850 RSNPSRYISGLSKWIRQQIQHHSTFESALESLSDFSRKHQKV--INVSKEDRKFTQDSES 907
Query: 748 LKPVDLLDKISLEEVPSSTPAVDQACYSLHEVKNRNTSSHSGEIV---PANRSSLSPYKG 804
+ V L +L + +++P + + E K R I P R +S +
Sbjct: 908 ILEVTCLKDNTLTYLEAASPLIPENPRK-GEAKIRVQEQQCLTITESPPLPRGIISKKEK 966
Query: 805 IWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPCSTKK 864
+ + ++ EK ++ I + + + ++ +SL E L A K
Sbjct: 967 DDPVLSEEFAQAVKAEKNVISRSTSPIFNKQTKPVSWSNFNSLERYFTGEILTA--GPKF 1024
Query: 865 RKVLISESDQMQCVKKISEIASDAESSQPSSFIPITNKVKHEKPQISDSGSRIIAQGSAP 924
R S D C IS + ++ E + + +P+T+K + P ++ S S+ S
Sbjct: 1025 R----SPED---CASSISTLETE-EGYK--TVLPLTDKCESSSPMLNASCSQSEVISSV- 1073
Query: 925 SKVDGT 930
K+D T
Sbjct: 1074 -KIDST 1078
Score = 173 (66.0 bits), Expect = 3.4e-87, Sum P(4) = 3.4e-87
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ + FP++AY QL M +++ L +K + LLESPTG+GK+L LLC+TLAW++S+
Sbjct: 8 YTIGGVKITFPYKAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSTLAWQQSV 67
Score = 49 (22.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 842 TSNSSLHAKPRKEELIAPCSTKKR-KVLISESDQMQCVKK 880
TS++ P K L A S KK+ + E+D Q KK
Sbjct: 120 TSSTCQEDSPEKTTLAAKLSAKKQASIKRDENDDFQVEKK 159
Score = 47 (21.6 bits), Expect = 3.4e-87, Sum P(4) = 3.4e-87
Identities = 28/130 (21%), Positives = 52/130 (40%)
Query: 750 PVDLLDKISLEEVPSS----TPAVDQACYSLHEVKNRNTSSHSGEIVPANRSSLSPYKGI 805
P D IS E P D+ C S + N + S E++ + + + K
Sbjct: 1027 PEDCASSISTLETEEGYKTVLPLTDK-CESSSPMLNASCSQ--SEVISSVKIDSTLLKRN 1083
Query: 806 WASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTS-NSSLHAKPRKEELIAPCSTKK 864
+ +L + + + +L L G ++ H + + + S++ P EL P T +
Sbjct: 1084 CSKQLFCCEEAVDPDIELSLLGEEAKSSTSHRASETEAEDESIYFSP---ELYDPADTNE 1140
Query: 865 RKVLISESDQ 874
K + ESD+
Sbjct: 1141 EKNELVESDR 1150
Score = 39 (18.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 514 IVPDGLLIFFPSYYLMD 530
++ D +IF P YL+D
Sbjct: 358 LIEDAHIIFCPYNYLLD 374
>UNIPROTKB|D4ACW5 [details] [associations]
symbol:Brip1 "Protein Brip1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 TIGRFAMs:TIGR00604 OrthoDB:EOG4J6RQ8 IPI:IPI00372668
Ensembl:ENSRNOT00000038829 ArrayExpress:D4ACW5 Uniprot:D4ACW5
Length = 1170
Score = 561 (202.5 bits), Expect = 4.6e-87, Sum P(4) = 4.6e-87
Identities = 125/358 (34%), Positives = 206/358 (57%)
Query: 416 LSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIW 475
L++WC NP +A + + +V +I+LTSGTLSP+ SF+ EL + F +++E HVI++ Q+W
Sbjct: 590 LNFWCLNPAVAFSDIND-KVRTIVLTSGTLSPLKSFSSELGVTFNIQLEANHVISNSQVW 648
Query: 476 AGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIAC 535
G V GP G L +++++ ++ E++ E+G ++++ + V G+L F PSY L+++
Sbjct: 649 VGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKLRER 708
Query: 536 WKNTSHGNLTTIWERICKHKKPVVEPR--QSSLFPLAIEDYMAKLK-DTSTSGAVFFAVC 592
W T +W + K + EP+ + + F ++ Y +K GA+ AVC
Sbjct: 709 WI------FTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVC 762
Query: 593 RGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLS 652
RGKVSEGLDF+D RAV+ G+PF + D +V LKR+Y D ++ +G L
Sbjct: 763 RGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRG---------LLP 813
Query: 653 GEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAH-PSRK-SQISLWIQPHIQCYS 710
G WY QA RA+NQA+GR IRH++D+GA+I D+RF + P R S +S W++ IQ +S
Sbjct: 814 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFNNNPDRYISGLSKWVRQQIQHHS 873
Query: 711 KFGDVVYTLTRFF-REERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTP 767
F + +LT F R +++ + + T+ +G ++ ++ S+ E TP
Sbjct: 874 TFASALESLTEFSKRHQKVTNRSKKEEKCTKENGSTLDVACLEGSTLTSVSEASHQTP 931
Score = 276 (102.2 bits), Expect = 4.6e-87, Sum P(4) = 4.6e-87
Identities = 65/194 (33%), Positives = 104/194 (53%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV + +N C
Sbjct: 243 KRPKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHTCVHPEV--VGNFNRNEKCM 300
Query: 152 FLCKKGTNRRCN-HHS--RVADYMKNN-PHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQ 207
L + C +H R+++ H + DIE+LV++GR CPY+ REL
Sbjct: 301 ELLDGKHGKSCYFYHGVHRISNQQTLQFLHGISKAWDIEELVSLGRKLKACPYYTARELI 360
Query: 208 KTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACI 267
+ DI+F PYNYL+D R+ + ++ K ++I DEAHN+E + AS+ ++ L
Sbjct: 361 DSADIIFCPYNYLLDSQIRESMDIKLKEQVVILDEAHNIEECARETASYSVTEVQLRFAR 420
Query: 268 SEAKNCIDISSTRR 281
E + I+ S+ R+
Sbjct: 421 DELDSLIN-SNIRK 433
Score = 197 (74.4 bits), Expect = 1.2e-46, Sum P(3) = 1.2e-46
Identities = 89/337 (26%), Positives = 148/337 (43%)
Query: 633 DLQAQSQGGEYKE--TKL-SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF 689
DLQ + + +Y + +KL L G WY QA RA+NQA+GR IRH++D+GA+I D+RF
Sbjct: 792 DLQVELKR-QYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRF 850
Query: 690 AH-PSRK-SQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRE 747
+ P R S +S W++ IQ +S F + +LT F + + TN + + + +
Sbjct: 851 NNNPDRYISGLSKWVRQQIQHHSTFASALESLTEFSKRHQKV--TNRSKKEEKCTKENGS 908
Query: 748 LKPVDLLDKISLEEVPSSTPAVDQACYSLHEVKNRNTSSHSGEIVPANRSSLSPYKGIWA 807
V L+ +L V ++ + E K ++ N S P G+
Sbjct: 909 TLDVACLEGSTLTSVSEASHQTPENSLE-EEAKVCVQEQRYPQMAAENPSG--PSHGV-- 963
Query: 808 SELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKV 867
S K S ++ KS+Q E +++ +SS + E + P ++
Sbjct: 964 SRRKESDPGLR---------EKSVQTMKTEKSEISRSSSPTFGKQTEPVNWPIFNSLKRH 1014
Query: 868 LISESDQMQCVKKISEIASDAESSQPSSFIPITNK-VKHEKPQISDSGSRIIAQGSAPS- 925
S+ V K S+ + A S+ + +P+T K V P + ++ PS
Sbjct: 1015 FNSKVKNRTPVLKSSKNHASASSAFNKTALPLTGKCVSSSAPANTPLAPCPQSEVIIPSV 1074
Query: 926 KVDGTTYRIEAEIQSEKSKGSHSSAPPCGGEETKGSA 962
K D T + + Q+EK + P EE KGS+
Sbjct: 1075 KADTTPAKTHCK-QNEKDPSPDAELSPVT-EEAKGSS 1109
Score = 162 (62.1 bits), Expect = 4.6e-87, Sum P(4) = 4.6e-87
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ + FP AY QL M +++ L + + LLESPTG+GK+L LLC+ LAW++SL
Sbjct: 8 YTIGGVKIHFPCRAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQSL 67
Score = 44 (20.5 bits), Expect = 4.6e-87, Sum P(4) = 4.6e-87
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 738 KTEVSGDVRELKPVDLLDKISLE-EVPSSTPAV------DQACYSLHEVKNRNTSSHSGE 790
KT + ++ P L ++ E + SS PAV D C++ +T + E
Sbjct: 1082 KTHCKQNEKDPSPDAELSPVTEEAKGSSSNPAVGTEVDDDSVCFTPELFDPVSTDEENSE 1141
Query: 791 IVPANRSS 798
+V +RSS
Sbjct: 1142 LVETDRSS 1149
Score = 39 (18.8 bits), Expect = 4.9e-06, Sum P(3) = 4.9e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 483 PSGYLLNSSYRNRDSIEYKQEL 504
P YLL+S R I+ K+++
Sbjct: 369 PYNYLLDSQIRESMDIKLKEQV 390
Score = 37 (18.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 790 EIVPANRSSLSPYKGIWASELKNSSDLIQFEKKLLLSGRKSIQ 832
E++ + PY + S+++ S D+ E+ ++L +I+
Sbjct: 358 ELIDSADIIFCPYNYLLDSQIRESMDIKLKEQVVILDEAHNIE 400
>MGI|MGI:2442836 [details] [associations]
symbol:Brip1 "BRCA1 interacting protein C-terminal helicase
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2442836
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006357
GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
CleanEx:MM_BACH1 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AL592465
EMBL:AL592065 EMBL:AL645690 EMBL:BC094252 EMBL:AK051878
EMBL:AK080771 IPI:IPI00319607 RefSeq:NP_840094.1 UniGene:Mm.186143
ProteinModelPortal:Q5SXJ3 SMR:Q5SXJ3 STRING:Q5SXJ3
PhosphoSite:Q5SXJ3 PRIDE:Q5SXJ3 Ensembl:ENSMUST00000044423
GeneID:237911 KEGG:mmu:237911 UCSC:uc007ksf.2 InParanoid:Q5SXJ3
OMA:GVHKISD ChiTaRS:BRIP1 NextBio:383570 Bgee:Q5SXJ3
CleanEx:MM_BRIP1 Genevestigator:Q5SXJ3
GermOnline:ENSMUSG00000034329 Uniprot:Q5SXJ3
Length = 1174
Score = 564 (203.6 bits), Expect = 6.9e-87, Sum P(4) = 6.9e-87
Identities = 120/317 (37%), Positives = 191/317 (60%)
Query: 416 LSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIW 475
L++WC NP +A + + +V +I+LTSGTLSP+ SF+ EL + F +++E HVI++ Q+W
Sbjct: 592 LNFWCLNPAVAFSDIND-KVRTIVLTSGTLSPLKSFSSELGVTFSIQLEANHVISNSQVW 650
Query: 476 AGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIAC 535
G V GP G L +++++ ++ E++ E+G ++++ + V G+L F PSY L+++
Sbjct: 651 VGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKLRER 710
Query: 536 WKNTSHGNLTTIWERICKHKKPVVEPR--QSSLFPLAIEDYMAKLK-DTSTSGAVFFAVC 592
W T +W + K + EP+ + + F ++ Y +K GA+ AVC
Sbjct: 711 WI------FTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVC 764
Query: 593 RGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLS 652
RGKVSEGLDF+D RAV+ G+PF + D +V LKR+Y D ++S+G L
Sbjct: 765 RGKVSEGLDFSDDNARAVITVGIPFPNVKDLQVELKRQYNDHHSKSRG---------LLP 815
Query: 653 GEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAH-PSRK-SQISLWIQPHIQCYS 710
G WY QA RA+NQA+GR IRH++D+GA+I D+RF + P+R S +S W++ IQ +S
Sbjct: 816 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFNNNPNRYISGLSKWVRQQIQHHS 875
Query: 711 KFGDVVYTLTRFFREER 727
F + +LT F R +
Sbjct: 876 SFASALESLTEFSRRHQ 892
Score = 269 (99.8 bits), Expect = 6.9e-87, Sum P(4) = 6.9e-87
Identities = 64/188 (34%), Positives = 97/188 (51%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV + + C
Sbjct: 245 KRPKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHSCVHPEV--VGNFNRKEKCM 302
Query: 152 FLCKKGTNRRCNHHSRVADYMKNNP--HL-G-DEPIDIEDLVNIGRTFGPCPYFMTRELQ 207
L + C + V HL G DIE+LV++GR CPY+ REL
Sbjct: 303 ELLDGKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELI 362
Query: 208 KTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACI 267
+ DIVF PYNYL+D R+ + ++ K ++I DEAHN+E ++AS+ ++ L
Sbjct: 363 EDADIVFCPYNYLLDSQIRETMDIKLKGQVVILDEAHNIEDCARESASYSVTEVQLRFAR 422
Query: 268 SEAKNCID 275
E + I+
Sbjct: 423 DELDSLIN 430
Score = 162 (62.1 bits), Expect = 6.9e-87, Sum P(4) = 6.9e-87
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ + FP AY QL M +++ L + + LLESPTG+GK+L LLC+ LAW++SL
Sbjct: 8 YTIGGVKIHFPCRAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQSL 67
Score = 46 (21.3 bits), Expect = 6.9e-87, Sum P(4) = 6.9e-87
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 723 FREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQACYSLHEVKNR 782
+ ++ C +L L TE+S E K +K + EV D C++
Sbjct: 1085 YSKQVFCCEKDL-LPDTELSPGTEEAK-CPSSNKAAETEVDD-----DSECFTPELFDPV 1137
Query: 783 NTSSHSGEIVPANRSSLS 800
+T+ +GE+V +RSS S
Sbjct: 1138 DTNEENGELVETDRSSHS 1155
Score = 46 (21.3 bits), Expect = 6.9e-87, Sum P(4) = 6.9e-87
Identities = 31/135 (22%), Positives = 56/135 (41%)
Query: 828 RKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQ--CVKKISEIA 885
R+ IQ+ F ++ SL R+ + + S K K ++ C++ S
Sbjct: 868 RQQIQHHS-SFA--SALESLTEFSRRHQKVTNRSKKDEKCTKDNEPTLEVACLED-STFT 923
Query: 886 SDAESSQ--PSSFIPITNKVKHEK--PQISDSGSRIIAQGSAPSKVDGTTYRIEA--EIQ 939
S +ESS P + E PQ++ + + G + K R E+ ++
Sbjct: 924 SVSESSHQSPENSTEEAEVCVQELQCPQVATKSPSVASHGVSRRKKSDPGLRGESLQTMK 983
Query: 940 SEKSKGSHSSAPPCG 954
+EK++ S SS+P G
Sbjct: 984 TEKNEISRSSSPTFG 998
Score = 45 (20.9 bits), Expect = 8.8e-87, Sum P(4) = 8.8e-87
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 861 STKKRKVLISESDQMQCVKKISEIASDAESSQPSSFIPITNK----VKHEKPQISDSGSR 916
ST++ +V + E Q K +AS S + S + + +K EK +IS S S
Sbjct: 936 STEEAEVCVQELQCPQVATKSPSVASHGVSRRKKSDPGLRGESLQTMKTEKNEISRSSSP 995
Query: 917 IIAQGSAP 924
+ + P
Sbjct: 996 TFGKQTEP 1003
Score = 42 (19.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 851 PRKEELIAPCSTKKR-KVLISESDQMQCVKK 880
P K L A S KK+ + E D Q KK
Sbjct: 129 PEKNTLAAKLSAKKQASIHRDEDDDFQVEKK 159
Score = 38 (18.4 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 514 IVPDGLLIFFPSYYLMDQCI 533
++ D ++F P YL+D I
Sbjct: 361 LIEDADIVFCPYNYLLDSQI 380
>UNIPROTKB|E2RLA6 [details] [associations]
symbol:RTEL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 OMA:VLKMQFL EMBL:AAEX03014162
EMBL:AAEX03014163 Ensembl:ENSCAFT00000020689 Uniprot:E2RLA6
Length = 1232
Score = 825 (295.5 bits), Expect = 2.3e-86, Sum P(3) = 2.3e-86
Identities = 185/452 (40%), Positives = 266/452 (58%)
Query: 292 DNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVA 351
++ A L+ +LL+LE I V + G TKPG YI+EL A+ IT +T ++D ++
Sbjct: 312 EDLAKLKMILLRLEAAIDAVELPGDHSGVTKPGSYIFELFAEAQITFQTKGCILDSLDQI 371
Query: 352 AELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSA-------YYRVHVREADAN- 403
+ L + ++ I I+ +GT S Y+VH+ DA
Sbjct: 372 IQHLAGRTGLFSNTAGLQKLSDIIQIVFSADPAEGTPGSLGGPGACQSYKVHIHP-DAGH 430
Query: 404 -----AADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQE 454
+D A+R LS+WCF+PG +M++ + V ++ILTSGTL+P+ SFA E
Sbjct: 431 HRKGPRSDAWSSTAARKPGKVLSYWCFSPGHSMRQLVQQGVRTVILTSGTLAPVSSFALE 490
Query: 455 LKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARI 514
+++ FP+ +ENPHVI +QIW GIV GP G L+S++ R S LG + NIAR+
Sbjct: 491 MQIPFPVCLENPHVIHQQQIWVGIVSRGPDGAQLSSAFDKRFSEACLSSLGKALGNIARV 550
Query: 515 VPDGLLIFFPSYYLMDQCIACWK-NTSHGNLTTIWERICKHKKPV-VEPRQSSLFPLAIE 572
VP GLL+FFPSY ++++ + W+ + S G L + KPV VEPR F ++
Sbjct: 551 VPHGLLVFFPSYPVLERSLQFWRTHDSAGKLEAL--------KPVFVEPRNKGGFSEVVD 602
Query: 573 DYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYL 632
Y A++ ++GA F AVCRGK SEGLDFAD GR V+ITG+P+ DP+V LK ++L
Sbjct: 603 AYYARVACPGSTGATFLAVCRGKASEGLDFADMNGRGVIITGLPYPPRMDPRVVLKMQFL 662
Query: 633 DLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHP 692
D + ++ G + LSG +WY QQASRAVNQA+GRVIRHRHDYGAI CD RFAH
Sbjct: 663 D-EIKNHRGPGGQ----LLSGHEWYRQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAHV 717
Query: 693 SRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
++Q+ W++PH++ Y FG V+ + +FFR
Sbjct: 718 DARAQLPSWVRPHVRVYDSFGPVIRDVAQFFR 749
Score = 656 (236.0 bits), Expect = 3.9e-61, Sum P(3) = 3.9e-61
Identities = 152/406 (37%), Positives = 224/406 (55%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP + G+ V+FPFE Y CQ YM KV++ LQ + N +LESPTGTGKTLCLLC+TLAWR
Sbjct: 1 MPKITLNGVAVDFPFEPYKCQEEYMSKVLECLQKRVNGILESPTGTGKTLCLLCSTLAWR 60
Query: 61 KSL-GSFST----------LXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQ 109
+ L + S L +P I+Y SRTHSQL Q
Sbjct: 61 EHLRDAISAHKIAERVQGELFLDRTLSSWGDAAADAGAAACYADIPKIIYASRTHSQLTQ 120
Query: 110 VIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSRV 168
VI+EL+ ++YRP++ +LGSREQLCIH EV + Q + CR KK +R C+ ++ V
Sbjct: 121 VIRELRNTSYRPRVCVLGSREQLCIHPEVKKQESNHMQIHLCR---KKVASRSCHFYNNV 177
Query: 169 ADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKG 228
+ L +DIEDLV G CPY+++R L++ DI+F PYNYL+D R+
Sbjct: 178 EEKSLEQ-ELATPILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLDTKSRRA 236
Query: 229 LGVEWKNSILIFDEAHNLEGICADAASFDLS-----SGL--LTACISEAKNCIDISSTRR 281
++ K +++IFDEAHN+E +C + ASFDL+ SGL L + E R
Sbjct: 237 HSIDLKGTVVIFDEAHNVEKMCEETASFDLTPHDVASGLDVLDQVLEEQTKAAQQDELRS 296
Query: 282 GQSSDET-----LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNI 336
S+D + ++ A L+ +LL+LE I V + G TKPG YI+EL A+ I
Sbjct: 297 EFSADSVNSGLHMELEDLAKLKMILLRLEAAIDAVELPGDHSGVTKPGSYIFELFAEAQI 356
Query: 337 TQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
T +T ++D ++ +++Q + + ++ +S+I++I+F
Sbjct: 357 TFQTKGCILDSLD---QIIQHLAGRTGLFSNTAGLQKLSDIIQIVF 399
Score = 47 (21.6 bits), Expect = 2.3e-86, Sum P(3) = 2.3e-86
Identities = 16/71 (22%), Positives = 29/71 (40%)
Query: 961 SAFLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLFAG-PERLPLLRRFKDY 1019
SA+L V+ L + + + + V+ +A L PE PLL+RF +
Sbjct: 1065 SAYLADVRTALGSAGCSQLLA-ALTAYKRDDDLEKVVAVVAALTTSRPEDFPLLQRFSMF 1123
Query: 1020 VPAKYHPLYEQ 1030
+ + + Q
Sbjct: 1124 LRPHHKQRFRQ 1134
Score = 39 (18.8 bits), Expect = 2.3e-86, Sum P(3) = 2.3e-86
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 856 LIAPCSTKKRKVLISESDQMQCVKKISEIASDAESS 891
L P ST+K K L ++ S A D ESS
Sbjct: 779 LPGPLSTRKAKSLDVHVPSLRRTPTGSPAARDTESS 814
Score = 38 (18.4 bits), Expect = 5.0e-61, Sum P(3) = 5.0e-61
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 596 VSEGLDFADHA--GRAVVITGMPFATMTDPKVRLKREYLDLQAQSQG 640
V+ LD H G +++G P A DP R E D AQ QG
Sbjct: 1016 VARQLDPGQHLNQGGPHLLSG-P-APAGDPSSRPGEEPRDAAAQRQG 1060
>UNIPROTKB|D4ACH4 [details] [associations]
symbol:Rtel1 "Regulator of telomere elongation helicase 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR006935 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF04851 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
IPI:IPI00781945 Ensembl:ENSRNOT00000029336 ArrayExpress:D4ACH4
Uniprot:D4ACH4
Length = 1165
Score = 820 (293.7 bits), Expect = 5.4e-86, Sum P(2) = 5.4e-86
Identities = 183/460 (39%), Positives = 274/460 (59%)
Query: 284 SSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYK 343
SS + ++ A L+ +LL LE+ I V + + G TKPG YI+EL A+ IT +T
Sbjct: 305 SSGLNMELEDIAKLKMILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKGC 364
Query: 344 LIDIVEVAAELL--QEDKLQN----KKSTTACRIE-SISNILKIIFRDKGTAHSAYYRVH 396
+++ ++ + L + N +K +I S+ + G S +Y+VH
Sbjct: 365 ILESLDQIIQHLTGRTGVFTNTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHFYKVH 424
Query: 397 VR-EAD----ANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSP 447
+ E A +D ASR LS+WCF+P +M+E + V ++ILTSGTL+P
Sbjct: 425 IHPETSHRRAAQRSDAWSTTASRKQGKVLSYWCFSPSHSMRELVQQGVRTLILTSGTLAP 484
Query: 448 MDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNT 507
+ SFA E+++ FP+ +ENPH+I Q+W G++P GP G L+S+Y R S E LG
Sbjct: 485 LSSFALEMQIPFPVCLENPHIIDKNQLWVGVIPRGPDGVQLSSAYDKRFSEECLSSLGKA 544
Query: 508 IVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSL 566
+ NIAR+VP GLL+FFPSY +M++ + W+ + G + E + KP+ VEPR
Sbjct: 545 LGNIARVVPHGLLVFFPSYPVMEKSLEFWQ--AQGMSKKV-EAL----KPLFVEPRNKGS 597
Query: 567 FPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVR 626
F I+ Y ++ ++GA F AVCRGK SEGLDF+D GR V++TG+P+ DP+V
Sbjct: 598 FSEVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVI 657
Query: 627 LKREYLD-LQAQSQ-GGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIF 684
LK ++LD ++ +S+ GG+ LSG++WY QQASRAVNQA+GRVIRHRHDYGAI
Sbjct: 658 LKMQFLDEMKGRSRVGGQC-------LSGQEWYQQQASRAVNQAIGRVIRHRHDYGAIFL 710
Query: 685 CDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
CD RFA+ ++ + W++P+++ Y FG V+ + +FFR
Sbjct: 711 CDHRFAYADARAHLPSWVRPYLKVYDNFGRVIRDVAQFFR 750
Score = 648 (233.2 bits), Expect = 3.0e-62, Sum P(2) = 3.0e-62
Identities = 153/407 (37%), Positives = 225/407 (55%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP + G+ V+FPF+ Y CQ YM KV++ LQ K N +LESPTGTGKTLCLLC TLAWR
Sbjct: 1 MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWR 60
Query: 61 KSL-GSFSTL-----------XXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLR 108
+ L + S+L +P I+Y SRTHSQL
Sbjct: 61 EHLRDAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLT 120
Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSR 167
QVI EL+ ++YRPK+ +LGSREQLCIH EV + Q + CR KK +R C+ ++
Sbjct: 121 QVIGELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCR---KKVASRSCHFYNN 177
Query: 168 VADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRK 227
V + L +DIEDLV G CPY+++R L++ DI+F PYNYL+D RK
Sbjct: 178 VEEKSLEQ-ELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRK 236
Query: 228 GLGVEWKNSILIFDEAHNLEGICADAASFDLS-----SGL--LTACISEAKNCIDISSTR 280
++ K +++IFDEAHN+E IC ++ASFDL+ SGL + + E +
Sbjct: 237 AHNIDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQ 296
Query: 281 RG---QSSDETLNPD--NFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLN 335
+ +S LN + + A L+ +LL LE+ I V + + G TKPG YI+EL A+
Sbjct: 297 QEFIIDTSSSGLNMELEDIAKLKMILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQ 356
Query: 336 ITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
IT +T +++ ++ +++Q + T ++ + +I++I+F
Sbjct: 357 ITFQTKGCILESLD---QIIQHLTGRTGVFTNTAGLQKLMDIIQIVF 400
Score = 63 (27.2 bits), Expect = 5.4e-86, Sum P(2) = 5.4e-86
Identities = 22/101 (21%), Positives = 41/101 (40%)
Query: 933 RIEAEIQSEKSKG---SHSSAPPCGGEETKGSAFLIQVQEKLSATEYKEFVGFXXXXXXX 989
R+ E + K K +H P G + + F++ V++ LS + F
Sbjct: 866 RLSVEQRGGKKKVRLVNHPEEPVAGTQAGRAKMFMVAVKQALSQANFDTFTQ-ALQHYKS 924
Query: 990 XXXISHVLQSIAKLFA-GPERLPLLRRFKDYVPAKYHPLYE 1029
++ S+ LFA P++ LL+ F +V + +E
Sbjct: 925 SDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHHKQQFE 965
Score = 51 (23.0 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 993 ISHVLQSIAKLF-AGPERLPLLRRFKDYVPAKYHPLYEQ 1030
+ VL +A L A PE L LL+RF ++ + P + Q
Sbjct: 1040 LDKVLAVVAALTTAKPEHLSLLQRFGMFIRRHHKPRFVQ 1078
>MGI|MGI:2139369 [details] [associations]
symbol:Rtel1 "regulator of telomere elongation helicase 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2139369
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 GO:GO:0000723 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
KO:K11136 CTD:51750 EMBL:AY481619 EMBL:AY481620 EMBL:AY481621
EMBL:AY481622 EMBL:AY481623 EMBL:AK173097 EMBL:AK145145
EMBL:AL928965 EMBL:BC105578 EMBL:BC144977 EMBL:BC144978
EMBL:BC145658 IPI:IPI00274165 IPI:IPI00467288 IPI:IPI00754466
IPI:IPI00756345 IPI:IPI00756903 IPI:IPI00929860
RefSeq:NP_001001882.3 RefSeq:NP_001160137.1 RefSeq:NP_001160138.1
RefSeq:NP_001160139.1 RefSeq:NP_001160140.1 UniGene:Mm.11333
ProteinModelPortal:Q0VGM9 SMR:Q0VGM9 STRING:Q0VGM9
PhosphoSite:Q0VGM9 PRIDE:Q0VGM9 Ensembl:ENSMUST00000048608
Ensembl:ENSMUST00000054622 Ensembl:ENSMUST00000098971
Ensembl:ENSMUST00000108814 Ensembl:ENSMUST00000108815
Ensembl:ENSMUST00000148252 GeneID:269400 KEGG:mmu:269400
UCSC:uc008olu.2 UCSC:uc008olv.2 UCSC:uc008olw.2 UCSC:uc008olx.2
UCSC:uc012cmk.1 UCSC:uc012cml.1 InParanoid:Q6H1L3 OMA:VLKMQFL
ChiTaRS:RTEL1 NextBio:392832 Bgee:Q0VGM9 Genevestigator:Q0VGM9
Uniprot:Q0VGM9
Length = 1203
Score = 819 (293.4 bits), Expect = 3.4e-85, Sum P(2) = 3.4e-85
Identities = 182/458 (39%), Positives = 271/458 (59%)
Query: 284 SSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYK 343
SS + ++ A L+ +LL+LE+ I V + + G TKPG YI+EL A+ IT +T
Sbjct: 305 SSGLNMELEDIAKLKMILLRLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKGC 364
Query: 344 LIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAY-------YRVH 396
+++ ++ + L + ++ I I+ + +G+ S Y+VH
Sbjct: 365 ILESLDQIIQHLAGRTGVFTNTAGLQKLMDIIQIVFSVDPPEGSPGSLVGLGISHSYKVH 424
Query: 397 VR-EAD----ANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSP 447
+ E A +D ASR LS+WCF+P +M+E V ++ILTSGTL+P
Sbjct: 425 IHPETSHRRAAKRSDAWSTTASRKQGKVLSYWCFSPSQSMRELVCQGVRTLILTSGTLAP 484
Query: 448 MDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNT 507
+ SFA E+++ FP+ +ENPH+I Q+W GIVP GP G L+S+Y R S E LG
Sbjct: 485 LSSFALEMQIPFPVCLENPHIIDKNQLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKA 544
Query: 508 IVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSL 566
+ NIAR+VP GLL+FFPSY +M++ + W+ G + E + KP+ VEPR
Sbjct: 545 LSNIARVVPHGLLVFFPSYPVMEKSLEFWQ--VQGLARKV-EAL----KPLFVEPRNKGS 597
Query: 567 FPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVR 626
F I+ Y ++ +++GA F AVCRGK SEGLDF+D GR V++TG+P+ DP+V
Sbjct: 598 FSEVIDAYYQQVASPASNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVV 657
Query: 627 LKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCD 686
LK ++LD + + + G + LSG++WY QQASRAVNQA+GRVIRHRHDYGAI CD
Sbjct: 658 LKMQFLD-EMRGRSGVGGQC----LSGQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCD 712
Query: 687 ERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
RFA+ ++Q+ W++P+++ Y FG V+ + +FFR
Sbjct: 713 HRFAYADARAQLPSWVRPYLKVYDNFGHVIRDVAQFFR 750
Score = 649 (233.5 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 150/408 (36%), Positives = 234/408 (57%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP + G+ V+FPF+ Y CQ YM KV++ LQ K N +LESPTGTGKTLCLLC+TLAW+
Sbjct: 1 MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQ 60
Query: 61 KSL-GSFSTL-----------XXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLR 108
+ L + S+L +P I+Y SRTHSQL
Sbjct: 61 QHLRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLT 120
Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSR 167
QVI+EL+ + YRPK+ +LGSREQLCIH EV + Q + CR KK +R C+ ++
Sbjct: 121 QVIRELRNTAYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCR---KKVASRSCHFYNN 177
Query: 168 V-ADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFR 226
V A +++ + L +DIEDLV G CPY+++R +++ DI+F PYNYL+D R
Sbjct: 178 VEAKFLEQD--LATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLDAKSR 235
Query: 227 KGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISS--TRRGQ- 283
K ++ K +++IFDEAHN+E IC ++ASFDL+ + + + ++ + T++G+
Sbjct: 236 KAHSIDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLEEQARVTQQGEL 295
Query: 284 -------SSDETLNPD--NFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADL 334
+S LN + + A L+ +LL+LE+ I V + + G TKPG YI+EL A+
Sbjct: 296 QQEFIVDTSSSGLNMELEDIAKLKMILLRLEEAIDAVQLPGDDRGVTKPGSYIFELFAEA 355
Query: 335 NITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
IT +T +++ ++ +++Q + T ++ + +I++I+F
Sbjct: 356 QITFQTKGCILESLD---QIIQHLAGRTGVFTNTAGLQKLMDIIQIVF 400
Score = 61 (26.5 bits), Expect = 3.4e-85, Sum P(2) = 3.4e-85
Identities = 18/85 (21%), Positives = 35/85 (41%)
Query: 946 SHSSAPPCGGEETKGSAFLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLFA 1005
+H P G + + F++ V++ LS + F ++ S+ LFA
Sbjct: 882 NHPEEPMAGTQAGRAKMFMVAVKQALSQANFDTFTQ-ALQHYKSSDDFEALVASLTCLFA 940
Query: 1006 -GPERLPLLRRFKDYVPAKYHPLYE 1029
P++ LL+ F +V + +E
Sbjct: 941 EDPKKHTLLKGFYQFVRPHHKQQFE 965
Score = 61 (26.5 bits), Expect = 3.4e-85, Sum P(2) = 3.4e-85
Identities = 26/94 (27%), Positives = 39/94 (41%)
Query: 943 SKG--SHSSAPPCGGEETKGSA---FLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVL 997
SKG SH + C E+ A +L V + L + + + V+
Sbjct: 1018 SKGHTSHCTKVGCAVEKPGQPAVSDYLSDVHKALGSASCNQLTA-ALRAYKQDDDLDKVV 1076
Query: 998 QSIAKLF-AGPERLPLLRRFKDYVPAKYHPLYEQ 1030
+A L A PE LPLL+RF +V + P + Q
Sbjct: 1077 AVVAALTTAKPEHLPLLQRFGMFVRRHHKPQFLQ 1110
>RGD|1306721 [details] [associations]
symbol:Rtel1 "regulator of telomere elongation helicase 1"
species:10116 "Rattus norvegicus" [GO:0000723 "telomere
maintenance" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;ISS]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0010569 "regulation of
double-strand break repair via homologous recombination"
evidence=ISO;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR006935
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF04851 Pfam:PF06733
Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 RGD:1306721 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0000723 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 EMBL:CH474066
HOGENOM:HOG000007558 KO:K11136 CTD:51750 OrthoDB:EOG412M4Q
EMBL:BC086436 IPI:IPI00781945 IPI:IPI00782143 RefSeq:NP_001178786.1
UniGene:Rn.98315 PRIDE:Q5RJZ1 GeneID:362288 KEGG:rno:362288
UCSC:RGD:1306721 NextBio:679364 ArrayExpress:Q5RJZ1
Genevestigator:Q5RJZ1 Uniprot:Q5RJZ1
Length = 1274
Score = 820 (293.7 bits), Expect = 3.9e-85, Sum P(2) = 3.9e-85
Identities = 183/460 (39%), Positives = 274/460 (59%)
Query: 284 SSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYK 343
SS + ++ A L+ +LL LE+ I V + + G TKPG YI+EL A+ IT +T
Sbjct: 305 SSGLNMELEDIAKLKMILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKGC 364
Query: 344 LIDIVEVAAELL--QEDKLQN----KKSTTACRIE-SISNILKIIFRDKGTAHSAYYRVH 396
+++ ++ + L + N +K +I S+ + G S +Y+VH
Sbjct: 365 ILESLDQIIQHLTGRTGVFTNTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHFYKVH 424
Query: 397 VR-EAD----ANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSP 447
+ E A +D ASR LS+WCF+P +M+E + V ++ILTSGTL+P
Sbjct: 425 IHPETSHRRAAQRSDAWSTTASRKQGKVLSYWCFSPSHSMRELVQQGVRTLILTSGTLAP 484
Query: 448 MDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNT 507
+ SFA E+++ FP+ +ENPH+I Q+W G++P GP G L+S+Y R S E LG
Sbjct: 485 LSSFALEMQIPFPVCLENPHIIDKNQLWVGVIPRGPDGVQLSSAYDKRFSEECLSSLGKA 544
Query: 508 IVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSL 566
+ NIAR+VP GLL+FFPSY +M++ + W+ + G + E + KP+ VEPR
Sbjct: 545 LGNIARVVPHGLLVFFPSYPVMEKSLEFWQ--AQGMSKKV-EAL----KPLFVEPRNKGS 597
Query: 567 FPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVR 626
F I+ Y ++ ++GA F AVCRGK SEGLDF+D GR V++TG+P+ DP+V
Sbjct: 598 FSEVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVI 657
Query: 627 LKREYLD-LQAQSQ-GGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIF 684
LK ++LD ++ +S+ GG+ LSG++WY QQASRAVNQA+GRVIRHRHDYGAI
Sbjct: 658 LKMQFLDEMKGRSRVGGQC-------LSGQEWYQQQASRAVNQAIGRVIRHRHDYGAIFL 710
Query: 685 CDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
CD RFA+ ++ + W++P+++ Y FG V+ + +FFR
Sbjct: 711 CDHRFAYADARAHLPSWVRPYLKVYDNFGRVIRDVAQFFR 750
Score = 648 (233.2 bits), Expect = 4.5e-62, Sum P(2) = 4.5e-62
Identities = 153/407 (37%), Positives = 225/407 (55%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP + G+ V+FPF+ Y CQ YM KV++ LQ K N +LESPTGTGKTLCLLC TLAWR
Sbjct: 1 MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWR 60
Query: 61 KSL-GSFSTL-----------XXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLR 108
+ L + S+L +P I+Y SRTHSQL
Sbjct: 61 EHLRDAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLT 120
Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSR 167
QVI EL+ ++YRPK+ +LGSREQLCIH EV + Q + CR KK +R C+ ++
Sbjct: 121 QVIGELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCR---KKVASRSCHFYNN 177
Query: 168 VADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRK 227
V + L +DIEDLV G CPY+++R L++ DI+F PYNYL+D RK
Sbjct: 178 VEEKSLEQ-ELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRK 236
Query: 228 GLGVEWKNSILIFDEAHNLEGICADAASFDLS-----SGL--LTACISEAKNCIDISSTR 280
++ K +++IFDEAHN+E IC ++ASFDL+ SGL + + E +
Sbjct: 237 AHNIDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQ 296
Query: 281 RG---QSSDETLNPD--NFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLN 335
+ +S LN + + A L+ +LL LE+ I V + + G TKPG YI+EL A+
Sbjct: 297 QEFIIDTSSSGLNMELEDIAKLKMILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQ 356
Query: 336 ITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
IT +T +++ ++ +++Q + T ++ + +I++I+F
Sbjct: 357 ITFQTKGCILESLD---QIIQHLTGRTGVFTNTAGLQKLMDIIQIVF 400
Score = 64 (27.6 bits), Expect = 3.9e-85, Sum P(2) = 3.9e-85
Identities = 26/94 (27%), Positives = 39/94 (41%)
Query: 943 SKGSHSSAPP--CGGEETKGSA---FLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVL 997
SKG S+ P C GE+ A +L V + L + + + VL
Sbjct: 1035 SKGDTSNCPKVGCVGEKPGQPAVNDYLSDVHKALGSASCNQLTA-ALRAYKQDDDLDKVL 1093
Query: 998 QSIAKLF-AGPERLPLLRRFKDYVPAKYHPLYEQ 1030
+A L A PE L LL+RF ++ + P + Q
Sbjct: 1094 AVVAALTTAKPEHLSLLQRFGMFIRRHHKPRFVQ 1127
Score = 63 (27.2 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
Identities = 22/101 (21%), Positives = 41/101 (40%)
Query: 933 RIEAEIQSEKSKG---SHSSAPPCGGEETKGSAFLIQVQEKLSATEYKEFVGFXXXXXXX 989
R+ E + K K +H P G + + F++ V++ LS + F
Sbjct: 866 RLSVEQRGGKKKVRLVNHPEEPVAGTQAGRAKMFMVAVKQALSQANFDTFTQ-ALQHYKS 924
Query: 990 XXXISHVLQSIAKLFA-GPERLPLLRRFKDYVPAKYHPLYE 1029
++ S+ LFA P++ LL+ F +V + +E
Sbjct: 925 SDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHHKQQFE 965
>UNIPROTKB|Q6H1L8 [details] [associations]
symbol:Rtel1 "Regulator of telomere elongation helicase 1"
species:10096 "Mus spretus" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=ISS]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 MGI:MGI:2139369
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
GO:GO:0000723 GO:GO:0010569 TIGRFAMs:TIGR00604 EMBL:AY481613
EMBL:AY481614 EMBL:AY481615 EMBL:AY481616 EMBL:AY481617
EMBL:AY530632 ProteinModelPortal:Q6H1L8 Uniprot:Q6H1L8
Length = 1203
Score = 805 (288.4 bits), Expect = 1.1e-83, Sum P(2) = 1.1e-83
Identities = 180/458 (39%), Positives = 268/458 (58%)
Query: 284 SSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYK 343
SS + ++ A L+ +LL+LE+ I V + + G TKPG YI+EL A+ IT +T
Sbjct: 305 SSGLNMELEDIAKLKMILLRLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKGC 364
Query: 344 LIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAY-------YRVH 396
+++ ++ + L + ++ I I+ + +G+ S Y+VH
Sbjct: 365 ILESLDQIIQHLAGRTGVFTNTAGLQKLMDIIQIVFSVDPPEGSPGSLVGLGISHSYKVH 424
Query: 397 VR-EAD----ANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSP 447
+ E A +D ASR LS+WCF+P +M+E V ++ILTSGTL+P
Sbjct: 425 IHPETSHRRAAKRSDAWSTTASRKQGKVLSYWCFSPSQSMRELVCQGVRTLILTSGTLAP 484
Query: 448 MDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNT 507
+ SFA E ++ FP+ +ENPH+I Q+W GIVP GP G L+S+Y R S E LG
Sbjct: 485 LSSFALEKQIPFPVCLENPHIIDKNQLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKA 544
Query: 508 IVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSL 566
+ NIAR+VP GLL+FFPSY +M++ + W+ G + E + KP+ VEPR
Sbjct: 545 LSNIARVVPHGLLVFFPSYPVMEKSLEFWQ--VQGLARKV-EAL----KPLFVEPRNKGS 597
Query: 567 FPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVR 626
F I+ Y ++ +++GA F AVCRGK SEGLDF+D GR V++TG+P+ DP+V
Sbjct: 598 FSEVIDAYYQQVASPASNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVV 657
Query: 627 LKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCD 686
LK ++LD + + + G + LSG++WY QQASRAVNQA+GRVIRHRHDYGAI CD
Sbjct: 658 LKMQFLD-EMRGRSGVGGQC----LSGQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCD 712
Query: 687 ERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
RFA+ ++Q+ W++P+++ Y FG + + +F R
Sbjct: 713 HRFAYADARAQLPSWVRPYLKVYDNFGHAIRDVAQFLR 750
Score = 643 (231.4 bits), Expect = 1.9e-61, Sum P(2) = 1.9e-61
Identities = 149/408 (36%), Positives = 233/408 (57%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP + G+ V+FPF+ Y CQ YM KV++ LQ K N +LESPTGTGKTLCLLC+TLAW+
Sbjct: 1 MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQ 60
Query: 61 KSL-GSFSTL-----------XXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLR 108
+ L + S+L +P I+Y SRTHSQ
Sbjct: 61 QHLRDAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPT 120
Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSR 167
QVI+EL+ + YRPK+ +LGSREQLCIH EV + Q + CR KK +R C+ ++
Sbjct: 121 QVIRELRNTAYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCR---KKVASRSCHFYNN 177
Query: 168 V-ADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFR 226
V A +++ + L +DIEDLV G CPY+++R +++ DI+F PYNYL+D R
Sbjct: 178 VEAKFLEQD--LATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLDAKSR 235
Query: 227 KGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISS--TRRGQ- 283
K ++ K +++IFDEAHN+E IC ++ASFDL+ + + + ++ + T++G+
Sbjct: 236 KAHSIDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLEEQARVTQQGEL 295
Query: 284 -------SSDETLNPD--NFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADL 334
+S LN + + A L+ +LL+LE+ I V + + G TKPG YI+EL A+
Sbjct: 296 QQEFIVDTSSSGLNMELEDIAKLKMILLRLEEAIDAVQLPGDDRGVTKPGSYIFELFAEA 355
Query: 335 NITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
IT +T +++ ++ +++Q + T ++ + +I++I+F
Sbjct: 356 QITFQTKGCILESLD---QIIQHLAGRTGVFTNTAGLQKLMDIIQIVF 400
Score = 62 (26.9 bits), Expect = 1.1e-83, Sum P(2) = 1.1e-83
Identities = 22/105 (20%), Positives = 42/105 (40%)
Query: 933 RIEAEIQSEKSKG-------SHSSAPPCGGEETKGSAFLIQVQEKLSATEYKEFVGFXXX 985
R E + +E+ G +H P G + + F++ V++ LS + F
Sbjct: 862 RFEKRLSTEQKGGRKKVRLVNHPEEPMAGTQAGRAKMFMVAVKQALSQANFDTFTQ-ALQ 920
Query: 986 XXXXXXXISHVLQSIAKLFA-GPERLPLLRRFKDYVPAKYHPLYE 1029
++ S+ LFA P++ LL+ F +V + +E
Sbjct: 921 HYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHHKQQFE 965
Score = 61 (26.5 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
Identities = 26/94 (27%), Positives = 39/94 (41%)
Query: 943 SKG--SHSSAPPCGGEETKGSA---FLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVL 997
SKG SH + C E+ A +L V + L + + + V+
Sbjct: 1018 SKGHTSHCTKVGCAVEKPGQPAVSDYLSDVHKALGSASCNQLTA-ALRAYKQDDDLDKVV 1076
Query: 998 QSIAKLF-AGPERLPLLRRFKDYVPAKYHPLYEQ 1030
+A L A PE LPLL+RF +V + P + Q
Sbjct: 1077 AVVAALTTAKPEHLPLLQRFGMFVRRHHKPQFLQ 1110
>UNIPROTKB|F1MMS0 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006357
GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
OMA:GVHKISD EMBL:DAAA02048371 IPI:IPI00923893
Ensembl:ENSBTAT00000061499 Uniprot:F1MMS0
Length = 1164
Score = 564 (203.6 bits), Expect = 2.9e-77, Sum P(3) = 2.9e-77
Identities = 123/326 (37%), Positives = 196/326 (60%)
Query: 408 LKGKAS-RTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENP 466
L+ KA+ R L++WC NP +A + + +V +I+LTSGTLSPM SF+ EL + F +++E
Sbjct: 515 LRQKAAVRVLNFWCLNPAVAFSDING-KVWAIVLTSGTLSPMKSFSSELGVTFTIQLEAN 573
Query: 467 HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSY 526
HVI + Q+W G + GP G L +++++ ++ E++ E+G ++++ + + G+L F PSY
Sbjct: 574 HVINNSQVWVGTIGSGPKGRSLCATFQHTETFEFQDEVGALLLSVCQTISQGILCFLPSY 633
Query: 527 YLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSL--FPLAIEDYMAKLK-DTST 583
L+++ W +T +W + K +VEP+ F ++ Y +K
Sbjct: 634 KLLEKLKERWLSTG------LWYNLELVKTVIVEPQGGEKIDFDELLQMYYDAIKYKGEK 687
Query: 584 SGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEY 643
GA+ AVCRGKVSEGLDF+D RAVV G+PF + D +V LKR+Y D ++ +G
Sbjct: 688 DGALLVAVCRGKVSEGLDFSDDNARAVVTIGIPFPNVKDLQVELKRQYNDQHSKLRG--- 744
Query: 644 KETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF-AHPSRK-SQISLW 701
L G WY QA RA+NQA+GR IRH++D+GA+I D+RF ++PSR S +S W
Sbjct: 745 ------LLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKW 798
Query: 702 IQPHIQCYSKFGDVVYTLTRFFREER 727
++ IQ +S F + +L F ++ +
Sbjct: 799 VRQLIQHHSTFESALESLAEFAKKHQ 824
Score = 286 (105.7 bits), Expect = 2.9e-77, Sum P(3) = 2.9e-77
Identities = 63/194 (32%), Positives = 104/194 (53%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K+P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV + +N C
Sbjct: 178 KIPKIYFGTRTHKQIAQITRELQRTAYSGVPMTILSSRDHTCVHPEV--MGNFNRNEKCM 235
Query: 152 FLCKKGTNRRCN-HHS--RVADYMKNNPHLG-DEPIDIEDLVNIGRTFGPCPYFMTRELQ 207
L + C +H +++D G + DIE+LV++GR CPY+ REL
Sbjct: 236 ELLDGKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELM 295
Query: 208 KTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACI 267
+ DI+F PYNYL+D R+ + + K ++I DEAHN+E ++AS+ ++ L
Sbjct: 296 QNADIIFCPYNYLLDAQIRETMDINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFAR 355
Query: 268 SEAKNCIDISSTRR 281
E + I+ + ++
Sbjct: 356 DELDSMINYNIRKK 369
Score = 57 (25.1 bits), Expect = 2.9e-77, Sum P(3) = 2.9e-77
Identities = 33/136 (24%), Positives = 49/136 (36%)
Query: 724 REERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQACYSLHEVKNR- 782
+ E I STN+ +L V + S + S T A D++ Y E+ +
Sbjct: 1001 QSETIVPSTNVDAANLNSEDPAIQLSVVSEEAEPSPSNIASETEAEDESIYFTPELYDPV 1060
Query: 783 NTSSHSGEIVPANRSSLSPYKGIWASELKNSSDLIQFEKKLLLSGRKSIQ-YRDHEFIDL 841
T+ E+V R S L NSS+ I E + K + R+ E D
Sbjct: 1061 ETNEEKNELVGTERDS----------RLTNSSNGILTEDLFEIKTTKGVDSVREMEAEDC 1110
Query: 842 TSNSSLHAKPRKEELI 857
T P KE +
Sbjct: 1111 TDTKLKRLMPIKESKV 1126
Score = 45 (20.9 bits), Expect = 5.3e-76, Sum P(3) = 5.3e-76
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 941 EKSKGSHSSAPPCGGEETKGSAFLIQVQEKLSATEY 976
E K S P GG +K S + ++ LS EY
Sbjct: 832 EDRKSIQGSEPTLGGACSKDSTYFLEAASHLSP-EY 866
>UNIPROTKB|E1BNG9 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:DAAA02048371 IPI:IPI00923893
Ensembl:ENSBTAT00000048969 Uniprot:E1BNG9
Length = 1098
Score = 564 (203.6 bits), Expect = 3.1e-76, Sum P(3) = 3.1e-76
Identities = 123/326 (37%), Positives = 196/326 (60%)
Query: 408 LKGKAS-RTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENP 466
L+ KA+ R L++WC NP +A + + +V +I+LTSGTLSPM SF+ EL + F +++E
Sbjct: 515 LRQKAAVRVLNFWCLNPAVAFSDING-KVWAIVLTSGTLSPMKSFSSELGVTFTIQLEAN 573
Query: 467 HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSY 526
HVI + Q+W G + GP G L +++++ ++ E++ E+G ++++ + + G+L F PSY
Sbjct: 574 HVINNSQVWVGTIGSGPKGRSLCATFQHTETFEFQDEVGALLLSVCQTISQGILCFLPSY 633
Query: 527 YLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSL--FPLAIEDYMAKLK-DTST 583
L+++ W +T +W + K +VEP+ F ++ Y +K
Sbjct: 634 KLLEKLKERWLSTG------LWYNLELVKTVIVEPQGGEKIDFDELLQMYYDAIKYKGEK 687
Query: 584 SGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEY 643
GA+ AVCRGKVSEGLDF+D RAVV G+PF + D +V LKR+Y D ++ +G
Sbjct: 688 DGALLVAVCRGKVSEGLDFSDDNARAVVTIGIPFPNVKDLQVELKRQYNDQHSKLRG--- 744
Query: 644 KETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF-AHPSRK-SQISLW 701
L G WY QA RA+NQA+GR IRH++D+GA+I D+RF ++PSR S +S W
Sbjct: 745 ------LLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKW 798
Query: 702 IQPHIQCYSKFGDVVYTLTRFFREER 727
++ IQ +S F + +L F ++ +
Sbjct: 799 VRQLIQHHSTFESALESLAEFAKKHQ 824
Score = 286 (105.7 bits), Expect = 3.1e-76, Sum P(3) = 3.1e-76
Identities = 63/194 (32%), Positives = 104/194 (53%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K+P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV + +N C
Sbjct: 178 KIPKIYFGTRTHKQIAQITRELQRTAYSGVPMTILSSRDHTCVHPEV--MGNFNRNEKCM 235
Query: 152 FLCKKGTNRRCN-HHS--RVADYMKNNPHLG-DEPIDIEDLVNIGRTFGPCPYFMTRELQ 207
L + C +H +++D G + DIE+LV++GR CPY+ REL
Sbjct: 236 ELLDGKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELM 295
Query: 208 KTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACI 267
+ DI+F PYNYL+D R+ + + K ++I DEAHN+E ++AS+ ++ L
Sbjct: 296 QNADIIFCPYNYLLDAQIRETMDINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFAR 355
Query: 268 SEAKNCIDISSTRR 281
E + I+ + ++
Sbjct: 356 DELDSMINYNIRKK 369
Score = 51 (23.0 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 54/278 (19%), Positives = 103/278 (37%)
Query: 538 NTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVS 597
+T L ++ E KH+K + ++ +I+ L + + +F +S
Sbjct: 807 STFESALESLAEFAKKHQKVIAASKEDRK---SIQGSEPTLGGACSKDSTYFLEAASHLS 863
Query: 598 EGLDFADHAGRAVVITGMPFATMTD--PKVRLKREY-----LDLQAQSQGGE----YKET 646
++A G+A + +P+ M + P +R+Y L+ AQ+ G E + T
Sbjct: 864 P--EYAME-GKAKMCLKLPYPKMINKSPSSPKRRKYNDPELLEESAQAVGAEGIVISRST 920
Query: 647 KLSFLSGEDWYNQQASRAVNQAV-GRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPH 705
+F D + S Q + G+++ ++ E A S + +
Sbjct: 921 SPTFSKQIDQVSWSGSNLGGQCLTGKILTGT----PMVRSSEDCASTSSTFKTEKKCETV 976
Query: 706 IQCYSKFGDVVYTLTRFF----REERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEE 761
+ K+ T+ F + E I STN+ +L V + S
Sbjct: 977 LLLTDKYESSSLTVDTSFGACPQSETIVPSTNVDAANLNSEDPAIQLSVVSEEAEPSPSN 1036
Query: 762 VPSSTPAVDQACYSLHEVKNR-NTSSHSGEIVPANRSS 798
+ S T A D++ Y E+ + T+ E+V R S
Sbjct: 1037 IASETEAEDESIYFTPELYDPVETNEEKNELVGTERDS 1074
Score = 45 (20.9 bits), Expect = 3.1e-76, Sum P(3) = 3.1e-76
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 941 EKSKGSHSSAPPCGGEETKGSAFLIQVQEKLSATEY 976
E K S P GG +K S + ++ LS EY
Sbjct: 832 EDRKSIQGSEPTLGGACSKDSTYFLEAASHLSP-EY 866
>RGD|1307659 [details] [associations]
symbol:Brip1 "BRCA1 interacting protein C-terminal helicase 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=ISO]
[GO:0071295 "cellular response to vitamin" evidence=IEP]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0008285 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
IPI:IPI00781914 Ensembl:ENSRNOT00000055817 ArrayExpress:D4AD12
GO:GO:0071295 Uniprot:D4AD12
Length = 818
Score = 551 (199.0 bits), Expect = 4.8e-73, Sum P(4) = 4.8e-73
Identities = 118/317 (37%), Positives = 189/317 (59%)
Query: 416 LSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIW 475
L++WC NP +A + + +V +I+LTSGTLSP+ SF+ EL + F +++E HVI++ Q+W
Sbjct: 512 LNFWCLNPAVAFSDIND-KVRTIVLTSGTLSPLKSFSSELGVTFNIQLEANHVISNSQVW 570
Query: 476 AGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIAC 535
G V GP G L +++++ ++ E++ E+G ++++ + V G+L F PSY L+++
Sbjct: 571 VGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKLRER 630
Query: 536 WKNTSHGNLTTIWERICKHKKPVVEPR--QSSLFPLAIEDYMAKLK-DTSTSGAVFFAVC 592
W T +W + K + EP+ + + F ++ Y +K GA+ AVC
Sbjct: 631 WI------FTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVC 684
Query: 593 RGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLS 652
RGKVSEGLDF+D RAV+ G+PF + D +V LKR+Y D ++ +G L
Sbjct: 685 RGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRG---------LLP 735
Query: 653 GEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAH-PSRK-SQISLWIQPHIQCYS 710
G WY QA RA+NQA+GR IRH++D+GA+I D+RF + P R S +S W++ IQ +S
Sbjct: 736 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFNNNPDRYISGLSKWVRQQIQHHS 795
Query: 711 KFGDVVYTLTRFFREER 727
F + +LT F + +
Sbjct: 796 TFASALESLTEFSKRHQ 812
Score = 162 (62.1 bits), Expect = 4.8e-73, Sum P(4) = 4.8e-73
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ + FP AY QL M +++ L + + LLESPTG+GK+L LLC+ LAW++SL
Sbjct: 8 YTIGGVKIHFPCRAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQSL 67
Score = 99 (39.9 bits), Expect = 4.8e-73, Sum P(4) = 4.8e-73
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREV 138
K P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV
Sbjct: 239 KRPKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHTCVHPEV 285
Score = 69 (29.3 bits), Expect = 4.8e-73, Sum P(4) = 4.8e-73
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 227 KGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRR 281
K + ++ K ++I DEAHN+E + AS+ ++ L E + I+ S+ R+
Sbjct: 302 KHMDIKLKEQVVILDEAHNIEECARETASYSVTEVQLRFARDELDSLIN-SNIRK 355
>WB|WBGene00001049 [details] [associations]
symbol:dog-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI;IMP] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IGI;IMP] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0000003 GO:GO:0004003 GO:GO:0000723
GO:GO:0006289 GO:GO:0043570 eggNOG:COG1199
GeneTree:ENSGT00530000063199 GO:GO:0090329 KO:K15362 EMBL:Z81526
PIR:T21711 RefSeq:NP_493618.1 ProteinModelPortal:O62217 SMR:O62217
STRING:O62217 PaxDb:O62217 EnsemblMetazoa:F33H2.1.1
EnsemblMetazoa:F33H2.1.2 GeneID:173370 KEGG:cel:CELE_F33H2.1
UCSC:F33H2.1 CTD:173370 WormBase:F33H2.1 HOGENOM:HOG000021716
InParanoid:O62217 OMA:EKELDDS NextBio:879367 Uniprot:O62217
Length = 983
Score = 469 (170.2 bits), Expect = 5.1e-69, Sum P(3) = 5.1e-69
Identities = 114/313 (36%), Positives = 170/313 (54%)
Query: 415 TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQI 474
T+S WC +P ++ + E SI+L SGTL PMD+ EL + F +VE VI I
Sbjct: 661 TISLWCMSPALSFFDAFN-ETRSIVLASGTLCPMDTLKTELGMEFKQQVEGDQVINKDNI 719
Query: 475 WAGIVPVGPSGYLLNSSYRNRDSIE--YKQELGNTIVNIARIVPDGLLIFFPSYYLMDQC 532
+A ++P+GP G + +YRN E + ELG I + VP G+L F PSY ++DQ
Sbjct: 720 FAAVLPIGPFGNRIQCTYRNTSDPESSFYCELGAIIKYVCSNVPAGILCFLPSYRVLDQL 779
Query: 533 IACWKNTSHGNLTTIWERICKHKKPVV-EPRQSSLFPLAIEDYMAKLKDTSTSGA----- 586
C S T+ R + KK V+ EPR+SS ++ + A + D S GA
Sbjct: 780 KQCMIRNS-----TM--RQIEMKKVVLYEPRRSSELTSVMDQFDAAIFDPSRFGANINGS 832
Query: 587 VFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKET 646
+ FAV RGKVSEG+DFAD R V+ G+P+ D +V K+ Y D ++ +G
Sbjct: 833 LMFAVFRGKVSEGIDFADDRARVVISVGIPYPNAMDDQVNAKKLYNDQNSKEKG------ 886
Query: 647 KLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPS-------RKSQIS 699
L+G++WY QA RA+NQA+GR +RH++D+GA++ DER + +++S
Sbjct: 887 ---ILTGDEWYTTQAYRALNQALGRCLRHKNDWGAMLMIDERLERQTGNLVGGASSARVS 943
Query: 700 LWIQPHIQCYSKF 712
WI+ ++ Y F
Sbjct: 944 KWIRAQLKSYPSF 956
Score = 251 (93.4 bits), Expect = 5.1e-69, Sum P(3) = 5.1e-69
Identities = 82/238 (34%), Positives = 115/238 (48%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCI------HREVSLLR---GSA 145
I Y +RTH Q+ QV++E Y K IL SREQ CI H ++S SA
Sbjct: 240 IYYGTRTHKQIAQVVKEFSRLPYAKILKHTILASREQSCINPAARKHADISQYCKEVNSA 299
Query: 146 QNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGP--CPYFMT 203
+ C F K R + D+++ N G D+E +V P CPYF T
Sbjct: 300 HSIGCSF--KSAMKPRFEKALPLRDHLERN---GTVVFDMEKIVETLAISYPQLCPYFST 354
Query: 204 -RELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASF-----D 257
R L + DI+F P++YL+DP R V+ +NSI+I DEAHN+E C +AASF +
Sbjct: 355 NRILTQDADIIFCPFSYLVDPLIRNSSDVQIRNSIVILDEAHNIEDTCREAASFSFTEKE 414
Query: 258 LSSGLLTACISEAKNCIDISSTRRGQSSDETLN-PDNFAIL---RALLLKLEKRIAEV 311
L +L+ I + +D + G ++ L+ PD L R LL LE I E+
Sbjct: 415 LDDSILSLRIK--RKAVDTELDKTG-IEEKLLHIPDREVHLKEFRGHLLYLEHLILEM 469
Score = 112 (44.5 bits), Expect = 5.1e-69, Sum P(3) = 5.1e-69
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 8 GIDVEFP--FEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRK 61
G+ V P Y Q + + +++ +L+N N L ESPTG+GKT+ LL +T AW K
Sbjct: 79 GVPVRVPRGLSLYSTQKLMIVRILTALKNSQNVLGESPTGSGKTMALLASTCAWLK 134
>UNIPROTKB|F1MWN6 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 IPI:IPI00905335 EMBL:DAAA02036222
Ensembl:ENSBTAT00000052120 OMA:THEKEDE Uniprot:F1MWN6
Length = 564
Score = 701 (251.8 bits), Expect = 6.0e-69, P = 6.0e-69
Identities = 164/400 (41%), Positives = 235/400 (58%)
Query: 289 LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIV 348
L P++ A L+ +LL+LE I V + G TKPG YI+EL A+ IT +T ++D +
Sbjct: 178 LEPEDLAKLKMILLRLEGAIDAVELPGDNSGVTKPGSYIFELFAEAQITFQTKGCILDSL 237
Query: 349 E-VAAELLQEDKLQNKKSTTACRIESISNILKIIFR--DKGTAH---SAYYRVHVR-EAD 401
+ + L L + ++ I + + D G S Y+VH+ +A
Sbjct: 238 DQLIQHLAGRAGLFTNTAGLQKLVDIIQIVFSVDSAEGDPGPMMGLASQSYKVHIHLDAG 297
Query: 402 ----ANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQ 453
A +DV A+R LS+WCF+PG +M+E R V ++ILTSGTL+PM SF+
Sbjct: 298 HRRTAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSL 357
Query: 454 ELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIAR 513
E+++ FP+ +ENPHVI QIW G++P GP G L+S++ R S E LG + NI+R
Sbjct: 358 EMQIPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISR 417
Query: 514 IVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV-VEPRQSSLFPLAIE 572
+VP GLL+FFPSY +M++ + W+ + R + +KP+ VEPR F +E
Sbjct: 418 VVPHGLLVFFPSYPVMEKSLEFWRARD-------FTRKLEVRKPLFVEPRSKGGFSEVME 470
Query: 573 DYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYL 632
+ A++ +SGA+F AVCRGK SEGLDFAD GR V++TG+P+ DP+V LK ++L
Sbjct: 471 AFYARVAAPESSGAIFLAVCRGKASEGLDFADVNGRGVIVTGLPYPPRMDPRVLLKMQFL 530
Query: 633 D-LQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGR 671
D ++AQS G FLSG DWY QQASRAVNQA+GR
Sbjct: 531 DEMKAQSGAGG------QFLSGHDWYRQQASRAVNQAIGR 564
Score = 385 (140.6 bits), Expect = 7.1e-33, P = 7.1e-33
Identities = 95/274 (34%), Positives = 151/274 (55%)
Query: 122 KMVILGSREQLCIHREVSLLRGS-AQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGD 180
++ +LGSREQLCIH EV + Q + CR +K +R C+ ++ V + L
Sbjct: 2 RVCVLGSREQLCIHPEVKKQESNHMQVHLCR---RKVASRSCHFYNNVEEKSLEQ-ELAT 57
Query: 181 EPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIF 240
+DIEDLV G CPY+++R L++ DI+F PYNYL+D R+ G++ K +++IF
Sbjct: 58 PILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHGIDLKGTVVIF 117
Query: 241 DEAHNLEGICADAASFDLS-----SGL--LTACISEAKNCIDISSTRRGQSSDET----- 288
DEAHN+E +C +AASFDL+ SGL + + E + S+D
Sbjct: 118 DEAHNVEKMCEEAASFDLTPHDVASGLDVIDQVLEERTKVAQQAELHPEFSADSAGSGLN 177
Query: 289 LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIV 348
L P++ A L+ +LL+LE I V + G TKPG YI+EL A+ IT +T ++D +
Sbjct: 178 LEPEDLAKLKMILLRLEGAIDAVELPGDNSGVTKPGSYIFELFAEAQITFQTKGCILDSL 237
Query: 349 EVAAELLQEDKLQNKKSTTACRIESISNILKIIF 382
+ +L+Q + T ++ + +I++I+F
Sbjct: 238 D---QLIQHLAGRAGLFTNTAGLQKLVDIIQIVF 268
>UNIPROTKB|G3N0I3 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
EMBL:DAAA02048371 Ensembl:ENSBTAT00000065712 Uniprot:G3N0I3
Length = 756
Score = 564 (203.6 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 123/326 (37%), Positives = 196/326 (60%)
Query: 408 LKGKAS-RTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENP 466
L+ KA+ R L++WC NP +A + + +V +I+LTSGTLSPM SF+ EL + F +++E
Sbjct: 441 LRQKAAVRVLNFWCLNPAVAFSDING-KVWAIVLTSGTLSPMKSFSSELGVTFTIQLEAN 499
Query: 467 HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSY 526
HVI + Q+W G + GP G L +++++ ++ E++ E+G ++++ + + G+L F PSY
Sbjct: 500 HVINNSQVWVGTIGSGPKGRSLCATFQHTETFEFQDEVGALLLSVCQTISQGILCFLPSY 559
Query: 527 YLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSL--FPLAIEDYMAKLK-DTST 583
L+++ W +T +W + K +VEP+ F ++ Y +K
Sbjct: 560 KLLEKLKERWLSTG------LWYNLELVKTVIVEPQGGEKIDFDELLQMYYDAIKYKGEK 613
Query: 584 SGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEY 643
GA+ AVCRGKVSEGLDF+D RAVV G+PF + D +V LKR+Y D ++ +G
Sbjct: 614 DGALLVAVCRGKVSEGLDFSDDNARAVVTIGIPFPNVKDLQVELKRQYNDQHSKLRG--- 670
Query: 644 KETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF-AHPSRK-SQISLW 701
L G WY QA RA+NQA+GR IRH++D+GA+I D+RF ++PSR S +S W
Sbjct: 671 ------LLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKW 724
Query: 702 IQPHIQCYSKFGDVVYTLTRFFREER 727
++ IQ +S F + +L F ++ +
Sbjct: 725 VRQLIQHHSTFESALESLAEFAKKHQ 750
Score = 105 (42.0 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K+P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV + +N C
Sbjct: 178 KIPKIYFGTRTHKQIAQITRELQRTAYSGVPMTILSSRDHTCVHPEV--MGNFNRNEKCM 235
Query: 152 FLCKKGTNRRCNHHSRV 168
L G N N +V
Sbjct: 236 ELLD-GKNMDINLKEQV 251
Score = 71 (30.1 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 227 KGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRR 281
K + + K ++I DEAHN+E ++AS+ ++ L E + I+ + ++
Sbjct: 241 KNMDINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMINYNIRKK 295
>POMBASE|SPAC3G6.11 [details] [associations]
symbol:chl1 "ATP-dependent DNA helicase Chl1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006342
"chromatin silencing" evidence=NAS] [GO:0007064 "mitotic sister
chromatid cohesion" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 PomBase:SPAC3G6.11 INTERPRO:IPR013020 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0006342 GO:GO:0007064
GO:GO:0045910 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 PIR:T38730 RefSeq:NP_594977.1
ProteinModelPortal:O14147 STRING:O14147 EnsemblFungi:SPAC3G6.11.1
GeneID:2543118 KEGG:spo:SPAC3G6.11 HOGENOM:HOG000241266 OMA:NLGRCVV
OrthoDB:EOG408RH6 NextBio:20804145 Uniprot:O14147
Length = 844
Score = 612 (220.5 bits), Expect = 3.4e-67, Sum P(2) = 3.4e-67
Identities = 190/660 (28%), Positives = 325/660 (49%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYR----P-KMVILGSREQLCIHREVSLLRG-SAQNNAC 150
I +TSRTHSQL+Q++QE+K N + P ++V L SR+ LCI+ EV LR SA N C
Sbjct: 214 IYFTSRTHSQLQQLVQEIKKLNNQTFSTPIRVVSLASRKNLCINNEVRKLRPTSALNEKC 273
Query: 151 RFLCKKGTNRRC---NHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQ 207
L +G+ +C ++++ D+ + L E +DIE+LV +G+ CPY+ TRE
Sbjct: 274 IEL--QGSAHKCPFLQDNTQLWDF--RDEALA-EIMDIEELVELGQRLKVCPYYGTREAV 328
Query: 208 KTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNL-EGICADAASFDLSSGLLTAC 266
+ IV PY L+ R L + K++I I DEAHNL + IC+ +S S C
Sbjct: 329 DSAQIVTLPYPLLLQESARNALNLTLKDNICIIDEAHNLIDAICSMHSS---SISFRQVC 385
Query: 267 ISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPY 326
I+E + + R ++ LN +N ++ L+ K+ + +N E
Sbjct: 386 IAETQ--LQQYFLR----FEKRLNGNNRMHIKQLI-KVVYNLKSFFLNCLETNTNSKVIN 438
Query: 327 IYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACR-IESISNILKIIFRD- 384
+ LL Q + L + + V+ + D + + +ES++++ F +
Sbjct: 439 VDSLLVSNGADQINLHHLSEYLNVSKLARKVDGYTKYMHSLGTQELESLNDLRSERFSNG 498
Query: 385 KGTAHSAYYRVHVREAD--ANAADVL-KGKA---SRT-----LSWWCFNPGIAMQEFSRL 433
G Y V ++ N A+ +GK +T L + +P ++ +
Sbjct: 499 NGYEEDPYTPVLMQLESFLLNIANPAPEGKLFYEKQTGDNPYLKYLLLDPSKHVEILTE- 557
Query: 434 EVGSIILTSGTLSPMDSFAQELKLNFPLRV---ENPHVITSKQIWAGIVPVGPSGYLLNS 490
+ S+ L GT+SP+D F L + R+ H++ + I +V GP+G
Sbjct: 558 QCRSVNLAGGTMSPIDDFITLLFSDEQSRILPFSCDHIVPPENITTILVSQGPAGVPFEF 617
Query: 491 SYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWER 550
+++ +D ++LG T N I+PDG+++FFPS+ + Q + W+ + I R
Sbjct: 618 THKRKDDENLLKDLGRTFQNFISIIPDGVVVFFPSFAFLQQAVKVWE------MNGITNR 671
Query: 551 ICKHKKPV-VEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRA 609
+ KKP+ +E + PL ++ + D SG + F+V G++SEG++F+D GRA
Sbjct: 672 L-NAKKPLFIESKDFGDNPLDTFEHYKQSVDAGLSG-MLFSVIGGRLSEGINFSDKLGRA 729
Query: 610 VVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAV 669
V++ GMPF D + + K Y++ +A+ +G K+ + +++Y RAVNQ++
Sbjct: 730 VMVVGMPFPNSQDVEWQAKVSYVEEKAKEKGINAKQ------ASQEFYENTCMRAVNQSI 783
Query: 670 GRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERIC 729
GR IRHR DY +II D R+ S + ++ W+ +I FG + L FFR +++C
Sbjct: 784 GRAIRHRDDYASIILLDSRYNRSSIQRKLPNWLSKNIHSSPNFGPAIRQLATFFRAKKMC 843
Score = 124 (48.7 bits), Expect = 3.4e-67, Sum P(2) = 3.4e-67
Identities = 35/126 (27%), Positives = 52/126 (41%)
Query: 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGS--FSTLXX 71
P+ YD QL +M + S+ + + ESPTGTGK+L L+CA+L W G
Sbjct: 16 PYTPYDIQLEFMRSLYSSISDGKIGIFESPTGTGKSLSLICASLTWLDEHGGVLLEDNEK 75
Query: 72 XXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQ 131
K+ L TH++L Q ++E++ N K + S
Sbjct: 76 SNDNKSNTSSKIPDWVLEQDLKIQKDL-VKETHARLEQRLEEIRKRNQSRKNQM--SNNS 132
Query: 132 LCIHRE 137
HRE
Sbjct: 133 TTYHRE 138
>ZFIN|ZDB-GENE-041114-191 [details] [associations]
symbol:ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box
helicase 11" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-041114-191 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199
KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 HOVERGEN:HBG058884 OrthoDB:EOG4B5P4M CTD:1663
EMBL:BC085645 IPI:IPI00501779 RefSeq:NP_001007320.1
UniGene:Dr.37620 ProteinModelPortal:Q5U399 STRING:Q5U399
GeneID:492353 KEGG:dre:492353 InParanoid:Q5U399 NextBio:20864919
ArrayExpress:Q5U399 Uniprot:Q5U399
Length = 890
Score = 402 (146.6 bits), Expect = 1.4e-57, Sum P(4) = 1.4e-57
Identities = 96/327 (29%), Positives = 163/327 (49%)
Query: 412 ASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVEN------ 465
A +L + N + + + E ++I+ GT+ P+ F ++L + + E
Sbjct: 574 AQSSLKFLLLNAAVHFAQILQ-ECRAVIIAGGTMQPVADFKEQLLFSAGVTEERILEFSC 632
Query: 466 PHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPS 525
HVI + I ++ GPSG L +++ RDS + +E G + N+ IVP G++ FFPS
Sbjct: 633 GHVIPPENILPIVLCAGPSGQQLEFTFQTRDSPQMMEETGRVLSNLCNIVPGGVVCFFPS 692
Query: 526 YYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTST-- 583
Y + + W++T I +R+ KK EP+++S + +Y ++ S
Sbjct: 693 YEYEKRILGHWESTG------ILQRLQSKKKIFQEPKKASQVEQVLSEYSKCIQRCSNIG 746
Query: 584 ---SGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQG 640
+GA+ F+V GK+SEG++F+D GR +V+ GMP+ + P+++ K YLD
Sbjct: 747 GGQTGALLFSVVGGKMSEGINFSDDLGRCIVMVGMPYPNIKSPELQEKMAYLDKHMPHVA 806
Query: 641 GEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISL 700
G+ G+ +AVNQ++GR IRHR DY I+ CD R+A ++
Sbjct: 807 GKSP--------GKALVESLCMKAVNQSIGRAIRHRGDYACIVLCDHRYARTGTLQKLPE 858
Query: 701 WIQPHIQCYSKFGDVVYTLTRFFREER 727
WI+ ++ FG + RFF E+R
Sbjct: 859 WIRSSTHTHATFGPAFASARRFFLEKR 885
Score = 140 (54.3 bits), Expect = 1.4e-57, Sum P(4) = 1.4e-57
Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 184 DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEA 243
D+E L+ GR CPY+ TR +V PY L+ RK G++ K+ I+I DEA
Sbjct: 315 DVEQLIQHGRETHTCPYYSTRMSIPAAQVVVLPYQSLLHASTRKASGIKLKDQIVIIDEA 374
Query: 244 HNLEGICADAASFDLSSGLLTACISE 269
HNL + S ++S G L S+
Sbjct: 375 HNLMDTISAIHSAEISGGQLCRAHSQ 400
Score = 116 (45.9 bits), Expect = 1.4e-57, Sum P(4) = 1.4e-57
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 13 FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
FPF+ Y Q +ME + +L + + ESPTGTGK+L L+C L W
Sbjct: 10 FPFQPYPIQESFMEALYTALDQRKVGIFESPTGTGKSLSLICGALTW 56
Score = 110 (43.8 bits), Expect = 1.4e-57, Sum P(4) = 1.4e-57
Identities = 30/69 (43%), Positives = 40/69 (57%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNACRF 152
I Y SRTHSQL Q + E++ S Y ++V LGSR+ LCI+ EV L G+ Q N C
Sbjct: 208 IYYCSRTHSQLAQFVHEVQKSPYGDAVRLVNLGSRQNLCINPEVVRL-GNVQMMNERCLE 266
Query: 153 LCKKGTNRR 161
+ K +R
Sbjct: 267 MQKNKHEKR 275
>UNIPROTKB|I3LBL1 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0006357
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
GeneTree:ENSGT00530000063199 EMBL:CU914462 EMBL:CU694840
Ensembl:ENSSSCT00000025154 OMA:TEAWDIE Uniprot:I3LBL1
Length = 709
Score = 274 (101.5 bits), Expect = 3.1e-54, Sum P(3) = 3.1e-54
Identities = 63/194 (32%), Positives = 103/194 (53%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRP-KMVILGSREQLCIHREVSLLRGSAQNNACR 151
K+P I + +RTH Q+ Q+ +EL+ + Y M IL SR+ C+H EV +N C
Sbjct: 247 KIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRKEN--CM 304
Query: 152 FLCKKGTNRRCN-HHS--RVADYMK-NNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQ 207
L + C +H +++D H + DIE+LV +G+ CPY+ REL
Sbjct: 305 ELLDGRNGKSCYLYHGIHKISDQRTLQTLHGMCKAWDIEELVTLGKKIKACPYYTARELM 364
Query: 208 KTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACI 267
+ DI+F PYNYL+D R+ + + K ++I DEAHN+E ++AS+ ++ L
Sbjct: 365 QDADIIFCPYNYLLDVQIRESMEINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFAR 424
Query: 268 SEAKNCIDISSTRR 281
E + + I++ R+
Sbjct: 425 DELDSMV-INNIRK 437
Score = 249 (92.7 bits), Expect = 3.1e-54, Sum P(3) = 3.1e-54
Identities = 44/115 (38%), Positives = 76/115 (66%)
Query: 412 ASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITS 471
A R L++WC NP +A + + +V +I+LTSGTLSPM SF+ EL + F +++E HVI +
Sbjct: 590 AVRVLNFWCLNPAVAFSDING-KVWNIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINN 648
Query: 472 KQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSY 526
Q+W G + GP G L +++++ ++ ++ E+G ++++ + V G+L F PSY
Sbjct: 649 SQVWVGTIGSGPQGRNLCATFQHTETFAFQDEVGALLLSVCQTVSQGILCFLPSY 703
Score = 174 (66.3 bits), Expect = 3.1e-54, Sum P(3) = 3.1e-54
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ ++FP++AY QL M +++ L +K + LLESPTG+GK+L LLC+ LAW++SL
Sbjct: 8 YTIGGVKIDFPYKAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSL 67
>CGD|CAL0004313 [details] [associations]
symbol:orf19.2000 species:5476 "Candida albicans" [GO:0003678
"DNA helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0007535
"donor selection" evidence=IEA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IEA] InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0007049
GO:GO:0004003 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719450.1 RefSeq:XP_719578.1 ProteinModelPortal:Q5AD67
STRING:Q5AD67 GeneID:3638692 GeneID:3638794 KEGG:cal:CaO19.2000
KEGG:cal:CaO19.9551 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 Uniprot:Q5AD67
Length = 842
Score = 356 (130.4 bits), Expect = 1.5e-53, Sum P(3) = 1.5e-53
Identities = 88/298 (29%), Positives = 151/298 (50%)
Query: 415 TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENP----HVIT 470
+L++ +P +E + ++L GT+ PM + L + P N HVI
Sbjct: 532 SLNYMLLDPSAVFKEIVD-QAKCVLLCGGTMEPMSDYMDYLFPSVPTNKINTFACGHVIP 590
Query: 471 SKQIWAGIVPVGP-SGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
+ + + P+ + SY+ R+ + LG ++ I + VP G++IFFPSY +
Sbjct: 591 KENLQ--VFPISQWNDTNFEFSYQKRNDSKQLMALGEFLIEITKRVPYGVVIFFPSYKYL 648
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVV-EPRQSSLFPLAIEDYMAKLKDTSTSGAVF 588
DQ + W++T LT+I + +K + EP+ S + +Y L T GA+
Sbjct: 649 DQVLQFWRDTKI--LTSI-----ESEKTIFREPKDPSNVEKVLNEY-GYLIQTERKGAIL 700
Query: 589 FAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKL 648
F+V GK+SEG++F+D RAV++ G+P+ ++ KR+Y++ S GG + K
Sbjct: 701 FSVVGGKMSEGINFSDDLARAVIMVGLPYPNAYSGEMVTKRKYIETSELSNGGTTTDAKE 760
Query: 649 SFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
++Y RAVNQ++GR IRH +DY I D RF+ P ++++S W++ I
Sbjct: 761 K---SRNYYENLCMRAVNQSIGRSIRHINDYSIIYLVDRRFSTPRIQNKLSQWVKERI 815
Score = 219 (82.2 bits), Expect = 1.5e-53, Sum P(3) = 1.5e-53
Identities = 70/224 (31%), Positives = 113/224 (50%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNY---------RPKMVILGSREQLCIHREVSLLRGSAQ- 146
I ++SRTHSQL Q +L+ +N+ R K + LGSR+QLCI+ +V +G+ Q
Sbjct: 203 IFFSSRTHSQLNQFSSQLRLTNFQASFEDLEERTKYIPLGSRKQLCINEKVRS-KGNDQS 261
Query: 147 -NNACRFLCKKGTNRRCNHHSRVADYMKNN--PHLGDEPI----DIEDLVNIGRTFGPCP 199
N+AC L ++ TN C + + +YM ++ D + DIEDL +G CP
Sbjct: 262 VNDACLDL-QRETNG-CQYLPK--NYMMSSVTKEFADLSLAKIRDIEDLNELGIELNICP 317
Query: 200 YFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLS 259
Y+ R+ + +I+ PY + RK L ++ K+SI+I DEAHN+ + S ++
Sbjct: 318 YYSVRKGIEMTEIISLPYQMIFQDTTRKILNLDIKDSIIIIDEAHNIIDVITSMYSIKIT 377
Query: 260 SGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLK 303
S L I K I ++ + +S +N + +LLK
Sbjct: 378 SDQLNKVIKSLK--IYLNKFLKRLNSGNRINLMKLIKICQILLK 419
Score = 114 (45.2 bits), Expect = 1.5e-53, Sum P(3) = 1.5e-53
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 PFEAYDCQLVYMEKVIQSLQNKCN-ALLESPTGTGKTLCLLCATLAWRKS 62
P+ YD Q+ M+ + +++N L ESPTGTGKTL ++C+++ W ++
Sbjct: 13 PYTPYDIQIQLMDAIYNTIENGYKIGLFESPTGTGKTLSIICSSMTWLRT 62
Score = 37 (18.1 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 713 GDVV--YTLTRFFREERICGSTNLKLIKTEVSGDVRELK 749
GD+V + L +F + +I + KTE+ D E K
Sbjct: 445 GDLVNIHKLDQFLTKSKIAYKIESYIEKTEMETDNGEKK 483
>FB|FBgn0026876 [details] [associations]
symbol:CG11403 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
EMBL:AE014298 GO:GO:0006200 GO:GO:0004003 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199 KO:K11273
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 EMBL:AL121806 EMBL:AY058540
RefSeq:NP_569898.1 UniGene:Dm.4169 SMR:Q9XZS9 STRING:Q9XZS9
EnsemblMetazoa:FBtr0070245 GeneID:31072 KEGG:dme:Dmel_CG11403
UCSC:CG11403-RA FlyBase:FBgn0026876 InParanoid:Q9XZS9
OrthoDB:EOG4Q83CB GenomeRNAi:31072 NextBio:771801 Uniprot:Q9XZS9
Length = 861
Score = 361 (132.1 bits), Expect = 2.2e-52, Sum P(3) = 2.2e-52
Identities = 101/334 (30%), Positives = 165/334 (49%)
Query: 402 ANAAD--VLKGKASRTLSWWCFNPGIAMQEFSRL--EVGSIILTSGTLSPMDSFAQELKL 457
+NA D +L TL + +P ++F+ + E +I++ GT+ P ++L
Sbjct: 549 SNAEDGRILVDPVGGTLKYILLDPA---EQFADIVAEARAIVIAGGTMQPTKELKEQLFT 605
Query: 458 NFPLR-VEN--PHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARI 514
R VE HV+ + I ++ GPSG L+ + +R S E +EL + N+ ++
Sbjct: 606 GCHDRLVERFYNHVVANDAILPFVISNGPSGAPLSFKFAHRGSAEMLRELSMILRNLCQV 665
Query: 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDY 574
VP G++ F PSY +D+ + + G L TI R K V S L +++Y
Sbjct: 666 VPGGVVCFLPSYEYLDKVYKYLEQS--GTLETISGR-----KSVFREVSGSAEQL-LDNY 717
Query: 575 MAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDL 634
+K ++ GA+ +V GK+SEGL+FAD GRAV++ G+P++ P++R + ++LD
Sbjct: 718 ALAIKRPASYGALLLSVVGGKLSEGLNFADDLGRAVLVVGLPYSNSLSPELRQRMQHLD- 776
Query: 635 QAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSR 694
KL +G ++Y +AVNQ +GR +RH DY + D+RFA P
Sbjct: 777 -----------EKLGPGAGNEYYENLCVKAVNQCIGRAVRHIKDYACVYLLDKRFADPKI 825
Query: 695 KSQISLWIQPHI----QCYSKFGDVVYTLTRFFR 724
+ ++ WI HI FG V RFF+
Sbjct: 826 RGKLPKWISRHIVEANAANGGFGAVQGRTARFFK 859
Score = 209 (78.6 bits), Expect = 2.2e-52, Sum P(3) = 2.2e-52
Identities = 72/227 (31%), Positives = 104/227 (45%)
Query: 97 ILYTSRTHSQLRQVIQEL-KTSNYRP-KMVILGSREQLCIHREVSLLRG-SAQNNACRFL 153
I + SRTHSQL Q++ EL KT + + + + LGSR+QLC + V L+ N C +
Sbjct: 190 IFFCSRTHSQLAQIVAELRKTPHGQSVRSISLGSRQQLCGNPAVRKLKHVGLMNERCLDM 249
Query: 154 CKKGTNRRCNHHSRV-ADYMKNNPH--------LGD----EPIDIEDLVNIGRTFGPCPY 200
K + SR+ A+ P L D EP+DIE+L N G G C Y
Sbjct: 250 ATKKARPNPSKKSRLTAEANSRCPFKAASLVESLRDLALTEPLDIEELANEGTACGGCSY 309
Query: 201 FMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSS 260
+ +R + ++ PY L+ R LG+ K SI+I DEAHNL A ++S
Sbjct: 310 YASRSAVEHAQLILLPYQLLLQKSARNQLGISLKGSIVIVDEAHNLLDSVAQLHGSEISR 369
Query: 261 GLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKR 307
L + D R + +N F I+R LL L++R
Sbjct: 370 QQLERAKVQISGYKDHFQKRFTTKNLLKINQIIF-IIRRLLKILDQR 415
Score = 108 (43.1 bits), Expect = 2.2e-52, Sum P(3) = 2.2e-52
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 13 FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
FP+ Y+ Q M+++ Q L+ + ESPTGTGK+L L C L W
Sbjct: 20 FPYSPYEIQEQLMQELFQVLERGQVGIFESPTGTGKSLTLTCGALTW 66
Score = 42 (19.8 bits), Expect = 5.5e-35, Sum P(3) = 5.5e-35
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 112 QELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNH 164
QE YRP + SR + + V+ LR + + R + + C +
Sbjct: 178 QEAAEDRYRPVQIFFCSRTHSQLAQIVAELRKTPHGQSVRSISLGSRQQLCGN 230
Score = 39 (18.8 bits), Expect = 5.4e-18, Sum P(3) = 5.4e-18
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 847 LHAKPRKEELIAPCSTKKRKVLISESDQMQCVKKISEIASDAE 889
+ +PR E AP ST + +L + + + +K + E
Sbjct: 465 MEREPRPSENQAPVSTARSLILQRLASEQKLKEKTKSVKRRVE 507
>MGI|MGI:2443590 [details] [associations]
symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0000922 "spindle pole" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030496 "midbody" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 MGI:MGI:2443590 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0003723 GO:GO:0000790 GO:GO:0004003
GO:GO:0004386 GO:GO:0030496 GO:GO:0000922 GO:GO:0008094
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 OMA:NLGRCVV GeneTree:ENSGT00530000063199
GO:GO:0007062 HOVERGEN:HBG058884 OrthoDB:EOG4B5P4M CTD:1663
EMBL:BC079656 IPI:IPI00460651 RefSeq:NP_001003919.1
UniGene:Mm.259605 ProteinModelPortal:Q6AXC6 SMR:Q6AXC6
STRING:Q6AXC6 PhosphoSite:Q6AXC6 PRIDE:Q6AXC6
Ensembl:ENSMUST00000163605 GeneID:320209 KEGG:mmu:320209
UCSC:uc008dha.1 InParanoid:Q6AXC6 NextBio:396263 Bgee:Q6AXC6
Genevestigator:Q6AXC6 GermOnline:ENSMUSG00000035842 Uniprot:Q6AXC6
Length = 880
Score = 369 (135.0 bits), Expect = 1.9e-51, Sum P(4) = 1.9e-51
Identities = 93/323 (28%), Positives = 158/323 (48%)
Query: 415 TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQEL------KLNFPLRVENPHV 468
+L + NP + + + E ++++ GT+ PM F ++L + + HV
Sbjct: 566 SLKFLLLNPAVHFAQVVK-ECRAVVIAGGTMQPMSDFREQLLACSGVEAGRVVEFSCGHV 624
Query: 469 ITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYL 528
I I I+ GPS L +Y+ R+ + +E G + N+ +VP G++ F PSY
Sbjct: 625 IPPDNILPLIICSGPSNQQLEFTYQRRELPQMVEETGRILCNLCNVVPGGVVCFLPSYEY 684
Query: 529 MDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTS---- 584
+ Q A W T G LT R+ KK EP+++S + Y + S S
Sbjct: 685 LRQVHAHWDKT--GLLT----RLSVRKKIFQEPKRASQVEQVLMAYSKCIMSCSHSEGHL 738
Query: 585 -GAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEY 643
GA+ +V GK+SEG++F+D GR VV+ GMP+ + P+++ K YL+ G+
Sbjct: 739 TGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMAYLNQTLPRTQGQP 798
Query: 644 KETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQ 703
L G +A+NQ++GR IRH+ D+ +I+ D R+A PS +++ WI+
Sbjct: 799 -------LPGTVLIENLCMKAINQSIGRAIRHQRDFASIVLLDHRYARPSILAKLPAWIR 851
Query: 704 PHIQCYSKFGDVVYTLTRFFREE 726
++ + FG + +F RE+
Sbjct: 852 DRVEVKATFGPAFAAVRKFHREK 874
Score = 119 (46.9 bits), Expect = 1.9e-51, Sum P(4) = 1.9e-51
Identities = 35/134 (26%), Positives = 60/134 (44%)
Query: 184 DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEA 243
D+E LV +G+ CPY+ +R +V PY L+ R+ G+ + ++I DEA
Sbjct: 307 DMEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQVVIIDEA 366
Query: 244 HNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLK 303
HNL + S +++ L S+ ++ R L N ++ +L
Sbjct: 367 HNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERYRKR--------LKAKNLMYIKQILYL 418
Query: 304 LEKRIAEVPINSKE 317
LEK +A + N K+
Sbjct: 419 LEKFVAVLGGNVKQ 432
Score = 117 (46.2 bits), Expect = 1.9e-51, Sum P(4) = 1.9e-51
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 KIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
+I GI FPF Y Q +M ++ + L+ + ESPTGTGK+L L+C L+W
Sbjct: 7 EIGGIHFPFPFPPYPIQKDFMAELYKVLEGGKIGIFESPTGTGKSLSLICGALSW 61
Score = 107 (42.7 bits), Expect = 1.9e-51, Sum P(4) = 1.9e-51
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNY--RPKMVILGSREQLCIHREVSLLRGSAQ--NNAC 150
I Y SRTHSQL Q ++E+ S + ++V LGSR+ LC++ +V L GS Q N+ C
Sbjct: 201 IYYCSRTHSQLAQFVREVLKSPFGKETRLVSLGSRQTLCVNEDVKNL-GSVQLMNDRC 257
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 153 LCKKGTNR---RCNHHSR------VADYMKNNPH-LGDEPIDIEDLVNIGRTFGP 197
LC K N+ R H R + D+ P L P I D V + TFGP
Sbjct: 808 LCMKAINQSIGRAIRHQRDFASIVLLDHRYARPSILAKLPAWIRDRVEVKATFGP 862
>UNIPROTKB|Q91941 [details] [associations]
symbol:ERCC2/XPD "ERCC2/XPD protein" species:8083
"Xiphophorus maculatus" [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0006917 "induction of
apoptosis" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0006917 GO:GO:0003677 GO:GO:0004003
GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0043139 HOVERGEN:HBG051498
EMBL:U17896 PIR:I51720 ProteinModelPortal:Q91941 Uniprot:Q91941
Length = 760
Score = 366 (133.9 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 94/297 (31%), Positives = 156/297 (52%)
Query: 412 ASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
A+ L + C +P IA++ F R + S+I+TSGTLSP+D + + L P+ + + +
Sbjct: 429 ANPVLHFSCMDPSIAIKPVFQRFQ--SVIITSGTLSPLDIYPRILDFR-PVTMASFTMTL 485
Query: 471 SKQIWAG-IVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
++ IV G L+S + R+ + GN ++ ++ +VPDG++ FF SY M
Sbjct: 486 ARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAVVPDGIVAFFTSYVYM 545
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+ +A W I E I K+K +E + ++ +A+E Y ++ GA+
Sbjct: 546 ENIVASWYEQG------ILENIQKNKLIFIETQDAAETSMALEKYQEACENGR--GAILL 597
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLS 649
+V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q + ++ L+
Sbjct: 598 SVARGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF----LT 653
Query: 650 FLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
F A R Q +GR IR + DYG +IF D+R+A ++ ++ WIQ HI
Sbjct: 654 F---------DAMRHAAQCLGRAIRGKTDYGLMIFADKRYARSDKRGKLPRWIQEHI 701
Score = 234 (87.4 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 77/272 (28%), Positives = 126/272 (46%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
I G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 5 IEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQRAF- 63
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKTSNYRPKMV 124
L KL Y T + +N+ +
Sbjct: 64 ---PLDVTKLIYCSRTVPEIEKVVEELRKLMEF-YAKETG----------EVNNFLA--L 107
Query: 125 ILGSREQLCIHREVSLLR-GSAQNNACRFLCKK--GTNRRCNHHSRVADYMKNNPHLGDE 181
L SR+ LCIH EVS LR G + C L R N + V + + +G +
Sbjct: 108 SLSSRKNLCIHPEVSSLRFGKEVDGKCHSLTASYIRAQRHSNPNQPVCRFYEEFDAVGRQ 167
Query: 182 -PI-----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEW-K 234
P+ +++DL + GR G CPY++ R +IV Y+YL+DP + E K
Sbjct: 168 VPLPAGIYNLDDLKDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAK 227
Query: 235 NSILIFDEAHNLEGICADAASFDLSSGLLTAC 266
S+++FDEAHN++ +C D+ S +++ + C
Sbjct: 228 KSVVVFDEAHNIDNVCIDSMSVNITRRTVDRC 259
Score = 39 (18.8 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 865 RKVLISESDQMQCVKKISEIASDAESS 891
RK L ++++QC+ + EIA A+ S
Sbjct: 369 RKPLRFCAERLQCLLRTLEIADIADFS 395
Score = 37 (18.1 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 25/101 (24%), Positives = 40/101 (39%)
Query: 544 LTTIWERICKHKKPV---VEPRQSSLFPLAIEDYMAKLKDTSTSGAVF-FAVCRGKVSEG 599
L I++++C +KP+ E Q L L I D + D S + FA S+G
Sbjct: 358 LKDIFDKVCIDRKPLRFCAERLQCLLRTLEIAD----IADFSAVTLISNFATLVSTYSQG 413
Query: 600 LDFA--DHAGRAVVITG--MPFATMTDPKVRLKREYLDLQA 636
R I + F+ M DP + +K + Q+
Sbjct: 414 FTIIIEPFEDRTPTIANPVLHFSCM-DPSIAIKPVFQRFQS 453
>UNIPROTKB|P18074 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0021510 "spinal cord
development" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030282 "bone mineralization"
evidence=IEA] [GO:0032289 "central nervous system myelin formation"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043249 "erythrocyte maturation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043588 "skin development" evidence=IEA] [GO:0048820 "hair
follicle maturation" evidence=IEA] [GO:0060218 "hematopoietic stem
cell differentiation" evidence=IEA] [GO:0000441 "SSL2-core TFIIH
complex" evidence=IEA] [GO:0001666 "response to hypoxia"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA;TAS] [GO:0006289 "nucleotide-excision repair"
evidence=IGI;NAS;TAS] [GO:0047485 "protein N-terminus binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA;TAS]
[GO:0005675 "holo TFIIH complex" evidence=IDA;TAS] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=IMP]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IDA;TAS] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019907 "cyclin-dependent
protein kinase activating kinase holoenzyme complex" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0035315 "hair cell differentiation" evidence=IMP]
[GO:0000075 "cell cycle checkpoint" evidence=IMP] [GO:0006979
"response to oxidative stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007059
"chromosome segregation" evidence=IMP] [GO:0071817 "MMXD complex"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0008353 "RNA
polymerase II carboxy-terminal domain kinase activity"
evidence=IDA] [GO:0009650 "UV protection" evidence=IGI] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=TAS] [GO:0006361 "transcription initiation from
RNA polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=TAS]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0050434 "positive regulation of
viral transcription" evidence=TAS] [GO:0006468 "protein
phosphorylation" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0006915 GO:GO:0019048 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0016032 GO:GO:0006979
GO:GO:0006917 GO:GO:0046872 GO:GO:0003677 GO:GO:0008283
GO:GO:0007568 GO:GO:0001701 GO:GO:0001666 Reactome:REACT_1675
GO:GO:0045944 GO:GO:0030198 GO:GO:0006468 EMBL:CH471126
GO:GO:0040016 GO:GO:0051539 GO:GO:0009791 GO:GO:0060218
GO:GO:0004003 GO:GO:0035264 GO:GO:0006368 GO:GO:0071817
GO:GO:0021510 GO:GO:0030282 GO:GO:0006367 GO:GO:0000075
Reactome:REACT_1788 GO:GO:0043388 GO:GO:0009650 GO:GO:0005675
GO:GO:0006370 GO:GO:0000718 GO:GO:0050434 GO:GO:0006363
GO:GO:0006362 GO:GO:0006361 GO:GO:0006283 GO:GO:0008094
eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315 GO:GO:0043139
GO:GO:0043249 Orphanet:1466 HOGENOM:HOG000205390 KO:K10844
OMA:KDVDGKC CTD:2068 HOVERGEN:HBG051498 GO:GO:0033683 EMBL:X52221
EMBL:X52222 EMBL:L47234 EMBL:AY092780 EMBL:BT006883 EMBL:BC108255
EMBL:BC110523 IPI:IPI00029728 IPI:IPI00984321 PIR:S10888
RefSeq:NP_000391.1 RefSeq:NP_001124339.1 UniGene:Hs.487294
ProteinModelPortal:P18074 DIP:DIP-644N STRING:P18074
PhosphoSite:P18074 DMDM:119540 PaxDb:P18074 PRIDE:P18074 DNASU:2068
Ensembl:ENST00000391940 Ensembl:ENST00000391942
Ensembl:ENST00000391945 GeneID:2068 KEGG:hsa:2068 UCSC:uc002pbj.2
GeneCards:GC19M045854 HGNC:HGNC:3434 HPA:CAB005375 MIM:126340
MIM:278730 MIM:601675 MIM:610756 neXtProt:NX_P18074 Orphanet:231256
Orphanet:453 Orphanet:670 Orphanet:276258 Orphanet:220295
PharmGKB:PA27848 InParanoid:P18074 OrthoDB:EOG4BVRT2
PhylomeDB:P18074 ChiTaRS:ERCC2 GenomeRNAi:2068 NextBio:8409
ArrayExpress:P18074 Bgee:P18074 CleanEx:HS_ERCC2
Genevestigator:P18074 GermOnline:ENSG00000104884 GO:GO:0000441
GO:GO:0032289 GO:GO:0048820 Uniprot:P18074
Length = 760
Score = 353 (129.3 bits), Expect = 5.7e-48, Sum P(2) = 5.7e-48
Identities = 90/297 (30%), Positives = 156/297 (52%)
Query: 412 ASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
A+ L + C + +A++ F R + S+I+TSGTLSP+D + + L + P+ + +
Sbjct: 429 ANPILHFSCMDASLAIKPVFERFQ--SVIITSGTLSPLDIYPKILDFH-PVTMATFTMTL 485
Query: 471 SKQ-IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
++ + I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M
Sbjct: 486 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 545
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+ +A W I E I ++K +E + + +A+E Y ++ GA+
Sbjct: 546 ESTVASWYEQG------ILENIQRNKLLFIETQDGAETSVALEKYQEACENGR--GAILL 597
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLS 649
+V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q + ++ L+
Sbjct: 598 SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF----LT 653
Query: 650 FLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
F A R Q VGR IR + DYG ++F D+RFA ++ ++ WIQ H+
Sbjct: 654 F---------DAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHL 701
Score = 234 (87.4 bits), Expect = 5.7e-48, Sum P(2) = 5.7e-48
Identities = 75/275 (27%), Positives = 132/275 (48%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
+ G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 5 VDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYP 64
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYRPK 122
T +P I + +LR+++ E + P
Sbjct: 65 LEVTKLIYCSRT-----------------VPEI---EKVIEELRKLLNFYEKQEGEKLPF 104
Query: 123 M-VILGSREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRRCNHHSRVAD---YMKNNPH 177
+ + L SR+ LCIH EV+ LR G + C L + H + + Y + + H
Sbjct: 105 LGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAH 164
Query: 178 LGDEPI-----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVE 232
+ P+ +++DL +GR G CPYF+ R ++V Y+YL+DP + E
Sbjct: 165 GREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKE 224
Query: 233 W-KNSILIFDEAHNLEGICADAASFDLSSGLLTAC 266
+ ++++FDEAHN++ +C D+ S +L+ L C
Sbjct: 225 LARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRC 259
>ASPGD|ASPL0000038959 [details] [associations]
symbol:AN10414 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:BN001306 GO:GO:0004003
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
EnsemblFungi:CADANIAT00009590 Uniprot:C8VHC2
Length = 841
Score = 426 (155.0 bits), Expect = 5.9e-48, Sum P(3) = 5.9e-48
Identities = 142/522 (27%), Positives = 247/522 (47%)
Query: 226 RKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISST--RRGQ 283
R L + K ++I DEAHNL DA S ++ S +T +S+ + I +T R+ +
Sbjct: 341 RDALNLSIKGHVVIIDEAHNL----MDAIS-NIHS--VTVTLSQLRTSIFQLTTYARKFK 393
Query: 284 SSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYK 343
+ + N + A + L+ + + + I++K+ ++ +L+A Q YK
Sbjct: 394 TRLKGKNRNYIAQVIRLISSIADHLQSL-IDNKQA--SEGSVLSSDLMAGKGADQINPYK 450
Query: 344 LIDIVEVAAELLQEDK-LQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADA 402
L + + + D + +S + E S I ++F H + + + +
Sbjct: 451 LCRYLNESKLARKVDGYIDFSQSKANAQAEPKSTI-PVLF------HIQSFLLPLMNLSS 503
Query: 403 NAADVL-KGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPL 461
K L + +P +E + ++IL GT+SPM + L P
Sbjct: 504 EGRLFFTKTPGDIQLHYMLLDPTNHFREIVE-DARAVILAGGTMSPMSDYLNHLFSYVPK 562
Query: 462 RVENP----HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPD 517
N HVI S+ + A + G +G + +Y RD+ + +LG T + R +PD
Sbjct: 563 DRLNTFSYGHVIPSENLTAHTLARGVTGCEFDFTYAGRDAEKMILDLGRTFTQLCRAIPD 622
Query: 518 GLLIFFPSYYLMDQCIACWKNTS-HGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMA 576
G++ FFPSY + + + WKN N T++E + K K+ + E R++ L +D +
Sbjct: 623 GIVAFFPSYEYLSRVLNIWKNAVVRENKQTLYETVEKEKQILYESRETEL---TTDDLLN 679
Query: 577 KLKDTSTSG--AVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDL 634
+T G A+ +V GK+SEG++F+D GR V+I G+PF + P + K +Y++
Sbjct: 680 NYANTINKGRGALLLSVVGGKLSEGINFSDKLGRGVLIVGLPFPNIRSPVWQAKIKYIEQ 739
Query: 635 QA-QSQG-GEYKETKLSF-LSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAH 691
+A ++ G G + +LS +G D+Y RAVNQ +GR IRHR+DY AI+ D+R+
Sbjct: 740 KAYRNVGSGSEESRRLSAKAAGRDFYENACMRAVNQCIGRAIRHRNDYAAIVLIDKRYGK 799
Query: 692 PSRKSQISLWIQPHIQCYSKFGDVVYTLTR---FFREERICG 730
S ++++ WI+ + S TL FFR + CG
Sbjct: 800 TSIEAKLPGWIKQSLVKDSALLPAATTLDGLACFFRSKNHCG 841
Score = 128 (50.1 bits), Expect = 5.9e-48, Sum P(3) = 5.9e-48
Identities = 47/160 (29%), Positives = 71/160 (44%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRG-SAQNNACR 151
+L + S LRQ + + + R K + LGSR+ LCI+ V+ L +A N C
Sbjct: 213 ELRRVTMPSTLPESLRQGLTDEEEQGERIKHISLGSRKNLCINSRVAALGNPTAINERCL 272
Query: 152 FLCKKGTNR--RCNHHSRVADYMKN---NPHLGDEPIDIEDLVNIGRTFGPCPYFMTREL 206
L + T RC++ D K H DIEDL +G+ G CPY+ +R +
Sbjct: 273 ELQQPNTPAPLRCSYLPTEEDEAKTLSFRDHALATVKDIEDLGKLGKKLGLCPYYASRGV 332
Query: 207 QKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNL 246
++ + R L + K ++I DEAHNL
Sbjct: 333 --------VSHS---ERSARDALNLSIKGHVVIIDEAHNL 361
Score = 75 (31.5 bits), Expect = 5.9e-48, Sum P(3) = 5.9e-48
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLL 53
P+ YD Q+ +M+ + + L+ A+ ESPTG+G L ++
Sbjct: 20 PYTPYDIQVRFMQSLYECLEEGKVAIFESPTGSGPRLQII 59
Score = 58 (25.5 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 97 ILYTSRTHSQLRQVIQELK 115
I Y SRTHSQL Q EL+
Sbjct: 197 IFYCSRTHSQLMQFASELR 215
>ZFIN|ZDB-GENE-040426-997 [details] [associations]
symbol:ercc2 "excision repair cross-complementing
rodent repair deficiency, complementation group 2" species:7955
"Danio rerio" [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 ZFIN:ZDB-GENE-040426-997
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
GO:GO:0006289 TIGRFAMs:TIGR00604 GeneTree:ENSGT00550000075092
EMBL:CR855332 EMBL:JN172105 IPI:IPI00495155 UniGene:Dr.5152
Ensembl:ENSDART00000141618 Uniprot:F1Q5E7
Length = 760
Score = 475 (172.3 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 158/554 (28%), Positives = 268/554 (48%)
Query: 184 DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEW-KNSILIFDE 242
+++DL + GR G CPYF+ R +IV Y+YL+DP + E K S+++FDE
Sbjct: 176 NLDDLKDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDE 235
Query: 243 AHNLEGICADAASFDLSSGLLTAC---ISEAKNCID-ISSTRRGQSSDET------LNPD 292
AHN++ +C D+ S +++ L C + +N I I T + +E L
Sbjct: 236 AHNIDNVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEA 295
Query: 293 NFAILRALLLK---LEKRIAE--VP--INSKE--LGFTKPG-PYIYELLADLNITQETAY 342
N A + L L I + VP I + E +GF K Y+ L ++ QE+A
Sbjct: 296 NVARETDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAP 355
Query: 343 KLI-DIVE---VAAELLQ--EDKLQNKKSTTACR-IESISNILKII-FRDKGTAHSAYYR 394
+ + DI E + + L+ ++L++ T I S I I F + +S +
Sbjct: 356 QFLKDIFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSPITLISHFATLVSTYSKGFT 415
Query: 395 VHVREADANAADVLKGKASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQ 453
+ + + + A+ L + C +P IA++ F R + ++I+TSGTLSP+D + +
Sbjct: 416 IIIEPFEDKTPTI----ANPVLHFSCMDPSIAIKPVFGRFQ--TVIITSGTLSPLDIYPR 469
Query: 454 ELKLNFPLRVENPHVITSKQIWAG-IVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIA 512
L P+ + + + ++ IV G + S + R+ + GN ++ ++
Sbjct: 470 ILDFR-PVTMASFTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMS 528
Query: 513 RIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIE 572
IVPDG++ FF SY M+ +A W I E I ++K +E + ++ +A+E
Sbjct: 529 AIVPDGIVAFFTSYMYMENIVASWYEQG------ILENIQRNKLIFIETQDAAETSMALE 582
Query: 573 DYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYL 632
Y ++ GA+ +V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL
Sbjct: 583 KYQEACENGR--GAILLSVARGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYL 640
Query: 633 DLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHP 692
Q Q + ++ L+F A R Q VGR IR + DYG +IF D+R+A
Sbjct: 641 RDQFQIRENDF----LTF---------DAMRHAAQCVGRAIRGKTDYGLMIFADKRYARA 687
Query: 693 SRKSQISLWIQPHI 706
++ ++ WIQ H+
Sbjct: 688 DKRGKLPRWIQEHL 701
Score = 226 (84.6 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 61/190 (32%), Positives = 98/190 (51%)
Query: 97 ILYTSRTHSQLRQVIQEL-KTSNYRPKM---------VILGSREQLCIHREVSLLR-GSA 145
++Y SRT ++ +V++EL K +Y K + L SR+ LCIH EVS LR G
Sbjct: 70 LVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPEVSSLRFGKE 129
Query: 146 QNNACRFLCKK--GTNRRCNHHSRVADYMKNNPHLGDE-PI-----DIEDLVNIGRTFGP 197
+ C L + N + V + + ++G + PI +++DL + GR G
Sbjct: 130 VDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDLKDFGRRKGW 189
Query: 198 CPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEW-KNSILIFDEAHNLEGICADAASF 256
CPYF+ R +IV Y+YL+DP + E K S+++FDEAHN++ +C D+ S
Sbjct: 190 CPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNIDNVCIDSMSV 249
Query: 257 DLSSGLLTAC 266
+++ L C
Sbjct: 250 NITRRTLDRC 259
Score = 99 (39.9 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKS 62
I G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++K+
Sbjct: 5 IDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQKT 62
Score = 39 (18.8 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 727 RICGSTNLKLIKTEVSGDVRELKPVDLL 754
R C L++T D+ + P+ L+
Sbjct: 373 RFCAERLRSLLRTLEIADIADFSPITLI 400
Score = 39 (18.8 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 866 KVLISESDQMQCVKKISEIASDAESSQPSSFIPITNKVKHEKPQIS--DSGSRIIAQ 920
KV I C +++ + E + + F PIT + H +S G II +
Sbjct: 364 KVCIDRKPLRFCAERLRSLLRTLEIADIADFSPIT-LISHFATLVSTYSKGFTIIIE 419
>UNIPROTKB|F1N2P3 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9913 "Bos taurus" [GO:0071817 "MMXD
complex" evidence=IEA] [GO:0060218 "hematopoietic stem cell
differentiation" evidence=IEA] [GO:0048820 "hair follicle
maturation" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043588 "skin
development" evidence=IEA] [GO:0043388 "positive regulation of DNA
binding" evidence=IEA] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0035315 "hair cell differentiation" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=IEA] [GO:0032289 "central nervous system myelin formation"
evidence=IEA] [GO:0030282 "bone mineralization" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0021510 "spinal cord development" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0008353
"RNA polymerase II carboxy-terminal domain kinase activity"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007568
"aging" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737 GO:GO:0006915
GO:GO:0043066 GO:GO:0043588 GO:GO:0007059 GO:GO:0006979
GO:GO:0006917 GO:GO:0003677 GO:GO:0008283 GO:GO:0007568
GO:GO:0001701 GO:GO:0045944 GO:GO:0030198 GO:GO:0040016
GO:GO:0009791 GO:GO:0060218 GO:GO:0004003 GO:GO:0035264
GO:GO:0071817 GO:GO:0021510 GO:GO:0030282 GO:GO:0000075
GO:GO:0043388 GO:GO:0008353 GO:GO:0009650 GO:GO:0019907
GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0035315 GO:GO:0043139
GO:GO:0043249 OMA:KDVDGKC IPI:IPI00866827 GO:GO:0033683
GO:GO:0032289 GO:GO:0048820 GeneTree:ENSGT00550000075092
EMBL:DAAA02047375 Ensembl:ENSBTAT00000002680 Uniprot:F1N2P3
Length = 759
Score = 354 (129.7 bits), Expect = 5.0e-47, Sum P(2) = 5.0e-47
Identities = 90/297 (30%), Positives = 156/297 (52%)
Query: 412 ASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
A+ L + C + +A++ F R + S+I+TSGTLSP+D + + L + P+ + +
Sbjct: 428 ANPILHFSCMDASLAIKPVFERFQ--SVIITSGTLSPLDIYPKILDFH-PVTMATFTMTL 484
Query: 471 SKQ-IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
++ + I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M
Sbjct: 485 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 544
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+ +A W I E I ++K +E + + +A+E Y ++ GA+
Sbjct: 545 ESTVASWYEQG------ILENIQRNKLLFIETQDGAETSVALEKYQEACENGR--GAILL 596
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLS 649
+V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q + ++ L+
Sbjct: 597 SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF----LT 652
Query: 650 FLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
F A R Q VGR IR + DYG ++F D+RFA ++ ++ WIQ H+
Sbjct: 653 F---------DAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHL 700
Score = 224 (83.9 bits), Expect = 5.0e-47, Sum P(2) = 5.0e-47
Identities = 75/275 (27%), Positives = 130/275 (47%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
+ G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 4 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYP 63
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYRPK 122
T +P I + +LR+++ E + P
Sbjct: 64 LEVTKLIYCSRT-----------------VPEI---EKVIEELRKLLSFYEKQEGEKLPF 103
Query: 123 M-VILGSREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRRCNHHSRVAD---YMKNNPH 177
+ + L SR+ LCIH EV+ LR G + C L + S + Y + + H
Sbjct: 104 LGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVH 163
Query: 178 LGDEPI-----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVE 232
P+ +++DL +GR G CPYF+ R ++V Y+YL+DP + E
Sbjct: 164 GRQVPLPTGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKE 223
Query: 233 W-KNSILIFDEAHNLEGICADAASFDLSSGLLTAC 266
+ ++++FDEAHN++ +C D+ S +L+ L C
Sbjct: 224 LARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRC 258
>UNIPROTKB|A6QLJ0 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9913 "Bos taurus" [GO:0006468
"protein phosphorylation" evidence=ISS] [GO:0008353 "RNA polymerase
II carboxy-terminal domain kinase activity" evidence=ISS]
[GO:0071817 "MMXD complex" evidence=ISS] [GO:0005819 "spindle"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0035315 "hair cell differentiation" evidence=ISS] [GO:0004672
"protein kinase activity" evidence=ISS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=ISS] [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0000075 "cell cycle checkpoint" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
GO:GO:0007059 GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0051539 GO:GO:0006366
GO:GO:0004003 GO:GO:0071817 GO:GO:0008022 GO:GO:0000075
GO:GO:0005675 eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 KO:K10844 EMBL:BC147982 IPI:IPI00866827
RefSeq:NP_001096787.1 UniGene:Bt.4215 STRING:A6QLJ0 PRIDE:A6QLJ0
GeneID:100125238 KEGG:bta:100125238 CTD:2068 HOVERGEN:HBG051498
NextBio:20788783 GO:GO:0033683 Uniprot:A6QLJ0
Length = 760
Score = 354 (129.7 bits), Expect = 5.0e-47, Sum P(2) = 5.0e-47
Identities = 90/297 (30%), Positives = 156/297 (52%)
Query: 412 ASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
A+ L + C + +A++ F R + S+I+TSGTLSP+D + + L + P+ + +
Sbjct: 429 ANPILHFSCMDASLAIKPVFERFQ--SVIITSGTLSPLDIYPKILDFH-PVTMATFTMTL 485
Query: 471 SKQ-IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
++ + I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M
Sbjct: 486 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 545
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+ +A W I E I ++K +E + + +A+E Y ++ GA+
Sbjct: 546 ESTVASWYEQG------ILENIQRNKLLFIETQDGAETSVALEKYQEACENGR--GAILL 597
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLS 649
+V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q + ++ L+
Sbjct: 598 SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF----LT 653
Query: 650 FLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
F A R Q VGR IR + DYG ++F D+RFA ++ ++ WIQ H+
Sbjct: 654 F---------DAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHL 701
Score = 224 (83.9 bits), Expect = 5.0e-47, Sum P(2) = 5.0e-47
Identities = 75/275 (27%), Positives = 130/275 (47%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
+ G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 5 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYP 64
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYRPK 122
T +P I + +LR+++ E + P
Sbjct: 65 LEVTKLIYCSRT-----------------VPEI---EKVIEELRKLLSFYEKQEGEKLPF 104
Query: 123 M-VILGSREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRRCNHHSRVAD---YMKNNPH 177
+ + L SR+ LCIH EV+ LR G + C L + S + Y + + H
Sbjct: 105 LGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVH 164
Query: 178 LGDEPI-----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVE 232
P+ +++DL +GR G CPYF+ R ++V Y+YL+DP + E
Sbjct: 165 GRQVPLPTGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKE 224
Query: 233 W-KNSILIFDEAHNLEGICADAASFDLSSGLLTAC 266
+ ++++FDEAHN++ +C D+ S +L+ L C
Sbjct: 225 LARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRC 259
>UNIPROTKB|A8MPP1 [details] [associations]
symbol:DDX11L8 "Putative ATP-dependent RNA helicase
DDX11-like protein 8" species:9606 "Homo sapiens" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0003723 GO:GO:0004003 eggNOG:COG1199
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 EMBL:AC009533
IPI:IPI00872853 ProteinModelPortal:A8MPP1 SMR:A8MPP1 STRING:A8MPP1
PhosphoSite:A8MPP1 PaxDb:A8MPP1 PRIDE:A8MPP1 GeneCards:GC12M000095
HGNC:HGNC:37101 neXtProt:NX_A8MPP1 HOVERGEN:HBG058884
InParanoid:A8MPP1 OrthoDB:EOG4B5P4M Genevestigator:A8MPP1
Uniprot:A8MPP1
Length = 907
Score = 322 (118.4 bits), Expect = 7.6e-47, Sum P(4) = 7.6e-47
Identities = 88/330 (26%), Positives = 156/330 (47%)
Query: 409 KGKASR-TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENP- 466
+G S TL + NP + + + E ++++ GT+ P+ F Q+L + E
Sbjct: 589 QGSLSESTLKFLLLNPAVHFAQVVK-ECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVV 647
Query: 467 -----HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLI 521
HVI I ++ G S L +++ RD + E+G + N+ +V G++
Sbjct: 648 EFSCGHVIPPDNIPL-VICSGISNQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVVC 706
Query: 522 FFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDT 581
FF SY + Q A W+ G L R+ KK EP+ + + Y ++
Sbjct: 707 FFSSYEYLRQVHAHWEK---GGLLG---RLAARKKIFQEPKSAHQVEQVLLAYSRCIQAC 760
Query: 582 S-----TSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQA 636
+ A+ +V GK+SEG++F+D+ GR VV+ GMPF + +++ K YLD
Sbjct: 761 GQERGQVTEALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTL 820
Query: 637 QSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKS 696
G+ G+ +AVNQ++GR IRH+ D+ +I+ D+R+A P +
Sbjct: 821 PRAPGQAPP-------GKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPVLA 873
Query: 697 QISLWIQPHIQCYSKFGDVVYTLTRFFREE 726
++ WI+ ++ + FG + + +F RE+
Sbjct: 874 KLPAWIRASVEVKATFGPAIAAVQKFHREK 903
Score = 128 (50.1 bits), Expect = 7.6e-47, Sum P(4) = 7.6e-47
Identities = 37/134 (27%), Positives = 62/134 (46%)
Query: 184 DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEA 243
D+E L+ +G+ CPY+ +R +V PY L+ R+ G+ ++ ++I DEA
Sbjct: 338 DMEQLLALGKEARACPYYRSRLAIPAAKLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEA 397
Query: 244 HNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLK 303
HNL S ++S L S+ ++ R G+ L N L+ +L
Sbjct: 398 HNLIDTITGMHSVEVSGSQLCQAHSQLLQYME----RYGKR----LKAKNLMYLKQILYL 449
Query: 304 LEKRIAEVPINSKE 317
LEK +A + N K+
Sbjct: 450 LEKFVAVLGGNIKQ 463
Score = 116 (45.9 bits), Expect = 7.6e-47, Sum P(4) = 7.6e-47
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
T K+ I FPF Y Q +M ++ + L+ + ESPTGTGK+L L+C L+W
Sbjct: 5 TQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSW 61
Score = 107 (42.7 bits), Expect = 7.6e-47, Sum P(4) = 7.6e-47
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNAC 150
I + SRTHSQL Q + E+K S + ++V LGSR+ LC++ +V L GS Q N+ C
Sbjct: 231 IYHCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVRSL-GSVQLINDRC 287
>UNIPROTKB|Q60452 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:10029 "Cricetulus griseus"
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0005675 "holo
TFIIH complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005819 "spindle" evidence=ISS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0006917 "induction of apoptosis" evidence=ISS] [GO:0006979
"response to oxidative stress" evidence=ISS] [GO:0007059
"chromosome segregation" evidence=ISS] [GO:0008022 "protein
C-terminus binding" evidence=ISS] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=ISS] [GO:0035315 "hair cell
differentiation" evidence=ISS] [GO:0043139 "5'-3' DNA helicase
activity" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0071817 "MMXD complex" evidence=ISS] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISS] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737 GO:GO:0007059
GO:GO:0006979 GO:GO:0006917 GO:GO:0046872 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0051539 GO:GO:0006366
GO:GO:0004003 GO:GO:0071817 GO:GO:0008022 GO:GO:0047485
GO:GO:0000075 GO:GO:0005675 GO:GO:0006283 TIGRFAMs:TIGR00604
GO:GO:0035315 GO:GO:0043139 CTD:2068 HOVERGEN:HBG051498
GO:GO:0033683 EMBL:U04968 EMBL:U04967 PIR:A55732
RefSeq:NP_001231320.1 GeneID:100689272 Uniprot:Q60452
Length = 760
Score = 354 (129.7 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 90/297 (30%), Positives = 156/297 (52%)
Query: 412 ASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
A+ L + C + +A++ F R + S+I+TSGTLSP+D + + L + P+ + +
Sbjct: 429 ANPILHFSCMDASLAIKPVFERFQ--SVIITSGTLSPLDIYPKILDFH-PVTMATFTMTL 485
Query: 471 SKQ-IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
++ + I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M
Sbjct: 486 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 545
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+ +A W I E I ++K +E + + +A+E Y ++ GA+
Sbjct: 546 ESTVASWYEQG------ILENIQRNKLLFIETQDGAETSVALEKYQEACENGR--GAILL 597
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLS 649
+V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q + ++ L+
Sbjct: 598 SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF----LT 653
Query: 650 FLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
F A R Q VGR IR + DYG ++F D+RFA ++ ++ WIQ H+
Sbjct: 654 F---------DAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHL 701
Score = 220 (82.5 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 79/300 (26%), Positives = 138/300 (46%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
+ G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 5 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRAFP 64
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYRPK 122
T +P I + +LR+++ E + P
Sbjct: 65 LEVTKLIYCSRT-----------------VPEI---EKVIEELRKLLSFYEQQEGEKLPF 104
Query: 123 M-VILGSREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRRCNHHSRVAD---YMKNNPH 177
+ + L SR+ LCIH EV+ LR G + C L + + + Y + + H
Sbjct: 105 LGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDAH 164
Query: 178 LGDEPI-----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVE 232
P+ +++DL +G+ G CPYF+ R ++V Y+YL+DP + E
Sbjct: 165 GRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKE 224
Query: 233 W-KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEA----KNCIDISSTRRGQSSDE 287
+ ++++FDEAHN++ +C D+ S +L+ L C S K + I T + DE
Sbjct: 225 LARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDE 284
>MGI|MGI:95413 [details] [associations]
symbol:Ercc2 "excision repair cross-complementing rodent
repair deficiency, complementation group 2" species:10090 "Mus
musculus" [GO:0000075 "cell cycle checkpoint" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005819 "spindle" evidence=ISO]
[GO:0005856 "cytoskeleton" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISO]
[GO:0006289 "nucleotide-excision repair" evidence=ISO;IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006917 "induction of apoptosis" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=ISO;IMP] [GO:0007059
"chromosome segregation" evidence=ISO] [GO:0007568 "aging"
evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0009411 "response to UV" evidence=IMP] [GO:0009650 "UV
protection" evidence=ISO;IMP] [GO:0009791 "post-embryonic
development" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0021510 "spinal cord development" evidence=IMP]
[GO:0022405 "hair cycle process" evidence=IMP] [GO:0030198
"extracellular matrix organization" evidence=IMP] [GO:0030282 "bone
mineralization" evidence=IMP] [GO:0032289 "central nervous system
myelin formation" evidence=IMP] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=IMP] [GO:0035315 "hair cell
differentiation" evidence=ISO;IMP] [GO:0040016 "embryonic cleavage"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISO] [GO:0043249 "erythrocyte maturation" evidence=IMP]
[GO:0043388 "positive regulation of DNA binding" evidence=IMP]
[GO:0043588 "skin development" evidence=IMP] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0048820 "hair follicle maturation" evidence=IMP]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0060218
"hematopoietic stem cell differentiation" evidence=IMP] [GO:0071817
"MMXD complex" evidence=ISO] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 MGI:MGI:95413 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005737 GO:GO:0006915 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0006979 GO:GO:0006917
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0007568
GO:GO:0001701 GO:GO:0001666 GO:GO:0045944 GO:GO:0030198
GO:GO:0040016 GO:GO:0051539 GO:GO:0006366 GO:GO:0009791
GO:GO:0060218 GO:GO:0004003 GO:GO:0035264 GO:GO:0071817
GO:GO:0021510 GO:GO:0030282 GO:GO:0000075 GO:GO:0043388
GO:GO:0008353 GO:GO:0009650 GO:GO:0005675 GO:GO:0019907
GO:GO:0006283 eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 GO:GO:0043249 EMBL:CH466639 HOGENOM:HOG000205390
KO:K10844 OMA:KDVDGKC CTD:2068 HOVERGEN:HBG051498 GO:GO:0033683
OrthoDB:EOG4BVRT2 GO:GO:0000441 GO:GO:0032289 GO:GO:0048820
EMBL:U97572 EMBL:AK004652 EMBL:AK082761 IPI:IPI00310721
RefSeq:NP_031975.2 UniGene:Mm.36524 ProteinModelPortal:O08811
SMR:O08811 STRING:O08811 PhosphoSite:O08811 PaxDb:O08811
PRIDE:O08811 Ensembl:ENSMUST00000062831 GeneID:13871 KEGG:mmu:13871
GeneTree:ENSGT00550000075092 InParanoid:Q8C487 NextBio:284788
Bgee:O08811 Genevestigator:O08811 GermOnline:ENSMUSG00000030400
Uniprot:O08811
Length = 760
Score = 355 (130.0 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
Identities = 90/297 (30%), Positives = 156/297 (52%)
Query: 412 ASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
A+ L + C + +A++ F R + S+I+TSGTLSP+D + + L + P+ + +
Sbjct: 429 ANPVLHFSCMDASLAIKPVFERFQ--SVIITSGTLSPLDIYPKILDFH-PVTMATFTMTL 485
Query: 471 SKQ-IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
++ + I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M
Sbjct: 486 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 545
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+ +A W I E I ++K +E + + +A+E Y ++ GA+
Sbjct: 546 ESTVASWYEQG------ILENIQRNKLLFIETQDGAETSVALEKYQEACENGR--GAILL 597
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLS 649
+V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q + ++ L+
Sbjct: 598 SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF----LT 653
Query: 650 FLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
F A R Q VGR IR + DYG ++F D+RFA ++ ++ WIQ H+
Sbjct: 654 F---------DAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHL 701
Score = 217 (81.4 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
Identities = 79/300 (26%), Positives = 138/300 (46%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
+ G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 5 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRAYP 64
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYRPK 122
T +P I + +LR+++ E + P
Sbjct: 65 LEVTKLIYCSRT-----------------VPEI---EKVIEELRKLLSFYEQQEGEKLPF 104
Query: 123 M-VILGSREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRRCNHHSRVAD---YMKNNPH 177
+ + L SR+ LCIH EV+ LR G + C L + + + Y + + H
Sbjct: 105 LGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIH 164
Query: 178 LGDEPI-----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVE 232
P+ +++DL +G+ G CPYF+ R ++V Y+YL+DP + E
Sbjct: 165 GRQMPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKE 224
Query: 233 W-KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEA----KNCIDISSTRRGQSSDE 287
+ ++++FDEAHN++ +C D+ S +L+ L C S K + I T + DE
Sbjct: 225 LARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDE 284
>RGD|1309109 [details] [associations]
symbol:Ercc2 "excision repair cross-complementing rodent repair
deficiency, complementation group 2" species:10116 "Rattus
norvegicus" [GO:0000075 "cell cycle checkpoint" evidence=IEA;ISO]
[GO:0000441 "SSL2-core TFIIH complex" evidence=IDA] [GO:0001666
"response to hypoxia" evidence=IEP] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005819 "spindle" evidence=ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006917 "induction of apoptosis" evidence=IEA;ISO] [GO:0006979
"response to oxidative stress" evidence=IEA;ISO] [GO:0007059
"chromosome segregation" evidence=IEA;ISO] [GO:0007568 "aging"
evidence=IEA;ISO] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008283 "cell proliferation"
evidence=IEA;ISO] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=IEA;ISO] [GO:0009411 "response to
UV" evidence=ISO] [GO:0009650 "UV protection" evidence=IEA;ISO]
[GO:0009791 "post-embryonic development" evidence=IEA;ISO]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0021510 "spinal cord
development" evidence=IEA;ISO] [GO:0022405 "hair cycle process"
evidence=ISO] [GO:0030198 "extracellular matrix organization"
evidence=IEA;ISO] [GO:0030282 "bone mineralization"
evidence=IEA;ISO] [GO:0032289 "central nervous system myelin
formation" evidence=IEA;ISO] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IEA;ISO] [GO:0035264 "multicellular
organism growth" evidence=IEA;ISO] [GO:0035315 "hair cell
differentiation" evidence=IEA;ISO] [GO:0040016 "embryonic cleavage"
evidence=IEA;ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA;ISO] [GO:0043139 "5'-3' DNA helicase
activity" evidence=IEA;ISO] [GO:0043249 "erythrocyte maturation"
evidence=IEA;ISO] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA;ISO] [GO:0043588 "skin development" evidence=IEA;ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0047485
"protein N-terminus binding" evidence=IEA;ISO] [GO:0048820 "hair
follicle maturation" evidence=IEA;ISO] [GO:0060218 "hematopoietic
stem cell differentiation" evidence=IEA;ISO] [GO:0071817 "MMXD
complex" evidence=IEA;ISO] [GO:0004672 "protein kinase activity"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 RGD:1309109 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005737 GO:GO:0006915 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0006979 GO:GO:0006917
GO:GO:0003677 GO:GO:0008283 GO:GO:0007568 GO:GO:0001701
GO:GO:0001666 GO:GO:0045944 GO:GO:0030198 GO:GO:0040016
GO:GO:0009791 GO:GO:0060218 GO:GO:0004003 GO:GO:0035264
GO:GO:0071817 GO:GO:0021510 GO:GO:0030282 GO:GO:0000075
EMBL:CH473979 GO:GO:0043388 GO:GO:0008353 GO:GO:0009650
GO:GO:0019907 GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 GO:GO:0043249 KO:K10844 CTD:2068 GO:GO:0033683
OrthoDB:EOG4BVRT2 GO:GO:0000441 GO:GO:0032289 GO:GO:0048820
GeneTree:ENSGT00550000075092 IPI:IPI00367025 RefSeq:NP_001166280.1
UniGene:Rn.41871 Ensembl:ENSRNOT00000024246 GeneID:308415
KEGG:rno:308415 NextBio:658821 Uniprot:D3ZEG9
Length = 760
Score = 352 (129.0 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 89/293 (30%), Positives = 154/293 (52%)
Query: 416 LSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQ- 473
L + C + +A++ F R + S+I+TSGTLSP+D + + L + P+ + + ++
Sbjct: 433 LHFSCMDASLAIKPVFERFQ--SVIITSGTLSPLDIYPKILDFH-PVTMATFTMTLARVC 489
Query: 474 IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCI 533
+ I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M+ +
Sbjct: 490 LCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTV 549
Query: 534 ACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCR 593
A W I E I ++K +E + + +A+E Y ++ GA+ +V R
Sbjct: 550 ASWYEQG------ILENIQRNKLLFIETQDGAETSVALEKYQEACENGR--GAILLSVAR 601
Query: 594 GKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSG 653
GKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q + ++ L+F
Sbjct: 602 GKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF----LTF--- 654
Query: 654 EDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
A R Q VGR IR + DYG ++F D+RFA ++ ++ WIQ H+
Sbjct: 655 ------DAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHL 701
Score = 219 (82.2 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 79/300 (26%), Positives = 138/300 (46%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
+ G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 5 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRAYP 64
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYRPK 122
T +P I + +LR+++ E + P
Sbjct: 65 LEVTKLIYCSRT-----------------VPEI---EKVIEELRKLLSFYEQQEGEKLPF 104
Query: 123 M-VILGSREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRRCNHHSRVAD---YMKNNPH 177
+ + L SR+ LCIH EV+ LR G + C L + + + Y + + H
Sbjct: 105 LGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDTH 164
Query: 178 LGDEPI-----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVE 232
P+ +++DL +G+ G CPYF+ R ++V Y+YL+DP + E
Sbjct: 165 GRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKE 224
Query: 233 W-KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEA----KNCIDISSTRRGQSSDE 287
+ ++++FDEAHN++ +C D+ S +L+ L C S K + I T + DE
Sbjct: 225 LARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDE 284
>TAIR|locus:2017894 [details] [associations]
symbol:AT1G79890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006310 "DNA
recombination" evidence=RCA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] [GO:0042138 "meiotic DNA double-strand
break formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] InterPro:IPR002464
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 EMBL:AC011717
UniGene:At.18069 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 HOGENOM:HOG000241266 OMA:NLGRCVV IPI:IPI00530666
PIR:A96830 RefSeq:NP_178107.1 UniGene:At.66890
ProteinModelPortal:Q9CA92 SMR:Q9CA92 STRING:Q9CA92 PaxDb:Q9CA92
PRIDE:Q9CA92 EnsemblPlants:AT1G79890.1 GeneID:844328
KEGG:ath:AT1G79890 TAIR:At1g79890 InParanoid:Q9CA92
PhylomeDB:Q9CA92 ProtClustDB:CLSN2681868 Genevestigator:Q9CA92
Uniprot:Q9CA92
Length = 882
Score = 393 (143.4 bits), Expect = 6.7e-46, Sum P(3) = 6.7e-46
Identities = 143/507 (28%), Positives = 240/507 (47%)
Query: 181 EPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIF 240
E +DIEDLV +GR CPY+ +R + D+V PY L+ R+ LG+ KNS++I
Sbjct: 293 EAMDIEDLVQLGREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSLKNSVVII 352
Query: 241 DEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAIL--- 297
DEAHNL AD + LT E +C S R Q+ N I+
Sbjct: 353 DEAHNL----ADTL-LSMHDAKLTVSQLEDIHCSIESYLGRFQNLLGAGNRRYIQIMLIL 407
Query: 298 -RALLLKL--EKRIAEVPI--NSKELGFTKP----GPYIYELLADLNITQETAYKLIDIV 348
RA L L ++ ++ V + +++ +KP IY+ L LNI I++V
Sbjct: 408 TRAFLKPLASDRNLSSVNVGLDTENPSKSKPCGACSMAIYDFLFSLNIDN------INLV 461
Query: 349 EVAAELLQEDKLQNKKSTTACRIESISNILKIIFRD--KGTAHSAYYRVHVREADANA-A 405
++ A ++E + +K S R+ ++ + + K T+ A+ + V + N
Sbjct: 462 KLLA-YIKESNIIHKVSGYGERVAAMLQKDPVAHEEMSKLTSFRAFSDMLVALTNNNGDG 520
Query: 406 DVLKGKASRTLSW-------WCFNPGIAMQEFSRL--EVGSIILTSGTLSPMDSFAQELK 456
++ + S + S + G + FS + E ++IL GTL P++ + L
Sbjct: 521 RIIISRTSSSTSGQHGGYIKYVMLTGAKL--FSEVVDEAHAVILAGGTLQPIEETRERL- 577
Query: 457 LNFPLRVENP-------HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIV 509
FP N H++ + I V GPSG + S+ +R SI QELG +
Sbjct: 578 --FPWLPSNQLQFFSCSHIVPPESIMPIAVSHGPSGQSFDFSHSSRSSIGMIQELGLLMS 635
Query: 510 NIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPL 569
N+ +VP+G+++FF S+ Q W N+ I RI K K+ EPR+++
Sbjct: 636 NLVAVVPEGIIVFFSSFEYETQVHTAWSNSG------ILRRIVKKKRVFREPRKNTEVEA 689
Query: 570 AIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKR 629
+ DY ++ S GA+ AV GKVSEG++F+D R VV+ G+P+ + +D ++ +
Sbjct: 690 VLRDYKEAIE--SERGAIMLAVVGGKVSEGINFSDSMCRCVVMVGLPYPSPSDIELLERI 747
Query: 630 EYLDLQAQSQGGEYKETKL--SFLSGE 654
++++ +A S + T + S+ SG+
Sbjct: 748 KHIEGRADSDSIKPSVTLVDDSYYSGD 774
Score = 276 (102.2 bits), Expect = 7.0e-33, Sum P(3) = 7.0e-33
Identities = 117/468 (25%), Positives = 208/468 (44%)
Query: 310 EVPINSKELGFTKPGPY--IYELLAD-LNITQETAY-KLIDIV-------EVAAELLQED 358
E P SK G Y ++ L D +N+ + AY K +I+ E A +LQ+D
Sbjct: 431 ENPSKSKPCGACSMAIYDFLFSLNIDNINLVKLLAYIKESNIIHKVSGYGERVAAMLQKD 490
Query: 359 KLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSW 418
+ +++ + + S++L + + G R+ + ++ + G+ + +
Sbjct: 491 PVAHEEMSKLTSFRAFSDMLVALTNNNGDG-----RIIISRTSSSTS----GQHGGYIKY 541
Query: 419 WCFNPGIAMQEFSRL--EVGSIILTSGTLSPMDSFAQELKLNFP---LRVEN-PHVITSK 472
G + FS + E ++IL GTL P++ + L P L+ + H++ +
Sbjct: 542 VMLT-GAKL--FSEVVDEAHAVILAGGTLQPIEETRERLFPWLPSNQLQFFSCSHIVPPE 598
Query: 473 QIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQC 532
I V GPSG + S+ +R SI QELG + N+ +VP+G+++FF S+ Q
Sbjct: 599 SIMPIAVSHGPSGQSFDFSHSSRSSIGMIQELGLLMSNLVAVVPEGIIVFFSSFEYETQV 658
Query: 533 IACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDT----------- 581
W N+ I RI K K+ EPR+++ + DY ++
Sbjct: 659 HTAWSNSG------ILRRIVKKKRVFREPRKNTEVEAVLRDYKEAIESERGAIMLAVVGG 712
Query: 582 STSGAVFFA--VCRGKVSEGLDFADHAG-----RAVVITGMPFATMTDPKVRLKRE-YLD 633
S + F+ +CR V GL + + R I G + P V L + Y
Sbjct: 713 KVSEGINFSDSMCRCVVMVGLPYPSPSDIELLERIKHIEGRADSDSIKPSVTLVDDSYYS 772
Query: 634 LQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAH-P 692
Q+ G K K G+++Y +AVNQ++GR IRH DY +I+ D R+++ P
Sbjct: 773 GDVQAGFGVLKSCKRR---GKEYYENLCMKAVNQSIGRAIRHEKDYASILLVDARYSNDP 829
Query: 693 SRKS-------QISLWIQPHIQCYSK-FGDVVYTLTRFFREERICGST 732
S+++ ++ WI+ + +K +GDV L +FF+ + + S+
Sbjct: 830 SKRTSHSHPSNKLPKWIKDRLIYSTKGYGDVHRLLHQFFKHKNVENSS 877
Score = 114 (45.2 bits), Expect = 6.7e-46, Sum P(3) = 6.7e-46
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 13 FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
FP++ Y Q+ +M + Q L ++LESPTGTGK+L ++C+ L W
Sbjct: 10 FPYKPYSIQIDFMNALYQFLDKGGVSMLESPTGTGKSLSIICSALQW 56
Score = 107 (42.7 bits), Expect = 6.7e-46, Sum P(3) = 6.7e-46
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRPKM--VILGSREQLCIHREVSLLRGSAQ-NNACRFL 153
+ + SRTHSQL Q ++EL+ + + K+ V LGSR+ LCI+ +V L + N C L
Sbjct: 185 VFFCSRTHSQLSQFVKELRKTVFAKKLKVVCLGSRKNLCINEDVLKLGNVTRINERCLDL 244
Query: 154 CKK 156
KK
Sbjct: 245 QKK 247
>UNIPROTKB|E2RGR5 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030496 "midbody" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0000922 "spindle
pole" evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:AAEX03015316
Ensembl:ENSCAFT00000024894 Uniprot:E2RGR5
Length = 908
Score = 374 (136.7 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 93/332 (28%), Positives = 163/332 (49%)
Query: 409 KGKASRT-LSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENP- 466
+G S++ L + NP + + + E ++++ GT+ P+ F ++L + E
Sbjct: 589 QGSLSQSSLKFLLLNPAVHFAQVVK-ECRAVVIAGGTMQPVSDFREQLLACAGVEAERVV 647
Query: 467 -----HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLI 521
HVI I I+ GPS L +Y+ R+ + E G + N+ +VP G++
Sbjct: 648 EFSCGHVIPPDNILPLIICSGPSSQQLEFTYQKRELPQMMDETGRILCNLCTVVPGGVVC 707
Query: 522 FFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLK-- 579
FFPSY Q A W + G L R+ KK EP++++ + +Y +K
Sbjct: 708 FFPSYEYQRQVYAHWDKS--GLLA----RLAVRKKIFQEPKRANQVEQVLMEYSRCIKCC 761
Query: 580 ---DTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQA 636
+ +GA+ +V GK+SEG++F+D GR VV+ GMP+ + P+++ K YLD
Sbjct: 762 GQAGGTVTGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMAYLDQTL 821
Query: 637 QSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKS 696
G+ G+ +AVNQ++GR IRH+ D+ +I+ D+R+A P
Sbjct: 822 PRVPGQPPP-------GKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPILE 874
Query: 697 QISLWIQPHIQCYSKFGDVVYTLTRFFREERI 728
++ WI+ ++ + FG T+ +F RE+ +
Sbjct: 875 KLPAWIRDRVEVRATFGPAFATMRKFHREKSV 906
Score = 128 (50.1 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 51/197 (25%), Positives = 83/197 (42%)
Query: 126 LGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHL-GDEPI- 183
LGS QL R + + R ++ R +K RR H + Y L D+ +
Sbjct: 275 LGS-VQLINDRCMEMQRSKHGSHKNRAEEEKPKRRRQEHQAACPFYNYEQLQLLRDQVLV 333
Query: 184 ---DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIF 240
DIE LV +G+ CPY+ +R +V PY L+ R+ G+ + +++
Sbjct: 334 GVKDIEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRLQGQVVVI 393
Query: 241 DEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRAL 300
DEAHNL S ++S L S+ ++ R G+ L N ++ +
Sbjct: 394 DEAHNLIDTITGIHSVEVSGSQLCQAHSQLLQYME----RYGKR----LKAKNLMYIKQI 445
Query: 301 LLKLEKRIAEVPINSKE 317
L LEK + + N K+
Sbjct: 446 LYLLEKFVTVLGGNVKQ 462
Score = 110 (43.8 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
T +I I FPF Y Q +M ++ + L+ + ESPTGTGK+L ++C L+W
Sbjct: 5 TQEIGDIHFPFPFTPYSIQKDFMAELYRVLEAGKIGIFESPTGTGKSLSVICGALSW 61
Score = 110 (43.8 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNAC 150
I Y SRTHSQL Q + E++ S + ++V LGSR+ LC++ +V L GS Q N+ C
Sbjct: 229 IYYCSRTHSQLAQFVHEVQRSPFGKDTRLVSLGSRQNLCVNEDVKTL-GSVQLINDRC 285
Score = 40 (19.1 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 176 PHLGDEPIDIEDLVNIGRTFGP 197
P L P I D V + TFGP
Sbjct: 871 PILEKLPAWIRDRVEVRATFGP 892
>UNIPROTKB|A8MX75 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 GO:GO:0006289
TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 HOVERGEN:HBG051498
EMBL:L47234 HGNC:HGNC:3434 ChiTaRS:ERCC2 IPI:IPI00442420
ProteinModelPortal:A8MX75 STRING:A8MX75 PRIDE:A8MX75
Ensembl:ENST00000391941 ArrayExpress:A8MX75 Bgee:A8MX75
Uniprot:A8MX75
Length = 706
Score = 353 (129.3 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 90/297 (30%), Positives = 156/297 (52%)
Query: 412 ASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
A+ L + C + +A++ F R + S+I+TSGTLSP+D + + L + P+ + +
Sbjct: 405 ANPILHFSCMDASLAIKPVFERFQ--SVIITSGTLSPLDIYPKILDFH-PVTMATFTMTL 461
Query: 471 SKQ-IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
++ + I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M
Sbjct: 462 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 521
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+ +A W I E I ++K +E + + +A+E Y ++ GA+
Sbjct: 522 ESTVASWYEQG------ILENIQRNKLLFIETQDGAETSVALEKYQEACENGR--GAILL 573
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLS 649
+V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q + ++ L+
Sbjct: 574 SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF----LT 629
Query: 650 FLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
F A R Q VGR IR + DYG ++F D+RFA ++ ++ WIQ H+
Sbjct: 630 F---------DAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHL 677
Score = 207 (77.9 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 68/255 (26%), Positives = 121/255 (47%)
Query: 25 MEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLXXXXXXXXXXXXXXX 84
M ++ ++L K + +LE P+GTGKT+ LL +A++++ T
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRT-------- 52
Query: 85 XXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYRPKM-VILGSREQLCIHREVSLL 141
+P I + +LR+++ E + P + + L SR+ LCIH EV+ L
Sbjct: 53 ---------VPEI---EKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPL 100
Query: 142 R-GSAQNNACRFLCKKGTNRRCNHHSRVAD---YMKNNPHLGDEPI-----DIEDLVNIG 192
R G + C L + H + + Y + + H + P+ +++DL +G
Sbjct: 101 RFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALG 160
Query: 193 RTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEW-KNSILIFDEAHNLEGICA 251
R G CPYF+ R ++V Y+YL+DP + E + ++++FDEAHN++ +C
Sbjct: 161 RRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCI 220
Query: 252 DAASFDLSSGLLTAC 266
D+ S +L+ L C
Sbjct: 221 DSMSVNLTRRTLDRC 235
>UNIPROTKB|Q92771 [details] [associations]
symbol:DDX12P "Putative ATP-dependent RNA helicase DDX12"
species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0007049
GO:GO:0004003 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 HOVERGEN:HBG058884 EMBL:AC092821 EMBL:AC141557
EMBL:U33834 IPI:IPI00023299 UniGene:Hs.447869 UniGene:Hs.504688
ProteinModelPortal:Q92771 SMR:Q92771 STRING:Q92771
PhosphoSite:Q92771 DMDM:182705254 PRIDE:Q92771
GeneCards:GC12M009720 HGNC:HGNC:2737 MIM:601151 neXtProt:NX_Q92771
InParanoid:Q92771 ArrayExpress:Q92771 CleanEx:HS_DDX12
Genevestigator:Q92771 Uniprot:Q92771
Length = 950
Score = 335 (123.0 bits), Expect = 2.9e-45, Sum P(4) = 2.9e-45
Identities = 88/320 (27%), Positives = 154/320 (48%)
Query: 409 KGKASR-TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENP- 466
+G S+ TL + NP + + + E ++++ GT+ P+ +F Q+L + E
Sbjct: 606 QGSLSQSTLKFLLLNPAVHFAQVVK-ECRAVVIAGGTMQPVSNFRQQLLACAGVEAERVV 664
Query: 467 -----HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLI 521
HVI I ++ G S L +++ RD + E+G + N+ +V G++
Sbjct: 665 EFSCGHVIPPDNILPLVICSGVSNQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVVC 724
Query: 522 FFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDT 581
FFPSY + Q A W+ G L R+ KK EP+ + + Y L+
Sbjct: 725 FFPSYEYLRQVHAHWEK---GGLLG---RLAARKKIFQEPKSAHQVEQVLLAYSRCLQAC 778
Query: 582 S-----TSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQA 636
+GA+ +V GK+SEG++F+D+ GR VV+ GMPF + +++ K YLD
Sbjct: 779 GQERGPVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTL 838
Query: 637 QSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKS 696
G+ G+ +AVNQ++GR IRH+ D+ +I+ D+R+A P +
Sbjct: 839 PRAPGQAHP-------GKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPVLA 891
Query: 697 QISLWIQPHIQCYSKFGDVV 716
++ WI+ ++ + FG +
Sbjct: 892 KLPAWIRARVEVKATFGPAI 911
Score = 128 (50.1 bits), Expect = 2.9e-45, Sum P(4) = 2.9e-45
Identities = 37/134 (27%), Positives = 62/134 (46%)
Query: 184 DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEA 243
D+E L+ +G+ CPY+ +R +V PY L+ R+ G+ ++ ++I DEA
Sbjct: 355 DMEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEA 414
Query: 244 HNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLK 303
HNL S ++S L S+ ++ R G+ L N L+ +L
Sbjct: 415 HNLIDTTTSMHSVEVSGSQLCQAHSQLLQYME----RYGKR----LKAKNLMYLKQILYL 466
Query: 304 LEKRIAEVPINSKE 317
LEK +A + N K+
Sbjct: 467 LEKFVAVLGGNIKQ 480
Score = 112 (44.5 bits), Expect = 2.9e-45, Sum P(4) = 2.9e-45
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNAC 150
I + SRTHSQL Q + E+K S + ++V LGSR+ LC++ +V L GS Q NN C
Sbjct: 248 IYHCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVRSL-GSVQLINNRC 304
Score = 83 (34.3 bits), Expect = 2.9e-45, Sum P(4) = 2.9e-45
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 24 YMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
+M ++ + L+ + ESPTGTGK+L L+C L+W
Sbjct: 45 FMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSW 80
>UNIPROTKB|F1PMH9 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 GO:GO:0006289 TIGRFAMs:TIGR00604
OMA:KDVDGKC GeneTree:ENSGT00550000075092 EMBL:AAEX03000876
Ensembl:ENSCAFT00000007249 Uniprot:F1PMH9
Length = 771
Score = 342 (125.4 bits), Expect = 6.3e-45, Sum P(2) = 6.3e-45
Identities = 88/297 (29%), Positives = 152/297 (51%)
Query: 412 ASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
A+ L + C + +A++ F R + S+I+TSGTLSP+D + + L + P+ + +
Sbjct: 441 ANPILHFSCMDASLAIKPVFERFQ--SVIITSGTLSPLDIYPKILDFH-PVTMATFTMTL 497
Query: 471 SKQ-IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
++ + I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M
Sbjct: 498 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 557
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+ +A W I E I ++K +E + + +A+E Y ++ GA+
Sbjct: 558 ESTVASWYEQG------ILENIQRNKLLFIETQDGAETSVALEKYQEACENGR--GAILL 609
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLS 649
+V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q +
Sbjct: 610 SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRN--------- 660
Query: 650 FLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
D+ A R Q VG IR + DYG ++F D+RFA ++ ++ WIQ H+
Sbjct: 661 -----DFLTLDAMRHAAQCVGGAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHL 712
Score = 217 (81.4 bits), Expect = 6.3e-45, Sum P(2) = 6.3e-45
Identities = 73/275 (26%), Positives = 130/275 (47%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
+ G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 17 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYP 76
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYRPK 122
T +P I + +LR+++ E + P
Sbjct: 77 LEVTKLIYCSRT-----------------VPEI---EKVIEELRKLLNFYEKQEGEKLPF 116
Query: 123 M-VILGSREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRRCNHHSRVAD---YMKNNPH 177
+ + L SR+ LCIH EV LR G + C L + S + Y + + H
Sbjct: 117 LGLALSSRKNLCIHPEVMPLRFGKDVDGKCHSLTASYVRAQYQQDSSLPHCRFYEEFDVH 176
Query: 178 LGDEPI-----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVE 232
P+ +++DL +G+ G CPYF+ R ++V Y+YL+DP + + E
Sbjct: 177 GRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKE 236
Query: 233 W-KNSILIFDEAHNLEGICADAASFDLSSGLLTAC 266
+ ++++FDEAHN++ +C D+ S +++ L C
Sbjct: 237 LARKAVVVFDEAHNIDNVCIDSMSVNITRRTLDRC 271
>UNIPROTKB|E1BL06 [details] [associations]
symbol:E1BL06 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030496 "midbody" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000922 "spindle pole"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0003677 GO:GO:0000790 GO:GO:0004003 GO:GO:0030496
GO:GO:0000922 InterPro:IPR014001 SMART:SM00487
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:DAAA02014574
EMBL:DAAA02014575 EMBL:DAAA02014576 EMBL:DAAA02014577
IPI:IPI00707607 Ensembl:ENSBTAT00000009329 Uniprot:E1BL06
Length = 913
Score = 310 (114.2 bits), Expect = 3.1e-44, Sum P(4) = 3.1e-44
Identities = 90/343 (26%), Positives = 166/343 (48%)
Query: 409 KGKASRT-LSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENP- 466
+G S++ L + NP + + + E ++++ GT+ P+ F ++L + E
Sbjct: 586 QGSLSQSSLKFLLLNPAVHFAQVVK-ECRAVVIAGGTMQPVSDFREQLLAGAGVEAERVV 644
Query: 467 -----HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLI 521
HVI I I+ GPS +L+ +Y+ R + E G + N+ +VP G++
Sbjct: 645 EFSCGHVIPPDHILPLIICSGPSNQMLDFTYQKRGLPQMMDETGRILCNLCNVVPGGVVC 704
Query: 522 FFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDT 581
FFPSY Q W+ + G L R+ KK EPR+++ + +Y +K
Sbjct: 705 FFPSYEYQHQVCTHWEKS--GLLA----RLTIRKKIFQEPRKANRVEQVLLEYSRCIKHC 758
Query: 582 -----STSGAVFFAVCRGKVSEGLDFADHAGR------AVVITGM--PFATMTDPKVRLK 628
+ +GA+ +V GK+SEG++F+D GR A V+ G+ P ++ +
Sbjct: 759 GQAQGTETGALLLSVVGGKMSEGINFSDDLGRPQRDGRASVLLGVFVPSPVVSAAGAH-E 817
Query: 629 REYLDLQAQSQG-GEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDE 687
+ +A +G G+ + K+ +AVNQ++GR IRH+ D+ +I+ D+
Sbjct: 818 AHWSRPRASPRGPGQARPGKVLV-------ENLCMKAVNQSIGRAIRHQKDFASIVLLDQ 870
Query: 688 RFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREER-IC 729
R+A P+ ++++ WI+ ++ + FG L +F RE+ +C
Sbjct: 871 RYASPAIQAKLPAWIRDRVEVKATFGPAFAALRKFHREKAGLC 913
Score = 120 (47.3 bits), Expect = 3.1e-44, Sum P(4) = 3.1e-44
Identities = 36/134 (26%), Positives = 58/134 (43%)
Query: 184 DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEA 243
D+E LV +G CPY+ R +V PY L+ R+ G+ + +++ DEA
Sbjct: 334 DVEQLVALGEEAQACPYYGGRFAIPAAQLVVLPYQMLLHAPTRQAAGIRLQGQVVVIDEA 393
Query: 244 HNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLK 303
HNL + S ++ L S+ + T R + L N ++ LL
Sbjct: 394 HNLIDTITNIHSVEVRGSQLCQAHSQL-----LQYTER---YGKRLKAKNLMYIKQLLYL 445
Query: 304 LEKRIAEVPINSKE 317
LEK +A + N K+
Sbjct: 446 LEKFVAVLGGNIKQ 459
Score = 115 (45.5 bits), Expect = 3.1e-44, Sum P(4) = 3.1e-44
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
T + GI FPF Y Q +M + Q L+ + ESPTGTGK+L L+C L+W
Sbjct: 5 TQEAGGIHFPFPFTPYAIQKDFMAALYQVLEAGKIGIFESPTGTGKSLSLICGALSW 61
Score = 104 (41.7 bits), Expect = 3.1e-44, Sum P(4) = 3.1e-44
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNAC 150
I Y SRTHSQL Q + E++ S + ++V LGSR+ LC++ +V +GS Q N+ C
Sbjct: 226 IYYCSRTHSQLAQFVHEVQKSPFGQDTRLVSLGSRQNLCVNGDVR--KGSVQLINDRC 281
Score = 38 (18.4 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 182 PIDIEDLVNIGRTFGP 197
P I D V + TFGP
Sbjct: 882 PAWIRDRVEVKATFGP 897
>RGD|1306675 [details] [associations]
symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000922 "spindle pole" evidence=ISO] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0007062 "sister chromatid cohesion"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0030496 "midbody" evidence=ISO]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 RGD:1306675
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677 GO:GO:0000790
GO:GO:0004003 GO:GO:0030496 GO:GO:0000922 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 GO:GO:0007062
OrthoDB:EOG4B5P4M IPI:IPI00765140 Ensembl:ENSRNOT00000016536
UCSC:RGD:1306675 Uniprot:D3ZT96
Length = 882
Score = 364 (133.2 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 91/323 (28%), Positives = 157/323 (48%)
Query: 415 TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQEL------KLNFPLRVENPHV 468
+L + NP + + + E ++++ GT+ P+ F ++L + + + HV
Sbjct: 568 SLKFLLLNPAVHFAQVVK-ECRALVIAGGTMQPVSDFREQLLACSGVEASRVVEFSCGHV 626
Query: 469 ITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYL 528
I I I+ GPS L +Y+ R+ + +E G + N+ +VP G++ F PSY
Sbjct: 627 IPPDNILPLIICSGPSNQQLEFTYQRRELPQMMEETGRILCNLCNVVPGGMVCFLPSYEY 686
Query: 529 MDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTS---- 584
+ Q A W T G L R+ KK EP+++S + Y + S S
Sbjct: 687 LRQVHAHWDKT--GLLA----RLSVRKKIFQEPKRASQVEQVLTAYSTCIASCSHSEGHL 740
Query: 585 -GAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEY 643
GA+ +V GK+SEG++F+D GR VV+ GMP+ + P+++ K YLD G+
Sbjct: 741 TGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMAYLDQTIPRTHGQP 800
Query: 644 KETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQ 703
G +A+NQ++GR IRH+ D+ +I+ D R+A PS +++ WI+
Sbjct: 801 PP-------GTVLIENLCMKAINQSIGRAIRHQKDFASIVLLDHRYARPSILAKLPAWIR 853
Query: 704 PHIQCYSKFGDVVYTLTRFFREE 726
++ + FG + +F RE+
Sbjct: 854 DRVEVKATFGPAFAAMRKFHREK 876
Score = 118 (46.6 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 64/261 (24%), Positives = 107/261 (40%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNY--RPKMVILGSREQLCIHREVSLLRGSAQ--NNAC-- 150
I Y SRTHSQL Q ++E++ S + ++V LGSR+ LC++ +V L GS N+ C
Sbjct: 201 IYYCSRTHSQLAQFVREVQKSPFGKETRLVSLGSRQSLCVNEDVKSL-GSVHLMNDRCVD 259
Query: 151 --RFLCKK---GTNR--RCNHHSRVADYMKNNPH---LGDEPI----DIEDLVNIGRTFG 196
R KK G ++ R + + N+ L DE + D+E LV +G+
Sbjct: 260 MQRRKHKKMRIGEDKPKRRRQKMQASCPFYNHEQMELLRDEILLEVKDMEQLVALGKEAQ 319
Query: 197 PCPYFMTR-ELQKTVDIVFAPYNYLIDPWFRK-GLGVEWKNSILIFDEAHNLEGICADAA 254
CPY+ +R + ++ + W +G + I DE H +
Sbjct: 320 ACPYYGSRFAIPAAQQVLVILLLRAVLTWMSLLYVGAXXQGQXXIXDEXHXXXDXXXNIX 379
Query: 255 SFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPIN 314
+ L S+ ++ R L N ++ +L L+K +A + N
Sbjct: 380 QXQVCGKQLCQAHSQLLQYMERYRKR--------LKAKNLMYIKQILYLLDKFVAVLGGN 431
Query: 315 SKELGFTKPGPYIYELLADLN 335
K+ T+ P L +N
Sbjct: 432 VKQNPSTQSLPQTGSELQSIN 452
Score = 112 (44.5 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 8 GIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
GI FPF Y Q +M ++ + L+ + ESPTGTGK+L L+C L+W
Sbjct: 10 GIHFPFPFPPYPIQKDFMAELYKVLEAGKIGIFESPTGTGKSLSLICGALSW 61
>TAIR|locus:2014525 [details] [associations]
symbol:UVH6 "ULTRAVIOLET HYPERSENSITIVE 6" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0009408
"response to heat" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0006457 "protein folding" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0010212 "response to ionizing radiation" evidence=RCA]
[GO:0010286 "heat acclimation" evidence=RCA] [GO:0042542 "response
to hydrogen peroxide" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009411 "response to UV" evidence=IMP] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0005634 GO:GO:0009411 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
GO:GO:0051539 GO:GO:0009408 GO:GO:0004003 GO:GO:0006289
eggNOG:COG1199 TIGRFAMs:TIGR00604 EMBL:AY090788 EMBL:AF188623
EMBL:AC005278 EMBL:AY062471 EMBL:AY090915 EMBL:BT010344
IPI:IPI00543586 PIR:C86163 RefSeq:NP_171818.1 RefSeq:NP_849584.1
UniGene:At.10863 ProteinModelPortal:Q8W4M7 SMR:Q8W4M7 IntAct:Q8W4M7
STRING:Q8W4M7 PaxDb:Q8W4M7 PRIDE:Q8W4M7 EnsemblPlants:AT1G03190.1
EnsemblPlants:AT1G03190.2 GeneID:839557 KEGG:ath:AT1G03190
GeneFarm:4445 TAIR:At1g03190 HOGENOM:HOG000205390 InParanoid:Q8W4M7
KO:K10844 OMA:KDVDGKC PhylomeDB:Q8W4M7 ProtClustDB:CLSN2679645
Genevestigator:Q8W4M7 GermOnline:AT1G03190 Uniprot:Q8W4M7
Length = 758
Score = 335 (123.0 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 96/291 (32%), Positives = 151/291 (51%)
Query: 420 CFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQ--IWA 476
C + +A++ F R + S+++TSGTLSP+D + + LNF V ++ + I
Sbjct: 437 CHDASLAIKPVFDRFQ--SVVITSGTLSPIDLYPR--LLNFTPVVSRSFKMSMTRDCICP 492
Query: 477 GIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACW 536
++ G +++ + R + G +V + IVPDG++ FF SY MD IA W
Sbjct: 493 MVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDGIIATW 552
Query: 537 KNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKV 596
N T I + I + K +E + LA+++Y + D GAVFF+V RGKV
Sbjct: 553 ------NETGILKEIMQQKLVFIETQDVVETTLALDNYR-RACDCGR-GAVFFSVARGKV 604
Query: 597 SEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDW 656
+EG+DF H GR VV+ G+PF +R + EYL Q + G++ L+F
Sbjct: 605 AEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDF----LTF------ 654
Query: 657 YNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQ 707
A R Q VGRVIR + DYG +IF D+R++ ++S++ WI H++
Sbjct: 655 ---DALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR 702
Score = 211 (79.3 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 70/266 (26%), Positives = 122/266 (45%)
Query: 4 YKIRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKS 62
+KI + V FP++ Y Q YM ++ ++L K + LLE PTGTGKT+ LL ++R S
Sbjct: 3 FKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYRLS 62
Query: 63 LGSFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQ-ELKTSNYRP 121
S + T+ +T +L+ + +++ +
Sbjct: 63 RPD-SPIKLVYCTR-------------------TVHEMEKTLGELKLLHDYQVRHLGTQA 102
Query: 122 KMVILG--SREQLCIHREVSLLRG-SAQNNACRFLCKKGTNRRCNHHSRV--ADYMKNNP 176
K++ LG SR+ LC++ +V + + ACR + V D+ +N
Sbjct: 103 KILALGLSSRKNLCVNTKVLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYE 162
Query: 177 HLGDEPI------DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLG 230
+ + +EDL G+ G CPYF+ R + + +++ Y YL+DP +
Sbjct: 163 KAAENALLPPGVYTLEDLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFIS 222
Query: 231 VEW-KNSILIFDEAHNLEGICADAAS 255
E K S+++FDEAHN++ +C +A S
Sbjct: 223 KELQKESVVVFDEAHNIDNVCIEALS 248
>UNIPROTKB|E7EVE9 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604 EMBL:L47234
HGNC:HGNC:3434 ChiTaRS:ERCC2 IPI:IPI00745781
ProteinModelPortal:E7EVE9 Ensembl:ENST00000391944 UCSC:uc010ejz.2
ArrayExpress:E7EVE9 Bgee:E7EVE9 Uniprot:E7EVE9
Length = 682
Score = 353 (129.3 bits), Expect = 2.0e-43, Sum P(4) = 2.0e-43
Identities = 90/297 (30%), Positives = 156/297 (52%)
Query: 412 ASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
A+ L + C + +A++ F R + S+I+TSGTLSP+D + + L + P+ + +
Sbjct: 351 ANPILHFSCMDASLAIKPVFERFQ--SVIITSGTLSPLDIYPKILDFH-PVTMATFTMTL 407
Query: 471 SKQ-IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
++ + I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M
Sbjct: 408 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 467
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+ +A W I E I ++K +E + + +A+E Y ++ GA+
Sbjct: 468 ESTVASWYEQG------ILENIQRNKLLFIETQDGAETSVALEKYQEACENGR--GAILL 519
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLS 649
+V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q + ++ L+
Sbjct: 520 SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF----LT 575
Query: 650 FLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
F A R Q VGR IR + DYG ++F D+RFA ++ ++ WIQ H+
Sbjct: 576 F---------DAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHL 623
Score = 104 (41.7 bits), Expect = 2.0e-43, Sum P(4) = 2.0e-43
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 211 DIVFAPYNYLIDPWFRKGLGVEW-KNSILIFDEAHNLEGICADAASFDLSSGLLTAC 266
++V Y+YL+DP + E + ++++FDEAHN++ +C D+ S +L+ L C
Sbjct: 125 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRC 181
Score = 100 (40.3 bits), Expect = 2.0e-43, Sum P(4) = 2.0e-43
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKS 62
+ G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 5 VDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 62
Score = 68 (29.0 bits), Expect = 2.0e-43, Sum P(4) = 2.0e-43
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 97 ILYTSRTHSQLRQVIQEL-KTSNYRPKM---------VILGSREQLCIHREV 138
++Y SRT ++ +VI+EL K N+ K + L SR+ LCIH E+
Sbjct: 70 LIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEI 121
>UNIPROTKB|F1SK84 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030496 "midbody" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000922 "spindle pole"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:CU861969
Ensembl:ENSSSCT00000000809 OMA:HQISKRD Uniprot:F1SK84
Length = 682
Score = 347 (127.2 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
Identities = 87/325 (26%), Positives = 158/325 (48%)
Query: 409 KGKASRT-LSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENP- 466
+G S++ L + NP + + + E ++++ GT+ P+ F ++L + E
Sbjct: 357 QGSLSQSSLKFLLLNPAVHFAQVVK-ECRAVVIAGGTMQPVSDFREQLLACAGVEAERVV 415
Query: 467 -----HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLI 521
HVI I ++ GP+ L +Y+ R+ + E G + N+ +VP G++
Sbjct: 416 EFSCGHVIPPDNILPLVICSGPANQQLEFTYQKRELPQMMDETGRILCNLCNVVPGGVVC 475
Query: 522 FFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLK-- 579
FFPSY Q A W + G L R+ KK EP++++ +++Y +K
Sbjct: 476 FFPSYEYQRQVHAHWDRS--GLLA----RLAVRKKIFQEPKRANQVEQVLKEYSRCIKHC 529
Query: 580 ---DTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQA 636
+ +GA+ +V GK+SEG++F+D GR VV+ GMP+ + +++ K YLD
Sbjct: 530 GQAEGMVTGALLLSVVGGKMSEGINFSDSLGRCVVMVGMPYPNIRSAELQEKMAYLDQTL 589
Query: 637 QSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKS 696
G+ G+ +AVNQ++GR IRH+ D+ +I+ D+R+A P +
Sbjct: 590 PRAPGQAAP-------GKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPILA 642
Query: 697 QISLWIQPHIQCYSKFGDVVYTLTR 721
++ WI+ ++ + FG L +
Sbjct: 643 KLPAWIRDRVEVKATFGPAFAALRK 667
Score = 125 (49.1 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
Identities = 36/134 (26%), Positives = 61/134 (45%)
Query: 184 DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEA 243
DIE LV +G+ CPY+ +R +V PY ++ R+ G+ + +++ DEA
Sbjct: 108 DIEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMVLHAATRQAAGIRLQGQVVLVDEA 167
Query: 244 HNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLK 303
HNL S ++S L S+ ++ R G+ L N ++ +L
Sbjct: 168 HNLMDTITGIHSVEVSGSQLCQAHSQLLQYME----RYGKR----LKAKNLMYIKQILYL 219
Query: 304 LEKRIAEVPINSKE 317
LEK +A + N K+
Sbjct: 220 LEKFVAVLGGNVKQ 233
Score = 106 (42.4 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNAC 150
I Y SRTHSQL Q + E++ S + ++V LGSR+ LC++ +V L GS Q N+ C
Sbjct: 2 IYYCSRTHSQLAQFVHEVQRSPFGKDTRLVSLGSRQNLCVNDDVRKL-GSVQLINDRC 58
Score = 40 (19.1 bits), Expect = 1.2e-33, Sum P(4) = 1.2e-33
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 301 LLKLEKRIAEVPINSKELGFTKP 323
L L+ + E P+ +E G +P
Sbjct: 307 LQSLQPGVTEAPVEEEEAGAPRP 329
Score = 38 (18.4 bits), Expect = 1.2e-33, Sum P(4) = 1.2e-33
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 273 CIDISSTRRGQSSDETLNP 291
C+D+ +RR +S E P
Sbjct: 58 CVDMQRSRREKSIAEEAKP 76
>UNIPROTKB|F1NN99 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0030496 "midbody"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:AADN02006472
EMBL:AADN02006473 IPI:IPI00575083 IntAct:F1NN99
Ensembl:ENSGALT00000021158 Uniprot:F1NN99
Length = 908
Score = 373 (136.4 bits), Expect = 2.6e-42, Sum P(3) = 2.6e-42
Identities = 96/322 (29%), Positives = 159/322 (49%)
Query: 415 TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNF----PLRVEN---PH 467
+L + NP + + + E ++I+ GT+ P+ F ++L L++ P R+ H
Sbjct: 599 SLKFLLLNPAVHFAKVVK-ECRAVIIAGGTMQPVADFREQL-LSYAGVDPARIVEFSCGH 656
Query: 468 VITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYY 527
VI + I I+ GPS L +Y+ RD + E G + N+ +VP G++ FFPSY
Sbjct: 657 VIPPENILPIILCSGPSNQQLEFTYQTRDLPQMMDETGRILCNLCNVVPGGVVCFFPSYD 716
Query: 528 LMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSG-- 585
Q A W+ T G LT R+ KK EP++++ + +Y +K +G
Sbjct: 717 YEKQVYAHWEKT--GLLT----RLATKKKIFQEPKKANQVEQVLAEYAKCIKRCGQAGGQ 770
Query: 586 ---AVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGE 642
A+ +V GK+SEG++F+D GR V++ GMP+ + P+++ K +LD +
Sbjct: 771 MTGALLLSVVGGKMSEGINFSDDLGRCVIMVGMPYPNIKSPELQEKMTWLDKTMPRSASQ 830
Query: 643 YKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWI 702
L +AVNQ++GR IRH+ DY +I+ D R+A P+ +++ WI
Sbjct: 831 APSRVL--------IENLCMKAVNQSIGRAIRHQKDYASILLLDHRYARPAILNKLPQWI 882
Query: 703 QPHIQCYSKFGDVVYTLTRFFR 724
+ IQ FG L +F R
Sbjct: 883 RERIQVKPAFGSAFAELRKFHR 904
Score = 140 (54.3 bits), Expect = 2.6e-42, Sum P(3) = 2.6e-42
Identities = 47/164 (28%), Positives = 71/164 (43%)
Query: 122 KMVILGSREQLCIHREVSLLRG-SAQNNACRFLCK-----------KGTNRRCNHHSRVA 169
++V LGSR+ LC++ EV L N+ C + K +G RR +
Sbjct: 257 RLVSLGSRQNLCVNEEVRRLGALQLINDRCTEMQKNKHEKKSDAEVEGKKRRVSRTVCPF 316
Query: 170 DYMKNNPHLGDEPI----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWF 225
+ L DE + DIE LV +G+ CPY+ +R +V PY L+
Sbjct: 317 YSYEQMQFLRDEVLVEVKDIEQLVTLGKETKACPYYGSRYAIPAAQLVVLPYQMLLHEAT 376
Query: 226 RKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISE 269
R G+ K+ ++I DEAHNL S ++S L S+
Sbjct: 377 RSAAGIILKDQVVIIDEAHNLIDTITCIYSAEVSGSQLCCAHSQ 420
Score = 108 (43.1 bits), Expect = 5.6e-39, Sum P(3) = 5.6e-39
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNACRF 152
I Y SRTHSQL Q + E++ S + ++V LGSR+ LC++ EV L G+ Q N+ C
Sbjct: 230 IYYCSRTHSQLSQFVHEVQKSPFGKDTRLVSLGSRQNLCVNEEVRRL-GALQLINDRC-- 286
Query: 153 LCKKGTNRRCNHHSRVAD 170
T + N H + +D
Sbjct: 287 -----TEMQKNKHEKKSD 299
Score = 69 (29.3 bits), Expect = 2.6e-42, Sum P(3) = 2.6e-42
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 13 FPFEAYDCQLVYMEKVIQSLQNK---CNALLESPTGT-GKTLCLLCATLAW 59
FP+ Y Q +M + +L+ C + E P G GK+L L+C L+W
Sbjct: 15 FPYTPYRIQEQFMAALYAALEAGVVICVCVEEDPHGPRGKSLSLICGALSW 65
>WB|WBGene00010839 [details] [associations]
symbol:chl-1 species:6239 "Caenorhabditis elegans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0003677 GO:GO:0004003 eggNOG:COG1199
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 HOGENOM:HOG000241266
OMA:NLGRCVV GeneTree:ENSGT00530000063199 EMBL:Z49128
RefSeq:NP_499295.2 ProteinModelPortal:Q21489 SMR:Q21489
STRING:Q21489 PaxDb:Q21489 EnsemblMetazoa:M03C11.2 GeneID:176457
KEGG:cel:CELE_M03C11.2 UCSC:M03C11.2 CTD:176457 WormBase:M03C11.2
InParanoid:Q21489 NextBio:892664 Uniprot:Q21489
Length = 830
Score = 247 (92.0 bits), Expect = 9.9e-41, Sum P(3) = 9.9e-41
Identities = 56/151 (37%), Positives = 83/151 (54%)
Query: 573 DYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYL 632
D ++ TS GA+ FAV GK+SEG++F D GRAV++ G+P+ T ++R + ++L
Sbjct: 688 DRFSRAAKTS-KGAILFAVVGGKMSEGINFCDELGRAVIVIGLPYPNKTSVELRERMKFL 746
Query: 633 DLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHP 692
D Q + GG + L Y AVNQA+GR IRHR DY A+ D+R+A
Sbjct: 747 DTQMPN-GG-------NLL-----YESLCMHAVNQAIGRAIRHRRDYAAVYLFDDRYAKE 793
Query: 693 SRKSQISLWIQPHIQCYSKFGDVVYTLTRFF 723
S + ++S WI Q FG+++ FF
Sbjct: 794 STRRKLSTWIGDRTQVKLGFGEIIRKTRSFF 824
Score = 196 (74.1 bits), Expect = 9.9e-41, Sum P(3) = 9.9e-41
Identities = 72/274 (26%), Positives = 118/274 (43%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLR-GSAQNNACRFLCK 155
I Y SRTHSQL Q+ +EL + ++P++V SR LC++ EV L+ N C L K
Sbjct: 186 IFYASRTHSQLEQLAEELAKTRFQPRIVTCASRGTLCVNEEVKKLKLNHLINEKCMELRK 245
Query: 156 KGTNRRCNHHSRVADYMKNNPHLGDE-----PIDIEDLVN---------------IGRTF 195
G + + K IED+VN G+
Sbjct: 246 NGMSEKEKVQKLEKGTTKKTKTCATSCEFYNSTQIEDVVNGVLSNKLKSTLEVSKQGKLS 305
Query: 196 GPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAAS 255
CPYF TR+ +V PY L+ RK G+E K+++++ DEAHN+ + S
Sbjct: 306 NGCPYFATRKSVPQCQLVLLPYQVLLHDGTRKAWGIELKDNVIVLDEAHNVLNTISSLYS 365
Query: 256 FDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINS 315
++S+ LT + + + ++ + + L N ++ L K + + S
Sbjct: 366 AEISTKSLTLALRLIR---EYNAHYKLK-----LLAHNLLYMKQLESLTSKMLIFLNSQS 417
Query: 316 KELGFTKPGPYIYELLADLNITQETAYKLIDIVE 349
KE T + +L +LNI + +KL + +E
Sbjct: 418 KEDVMT-----MAQLARNLNILEINLFKLAEYME 446
Score = 190 (71.9 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 66/239 (27%), Positives = 104/239 (43%)
Query: 407 VLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELK-----LNFPL 461
V K + NP + E + IL GT+ P + L +
Sbjct: 527 VEKSATEAKFRFMLLNPADRLSEVVT-SARATILVGGTMEPAQLLVETLSRGSIGADSIR 585
Query: 462 RVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLI 521
R HVI Q+ A V G +Y+ R + + L +I + +P+G++I
Sbjct: 586 RFSCCHVIDDSQLLAVTVERTVDGKPFQLTYQTRGADTTLRSLATSIQALIPHIPNGVVI 645
Query: 522 FFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDT 581
F PSY + K G I +RI + K E RQ + + D ++ T
Sbjct: 646 FVPSYDFLFNFQK--KMKEFG----ILKRIEEKKAVFTESRQPTS---DVWDRFSRAAKT 696
Query: 582 STSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQG 640
S GA+ FAV GK+SEG++F D GRAV++ G+P+ T ++R + ++LD Q + G
Sbjct: 697 S-KGAILFAVVGGKMSEGINFCDELGRAVIVIGLPYPNKTSVELRERMKFLDTQMPNGG 754
Score = 130 (50.8 bits), Expect = 9.9e-41, Sum P(3) = 9.9e-41
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 10 DVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
+ FPF+ YD QL M ++ Q ++ + + ESPTGTGK+L +LC+T+ W
Sbjct: 3 EFSFPFQPYDIQLNLMREIRQCIEQRKIGIFESPTGTGKSLSVLCSTMTW 52
>CGD|CAL0002854 [details] [associations]
symbol:RAD3 species:5476 "Candida albicans" [GO:0003678 "DNA
helicase activity" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] [GO:0010525 "regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0000019 "regulation
of mitotic recombination" evidence=IEA] [GO:0070816
"phosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=IEA] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
CGD:CAL0002854 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 EMBL:AACQ01000024 GO:GO:0003678
GO:GO:0006289 eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K10844
RefSeq:XP_720409.1 RefSeq:XP_888639.1 ProteinModelPortal:Q5AFE9
STRING:Q5AFE9 GeneID:3638014 GeneID:3704106 KEGG:cal:CaO19.7119
KEGG:cal:CaO19_7119 Uniprot:Q5AFE9
Length = 765
Score = 294 (108.6 bits), Expect = 4.2e-40, Sum P(3) = 4.2e-40
Identities = 70/218 (32%), Positives = 115/218 (52%)
Query: 416 LSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQI 474
L + C + IA++ F R S+I+TSGT+SP+D + + LK ++ + +
Sbjct: 434 LHFTCLDASIAIKPVFDRFS--SVIITSGTISPLDMYPKMLKFETVIQESYAMTLARRSF 491
Query: 475 WAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIA 534
IV G ++S + R+ + G+ ++ A+I PDG+++FFPSY M+ I+
Sbjct: 492 LPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIIS 551
Query: 535 CWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594
W+ S G L +W KHK +VE + LA+E Y ++ GAV +V RG
Sbjct: 552 MWQ--SMGVLDEVW----KHKLILVETPDAQETSLALETYRKAC--SNGRGAVLLSVARG 603
Query: 595 KVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYL 632
KVSEG+DF H GR V++ G+PF ++ + E++
Sbjct: 604 KVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFM 641
Score = 199 (75.1 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 56/156 (35%), Positives = 83/156 (53%)
Query: 547 IWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHA 606
+ + + KHK +VE + LA+E Y ++ GAV +V RGKVSEG+DF H
Sbjct: 558 VLDEVWKHKLILVETPDAQETSLALETYRKAC--SNGRGAVLLSVARGKVSEGIDFDHHY 615
Query: 607 GRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVN 666
GR V++ G+PF T+ ++ LK L+ + KE FLS + A R
Sbjct: 616 GRTVLMIGIPFQ-YTESRI-LKAR---LEFMRDHFQIKEN--DFLSFD------AMRHAA 662
Query: 667 QAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWI 702
Q +GRV+R + DYG ++ D RFA +K+Q+ WI
Sbjct: 663 QCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWI 696
Score = 180 (68.4 bits), Expect = 4.2e-40, Sum P(3) = 4.2e-40
Identities = 52/180 (28%), Positives = 84/180 (46%)
Query: 126 LGSREQLCIHREVSLLR-GSAQNNACRFLC--------KKGT---NRRCNHHSRVADYMK 173
L SR+ LC+H +S R G + CR + +KG + C+ H ++ D
Sbjct: 108 LTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDL-- 165
Query: 174 NNPHLGDEP--IDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGV 231
PH P + L+ + G CPYF R + +I+ Y+YL+DP + +
Sbjct: 166 -EPHNLVPPGVYSFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSR 224
Query: 232 EW-KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLN 290
E K+SI+IFDEAHN++ +C ++ S DL+ L A + + Q S++ N
Sbjct: 225 ELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQN 284
Score = 88 (36.0 bits), Expect = 4.2e-40, Sum P(3) = 4.2e-40
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 6 IRGIDVEFPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
I + V FP+ Y Q YM + ++L N +LE P+GTGKT+ LL T+A++
Sbjct: 5 IDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Score = 58 (25.5 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 97 ILYTSRTHSQLRQVIQEL-KTSNYRPKMVI-------LG--SREQLCIHREVSLLR-GSA 145
I+Y SRT S++ + + EL K +R + LG SR+ LC+H +S R G
Sbjct: 69 IVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVV 128
Query: 146 QNNACR 151
+ CR
Sbjct: 129 VDEKCR 134
Score = 46 (21.3 bits), Expect = 2.0e-17, Sum P(4) = 2.0e-17
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 498 IEYKQELGNT-IVNIARIVPDGLLIFFPSYYLMDQCIA 534
I+Y +E G + R++P +I + +YL+D IA
Sbjct: 182 IKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIA 219
>UNIPROTKB|Q5AFE9 [details] [associations]
symbol:RAD3 "Putative uncharacterized protein RAD3"
species:237561 "Candida albicans SC5314" [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 CGD:CAL0002854 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
EMBL:AACQ01000024 GO:GO:0003678 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K10844 RefSeq:XP_720409.1 RefSeq:XP_888639.1
ProteinModelPortal:Q5AFE9 STRING:Q5AFE9 GeneID:3638014
GeneID:3704106 KEGG:cal:CaO19.7119 KEGG:cal:CaO19_7119
Uniprot:Q5AFE9
Length = 765
Score = 294 (108.6 bits), Expect = 4.2e-40, Sum P(3) = 4.2e-40
Identities = 70/218 (32%), Positives = 115/218 (52%)
Query: 416 LSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQI 474
L + C + IA++ F R S+I+TSGT+SP+D + + LK ++ + +
Sbjct: 434 LHFTCLDASIAIKPVFDRFS--SVIITSGTISPLDMYPKMLKFETVIQESYAMTLARRSF 491
Query: 475 WAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIA 534
IV G ++S + R+ + G+ ++ A+I PDG+++FFPSY M+ I+
Sbjct: 492 LPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIIS 551
Query: 535 CWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594
W+ S G L +W KHK +VE + LA+E Y ++ GAV +V RG
Sbjct: 552 MWQ--SMGVLDEVW----KHKLILVETPDAQETSLALETYRKAC--SNGRGAVLLSVARG 603
Query: 595 KVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYL 632
KVSEG+DF H GR V++ G+PF ++ + E++
Sbjct: 604 KVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFM 641
Score = 199 (75.1 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 56/156 (35%), Positives = 83/156 (53%)
Query: 547 IWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHA 606
+ + + KHK +VE + LA+E Y ++ GAV +V RGKVSEG+DF H
Sbjct: 558 VLDEVWKHKLILVETPDAQETSLALETYRKAC--SNGRGAVLLSVARGKVSEGIDFDHHY 615
Query: 607 GRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVN 666
GR V++ G+PF T+ ++ LK L+ + KE FLS + A R
Sbjct: 616 GRTVLMIGIPFQ-YTESRI-LKAR---LEFMRDHFQIKEN--DFLSFD------AMRHAA 662
Query: 667 QAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWI 702
Q +GRV+R + DYG ++ D RFA +K+Q+ WI
Sbjct: 663 QCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWI 696
Score = 180 (68.4 bits), Expect = 4.2e-40, Sum P(3) = 4.2e-40
Identities = 52/180 (28%), Positives = 84/180 (46%)
Query: 126 LGSREQLCIHREVSLLR-GSAQNNACRFLC--------KKGT---NRRCNHHSRVADYMK 173
L SR+ LC+H +S R G + CR + +KG + C+ H ++ D
Sbjct: 108 LTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDL-- 165
Query: 174 NNPHLGDEP--IDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGV 231
PH P + L+ + G CPYF R + +I+ Y+YL+DP + +
Sbjct: 166 -EPHNLVPPGVYSFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSR 224
Query: 232 EW-KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLN 290
E K+SI+IFDEAHN++ +C ++ S DL+ L A + + Q S++ N
Sbjct: 225 ELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQN 284
Score = 88 (36.0 bits), Expect = 4.2e-40, Sum P(3) = 4.2e-40
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 6 IRGIDVEFPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
I + V FP+ Y Q YM + ++L N +LE P+GTGKT+ LL T+A++
Sbjct: 5 IDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Score = 58 (25.5 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 97 ILYTSRTHSQLRQVIQEL-KTSNYRPKMVI-------LG--SREQLCIHREVSLLR-GSA 145
I+Y SRT S++ + + EL K +R + LG SR+ LC+H +S R G
Sbjct: 69 IVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVV 128
Query: 146 QNNACR 151
+ CR
Sbjct: 129 VDEKCR 134
Score = 46 (21.3 bits), Expect = 2.0e-17, Sum P(4) = 2.0e-17
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 498 IEYKQELGNT-IVNIARIVPDGLLIFFPSYYLMDQCIA 534
I+Y +E G + R++P +I + +YL+D IA
Sbjct: 182 IKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIA 219
>SGD|S000000973 [details] [associations]
symbol:RAD3 "5' to 3' DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0000439 "core TFIIH complex"
evidence=IDA] [GO:0005675 "holo TFIIH complex" evidence=IDA]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0000990 "core RNA polymerase
binding transcription factor activity" evidence=IC] [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0010525 "regulation of transposition,
RNA-mediated" evidence=IMP] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IDA] [GO:0000019 "regulation of mitotic
recombination" evidence=IMP] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
SGD:S000000973 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0046872
GO:GO:0003684 GO:GO:0051539 GO:GO:0006366 EMBL:BK006939 EMBL:U18922
RefSeq:NP_011098.3 GeneID:856918 KEGG:sce:YER171W GO:GO:0070816
GO:GO:0005675 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000205390 KO:K10844 OMA:KDVDGKC GO:GO:0033683
GO:GO:0043141 GeneTree:ENSGT00550000075092 GO:GO:0000439
GO:GO:0000112 GO:GO:0010525 GO:GO:0000019 OrthoDB:EOG4G1QQH
EMBL:X02368 EMBL:K03293 PIR:A23308 RefSeq:NP_011102.3
ProteinModelPortal:P06839 DIP:DIP-2425N IntAct:P06839
MINT:MINT-617451 STRING:P06839 PaxDb:P06839 PeptideAtlas:P06839
EnsemblFungi:YER171W GeneID:856922 KEGG:sce:YER175C CYGD:YER171w
NextBio:983374 Genevestigator:P06839 GermOnline:YER171W
Uniprot:P06839
Length = 778
Score = 281 (104.0 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 66/214 (30%), Positives = 110/214 (51%)
Query: 420 CFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGI 478
C + IA++ F R S+I+TSGT+SP+D + + L L+ + K I
Sbjct: 439 CLDASIAIKPVFERFS--SVIITSGTISPLDMYPRMLNFKTVLQKSYAMTLAKKSFLPMI 496
Query: 479 VPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKN 538
+ G ++S + R+ + G+ +V A+I PDG+++FFPSY M+ ++ W+
Sbjct: 497 ITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQT 556
Query: 539 TSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSE 598
G L +W KHK +VE + LA+E Y ++ GA+ +V RGKVSE
Sbjct: 557 M--GILDEVW----KHKLILVETPDAQETSLALETYRKAC--SNGRGAILLSVARGKVSE 608
Query: 599 GLDFADHAGRAVVITGMPFATMTDPKVRLKREYL 632
G+DF GR V++ G+PF ++ + E++
Sbjct: 609 GIDFDHQYGRTVLMIGIPFQYTESRILKARLEFM 642
Score = 191 (72.3 bits), Expect = 9.9e-30, Sum P(3) = 9.9e-30
Identities = 53/156 (33%), Positives = 84/156 (53%)
Query: 547 IWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHA 606
I + + KHK +VE + LA+E Y ++ GA+ +V RGKVSEG+DF
Sbjct: 559 ILDEVWKHKLILVETPDAQETSLALETYRKAC--SNGRGAILLSVARGKVSEGIDFDHQY 616
Query: 607 GRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVN 666
GR V++ G+PF T+ ++ LK L+ ++ Y+ + FLS + A R
Sbjct: 617 GRTVLMIGIPFQ-YTESRI-LKAR-LEFMREN----YRIRENDFLSFD------AMRHAA 663
Query: 667 QAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWI 702
Q +GRV+R + DYG ++ D RF+ ++SQ+ WI
Sbjct: 664 QCLGRVLRGKDDYGVMVLADRRFSR--KRSQLPKWI 697
Score = 187 (70.9 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 62/212 (29%), Positives = 102/212 (48%)
Query: 126 LGSREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRRCNH----HSRVADYMKN--NPHL 178
L SR+ LC+H EVS R G+ + CR + R+ + + +Y +N N +
Sbjct: 108 LTSRKNLCLHPEVSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEV 167
Query: 179 GDE-P---IDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEW- 233
D P E L+ CPYF+ R + +I+ Y+YL+DP + + E
Sbjct: 168 EDYLPKGVFSFEKLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVS 227
Query: 234 KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCID--ISSTRRGQSSDETLNP 291
K+SI+IFDEAHN++ +C ++ S DL++ L A N +D IS R+ S + L
Sbjct: 228 KDSIVIFDEAHNIDNVCIESLSLDLTTDALRRATRGA-NALDERISEVRKVDS--QKLQD 284
Query: 292 DNFAILRAL-----LLKLEKRIAEVPINSKEL 318
+ +++ L L E+ E P+ ++L
Sbjct: 285 EYEKLVQGLHSADILTDQEEPFVETPVLPQDL 316
Score = 91 (37.1 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 4 YKIRGIDVEFPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
+ I + V FP+ + Y Q YM + ++L N++LE P+GTGKT+ LL T+A++
Sbjct: 3 FYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Score = 78 (32.5 bits), Expect = 2.5e-28, Sum P(3) = 2.5e-28
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 97 ILYTSRTHSQLRQVIQELKT-SNYRPKMVI-------LG--SREQLCIHREVSLLR-GSA 145
I+Y SRT S++ + + EL+ +YR K + LG SR+ LC+H EVS R G+
Sbjct: 69 IIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPEVSKERKGTV 128
Query: 146 QNNACRFLCKKGTNRR 161
+ CR + R+
Sbjct: 129 VDEKCRRMTNGQAKRK 144
>UNIPROTKB|Q96FC9 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0030496 "midbody" evidence=IDA] [GO:0000922
"spindle pole" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IDA] [GO:0000086 "G2/M transition of mitotic cell cycle"
evidence=TAS] [GO:0000070 "mitotic sister chromatid segregation"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=TAS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006987
"activation of signaling protein activity involved in unfolded
protein response" evidence=TAS] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=TAS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 Reactome:REACT_116125 GO:GO:0000086 GO:GO:0019048
GO:GO:0005654 GO:GO:0006987 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008284 GO:GO:0051539 GO:GO:0003723
GO:GO:0000790 GO:GO:0000070 GO:GO:0004003 GO:GO:0030496
GO:GO:0000922 GO:GO:0000084 GO:GO:0003678 GO:GO:0008094
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
CleanEx:HS_CHL1 OMA:NLGRCVV GO:GO:0007062 HOVERGEN:HBG058884
OrthoDB:EOG4B5P4M EMBL:X99583 EMBL:U33833 EMBL:U75967 EMBL:U75968
EMBL:BC050069 EMBL:BC050522 IPI:IPI00012188 IPI:IPI00332293
IPI:IPI00657836 IPI:IPI00658184 IPI:IPI00942296 PIR:G02071
RefSeq:NP_001244073.1 RefSeq:NP_001244074.1 RefSeq:NP_004390.3
RefSeq:NP_689651.1 UniGene:Hs.443960 ProteinModelPortal:Q96FC9
SMR:Q96FC9 IntAct:Q96FC9 MINT:MINT-1371028 STRING:Q96FC9
PhosphoSite:Q96FC9 DMDM:74731686 PaxDb:Q96FC9 PRIDE:Q96FC9
DNASU:1663 Ensembl:ENST00000228264 Ensembl:ENST00000251758
Ensembl:ENST00000350437 Ensembl:ENST00000407793
Ensembl:ENST00000435753 Ensembl:ENST00000542838
Ensembl:ENST00000545668 GeneID:1663 KEGG:hsa:1663 UCSC:uc001rjr.1
UCSC:uc001rjs.1 UCSC:uc001rjt.1 UCSC:uc001rju.1 CTD:1663
GeneCards:GC12P031226 HGNC:HGNC:2736 MIM:601150 MIM:613398
neXtProt:NX_Q96FC9 Orphanet:280558 PharmGKB:PA27201
InParanoid:Q96FC9 PhylomeDB:Q96FC9 GenomeRNAi:1663 NextBio:6842
ArrayExpress:Q96FC9 Bgee:Q96FC9 CleanEx:HS_DDX11
Genevestigator:Q96FC9 GermOnline:ENSG00000013573 Uniprot:Q96FC9
Length = 970
Score = 242 (90.2 bits), Expect = 1.8e-38, Sum P(4) = 1.8e-38
Identities = 68/249 (27%), Positives = 118/249 (47%)
Query: 409 KGKASR-TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENP- 466
+G S+ TL + NP + + + E ++++ GT+ P+ F Q+L + E
Sbjct: 587 QGSLSQSTLKFLLLNPAVHFAQVVK-ECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVV 645
Query: 467 -----HVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLI 521
HVI I ++ G S L +++ R+ + E+G + N+ +VP G++
Sbjct: 646 EFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVC 705
Query: 522 FFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDT 581
FFPSY + Q A W+ G L R+ KK EP+ + + Y ++
Sbjct: 706 FFPSYEYLRQVHAHWEK---GGLLG---RLAARKKIFQEPKSAHQVEQVLLAYSRCIQAC 759
Query: 582 S-----TSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQA 636
+GA+ +V GK+SEG++F+D+ GR VV+ GMPF + +++ K YLD
Sbjct: 760 GQERGQVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTL 819
Query: 637 QSQGGEYKE 645
+ G +E
Sbjct: 820 SPRPGTPRE 828
Score = 129 (50.5 bits), Expect = 1.8e-38, Sum P(4) = 1.8e-38
Identities = 37/134 (27%), Positives = 62/134 (46%)
Query: 184 DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEA 243
D+E L+ +G+ CPY+ +R +V PY L+ R+ G+ ++ ++I DEA
Sbjct: 336 DMEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEA 395
Query: 244 HNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLK 303
HNL S ++S L S+ ++ R G+ L N L+ +L
Sbjct: 396 HNLIDTITGMHSVEVSGSQLCQAHSQLLQYVE----RYGKR----LKAKNLMYLKQILYL 447
Query: 304 LEKRIAEVPINSKE 317
LEK +A + N K+
Sbjct: 448 LEKFVAVLGGNIKQ 461
Score = 116 (45.9 bits), Expect = 1.8e-38, Sum P(4) = 1.8e-38
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
T K+ I FPF Y Q +M ++ + L+ + ESPTGTGK+L L+C L+W
Sbjct: 5 TQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSW 61
Score = 113 (44.8 bits), Expect = 1.8e-38, Sum P(4) = 1.8e-38
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNAC 150
I Y SRTHSQL Q + E+K S + ++V LGSR+ LC++ +V L GS Q N+ C
Sbjct: 229 IYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSL-GSVQLINDRC 285
Score = 38 (18.4 bits), Expect = 6.2e-17, Sum P(4) = 6.2e-17
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 890 SSQPSSFIPITNKVKHEKPQISDSGSRIIAQ--GSAPSKV 927
S+QP F T + K E PQ+ D RI+ G P V
Sbjct: 668 SNQPLEF---TFQ-KRELPQMMDEVGRILCNLCGVVPGGV 703
>WB|WBGene00021752 [details] [associations]
symbol:Y50D7A.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0000003
EMBL:FO081772 GO:GO:0004003 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 KO:K10844 OMA:KDVDGKC
GeneTree:ENSGT00550000075092 RefSeq:NP_497182.2 UniGene:Cel.30456
ProteinModelPortal:Q9N3L2 STRING:Q9N3L2 PaxDb:Q9N3L2
EnsemblMetazoa:Y50D7A.2 GeneID:175190 KEGG:cel:CELE_Y50D7A.2
UCSC:Y50D7A.2 CTD:175190 WormBase:Y50D7A.2 InParanoid:Q9N3L2
NextBio:887130 Uniprot:Q9N3L2
Length = 606
Score = 340 (124.7 bits), Expect = 6.7e-38, Sum P(2) = 6.7e-38
Identities = 90/295 (30%), Positives = 153/295 (51%)
Query: 415 TLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQ 473
TLS C + IA++ SR + S+I+TSGTLSP++ + + L + P + + + ++
Sbjct: 279 TLS--CHDASIAIRPVMSRFQ--SVIITSGTLSPLEMYPKVLDFD-PSVIASFTMTLARP 333
Query: 474 IWAGIVPV-GPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQC 532
+ +V G + S + R + + GN ++ +A +VPDG+++FF SY M+
Sbjct: 334 CLSPLVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYLYMENV 393
Query: 533 IACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVC 592
I W H I + + K+K +E + A+E Y+ S GAV F+V
Sbjct: 394 IGVWYE-QH-----IIDELMKYKLLFIETNDALETSAALEKYVEACD--SGRGAVLFSVA 445
Query: 593 RGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLS 652
RGKVSEG+DF+ H GR V++ G+P+ +R + EYL + Q G KE
Sbjct: 446 RGKVSEGIDFSHHLGRCVIMLGIPYMYTESRVLRARLEYL----RDQFG-IKEN------ 494
Query: 653 GEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQ 707
D+ A R Q +GR +R + DYG ++F D+RF+ ++ ++ W+Q +++
Sbjct: 495 --DFLTFDAMRHTAQCMGRALRSKTDYGLMVFADKRFSRNDKRGKLPRWMQEYLE 547
Score = 146 (56.5 bits), Expect = 6.7e-38, Sum P(2) = 6.7e-38
Identities = 42/161 (26%), Positives = 76/161 (47%)
Query: 186 EDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEW-KNSILIFDEAH 244
EDL ++GR CPYF R+ IV Y+Y++DP + + ++ + S+++FDEAH
Sbjct: 27 EDLRSLGREKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAH 86
Query: 245 NLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKL 304
N++ +C ++ S +S + E ++ + + R S+ E L + ++ L
Sbjct: 87 NIDNVCIESMSVAISQKNADRALQELQSLEGVVN-RMKSSNSEKLQSEYDKLVEGL---- 141
Query: 305 EKRIAEVPINSKELGF-TKPGPYIYELLADLNITQETAYKL 344
KR N + L P ++E + NI Q + L
Sbjct: 142 -KRTERERANDERLANPVLPDQILHEAVPG-NIRQANHFLL 180
>ASPGD|ASPL0000055138 [details] [associations]
symbol:AN9436 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0010525 "regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0000019 "regulation
of mitotic recombination" evidence=IEA] [GO:0070816
"phosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=IEA] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IEA] [GO:0005675 "holo TFIIH complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] InterPro:IPR001945
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
EMBL:BN001308 GO:GO:0003677 GO:GO:0004003 GO:GO:0006289
TIGRFAMs:TIGR00604 OMA:KDVDGKC EnsemblFungi:CADANIAT00001938
Uniprot:C8VRA9
Length = 791
Score = 283 (104.7 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
Identities = 70/218 (32%), Positives = 114/218 (52%)
Query: 416 LSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQI 474
L + C + IA++ F R S+++TSGTLSP++ + + L ++ + +
Sbjct: 432 LHFTCLDAAIAIKPVFDRFS--SVVITSGTLSPLEMYPKMLGFTTVMQESYSMTLARRSF 489
Query: 475 WAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIA 534
IV G ++SS++ R+ + GN ++ +RI PDG+++FFPSY M+ I+
Sbjct: 490 LPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNIVLEFSRITPDGVVVFFPSYLYMESIIS 549
Query: 535 CWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594
W+ G L +IW +K +VE + LA+E Y + GA+ F V RG
Sbjct: 550 MWQGM--GILDSIWN----YKLILVETPDAQESSLALETYRTAC--CNGRGALLFCVARG 601
Query: 595 KVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYL 632
KVSEG+DF H GRAV+ G+PF ++ + E+L
Sbjct: 602 KVSEGIDFDHHYGRAVLCIGVPFQYTESRILKARLEFL 639
Score = 208 (78.3 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
Identities = 81/311 (26%), Positives = 142/311 (45%)
Query: 6 IRGIDVEFPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
I + V FP+ Y Q YM + ++L + +LE P+GTGKT+ LL +A+++
Sbjct: 5 IDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVTLLSLIVAYQQHYP 64
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELK-TSNYRPKM 123
L ++ L R + R ++L T ++R
Sbjct: 65 EHRKLIYCSRTMS---------------EIEKALAELRELMKFRS--EQLGYTEDFRA-- 105
Query: 124 VILGSREQLCIHREVSLLR-GSAQNNACRFLC--------KKGTN-RRCNHHSRVADYMK 173
+ L SR+ LC+H V + G+ + CR L +KG + C +H + D ++
Sbjct: 106 LGLTSRKNLCLHPSVKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENL-DLLE 164
Query: 174 NNPHLGDEP--IDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGV 231
PH P ++ L+N G CPYF R + +++ Y+YL+DP + +
Sbjct: 165 --PHNLVPPGVFTLDGLLNYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSK 222
Query: 232 EW-KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSD-ETL 289
E+ K+ I++FDEAHN++ +C ++ S D++ L A N ++ + +SSD E L
Sbjct: 223 EFSKDCIVVFDEAHNIDNVCIESLSIDITEDSLRKATRGANN-LE-RKIQDVKSSDAEKL 280
Query: 290 NPDNFAILRAL 300
N + ++ L
Sbjct: 281 NNEYMKLVEGL 291
Score = 184 (69.8 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 54/156 (34%), Positives = 82/156 (52%)
Query: 547 IWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHA 606
I + I +K +VE + LA+E Y + GA+ F V RGKVSEG+DF H
Sbjct: 556 ILDSIWNYKLILVETPDAQESSLALETYRTAC--CNGRGALLFCVARGKVSEGIDFDHHY 613
Query: 607 GRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVN 666
GRAV+ G+PF T+ ++ LK L+ ++ Y+ + FLS + A R
Sbjct: 614 GRAVLCIGVPFQ-YTESRI-LKAR-LEFLREN----YRIRENDFLSFD------AMRHAA 660
Query: 667 QAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWI 702
Q +GRV+R + DYG ++ D RF +++Q+ WI
Sbjct: 661 QCLGRVLRGKDDYGIMVLADRRFQ--KKRNQLPKWI 694
>UNIPROTKB|J9NWT1 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 GO:GO:0006289 TIGRFAMs:TIGR00604
GeneTree:ENSGT00550000075092 EMBL:AAEX03000876
Ensembl:ENSCAFT00000044333 Uniprot:J9NWT1
Length = 707
Score = 268 (99.4 bits), Expect = 6.5e-37, Sum P(2) = 6.5e-37
Identities = 68/228 (29%), Positives = 121/228 (53%)
Query: 412 ASRTLSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVIT 470
A+ L + C + +A++ F R + S+I+TSGTLSP+D + + L + P+ + +
Sbjct: 429 ANPILHFSCMDASLAIKPVFERFQ--SVIITSGTLSPLDIYPKILDFH-PVTMATFTMTL 485
Query: 471 SKQ-IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLM 529
++ + I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M
Sbjct: 486 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 545
Query: 530 DQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589
+ +A W I E I ++K +E + + +A+E Y ++ GA+
Sbjct: 546 ESTVASWYEQG------ILENIQRNKLLFIETQDGAETSVALEKYQEACENGR--GAILL 597
Query: 590 AVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQ 637
+V RGKVSEG+DF H GRAV++ G+P+ ++ + EYL Q Q
Sbjct: 598 SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQ 645
Score = 217 (81.4 bits), Expect = 6.5e-37, Sum P(2) = 6.5e-37
Identities = 73/275 (26%), Positives = 130/275 (47%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
+ G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 5 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYP 64
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYRPK 122
T +P I + +LR+++ E + P
Sbjct: 65 LEVTKLIYCSRT-----------------VPEI---EKVIEELRKLLNFYEKQEGEKLPF 104
Query: 123 M-VILGSREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRRCNHHSRVAD---YMKNNPH 177
+ + L SR+ LCIH EV LR G + C L + S + Y + + H
Sbjct: 105 LGLALSSRKNLCIHPEVMPLRFGKDVDGKCHSLTASYVRAQYQQDSSLPHCRFYEEFDVH 164
Query: 178 LGDEPI-----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVE 232
P+ +++DL +G+ G CPYF+ R ++V Y+YL+DP + + E
Sbjct: 165 GRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKE 224
Query: 233 W-KNSILIFDEAHNLEGICADAASFDLSSGLLTAC 266
+ ++++FDEAHN++ +C D+ S +++ L C
Sbjct: 225 LARKAVVVFDEAHNIDNVCIDSMSVNITRRTLDRC 259
>POMBASE|SPAC1D4.12 [details] [associations]
symbol:rad15 "transcription factor TFIIH complex subunit
Rad15" species:4896 "Schizosaccharomyces pombe" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IGI]
[GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IGI]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005675 "holo TFIIH complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISO]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
PomBase:SPAC1D4.12 INTERPRO:IPR013020 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0006367 GO:GO:0000991 GO:GO:0005675
eggNOG:COG1199 TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 KO:K10844
OMA:KDVDGKC GO:GO:0043141 GO:GO:0000717 GO:GO:0000439 GO:GO:0000112
EMBL:X64583 EMBL:X60499 PIR:S22660 RefSeq:NP_593025.1
ProteinModelPortal:P26659 IntAct:P26659 STRING:P26659
EnsemblFungi:SPAC1D4.12.1 GeneID:2542203 KEGG:spo:SPAC1D4.12
OrthoDB:EOG4G1QQH NextBio:20803273 Uniprot:P26659
Length = 772
Score = 287 (106.1 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 71/218 (32%), Positives = 115/218 (52%)
Query: 416 LSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQI 474
L + C + IA++ F R S+I+TSGTLSP+D + + L+ N ++ +
Sbjct: 432 LRFSCLDASIAIKPVFERFR--SVIITSGTLSPLDMYPKMLQFNTVMQESYGMSLARNCF 489
Query: 475 WAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIA 534
+V G ++S + R+ + GN +V ++I PDGL+ FFPSY ++ ++
Sbjct: 490 LPMVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVAFFPSYLYLESIVS 549
Query: 535 CWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594
W+ S G L +W K+K +VE LA+E Y A ++ GAV +V RG
Sbjct: 550 SWQ--SMGILDEVW----KYKLILVETPDPHETTLALETYRAAC--SNGRGAVLLSVARG 601
Query: 595 KVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYL 632
KVSEG+DF H GRAV++ G+P+ ++ + E+L
Sbjct: 602 KVSEGVDFDHHYGRAVIMFGIPYQYTESRVLKARLEFL 639
Score = 196 (74.1 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
Identities = 50/160 (31%), Positives = 85/160 (53%)
Query: 547 IWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHA 606
I + + K+K +VE LA+E Y A ++ GAV +V RGKVSEG+DF H
Sbjct: 556 ILDEVWKYKLILVETPDPHETTLALETYRAAC--SNGRGAVLLSVARGKVSEGVDFDHHY 613
Query: 607 GRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVN 666
GRAV++ G+P+ ++ + E+L Y+ + FL+ + A R
Sbjct: 614 GRAVIMFGIPYQYTESRVLKARLEFLR-------DTYQIREADFLTFD------AMRHAA 660
Query: 667 QAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
Q +GRV+R + D+G ++ D+R+ +++++ WIQ +I
Sbjct: 661 QCLGRVLRGKDDHGIMVLADKRYGRSDKRTKLPKWIQQYI 700
Score = 191 (72.3 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 78/313 (24%), Positives = 131/313 (41%)
Query: 4 YKIRGIDVEFPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKS 62
+ I + + FP+ Y Q YM + SL ALLE P+GTGKT+ LL +++++
Sbjct: 3 FYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQQH 62
Query: 63 LGSFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKTSNYRPK 122
L +L ++ RT SQL Y
Sbjct: 63 YPEHRKLIYCSRTMSEIDKALA--------ELKRLM-AYRT-SQL----------GYEEP 102
Query: 123 MVILG--SREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRR---------CNHHSRVAD 170
+ LG SR+ LC+H V + G+ + CR L + C H + D
Sbjct: 103 FLGLGLTSRKNLCLHPSVRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLED 162
Query: 171 YMKNNPH--LGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKG 228
PH + + ++D+ G CPYF R + +++ Y+YL+DP +
Sbjct: 163 L---EPHSLISNGVWTLDDITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAER 219
Query: 229 LGVEW-KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDE 287
+ E K+ I++FDEAHN++ +C ++ S DL+ L S++ ++ QS +
Sbjct: 220 VSRELSKDCIVVFDEAHNIDNVCIESLSIDLTESSLRKA-SKSILSLEQKVNEVKQSDSK 278
Query: 288 TLNPDNFAILRAL 300
L + ++R L
Sbjct: 279 KLQDEYQKLVRGL 291
Score = 44 (20.5 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 684 FCDERFAHPSRKSQISLWIQPH-IQCYSKFGDVVYTLTRFF 723
FC ER R QISL H +Q F +V T R F
Sbjct: 373 FCAERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGF 413
Score = 43 (20.2 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 483 PSGYLLNSSYRNRDSIEYKQELGNT-IVNIARIVPDGLLIFFPSYYLMDQCIA 534
P + N + D EY ++ + R++P +I + +YL+D IA
Sbjct: 165 PHSLISNGVWTLDDITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIA 217
>FB|FBgn0261850 [details] [associations]
symbol:Xpd "Xeroderma pigmentosum D" species:7227 "Drosophila
melanogaster" [GO:0006289 "nucleotide-excision repair"
evidence=ISS;IDA] [GO:0001113 "transcriptional open complex
formation at RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=ISS;IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=ISS] [GO:0009411 "response to UV" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0000439 "core TFIIH complex"
evidence=ISS;IDA] [GO:0001111 "promoter clearance from RNA
polymerase II promoter" evidence=ISS] [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0007088
"regulation of mitosis" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 EMBL:AE013599
GO:GO:0005524 GO:GO:0005737 GO:GO:0007088 GO:GO:0009411
GO:GO:0003677 GO:GO:0006367 GO:GO:0006289 GO:GO:0051983
GO:GO:0005675 GO:GO:0005703 GO:GO:0010972 GO:GO:0005705
TIGRFAMs:TIGR00604 KO:K10844 OMA:KDVDGKC GO:GO:0043141
GeneTree:ENSGT00550000075092 GO:GO:0000439 FlyBase:FBgn0261850
RefSeq:NP_726036.2 UniGene:Dm.718 ProteinModelPortal:Q7KVP9
STRING:Q7KVP9 PRIDE:Q7KVP9 EnsemblMetazoa:FBtr0071576 GeneID:37414
KEGG:dme:Dmel_CG9433 UCSC:CG9433-RA CTD:37414 InParanoid:Q7KVP9
OrthoDB:EOG4FTTFK PhylomeDB:Q7KVP9 GenomeRNAi:37414 NextBio:803510
ArrayExpress:Q7KVP9 Bgee:Q7KVP9 Uniprot:Q7KVP9
Length = 769
Score = 263 (97.6 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 69/230 (30%), Positives = 123/230 (53%)
Query: 416 LSWWCFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQ- 473
L + C + IAM FSR + ++++TSGTLSPMD + + L + P+ + + + ++
Sbjct: 433 LHFSCLDSSIAMAPVFSRFQ--TVVITSGTLSPMDMYPKILDFD-PVVMSSFTMTLARPC 489
Query: 474 IWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCI 533
+ IV G ++S + R+ + G +V +A+ VPDG++ FF SY ++ +
Sbjct: 490 LLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVV 549
Query: 534 ACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCR 593
A W + I + + ++K +E + ++ A+ +Y+ K D GAV AV R
Sbjct: 550 ASWYDQG------IVDTLLRYKLLFIETQDNAETSYALMNYV-KACDCGR-GAVLLAVAR 601
Query: 594 GKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEY 643
GKVSEG+DF H GRAV++ G+P+ ++ + +YL Q Q + ++
Sbjct: 602 GKVSEGVDFDHHYGRAVLMFGIPYVYTQSRILKARLDYLRDQFQIRENDF 651
Score = 212 (79.7 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 79/266 (29%), Positives = 118/266 (44%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
+ G+ V FP+E Y Q YM ++ +SL K + LLE P+GTGKT LL +A+ +
Sbjct: 5 VDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM--VE 62
Query: 65 SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKTSNYRPKM- 123
T+ +P I L V E N P
Sbjct: 63 HPETVRKLIYCSRT---------------VPEIEKVIAELQNL-MVYYERHCPNPPPFTG 106
Query: 124 VILGSREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRR--CNHHSRVADYMKNNPHLGD 180
++L SR+ +CIH EVS R G A + C L R + + + Y + G
Sbjct: 107 LVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGK 166
Query: 181 E---PI---DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEW- 233
E P+ I+DL GR+ CPYF+ R IV Y+YL+DP + + E
Sbjct: 167 ESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMS 226
Query: 234 KNSILIFDEAHNLEGICADAASFDLS 259
+ S ++FDEAHN++ +C D+ S ++
Sbjct: 227 RESCVVFDEAHNIDNVCIDSMSVKIN 252
Score = 211 (79.3 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 54/160 (33%), Positives = 88/160 (55%)
Query: 547 IWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHA 606
I + + ++K +E + ++ A+ +Y+ K D GAV AV RGKVSEG+DF H
Sbjct: 557 IVDTLLRYKLLFIETQDNAETSYALMNYV-KACDCGR-GAVLLAVARGKVSEGVDFDHHY 614
Query: 607 GRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVN 666
GRAV++ G+P+ ++ + +YL Q Q + ++ L+F A R
Sbjct: 615 GRAVLMFGIPYVYTQSRILKARLDYLRDQFQIRENDF----LTF---------DAMRHAA 661
Query: 667 QAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
Q VGR +R + DYG +IF D+RF+ ++S++ WIQ H+
Sbjct: 662 QCVGRALRGKTDYGIMIFADKRFSRHDKRSRLPKWIQEHL 701
Score = 44 (20.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 517 DGLLIFFPSYYL 528
DGLL++FP Y+
Sbjct: 6 DGLLVYFPYEYI 17
>DICTYBASE|DDB_G0267414 [details] [associations]
symbol:repD "transcription factor IIH component"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IEA;IEP] [GO:0043141 "ATP-dependent
5'-3' DNA helicase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=IEA;ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000443 "SSL2-core TFIIH complex portion
of holo TFIIH complex" evidence=ISS] [GO:0000442 "SSL2-core TFIIH
complex portion of NEF3 complex" evidence=ISS] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 dictyBase:DDB_G0267414
INTERPRO:IPR013020 GO:GO:0005524 GenomeReviews:CM000150_GR
GO:GO:0006355 GO:GO:0000287 GO:GO:0003677 EMBL:AAFI02000003
GO:GO:0051539 GO:GO:0006366 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K10844 OMA:KDVDGKC EMBL:U77066
RefSeq:XP_647302.1 ProteinModelPortal:Q55G81 STRING:Q55G81
EnsemblProtists:DDB0191272 GeneID:8616111 KEGG:ddi:DDB_G0267414
ProtClustDB:CLSZ2431526 GO:GO:0000443 GO:GO:0000442 GO:GO:0043141
Uniprot:Q55G81
Length = 776
Score = 251 (93.4 bits), Expect = 4.7e-34, Sum P(2) = 4.7e-34
Identities = 74/228 (32%), Positives = 119/228 (52%)
Query: 420 CFNPGIAMQE-FSRLEVGSIILTSGTLSPMDSFAQELKLNF-PLRVENPHVITSKQ-IWA 476
C + I M+ F + S+++TSGTLSP+D + + LNF P VE + ++ I
Sbjct: 430 CLDASIGMKPIFDKYR--SVVITSGTLSPLDIYTK--MLNFRPTVVERLTMSLNRNCICP 485
Query: 477 GIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACW 536
I+ G +++ + R + G +V ++ IVPDG++ FF SY M+Q ++ W
Sbjct: 486 CILTRGSDQISISTKFDVRSDTAVVRNYGALLVEVSAIVPDGIICFFTSYSYMEQIVSVW 545
Query: 537 KNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKV 596
N + I +K VE + LA+++Y K D S GAV +V RGKV
Sbjct: 546 ------NEMGLLNNILTNKLIFVETSDPAESALALQNYK-KACD-SGRGAVLLSVARGKV 597
Query: 597 SEGLDFADHAGRAVVITGMPFATMTDPKV-RLKREYLDLQAQSQGGEY 643
SEG+DF + GR V++ G+P+ T+ KV R + E+L + Q + E+
Sbjct: 598 SEGIDFDNQYGRCVILYGIPYIN-TESKVLRARLEFLRDRYQIRENEF 644
Score = 209 (78.6 bits), Expect = 4.7e-34, Sum P(2) = 4.7e-34
Identities = 80/286 (27%), Positives = 125/286 (43%)
Query: 4 YKIRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKS 62
+ I + V FP+ Y Q YM + +SL N +LE P+GTGKT+ LL +++
Sbjct: 3 FYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQVK 62
Query: 63 LGSFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYR 120
S + +P I + + R+V+Q +
Sbjct: 63 NPSIKLIYCSRT-------------------VPEI---EQATEEARRVLQYRNSEMGEES 100
Query: 121 PKMVILG--SREQLCIHREVSLLR-GSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPH 177
PK + + SR LCI VS R G + CR L NR + S + +N
Sbjct: 101 PKTLCMSMSSRRNLCIQPRVSEERDGKVVDALCRELTSSW-NRE-SPTSEKCKFFENFES 158
Query: 178 LGDEPI-----DIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVE 232
G E + +EDL G CPYF++R + +IV Y YL+DP +
Sbjct: 159 NGKEILLEGVYSLEDLKEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSS 218
Query: 233 W-KNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDIS 277
+ NSI++FDEAHN++ +C +A S ++ + LL + +KN I+
Sbjct: 219 FPSNSIVVFDEAHNIDNVCINALSINIDNKLLD---TSSKNIAKIN 261
Score = 204 (76.9 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 71/222 (31%), Positives = 114/222 (51%)
Query: 518 GLLIFFPSYYLMDQCIACWKNTSH-GNLTTIWER------ICKHKKPVVEPRQSSLFPLA 570
G L+ S + D I + + S+ + ++W I +K VE + LA
Sbjct: 514 GALLVEVSAIVPDGIICFFTSYSYMEQIVSVWNEMGLLNNILTNKLIFVETSDPAESALA 573
Query: 571 IEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKV-RLKR 629
+++Y K D S GAV +V RGKVSEG+DF + GR V++ G+P+ T+ KV R +
Sbjct: 574 LQNYK-KACD-SGRGAVLLSVARGKVSEGIDFDNQYGRCVILYGIPYIN-TESKVLRARL 630
Query: 630 EYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERF 689
E+L + Q + E+ L+F A R +Q VGRVIR + DYG +IF D+R+
Sbjct: 631 EFLRDRYQIRENEF----LTF---------DAMRTASQCVGRVIRGKSDYGIMIFADKRY 677
Query: 690 AHPSRKSQISLWI----QP-HIQCYSKFGDVVYTLTR-FFRE 725
+++++ WI QP H+ + D+ +L++ F RE
Sbjct: 678 NRLDKRNKLPQWILQFCQPQHLNLST---DMAISLSKTFLRE 716
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 724 REERICGSTNLKLIKTEVSGDVRELKPVDLL 754
R R C S L++T DV + + L+
Sbjct: 363 RTLRFCSSRLSSLLRTLRINDVNQFSGISLI 393
>SGD|S000005929 [details] [associations]
symbol:CHL1 "Probable DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007059 "chromosome segregation"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=ISS;IMP]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0007064
"mitotic sister chromatid cohesion" evidence=IGI;IMP;IPI]
[GO:0032508 "DNA duplex unwinding" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0036297 "interstrand cross-link repair" evidence=IGI]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IGI;IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0007535 "donor selection"
evidence=IGI;IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 SGD:S000005929
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006270 EMBL:Z71255 EMBL:BK006949 GO:GO:0004003 EMBL:Z48483
EMBL:U33335 GO:GO:0003678 GO:GO:0007064 GO:GO:0045910
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 OMA:NLGRCVV OrthoDB:EOG408RH6 EMBL:X56584
PIR:S12499 RefSeq:NP_015317.1 ProteinModelPortal:P22516 SMR:P22516
DIP:DIP-4044N IntAct:P22516 MINT:MINT-526050 STRING:P22516
PaxDb:P22516 PeptideAtlas:P22516 EnsemblFungi:YPL008W GeneID:856099
KEGG:sce:YPL008W CYGD:YPL008w GeneTree:ENSGT00530000063199
NextBio:981143 Genevestigator:P22516 GermOnline:YPL008W
GO:GO:0007535 GO:GO:0036297 Uniprot:P22516
Length = 861
Score = 281 (104.0 bits), Expect = 6.9e-29, Sum P(2) = 6.9e-29
Identities = 123/478 (25%), Positives = 204/478 (42%)
Query: 97 ILYTSRTHSQLRQVIQELKT----SNYRPKM-------VILGSREQLCIHREVSLLRG-S 144
I Y SRT+SQL Q +L+ S++R K+ + L S++QLCI+ +V +
Sbjct: 233 IYYASRTYSQLGQFTSQLRLPSFPSSFRDKVPDEKVKYLPLASKKQLCINPKVMKWKTLE 292
Query: 145 AQNNACRFL--CKKGT--NRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPY 200
A N+AC L K+G + N D + + E DIEDLV +G++ G CPY
Sbjct: 293 AINDACADLRHSKEGCIFYQNTNEWRHCPDTLALRDMIFSEIQDIEDLVPLGKSLGICPY 352
Query: 201 FMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSS 260
+ +RE ++V PY YL+ R L + +NSI+I DEAHNL S +S
Sbjct: 353 YASREALPIAEVVTLPYQYLLSESTRSSLQINLENSIVIIDEAHNLIETINSIYSSQISL 412
Query: 261 GLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRAL--LLKLEKRIA-EVPINSKE 317
L C + +R + L N ++ + ++K K+I E+ N
Sbjct: 413 EDLKNCHKGIVTYFNKFKSRLNPGNRVNLLKLNSLLMTLIQFIVKNFKKIGQEIDPNDMF 472
Query: 318 LGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNI 377
G I++LL + +++ AYK ID A L +E+ +N+ +S+S+
Sbjct: 473 TGSNIDTLNIHKLLRYIKVSK-IAYK-IDTYNQA--LKEEESSKNENPIKETHKKSVSS- 527
Query: 378 LKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGS 437
++F+ + Y ++ + K + ++ + P + +
Sbjct: 528 QPLLFK---VSQFLYCLTNL----TSEGQFFFEK-NYSIKYMLLEPSKPFESILN-QAKC 578
Query: 438 IILTSGTLSPMDSFAQELKLNFPLR----VENPHVITSKQIWAGIVPVGPSGYLLNSSYR 493
++L GT+ PM F L P + HVI + + I P L ++
Sbjct: 579 VVLAGGTMEPMSEFLSNLLPEVPSEDITTLSCNHVIPKENLQTYITNQ-PE---LEFTFE 634
Query: 494 NRDSIEY-KQELGNTIVNIARIVPD--GLLIFFPSYYLMDQCIACWK-NTSHGNLTTI 547
R S L V++++ VP G++ FFPSY + I CWK N L +
Sbjct: 635 KRMSPSLVNNHLFQFFVDLSKAVPKKGGIVAFFPSYQYLAHVIQCWKQNDRFATLNNV 692
Score = 274 (101.5 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
Identities = 81/294 (27%), Positives = 134/294 (45%)
Query: 438 IILTSGTLSPMDSFAQELKLNFPLR----VENPHVITSKQIWAGIVPVGPSGYLLNSSYR 493
++L GT+ PM F L P + HVI + + I P L ++
Sbjct: 579 VVLAGGTMEPMSEFLSNLLPEVPSEDITTLSCNHVIPKENLQTYITNQ-PE---LEFTFE 634
Query: 494 NRDSIEY-KQELGNTIVNIARIVPD--GLLIFFPSYYLMDQCIACWK-NTSHGNLTTIWE 549
R S L V++++ VP G++ FFPSY + I CWK N L +
Sbjct: 635 KRMSPSLVNNHLFQFFVDLSKAVPKKGGIVAFFPSYQYLAHVIQCWKQNDRFATLNNV-- 692
Query: 550 RICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRA 609
+K E + D +A+ + G++ A+ GK+SEG++F D RA
Sbjct: 693 -----RKIFYEAKDGDDILSGYSDSVAEGR-----GSLLLAIVGGKLSEGINFQDDLCRA 742
Query: 610 VVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAV 669
VV+ G+PF + ++ +KR++L + GG +E + +++ +AVNQ+V
Sbjct: 743 VVMVGLPFPNIFSGELIVKRKHLAAKIMKSGGTEEEASRAT---KEFMENICMKAVNQSV 799
Query: 670 GRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFF 723
GR IRH +DY I D R+ P+ + ++S W+Q I V+ + +FF
Sbjct: 800 GRAIRHANDYANIYLLDVRYNRPNFRKKLSRWVQDSINSEHTTHQVISSTRKFF 853
Score = 130 (50.8 bits), Expect = 6.9e-29, Sum P(2) = 6.9e-29
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 14 PFEAYDCQLVYMEKVIQSL-QNKCNALLESPTGTGKTLCLLCATLAW 59
P++ YD Q+ ME V + L + K A+LESPTGTGKTL L+CAT+ W
Sbjct: 13 PYKPYDIQVQLMETVYRVLSEGKKIAILESPTGTGKTLSLICATMTW 59
>GENEDB_PFALCIPARUM|MAL13P1.134 [details] [associations]
symbol:MAL13P1.134 "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0016020 "membrane"
evidence=ISS] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 GO:GO:0005524 GO:GO:0016020 GO:GO:0003677
GO:GO:0004003 EMBL:AL844509 KO:K11273 PANTHER:PTHR11472:SF5
RefSeq:XP_001349985.1 ProteinModelPortal:Q8IE72
EnsemblProtists:MAL13P1.134:mRNA GeneID:813685 KEGG:pfa:MAL13P1.134
EuPathDB:PlasmoDB:PF3D7_1324500 HOGENOM:HOG000281821
ProtClustDB:CLSZ2500734 Uniprot:Q8IE72
Length = 1099
Score = 219 (82.2 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 81/297 (27%), Positives = 138/297 (46%)
Query: 434 EVGSIILTSGTLSPMDSFAQELKLNF---PLRVENPHVITSKQ-IWAGIVPVGP-SGYLL 488
+ ++IL GTL PM+ F L LN+ +++ + I KQ I+A I S +
Sbjct: 738 DCSNVILIGGTLYPMEEFLL-LFLNYNKNKIKLFSSDYIFKKQNIFARIFSTNLISSDFI 796
Query: 489 NSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIW 548
+++Y+NR ++ L I I + G +IFFPSY ++ + N + I+
Sbjct: 797 DNTYKNRLKKDHLLNLAIYIYMITFNILYGNIIFFPSYNFLND----FYNFLNKEGEYIF 852
Query: 549 ERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTST--------SGAVFFAVCRGKVSEGL 600
RI K K E + +++YM +++ +G + F V GK+SEG+
Sbjct: 853 NRIKKKKFVFFEKKNDDTI---VKNYMNNIENIKNIDPNLRIQNGCILFCVMNGKLSEGI 909
Query: 601 DFADHAGRAVVITGMPFA---TMTDPKV-RLK--REYLDLQAQSQGGEYKETKLSFLSG- 653
+F D R VV+ G+PF ++ D + RLK REY + + TK+
Sbjct: 910 NFYDDLCRNVVVVGIPFIKHDSVVDKNLLRLKYYREYTK-DIMNTHDKNDNTKILIYDDV 968
Query: 654 ----EDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
E + + A + +NQ +GR +RH +D+ + F D RF+ + +I+ HI
Sbjct: 969 HKMCESYETKYAMKIINQCIGRSLRHVNDFSSFFFLDYRFSKKEIFQNLPSFIKTHI 1025
Score = 124 (48.7 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 168 VADYMKNNPHLGDEPIDIEDLVNIGRT--FGPCPYFMTRELQKTVDIVFAPYNYLIDPWF 225
+ +Y+ + + +DIED+ +I + CPY++++E K DI+ PY +++
Sbjct: 333 IDNYILITKLINNRNVDIEDIKDICKNEHIEICPYYLSKENIKNADIILLPYICILNENI 392
Query: 226 RKGLGVEWKNSILIFDEAHNL 246
R L + KN+I+IFDE+ N+
Sbjct: 393 RNNLKINIKNNIVIFDESQNI 413
Score = 83 (34.3 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKT------SNYRPKMVILGSREQLCIHREVSLLRGSAQ 146
K I SRT SQL Q ELK ++ M+I+GSR+ LCI+ + L+
Sbjct: 220 KKKQIFICSRTQSQLNQYFHELKKIEKKMGEDFSINMIIIGSRKHLCINE--AFLKKYKN 277
Query: 147 NNACRFLCKKGTNRRCNH 164
N CK N +C +
Sbjct: 278 INELNDCCK---NSKCKY 292
Score = 49 (22.3 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 39 LLESPTGTGKTLCLLCATLAW 59
+ E TG+GK+L LL + + W
Sbjct: 89 ICEMKTGSGKSLTLLTSLIYW 109
Score = 45 (20.9 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 13 FPFEAYDCQLVYMEKVIQSL 32
FPFE Y QL +M Q L
Sbjct: 13 FPFEPYKIQLNFMRLFYQVL 32
>UNIPROTKB|Q8IE72 [details] [associations]
symbol:MAL13P1.134 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016020 "membrane"
evidence=ISS] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 GO:GO:0005524 GO:GO:0016020 GO:GO:0003677
GO:GO:0004003 EMBL:AL844509 KO:K11273 PANTHER:PTHR11472:SF5
RefSeq:XP_001349985.1 ProteinModelPortal:Q8IE72
EnsemblProtists:MAL13P1.134:mRNA GeneID:813685 KEGG:pfa:MAL13P1.134
EuPathDB:PlasmoDB:PF3D7_1324500 HOGENOM:HOG000281821
ProtClustDB:CLSZ2500734 Uniprot:Q8IE72
Length = 1099
Score = 219 (82.2 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 81/297 (27%), Positives = 138/297 (46%)
Query: 434 EVGSIILTSGTLSPMDSFAQELKLNF---PLRVENPHVITSKQ-IWAGIVPVGP-SGYLL 488
+ ++IL GTL PM+ F L LN+ +++ + I KQ I+A I S +
Sbjct: 738 DCSNVILIGGTLYPMEEFLL-LFLNYNKNKIKLFSSDYIFKKQNIFARIFSTNLISSDFI 796
Query: 489 NSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIW 548
+++Y+NR ++ L I I + G +IFFPSY ++ + N + I+
Sbjct: 797 DNTYKNRLKKDHLLNLAIYIYMITFNILYGNIIFFPSYNFLND----FYNFLNKEGEYIF 852
Query: 549 ERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTST--------SGAVFFAVCRGKVSEGL 600
RI K K E + +++YM +++ +G + F V GK+SEG+
Sbjct: 853 NRIKKKKFVFFEKKNDDTI---VKNYMNNIENIKNIDPNLRIQNGCILFCVMNGKLSEGI 909
Query: 601 DFADHAGRAVVITGMPFA---TMTDPKV-RLK--REYLDLQAQSQGGEYKETKLSFLSG- 653
+F D R VV+ G+PF ++ D + RLK REY + + TK+
Sbjct: 910 NFYDDLCRNVVVVGIPFIKHDSVVDKNLLRLKYYREYTK-DIMNTHDKNDNTKILIYDDV 968
Query: 654 ----EDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHI 706
E + + A + +NQ +GR +RH +D+ + F D RF+ + +I+ HI
Sbjct: 969 HKMCESYETKYAMKIINQCIGRSLRHVNDFSSFFFLDYRFSKKEIFQNLPSFIKTHI 1025
Score = 124 (48.7 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 168 VADYMKNNPHLGDEPIDIEDLVNIGRT--FGPCPYFMTRELQKTVDIVFAPYNYLIDPWF 225
+ +Y+ + + +DIED+ +I + CPY++++E K DI+ PY +++
Sbjct: 333 IDNYILITKLINNRNVDIEDIKDICKNEHIEICPYYLSKENIKNADIILLPYICILNENI 392
Query: 226 RKGLGVEWKNSILIFDEAHNL 246
R L + KN+I+IFDE+ N+
Sbjct: 393 RNNLKINIKNNIVIFDESQNI 413
Score = 83 (34.3 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKT------SNYRPKMVILGSREQLCIHREVSLLRGSAQ 146
K I SRT SQL Q ELK ++ M+I+GSR+ LCI+ + L+
Sbjct: 220 KKKQIFICSRTQSQLNQYFHELKKIEKKMGEDFSINMIIIGSRKHLCINE--AFLKKYKN 277
Query: 147 NNACRFLCKKGTNRRCNH 164
N CK N +C +
Sbjct: 278 INELNDCCK---NSKCKY 292
Score = 49 (22.3 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 39 LLESPTGTGKTLCLLCATLAW 59
+ E TG+GK+L LL + + W
Sbjct: 89 ICEMKTGSGKSLTLLTSLIYW 109
Score = 45 (20.9 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 13 FPFEAYDCQLVYMEKVIQSL 32
FPFE Y QL +M Q L
Sbjct: 13 FPFEPYKIQLNFMRLFYQVL 32
>UNIPROTKB|F1N0S0 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9913 "Bos taurus" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR014013
PROSITE:PS51193 GeneTree:ENSGT00530000063199 GO:GO:0016817
IPI:IPI00840795 EMBL:DAAA02036220 EMBL:DAAA02036222
EMBL:DAAA02036221 EMBL:DAAA02036223 Ensembl:ENSBTAT00000045108
Uniprot:F1N0S0
Length = 1250
Score = 271 (100.5 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 58/132 (43%), Positives = 74/132 (56%)
Query: 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
MP ++G+ V+FPF+ Y CQ YM KV++ LQ K N +LESPTGTGKTLCLLC+TLAWR
Sbjct: 1 MPKITLKGVTVDFPFQPYKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWR 60
Query: 61 KSLG-----------SFSTLXXXXXXXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQ 109
+ L + L +P I+Y SRTHSQL Q
Sbjct: 61 EHLRDAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQ 120
Query: 110 VIQELKTSNYRP 121
VI EL+ ++YRP
Sbjct: 121 VISELRNTSYRP 132
Score = 60 (26.2 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 961 SAFLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLFAG-PERLPLLRRFKDY 1019
SA+L V+ L A Y + + V+ +A L PE LPLL+RF +
Sbjct: 1047 SAYLADVRRTLGAAGYSQLLT-ALTTYKQDDDFEKVVAVVAALTTEKPEDLPLLQRFGMF 1105
Query: 1020 VPAKYHPLYEQYLMNNS 1036
V + + Q ++ S
Sbjct: 1106 VRPHHKQRFRQMCVDLS 1122
Score = 57 (25.1 bits), Expect = 3.0e-19, Sum P(3) = 3.0e-19
Identities = 16/85 (18%), Positives = 35/85 (41%)
Query: 947 HSSAPPCGGEETKGSAFLIQVQEKLSATEYKEFVGFXXXXXXXXXXISHVLQSIAKLFA- 1005
H P + + F++ V++ LS + F + ++ ++ LFA
Sbjct: 869 HPEVPAASTDTGRAKLFMVAVKQALSQASFDTFTQ-ALRDYKSSDDLEALVARLSPLFAE 927
Query: 1006 GPERLPLLRRFKDYVPAKYHPLYEQ 1030
P++ LL+ F +V + +E+
Sbjct: 928 DPKKHSLLQGFYQFVRPHHKQQFEE 952
Score = 44 (20.5 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 418 WWCFNPGIAM 427
WW F PG+ +
Sbjct: 453 WWSFRPGLCL 462
>UNIPROTKB|H0YFY8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=IEA] InterPro:IPR006555
InterPro:IPR027076 Pfam:PF13307 SMART:SM00491 GO:GO:0005524
GO:GO:0003676 GO:GO:0008026 PANTHER:PTHR11472:SF5 HGNC:HGNC:2736
EMBL:AC008013 Ensembl:ENST00000539702 Uniprot:H0YFY8
Length = 172
Score = 230 (86.0 bits), Expect = 6.5e-18, P = 6.5e-18
Identities = 45/143 (31%), Positives = 81/143 (56%)
Query: 584 SGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEY 643
+GA+ +V GK+SEG++F+D+ GR VV+ GMPF + +++ K YLD G+
Sbjct: 33 TGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA 92
Query: 644 KETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQ 703
G+ +AVNQ++GR IRH+ D+ +++ D+R+A P +++ WI+
Sbjct: 93 PP-------GKALVENLCMKAVNQSIGRAIRHQKDFASVVLLDQRYARPPVLAKLPAWIR 145
Query: 704 PHIQCYSKFGDVVYTLTRFFREE 726
++ + FG + + +F RE+
Sbjct: 146 ARVEVKATFGPAIAAVQKFHREK 168
>UNIPROTKB|K7EIT8 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 INTERPRO:IPR013020 TIGRFAMs:TIGR00604
EMBL:L47234 HGNC:HGNC:3434 Ensembl:ENST00000586131 Uniprot:K7EIT8
Length = 292
Score = 207 (77.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 68/255 (26%), Positives = 121/255 (47%)
Query: 25 MEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLXXXXXXXXXXXXXXX 84
M ++ ++L K + +LE P+GTGKT+ LL +A++++ T
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRT-------- 52
Query: 85 XXXXXXXXKLPTILYTSRTHSQLRQVIQ--ELKTSNYRPKM-VILGSREQLCIHREVSLL 141
+P I + +LR+++ E + P + + L SR+ LCIH EV+ L
Sbjct: 53 ---------VPEI---EKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPL 100
Query: 142 R-GSAQNNACRFLCKKGTNRRCNHHSRVAD---YMKNNPHLGDEPI-----DIEDLVNIG 192
R G + C L + H + + Y + + H + P+ +++DL +G
Sbjct: 101 RFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALG 160
Query: 193 RTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEW-KNSILIFDEAHNLEGICA 251
R G CPYF+ R ++V Y+YL+DP + E + ++++FDEAHN++ +C
Sbjct: 161 RRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCI 220
Query: 252 DAASFDLSSGLLTAC 266
D+ S +L+ L C
Sbjct: 221 DSMSVNLTRRTLDRC 235
>UNIPROTKB|J3QKX0 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR006555 Pfam:PF13307
SMART:SM00491 GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
Ensembl:ENST00000584322 Uniprot:J3QKX0
Length = 180
Score = 186 (70.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 43/123 (34%), Positives = 68/123 (55%)
Query: 503 ELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR 562
E+G ++++ + V G+L F PSY L+++ W +T +W + K +VEP+
Sbjct: 3 EVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTG------LWHNLELVKTVIVEPQ 56
Query: 563 --QSSLFPLAIEDYMAKLK-DTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFAT 619
+ + F ++ Y +K GA+ AVCRGKVSEGLDF+D RAV+ G+PF
Sbjct: 57 GGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPN 116
Query: 620 MTD 622
+ D
Sbjct: 117 VKD 119
>UNIPROTKB|J3KS24 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR014013 PROSITE:PS51193
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
GO:GO:0016817 Ensembl:ENST00000577913 Uniprot:J3KS24
Length = 69
Score = 169 (64.5 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL 63
Y I G+ + FP++AY QL M +++ L +K + LLESPTG+GK+L LLC+ LAW++SL
Sbjct: 8 YTIGGVKIYFPYKAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSL 67
>UNIPROTKB|F5H235 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
HGNC:HGNC:2736 EMBL:AC008013 IPI:IPI01012139
ProteinModelPortal:F5H235 SMR:F5H235 Ensembl:ENST00000539049
ArrayExpress:F5H235 Bgee:F5H235 Uniprot:F5H235
Length = 297
Score = 116 (45.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
T K+ I FPF Y Q +M ++ + L+ + ESPTGTGK+L L+C L+W
Sbjct: 5 TQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSW 61
Score = 113 (44.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNAC 150
I Y SRTHSQL Q + E+K S + ++V LGSR+ LC++ +V L GS Q N+ C
Sbjct: 229 IYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSL-GSVQLINDRC 285
>UNIPROTKB|C9K0E8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 PROSITE:PS51193 SMART:SM00488 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 PANTHER:PTHR11472:SF5 HGNC:HGNC:2736
EMBL:AC008013 HOGENOM:HOG000070023 IPI:IPI01012155
ProteinModelPortal:C9K0E8 SMR:C9K0E8 STRING:C9K0E8
Ensembl:ENST00000438391 UCSC:uc001qvo.2 ArrayExpress:C9K0E8
Bgee:C9K0E8 Uniprot:C9K0E8
Length = 302
Score = 116 (45.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
T K+ I FPF Y Q +M ++ + L+ + ESPTGTGK+L L+C L+W
Sbjct: 5 TQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSW 61
Score = 113 (44.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNAC 150
I Y SRTHSQL Q + E+K S + ++V LGSR+ LC++ +V L GS Q N+ C
Sbjct: 200 IYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSL-GSVQLINDRC 256
>UNIPROTKB|Q880W4 [details] [associations]
symbol:PSPTO_3036 "Uncharacterized protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
PROSITE:PS51194 SMART:SM00491 GO:GO:0005524 GO:GO:0003677
GO:GO:0004003 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG1199 HOGENOM:HOG000183657 OMA:YLAFFSS
ProtClustDB:CLSK866841 RefSeq:NP_792831.1 GeneID:1184693
KEGG:pst:PSPTO_3036 PATRIC:19997439
BioCyc:PSYR223283:GJIX-3084-MONOMER Uniprot:Q880W4
Length = 761
Score = 116 (45.9 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 198 CPYFMTRELQKTVDIVFAPYNYLID-PWFRKGLGV--EWKNSILIFDEAHNLEGICADAA 254
CPY++++EL + D+V A YNY D GLG +W+ ++L+ DEAHN+
Sbjct: 331 CPYYLSQELARWADVVIADYNYYFDLSALLFGLGQLNQWRVAVLV-DEAHNMVERARQMY 389
Query: 255 SFDLSSGLLTACISEA 270
S L L A I A
Sbjct: 390 SASLDQSQLKALIQNA 405
Score = 91 (37.1 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 36/126 (28%), Positives = 56/126 (44%)
Query: 581 TSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQG 640
T +S + FAV G EG+D G ++ G AT+ P++ E
Sbjct: 647 TLSSQGIGFAVLGGAFGEGIDLP---GARLI--GAFIATLGLPQLNPVNE---------- 691
Query: 641 GEYKETKLS-FLSGEDW-YNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQI 698
++K+ + F +G D+ Y + V QA GRVIR + D G ++ D+RFA
Sbjct: 692 -QFKQRMAALFGAGYDYTYLYPGVQKVVQAAGRVIRSQSDSGVVMLIDDRFAERKVAQLF 750
Query: 699 SLWIQP 704
W +P
Sbjct: 751 PAWWRP 756
Score = 58 (25.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 11 VEFPFEAYDC-QLVYMEKVIQSLQNKCNALLESPTGTGKTL 50
++FP ++ Q E V +++ C + ++PTG GKT+
Sbjct: 182 LKFPHASFRTGQRALAESVYKAVSTGCCLMAQAPTGIGKTV 222
>UNIPROTKB|B4E0F6 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
GO:GO:0005524 GO:GO:0003677 GO:GO:0004003 EMBL:L47234
UniGene:Hs.487294 HGNC:HGNC:3434 ChiTaRS:ERCC2 EMBL:AK303358
IPI:IPI01014366 SMR:B4E0F6 STRING:B4E0F6 Ensembl:ENST00000221481
Ensembl:ENST00000591309 Uniprot:B4E0F6
Length = 127
Score = 100 (40.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKS 62
+ G+ V FP++ Y Q YM ++ ++L K + +LE P+GTGKT+ LL +A++++
Sbjct: 5 VDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 62
Score = 66 (28.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 97 ILYTSRTHSQLRQVIQEL-KTSNYRPKM---------VILGSREQLCIHREVS 139
++Y SRT ++ +VI+EL K N+ K + L SR+ LCIH E +
Sbjct: 70 LIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPETT 122
>UNIPROTKB|Q4JC68 [details] [associations]
symbol:Saci_0192 "ATP-dependent DNA helicase Saci_0192"
species:330779 "Sulfolobus acidocaldarius DSM 639" [GO:0032508 "DNA
duplex unwinding" evidence=IDA] [GO:0043139 "5'-3' DNA helicase
activity" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IDA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0051539 GO:GO:0004003
EMBL:CP000077 GenomeReviews:CP000077_GR eggNOG:COG1199
GO:GO:0043139 KO:K10844 RefSeq:YP_254904.1 PDB:3CRV PDB:3CRW
PDBsum:3CRV PDBsum:3CRW ProteinModelPortal:Q4JC68 GeneID:3474005
KEGG:sai:Saci_0192 HOGENOM:HOG000271001 OMA:CPYEYAK
ProtClustDB:CLSK802665 BioCyc:SACI330779:GH9J-270-MONOMER
EvolutionaryTrace:Q4JC68 Uniprot:Q4JC68
Length = 551
Score = 101 (40.6 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 51/229 (22%), Positives = 102/229 (44%)
Query: 95 PTILYTSRTHSQLRQVIQELKTSNYRPKMVI--LGSREQLCIHREVSLLRGSAQNNACRF 152
P +L+ RTH++ + ++L + + L + C++ E +++ C++
Sbjct: 48 PKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKG---AESEDIPCKY 104
Query: 153 LCKKGTNRRCNHHSRVADYMKNNPHLGDEPID-IEDLVNIGRTFGPCPYF-MTRELQKTV 210
KG+ + + +K + D P+ ++ L G CPY+ + L K
Sbjct: 105 CELKGS---------IVE-VKTD----DSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKA- 149
Query: 211 DIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEA 270
D++ Y Y +R+ + ++ + +++ DEAHNL+ + + LS + I ++
Sbjct: 150 DVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDKV-NELEERSLSEITIQMAIKQS 208
Query: 271 KNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEK--RIAEVPINSKE 317
K+ +RR S + LN LR ++L EK ++ VP SKE
Sbjct: 209 KS----EESRRILS--KLLNQ-----LREVVLPDEKYIKVENVPKLSKE 246
Score = 72 (30.4 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 19 DCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATL 57
D Q +KVI+ L+N L +PTG+GKTL L +L
Sbjct: 6 DWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSL 44
Score = 71 (30.1 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 30/123 (24%), Positives = 56/123 (45%)
Query: 570 AIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRA---VVITGMPFATMTDPKVR 626
++ED + + ++ + + +V +GK++EG++ ++ VVI G+P+ D
Sbjct: 425 SVEDLYSAI--SANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDD---- 478
Query: 627 LKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCD 686
YL + AQ + FL + A + QA+GR IR +D + D
Sbjct: 479 ----YLKILAQRVSLKMNRENEEFL-----FKIPALVTIKQAIGRAIRDVNDKCNVWLLD 529
Query: 687 ERF 689
+RF
Sbjct: 530 KRF 532
Score = 56 (24.8 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 437 SIILTSGTLSPMDSFAQE--LKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRN 494
SIIL SGTL P + + +K N L ++ I + + +G + S Y
Sbjct: 317 SIILMSGTLPPREYMEKVWGIKRNM-LYLDVEREIQKRVSGSYECYIGVD---VTSKYDM 372
Query: 495 RDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIA 534
R +K+ + ++ I +L+ FPSY +MD+ ++
Sbjct: 373 RSDNMWKR-YADYLLKIYFQAKANVLVVFPSYEIMDRVMS 411
>WB|WBGene00021759 [details] [associations]
symbol:Y50D7A.11 species:6239 "Caenorhabditis elegans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003677 GO:GO:0040035 EMBL:FO081772 GO:GO:0004003
eggNOG:COG1199 GeneTree:ENSGT00550000075092 RefSeq:NP_001022900.1
UniGene:Cel.9728 ProteinModelPortal:Q7YZG6 SMR:Q7YZG6 PaxDb:Q7YZG6
EnsemblMetazoa:Y50D7A.11 GeneID:3565352 KEGG:cel:CELE_Y50D7A.11
UCSC:Y50D7A.11 CTD:3565352 WormBase:Y50D7A.11 HOGENOM:HOG000203646
InParanoid:Q7YZG6 NextBio:956143 Uniprot:Q7YZG6
Length = 197
Score = 110 (43.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 6 IRGIDVEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
I G+ V FP++ Y Q++YM++V ++L + + LLE P+GTGKT+ LL LA+
Sbjct: 5 IDGLKVLFPYDYVYPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLLSLVLAY 59
Score = 79 (32.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTS-NYRPK---------MVILGSREQLCIHREVSLLR 142
KL ++Y SRT ++ + ++E+K +Y K V + +R+ LC++ V+ LR
Sbjct: 66 KLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCVNEPVAALR 125
Query: 143 -GSAQNNACRFL-CKKGTNRRCNHHSRVA-DYMKN 174
G+ ++AC+ L +R + A DY +N
Sbjct: 126 FGNTVDSACQKLTASSARQKRAEDPTLEACDYFEN 160
>UNIPROTKB|B4DMS8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
UniGene:Hs.443960 HGNC:HGNC:2736 EMBL:AC008013 EMBL:AK297607
IPI:IPI00909981 SMR:B4DMS8 STRING:B4DMS8 Ensembl:ENST00000542129
HOGENOM:HOG000070023 HOVERGEN:HBG104020 Uniprot:B4DMS8
Length = 304
Score = 116 (45.9 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
T K+ I FPF Y Q +M ++ + L+ + ESPTGTGK+L L+C L+W
Sbjct: 5 TQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSW 61
Score = 79 (32.9 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQ 131
I Y SRTHSQL Q + E+K S + ++V LGSR++
Sbjct: 229 IYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQR 265
>UNIPROTKB|F6WZM0 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
HGNC:HGNC:2736 EMBL:AC008013 IPI:IPI00943235
ProteinModelPortal:F6WZM0 SMR:F6WZM0 Ensembl:ENST00000540935
ArrayExpress:F6WZM0 Bgee:F6WZM0 Uniprot:F6WZM0
Length = 288
Score = 113 (44.8 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 97 ILYTSRTHSQLRQVIQELKTSNYRP--KMVILGSREQLCIHREVSLLRGSAQ--NNAC 150
I Y SRTHSQL Q + E+K S + ++V LGSR+ LC++ +V L GS Q N+ C
Sbjct: 203 IYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSL-GSVQLINDRC 259
Score = 80 (33.2 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 39 LLESPTGTGKTLCLLCATLAW 59
+ ESPTGTGK+L L+C L+W
Sbjct: 15 IFESPTGTGKSLSLICGALSW 35
>UNIPROTKB|Q724Q2 [details] [associations]
symbol:LMOf2365_0172 "Putative uncharacterized protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 PROSITE:PS51194 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 EMBL:AE017262 GenomeReviews:AE017262_GR
eggNOG:COG1199 HOGENOM:HOG000183657 OMA:YLAFFSS RefSeq:YP_012782.1
ProteinModelPortal:Q724Q2 STRING:Q724Q2 GeneID:2798762
KEGG:lmf:LMOf2365_0172 PATRIC:20321523 ProtClustDB:CLSK2518435
Uniprot:Q724Q2
Length = 779
Score = 111 (44.1 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
Identities = 56/267 (20%), Positives = 116/267 (43%)
Query: 99 YTSRTHSQ--LRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKK 156
+T++T ++ + E++ + V + +++++C E + + C+F +
Sbjct: 241 FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDE-----RKCEPDHCQFA--R 293
Query: 157 GTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAP 216
G R N + D +++ +E I + + R + CP+ ++ ++ D++
Sbjct: 294 GYYDRLNE--ALFDMLQS-----EEAITRQVVEGYARKYTLCPFELSLDVALFCDVIVCD 346
Query: 217 YNYLIDP------WFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEA 270
YNYL DP +F +G G K + L+ DE HNL D A S+ L + + +
Sbjct: 347 YNYLFDPVVYLKRFFAEGPG---KYTFLV-DEVHNL----VDRARSMYSATLKKSTVMQV 398
Query: 271 KNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYEL 330
K +D +R ++ +N + +L L LEK + EL +
Sbjct: 399 KRGLDSKKNKRLLNAINVMNKE-MIVLNKKLKDLEKTTY---VQKSELVDWNAAVLKFTF 454
Query: 331 LADLNITQETAYKL-IDIVEVAAELLQ 356
+A + Q T +L +D++++ E L+
Sbjct: 455 VAKEWLPQNTQSELQVDVLDLYFESLR 481
Score = 83 (34.3 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
Identities = 33/140 (23%), Positives = 58/140 (41%)
Query: 553 KHKKPVV--EPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAV 610
K K P + + +++++ E ++ + + F V G SEG+D +
Sbjct: 619 KEKYPNIRLQKQETAMDEKQREHFLEDFHAENVETLIGFCVLGGVFSEGVDLRGNRLVGA 678
Query: 611 VITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVG 670
+ G+ A + +K +Y + + QG +Y Y V QAVG
Sbjct: 679 AVVGVGLAQLNHESDLIK-DYYN-ETIGQGFDYA------------YQIPGMNKVLQAVG 724
Query: 671 RVIRHRHDYGAIIFCDERFA 690
RVIR D G ++ +ERF+
Sbjct: 725 RVIRGESDRGVVLLIEERFS 744
Score = 55 (24.4 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 10 DVEFPFEAYDC-QLVYMEKVIQSLQNKCNALLESPTGTGKTLCLL 53
++ FP++ Y Q V +++ ++ + E+PTG GKT+ L
Sbjct: 179 ELTFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTL 223
>UNIPROTKB|Q4KBT0 [details] [associations]
symbol:PFL_3198 "DEAD 2 domain protein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 PROSITE:PS51194
SMART:SM00491 GO:GO:0005524 GO:GO:0003677 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0004003 eggNOG:COG1199
RefSeq:YP_260303.1 ProteinModelPortal:Q4KBT0 STRING:Q4KBT0
GeneID:3478111 KEGG:pfl:PFL_3198 PATRIC:19875717
HOGENOM:HOG000183657 OMA:YLAFFSS ProtClustDB:CLSK866841
BioCyc:PFLU220664:GIX8-3213-MONOMER Uniprot:Q4KBT0
Length = 758
Score = 102 (41.0 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 145 AQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDE-PI-DIEDLVNIGRTFGPCPYFM 202
A++ AC L K C D + + P+ D + L + CPY++
Sbjct: 270 ARDKACEHLDKACHGESCPLAKGFYDRLPAARQAASQVPLLDRQALREVALEHQVCPYYL 329
Query: 203 TRELQKTVDIVFAPYNYLID-PWFRKGLGV--EWKNSILIFDEAHNL 246
++E+ + D+V A YNY D GL +W+ ++L+ DEAHNL
Sbjct: 330 SQEMARWSDLVVADYNYYFDFSALLFGLAQANQWQVAVLV-DEAHNL 375
Score = 93 (37.8 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 35/131 (26%), Positives = 58/131 (44%)
Query: 572 EDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREY 631
+D++ + + + FAV G EG+D G ++ G AT+ P++ E
Sbjct: 635 QDFLQQFRPEGQG--IGFAVLGGAFGEGIDLP---GSKLI--GAFVATLGLPQLNPLNEQ 687
Query: 632 LDLQAQSQGGEYKETKLSFLSGEDW-YNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFA 690
+ + + G SG D+ Y + V QA GRVIR + D G ++ D+RFA
Sbjct: 688 MKQRMAALFG----------SGYDYTYLYPGLQKVVQAAGRVIRGQSDRGVLVLIDDRFA 737
Query: 691 HPSRKSQISLW 701
P + + W
Sbjct: 738 EPRVRQLLPSW 748
Score = 53 (23.7 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 10 DVEFPFEAYDC-QLVYMEKVIQSLQN-KCNALLESPTGTGKTL 50
D+ FP + Q E V +++ +C L ++PTG GKTL
Sbjct: 175 DLRFPHAEFRRGQRALAESVYKAVSTGRC-LLAQAPTGIGKTL 216
>TIGR_CMR|CPS_3886 [details] [associations]
symbol:CPS_3886 "ATP-dependent helicase" species:167879
"Colwellia psychrerythraea 34H" [GO:0004386 "helicase activity"
evidence=ISS] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR011545 InterPro:IPR014013 Pfam:PF00270 Pfam:PF06733
Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199 KO:K03722
OMA:KDTGFAE HOGENOM:HOG000242574 ProtClustDB:CLSK870213
RefSeq:YP_270548.1 ProteinModelPortal:Q47XC2 STRING:Q47XC2
GeneID:3520331 KEGG:cps:CPS_3886 PATRIC:21470671
BioCyc:CPSY167879:GI48-3903-MONOMER Uniprot:Q47XC2
Length = 647
Score = 107 (42.7 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 40/127 (31%), Positives = 60/127 (47%)
Query: 568 PLAIEDYMAKLKDTSTSGAVFFAVCRGKVS--EGLDFADHAGRAVVITGMPFATMTDPKV 625
PL ++ MAK K AV S EG+D V+I +PFA+ DP +
Sbjct: 504 PLLVQGKMAKRKLLEQFVEQDDAVLLATASFWEGIDVRGDKLTCVIIDKLPFASPDDPLL 563
Query: 626 RLKREYLDLQAQSQGGE-YKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIF 684
+ + E D++ Q GGE + + +L QA A+ Q VGR+IR D G ++
Sbjct: 564 QARCE--DVRRQ--GGEPFSQIQLP----------QAVIALKQGVGRLIRDVSDRGVLVI 609
Query: 685 CDERFAH 691
CD+R +
Sbjct: 610 CDDRLVN 616
Score = 77 (32.2 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 100 TSRTHSQLRQVIQELKTSNYRPKMVILGSR---EQLCIHREVSLLRGSAQNNACRFLCKK 156
T +T + L L N + +V G++ EQL H+++ L++ + +NA L K
Sbjct: 57 TGKTFAYLIPAFLSLNPKNPKKIVVSTGTKNLQEQL-FHKDIPLIKKALASNAQVALLKG 115
Query: 157 GTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNI 191
N CN+ R+A Y + L D + ++DLV +
Sbjct: 116 RANYLCNY--RLAQYQDSRGQL-DAQM-LQDLVKV 146
Score = 52 (23.4 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 22/92 (23%), Positives = 36/92 (39%)
Query: 198 CPYFMTRELQKTVDIVFAPYN-YLIDPWFRK-GLG-VEWKNSILIFDEAHNLEGICADAA 254
C R+ DI+ ++ + D + G G + K ++IFDEAH + I ++
Sbjct: 192 CHLVRARQKASDADIIVVNHHLFFADMALKDTGFGELIPKAQVMIFDEAHQIGDIASEYF 251
Query: 255 SFDLSSGLLTACISEAKNCIDISSTRRGQSSD 286
SS L C D+ R +D
Sbjct: 252 GEAFSSKQLVDL------CTDVLQVHRSSLTD 277
Score = 48 (22.0 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 28 VIQSLQNKCNALLESPTGTGKTLCLL 53
V ++ + + ++E+ TGTGKT L
Sbjct: 39 VAHAIDKQSSLIVEAGTGTGKTFAYL 64
>UNIPROTKB|I3LHB7 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006555 Pfam:PF13307
GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
GeneTree:ENSGT00550000075092 Ensembl:ENSSSCT00000032501 OMA:GGEGREM
Uniprot:I3LHB7
Length = 138
Score = 114 (45.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 478 IVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWK 537
I+ G ++S + R+ I + GN ++ ++ +VPDG++ FF SY M+ +A W
Sbjct: 19 IIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVAAWY 78
Query: 538 NTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDY 574
I E I ++K +E + + +A+E Y
Sbjct: 79 EQG------ILENIQRNKLLFIETQDGAETSVALEKY 109
>UNIPROTKB|F5GYY1 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR014013
PROSITE:PS51193 HGNC:HGNC:2736 GO:GO:0016817 EMBL:AC008013
IPI:IPI01010700 ProteinModelPortal:F5GYY1 SMR:F5GYY1
Ensembl:ENST00000542244 ArrayExpress:F5GYY1 Bgee:F5GYY1
Uniprot:F5GYY1
Length = 171
Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
T K+ I FPF Y Q +M ++ + L+ + ESPTGTGK+L L+C L+W
Sbjct: 5 TQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSW 61
>UNIPROTKB|F5GXL6 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR014013
PROSITE:PS51193 HGNC:HGNC:2736 GO:GO:0016817 EMBL:AC008013
IPI:IPI01010239 ProteinModelPortal:F5GXL6 SMR:F5GXL6
Ensembl:ENST00000535317 ArrayExpress:F5GXL6 Bgee:F5GXL6
Uniprot:F5GXL6
Length = 192
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
T K+ I FPF Y Q +M ++ + L+ + ESPTGTGK+L L+C L+W
Sbjct: 41 TQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSW 97
>TAIR|locus:1006230139 [details] [associations]
symbol:AT2G05635 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002685 GO:GO:0004386
IPI:IPI00528463 RefSeq:NP_973426.1 UniGene:At.51309
ProteinModelPortal:F4IHC3 EnsemblPlants:AT2G05635.1 GeneID:2745433
KEGG:ath:AT2G05635 PhylomeDB:F4IHC3 Uniprot:F4IHC3
Length = 146
Score = 105 (42.0 bits), Expect = 0.00043, P = 0.00043
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 93 KLPTILYTSRTHSQLRQVIQELKTSNYR-PKMVILGSREQLCIHREVS 139
K+PTI Y SRTHSQ+ QVI+E + + YR P V++G L +H + S
Sbjct: 93 KIPTIYYASRTHSQITQVIREYRKTGYRVPMAVLVGG---LGVHEDKS 137
>UNIPROTKB|F1SK82 [details] [associations]
symbol:F1SK82 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR014013 PROSITE:PS51193
GeneTree:ENSGT00530000063199 GO:GO:0016817 EMBL:CU861969
Ensembl:ENSSSCT00000000811 OMA:CAVAKHP Uniprot:F1SK82
Length = 210
Score = 114 (45.2 bits), Expect = 0.00086, P = 0.00086
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 8 GIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAW 59
GI FPF Y Q +M + Q L+ + ESPTGTGK+L L+C L+W
Sbjct: 10 GIHFPFPFTPYPIQKDFMAALYQVLEAGKIGIFESPTGTGKSLSLICGALSW 61
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1036 1003 0.00078 123 3 11 22 0.40 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 111
No. of states in DFA: 632 (67 KB)
Total size of DFA: 475 KB (2223 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 88.28u 0.13s 88.41t Elapsed: 00:00:04
Total cpu time: 88.32u 0.14s 88.46t Elapsed: 00:00:04
Start: Tue May 21 13:44:12 2013 End: Tue May 21 13:44:16 2013
WARNINGS ISSUED: 1