BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001657
(1036 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 285 bits (730), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 168/366 (45%), Positives = 225/366 (61%), Gaps = 33/366 (9%)
Query: 4 ASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSS 62
+E V+VA+ VRPL+ E G + C+ V G +V +G F F HV +
Sbjct: 7 GAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGF-HVVLAEDAGQE 65
Query: 63 AMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMG----TGLREGFQTGLIPQVMNAL 118
A++ CV PL++ F+G+NATV AYGQTGSGKTYTMG L E Q G++P+ M
Sbjct: 66 AVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQ-GIVPRAMAEA 124
Query: 119 FNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIR 178
F I+ ++ +HVS++E+ KEE RDLL+ V + R IQ+R
Sbjct: 125 FKLIDE-NDLLDCLVHVSYLEVYKEEFRDLLE----------------VGTASRD-IQLR 166
Query: 179 ESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238
E G + L G EV V L E+ + LE G+ +R TG+T++N+ SSRSH +FT+TLEQ
Sbjct: 167 EDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRG 226
Query: 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALG 298
+ S P + +K H VDLAGSER +TGS G RLKE I IN LLALG
Sbjct: 227 RAPSRLP------RPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALG 280
Query: 299 NVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLK 358
NVISALGD ++R G H+PYRDSK+TR+L+DSLGGN+KTVMIAC+SP+ + +E+LNTL
Sbjct: 281 NVISALGDPQRR--GSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLN 338
Query: 359 YANRAR 364
YA+RA+
Sbjct: 339 YASRAQ 344
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 275 bits (704), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 164/366 (44%), Positives = 223/366 (60%), Gaps = 33/366 (9%)
Query: 4 ASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSS 62
+E V+VA+ VRPL+ E G + C+ V G +V +G F F HV +
Sbjct: 7 GAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGF-HVVLAEDAGQE 65
Query: 63 AMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMG----TGLREGFQTGLIPQVMNAL 118
A++ CV PL++ F+G+NATV AYGQTGSGKTYTMG L E Q G++P+ M
Sbjct: 66 AVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQ-GIVPRAMAEA 124
Query: 119 FNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIR 178
F I+ ++ +HVS++E+ KEE RDLL+ V + R IQ+R
Sbjct: 125 FKLIDE-NDLLDCLVHVSYLEVYKEEFRDLLE----------------VGTASR-DIQLR 166
Query: 179 ESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238
E G + L G EV V L E+ + LE G+ +R TG+T++N+ SSRSH +FT+TL+Q
Sbjct: 167 EDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRG 226
Query: 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALG 298
+ S P + +K H VDLAGSER +TGS G KE I IN LLALG
Sbjct: 227 RAPSRLP------RPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALG 280
Query: 299 NVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLK 358
NVISALGD ++R G ++PYRDSK+TR+L+DSLGGN+KTVMIAC+SP+ + +E+LNTL
Sbjct: 281 NVISALGDPQRR--GSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLN 338
Query: 359 YANRAR 364
YA+RA+
Sbjct: 339 YASRAQ 344
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 260 bits (665), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 218/377 (57%), Gaps = 46/377 (12%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI----GT-----HSFTFDHVYGNGGS 59
SV+V V RP+ G E+A + V V QV + GT +FTFD VY + +
Sbjct: 22 SVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVY-DWNA 80
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR-EGFQTGLIPQVMNAL 118
++ E PLVD + QG+N T+ AYGQTG+GKTYTM G+R + + G+IP + +
Sbjct: 81 KQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM-EGIRGDPEKRGVIPNSFDHI 139
Query: 119 FNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIR 178
F I ++Q ++ + S++EI +EE+RDLL ++++
Sbjct: 140 FTHISRSQNQ-QYLVRASYLEIYQEEIRDLLSKDQTKR------------------LELK 180
Query: 179 ESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238
E + + + + +++E+ + G+ +R+ G+TNMN SSRSHAIF IT+E
Sbjct: 181 ERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIE--- 237
Query: 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALG 298
+ G D + KL+LVDLAGSER +TG+ G RLKE IN L ALG
Sbjct: 238 -----CSEVGL---DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALG 289
Query: 299 NVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLK 358
NVISAL D K H+PYRDSKLTRLLQDSLGGN+KTVM+A + PA N EE+L TL+
Sbjct: 290 NVISALVDGKS----THIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLR 345
Query: 359 YANRARNIQNKPVVNRD 375
YANRA+NI+NKP VN D
Sbjct: 346 YANRAKNIKNKPRVNED 362
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 216/390 (55%), Gaps = 42/390 (10%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQ--VQIGTHSFTFDHVYGNGGSPSSAMFG 66
S+KV RPL E G K V + + + I + FD V+ S ++
Sbjct: 12 SIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNAS-QEKVYN 70
Query: 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR 126
E +V + GYN T+ AYGQT SGKT+TM + + + G+IP+++N +FN I +
Sbjct: 71 EAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAME 130
Query: 127 HQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIRESSNGVIT 186
+EF + VS+ EI +++RDLLD KV++S + E N V
Sbjct: 131 VNLEFHIKVSYYEIYMDKIRDLLD-------------VSKVNLS------VHEDKNRVPY 171
Query: 187 LAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPD 246
+ G+TE V++ +++ +E+G +R TNMN SSRSH++F I ++Q
Sbjct: 172 VKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ---------- 221
Query: 247 NGTPDEDM-DEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305
E++ +++ KL+LVDLAGSE+ +TG++G L E +IN+ L ALGNVISAL
Sbjct: 222 -----ENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALA 276
Query: 306 DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARN 365
D K H+PYRDSKLTR+LQ+SLGGN++T ++ C SPA N E+ +TL + RA+
Sbjct: 277 DGNK----THIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKT 332
Query: 366 IQNKPVVNRDLISSDMQKLRQQLKYLQAEL 395
++N VN +L + + ++ ++ K A L
Sbjct: 333 VKNVVCVNEELTAEEWKRRYEKEKEKNARL 362
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 236 bits (603), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 202/370 (54%), Gaps = 42/370 (11%)
Query: 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGE 67
C++KV RPL E +G K +A G V I + + FD V+ + S ++ +
Sbjct: 7 CNIKVMCRFRPLNESEVNRGDKY-IAKFQGEDTVVIASKPYAFDRVFQSSTS-QEQVYND 64
Query: 68 CVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH 127
C +V + +GYN T+ AYGQT SGKT+TM L + G+IP+++ +FN I ++
Sbjct: 65 CAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE 124
Query: 128 QMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIRESSNGVITL 187
+EF + VS+ EI +++RDLLD + + + E N V +
Sbjct: 125 NLEFHIKVSYFEIYLDKIRDLLDV-------------------SKTNLSVHEDKNRVPYV 165
Query: 188 AGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDN 247
G TE V + E+ +++G +R TNMN SSRSH+IF I ++Q
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ----------- 214
Query: 248 GTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDE 307
+ E+ KL+LVDLAGSE+ +TG++G L E +IN+ L ALGNVISAL
Sbjct: 215 ---ENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALA-- 269
Query: 308 KKRREG-VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366
EG +VPYRDSK+TR+LQDSLGGN +T ++ C SP+ N E+ +TL + RA+ I
Sbjct: 270 ----EGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Query: 367 QNKPVVNRDL 376
+N VN +L
Sbjct: 326 KNTVCVNVEL 335
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 235 bits (600), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 201/370 (54%), Gaps = 42/370 (11%)
Query: 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGE 67
C++KV RPL E +G K VA G V I + + FD V+ + S ++ +
Sbjct: 7 CNIKVMCRFRPLNESEVNRGDKY-VAKFQGEDTVMIASKPYAFDRVFQSSTS-QEQVYND 64
Query: 68 CVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH 127
C +V + +GYN T+ AYGQT SGK +TM L + G+IP+++ +FN I ++
Sbjct: 65 CAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE 124
Query: 128 QMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIRESSNGVITL 187
+EF + VS+ EI +++RDLLD + + + E N V +
Sbjct: 125 NLEFHIKVSYFEIYLDKIRDLLDV-------------------SKTNLSVHEDKNRVPYV 165
Query: 188 AGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDN 247
G TE V + E+ +++G +R TNMN SSRSH+IF I ++Q
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ----------- 214
Query: 248 GTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDE 307
+ E+ KL+LVDLAGSE+ +TG++G L E +IN+ L ALGNVISAL
Sbjct: 215 ---ENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALA-- 269
Query: 308 KKRREG-VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366
EG +VPYRDSK+TR+LQDSLGGN +T ++ C SP+ N E+ +TL + RA+ I
Sbjct: 270 ----EGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Query: 367 QNKPVVNRDL 376
+N VN +L
Sbjct: 326 KNTVCVNVEL 335
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 211/400 (52%), Gaps = 68/400 (17%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVA-------VTHGNPQVQIG--THSFTFDHVYGNGGS 59
++KV RPL E A G ++ + VT NP+ G +FTFD VY + S
Sbjct: 22 ALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVY-DASS 80
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALF 119
+ ++ E V PL+D + QG+N TV AYGQTG+GKTYTM E G+IP +F
Sbjct: 81 KQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIF 140
Query: 120 NKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIRE 179
I ++Q ++ + S++EI +EE+RDLL GK ++++E
Sbjct: 141 THISRSQNQ-QYLVRASYLEIYQEEIRDLLSK-----------EPGKR-------LELKE 181
Query: 180 SSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239
+ + + + ++E+ + G+ +RA GST+MN SSRSHAIF IT+E +
Sbjct: 182 NPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSER 241
Query: 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGL----------------- 282
D + KL+LVDLAGSER + G +
Sbjct: 242 -----------GSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGS 290
Query: 283 -------RLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNS 335
R KE IN L ALGNVI+AL + H+PYRDSKLTRLLQDSLGGN+
Sbjct: 291 GGGAGGERPKEASKINLSLSALGNVIAALAGNRS----THIPYRDSKLTRLLQDSLGGNA 346
Query: 336 KTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375
KT+M+A + PA + +ESL+TL++ANRA+NI+NKP VN D
Sbjct: 347 KTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPRVNED 386
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 222/389 (57%), Gaps = 58/389 (14%)
Query: 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHS--------FTFDHVYGNGG 58
N +++V V VRPL ER E V V P+ + H+ FTFD +G
Sbjct: 22 NQNIQVYVRVRPLNSRERCIRSAEVVDVV--GPREVVTRHTLDSKLTKKFTFDRSFG-PE 78
Query: 59 SPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM--------GTGLREGFQTGL 110
S ++ V+PL++ + GYN TV AYGQTG+GKT+TM + + G+
Sbjct: 79 SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGI 138
Query: 111 IPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
IP+ ++ LF+++ + ++E+ + +S++E+ EE+ DLL S
Sbjct: 139 IPRALSHLFDELRMM--EVEYTMRISYLELYNEELCDLL------------------STD 178
Query: 171 GRPPIQIRESSN--GVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHA 228
I+I + S G + + G E+ V++ ++ LE+G R T +T MN QSSRSH
Sbjct: 179 DTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHT 238
Query: 229 IFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSD-GLRLKEG 287
+F+I + +R +NG EDM + KL+LVDLAGSE + G++ G+R++E
Sbjct: 239 VFSIVV-HIR-------ENGIEGEDMLK---IGKLNLVDLAGSENVSKAGNEKGIRVRET 287
Query: 288 IHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPAD 347
++IN+ LL LG VI+AL D HVPYR+SKLTRLLQ+SLGG +KT +IA ISP
Sbjct: 288 VNINQSLLTLGRVITALVDRAP-----HVPYRESKLTRLLQESLGGRTKTSIIATISPGH 342
Query: 348 INAEESLNTLKYANRARNIQNKPVVNRDL 376
+ EE+L+TL+YA+RA+NIQNKP VN+ L
Sbjct: 343 KDIEETLSTLEYAHRAKNIQNKPEVNQKL 371
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 229 bits (583), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 196/360 (54%), Gaps = 42/360 (11%)
Query: 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGE 67
C++KV RPL E +G K +A G V I + + FD V+ + S ++ +
Sbjct: 7 CNIKVMCRFRPLNESEVNRGDKY-IAKFQGEDTVVIASKPYAFDRVFQSSTS-QEQVYND 64
Query: 68 CVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH 127
C +V + +GYN T+ AYGQT SGKT+TM L + G+IP+++ +FN I ++
Sbjct: 65 CAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE 124
Query: 128 QMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIRESSNGVITL 187
+EF + VS+ EI +++RDLLD + + + E N V +
Sbjct: 125 NLEFHIKVSYFEIYLDKIRDLLDV-------------------SKTNLSVHEDKNRVPYV 165
Query: 188 AGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDN 247
G TE V + E+ +++G +R TNMN SSRSH+IF I ++Q
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ----------- 214
Query: 248 GTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDE 307
+ E+ KL+LVDLAGSE+ +TG++G L E +IN+ L ALGNVISAL
Sbjct: 215 ---ENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALA-- 269
Query: 308 KKRREG-VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366
EG +VPYRDSK+TR+LQDSLGGN +T ++ C SP+ N E+ +TL + RA+ I
Sbjct: 270 ----EGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 229 bits (583), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 201/344 (58%), Gaps = 39/344 (11%)
Query: 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM-GTGLREG 105
SFTFD V+ + S +F + P VD + GYN TV AYGQTG+GK+YTM GT + +
Sbjct: 48 SFTFDRVF-DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDP 106
Query: 106 FQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAG 165
G+IP+++ +F I + +E+ + VS++EI E +RDLL
Sbjct: 107 DGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDN---------- 156
Query: 166 KVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSR 225
+ + E N + + G E+ V+++QE+ + +G +RA +TNMN +SSR
Sbjct: 157 ---------LPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSR 207
Query: 226 SHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLK 285
SH+IF IT+ Q + + + S +G +L LVDLAGSE+ +TG+ G L+
Sbjct: 208 SHSIFVITITQ-KNVETGSAKSG-------------QLFLVDLAGSEKVGKTGASGQTLE 253
Query: 286 EGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISP 345
E IN+ L ALG VI+AL D K HVPYRDSKLTR+LQ+SLGGNS+T +I SP
Sbjct: 254 EAKKINKSLSALGMVINALTDGKSS----HVPYRDSKLTRILQESLGGNSRTTLIINCSP 309
Query: 346 ADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLK 389
+ N E+L+TL++ RA++I+NK VN +L ++++++ + K
Sbjct: 310 SSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQMLAKAK 353
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 144/382 (37%), Positives = 204/382 (53%), Gaps = 57/382 (14%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT--------------HSFTFDHVY 54
++KV V RPL E + + + + QV + +FTFD VY
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 55 GNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQV 114
+ S + +F PL+D + +G+N+T+ AYGQTG+GKT+TMG G +E + G IP
Sbjct: 65 -DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMG-GNKE--EPGAIPNS 120
Query: 115 MNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPP 174
LF+ I + F + S++E+ EE+RDL I
Sbjct: 121 FKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDL--------------------IKNNTK 160
Query: 175 IQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234
+ ++E I + G + V T E++A +++G +R +T MN+ SSRSH+IF + +
Sbjct: 161 LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRI 220
Query: 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGL 294
E + + E KL+LVDLAGSER +TG+ G L EG IN L
Sbjct: 221 ECSEVIEN------------KEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSL 268
Query: 295 LALGNVISALGDEKKRREG-VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEES 353
ALG VIS L EG H+PYRDSKLTRLLQDSLGGNSKT+M A ISPA N +E+
Sbjct: 269 SALGLVISKL------VEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDET 322
Query: 354 LNTLKYANRARNIQNKPVVNRD 375
++TL+YA+RA+ I+NKP +N D
Sbjct: 323 MSTLRYADRAKQIKNKPRINED 344
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 219/393 (55%), Gaps = 52/393 (13%)
Query: 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHG------NP-QVQIGTHSFTFDHVYGNGGSP 60
SVKVAV VRP E ++ K C+ G NP Q + SF+FD+ Y + SP
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSK-CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSP 78
Query: 61 SSA-------MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQ 113
++ + ++ F+GYN + AYGQTG+GK+YTM G +E Q G+IPQ
Sbjct: 79 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM-MGKQEKDQQGIIPQ 137
Query: 114 VMNALFNKI-ETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGR 172
+ LF++I +T M + + VS++EI E VRDLL+ +
Sbjct: 138 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------------------NK 179
Query: 173 PPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232
+++RE + +++AV + ++ ++ G+ +R +TNMN SSRSHA+F I
Sbjct: 180 GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI 239
Query: 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINR 292
Q R H + T +K+ LVDLAGSERA TG+ G RLKEG +IN+
Sbjct: 240 IFTQKR--HDAETNITTEK--------VSKISLVDLAGSERADSTGAKGTRLKEGANINK 289
Query: 293 GLLALGNVISALGD-------EKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISP 345
L LG VISAL + KK+++ +PYRDS LT LL+++LGGNS+T M+A +SP
Sbjct: 290 SLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSP 349
Query: 346 ADINAEESLNTLKYANRARNIQNKPVVNRDLIS 378
ADIN +E+L+TL+YA+RA+ I+N VN +L +
Sbjct: 350 ADINYDETLSTLRYADRAKQIRNTVSVNLELTA 382
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 216/387 (55%), Gaps = 52/387 (13%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHG------NP-QVQIGTHSFTFDHVYGNGGSPS 61
SVKVAV VRP E ++ K C+ G NP Q + SF+FD+ Y + SP
Sbjct: 5 SVKVAVRVRPFNSREMSRDSK-CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 62 SA-------MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQV 114
++ + ++ F+GYN + AYGQTG+GK+YTM G +E Q G+IPQ+
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM-MGKQEKDQQGIIPQL 122
Query: 115 MNALFNKI-ETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRP 173
LF++I +T M + + VS++EI E VRDLL+ +
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------------------NKG 164
Query: 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233
+++RE + +++AV + ++ ++ G+ +R +TNMN SSRSHA+F I
Sbjct: 165 NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNII 224
Query: 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRG 293
Q R H + T +K+ LVDLAGSERA TG+ G RLKEG +IN+
Sbjct: 225 FTQKR--HDAETNITTEK--------VSKISLVDLAGSERADSTGAKGTRLKEGANINKS 274
Query: 294 LLALGNVISALGD-------EKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPA 346
L LG VISAL + KK+++ +PYRDS LT LL+++LGGNS+T M+A +SPA
Sbjct: 275 LTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPA 334
Query: 347 DINAEESLNTLKYANRARNIQNKPVVN 373
DIN +E+L+TL+YA+RA+ I+N VN
Sbjct: 335 DINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 223 bits (569), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 216/387 (55%), Gaps = 52/387 (13%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHG------NP-QVQIGTHSFTFDHVYGNGGSPS 61
SVKVAV VRP E ++ K C+ G NP Q + SF+FD+ Y + SP
Sbjct: 5 SVKVAVRVRPFNSREMSRDSK-CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 62 SA-------MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQV 114
++ + ++ F+GYN + AYGQTG+GK+YTM G +E Q G+IPQ+
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM-MGKQEKDQQGIIPQL 122
Query: 115 MNALFNKI-ETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRP 173
LF++I +T M + + VS++EI E VRDLL+ +
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------------------NKG 164
Query: 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233
+++RE + +++AV + ++ ++ G+ +R +TNMN SSRSHA+F I
Sbjct: 165 NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNII 224
Query: 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRG 293
Q R H + T +K+ LVDLAGSERA TG+ G RLKEG +IN+
Sbjct: 225 FTQKR--HDAETNITTEK--------VSKISLVDLAGSERADSTGAKGTRLKEGANINKS 274
Query: 294 LLALGNVISALGD-------EKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPA 346
L LG VISAL + KK+++ +PYRDS LT LL+++LGGNS+T M+A +SPA
Sbjct: 275 LTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPA 334
Query: 347 DINAEESLNTLKYANRARNIQNKPVVN 373
DIN +E+L+TL+YA+RA+ I+N VN
Sbjct: 335 DINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 223 bits (568), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 215/387 (55%), Gaps = 52/387 (13%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHG------NP-QVQIGTHSFTFDHVYGNGGSPS 61
SVKVAV VRP E ++ K C+ G NP Q + SF+FD+ Y + SP
Sbjct: 5 SVKVAVRVRPFNSREMSRDSK-CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 62 SA-------MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQV 114
++ + ++ F+GYN + AYGQTG+GK+YTM G +E Q G+IPQ+
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM-MGKQEKDQQGIIPQL 122
Query: 115 MNALFNKI-ETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRP 173
LF++I +T M + + VS++EI E VRDLL+ +
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------------------NKG 164
Query: 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233
+++RE + +++AV + ++ ++ G+ R +TNMN SSRSHA+F I
Sbjct: 165 NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNII 224
Query: 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRG 293
Q R H + T +K+ LVDLAGSERA TG+ G RLKEG +IN+
Sbjct: 225 FTQKR--HDAETNITTEK--------VSKISLVDLAGSERADSTGAKGTRLKEGANINKS 274
Query: 294 LLALGNVISALGD-------EKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPA 346
L LG VISAL + KK+++ +PYRDS LT LL+++LGGNS+T M+A +SPA
Sbjct: 275 LTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPA 334
Query: 347 DINAEESLNTLKYANRARNIQNKPVVN 373
DIN +E+L+TL+YA+RA+ I+N VN
Sbjct: 335 DINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 223 bits (567), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 210/380 (55%), Gaps = 44/380 (11%)
Query: 5 SENCSVKVAVHVRPLIGDERAQGCKECVAV---THGNPQVQI-GTHSFTFDHVYGNGGSP 60
+E +V V V VRPL + R + E V T N Q+ G+ SF FD V+ +G
Sbjct: 1 AEEGAVAVCVRVRPL--NSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVF-HGNET 57
Query: 61 SSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFN 120
+ ++ E AP++D QGYN T+ AYGQT SGKTYTM + G+IP+ ++ +F
Sbjct: 58 TKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM---MGSEDHLGVIPRAIHDIFQ 114
Query: 121 KIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIRES 180
KI+ + EF L VS++EI E + DLL P+ IRE
Sbjct: 115 KIKKFPDR-EFLLRVSYMEIYNETITDLL-----------------CGTQKMKPLIIRED 156
Query: 181 SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240
N + +A TE V T + + +G SR G T MN +SSRSH IF + LE
Sbjct: 157 VNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILE----- 211
Query: 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNV 300
S + G P + + + L+LVDLAGSERA +TG+ G+RLKEG +INR L LG V
Sbjct: 212 ---SREKGEPS-NCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQV 267
Query: 301 ISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYA 360
I L D + G + YRDSKLTR+LQ+SLGGN+KT +I I+P ++ +E+L L++A
Sbjct: 268 IKKLSDGQV---GGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFA 322
Query: 361 NRARNIQNKPVVNRDLISSD 380
+ A+ ++N P VN +S+D
Sbjct: 323 STAKYMKNTPYVNE--VSTD 340
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 210/382 (54%), Gaps = 63/382 (16%)
Query: 10 VKVAVHVRPLIGDERAQGCKECVAV------------------THGNPQVQIGTHSFTFD 51
VKVAV +RP+ E K V V G P+V F +D
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKV------FAYD 56
Query: 52 HVYGNGGSPSSAMFG------ECVAP-LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLRE 104
H + + + +C+ ++ F GYNA + AYGQTGSGK+YTM +
Sbjct: 57 HCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM---MGT 113
Query: 105 GFQTGLIPQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGH 163
Q GLIP++ + LF + + ++ F++ VS++EI E+VRDLLD
Sbjct: 114 ADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPK----------- 162
Query: 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223
R +++RE S + G +++AV + +++ + + +G+ SR +TNMN +S
Sbjct: 163 ------GSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEES 216
Query: 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLR 283
SRSHA+F ITL L+ V +GT E + KL LVDLAGSERA +TG+ G R
Sbjct: 217 SRSHAVFKITLTHT--LYDVK--SGTSGEKV------GKLSLVDLAGSERATKTGAAGDR 266
Query: 284 LKEGIHINRGLLALGNVISALGDEKK-RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIAC 342
LKEG +IN+ L LG VISAL D+ + + VPYRDS LT LL+DSLGGNSKT M+A
Sbjct: 267 LKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVAT 326
Query: 343 ISPADINAEESLNTLKYANRAR 364
+SPA N +E+L+TL+YA+RA+
Sbjct: 327 VSPAADNYDETLSTLRYADRAK 348
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 219 bits (559), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 215/384 (55%), Gaps = 52/384 (13%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT---------HSFTFDHVYGNGGS 59
+++V V VRP ER V +V + T ++TFD V+G +
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFG-AST 76
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---------EGFQTGL 110
++ VAP++D + GYNAT+ AYGQTG+GKT+TM G R E G+
Sbjct: 77 KQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTM-EGERSPNEEYCWEEDPLAGI 135
Query: 111 IPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
IP+ ++ +F K+ + EF + VS +EI EE+ DLL+ ++ + ++ +
Sbjct: 136 IPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLN--------PSSDVSERLQMF 185
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
P + GVI + G E+ V+ E+ LE+G+ R T +T MN SSRSH++F
Sbjct: 186 DDP-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHI 290
++T+ M++ D +E KL+LVDLAGSE R+G+ R +E +I
Sbjct: 240 SVTI-HMKETTI----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINA 350
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG ++T +IA ISPA +N
Sbjct: 289 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 351 EESLNTLKYANRARNIQNKPVVNR 374
EE+L+TL+YA+RA+NI NKP VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 146/386 (37%), Positives = 216/386 (55%), Gaps = 52/386 (13%)
Query: 9 SVKVAVHVRPLIGDER---AQGCKEC------VAVTHGNPQVQIGTHSFTFDHVYGNGGS 59
+++V V RP ER A EC V+V G + ++TFD V+G +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFG-AST 76
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---------EGFQTGL 110
++ V P++D + GYN T+ AYGQTG+GKT+TM G R E G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSPNEEYTWEEDPLAGI 135
Query: 111 IPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
IP+ ++ +F K+ + EF + VS +EI EE+ DLL+ ++ + ++ +
Sbjct: 136 IPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLN--------PSSDVSERLQMF 185
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
P + GVI + G E+ V+ E+ LE+G+ R T +T MN SSRSH++F
Sbjct: 186 DDP-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHI 290
++T+ M++ D +E KL+LVDLAGSE R+G+ R +E +I
Sbjct: 240 SVTI-HMKETTI----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINA 350
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG ++T +IA ISPA +N
Sbjct: 289 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 351 EESLNTLKYANRARNIQNKPVVNRDL 376
EE+L+TL+YA+RA+NI NKP VN+ L
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQKL 369
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/381 (37%), Positives = 204/381 (53%), Gaps = 61/381 (16%)
Query: 10 VKVAVHVRPLIGDERAQGCKECVAVT-----------------HG----NPQV---QIGT 45
+KV V VRP E+A G + V V HG N V Q
Sbjct: 12 MKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKD 71
Query: 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG 105
F FD V+ + S S +F P++ GYN TVLAYG TG+GKT+TM L
Sbjct: 72 LKFVFDAVF-DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM---LGSA 127
Query: 106 FQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAG 165
+ G++ M L+ ++ ++ + VS++E+ E++RDLL
Sbjct: 128 DEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVN-------------- 173
Query: 166 KVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSR 225
SG P+ +RE + + + G T + +E+ L+ G+ +R T+MN SSR
Sbjct: 174 ----SG--PLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSR 227
Query: 226 SHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLK 285
SHA+F I L Q K S+ ++ AK+ L+DLAGSERA +G+ G R
Sbjct: 228 SHAVFQIYLRQQDKTASI-----------NQNVRIAKMSLIDLAGSERASTSGAKGTRFV 276
Query: 286 EGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISP 345
EG +INR LLALGNVI+AL D K++ + H+PYR+SKLTRLL+DSLGGN +T+MIA +SP
Sbjct: 277 EGTNINRSLLALGNVINALADSKRKNQ--HIPYRNSKLTRLLKDSLGGNCQTIMIAAVSP 334
Query: 346 ADINAEESLNTLKYANRARNI 366
+ + +++ NTLKYANRA++I
Sbjct: 335 SSVFYDDTYNTLKYANRAKDI 355
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 215/384 (55%), Gaps = 52/384 (13%)
Query: 9 SVKVAVHVRPLIGDER---AQGCKEC------VAVTHGNPQVQIGTHSFTFDHVYGNGGS 59
+++V V RP ER A EC V+V G + ++TFD V+G +
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFG-AST 67
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---------EGFQTGL 110
++ V P++D + GYN T+ AYGQTG+GKT+TM G R E G+
Sbjct: 68 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSPNEEYTWEEDPLAGI 126
Query: 111 IPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
IP+ ++ +F K+ + EF + VS +EI EE+ DLL+ ++ + ++ +
Sbjct: 127 IPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLN--------PSSDVSERLQMF 176
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
P + GVI + G E+ V+ E+ LE+G+ R T +T MN SSRSH++F
Sbjct: 177 DDP-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 230
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHI 290
++T+ M++ D +E KL+LVDLAGSE R+G+ R +E +I
Sbjct: 231 SVTI-HMKETTI----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 279
Query: 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINA 350
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG ++T +IA ISPA +N
Sbjct: 280 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 334
Query: 351 EESLNTLKYANRARNIQNKPVVNR 374
EE+L+TL+YA+RA+NI NKP VN+
Sbjct: 335 EETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 215/384 (55%), Gaps = 52/384 (13%)
Query: 9 SVKVAVHVRPLIGDER---AQGCKEC------VAVTHGNPQVQIGTHSFTFDHVYGNGGS 59
+++V V RP ER A EC V+V G + ++TFD V+G +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFG-AST 76
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---------EGFQTGL 110
++ V P++D + GYN T+ AYGQTG+GKT+TM G R E G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSPNEEYTWEEDPLAGI 135
Query: 111 IPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
IP+ ++ +F K+ + EF + VS +EI EE+ DLL+ ++ + ++ +
Sbjct: 136 IPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLN--------PSSDVSERLQMF 185
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
P + GVI + G E+ V+ E+ LE+G+ R T +T MN SSRSH++F
Sbjct: 186 DDP-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHI 290
++T+ M++ D +E KL+LVDLAGSE R+G+ R +E +I
Sbjct: 240 SVTI-HMKETTI----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINA 350
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG ++T +IA ISPA +N
Sbjct: 289 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 351 EESLNTLKYANRARNIQNKPVVNR 374
EE+L+TL+YA+RA+NI NKP VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 216 bits (550), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 215/384 (55%), Gaps = 52/384 (13%)
Query: 9 SVKVAVHVRPLIGDER---AQGCKEC------VAVTHGNPQVQIGTHSFTFDHVYGNGGS 59
+++V V RP ER A EC V+V G + ++TFD V+G +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFG-AST 76
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---------EGFQTGL 110
++ V P++D + GYN T+ AYGQTG+GKT+TM G R E G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSPNEEYTWEEDPLDGI 135
Query: 111 IPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
IP+ ++ +F K+ + EF + VS +EI EE+ DLL+ ++ + ++ +
Sbjct: 136 IPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLN--------PSSDVSERLQMF 185
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
P + GVI + G E+ V+ E+ LE+G+ R T +T MN SSRSH++F
Sbjct: 186 DDP-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHI 290
++T+ M++ D +E KL+LVDLAGSE R+G+ R +E +I
Sbjct: 240 SVTI-HMKETTI----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINA 350
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG ++T +IA ISPA +N
Sbjct: 289 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 351 EESLNTLKYANRARNIQNKPVVNR 374
EE+L+TL+YA+RA+NI NKP VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 216 bits (550), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 215/384 (55%), Gaps = 52/384 (13%)
Query: 9 SVKVAVHVRPLIGDER---AQGCKEC------VAVTHGNPQVQIGTHSFTFDHVYGNGGS 59
+++V V RP ER A EC V+V G + ++TFD V+G +
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFG-AST 75
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---------EGFQTGL 110
++ V P++D + GYN T+ AYGQTG+GKT+TM G R E G+
Sbjct: 76 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSPNEEYTWEEDPLAGI 134
Query: 111 IPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
IP+ ++ +F K+ + EF + VS +EI EE+ DLL+ ++ + ++ +
Sbjct: 135 IPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLN--------PSSDVSERLQMF 184
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
P + GVI + G E+ V+ E+ LE+G+ R T +T MN SSRSH++F
Sbjct: 185 DDP-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 238
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHI 290
++T+ M++ D +E KL+LVDLAGSE R+G+ R +E +I
Sbjct: 239 SVTI-HMKETTI----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 287
Query: 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINA 350
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG ++T +IA ISPA +N
Sbjct: 288 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 342
Query: 351 EESLNTLKYANRARNIQNKPVVNR 374
EE+L+TL+YA+RA+NI NKP VN+
Sbjct: 343 EETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 216 bits (550), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 215/384 (55%), Gaps = 52/384 (13%)
Query: 9 SVKVAVHVRPLIGDER---AQGCKEC------VAVTHGNPQVQIGTHSFTFDHVYGNGGS 59
+++V V RP ER A EC V+V G + ++TFD V+G +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFG-AST 76
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---------EGFQTGL 110
++ V P++D + GYN T+ AYGQTG+GKT+TM G R E G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSPNEEYTWEEVPLAGI 135
Query: 111 IPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
IP+ ++ +F K+ + EF + VS +EI EE+ DLL+ ++ + ++ +
Sbjct: 136 IPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLN--------PSSDVSERLQMF 185
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
P + GVI + G E+ V+ E+ LE+G+ R T +T MN SSRSH++F
Sbjct: 186 DDP-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHI 290
++T+ M++ D +E KL+LVDLAGSE R+G+ R +E +I
Sbjct: 240 SVTI-HMKETTI----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINA 350
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG ++T +IA ISPA +N
Sbjct: 289 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 351 EESLNTLKYANRARNIQNKPVVNR 374
EE+L+TL+YA+RA+NI NKP VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 216 bits (550), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 215/384 (55%), Gaps = 52/384 (13%)
Query: 9 SVKVAVHVRPLIGDER---AQGCKEC------VAVTHGNPQVQIGTHSFTFDHVYGNGGS 59
+++V V RP ER A EC V+V G + ++TFD V+G +
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFG-AST 78
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---------EGFQTGL 110
++ V P++D + GYN T+ AYGQTG+GKT+TM G R E G+
Sbjct: 79 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSPNEEYTWEEDPLAGI 137
Query: 111 IPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
IP+ ++ +F K+ + EF + VS +EI EE+ DLL+ ++ + ++ +
Sbjct: 138 IPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLN--------PSSDVSERLQMF 187
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
P + GVI + G E+ V+ E+ LE+G+ R T +T MN SSRSH++F
Sbjct: 188 DDP-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 241
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHI 290
++T+ M++ D +E KL+LVDLAGSE R+G+ R +E +I
Sbjct: 242 SVTI-HMKETTI----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 290
Query: 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINA 350
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG ++T +IA ISPA +N
Sbjct: 291 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 345
Query: 351 EESLNTLKYANRARNIQNKPVVNR 374
EE+L+TL+YA+RA+NI NKP VN+
Sbjct: 346 EETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 213 bits (541), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 139/350 (39%), Positives = 190/350 (54%), Gaps = 64/350 (18%)
Query: 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG 105
H T +HVY + G +D F+GY+ + AYGQTGSGK+YTM +
Sbjct: 113 HYATQEHVYDSLGEE-----------FLDHNFEGYHTCIFAYGQTGSGKSYTM---MGTP 158
Query: 106 FQTGLIPQVMNALFNKIETLRHQ---MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANG 162
Q GLIP+ LF +I + + + + + + VS+ E+ E VRDLL
Sbjct: 159 DQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPV---------- 208
Query: 163 HAGKVSISGRPP--IQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMN 220
+ +PP +++RES + TEV V L+E+ + G SR ST MN
Sbjct: 209 ------VPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMN 262
Query: 221 NQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSD 280
+ SSRSHA+FTI L+Q+ H + D+ T +++ LVDLAGSERAK T +
Sbjct: 263 DTSSRSHAVFTIMLKQIH--HDLETDDTTERS--------SRIRLVDLAGSERAKSTEAT 312
Query: 281 GLRLKEGIHINRGLLALGNVISALGDEKK--------------RREGVH---VPYRDSKL 323
G RL+EG +IN+ L LG VI+AL D K R G VPYRDS L
Sbjct: 313 GQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVL 372
Query: 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373
T LL+DSLGGNSKT MIACISP D +E+L+TL+YA++A+ I+ + VVN
Sbjct: 373 TWLLKDSLGGNSKTAMIACISPTDY--DETLSTLRYADQAKRIRTRAVVN 420
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 212 bits (539), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 212/380 (55%), Gaps = 52/380 (13%)
Query: 9 SVKVAVHVRPLIGDER---AQGCKEC------VAVTHGNPQVQIGTHSFTFDHVYGNGGS 59
+++V V RP ER A EC V+V G + ++TFD V+G +
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFG-AST 61
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---------EGFQTGL 110
++ V P++D + GYN T+ AYGQTG+GKT+TM G R E G+
Sbjct: 62 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSPNEEYTWEEDPLAGI 120
Query: 111 IPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
IP+ ++ +F K+ + EF + VS +EI EE+ DLL+ ++ + ++ +
Sbjct: 121 IPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLN--------PSSDVSERLQMF 170
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
P + GVI + G E+ V+ E+ LE+G+ R T +T MN SSRSH++F
Sbjct: 171 DDP-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 224
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHI 290
++T+ M++ D +E KL+LVDLAGSE R+G+ R +E +I
Sbjct: 225 SVTI-HMKETTI----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 273
Query: 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINA 350
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG ++T +IA ISPA +N
Sbjct: 274 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 328
Query: 351 EESLNTLKYANRARNIQNKP 370
EE+L+TL+YA+RA+NI NKP
Sbjct: 329 EETLSTLEYAHRAKNILNKP 348
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 199/387 (51%), Gaps = 50/387 (12%)
Query: 10 VKVAVHVRPLIGDERAQGCKECVAV----THGNPQVQIGTHSFTFDHVYGNGGSPSSAMF 65
++V +RPL E ++ K+ + T +P +D V+ S
Sbjct: 15 IRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQDDIF- 73
Query: 66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQT--GLIPQVMNALFNKIE 123
E LV GYN + AYGQTGSGKT+T+ G ++ GL P+ LFN ++
Sbjct: 74 -EDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI-----YGHESNPGLTPRATKELFNILK 127
Query: 124 TLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIRESSNG 183
+ F L +E+ ++ + DLL + R ++I++ S G
Sbjct: 128 RDSKRFSFSLKAYMVELYQDTLVDLLLPKS----------------ARRLKLEIKKDSKG 171
Query: 184 VITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243
++ + T + ++TL+E+ LE+GS R TNMN +SSRSH I ++ +E + L +
Sbjct: 172 MVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESI-DLQTQ 230
Query: 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303
S G KL VDLAGSER K++GS G +LKE IN+ L ALG+VI A
Sbjct: 231 SAARG-------------KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGA 277
Query: 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRA 363
L + H+PYR+ KLT L+ DSLGGN+KT+M +SPA+ N +E+ N+L YA+R
Sbjct: 278 LSSGNQ-----HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRV 332
Query: 364 RNIQNKPVVNRDLISSDMQKLRQQLKY 390
R I N P ++ + S +M +L++ + Y
Sbjct: 333 RTIVNDP--SKHISSKEMVRLKKLVAY 357
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 192 bits (487), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 188/341 (55%), Gaps = 42/341 (12%)
Query: 50 FDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTG 109
+D V+ +G + +F E LV GYN + AYGQTGSGKT+T+ G
Sbjct: 51 YDRVF-DGNATQDDVF-EDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGA---DSNPG 105
Query: 110 LIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSI 169
L P+ M+ LF ++ ++ F L +E+ ++ + DLL
Sbjct: 106 LTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQ---------------- 149
Query: 170 SGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229
+ R + I++ S G++++ T V+++T +E+ +++GS R T T MN QSSRSH I
Sbjct: 150 AKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLI 209
Query: 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIH 289
++ +E L + + G KL VDLAGSER K++GS G +LKE
Sbjct: 210 VSVIIEST-NLQTQAIARG-------------KLSFVDLAGSERVKKSGSAGNQLKEAQS 255
Query: 290 INRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADIN 349
IN+ L ALG+VISAL + H+PYR+ KLT L+ DSLGGN+KT+M ISPA+ N
Sbjct: 256 INKSLSALGDVISALSSGNQ-----HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESN 310
Query: 350 AEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKY 390
+E+ N+L YA+R R+I N P ++++ S ++ +L++ + Y
Sbjct: 311 LDETHNSLTYASRVRSIVNDP--SKNVSSKEVARLKKLVSY 349
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 182 bits (463), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 128/379 (33%), Positives = 193/379 (50%), Gaps = 56/379 (14%)
Query: 10 VKVAVHVRPLIGDERAQGCKECV------AVTHGNPQVQIGTHSFTFDHVYGNGGSPSSA 63
V+VAV +RP + CV ++ N + T + FD YG S
Sbjct: 23 VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGER-STQQD 81
Query: 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIE 123
++ V P++ L +G NA+VLAYG TG+GKT+TM L Q G+IP+ AL + ++
Sbjct: 82 IYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM---LGSPEQPGVIPR---ALMDLLQ 135
Query: 124 TLRHQ------MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQI 177
R + + +S++EI +E+V DLLD A+G + I
Sbjct: 136 LTREEGAEGRPWALSVTMSYLEIYQEKVLDLLD--------PASGD-----------LVI 176
Query: 178 RESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237
RE G I + G ++ +++ + S +R G+T +N +SSRSHA+ + ++Q
Sbjct: 177 REDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQR 236
Query: 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLAL 297
+L G KL+L+DLAGSE +RTG+ GLRLKE IN L L
Sbjct: 237 ERLAPFRQREG-------------KLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVL 283
Query: 298 GNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTL 357
G V+ AL R VPYRDSKLTRLLQDSLGG++ +++IA I+P ++++ L
Sbjct: 284 GKVVDALNQGLPR-----VPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSAL 338
Query: 358 KYANRARNIQNKPVVNRDL 376
+A R++ + N+P N L
Sbjct: 339 NFAARSKEVINRPFTNESL 357
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 194/376 (51%), Gaps = 68/376 (18%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTH--------SFTFDHVYGNGGSP 60
+++V VRP + E +G + AVT I H SF D V+ SP
Sbjct: 5 NIRVIARVRP-VTKEDGEGPEATNAVTFDADDDSI-IHLLHKGKPVSFELDKVF----SP 58
Query: 61 SSA---MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM-GTGLREGFQTGLIPQVMN 116
++ +F E V LV G+N + AYGQTG+GKTYTM GT G + +
Sbjct: 59 QASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQ----RALQ 113
Query: 117 ALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPP-- 174
LF++++ E+ + VS EI E +RDLL G+ P
Sbjct: 114 LLFSEVQEKASDWEYTITVSAAEIYNEVLRDLL---------------------GKEPQE 152
Query: 175 ---IQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231
I++ +G + + G TE V ++ ++ E G +R T TN+N SSRSHA+
Sbjct: 153 KLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLI 212
Query: 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHIN 291
+T+ V G KL+LVDLAGSER ++G++G RL+E HIN
Sbjct: 213 VTV------RGVDCSTGLRT--------TGKLNLVDLAGSERVGKSGAEGSRLREAQHIN 258
Query: 292 RGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAE 351
+ L ALG+VI+AL + R+G HVP+R+SKLT LLQDSL G+SKT+M+ +SP + N
Sbjct: 259 KSLSALGDVIAAL----RSRQG-HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTS 313
Query: 352 ESLNTLKYANRARNIQ 367
E+L +LK+A R R+++
Sbjct: 314 ETLYSLKFAERVRSVE 329
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 163/322 (50%), Gaps = 47/322 (14%)
Query: 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQ 107
F FD ++ S+ + E ++ L+ G N V AYGQTGSGKT+TM
Sbjct: 432 FLFDKIFER--EQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP-----T 484
Query: 108 TGLIPQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGH--- 163
G+IP + +FN IE L+ + + + FIEI E + DLL+ H
Sbjct: 485 NGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDI 544
Query: 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223
AGK +++ I I+ S E A+ L Q + R+T +T N+ S
Sbjct: 545 AGKTTVTNVSTIDIK-----------SPEQAI-------TILNQANKKRSTAATKSNDHS 586
Query: 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLR 283
SRSH+IF I L+ L +E L+L+DLAGSER + ++G R
Sbjct: 587 SRSHSIFIIDLQGYNSLT--------------KESSYGTLNLIDLAGSERLNNSRAEGDR 632
Query: 284 LKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACI 343
LKE IN+ L LG+VI +L ++G HVPYR+SKLT LL+ SLGGNSKT+M I
Sbjct: 633 LKETQAINKSLSCLGDVIHSL----NLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNI 688
Query: 344 SPADINAEESLNTLKYANRARN 365
SP + E++N+L++A + N
Sbjct: 689 SPLTKDLNETINSLRFATKVNN 710
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 167/327 (51%), Gaps = 51/327 (15%)
Query: 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMG---TGL 102
+F FD+ + + +P+ ++ PLV+ +F+ AT AYGQTGSGKT+TMG +G
Sbjct: 139 QTFRFDYAFDDS-APNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGK 197
Query: 103 REGFQTGLIPQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTAN 161
+ G+ +F ++ ++ +E Q++ +F EI +V DLL+
Sbjct: 198 NQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNR---------- 247
Query: 162 GHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNN 221
+ +++ E + + G E V ++++ ++ G+ R +G T+ N
Sbjct: 248 ----------KTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANA 297
Query: 222 QSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDG 281
SSRSHA+F I L + KLH K L+DLAG+ER T S
Sbjct: 298 HSSRSHAVFQIILRRKGKLH-------------------GKFSLIDLAGNERGADTSSAD 338
Query: 282 LRLK-EGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDS-LGGNSKTVM 339
+ + EG IN+ LLAL I ALG R H P+R SKLT++L+DS +G NS+T M
Sbjct: 339 RQTRLEGAEINKSLLALKECIRALG-----RNKPHTPFRASKLTQVLRDSFIGENSRTCM 393
Query: 340 IACISPADINAEESLNTLKYANRARNI 366
IA ISP + E +LNTL+YANR + +
Sbjct: 394 IATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 179/378 (47%), Gaps = 69/378 (18%)
Query: 10 VKVAVHVRPLIGDERAQGCKE---------CVAVTHGNPQVQIG------THSFTFDHVY 54
+ V V RPL E A+ KE C+ + H P++++ +F FD +
Sbjct: 73 ICVCVRKRPLNKQELAK--KEIDVISVPSKCLLLVH-EPKLKVDLTKYLENQAFCFDFAF 129
Query: 55 GNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMG---TGLREGFQTGLI 111
S + ++ PLV +F+G AT AYGQTGSGKT+TMG +G + G+
Sbjct: 130 DETAS-NEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIY 188
Query: 112 PQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
+F R++ + +++V+F EI +V DLL+
Sbjct: 189 AMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK------------------- 229
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
+ +++ E S + + G E V ++ + GS R +G T N+ SSRSHA F
Sbjct: 230 -KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACF 288
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS-DGLRLKEGIH 289
I L +LH K LVDLAG+ER T S D EG
Sbjct: 289 QILLRTKGRLH-------------------GKFSLVDLAGNERGADTSSADRQTRMEGAE 329
Query: 290 INRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDS-LGGNSKTVMIACISPADI 348
IN+ LLAL I ALG K H P+R+SKLT++L+DS +G NS+T MIA ISP
Sbjct: 330 INKSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGIS 384
Query: 349 NAEESLNTLKYANRARNI 366
+ E +LNTL+YA+R + +
Sbjct: 385 SCEYTLNTLRYADRVKEL 402
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 165/320 (51%), Gaps = 37/320 (11%)
Query: 47 SFTFDHVYGNGGSPSSAMFGECVAP-LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG 105
SF D V + S + E VA +V GYN T++ YGQTG+GKTYTM G E
Sbjct: 73 SFKLDGVLHDA---SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM-MGATEN 128
Query: 106 FQ-TGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHA 164
++ G++P+ + +F IE R + VS++EI E + DLL
Sbjct: 129 YKHRGILPRALQQVFRMIEE-RPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVT---- 183
Query: 165 GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSS 224
P+ I E+ GV + G + + ++ + L +G +R S MN SS
Sbjct: 184 ---------PMTIVENPQGVF-IKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSS 233
Query: 225 RSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRL 284
RSH IFTI LE + S +E+Y +K++LVDLAGSER ++GS+G L
Sbjct: 234 RSHCIFTIYLEAHSRTLS------------EEKYITSKINLVDLAGSERLGKSGSEGQVL 281
Query: 285 KEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACIS 344
KE +IN+ L L I ALGD+K+ H+P+R KLT L+DSLGGN V++ I
Sbjct: 282 KEATYINKSLSFLEQAIIALGDQKRD----HIPFRQCKLTHALKDSLGGNCNMVLVTNIY 337
Query: 345 PADINAEESLNTLKYANRAR 364
EE+L++L++A+R +
Sbjct: 338 GEAAQLEETLSSLRFASRMK 357
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 159 bits (402), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 174/322 (54%), Gaps = 37/322 (11%)
Query: 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLRE 104
H F FD ++ + + +F E V LV GYN + AYGQTGSGKT+TM L
Sbjct: 107 VHEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTM---LNP 161
Query: 105 GFQTGLIPQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGH 163
G G+IP ++ +FN I L+ + +++++ FIEI E + DLL + N +
Sbjct: 162 G--DGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLL--------RSDNNN 211
Query: 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223
SI + I+ + T+ T V + + + + L++ + R+T ST N S
Sbjct: 212 KEDTSIGLKHEIR-HDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHS 270
Query: 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLR 283
SRSH+IF I L +G+ + Y L+LVDLAGSER + G R
Sbjct: 271 SRSHSIFIIHL------------SGSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDR 316
Query: 284 LKEGIHINRGLLALGNVISALG--DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIA 341
L+E +IN+ L ALG+VI ALG D KR H+P+R+SKLT LLQ SL G+SKT+M
Sbjct: 317 LRETQNINKSLSALGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 372
Query: 342 CISPADINAEESLNTLKYANRA 363
ISP+ + E+LN+L++A++
Sbjct: 373 NISPSSSHINETLNSLRFASKV 394
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 179/355 (50%), Gaps = 43/355 (12%)
Query: 14 VHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73
+ V+P D QG + + GN QV F FD ++ + + +F E V L+
Sbjct: 50 IKVQPFDDDNGDQG----MTINRGNSQVI----PFKFDKIF-DQQETNDEIFKE-VGQLI 99
Query: 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQ-MEFQ 132
GYN + AYGQTGSGKTYTM L G G++P +N +F+ I+ L + ++
Sbjct: 100 QSSLDGYNVCIFAYGQTGSGKTYTM---LNPG--DGIVPATINHIFSWIDKLAARGWSYK 154
Query: 133 LHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIRESSNGVITLAGSTE 192
+ FIEI E + DLL K I ++ +N T
Sbjct: 155 VSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITN-------ITT 207
Query: 193 VAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDE 252
+++ + L++ + R+T ST N SSRSH+IF I LE + GT ++
Sbjct: 208 CVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLE--------GKNEGTGEK 259
Query: 253 DMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG--DEKKR 310
L+LVDLAGSER + G RL+E IN+ L LG+VI AL D +KR
Sbjct: 260 SQ------GILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKR 313
Query: 311 REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARN 365
H+P+R+SKLT LLQ SL G+SKT+M ISPA ++ E++N+L++A++ N
Sbjct: 314 ----HIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNN 364
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 179/378 (47%), Gaps = 69/378 (18%)
Query: 10 VKVAVHVRPLIGDERAQGCKE---------CVAVTHGNPQVQIG------THSFTFDHVY 54
+ V V RPL E A+ KE C+ + H P++++ +F FD +
Sbjct: 1 ICVCVRKRPLNKQELAK--KEIDVISVPSKCLLLVH-EPKLKVDLTKYLENQAFCFDFAF 57
Query: 55 GNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMG---TGLREGFQTGLI 111
S + ++ PLV +F+G AT AYGQTGSGKT+TMG +G + G+
Sbjct: 58 DETAS-NEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIY 116
Query: 112 PQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
+F R++ + +++V+F EI +V DLL+
Sbjct: 117 AMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK------------------- 157
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
+ +++ E S + + G E V ++ + GS R +G T N+ SSRSHA F
Sbjct: 158 -KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACF 216
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS-DGLRLKEGIH 289
I L +LH K LVDLAG+ER T S D EG
Sbjct: 217 QILLRTKGRLH-------------------GKFSLVDLAGNERGADTSSADRQTRMEGAE 257
Query: 290 INRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDS-LGGNSKTVMIACISPADI 348
IN+ LLAL I ALG K H P+R+SKLT++L+DS +G NS+T MIA ISP
Sbjct: 258 INKSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGIS 312
Query: 349 NAEESLNTLKYANRARNI 366
+ E +LNTL+YA+R + +
Sbjct: 313 SCEYTLNTLRYADRVKEL 330
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 121/366 (33%), Positives = 178/366 (48%), Gaps = 63/366 (17%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNG 57
+++V +RP + E + C C H V++ G F+FD V+
Sbjct: 68 NIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 125
Query: 58 GSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNA 117
S S E V+PL+ GYN + AYGQTGSGKTYTM G+ E G+IP+ ++
Sbjct: 126 SSQSDIF--EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD-GVPES--VGVIPRTVDL 180
Query: 118 LFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQ 176
LF+ I R+ E+++ +F+EI E + DLL + + ++
Sbjct: 181 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS-------------------NEQKDME 221
Query: 177 IRESSNGV--ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234
IR + N I ++ TE V + + ++RAT ST N +SSRSHA+ + L
Sbjct: 222 IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL 281
Query: 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGL 294
G E +E ++LVDLAGSE K + R+ E +INR L
Sbjct: 282 I------------GRHAEK--QEISVGSINLVDLAGSESPKTST----RMTETKNINRSL 323
Query: 295 LALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESL 354
L NVI AL ++ H+PYR+SKLT LL SLGGNSKT+M +SP +ES+
Sbjct: 324 SELTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESV 378
Query: 355 NTLKYA 360
+L++A
Sbjct: 379 KSLRFA 384
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 121/366 (33%), Positives = 177/366 (48%), Gaps = 63/366 (17%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNG 57
+++V +RP + E + C C H V++ G F+FD V+
Sbjct: 60 NIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 117
Query: 58 GSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNA 117
S S E V+PL+ GYN + AYGQTGSGKTYTM G+ E G+IP+ ++
Sbjct: 118 SSQSDIF--EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD-GVPES--VGVIPRTVDL 172
Query: 118 LFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQ 176
LF+ I R+ E+++ +F+EI E + DLL + ++
Sbjct: 173 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------------QKDME 213
Query: 177 IRESSNGV--ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234
IR + N I ++ TE V + + ++RAT ST N +SSRSHA+ + L
Sbjct: 214 IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL 273
Query: 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGL 294
G E +E ++LVDLAGSE K + R+ E +INR L
Sbjct: 274 I------------GRHAEK--QEISVGSINLVDLAGSESPKTST----RMTETKNINRSL 315
Query: 295 LALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESL 354
L NVI AL ++ H+PYR+SKLT LL SLGGNSKT+M +SP +ES+
Sbjct: 316 SELTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESV 370
Query: 355 NTLKYA 360
+L++A
Sbjct: 371 KSLRFA 376
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 181/378 (47%), Gaps = 69/378 (18%)
Query: 10 VKVAVHVRPLIGDERAQGCKE---------CVAVTHGNPQVQIG------THSFTFDHVY 54
+ V V RPL E A+ KE C+ + H P++++ +F FD +
Sbjct: 53 ICVCVRKRPLNKQELAK--KEIDVISIPSKCLLLVH-EPKLKVDLTKYLENQAFCFDFAF 109
Query: 55 GNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMG---TGLREGFQTGLI 111
S + ++ PLV +F+G AT AYGQTGSGKT+TMG +G + G+
Sbjct: 110 DETAS-NEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIY 168
Query: 112 PQVMNALF-NKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSIS 170
+F K + ++ +++V+F EI ++ DLL+
Sbjct: 169 AMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK------------------- 209
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
+ +++ E + + G E VN+ ++ ++ GS R +G T N+ SSRSHA F
Sbjct: 210 -KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACF 268
Query: 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS-DGLRLKEGIH 289
I L ++H K LVDLAG+ER T S D EG
Sbjct: 269 QIILRAKGRMH-------------------GKFSLVDLAGNERGADTSSADRQTRMEGAE 309
Query: 290 INRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDS-LGGNSKTVMIACISPADI 348
IN+ LLAL I ALG K H P+R+SKLT++L+DS +G NS+T MIA ISP
Sbjct: 310 INKSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGIS 364
Query: 349 NAEESLNTLKYANRARNI 366
+ E +LNTL+YA+R + +
Sbjct: 365 SCEYTLNTLRYADRVKEL 382
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 176/364 (48%), Gaps = 59/364 (16%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNG 57
+++V +RP + E + C C H V++ G F+FD V+
Sbjct: 54 NIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 111
Query: 58 GSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNA 117
S S E V+PL+ GYN + AYGQTGSGKTYTM G+ E G+IP+ ++
Sbjct: 112 SSQSDIF--EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD-GVPES--VGVIPRTVDL 166
Query: 118 LFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQ 176
LF+ I R+ E+++ +F+EI E + DLL I+
Sbjct: 167 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDME-----------------IR 209
Query: 177 IRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236
+ +++ I ++ TE V + + ++RAT ST N +SSRSHA+ + L
Sbjct: 210 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI- 268
Query: 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLA 296
G E +E ++LVDLAGSE K + R+ E +INR L
Sbjct: 269 -----------GRHAEK--QEISVGSINLVDLAGSESPKTST----RMTETKNINRSLSE 311
Query: 297 LGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNT 356
L NVI AL ++ H+PYR+SKLT LL SLGGNSKT+M +SP +ES+ +
Sbjct: 312 LTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKS 366
Query: 357 LKYA 360
L++A
Sbjct: 367 LRFA 370
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 174/322 (54%), Gaps = 39/322 (12%)
Query: 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG 105
H F FD ++ + + +F E V LV GYN + AYGQTGSGKT+TM L G
Sbjct: 63 HEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---LNPG 117
Query: 106 FQTGLIPQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHA 164
G+IP ++ +FN I L+ + +++++ FIEI E + DLL + N +
Sbjct: 118 --DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL--------RSDNNNK 167
Query: 165 GKVSISGRPPIQ-IRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223
SI + I+ +E+ IT S ++ + E+ L++ + R+T ST N S
Sbjct: 168 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEII--LKKANKLRSTASTASNEHS 225
Query: 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLR 283
SRSH+IF I L G+ + Y L+LVDLAGSER + G R
Sbjct: 226 SRSHSIFIIHLS------------GSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDR 271
Query: 284 LKEGIHINRGLLALGNVISALG--DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIA 341
L+E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ SL G+SKT+M
Sbjct: 272 LRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 327
Query: 342 CISPADINAEESLNTLKYANRA 363
ISP+ + E+LN+L++A++
Sbjct: 328 NISPSSSHINETLNSLRFASKV 349
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 176/364 (48%), Gaps = 59/364 (16%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNG 57
+++V +RP + E + C C H V++ G F+FD V+
Sbjct: 57 NIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 114
Query: 58 GSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNA 117
S S E V+PL+ GYN + AYGQ+GSGKTYTM G+ E G+IP+ ++
Sbjct: 115 SSQSDIF--EMVSPLIQSALDGYNICIFAYGQSGSGKTYTMD-GVPES--VGVIPRTVDL 169
Query: 118 LFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQ 176
LF+ I R+ E+++ +F+EI E + DLL I+
Sbjct: 170 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDME-----------------IR 212
Query: 177 IRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236
+ +++ I ++ TE V + + ++RAT ST N +SSRSHA+ + L
Sbjct: 213 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI- 271
Query: 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLA 296
G E +E ++LVDLAGSE K + R+ E +INR L
Sbjct: 272 -----------GRHAEK--QEISVGSINLVDLAGSESPKTST----RMTETKNINRSLSE 314
Query: 297 LGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNT 356
L NVI AL ++ H+PYR+SKLT LL SLGGNSKT+M +SP +ES+ +
Sbjct: 315 LTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKS 369
Query: 357 LKYA 360
L++A
Sbjct: 370 LRFA 373
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 174/322 (54%), Gaps = 39/322 (12%)
Query: 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG 105
H F FD ++ + + +F E V LV GYN + AYGQTGSGKT+TM L G
Sbjct: 51 HEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---LNPG 105
Query: 106 FQTGLIPQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHA 164
G+IP ++ +FN I L+ + +++++ FIEI E + DLL + N +
Sbjct: 106 --DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL--------RSDNNNK 155
Query: 165 GKVSISGRPPIQ-IRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223
SI + I+ +E+ IT S ++ + E+ L++ + R+T ST N S
Sbjct: 156 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEII--LKKANKLRSTASTASNEHS 213
Query: 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLR 283
SRSH+IF I L G+ + Y L+LVDLAGSER + G R
Sbjct: 214 SRSHSIFIIHLS------------GSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDR 259
Query: 284 LKEGIHINRGLLALGNVISALG--DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIA 341
L+E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ SL G+SKT+M
Sbjct: 260 LRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 315
Query: 342 CISPADINAEESLNTLKYANRA 363
ISP+ + E+LN+L++A++
Sbjct: 316 NISPSSSHINETLNSLRFASKV 337
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 167/326 (51%), Gaps = 45/326 (13%)
Query: 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG 105
H F+FD V+ G S +F E +A LV GY + AYGQTGSGKT+TM G
Sbjct: 83 HDFSFDRVFPPG-SGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGD 140
Query: 106 FQT-GLIPQVMNALFNKIETLRHQM-EFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGH 163
Q GLIP+ + LF+ + L Q + S++EI E VRDLL T G
Sbjct: 141 PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLL------ATGTRKGQ 194
Query: 164 AGKVSISGRPPIQIRESSNGV--ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNN 221
G+ +IR + G +T+ + V V+ +E+ A L +RA T N
Sbjct: 195 GGEC--------EIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNE 246
Query: 222 QSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFC-AKLHLVDLAGSERAKRTGSD 280
+SSRSH++F + Q+ HS C A L LVDLAGSER +
Sbjct: 247 RSSRSHSVFQL---QISGEHS------------SRGLQCGAPLSLVDLAGSERLDPGLAL 291
Query: 281 GL----RLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSK 336
G RL+E IN L LG VI AL +++ HVPYR+SKLT LLQ+SLGG++K
Sbjct: 292 GPGERERLRETQAINSSLSTLGLVIMALSNKES-----HVPYRNSKLTYLLQNSLGGSAK 346
Query: 337 TVMIACISPADINAEESLNTLKYANR 362
+M ISP + N ESLN+L++A++
Sbjct: 347 MLMFVNISPLEENVSESLNSLRFASK 372
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 175/364 (48%), Gaps = 59/364 (16%)
Query: 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNG 57
+++V +RP + E + C C H V++ G F+FD V+
Sbjct: 57 NIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 114
Query: 58 GSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNA 117
S S E V+PL+ GYN + AYGQTGSGKTYTM G+ E G+IP+ ++
Sbjct: 115 SSQSDIF--EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD-GVPES--VGVIPRTVDL 169
Query: 118 LFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQ 176
LF+ I R+ E+++ +F+EI E + DLL I+
Sbjct: 170 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDME-----------------IR 212
Query: 177 IRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236
+ +++ I ++ TE V + + ++RAT ST N +SSRSHA+ + L
Sbjct: 213 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI- 271
Query: 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLA 296
G E +E ++LVDLAGSE K + R+ E +I R L
Sbjct: 272 -----------GRHAEK--QEISVGSINLVDLAGSESPKTST----RMTETKNIKRSLSE 314
Query: 297 LGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNT 356
L NVI AL ++ H+PYR+SKLT LL SLGGNSKT+M +SP +ES+ +
Sbjct: 315 LTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKS 369
Query: 357 LKYA 360
L++A
Sbjct: 370 LRFA 373
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 152 bits (384), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 173/322 (53%), Gaps = 39/322 (12%)
Query: 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG 105
H F FD ++ + + +F E V LV GYN + AYGQTGSGKT+TM L G
Sbjct: 52 HEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---LNPG 106
Query: 106 FQTGLIPQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHA 164
G+IP ++ +FN I L+ + +++++ FIEI E + DLL + N +
Sbjct: 107 --DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL--------RSDNNNK 156
Query: 165 GKVSISGRPPIQ-IRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223
SI + I+ +E+ IT S ++ + E+ L++ + R+T ST N S
Sbjct: 157 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEII--LKKANKLRSTASTASNEHS 214
Query: 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLR 283
SRSH+IF I L G+ + Y L+LVDLAGS R + G R
Sbjct: 215 SRSHSIFIIHLS------------GSNAKTGAHSY--GTLNLVDLAGSARINVSQVVGDR 260
Query: 284 LKEGIHINRGLLALGNVISALG--DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIA 341
L+E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ SL G+SKT+M
Sbjct: 261 LRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 316
Query: 342 CISPADINAEESLNTLKYANRA 363
ISP+ + E+LN+L++A++
Sbjct: 317 NISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 173/322 (53%), Gaps = 39/322 (12%)
Query: 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG 105
H F FD ++ + + +F E V LV GYN + AYGQTGSGKT+TM L G
Sbjct: 52 HEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---LNPG 106
Query: 106 FQTGLIPQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHA 164
G+IP ++ +FN I L+ + +++++ FIEI E + DLL + N +
Sbjct: 107 --DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL--------RSDNNNK 156
Query: 165 GKVSISGRPPIQ-IRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223
SI + I+ +E+ IT S ++ + E+ L++ + R+T ST N S
Sbjct: 157 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEII--LKKANKLRSTASTASNEHS 214
Query: 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLR 283
SRSH+IF I L G+ + Y L+LVDLAGSER + G R
Sbjct: 215 SRSHSIFIIHLS------------GSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDR 260
Query: 284 LKEGIHINRGLLALGNVISALG--DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIA 341
L+E +I + L LG+VI ALG D KR H+P+R+SKLT LLQ SL G+SKT+M
Sbjct: 261 LRETQNIKKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 316
Query: 342 CISPADINAEESLNTLKYANRA 363
ISP+ + E+LN+L++A++
Sbjct: 317 NISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 173/322 (53%), Gaps = 39/322 (12%)
Query: 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG 105
H F FD ++ + + +F E V LV GYN + AYGQTGSGKT+TM L G
Sbjct: 52 HEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---LNPG 106
Query: 106 FQTGLIPQVMNALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHA 164
G+IP ++ +FN I L+ + +++++ FIEI E + DLL + N +
Sbjct: 107 --DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL--------RSDNNNK 156
Query: 165 GKVSISGRPPIQ-IRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223
SI + I+ +E+ IT S ++ + E+ L++ + R+T ST N S
Sbjct: 157 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEII--LKKANKLRSTASTASNEHS 214
Query: 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLR 283
S SH+IF I L G+ + Y L+LVDLAGSER + G R
Sbjct: 215 SASHSIFIIHLS------------GSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDR 260
Query: 284 LKEGIHINRGLLALGNVISALG--DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIA 341
L+E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ SL G+SKT+M
Sbjct: 261 LRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 316
Query: 342 CISPADINAEESLNTLKYANRA 363
ISP+ + E+LN+L++A++
Sbjct: 317 NISPSSSHINETLNSLRFASKV 338
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 150 bits (378), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 188/371 (50%), Gaps = 51/371 (13%)
Query: 9 SVKVAVHVRPLIGDE----------RAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGG 58
+++V VRP + +E + K ++T + +I +++F FD ++
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIF---- 61
Query: 59 SPSSA---MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVM 115
PS +F E + LV GYN + AYGQTGSGKTYTM L G G+IP +
Sbjct: 62 EPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTM---LNAG--DGMIPMTL 115
Query: 116 NALFNKIETLRHQ-MEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPP 174
+ +F L+ + +++ +IEI E + DLL ++ + ++ S +
Sbjct: 116 SHIFKWTANLKERGWNYEMECEYIEIYNETILDLL------RDFKSHDNIDEILDSQKHD 169
Query: 175 IQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234
I+ G + T + + + ++ L++ S R+T +T N +SSRSH++F + +
Sbjct: 170 IRHDHEKQGTY-ITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHI 228
Query: 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGL 294
R LH+ G KL+LVDLAGSER + G RL+E +IN+ L
Sbjct: 229 NG-RNLHTGETSQG-------------KLNLVDLAGSERINSSAVTGERLRETQNINKSL 274
Query: 295 LALGNVISALG--DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEE 352
LG+VI AL D KR ++P+R+SKLT LLQ SL G+SKT+M I P + E
Sbjct: 275 SCLGDVIYALNTPDAGKR----YIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISE 330
Query: 353 SLNTLKYANRA 363
+LN+L++A++
Sbjct: 331 TLNSLRFASKV 341
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 164/328 (50%), Gaps = 62/328 (18%)
Query: 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTG-----L 102
F FDH + S M+ + PLVD L +G+ T LAYGQTG+GK+Y+MG L
Sbjct: 63 FHFDHAFPATIS-QDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEIL 121
Query: 103 REGFQTGLIPQVMNALFNKIETLRHQME---FQLHVSFIEILKEEVRDLLDXXXXXXXXT 159
E G++P+ + +F ++ T R + Q++ SFIEI E+ DLL
Sbjct: 122 PE--HLGILPRALGDIFERV-TARQENNKDAIQVYASFIEIYNEKPFDLLG--------- 169
Query: 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNM 219
S P + R T + +++ ++ LE G+ +R TNM
Sbjct: 170 --------STPHMPMVAARCQR--------CTCLPLHSQADLHHILELGTRNRRVRPTNM 213
Query: 220 NNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS 279
N+ SSRSHAI TI ++ K H +++++VDLAGSE +RTG
Sbjct: 214 NSNSSRSHAIVTIHVKS--KTHH------------------SRMNIVDLAGSEGVRRTGH 253
Query: 280 DGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVM 339
+G+ +EG++IN GLL++ V+ ++ +PYRDS LT +LQ SL S
Sbjct: 254 EGVARQEGVNINLGLLSINKVVMSMAAGHTV-----IPYRDSVLTTVLQASLTAQSYLTF 308
Query: 340 IACISPADINAEESLNTLKYANRARNIQ 367
+ACISP + E+L+TL++ A+ ++
Sbjct: 309 LACISPHQCDLSETLSTLRFGTSAKKLR 336
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 162/325 (49%), Gaps = 62/325 (19%)
Query: 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTG-----L 102
F FDH + S M+ + PLVD L +G+ T LAYGQTG+GK+Y+MG L
Sbjct: 63 FHFDHAFPATIS-QDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEIL 121
Query: 103 REGFQTGLIPQVMNALFNKIETLRHQME---FQLHVSFIEILKEEVRDLLDXXXXXXXXT 159
E G++P+ + +F ++ T R + Q++ SFIEI E+ DLL
Sbjct: 122 PE--HLGILPRALGDIFERV-TARQENNKDAIQVYASFIEIYNEKPFDLLG--------- 169
Query: 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNM 219
S P + R T + +++ ++ LE G+ +R TNM
Sbjct: 170 --------STPHMPMVAARCQR--------CTCLPLHSQADLHHILELGTRNRRVRPTNM 213
Query: 220 NNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS 279
N+ SSRSHAI TI ++ K H +++++VDLAGSE +RTG
Sbjct: 214 NSNSSRSHAIVTIHVKS--KTHH------------------SRMNIVDLAGSEGVRRTGH 253
Query: 280 DGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVM 339
+G+ +EG++IN GLL++ V+ ++ +PYRDS LT +LQ SL S
Sbjct: 254 EGVARQEGVNINLGLLSINKVVMSMAAGHTV-----IPYRDSVLTTVLQASLTAQSYLTF 308
Query: 340 IACISPADINAEESLNTLKYANRAR 364
+ACISP + E+L+TL++ A+
Sbjct: 309 LACISPHQCDLSETLSTLRFGTSAK 333
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 179/386 (46%), Gaps = 66/386 (17%)
Query: 10 VKVAVHVRPLIGDERAQGCKECVAVTHG------NPQVQIGT------HSFTFDHVYGNG 57
+KV V RPL E+ + + + V + P+ ++ H F D V+ +
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 58 GSPSSAMFGECVAPLVDGLFQ-GYNATVLAYGQTGSGKTYTMGTGLREGFQT---GLIPQ 113
+ ++ + PL+ L++ G + AYGQTGSGKTYTM G + Q+ G+
Sbjct: 62 -VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM-LGSQPYGQSDTPGIFQY 119
Query: 114 VMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRP 173
+F + + +SF EI ++ DLL R
Sbjct: 120 AAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK--------------------RK 159
Query: 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233
+ E+ + + + V T +E+ + G L R G + N++SSRSHAI I
Sbjct: 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNID 219
Query: 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLK-EGIHINR 292
L+ + K S+ K+ +DLAGSER T S + + +G +INR
Sbjct: 220 LKDINKNTSL-----------------GKIAFIDLAGSERGADTVSQNKQTQTDGANINR 262
Query: 293 GLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEE 352
LLAL I A+ +K H+P+RDS+LT++L+D G SK++MIA ISP E+
Sbjct: 263 SLLALKECIRAMDSDKN-----HIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQ 317
Query: 353 SLNTLKYANRARN-----IQNKPVVN 373
+LNTL+Y++R +N ++ KP+ N
Sbjct: 318 TLNTLRYSSRVKNKGNSKLEGKPIPN 343
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 127 bits (319), Expect = 3e-29, Method: Composition-based stats.
Identities = 86/275 (31%), Positives = 134/275 (48%), Gaps = 52/275 (18%)
Query: 8 CSVKVAVHVRPLIGDERAQGCK--------ECVAVTHGNPQVQIGTHSFTFDHVYGNGGS 59
CS+KV RPL E +G K E V + G P + FD V +
Sbjct: 6 CSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKP--------YVFDRVLPPN-T 56
Query: 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALF 119
++ C +V + +GYN T+ AYGQT SGKT+TM L + G+IP++ + +F
Sbjct: 57 TQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIF 116
Query: 120 NKIETLRHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTANGHAGKVSISGRPPIQIRE 179
+ I ++ +EF + VS+ EI +++RDLLD + + + E
Sbjct: 117 DHIYSMDENLEFHIKVSYFEIYLDKIRDLLDV-------------------SKTNLAVHE 157
Query: 180 SSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239
N V + G TE V++ +E+ +++G +R TNMN SSRSH+IF I ++Q
Sbjct: 158 DKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQ--- 214
Query: 240 LHSVSPDNGTPDEDMD-EEYFCAKLHLVDLAGSER 273
E+++ E+ KL+LVDLAGSE+
Sbjct: 215 ------------ENVETEKKLSGKLYLVDLAGSEK 237
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 4/86 (4%)
Query: 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINA 350
N+ L ALGNVISAL + K HVPYRDSK+TR+LQDSLGGN +T ++ C SP+ N
Sbjct: 1 NKSLSALGNVISALAEGTK----THVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNE 56
Query: 351 EESLNTLKYANRARNIQNKPVVNRDL 376
E+ +TL + RA+ I+N VN +L
Sbjct: 57 AETKSTLMFGQRAKTIKNTVSVNLEL 82
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
Query: 289 HINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADI 348
+IN+ L ALGNVISAL + K HVPYRDSK+TR+LQDSL GN +T ++ C SP+
Sbjct: 3 NINKSLSALGNVISALAEGTK----THVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVF 58
Query: 349 NAEESLNTLKYANRARNIQNKPVVNRDLIS 378
N E+ +TL + RA+ I+N VN +L +
Sbjct: 59 NEAETKSTLMFGQRAKTIKNTVSVNLELTA 88
>pdb|3BE8|A Chain A, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|3BE8|B Chain B, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|2WQZ|A Chain A, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|B Chain B, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|A Chain A, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|B Chain B, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 588
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 316 VPYRDSKLTRLLQDSLGGN--SKTVMIACISPADINAEESLN-TLKYANRARNIQNKPVV 372
V Y+ +K TR+L D +G N T M+ C+ + N +E + T+ A +I PV+
Sbjct: 258 VNYQPAKYTRILADKVGCNMLDTTDMVECLR--NKNYKELIQQTITPA--TYHIAFGPVI 313
Query: 373 NRDLISSDMQKLRQQLKYLQAEL 395
+ D+I D Q L +Q ++L ++
Sbjct: 314 DGDVIPDDPQILMEQGEFLNYDI 336
>pdb|3BBN|E Chain E, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 308
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 171 GRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230
G + +R ++ G +AG AV T+ EMA + +L + GS N N + +
Sbjct: 232 GAARVMLRPAAPGTGVIAGG---AVRTVLEMAGV--ENALGKQLGSNNALNNARAT---- 282
Query: 231 TITLEQMRKLHSVSPDNGTPDEDM 254
+ ++ MR+ V+ D G P E++
Sbjct: 283 IVAVQTMRQFSDVARDRGIPMEEL 306
>pdb|2ZUS|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUT|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUU|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUV|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUV|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUW|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
Length = 759
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 272 ERAKRTGSDGLRLKEGIHINRGLLALG-NVISALGDEKKRREGVHVPYRDSKLTRLLQDS 330
E A+ G+D +R +G H++ +LALG + +A + E + + ++ LL D
Sbjct: 21 ELAELWGADAIRNSDGTHLDEAVLALGKKIYNAYFPTRAHNEWITLHMDETPQVYLLTDR 80
Query: 331 LGGNSKTVMIACI 343
+ S TV I +
Sbjct: 81 ILAESDTVDIPLM 93
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98
+ +A LVDGL +G L G TG+GKT+T+
Sbjct: 19 QAIAKLVDGLRRGVKHQTLL-GATGTGKTFTI 49
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98
+ +A LVDGL +G L G TG+GKT+T+
Sbjct: 19 QAIAKLVDGLRRGVKHQTLL-GATGTGKTFTI 49
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And
Processing By Uvrb: Crystal Structure Of A UvrbDNA
COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And
Processing By Uvrb: Crystal Structure Of A UvrbDNA
COMPLEX
Length = 658
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98
+ +A LVDGL +G L G TG+GKT+T+
Sbjct: 19 QAIAKLVDGLRRGVKHQTLL-GATGTGKTFTI 49
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98
+ +A LVDGL +G L G TG+GKT+T+
Sbjct: 19 QAIAKLVDGLRRGVKHQTLL-GATGTGKTFTI 49
>pdb|2X1P|A Chain A, Gelsolin Nanobody
pdb|2X1P|B Chain B, Gelsolin Nanobody
pdb|2X1P|C Chain C, Gelsolin Nanobody
pdb|2X1P|D Chain D, Gelsolin Nanobody
Length = 127
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 175 IQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATG-----------STNMNNQS 223
+Q++ES G++ GS ++ G +A G S + +
Sbjct: 2 VQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYA 61
Query: 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFC-AKLHLVDLAGSERAKRTGSDG 281
+ FTI+++ + S+ DN PD+ Y+C A LH G++R+ S G
Sbjct: 62 DSAKGRFTISVDNAKNTVSLQMDNLNPDD--TAVYYCAADLHRPYGPGTQRSDEYDSWG 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,306,685
Number of Sequences: 62578
Number of extensions: 1122120
Number of successful extensions: 3042
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2725
Number of HSP's gapped (non-prelim): 125
length of query: 1036
length of database: 14,973,337
effective HSP length: 109
effective length of query: 927
effective length of database: 8,152,335
effective search space: 7557214545
effective search space used: 7557214545
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)