Query 001656
Match_columns 1036
No_of_seqs 175 out of 1593
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 17:00:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001656.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_952-956//hhsearch_pdb/001656hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 1.0 1 1 773.3 44.5 595 15-729 2-615 (620)
2 3crv_A XPD/RAD3 related DNA he 1.0 1 1 669.5 42.7 522 14-697 1-540 (551)
3 2vl7_A XPD; helicase, unknown 1.0 1 1 606.1 38.3 518 13-698 4-531 (540)
4 3pey_A ATP-dependent RNA helic 1.0 1 1 141.4 30.3 364 12-723 22-393 (395)
5 1xti_A Probable ATP-dependent 1.0 1 1 140.2 30.1 114 508-687 241-356 (391)
6 3sqw_A ATP-dependent RNA helic 1.0 1 1 138.2 29.9 352 11-688 37-398 (579)
7 1fuu_A Yeast initiation factor 1.0 1 1 133.9 15.1 135 13-248 39-176 (394)
8 1s2m_A Putative ATP-dependent 1.0 1 1 133.1 31.8 134 13-246 39-175 (400)
9 3i5x_A ATP-dependent RNA helic 1.0 1 1 132.9 30.1 350 12-687 89-448 (563)
10 1hv8_A Putative ATP-dependent 1.0 1 1 132.0 28.6 129 508-704 230-359 (367)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=1.00 E-value=1 Score=773.33 Aligned_cols=595 Identities=22% Similarity=0.315 Sum_probs=435.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99978999999999999971895489556899726999999998874306766457655555668877668877899999
Q 001656 15 FEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKL 94 (1036)
Q Consensus 15 fepr~~Q~e~m~~V~~aL~~g~~~llEAPTGTGKTLa~L~~aLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1036)
|+||++|.+||++|++++.+|+++++|||||||||++||+|+|.|....+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~------------------------------ 51 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK------------------------------ 51 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC------------------------------
T ss_conf 98987899999999999976998899889999779999999998666049------------------------------
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCC-CHHHHHHHCCCCHH---HHHHHHHC---CCCCCCCCC
Q ss_conf 9699976888899999999982499--972887078543234-17787631456427---86998520---678767510
Q 001656 95 PTILYTSRTHSQLRQVIQELKTSNY--RPKMVILGSREQLCI-HREVSLLRGSAQNN---ACRFLCKK---GTNRRCNHH 165 (1036)
Q Consensus 95 pkIiy~TRThsQl~Q~v~ELkkl~~--~~k~~iLgsR~~lCi-n~~v~~l~~~~~~~---~C~~L~k~---~~~~~C~~~ 165 (1036)
++|+|+|+||+|+.|++++++++.. .+++++++||..+|+ |+.+..+.+...++ .|+.+.+. .....|+|+
T Consensus 52 ~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~ 131 (620)
T 4a15_A 52 LKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYF 131 (620)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 76999888799999999999998600584799997787643457565540531034678887877741135787879765
Q ss_pred CCHHHH--HHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHC----CCCCCCCCEEE
Q ss_conf 108888--552999999998834676303478985367878530686399936621249765401----69899884899
Q 001656 166 SRVADY--MKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKG----LGVEWKNSILI 239 (1036)
Q Consensus 166 ~~l~~~--~~~~~~l~~~~~dIedlv~~g~~~~~CPY~~sR~~~~~ADIIV~nY~yLld~~ir~~----l~i~~~~~IlI 239 (1036)
.+.+.. ..+ .+..+..|+|+++..|+.++.||||.+|+.+..|||||+||+|||++.+|.. ++++++++++|
T Consensus 132 ~~~~~~gd~~~--~l~~~~~die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI 209 (620)
T 4a15_A 132 NFKIRSDETKR--FLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVII 209 (620)
T ss_dssp SGGGGCHHHHH--HHHHHCCCHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCCCCCCHHH--HHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 35573212567--7505799999999975646979029999776559899958256448999998888614576770899
Q ss_pred EECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 94765807899733035039889999999987522100012478988889913699999999999999983554633468
Q 001656 240 FDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELG 319 (1036)
Q Consensus 240 iDEAHNLed~a~~a~S~~Ls~~~L~~~i~el~~~~~~~~~~r~~~~~~~~~~~~~~~L~~ll~~L~~~i~~l~~~~~~~~ 319 (1036)
|||||||+|+|++++|.+++..++..+.+++..+..... + . .......+..+...++..+..+... ....
T Consensus 210 ~DEAHNL~d~a~~~~S~~ls~~~l~~~~~~l~~~~~~~~--~-----~--~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 279 (620)
T 4a15_A 210 LDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPEL--S-----Q--KIHVSDLIEMIRSALQSMVSERCGK-GDVR 279 (620)
T ss_dssp ETTGGGHHHHHHHHHCEEEEHHHHHHHHHHHHHTTCCEE--E-----T--TEEHHHHHHHHHHHHHHHHHHHCSS-SCEE
T ss_pred EECCCCHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHH--H-----H--HHHHHHHHHHHHHHHHHHHHHHHCC-CCCC
T ss_conf 978776598998862545089999999999999876532--2-----3--6899999999999999999986054-5667
Q ss_pred CCCCCCCHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 77996108999983-01139999999999999999998844211100048999999999999984129887752899999
Q 001656 320 FTKPGPYIYELLAD-LNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVR 398 (1036)
Q Consensus 320 ~~~pg~~i~e~l~~-~~~~~~~~~~L~~~l~~i~~~L~~~~~~~~~~~~~~~L~~l~~~L~~i~~~~~~~~~~~y~v~v~ 398 (1036)
. .+. .+.+.+.. .+.....+..+.+.+..+.+.+.+... .........+..+.+++..+ .... ...|..|++
T Consensus 280 ~-~~~-~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~fl~~~-~~~~---~~~~~~~~~ 352 (620)
T 4a15_A 280 I-RFQ-EFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKE-KVGKVPFSYCSSVASRIIAF-SDQD---EEKYAAILS 352 (620)
T ss_dssp E-CTH-HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCCCHHHHHHHHHHHH-HTSC---TTTEEEEEE
T ss_pred C-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHH-HHCC---CCCEEEEEE
T ss_conf 7-859-999999875152679999999999999999974022-23543003999999999997-5167---788799998
Q ss_pred ECCCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 72531132213988844999985817878995603688499984579993879987299987222289767778638998
Q 001656 399 EADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGI 478 (1036)
Q Consensus 399 ~~~~~~~~~~~~~~~~~L~~~cl~Ps~~l~~ll~~~~~svILtSaTLsP~~~f~~~LGl~~~~~le~p~v~~~~qi~v~i 478 (1036)
. . .+..|+++|++|+..|+ ++ .++++|||||||+|+++|.+.||++ ...++.+++|+.++..+++
T Consensus 353 ~----------~-~~~~l~~~~l~~~~~l~-~~--~~~~~il~SaTL~p~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~ 417 (620)
T 4a15_A 353 P----------E-DGGYMQAACLDPSGILE-VL--KESKTIHMSGTLDPFDFYSDITGFE-IPFKKIGEIFPPENRYIAY 417 (620)
T ss_dssp C----------G-GGCEEEEEECCTHHHHG-GG--GGSEEEEEESSCCSHHHHHHHHCCC-CCEEECCCCSCGGGEEEEE
T ss_pred E----------C-CCCEEEEEECCHHHHHH-HH--HCCEEEEECCCCCCHHHHHHHHCCC-CEEEECCCCCCHHHEEEEE
T ss_conf 5----------7-98479999898899999-98--4794899840897489999981997-5653468998889907998
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCE
Q ss_conf 14799976434444579979999999999999998759969999569898999999985037898235999985269853
Q 001656 479 VPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV 558 (1036)
Q Consensus 479 v~~gp~~~~l~sty~~r~~~~y~~~L~~~I~~l~~~vpggvLVfFpSY~~Le~v~~~l~~~~~~~~~~l~~~i~~~k~if 558 (1036)
+.. +.++|+.|+ +++..++++.|.++++.+|||+|||||||.+|+++++.|+ ... .+
T Consensus 418 ~~~------~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~-~~~------------~~--- 474 (620)
T 4a15_A 418 YDG------VSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS-FEH------------MK--- 474 (620)
T ss_dssp ECC------C-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC-SCC------------EE---
T ss_pred ECC------CCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH-HCC------------HH---
T ss_conf 479------997677889-8999999999999998589988999079999999999998-505------------11---
Q ss_pred ECCCCC--CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 317999--973899999999830289998299998069742233579997429999389999999999999999999981
Q 001656 559 VEPRQS--SLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQA 636 (1036)
Q Consensus 559 iE~k~~--~~~~~~l~~f~~~i~~~~~~gaVLlgV~rGk~sEGIDf~g~~~R~VIIvGLPFp~p~Dp~v~lk~~yl~~~~ 636 (1036)
|.++. .+...++++|+ ++++|||||+||+|||||||+|+.+++|||+|||||+| ||.+++|++|+++.+
T Consensus 475 -~~q~~~~~~~~~ll~~f~-------~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~ 545 (620)
T 4a15_A 475 -EYRGIDQKELYSMLKKFR-------RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKY 545 (620)
T ss_dssp -CCTTCCSHHHHHHHHHHT-------TSCCEEEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHH
T ss_pred -CCCCCCHHHHHHHHHHHC-------CCCCEEEEEECCCEECCCCCCCCCEEEEEEECCCCCCC-CHHHHHHHHHHHHHH
T ss_conf -068997668999999861-------68858999725740013248998627999976898988-999999999999853
Q ss_pred CCCCCCCCHHHCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHCCCCHHHH
Q ss_conf 57899620000025786420-69999999997417753147981799997047788023658976110001204876689
Q 001656 637 QSQGGEYKETKLSFLSGEDW-YNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDV 715 (1036)
Q Consensus 637 ~~~f~~~~~~~~~~l~g~~~-y~~~A~rkv~QaiGRlIR~~~D~GaiiLlD~Rf~~~~y~~~l~~wl~~~~~~~~~~~e~ 715 (1036)
+++| .| |..+|+++++||+||+|||++|||+|+|+|+|| ++|++.||. ++... . .
T Consensus 546 g~~~--------------~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~--~~~~~~LP~-~~~~~---~----~ 601 (620)
T 4a15_A 546 GKGW--------------EYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA--GQFRKFIPD-MKKTS---D----P 601 (620)
T ss_dssp SCHH--------------HHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG--GGGGGGSTT-CEEES---C----H
T ss_pred CCCC--------------HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCH--HHHHHHCCC-HHHHC---C----C
T ss_conf 8980--------------587699999999998575655778669999981456--999876871-45306---8----4
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999986305
Q 001656 716 VYTLTRFFREERIC 729 (1036)
Q Consensus 716 ~~~L~~Ff~~~~~~ 729 (1036)
...+.+||.+..+.
T Consensus 602 ~~~~~~f~~~~~~~ 615 (620)
T 4a15_A 602 ASDIYNFFISAQAR 615 (620)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCHHHH
T ss_conf 89999998382656
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=1.00 E-value=1 Score=669.54 Aligned_cols=522 Identities=22% Similarity=0.307 Sum_probs=385.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997899999999999997189548955689972699999999887430676645765555566887766887789999
Q 001656 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSK 93 (1036)
Q Consensus 14 Pfepr~~Q~e~m~~V~~aL~~g~~~llEAPTGTGKTLa~L~~aLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1036)
.|++|++|.+||..|++++.+|+++++|||||||||++||+|++.+ +
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----~----------------------------- 47 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----K----------------------------- 47 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----C-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHC----C-----------------------------
T ss_conf 9988889999999999999739968998899950899999999967----9-----------------------------
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 9969997688889999999998249--99728870785432341778763145642786998520678767510108888
Q 001656 94 LPTILYTSRTHSQLRQVIQELKTSN--YRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADY 171 (1036)
Q Consensus 94 ~pkIiy~TRThsQl~Q~v~ELkkl~--~~~k~~iLgsR~~lCin~~v~~l~~~~~~~~C~~L~k~~~~~~C~~~~~l~~~ 171 (1036)
++|+|+|+|+.|+.|+.++++++. ..+++++++||.++|+++.+. .... ...|. .|+++.+...
T Consensus 48 -~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~-~~~~--~~~c~---------~c~~~~~~~~- 113 (551)
T 3crv_A 48 -PKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKG-AESE--DIPCK---------YCELKGSIVE- 113 (551)
T ss_dssp -SEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTT-CCGG--GCCGG---------GCTTTTCCCC-
T ss_pred -CEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHC-CCCC--CCCCC---------CCCCCCCCCC-
T ss_conf -82999918889999999999998652485279972641247683002-7885--43359---------9999666541-
Q ss_pred HHHCCCCCCCCCCHHHHHHH----CCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCCEEEEECCCCHH
Q ss_conf 55299999999883467630----34789853678785306863999366212497654016989988489994765807
Q 001656 172 MKNNPHLGDEPIDIEDLVNI----GRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLE 247 (1036)
Q Consensus 172 ~~~~~~l~~~~~dIedlv~~----g~~~~~CPY~~sR~~~~~ADIIV~nY~yLld~~ir~~l~i~~~~~IlIiDEAHNLe 247 (1036)
.+ +..++|+++.. |+.++.||||.+|+.+..|||||+||+|||++.++..+++.+++.++||||||||+
T Consensus 114 ------~g-~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~ 186 (551)
T 3crv_A 114 ------VK-TDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLD 186 (551)
T ss_dssp ------CC-CCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGG
T ss_pred ------CC-CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEECCHHHCCHHHHHHCCCCCCCEEEEEECCCCHH
T ss_conf ------24-66999999999997497178283599996642699999680674589999861778577099996545657
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCC-CCCC
Q ss_conf 8997330350398899999999875221000124789888899136999999999999999835546334-6877-9961
Q 001656 248 GICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKE-LGFT-KPGP 325 (1036)
Q Consensus 248 d~a~~a~S~~Ls~~~L~~~i~el~~~~~~~~~~r~~~~~~~~~~~~~~~L~~ll~~L~~~i~~l~~~~~~-~~~~-~pg~ 325 (1036)
| |++++|.+|+..++..+++++..... ..++..+.+.+.+....... .... .+..
T Consensus 187 d-~~~~~s~~ls~~~l~~~~~~l~~~~~----------------------~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 243 (551)
T 3crv_A 187 K-VNELEERSLSEITIQMAIKQSKSEES----------------------RRILSKLLNQLREVVLPDEKYIKVENVPKL 243 (551)
T ss_dssp G-GGGGGCEEEEHHHHHHHHHHCSCHHH----------------------HHHHHHHHHHHTTSCCSCSSCEECSCCCCC
T ss_pred H-HHHHHCEECCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 7-87764432379999999999998777----------------------999999999999986313543146568078
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHH
Q ss_conf 08999983011399999999999999999988442111000489999999999999841298877528999997253113
Q 001656 326 YIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAA 405 (1036)
Q Consensus 326 ~i~e~l~~~~~~~~~~~~L~~~l~~i~~~L~~~~~~~~~~~~~~~L~~l~~~L~~i~~~~~~~~~~~y~v~v~~~~~~~~ 405 (1036)
. ...+..+.+.+..+.+..... . ......+..+.+++..+.. . . .| + ..
T Consensus 244 ~-----------~~~l~~l~~~l~~~~~~~~~~---~--~~~~~~~~~l~~~~~~~~~-~-~----~~-v-~~------- 292 (551)
T 3crv_A 244 S-----------KEELEILADDYEDIRKDSLKQ---G--KVNKIHIGSILRFFSLLSI-G-S----FI-P-FS------- 292 (551)
T ss_dssp C-----------HHHHHHHHHHHHHHHHHHHHT---T--CBCCCHHHHHHHHHHHHHH-S-S----CE-E-EE-------
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHC---C--CCCCCHHHHHHHHHHHHHC-C-C----CE-E-EC-------
T ss_conf 8-----------999999999999999866433---8--8665369999999999844-6-9----85-9-64-------
Q ss_pred HHHCCCCCCEEEEEECCCHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHCCCCCC-----CCCCCCCCCCCCEEEEEC
Q ss_conf 221398884499998581787899560368-84999845799938799872999872-----222897677786389981
Q 001656 406 DVLKGKASRTLSWWCFNPGIAMQEFSRLEV-GSIILTSGTLSPMDSFAQELKLNFPL-----RVENPHVITSKQIWAGIV 479 (1036)
Q Consensus 406 ~~~~~~~~~~L~~~cl~Ps~~l~~ll~~~~-~svILtSaTLsP~~~f~~~LGl~~~~-----~le~p~v~~~~qi~v~iv 479 (1036)
. .+ ++.++|++|+..|+ ++. ++ +++|||||||+|+++|.+.||++++. .+..+++| .+|..+++
T Consensus 293 ----~-~~-~l~~~pl~~~~~l~-~~~-~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v- 362 (551)
T 3crv_A 293 ----Y-SK-RLVIKNPEISYYLN-LLN-DNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYI- 362 (551)
T ss_dssp ----E-TT-EEEEECCCTHHHHG-GGG-CTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEE-
T ss_pred ----C-CC-EEEEEECCHHHHHH-HHH-CCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCEEECCCCC-CCCEEEEE-
T ss_conf ----6-99-89999799799999-986-058569997127896799999858997633222035527757-77527999-
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 47999764344445799799999999999999987599699995698989999999850378982359999852698533
Q 001656 480 PVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVV 559 (1036)
Q Consensus 480 ~~gp~~~~l~sty~~r~~~~y~~~L~~~I~~l~~~vpggvLVfFpSY~~Le~v~~~l~~~~~~~~~~l~~~i~~~k~ifi 559 (1036)
+.+ +.++|.+|+ +++.+.+++.|.++++.+|||+|||||||.+|+++++.+ .+.+++
T Consensus 363 ~~~-----~~~~~~~r~-~~~~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~~-----------------~~~v~~ 419 (551)
T 3crv_A 363 GVD-----VTSKYDMRS-DNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSRI-----------------SLPKYV 419 (551)
T ss_dssp ECS-----CCCCTTTCC-HHHHHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTTC-----------------CSSEEE
T ss_pred ECC-----CCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC-----------------CCCEEE
T ss_conf 578-----787423279-899999999999999728997799964999999999861-----------------985898
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC---CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 17999973899999999830289998299998069742233579---99742999938999999999999999999998-
Q 001656 560 EPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFA---DHAGRAVVITGMPFATMTDPKVRLKREYLDLQ- 635 (1036)
Q Consensus 560 E~k~~~~~~~~l~~f~~~i~~~~~~gaVLlgV~rGk~sEGIDf~---g~~~R~VIIvGLPFp~p~Dp~v~lk~~yl~~~- 635 (1036)
|+++. +..++++.|+. .+++||||||||+|||||||+ |+.||+|||+|||||+| ||.+++|++|+++.
T Consensus 420 q~~~~-~~~~~~~~~~~------~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~ 491 (551)
T 3crv_A 420 ESEDS-SVEDLYSAISA------NNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKM 491 (551)
T ss_dssp CCSSC-CHHHHHHHTTS------SSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCS
T ss_pred CCCCC-CHHHHHHHHHH------CCCEEEEEEECCEECCCCCCCCCCCCCEEEEEEECCCCCCC-CHHHHHHHHHHHHHH
T ss_conf 69999-88999999972------69839999855620366455556776534999983799998-999999999999864
Q ss_pred CCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHH
Q ss_conf 15789962000002578642069999999997417753147981799997047788023658
Q 001656 636 AQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQ 697 (1036)
Q Consensus 636 ~~~~f~~~~~~~~~~l~g~~~y~~~A~rkv~QaiGRlIR~~~D~GaiiLlD~Rf~~~~y~~~ 697 (1036)
+++.| ..+|..+|+++++||+||+|||++|||+|+|+|.||.++.|+..
T Consensus 492 g~~~~-------------~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~~~~~~~~ 540 (551)
T 3crv_A 492 NRENE-------------EFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFESLYWKKN 540 (551)
T ss_dssp STTTH-------------HHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGGGSHHHHHH
T ss_pred CCCHH-------------HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCHHHHH
T ss_conf 87416-------------88878899999999725673688852899996001052034540
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=1.00 E-value=1 Score=606.07 Aligned_cols=518 Identities=19% Similarity=0.291 Sum_probs=362.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999789999999999999718954895568997269999999988743067664576555556688776688778999
Q 001656 13 FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDS 92 (1036)
Q Consensus 13 FPfepr~~Q~e~m~~V~~aL~~g~~~llEAPTGTGKTLa~L~~aLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (1036)
.+|+||+.|.+||..|++++.+++++++|||||||||++||+|++.+.
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~-------------------------------- 51 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLK-------------------------------- 51 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHT--------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCC--------------------------------
T ss_conf 789989899999999999998299789985899867899999999579--------------------------------
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 99969997688889999999998249997288707854323417787631456427869985206787675101088885
Q 001656 93 KLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYM 172 (1036)
Q Consensus 93 ~~pkIiy~TRThsQl~Q~v~ELkkl~~~~k~~iLgsR~~lCin~~v~~l~~~~~~~~C~~L~k~~~~~~C~~~~~l~~~~ 172 (1036)
++|+|+|+|+++++|++++++++ .+++++++||.++|+++.+..... ...|. .|.++......
T Consensus 52 --~~~~~~~~t~~l~~q~~~~~~~l--~~~~~~l~gr~~lC~~~~~~~~~~---~~~c~---------~c~~~~~~~~~- 114 (540)
T 2vl7_A 52 --KKVLIFTRTHSQLDSIYKNAKLL--GLKTGFLIGKSASCIYAQGDEEPD---EINCS---------KCRLKDKIKTI- 114 (540)
T ss_dssp --CEEEEEESCHHHHHHHHHHHGGG--TCCEEEC----------------------------------------------
T ss_pred --CCEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCCHHCCCCC---CCCCC---------CCCCHHCCCCC-
T ss_conf --93899928899999999999854--983798527765257801123654---55789---------88730004401-
Q ss_pred HHCCCCCC-CCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCC------CCCCCCEEEEECCCC
Q ss_conf 52999999-99883467630347898536787853068639993662124976540169------899884899947658
Q 001656 173 KNNPHLGD-EPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLG------VEWKNSILIFDEAHN 245 (1036)
Q Consensus 173 ~~~~~l~~-~~~dIedlv~~g~~~~~CPY~~sR~~~~~ADIIV~nY~yLld~~ir~~l~------i~~~~~IlIiDEAHN 245 (1036)
++ ...++|+ .+++..+.||||.+|+.+..|||||+||+|||++..++.++ +.+++.++|||||||
T Consensus 115 ------gd~~~~~~~~--~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHn 186 (540)
T 2vl7_A 115 ------EDKEPSKLIE--EFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHN 186 (540)
T ss_dssp --------------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGG
T ss_pred ------CCCCCHHHHH--HHHHHCCCCHHHHHHHHHHCCCEEEECHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEECCCC
T ss_conf ------3678189999--97465489908999987415999998827965888997607443333376788899975045
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCC
Q ss_conf 0789973303503988999999998752210001247898888991369999999999999998355463346877-996
Q 001656 246 LEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFT-KPG 324 (1036)
Q Consensus 246 Led~a~~a~S~~Ls~~~L~~~i~el~~~~~~~~~~r~~~~~~~~~~~~~~~L~~ll~~L~~~i~~l~~~~~~~~~~-~pg 324 (1036)
|++ +++++|.+++..++..+++++...... .+ . ....+..++..+.+.+...........+. .|.
T Consensus 187 l~~-a~~~~s~~ls~~~l~~~~~~l~~~~~~---~~-------~---~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 252 (540)
T 2vl7_A 187 LLE-ADKWFTRKISRKMLERALKEIEIVERL---NR-------I---DAKKVKDYINLLIDYMSKLIKDGRCHELSLMPL 252 (540)
T ss_dssp GGG-GGGGGCEEECHHHHHHHHHHHHHHHHT---TC-------C---CCHHHHHHHHHHHHHHHTSCCSSSEEEESCCCC
T ss_pred HHH-HHHHHCCCCCHHHHHHHHHHHHHHHHC---CH-------H---HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
T ss_conf 788-998746500799999999999998722---45-------4---599999999999999998616565012654254
Q ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCH
Q ss_conf 10899998301139999999999999999998844211100048999999999999984129887752899999725311
Q 001656 325 PYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANA 404 (1036)
Q Consensus 325 ~~i~e~l~~~~~~~~~~~~L~~~l~~i~~~L~~~~~~~~~~~~~~~L~~l~~~L~~i~~~~~~~~~~~y~v~v~~~~~~~ 404 (1036)
.....+..+...++. +.+... ... ....+..+.+++. . ....| |.
T Consensus 253 -----------~~~~~l~~l~~~~~~----~~~~~~-~~~--~~~~l~~~l~~~~----~----~~~~~--~~------- 297 (540)
T 2vl7_A 253 -----------PDRETNGELIVVTRA----YLNIDE-GPV--KKSSLKSLLKFVE----M----KGDLY--NC------- 297 (540)
T ss_dssp -----------CCHHHHHHHHHHHHH----HHTTCC-SSS--CCCHHHHHHHHHH----S----CCEEE--EE-------
T ss_pred -----------CCHHHHHHHHHHHHH----HHHHHC-CCC--CHHHHHHHHHHHH----H----CCCEE--EE-------
T ss_conf -----------237899999999999----997640-672--0899999999998----5----79789--88-------
Q ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 32213988844999985817878995603688499984579993879987299987222289767778638998147999
Q 001656 405 ADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPS 484 (1036)
Q Consensus 405 ~~~~~~~~~~~L~~~cl~Ps~~l~~ll~~~~~svILtSaTLsP~~~f~~~LGl~~~~~le~p~v~~~~qi~v~iv~~gp~ 484 (1036)
+ + .+.+.|.+....+.+... ...++|||||||+|...+ +-++...+..+ +...+++ ++
T Consensus 298 -----~--~-~l~~~P~~~~~~l~~~~~-~~~~~IltSATL~p~~~~----~~~f~~~~~~~--~g~~~~~---~~---- 355 (540)
T 2vl7_A 298 -----N--G-SLVKVPSDVNQLIEDALN-VKTFKVLMSGTLPESLTL----TNSYKIVVNES--YGRGEYY---YC---- 355 (540)
T ss_dssp -----T--T-EEEEECSCHHHHHHHHTC-CSSCEEEEESSCCTTCCC----TTEEEEECCCC---CCCEEE---EC----
T ss_pred -----C--C-EEEEEHHHHHHHHHHHCC-CCCCEEEECCCCCCCCCC----CHHCCCCHHHE--ECCCCCE---EC----
T ss_conf -----8--8-599805999999997148-667848971038987122----12308862422--3577612---31----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEECCCCC
Q ss_conf 76434444579979999999999999998759969999569898999999985037898235999985269853317999
Q 001656 485 GYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS 564 (1036)
Q Consensus 485 ~~~l~sty~~r~~~~y~~~L~~~I~~l~~~vpggvLVfFpSY~~Le~v~~~l~~~~~~~~~~l~~~i~~~k~ifiE~k~~ 564 (1036)
..++++|..|+. .| +.+++.|.+++..+|||+|||||||.+|+++.+.|+. +.+++|+++
T Consensus 356 -~~l~s~f~~r~~-~~-~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~----------------~~~~~q~~~- 415 (540)
T 2vl7_A 356 -PNVTSELRKRNS-NI-PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG----------------IPVIEENKK- 415 (540)
T ss_dssp -TTCCCCGGGHHH-HH-HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT----------------SCEEESTTT-
T ss_pred -CCCCCCCCCCCC-HH-HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCC----------------CCEEECCCC-
T ss_conf -555897556467-89-9999999999973899899991899999999999646----------------756866998-
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 97389999999983028999829999806974223357999--7429999389999999999999999999981578996
Q 001656 565 SLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADH--AGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGE 642 (1036)
Q Consensus 565 ~~~~~~l~~f~~~i~~~~~~gaVLlgV~rGk~sEGIDf~g~--~~R~VIIvGLPFp~p~Dp~v~lk~~yl~~~~~~~f~~ 642 (1036)
.+...+++.|+. +++|||+||+|+|||||||+|+ .+++|||+|||||+|.||.+++|.+|++++++++|
T Consensus 416 ~~~~~~l~~f~~-------~~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~-- 486 (540)
T 2vl7_A 416 TRHEEVLELMKT-------GKYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDE-- 486 (540)
T ss_dssp CCHHHHHHHHHT-------SCCEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCH--
T ss_pred CCHHHHHHHHHC-------CCEEEEEEECCCEECCEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCH--
T ss_conf 869999999736-------99189997057421561017974543379998899899999899999999998528972--
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHH
Q ss_conf 20000025786420699999999974177531479817999970477880236589
Q 001656 643 YKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQI 698 (1036)
Q Consensus 643 ~~~~~~~~l~g~~~y~~~A~rkv~QaiGRlIR~~~D~GaiiLlD~Rf~~~~y~~~l 698 (1036)
.++..+.++++++||+||+|||++|||+|+|+|.||.+.+|+..|
T Consensus 487 -----------~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R~~~~~yg~~l 531 (540)
T 2vl7_A 487 -----------DSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRYREYFADLGI 531 (540)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGGGGGGTTTTTC
T ss_pred -----------HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHCCC
T ss_conf -----------577899999999987187636788537999974443754232155
No 4
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=1.00 E-value=1 Score=141.41 Aligned_cols=364 Identities=15% Similarity=0.153 Sum_probs=202.3
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 49999-97899999999999997189548955689972699999999887430676645765555566887766887789
Q 001656 12 EFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSG 90 (1036)
Q Consensus 12 ~FPfe-pr~~Q~e~m~~V~~aL~~g~~~llEAPTGTGKTLa~L~~aLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1036)
.+.|. |++.|.+.+..+... .++++++.||||+|||++++.+++......+
T Consensus 22 ~~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-------------------------- 73 (395)
T 3pey_A 22 AMKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-------------------------- 73 (395)
T ss_dssp HTTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------------------------
T ss_pred HCCCCCCCHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHHCCCC--------------------------
T ss_conf 779999998999999999759--9971999878999579999999999831578--------------------------
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 99999699976888899999999982499972887078543234177876314564278699852067876751010888
Q 001656 91 DSKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVAD 170 (1036)
Q Consensus 91 ~~~~pkIiy~TRThsQl~Q~v~ELkkl~~~~k~~iLgsR~~lCin~~v~~l~~~~~~~~C~~L~k~~~~~~C~~~~~l~~ 170 (1036)
..++++|.+.|..+..|+.++++++...... ......++
T Consensus 74 --~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~------------------------------------~~~~~~~~--- 112 (395)
T 3pey_A 74 --ASPQAICLAPSRELARQTLEVVQEMGKFTKI------------------------------------TSQLIVPD--- 112 (395)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHTTTSCC------------------------------------CEEEESTT---
T ss_pred --CCCCEEEECCCHHHHHHHHHHHHHHHCCCCE------------------------------------EEEEEECC---
T ss_conf --9962899899889999999999998461671------------------------------------58999557---
Q ss_pred HHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 85529999999988346763034789853678785306863999366212497654016989988489994765807899
Q 001656 171 YMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGIC 250 (1036)
Q Consensus 171 ~~~~~~~l~~~~~dIedlv~~g~~~~~CPY~~sR~~~~~ADIIV~nY~yLld~~ir~~l~i~~~~~IlIiDEAHNLed~a 250 (1036)
. . .. .....++|+|+++..|++...+... ...+-.++||||||++.+..
T Consensus 113 ----~--~-----~~-------------------~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIiDEah~~~~~~ 161 (395)
T 3pey_A 113 ----S--F-----EK-------------------NKQINAQVIVGTPGTVLDLMRRKLM-QLQKIKIFVLDEADNMLDQQ 161 (395)
T ss_dssp ----S--S-----CT-------------------TSCBCCSEEEECHHHHHHHHHTTCB-CCTTCCEEEEETHHHHHHST
T ss_pred ----C--H-----HH-------------------HCCCCCCEEEECHHHHHHHHHCCCC-CCCCCCEEEEECHHHHCCCC
T ss_conf ----1--3-----33-------------------2048999999748999999975996-60469899998846640844
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 73303503988999999998752210001247898888991369999999999999998355463346877996108999
Q 001656 251 ADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYEL 330 (1036)
Q Consensus 251 ~~a~S~~Ls~~~L~~~i~el~~~~~~~~~~r~~~~~~~~~~~~~~~L~~ll~~L~~~i~~l~~~~~~~~~~~pg~~i~e~ 330 (1036)
.+ ... +.
T Consensus 162 ------------------------------------------~~---~~~--------------------------~~-- 168 (395)
T 3pey_A 162 ------------------------------------------GL---GDQ--------------------------CI-- 168 (395)
T ss_dssp ------------------------------------------TH---HHH--------------------------HH--
T ss_pred ------------------------------------------CC---HHH--------------------------HH--
T ss_conf ------------------------------------------53---999--------------------------99--
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHCC
Q ss_conf 98301139999999999999999998844211100048999999999999984129887752899999725311322139
Q 001656 331 LADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKG 410 (1036)
Q Consensus 331 l~~~~~~~~~~~~L~~~l~~i~~~L~~~~~~~~~~~~~~~L~~l~~~L~~i~~~~~~~~~~~y~v~v~~~~~~~~~~~~~ 410 (1036)
.+ ... ..
T Consensus 169 -------------------~~------------------------------~~~------------------------~~ 175 (395)
T 3pey_A 169 -------------------RV------------------------------KRF------------------------LP 175 (395)
T ss_dssp -------------------HH------------------------------HHT------------------------SC
T ss_pred -------------------HH------------------------------HHH------------------------CC
T ss_conf -------------------99------------------------------974------------------------88
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHHCCCC-CCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 8884499998581787899560368849998457999-387998729998-72222897677786389981479997643
Q 001656 411 KASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSP-MDSFAQELKLNF-PLRVENPHVITSKQIWAGIVPVGPSGYLL 488 (1036)
Q Consensus 411 ~~~~~L~~~cl~Ps~~l~~ll~~~~~svILtSaTLsP-~~~f~~~LGl~~-~~~le~p~v~~~~qi~v~iv~~gp~~~~l 488 (1036)
....+|++|||+.+ ...+...+.... .+..... ......+...++.
T Consensus 176 -----------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------- 223 (395)
T 3pey_A 176 -----------------------KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN-EVNVDAIKQLYMD-------- 223 (395)
T ss_dssp -----------------------TTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG-GCSCTTEEEEEEE--------
T ss_pred -----------------------CCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCC-CCCCCCCCEEEEE--------
T ss_conf -----------------------77489999954888999999986799728970455-5665430179997--------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEECCCCC-CC
Q ss_conf 444457997999999999999999875-9969999569898999999985037898235999985269853317999-97
Q 001656 489 NSSYRNRDSIEYKQELGNTIVNIARIV-PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS-SL 566 (1036)
Q Consensus 489 ~sty~~r~~~~y~~~L~~~I~~l~~~v-pggvLVfFpSY~~Le~v~~~l~~~~~~~~~~l~~~i~~~k~ifiE~k~~-~~ 566 (1036)
..... .....+..+.... .+.+|||+++....+.+.+.++.... ...++..+.. .+
T Consensus 224 ------~~~~~---~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-------------~~~~~~~~~~~~~ 281 (395)
T 3pey_A 224 ------CKNEA---DKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGH-------------EVSILHGDLQTQE 281 (395)
T ss_dssp ------CSSHH---HHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECTTSCHHH
T ss_pred ------CCCHH---HHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCC-------------CEEEECCCCCHHH
T ss_conf ------57567---7999999999724679779991878999999999986697-------------0899678899899
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 38999999998302899982999980697422335799974299993899999999999999999999815789962000
Q 001656 567 FPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKET 646 (1036)
Q Consensus 567 ~~~~l~~f~~~i~~~~~~gaVLlgV~rGk~sEGIDf~g~~~R~VIIvGLPFp~p~Dp~v~lk~~yl~~~~~~~f~~~~~~ 646 (1036)
...+++.|+. ++..||+++ ..+++|||+++ ++.||..++|.-...
T Consensus 282 r~~~~~~f~~------g~~~vlv~T--~~~~~Gidip~--~~~Vi~~~~p~~~~~------------------------- 326 (395)
T 3pey_A 282 RDRLIDDFRE------GRSKVLITT--NVLARGIDIPT--VSMVVNYDLPTLANG------------------------- 326 (395)
T ss_dssp HHHHHHHHHT------TSCCEEEEC--GGGSSSCCCTT--EEEEEESSCCBCTTS-------------------------
T ss_pred HHHHHHHHHC------CCCCEEEEC--CHHHCCCCCCC--CCEEEECCCCCCCCC-------------------------
T ss_conf 9999999977------999899987--75534787012--897997289987767-------------------------
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH-CCHHC--CCCHHHHHHHHHHHH
Q ss_conf 002578642069999999997417753147981799997047788023658976110-00120--487668999999999
Q 001656 647 KLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQ-PHIQC--YSKFGDVVYTLTRFF 723 (1036)
Q Consensus 647 ~~~~l~g~~~y~~~A~rkv~QaiGRlIR~~~D~GaiiLlD~Rf~~~~y~~~l~~wl~-~~~~~--~~~~~e~~~~L~~Ff 723 (1036)
+.. ...+.|.+||+-|...+--++++++.+-. ..+...+.+.+. ..+.. ...+.++...+.+.+
T Consensus 327 ---------~~s---~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (395)
T 3pey_A 327 ---------QAD---PATYIHRIGRTGRFGRKGVAISFVHDKNS-FNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVL 393 (395)
T ss_dssp ---------SBC---HHHHHHHHTTSSCTTCCEEEEEEECSHHH-HHHHHHHHHHTTSCCCEECCSSCHHHHHHHHHHHH
T ss_pred ---------CCC---HHHHHHHCCCCCCCCCCCEEEEEEECHHH-HHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHH
T ss_conf ---------789---77806745203169798569999815677-99999999972776100388178899999987762
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=1.00 E-value=1 Score=140.17 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=78.6
Q ss_pred HHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEECCCCC-CCHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999987-59969999569898999999985037898235999985269853317999-973899999999830289998
Q 001656 508 IVNIARI-VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS-SLFPLAIEDYMAKLKDTSTSG 585 (1036)
Q Consensus 508 I~~l~~~-vpggvLVfFpSY~~Le~v~~~l~~~~~~~~~~l~~~i~~~k~ifiE~k~~-~~~~~~l~~f~~~i~~~~~~g 585 (1036)
+..++.. ..+.+|||+++....+.+...++.... ...++..+.. .+...+++.|+. ++.
T Consensus 241 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~r~~~~~~f~~------~~~ 301 (391)
T 1xti_A 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF-------------PAIAIHRGMPQEERLSRYQQFKD------FQR 301 (391)
T ss_dssp HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTC-------------CEEEECTTSCHHHHHHHHHHHHT------TCC
T ss_pred HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCC-------------CEEEEECCCCHHHHHHHHHHHHC------CCC
T ss_conf 99999843788589991857899999999986799-------------67997589998999999999866------998
Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 29999806974223357999742999938999999999999999999998157899620000025786420699999999
Q 001656 586 AVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAV 665 (1036)
Q Consensus 586 aVLlgV~rGk~sEGIDf~g~~~R~VIIvGLPFp~p~Dp~v~lk~~yl~~~~~~~f~~~~~~~~~~l~g~~~y~~~A~rkv 665 (1036)
.||+++ ..+++|+|+++ ++.||..++|. + ...+
T Consensus 302 ~vlv~T--~~~~~Gidi~~--~~~Vi~~~~p~----s---------------------------------------~~~~ 334 (391)
T 1xti_A 302 RILVAT--NLFGRGMDIER--VNIAFNYDMPE----D---------------------------------------SDTY 334 (391)
T ss_dssp SEEEES--CCCSSCBCCTT--EEEEEESSCCS----S---------------------------------------HHHH
T ss_pred CEEEEC--CHHHCCCCCCC--CCEEEEECCCC----C---------------------------------------HHHH
T ss_conf 399988--73534787110--89899968999----9---------------------------------------8998
Q ss_pred HHHHCCCCCCCCCCEEEEEEEC
Q ss_conf 9741775314798179999704
Q 001656 666 NQAVGRVIRHRHDYGAIIFCDE 687 (1036)
Q Consensus 666 ~QaiGRlIR~~~D~GaiiLlD~ 687 (1036)
.|.+||+-|...+--++++++.
T Consensus 335 ~Qr~GR~~R~g~~g~~~~~~~~ 356 (391)
T 1xti_A 335 LHRVARAGRFGTKGLAITFVSD 356 (391)
T ss_dssp HHHHCBCSSSCCCCEEEEEECS
T ss_pred HHHCCCCCCCCCCEEEEEEECC
T ss_conf 8863445679996389999706
No 6
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=138.18 Aligned_cols=352 Identities=17% Similarity=0.158 Sum_probs=193.8
Q ss_pred ECCCCC-CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 049999-9789999999999999718954895568997269999999988743067664576555556688776688778
Q 001656 11 VEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQS 89 (1036)
Q Consensus 11 v~FPfe-pr~~Q~e~m~~V~~aL~~g~~~llEAPTGTGKTLa~L~~aLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1036)
..++|+ |++.|.+.+..+... .++.+++.||||+|||++++.|++........
T Consensus 37 ~~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~------------------------ 90 (579)
T 3sqw_A 37 TRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKF------------------------ 90 (579)
T ss_dssp HTTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT------------------------
T ss_pred HHCCCCCCCHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCC------------------------
T ss_conf 9779999999999999999805--99839998379867999999999999984133------------------------
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 99999969997688889999999998249997288707854323417787631456427869985206787675101088
Q 001656 90 GDSKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVA 169 (1036)
Q Consensus 90 ~~~~~pkIiy~TRThsQl~Q~v~ELkkl~~~~k~~iLgsR~~lCin~~v~~l~~~~~~~~C~~L~k~~~~~~C~~~~~l~ 169 (1036)
.....++++|.+.|..+..|+..+++++.. .. .+ +.. ...+..+++
T Consensus 91 ~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~-----------------~~---~~---------~~~---~~~~~~~gg-- 136 (579)
T 3sqw_A 91 DSQYMVKAVIVAPTRDLALQIEAEVKKIHD-----------------MN---YG---------LKK---YACVSLVGG-- 136 (579)
T ss_dssp SSTTSCCEEEECSSHHHHHHHHHHHHHHHH-----------------HC---GG---------GTT---SCEEEECTT--
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHHHH-----------------HC---CC---------CCC---EEEEEEECC--
T ss_conf 566897699982519999999999999985-----------------43---46---------666---379999899--
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHH
Q ss_conf 88552999999998834676303478985367878530686399936621249765401698998848999476580789
Q 001656 170 DYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGI 249 (1036)
Q Consensus 170 ~~~~~~~~l~~~~~dIedlv~~g~~~~~CPY~~sR~~~~~ADIIV~nY~yLld~~ir~~l~i~~~~~IlIiDEAHNLed~ 249 (1036)
. +..+. ..+.....++|||++...|++...+........-.++||||||.+.+.
T Consensus 137 -----------~--~~~~~-------------~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~ 190 (579)
T 3sqw_A 137 -----------T--DFRAA-------------MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI 190 (579)
T ss_dssp -----------S--CHHHH-------------HHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTST
T ss_pred -----------C--CHHHH-------------HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCC
T ss_conf -----------0--67999-------------999845999999989899999998455434133889999883776447
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 97330350398899999999875221000124789888899136999999999999999835546334687799610899
Q 001656 250 CADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYE 329 (1036)
Q Consensus 250 a~~a~S~~Ls~~~L~~~i~el~~~~~~~~~~r~~~~~~~~~~~~~~~L~~ll~~L~~~i~~l~~~~~~~~~~~pg~~i~e 329 (1036)
. ....+ ..++
T Consensus 191 g---------------------------------------f~~~~---~~i~---------------------------- 200 (579)
T 3sqw_A 191 G---------------------------------------FRDDL---ETIS---------------------------- 200 (579)
T ss_dssp T---------------------------------------THHHH---HHHH----------------------------
T ss_pred C---------------------------------------CHHHH---HHHH----------------------------
T ss_conf 8---------------------------------------79999---9999----------------------------
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHC
Q ss_conf 99830113999999999999999999884421110004899999999999998412988775289999972531132213
Q 001656 330 LLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLK 409 (1036)
Q Consensus 330 ~l~~~~~~~~~~~~L~~~l~~i~~~L~~~~~~~~~~~~~~~L~~l~~~L~~i~~~~~~~~~~~y~v~v~~~~~~~~~~~~ 409 (1036)
..+.. ..
T Consensus 201 -----------------------~~l~~--------------------------~~------------------------ 207 (579)
T 3sqw_A 201 -----------------------GILNE--------------------------KN------------------------ 207 (579)
T ss_dssp -----------------------HHHHH--------------------------HC------------------------
T ss_pred -----------------------HHHHH--------------------------HH------------------------
T ss_conf -----------------------87455--------------------------31------------------------
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHH-CCCCCCCCCCC---CCCCCCCEEEEECCCCCC
Q ss_conf 988844999985817878995603688499984579993-8799872-99987222289---767778638998147999
Q 001656 410 GKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPM-DSFAQEL-KLNFPLRVENP---HVITSKQIWAGIVPVGPS 484 (1036)
Q Consensus 410 ~~~~~~L~~~cl~Ps~~l~~ll~~~~~svILtSaTLsP~-~~f~~~L-Gl~~~~~le~p---~v~~~~qi~v~iv~~gp~ 484 (1036)
... . ....+|++|||+++. ..+...+ +-+..+.+... .......+...++..
T Consensus 208 ~~~-------------------~-~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--- 264 (579)
T 3sqw_A 208 SKS-------------------A-DNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS--- 264 (579)
T ss_dssp SSC-------------------T-TCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE---
T ss_pred CCC-------------------C-CCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEE---
T ss_conf 146-------------------5-67459999356886899999997699825999605766655403431599994---
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC-EECC
Q ss_conf 764344445799799999999999999987--5996999956989899999998503789823599998526985-3317
Q 001656 485 GYLLNSSYRNRDSIEYKQELGNTIVNIARI--VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKP-VVEP 561 (1036)
Q Consensus 485 ~~~l~sty~~r~~~~y~~~L~~~I~~l~~~--vpggvLVfFpSY~~Le~v~~~l~~~~~~~~~~l~~~i~~~k~i-fiE~ 561 (1036)
...... ...+...+...+.. .++.+|||+++....+.+...++.... ....+ .+..
T Consensus 265 ---------~~~~~~-~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-----------~~~~v~~~hg 323 (579)
T 3sqw_A 265 ---------EKFANS-IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-----------KDLPILEFHG 323 (579)
T ss_dssp ---------SSTTHH-HHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-----------TTSCEEEEST
T ss_pred ---------CCHHHH-HHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHC-----------CCCCEEEECC
T ss_conf ---------422655-9999999999986137898389988928999999999987524-----------7972798418
Q ss_pred CCC-CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999-9738999999998302899982999980697422335799974299993899999999999999999999815789
Q 001656 562 RQS-SLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQG 640 (1036)
Q Consensus 562 k~~-~~~~~~l~~f~~~i~~~~~~gaVLlgV~rGk~sEGIDf~g~~~R~VIIvGLPFp~p~Dp~v~lk~~yl~~~~~~~f 640 (1036)
+.. .+...+++.|+. ++..||+++ ..+++|||+++ ++.||..++|...
T Consensus 324 ~~~~~~R~~~~~~F~~------g~~~vLVaT--~~~~~GiDip~--v~~VI~~~~p~s~--------------------- 372 (579)
T 3sqw_A 324 KITQNKRTSLVKRFKK------DESGILVCT--DVGARGMDFPN--VHEVLQIGVPSEL--------------------- 372 (579)
T ss_dssp TSCHHHHHHHHHHHHH------CSSEEEEEC--GGGTSSCCCTT--CCEEEEESCCSST---------------------
T ss_pred CCCHHHHHHHHHHHHC------CCCEEEEEC--CHHHCCCCCCC--CCEEEECCCCCCH---------------------
T ss_conf 8999999999998635------887199981--44545887356--8789981899987---------------------
Q ss_pred CCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECC
Q ss_conf 962000002578642069999999997417753147981799997047
Q 001656 641 GEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDER 688 (1036)
Q Consensus 641 ~~~~~~~~~~l~g~~~y~~~A~rkv~QaiGRlIR~~~D~GaiiLlD~R 688 (1036)
..+.|.+||+-|...+--++++++.+
T Consensus 373 ----------------------~~y~Qr~GRagR~g~~g~~i~~~~~~ 398 (579)
T 3sqw_A 373 ----------------------ANYIHRIGRTARSGKEGSSVLFICKD 398 (579)
T ss_dssp ----------------------THHHHHHTTSSCTTCCEEEEEEEEGG
T ss_pred ----------------------HHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf ----------------------77653226445589973299997241
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=1.00 E-value=1 Score=133.87 Aligned_cols=135 Identities=21% Similarity=0.199 Sum_probs=90.0
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999-9978999999999999971895489556899726999999998874306766457655555668877668877899
Q 001656 13 FPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (1036)
Q Consensus 13 FPf-epr~~Q~e~m~~V~~aL~~g~~~llEAPTGTGKTLa~L~~aLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (1036)
++| +||+.|.+....+. +++++++.||||+|||++++.+++.+.....
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------------------------- 87 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------------------------- 87 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTC---------------------------
T ss_pred CCCCCCCHHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHHHHCCC---------------------------
T ss_conf 599999889999999983----7997899889997399999999999864357---------------------------
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 99996999768888999999999824999--7288707854323417787631456427869985206787675101088
Q 001656 92 SKLPTILYTSRTHSQLRQVIQELKTSNYR--PKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVA 169 (1036)
Q Consensus 92 ~~~pkIiy~TRThsQl~Q~v~ELkkl~~~--~k~~iLgsR~~lCin~~v~~l~~~~~~~~C~~L~k~~~~~~C~~~~~l~ 169 (1036)
..++++|.+.|..+..|+.+++++.... .+...+.+. .
T Consensus 88 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~--------------~------------------------- 127 (394)
T 1fuu_A 88 -KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG--------------T------------------------- 127 (394)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSS--------------C-------------------------
T ss_pred -CCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECC--------------C-------------------------
T ss_conf -898789984989999999999999855378149999678--------------8-------------------------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHH
Q ss_conf 8855299999999883467630347898536787853068639993662124976540169899884899947658078
Q 001656 170 DYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEG 248 (1036)
Q Consensus 170 ~~~~~~~~l~~~~~dIedlv~~g~~~~~CPY~~sR~~~~~ADIIV~nY~yLld~~ir~~l~i~~~~~IlIiDEAHNLed 248 (1036)
.. .........++|+|+++..|++...+..+ ...+-.++||||||.+.+
T Consensus 128 --------------~~---------------~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 128 --------------SF---------------VEDAEGLRDAQIVVGTPGRVFDNIQRRRF-RTDKIKMFILDEADEMLS 176 (394)
T ss_dssp --------------CH---------------HHHHHHHHHCSEEEECHHHHHHHHHTTSS-CCTTCCEEEEETHHHHHH
T ss_pred --------------CH---------------HHHHHHCCCCCEEEECHHHHHHHHHHCCC-CHHHCCEEEEECHHHHHC
T ss_conf --------------66---------------88896467999999787999999981881-561375999978678657
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=1.00 E-value=1 Score=133.10 Aligned_cols=134 Identities=23% Similarity=0.166 Sum_probs=89.0
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999-978999999999999971895489556899726999999998874306766457655555668877668877899
Q 001656 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (1036)
Q Consensus 13 FPfe-pr~~Q~e~m~~V~~aL~~g~~~llEAPTGTGKTLa~L~~aLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (1036)
+.|+ ||+.|.+.+..+. +++++++.||||+|||++++.+++.......
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~--------------------------- 87 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKL--------------------------- 87 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTS---------------------------
T ss_pred CCCCCCCHHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHHHHHCC---------------------------
T ss_conf 799999899999988882----6997899889995799999999999874045---------------------------
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 9999699976888899999999982499--97288707854323417787631456427869985206787675101088
Q 001656 92 SKLPTILYTSRTHSQLRQVIQELKTSNY--RPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVA 169 (1036)
Q Consensus 92 ~~~pkIiy~TRThsQl~Q~v~ELkkl~~--~~k~~iLgsR~~lCin~~v~~l~~~~~~~~C~~L~k~~~~~~C~~~~~l~ 169 (1036)
..++++|.+.|..+..|+.++++++.. ..+...+.+. .
T Consensus 88 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~--------------~------------------------- 127 (400)
T 1s2m_A 88 -NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGG--------------T------------------------- 127 (400)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSS--------------S-------------------------
T ss_pred -CCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECC--------------C-------------------------
T ss_conf -896489986999999999999999853069149999689--------------6-------------------------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCCEEEEECCCCH
Q ss_conf 88552999999998834676303478985367878530686399936621249765401698998848999476580
Q 001656 170 DYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNL 246 (1036)
Q Consensus 170 ~~~~~~~~l~~~~~dIedlv~~g~~~~~CPY~~sR~~~~~ADIIV~nY~yLld~~ir~~l~i~~~~~IlIiDEAHNL 246 (1036)
...+ ........++|+|+++..|++...+... ...+-.++||||||.+
T Consensus 128 --------------~~~~--------------~~~~~~~~~~Ivv~T~~~l~~~~~~~~~-~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 128 --------------NLRD--------------DILRLNETVHILVGTPGRVLDLASRKVA-DLSDCSLFIMDEADKM 175 (400)
T ss_dssp --------------CHHH--------------HHHHTTSCCSEEEECHHHHHHHHHTTCS-CCTTCCEEEEESHHHH
T ss_pred --------------CHHH--------------HHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCCCEEEEECCHHH
T ss_conf --------------6588--------------9997368998999766999999983896-5165788999383586
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=1.00 E-value=1 Score=132.89 Aligned_cols=350 Identities=17% Similarity=0.158 Sum_probs=192.0
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 49999-97899999999999997189548955689972699999999887430676645765555566887766887789
Q 001656 12 EFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSG 90 (1036)
Q Consensus 12 ~FPfe-pr~~Q~e~m~~V~~aL~~g~~~llEAPTGTGKTLa~L~~aLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1036)
.++|+ |++.|.+.+..+.. ..++++++.||||+|||++|+.|++.+...... .
T Consensus 89 ~~g~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~------------------------~ 142 (563)
T 3i5x_A 89 RMEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF------------------------D 142 (563)
T ss_dssp TTCCSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT------------------------S
T ss_pred HCCCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC------------------------C
T ss_conf 77999999999999999966--799729998789997429999999999874234------------------------6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 99999699976888899999999982499972887078543234177876314564278699852067876751010888
Q 001656 91 DSKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVAD 170 (1036)
Q Consensus 91 ~~~~pkIiy~TRThsQl~Q~v~ELkkl~~~~k~~iLgsR~~lCin~~v~~l~~~~~~~~C~~L~k~~~~~~C~~~~~l~~ 170 (1036)
....++++|.+.|..+..|+..+++++.. .. .+ +.. ...+..+++
T Consensus 143 ~~~~~~~lil~Ptr~La~Q~~~~~~~~~~-----------------~~---~~---------~~~---~~~~~~~g~--- 187 (563)
T 3i5x_A 143 SQYMVKAVIVAPTRDLALQIEAEVKKIHD-----------------MN---YG---------LKK---YACVSLVGG--- 187 (563)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHH-----------------HC---GG---------GTT---SCEEEECTT---
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHH-----------------HC---CC---------CCC---EEEEEEECC---
T ss_conf 66770499982849999999999999974-----------------23---56---------676---049999899---
Q ss_pred HHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 85529999999988346763034789853678785306863999366212497654016989988489994765807899
Q 001656 171 YMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGIC 250 (1036)
Q Consensus 171 ~~~~~~~l~~~~~dIedlv~~g~~~~~CPY~~sR~~~~~ADIIV~nY~yLld~~ir~~l~i~~~~~IlIiDEAHNLed~a 250 (1036)
. +..+. ..+.....++|||+++..|++...+........-.++||||||.+.+..
T Consensus 188 ----------~--~~~~~-------------~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~ 242 (563)
T 3i5x_A 188 ----------T--DFRAA-------------MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG 242 (563)
T ss_dssp ----------S--CHHHH-------------HHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT
T ss_pred ----------C--CHHHH-------------HHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCCC
T ss_conf ----------0--77999-------------9997468999899892999999983441112551099983778775055
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 73303503988999999998752210001247898888991369999999999999998355463346877996108999
Q 001656 251 ADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYEL 330 (1036)
Q Consensus 251 ~~a~S~~Ls~~~L~~~i~el~~~~~~~~~~r~~~~~~~~~~~~~~~L~~ll~~L~~~i~~l~~~~~~~~~~~pg~~i~e~ 330 (1036)
....+ ..++ .
T Consensus 243 ---------------------------------------f~~~~---~~i~---------------------------~- 252 (563)
T 3i5x_A 243 ---------------------------------------FRDDL---ETIS---------------------------G- 252 (563)
T ss_dssp ---------------------------------------THHHH---HHHH---------------------------H-
T ss_pred ---------------------------------------HHHHH---HHHH---------------------------H-
T ss_conf ---------------------------------------09999---9999---------------------------8-
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHCC
Q ss_conf 98301139999999999999999998844211100048999999999999984129887752899999725311322139
Q 001656 331 LADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKG 410 (1036)
Q Consensus 331 l~~~~~~~~~~~~L~~~l~~i~~~L~~~~~~~~~~~~~~~L~~l~~~L~~i~~~~~~~~~~~y~v~v~~~~~~~~~~~~~ 410 (1036)
.+.. .. .
T Consensus 253 -----------------------~l~~--------------------------~~------------------------~ 259 (563)
T 3i5x_A 253 -----------------------ILNE--------------------------KN------------------------S 259 (563)
T ss_dssp -----------------------HHHH--------------------------HC------------------------S
T ss_pred -----------------------HHHH--------------------------CC------------------------C
T ss_conf -----------------------6111--------------------------03------------------------5
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHCCC-CCCCCCC---CCCCCCCCEEEEECCCCCCC
Q ss_conf 88844999985817878995603688499984579993-8799872999-8722228---97677786389981479997
Q 001656 411 KASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPM-DSFAQELKLN-FPLRVEN---PHVITSKQIWAGIVPVGPSG 485 (1036)
Q Consensus 411 ~~~~~L~~~cl~Ps~~l~~ll~~~~~svILtSaTLsP~-~~f~~~LGl~-~~~~le~---p~v~~~~qi~v~iv~~gp~~ 485 (1036)
... ....+|++|||+.+. ..+...+.-. ..+.+.. ........+...++..
T Consensus 260 ~~~--------------------~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 315 (563)
T 3i5x_A 260 KSA--------------------DNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS---- 315 (563)
T ss_dssp SCT--------------------TCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE----
T ss_pred CCC--------------------CCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEC----
T ss_conf 676--------------------67559999816887899999986388761787415777755210375489987----
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC-EECCC
Q ss_conf 64344445799799999999999999987--5996999956989899999998503789823599998526985-33179
Q 001656 486 YLLNSSYRNRDSIEYKQELGNTIVNIARI--VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKP-VVEPR 562 (1036)
Q Consensus 486 ~~l~sty~~r~~~~y~~~L~~~I~~l~~~--vpggvLVfFpSY~~Le~v~~~l~~~~~~~~~~l~~~i~~~k~i-fiE~k 562 (1036)
....... ..+...+...+.. ..+.+|||++|....+.+...++.... ....+ .+..+
T Consensus 316 --------~~~~~~~-~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-----------~~~~v~~~h~~ 375 (563)
T 3i5x_A 316 --------EKFANSI-FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-----------KDLPILEFHGK 375 (563)
T ss_dssp --------SSTTHHH-HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-----------TTSCEEEESTT
T ss_pred --------CHHHHHH-HHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCC-----------CCCEEEEECCC
T ss_conf --------2267669-999999999986137887289994817999999999987424-----------79608982588
Q ss_pred CC-CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99-97389999999983028999829999806974223357999742999938999999999999999999998157899
Q 001656 563 QS-SLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGG 641 (1036)
Q Consensus 563 ~~-~~~~~~l~~f~~~i~~~~~~gaVLlgV~rGk~sEGIDf~g~~~R~VIIvGLPFp~p~Dp~v~lk~~yl~~~~~~~f~ 641 (1036)
-. .+...+++.|+. ++..||+++ ..+++|||+++ ++.||..++|...
T Consensus 376 ~~~~~R~~~~~~f~~------g~~~vLvaT--~~~~~GiDip~--v~~VI~~~~p~s~---------------------- 423 (563)
T 3i5x_A 376 ITQNKRTSLVKRFKK------DESGILVCT--DVGARGMDFPN--VHEVLQIGVPSEL---------------------- 423 (563)
T ss_dssp SCHHHHHHHHHHHHH------CSSEEEEEC--GGGTSSCCCTT--CCEEEEESCCSST----------------------
T ss_pred CCHHHHHHHHHHHHC------CCCCEEEEC--CHHHCCCCCCC--CCEEEEECCCCCH----------------------
T ss_conf 999999999999866------899889983--66646898426--7779997999964----------------------
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC
Q ss_conf 6200000257864206999999999741775314798179999704
Q 001656 642 EYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDE 687 (1036)
Q Consensus 642 ~~~~~~~~~l~g~~~y~~~A~rkv~QaiGRlIR~~~D~GaiiLlD~ 687 (1036)
..+.|.+||+-|...+--+++++..
T Consensus 424 ---------------------~~y~Qr~GRagR~g~~g~~i~~~~~ 448 (563)
T 3i5x_A 424 ---------------------ANYIHRIGRTARSGKEGSSVLFICK 448 (563)
T ss_dssp ---------------------THHHHHHTTSSCTTCCEEEEEEEEG
T ss_pred ---------------------HHHHHHCCCCCCCCCCCEEEEEECH
T ss_conf ---------------------2464642723569998539999750
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=131.95 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=86.2
Q ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEECCCCC-CCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 999998759969999569898999999985037898235999985269853317999-9738999999998302899982
Q 001656 508 IVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS-SLFPLAIEDYMAKLKDTSTSGA 586 (1036)
Q Consensus 508 I~~l~~~vpggvLVfFpSY~~Le~v~~~l~~~~~~~~~~l~~~i~~~k~ifiE~k~~-~~~~~~l~~f~~~i~~~~~~ga 586 (1036)
+..++...++.+|||+++....+.+.+.++.... +...+..+.. .+...+++.|+. ++..
T Consensus 230 l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~r~~~~~~f~~------~~~~ 290 (367)
T 1hv8_A 230 LCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF-------------KAGAIHGDLSQSQREKVIRLFKQ------KKIR 290 (367)
T ss_dssp HHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC-------------CEEEECSSSCHHHHHHHHHHHHT------TSSS
T ss_pred HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCC-------------CEEEEECCCCHHHHHHHHHHHHC------CCCE
T ss_conf 9999815898479997879999999999996598-------------76996199999999999999976------9980
Q ss_pred EEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99998069742233579997429999389999999999999999999981578996200000257864206999999999
Q 001656 587 VFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVN 666 (1036)
Q Consensus 587 VLlgV~rGk~sEGIDf~g~~~R~VIIvGLPFp~p~Dp~v~lk~~yl~~~~~~~f~~~~~~~~~~l~g~~~y~~~A~rkv~ 666 (1036)
||+++ ..+++|+|+++ ++.||..+.|.. ...+.
T Consensus 291 vlv~T--~~~~~Gid~~~--~~~Vi~~~~~~s-------------------------------------------~~~~~ 323 (367)
T 1hv8_A 291 ILIAT--DVMSRGIDVND--LNCVINYHLPQN-------------------------------------------PESYM 323 (367)
T ss_dssp EEEEC--TTHHHHCCCSC--CSEEEESSCCSC-------------------------------------------HHHHH
T ss_pred EEEEC--CHHHCCCCCCC--CCEEEEECCCCC-------------------------------------------HHHHH
T ss_conf 99987--74435777000--898999639999-------------------------------------------78855
Q ss_pred HHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 74177531479817999970477880236589761100
Q 001656 667 QAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQP 704 (1036)
Q Consensus 667 QaiGRlIR~~~D~GaiiLlD~Rf~~~~y~~~l~~wl~~ 704 (1036)
|.+||+-|...+--++++++.. ....-..+.+++..
T Consensus 324 Q~~GR~~R~g~~g~~~~~~~~~--~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 324 HRIGRTGRAGKKGKAISIINRR--EYKKLRYIERAMKL 359 (367)
T ss_dssp HHSTTTCCSSSCCEEEEEECTT--SHHHHHHHHHHHTC
T ss_pred HCCCCCCCCCCCCEEEEEECHH--HHHHHHHHHHHHCC
T ss_conf 4166112599961799997579--99999999998488
Done!