Query 001657
Match_columns 1036
No_of_seqs 415 out of 2034
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 4E-119 8E-124 1059.1 45.9 823 16-914 1-855 (913)
2 KOG0243 Kinesin-like protein [ 100.0 1.4E-88 3E-93 812.3 71.3 397 6-432 47-468 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 7E-91 1.5E-95 803.4 29.2 357 6-398 3-368 (574)
4 KOG0245 Kinesin-like protein [ 100.0 9.8E-90 2.1E-94 803.8 31.3 365 7-399 3-381 (1221)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 6.7E-85 1.5E-89 731.2 42.1 339 5-381 4-346 (607)
6 PLN03188 kinesin-12 family pro 100.0 9E-83 1.9E-87 767.7 34.9 354 7-394 97-468 (1320)
7 KOG0242 Kinesin-like protein [ 100.0 2.7E-79 5.8E-84 735.9 29.6 349 7-398 5-364 (675)
8 KOG0241 Kinesin-like protein [ 100.0 1.8E-78 3.9E-83 694.0 34.2 362 7-398 3-383 (1714)
9 cd01373 KISc_KLP2_like Kinesin 100.0 1.3E-78 2.7E-83 689.1 31.4 325 9-366 2-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 4.4E-78 9.6E-83 684.9 30.1 322 9-366 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 3.4E-76 7.4E-81 670.8 31.1 326 9-364 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 5.6E-76 1.2E-80 673.2 32.0 336 8-373 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.3E-75 2.8E-80 670.0 31.5 333 8-375 2-352 (352)
14 cd01372 KISc_KIF4 Kinesin moto 100.0 2.5E-75 5.4E-80 665.5 31.6 337 8-367 1-341 (341)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 5.5E-74 1.2E-78 651.0 30.2 323 9-366 2-333 (333)
16 cd01367 KISc_KIF2_like Kinesin 100.0 6E-74 1.3E-78 647.4 29.5 308 8-364 1-322 (322)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.4E-73 3E-78 646.7 31.5 320 8-366 2-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 1.5E-72 3.3E-77 635.5 28.3 308 9-364 1-319 (319)
19 cd01375 KISc_KIF9_like Kinesin 100.0 3.2E-72 6.9E-77 636.4 30.0 319 9-364 1-334 (334)
20 cd01374 KISc_CENP_E Kinesin mo 100.0 3.6E-72 7.8E-77 633.7 30.1 317 9-366 1-321 (321)
21 cd01366 KISc_C_terminal Kinesi 100.0 3.5E-70 7.6E-75 620.2 31.2 320 8-368 2-328 (329)
22 smart00129 KISc Kinesin motor, 100.0 4.1E-70 8.9E-75 621.6 30.9 327 9-373 1-335 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 1.3E-70 2.8E-75 657.9 25.5 327 7-374 313-648 (670)
24 KOG0247 Kinesin-like protein [ 100.0 1E-67 2.3E-72 605.5 35.9 334 8-374 31-444 (809)
25 KOG0246 Kinesin-like protein [ 100.0 3E-68 6.6E-73 593.9 26.4 324 5-371 205-546 (676)
26 PF00225 Kinesin: Kinesin moto 100.0 4.1E-68 9E-73 605.5 21.6 322 15-366 1-335 (335)
27 cd00106 KISc Kinesin motor dom 100.0 7E-67 1.5E-71 593.6 30.1 318 9-364 1-328 (328)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.8E-60 3.9E-65 569.4 28.6 320 8-374 22-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 3.4E-48 7.5E-53 404.5 17.4 179 64-345 8-186 (186)
30 KOG0161 Myosin class II heavy 100.0 5.8E-33 1.3E-37 356.0 47.4 481 367-930 826-1315(1930)
31 PF01576 Myosin_tail_1: Myosin 99.8 1.2E-20 2.5E-25 237.0 0.0 251 646-931 2-258 (859)
32 KOG0161 Myosin class II heavy 99.6 4.7E-10 1E-14 146.8 57.2 373 533-927 969-1368(1930)
33 PRK03918 chromosome segregatio 99.0 0.00011 2.4E-09 95.2 57.8 14 85-98 27-40 (880)
34 PRK02224 chromosome segregatio 99.0 0.00013 2.9E-09 94.4 55.7 16 83-98 25-40 (880)
35 PF01576 Myosin_tail_1: Myosin 98.9 3.9E-10 8.5E-15 142.6 0.0 348 566-933 119-485 (859)
36 COG1196 Smc Chromosome segrega 98.8 0.0014 3E-08 87.1 59.7 30 66-98 12-41 (1163)
37 PRK02224 chromosome segregatio 98.8 0.00037 8.1E-09 90.3 51.3 19 496-514 181-199 (880)
38 KOG4674 Uncharacterized conser 98.8 0.0012 2.7E-08 86.7 54.4 388 499-931 728-1135(1822)
39 TIGR00606 rad50 rad50. This fa 98.8 0.00075 1.6E-08 90.7 53.9 54 378-436 576-629 (1311)
40 KOG4674 Uncharacterized conser 98.8 0.0041 8.8E-08 82.1 58.3 269 535-823 689-985 (1822)
41 TIGR02168 SMC_prok_B chromosom 98.8 0.0026 5.6E-08 85.0 59.1 16 83-98 25-40 (1179)
42 PRK03918 chromosome segregatio 98.7 0.0029 6.3E-08 82.1 57.4 29 865-893 671-699 (880)
43 TIGR00606 rad50 rad50. This fa 98.7 0.00069 1.5E-08 91.0 52.5 174 575-767 826-1007(1311)
44 TIGR02168 SMC_prok_B chromosom 98.7 0.0045 9.8E-08 82.7 58.5 39 727-765 673-712 (1179)
45 PF07888 CALCOCO1: Calcium bin 98.7 0.00072 1.6E-08 80.0 44.0 56 856-911 406-461 (546)
46 KOG0612 Rho-associated, coiled 98.6 0.00042 9.2E-09 86.6 41.3 200 535-767 529-737 (1317)
47 KOG4643 Uncharacterized coiled 98.6 0.0031 6.8E-08 77.5 46.7 177 499-699 298-500 (1195)
48 TIGR02169 SMC_prok_A chromosom 98.5 0.015 3.3E-07 77.8 60.4 14 85-98 27-40 (1164)
49 PF12128 DUF3584: Protein of u 98.4 0.027 5.9E-07 75.2 57.8 94 497-591 315-408 (1201)
50 TIGR02169 SMC_prok_A chromosom 98.4 0.0063 1.4E-07 81.4 48.5 17 502-518 184-200 (1164)
51 PF00038 Filament: Intermediat 98.4 0.0059 1.3E-07 69.3 39.6 78 533-627 16-93 (312)
52 KOG0977 Nuclear envelope prote 98.3 0.001 2.2E-08 78.7 32.0 326 502-931 42-392 (546)
53 COG1196 Smc Chromosome segrega 98.3 0.062 1.3E-06 71.8 56.8 73 853-925 849-921 (1163)
54 KOG0971 Microtubule-associated 98.3 0.015 3.2E-07 70.9 40.3 125 797-923 411-546 (1243)
55 KOG4673 Transcription factor T 98.2 0.031 6.6E-07 66.4 40.6 35 527-561 401-435 (961)
56 PF12128 DUF3584: Protein of u 98.2 0.088 1.9E-06 70.5 52.2 18 81-98 17-34 (1201)
57 PF10174 Cast: RIM-binding pro 98.2 0.054 1.2E-06 67.8 55.2 66 842-907 517-588 (775)
58 PF10174 Cast: RIM-binding pro 98.2 0.058 1.3E-06 67.6 52.8 274 590-918 233-516 (775)
59 KOG0964 Structural maintenance 98.2 0.053 1.1E-06 67.1 44.6 178 500-742 228-409 (1200)
60 KOG4643 Uncharacterized coiled 98.1 0.036 7.8E-07 68.7 40.9 286 576-897 262-553 (1195)
61 PF07888 CALCOCO1: Calcium bin 98.1 0.05 1.1E-06 64.9 42.3 30 678-707 369-398 (546)
62 KOG0971 Microtubule-associated 98.1 0.068 1.5E-06 65.4 43.1 50 653-706 401-450 (1243)
63 PRK01156 chromosome segregatio 98.0 0.13 2.8E-06 67.1 60.2 16 83-98 25-40 (895)
64 KOG0996 Structural maintenance 98.0 0.11 2.3E-06 65.8 58.0 94 601-694 513-611 (1293)
65 COG5059 KIP1 Kinesin-like prot 98.0 1.1E-07 2.4E-12 115.4 -8.5 257 2-305 299-566 (568)
66 KOG0976 Rho/Rac1-interacting s 98.0 0.084 1.8E-06 63.7 51.2 62 595-656 277-338 (1265)
67 KOG0963 Transcription factor/C 98.0 0.074 1.6E-06 63.4 38.9 152 802-957 302-478 (629)
68 KOG0996 Structural maintenance 98.0 0.039 8.5E-07 69.5 37.9 78 836-913 518-595 (1293)
69 KOG0612 Rho-associated, coiled 97.9 0.14 3.1E-06 65.0 41.6 24 75-98 82-105 (1317)
70 PRK01156 chromosome segregatio 97.9 0.2 4.4E-06 65.3 56.0 44 580-623 348-391 (895)
71 KOG0964 Structural maintenance 97.9 0.031 6.7E-07 69.0 34.1 298 597-929 213-520 (1200)
72 KOG0977 Nuclear envelope prote 97.9 0.039 8.4E-07 65.8 34.3 63 495-561 56-118 (546)
73 PF00038 Filament: Intermediat 97.9 0.082 1.8E-06 60.1 36.1 124 496-627 19-142 (312)
74 KOG0995 Centromere-associated 97.8 0.18 3.9E-06 59.7 47.2 125 634-764 332-459 (581)
75 KOG0976 Rho/Rac1-interacting s 97.7 0.23 5E-06 60.1 50.3 37 616-652 280-316 (1265)
76 KOG4673 Transcription factor T 97.7 0.22 4.7E-06 59.6 43.9 70 639-708 723-792 (961)
77 PF15070 GOLGA2L5: Putative go 97.7 0.31 6.7E-06 60.1 47.4 247 497-765 45-314 (617)
78 KOG0933 Structural maintenance 97.7 0.34 7.4E-06 60.5 38.8 128 535-665 677-804 (1174)
79 PF09726 Macoilin: Transmembra 97.6 0.023 5E-07 70.7 28.1 98 606-707 422-522 (697)
80 PRK04863 mukB cell division pr 97.6 0.82 1.8E-05 61.8 43.3 17 82-98 28-44 (1486)
81 PF05701 WEMBL: Weak chloropla 97.5 0.51 1.1E-05 57.5 52.8 37 729-765 286-323 (522)
82 PF09755 DUF2046: Uncharacteri 97.5 0.19 4.1E-06 55.8 29.3 56 644-699 225-280 (310)
83 PF09726 Macoilin: Transmembra 97.4 0.049 1.1E-06 67.9 27.3 110 637-769 541-654 (697)
84 PRK04863 mukB cell division pr 97.4 1.3 2.8E-05 60.0 43.4 159 499-668 311-476 (1486)
85 PRK11637 AmiB activator; Provi 97.3 0.13 2.8E-06 61.3 29.0 34 976-1016 393-427 (428)
86 PF00261 Tropomyosin: Tropomyo 97.3 0.14 3.1E-06 55.8 26.9 96 533-632 132-227 (237)
87 PRK11637 AmiB activator; Provi 97.3 0.31 6.7E-06 58.0 31.0 40 635-674 206-245 (428)
88 KOG0963 Transcription factor/C 97.2 0.81 1.8E-05 54.9 35.0 134 608-765 248-397 (629)
89 KOG0994 Extracellular matrix g 97.2 1.2 2.5E-05 56.5 47.2 82 352-444 1176-1257(1758)
90 PF05557 MAD: Mitotic checkpoi 97.2 0.002 4.3E-08 81.5 11.7 125 795-930 502-645 (722)
91 PHA02562 46 endonuclease subun 97.1 0.35 7.7E-06 59.5 30.8 46 857-902 362-407 (562)
92 PRK11281 hypothetical protein; 97.1 1.5 3.3E-05 57.6 36.8 59 644-702 195-256 (1113)
93 KOG1029 Endocytic adaptor prot 97.1 1.4 2.9E-05 53.9 35.3 44 649-692 473-516 (1118)
94 COG4942 Membrane-bound metallo 97.0 0.51 1.1E-05 54.8 28.0 32 666-697 210-241 (420)
95 PRK04778 septation ring format 96.8 2.1 4.6E-05 52.9 41.9 22 540-561 254-275 (569)
96 PRK04778 septation ring format 96.8 2.4 5.3E-05 52.4 43.2 60 645-710 253-312 (569)
97 PF05557 MAD: Mitotic checkpoi 96.7 0.00037 8E-09 88.0 0.0 99 839-937 336-434 (722)
98 KOG4593 Mitotic checkpoint pro 96.7 2.5 5.5E-05 51.5 40.3 59 639-697 163-221 (716)
99 PRK10929 putative mechanosensi 96.7 4 8.6E-05 53.7 40.6 57 647-703 179-238 (1109)
100 KOG0933 Structural maintenance 96.7 3.2 7E-05 52.4 48.3 70 861-930 816-885 (1174)
101 COG4942 Membrane-bound metallo 96.6 1.2 2.6E-05 51.7 27.3 51 536-590 74-124 (420)
102 PHA02562 46 endonuclease subun 96.6 2.9 6.2E-05 51.6 33.5 17 82-98 28-44 (562)
103 COG0419 SbcC ATPase involved i 96.6 4.4 9.6E-05 53.1 53.6 19 80-98 24-42 (908)
104 KOG0250 DNA repair protein RAD 96.6 3.9 8.5E-05 52.4 52.4 97 579-677 373-472 (1074)
105 COG1579 Zn-ribbon protein, pos 96.5 0.31 6.7E-06 52.7 20.4 117 577-698 58-174 (239)
106 KOG0978 E3 ubiquitin ligase in 96.5 3.8 8.2E-05 50.7 46.6 219 678-942 428-655 (698)
107 KOG0995 Centromere-associated 96.4 3.2 7E-05 49.6 42.2 32 491-522 283-314 (581)
108 KOG1029 Endocytic adaptor prot 96.4 3.8 8.3E-05 50.2 35.4 30 795-824 527-556 (1118)
109 KOG0018 Structural maintenance 96.3 5.3 0.00011 51.0 35.3 84 606-689 224-312 (1141)
110 PF05701 WEMBL: Weak chloropla 96.2 4.9 0.00011 49.1 55.7 166 533-698 170-348 (522)
111 COG0556 UvrB Helicase subunit 96.1 0.003 6.5E-08 73.6 2.6 94 46-145 3-100 (663)
112 PF10481 CENP-F_N: Cenp-F N-te 96.1 0.37 8.1E-06 52.0 17.7 164 577-765 17-190 (307)
113 PF14915 CCDC144C: CCDC144C pr 96.1 3 6.6E-05 46.1 33.5 201 653-911 43-251 (305)
114 KOG0946 ER-Golgi vesicle-tethe 96.0 4.4 9.5E-05 50.1 27.6 31 598-628 844-874 (970)
115 PF09755 DUF2046: Uncharacteri 95.8 4.2 9E-05 45.5 28.8 22 570-591 170-191 (310)
116 PF15066 CAGE1: Cancer-associa 95.8 5.2 0.00011 46.6 26.8 120 533-663 388-507 (527)
117 COG1579 Zn-ribbon protein, pos 95.8 1.8 4E-05 46.9 21.5 20 499-518 35-54 (239)
118 COG0419 SbcC ATPase involved i 95.7 11 0.00023 49.6 59.3 25 724-748 526-551 (908)
119 PF05667 DUF812: Protein of un 95.7 8.2 0.00018 47.7 29.6 41 725-765 486-526 (594)
120 KOG0962 DNA repair protein RAD 95.6 12 0.00026 49.3 50.5 47 292-343 107-156 (1294)
121 KOG0999 Microtubule-associated 95.5 7.4 0.00016 46.1 43.1 152 499-667 12-189 (772)
122 KOG0980 Actin-binding protein 95.4 11 0.00023 47.4 35.3 56 573-631 353-408 (980)
123 KOG0980 Actin-binding protein 95.4 11 0.00024 47.3 39.9 142 530-686 360-504 (980)
124 PF00261 Tropomyosin: Tropomyo 95.3 5.4 0.00012 43.6 26.7 54 381-439 3-56 (237)
125 PF15619 Lebercilin: Ciliary p 95.2 2.5 5.5E-05 44.6 19.8 54 646-699 123-183 (194)
126 COG5185 HEC1 Protein involved 95.1 8.8 0.00019 44.7 34.5 106 571-680 257-362 (622)
127 PF05483 SCP-1: Synaptonemal c 94.9 13 0.00028 45.4 59.7 193 501-698 239-447 (786)
128 PF05622 HOOK: HOOK protein; 94.8 0.0076 1.6E-07 76.2 0.0 12 812-823 483-494 (713)
129 COG4372 Uncharacterized protei 94.8 9.4 0.0002 43.4 31.4 81 293-395 8-90 (499)
130 COG4372 Uncharacterized protei 94.8 9.6 0.00021 43.4 28.9 31 598-628 161-191 (499)
131 PF05622 HOOK: HOOK protein; 94.7 0.009 2E-07 75.5 0.0 13 956-968 685-697 (713)
132 PF05911 DUF869: Plant protein 94.7 18 0.00039 46.0 28.7 122 499-628 21-153 (769)
133 PF05010 TACC: Transforming ac 94.4 8.3 0.00018 41.1 23.4 142 499-669 34-182 (207)
134 PF15070 GOLGA2L5: Putative go 94.4 18 0.00039 45.0 51.8 89 531-622 118-215 (617)
135 PRK09039 hypothetical protein; 94.2 7.8 0.00017 44.8 22.5 79 531-627 77-155 (343)
136 PF05010 TACC: Transforming ac 94.1 9.7 0.00021 40.6 27.2 108 584-698 79-186 (207)
137 PRK09039 hypothetical protein; 93.9 6.8 0.00015 45.2 21.3 40 632-671 128-167 (343)
138 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.6 6.8 0.00015 38.7 18.0 48 650-697 82-129 (132)
139 PF12718 Tropomyosin_1: Tropom 93.6 7.5 0.00016 39.0 18.3 43 863-905 83-125 (143)
140 PF15066 CAGE1: Cancer-associa 93.6 19 0.0004 42.2 27.9 76 607-694 409-485 (527)
141 COG2805 PilT Tfp pilus assembl 93.4 0.04 8.8E-07 60.7 2.0 32 67-98 111-142 (353)
142 KOG0250 DNA repair protein RAD 93.3 34 0.00073 44.4 48.1 30 794-823 659-688 (1074)
143 COG1340 Uncharacterized archae 93.3 17 0.00036 40.7 34.5 44 612-655 30-76 (294)
144 PF00308 Bac_DnaA: Bacterial d 93.1 0.04 8.7E-07 59.4 1.5 49 46-98 3-51 (219)
145 PF09787 Golgin_A5: Golgin sub 93.1 27 0.00059 42.6 32.7 89 611-699 290-381 (511)
146 PF06160 EzrA: Septation ring 93.0 30 0.00065 42.8 42.4 53 502-561 75-127 (560)
147 PF04849 HAP1_N: HAP1 N-termin 92.9 19 0.00041 40.5 29.0 138 533-699 165-302 (306)
148 KOG4809 Rab6 GTPase-interactin 92.9 25 0.00055 41.9 29.1 141 527-669 420-570 (654)
149 KOG2129 Uncharacterized conser 92.9 22 0.00047 41.0 23.3 38 404-441 42-79 (552)
150 PRK06893 DNA replication initi 92.9 0.044 9.5E-07 59.5 1.3 46 46-98 11-56 (229)
151 PF14988 DUF4515: Domain of un 92.9 15 0.00033 39.2 23.7 70 578-650 54-123 (206)
152 PF14662 CCDC155: Coiled-coil 92.8 11 0.00024 39.3 18.2 69 861-929 103-171 (193)
153 PF14662 CCDC155: Coiled-coil 92.1 17 0.00037 38.0 26.4 37 861-897 152-188 (193)
154 PF05667 DUF812: Protein of un 91.7 43 0.00093 41.6 35.0 17 890-906 573-589 (594)
155 KOG2129 Uncharacterized conser 91.5 32 0.00068 39.7 24.9 103 596-698 159-271 (552)
156 KOG0946 ER-Golgi vesicle-tethe 91.2 49 0.0011 41.5 28.0 47 853-899 848-896 (970)
157 KOG0999 Microtubule-associated 91.2 39 0.00085 40.4 46.0 30 737-766 346-375 (772)
158 PF08317 Spc7: Spc7 kinetochor 91.1 18 0.0004 41.4 19.9 14 578-591 184-197 (325)
159 PRK06620 hypothetical protein; 91.0 0.08 1.7E-06 56.9 0.7 49 45-98 10-61 (214)
160 PF06160 EzrA: Septation ring 90.9 49 0.0011 40.9 48.9 52 861-912 459-510 (560)
161 COG3883 Uncharacterized protei 90.8 30 0.00065 38.2 29.9 51 861-911 184-234 (265)
162 TIGR03007 pepcterm_ChnLen poly 90.7 39 0.00084 41.1 23.6 108 500-607 166-284 (498)
163 TIGR03185 DNA_S_dndD DNA sulfu 90.7 57 0.0012 41.2 38.7 16 83-98 30-45 (650)
164 COG3883 Uncharacterized protei 90.5 32 0.00068 38.0 24.1 41 628-668 177-217 (265)
165 PF04849 HAP1_N: HAP1 N-termin 90.3 36 0.00078 38.4 27.0 66 634-703 206-271 (306)
166 PF13514 AAA_27: AAA domain 90.1 84 0.0018 42.3 55.9 57 381-439 152-208 (1111)
167 KOG0994 Extracellular matrix g 89.8 76 0.0016 41.4 39.4 31 665-695 1664-1694(1758)
168 PRK09087 hypothetical protein; 89.7 0.14 3E-06 55.5 1.2 46 46-98 16-61 (226)
169 COG1340 Uncharacterized archae 89.6 39 0.00085 37.8 33.2 31 533-563 46-76 (294)
170 PF09730 BicD: Microtubule-ass 89.6 68 0.0015 40.5 42.4 37 729-765 284-321 (717)
171 PF15619 Lebercilin: Ciliary p 89.6 31 0.00067 36.6 25.4 59 611-669 52-110 (194)
172 COG2804 PulE Type II secretory 89.3 0.16 3.5E-06 60.1 1.3 31 70-100 247-277 (500)
173 PF04111 APG6: Autophagy prote 89.3 6.5 0.00014 44.8 14.1 28 534-561 42-69 (314)
174 PF10473 CENP-F_leu_zip: Leuci 89.2 26 0.00056 35.1 16.6 60 498-562 20-79 (140)
175 KOG1853 LIS1-interacting prote 89.0 37 0.0008 36.7 18.8 15 501-515 51-65 (333)
176 TIGR03185 DNA_S_dndD DNA sulfu 89.0 75 0.0016 40.1 37.3 64 604-667 225-288 (650)
177 PRK14086 dnaA chromosomal repl 88.9 0.14 3E-06 62.7 0.4 49 46-98 283-331 (617)
178 KOG0804 Cytoplasmic Zn-finger 88.8 8.9 0.00019 44.6 14.5 39 193-237 120-159 (493)
179 PF09728 Taxilin: Myosin-like 88.8 48 0.001 37.8 34.0 62 617-678 203-274 (309)
180 KOG1850 Myosin-like coiled-coi 88.8 45 0.00096 37.4 40.1 81 865-960 290-372 (391)
181 KOG1003 Actin filament-coating 88.8 33 0.00072 35.9 21.0 108 501-624 80-187 (205)
182 TIGR01843 type_I_hlyD type I s 88.5 58 0.0013 38.3 23.5 19 678-696 251-269 (423)
183 PF12325 TMF_TATA_bd: TATA ele 88.5 16 0.00034 35.6 14.0 88 534-629 29-116 (120)
184 KOG0018 Structural maintenance 88.3 94 0.002 40.4 36.5 33 588-620 255-287 (1141)
185 TIGR01005 eps_transp_fam exopo 88.2 32 0.00069 44.2 21.1 62 500-561 199-263 (754)
186 PF10168 Nup88: Nuclear pore c 88.0 25 0.00055 44.6 19.3 17 170-186 294-310 (717)
187 PF15294 Leu_zip: Leucine zipp 87.3 15 0.00033 40.7 14.7 22 540-561 130-151 (278)
188 PF14988 DUF4515: Domain of un 87.2 46 0.00099 35.6 24.5 82 527-613 39-125 (206)
189 PRK05642 DNA replication initi 87.1 0.28 6E-06 53.5 1.3 45 46-98 14-62 (234)
190 PF12718 Tropomyosin_1: Tropom 87.0 36 0.00078 34.2 19.7 11 753-763 30-40 (143)
191 PRK08727 hypothetical protein; 87.0 0.26 5.5E-06 53.7 1.0 44 46-98 14-58 (233)
192 PRK14088 dnaA chromosomal repl 86.9 0.21 4.6E-06 59.6 0.3 49 45-98 99-147 (440)
193 KOG0804 Cytoplasmic Zn-finger 86.8 15 0.00032 42.9 14.7 23 539-561 365-387 (493)
194 PF15254 CCDC14: Coiled-coil d 86.6 49 0.0011 41.3 19.6 65 497-561 396-467 (861)
195 PRK13729 conjugal transfer pil 86.5 2.9 6.3E-05 49.4 9.2 30 946-976 158-187 (475)
196 KOG1853 LIS1-interacting prote 86.2 54 0.0012 35.5 22.5 70 605-692 55-124 (333)
197 KOG0962 DNA repair protein RAD 86.2 1.4E+02 0.003 40.1 52.1 37 729-765 516-552 (1294)
198 COG1474 CDC6 Cdc6-related prot 86.1 0.73 1.6E-05 53.6 4.2 28 71-98 31-59 (366)
199 PF08614 ATG16: Autophagy prot 86.0 9.4 0.0002 40.3 12.1 22 676-697 161-182 (194)
200 PF13851 GAS: Growth-arrest sp 85.9 52 0.0011 35.0 22.7 143 497-669 29-171 (201)
201 KOG4403 Cell surface glycoprot 85.8 65 0.0014 37.5 18.8 41 722-762 334-375 (575)
202 PF04851 ResIII: Type III rest 85.6 0.35 7.6E-06 49.4 1.2 31 69-99 12-43 (184)
203 PF10146 zf-C4H2: Zinc finger- 85.4 28 0.0006 37.9 15.4 55 536-602 2-56 (230)
204 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.3 41 0.00088 33.3 16.4 46 648-693 73-118 (132)
205 PF09731 Mitofilin: Mitochondr 85.3 1.1E+02 0.0023 38.1 24.3 14 137-150 24-37 (582)
206 PF11559 ADIP: Afadin- and alp 85.2 29 0.00063 35.0 14.8 20 650-669 128-147 (151)
207 COG0593 DnaA ATPase involved i 85.1 0.36 7.8E-06 56.4 1.1 50 45-98 81-130 (408)
208 PRK08084 DNA replication initi 85.1 0.4 8.6E-06 52.3 1.3 46 45-98 16-62 (235)
209 PF10168 Nup88: Nuclear pore c 84.9 48 0.001 42.2 19.5 32 530-561 560-591 (717)
210 PRK12377 putative replication 84.8 0.38 8.2E-06 52.9 1.0 49 47-98 70-118 (248)
211 PF05483 SCP-1: Synaptonemal c 84.8 1.1E+02 0.0024 37.9 53.6 125 571-699 398-525 (786)
212 PRK00149 dnaA chromosomal repl 84.7 0.36 7.8E-06 57.9 0.8 49 46-98 117-165 (450)
213 PF10481 CENP-F_N: Cenp-F N-te 84.5 14 0.00031 40.2 12.4 27 535-561 18-44 (307)
214 TIGR03420 DnaA_homol_Hda DnaA 84.4 0.44 9.5E-06 51.1 1.2 46 46-98 10-55 (226)
215 PF00769 ERM: Ezrin/radixin/mo 84.0 50 0.0011 36.3 17.0 32 638-669 65-96 (246)
216 PF08317 Spc7: Spc7 kinetochor 83.9 61 0.0013 37.2 18.5 18 499-516 153-170 (325)
217 smart00787 Spc7 Spc7 kinetocho 83.8 80 0.0017 36.0 18.9 18 611-628 234-251 (312)
218 TIGR00631 uvrb excinuclease AB 83.6 0.47 1E-05 59.3 1.2 93 48-146 2-98 (655)
219 PF13851 GAS: Growth-arrest sp 83.5 66 0.0014 34.3 22.2 18 540-557 112-129 (201)
220 PF09730 BicD: Microtubule-ass 83.3 1.4E+02 0.003 37.9 55.4 100 644-766 362-462 (717)
221 PRK08116 hypothetical protein; 83.3 0.41 9E-06 53.2 0.5 50 46-98 80-131 (268)
222 cd00009 AAA The AAA+ (ATPases 83.2 0.58 1.3E-05 45.3 1.5 29 70-98 8-36 (151)
223 PRK06526 transposase; Provisio 83.2 0.48 1E-05 52.3 0.9 16 84-99 101-116 (254)
224 KOG1899 LAR transmembrane tyro 83.1 68 0.0015 39.1 18.1 100 597-699 190-300 (861)
225 PRK14087 dnaA chromosomal repl 83.1 0.44 9.5E-06 57.1 0.6 48 47-98 111-158 (450)
226 PF13245 AAA_19: Part of AAA d 82.9 0.64 1.4E-05 41.3 1.4 25 73-98 3-27 (76)
227 PF04912 Dynamitin: Dynamitin 82.7 51 0.0011 38.8 17.5 88 605-692 291-387 (388)
228 TIGR01420 pilT_fam pilus retra 82.6 0.86 1.9E-05 52.6 2.8 33 66-98 107-139 (343)
229 PF04582 Reo_sigmaC: Reovirus 82.5 1.3 2.8E-05 49.8 4.0 141 794-951 33-174 (326)
230 KOG0979 Structural maintenance 82.4 1.7E+02 0.0036 38.1 27.1 91 599-689 703-800 (1072)
231 COG5008 PilU Tfp pilus assembl 82.4 0.89 1.9E-05 49.5 2.5 44 68-111 114-159 (375)
232 PF04156 IncA: IncA protein; 82.3 39 0.00084 35.4 14.9 21 867-887 130-150 (191)
233 PRK08903 DnaA regulatory inact 82.0 0.64 1.4E-05 50.1 1.4 47 46-98 13-59 (227)
234 TIGR00362 DnaA chromosomal rep 82.0 0.64 1.4E-05 54.9 1.4 49 46-98 105-153 (405)
235 PRK07952 DNA replication prote 81.5 0.58 1.2E-05 51.3 0.7 50 46-98 67-116 (244)
236 TIGR01005 eps_transp_fam exopo 81.4 1.7E+02 0.0037 37.6 26.6 75 616-693 288-365 (754)
237 KOG4302 Microtubule-associated 81.4 1.6E+02 0.0034 37.0 29.2 29 795-823 225-253 (660)
238 TIGR01000 bacteriocin_acc bact 81.3 1.3E+02 0.0028 36.2 24.0 22 677-698 288-309 (457)
239 PRK00411 cdc6 cell division co 81.2 0.76 1.7E-05 53.8 1.7 20 79-98 53-72 (394)
240 PF04111 APG6: Autophagy prote 81.1 18 0.00038 41.3 12.5 25 537-561 11-35 (314)
241 PF10212 TTKRSYEDQ: Predicted 81.1 1.4E+02 0.003 36.2 25.4 110 288-425 213-329 (518)
242 PRK10436 hypothetical protein; 80.9 0.71 1.5E-05 55.3 1.3 28 72-99 209-236 (462)
243 KOG4593 Mitotic checkpoint pro 80.8 1.6E+02 0.0034 36.7 49.7 61 841-901 435-499 (716)
244 TIGR02928 orc1/cdc6 family rep 80.4 0.7 1.5E-05 53.5 1.0 27 72-98 30-57 (365)
245 TIGR02533 type_II_gspE general 80.4 0.8 1.7E-05 55.3 1.5 28 72-99 233-260 (486)
246 TIGR02538 type_IV_pilB type IV 80.2 0.74 1.6E-05 56.7 1.2 28 72-99 307-334 (564)
247 PLN02939 transferase, transfer 80.1 2.1E+02 0.0045 37.6 24.8 140 537-696 252-399 (977)
248 cd00046 DEXDc DEAD-like helica 79.9 0.72 1.6E-05 44.1 0.8 15 84-98 3-17 (144)
249 PF00437 T2SE: Type II/IV secr 79.8 0.99 2.1E-05 50.1 1.9 32 67-98 110-144 (270)
250 cd01131 PilT Pilus retraction 79.8 0.71 1.5E-05 48.9 0.8 18 81-98 1-18 (198)
251 PF15254 CCDC14: Coiled-coil d 79.7 37 0.0008 42.3 14.9 46 350-395 365-410 (861)
252 PRK10884 SH3 domain-containing 79.7 22 0.00047 38.0 11.8 18 577-594 92-109 (206)
253 KOG1899 LAR transmembrane tyro 79.6 1.4E+02 0.0031 36.5 19.1 46 605-668 170-215 (861)
254 PF13401 AAA_22: AAA domain; P 79.5 0.68 1.5E-05 44.8 0.4 18 81-98 4-21 (131)
255 TIGR02524 dot_icm_DotB Dot/Icm 79.1 1 2.2E-05 52.3 1.7 26 73-98 126-151 (358)
256 TIGR02525 plasmid_TraJ plasmid 79.0 1 2.2E-05 52.5 1.7 27 71-98 140-166 (372)
257 TIGR03319 YmdA_YtgF conserved 78.5 1.2E+02 0.0027 37.1 19.2 39 985-1031 391-429 (514)
258 PF00769 ERM: Ezrin/radixin/mo 78.3 74 0.0016 35.0 15.8 23 601-623 74-96 (246)
259 PF01935 DUF87: Domain of unkn 78.3 0.86 1.9E-05 49.1 0.8 18 81-98 23-40 (229)
260 PF03962 Mnd1: Mnd1 family; I 78.1 66 0.0014 33.9 14.7 30 532-561 66-95 (188)
261 smart00382 AAA ATPases associa 78.0 0.89 1.9E-05 43.4 0.7 18 81-98 2-19 (148)
262 PF00270 DEAD: DEAD/DEAH box h 77.6 1.2 2.5E-05 45.1 1.5 25 72-98 7-31 (169)
263 PF13604 AAA_30: AAA domain; P 77.5 1.2 2.6E-05 47.1 1.6 28 71-98 8-35 (196)
264 PF08826 DMPK_coil: DMPK coile 77.1 29 0.00062 29.7 9.3 41 848-888 20-60 (61)
265 PF09731 Mitofilin: Mitochondr 77.1 2E+02 0.0043 35.8 21.9 29 670-698 368-396 (582)
266 PRK10884 SH3 domain-containing 76.5 37 0.00081 36.3 12.4 29 532-560 122-150 (206)
267 PF06785 UPF0242: Uncharacteri 76.3 77 0.0017 35.8 14.8 51 649-699 128-178 (401)
268 PRK06835 DNA replication prote 76.2 1.3 2.9E-05 50.7 1.6 28 70-98 173-200 (329)
269 COG2433 Uncharacterized conser 76.0 44 0.00095 40.7 13.8 31 109-139 164-194 (652)
270 COG2433 Uncharacterized conser 75.9 98 0.0021 37.9 16.6 56 611-667 445-500 (652)
271 PF11932 DUF3450: Protein of u 75.6 1.1E+02 0.0024 33.6 16.4 36 962-997 178-214 (251)
272 PF14992 TMCO5: TMCO5 family 75.6 1.4E+02 0.0031 33.3 17.6 39 534-572 62-100 (280)
273 TIGR03017 EpsF chain length de 75.3 1.8E+02 0.004 34.5 22.3 93 500-592 176-275 (444)
274 PF12846 AAA_10: AAA-like doma 75.3 1.1 2.5E-05 49.7 0.7 18 81-98 1-18 (304)
275 cd01129 PulE-GspE PulE/GspE Th 75.3 1.4 3.1E-05 48.8 1.5 27 72-98 71-97 (264)
276 PRK08939 primosomal protein Dn 75.2 0.89 1.9E-05 51.6 -0.2 50 48-99 124-174 (306)
277 PF10498 IFT57: Intra-flagella 75.1 25 0.00054 40.8 11.5 89 841-932 236-324 (359)
278 PF06785 UPF0242: Uncharacteri 74.7 1.2E+02 0.0026 34.4 15.7 7 541-547 74-80 (401)
279 PF05673 DUF815: Protein of un 74.1 2.5 5.3E-05 46.1 2.9 46 47-98 23-69 (249)
280 PF01637 Arch_ATPase: Archaeal 73.5 1.4 3.1E-05 46.8 0.9 29 70-98 9-37 (234)
281 PTZ00112 origin recognition co 73.3 3.5 7.6E-05 52.3 4.2 28 71-98 769-798 (1164)
282 smart00053 DYNc Dynamin, GTPas 73.2 4.2 9.1E-05 44.5 4.5 15 84-98 29-43 (240)
283 PRK08181 transposase; Validate 73.1 1.4 3E-05 49.1 0.7 20 78-99 105-124 (269)
284 KOG0926 DEAH-box RNA helicase 72.5 2.3 5.1E-05 52.5 2.4 19 80-98 270-288 (1172)
285 PF00448 SRP54: SRP54-type pro 72.5 1.4 3E-05 46.7 0.5 16 83-98 3-18 (196)
286 TIGR02782 TrbB_P P-type conjug 72.4 1.8 3.8E-05 49.1 1.4 28 70-98 122-149 (299)
287 PRK12704 phosphodiesterase; Pr 72.0 1.9E+02 0.0041 35.5 18.6 25 993-1017 381-405 (520)
288 PRK12422 chromosomal replicati 71.8 1.9 4.1E-05 51.6 1.5 50 45-98 105-158 (445)
289 PF09304 Cortex-I_coil: Cortex 71.7 59 0.0013 30.8 10.8 84 595-707 2-85 (107)
290 PF12325 TMF_TATA_bd: TATA ele 71.6 1E+02 0.0023 30.0 13.1 25 798-822 18-42 (120)
291 PRK06921 hypothetical protein; 71.4 1.5 3.2E-05 48.8 0.4 19 80-98 116-134 (266)
292 PF07798 DUF1640: Protein of u 71.2 1.3E+02 0.0029 31.2 15.4 77 537-622 75-151 (177)
293 PF10146 zf-C4H2: Zinc finger- 71.0 93 0.002 33.9 13.9 39 619-664 45-83 (230)
294 PF13207 AAA_17: AAA domain; P 70.8 1.7 3.7E-05 41.5 0.7 16 83-98 1-16 (121)
295 PF14915 CCDC144C: CCDC144C pr 70.7 1.9E+02 0.004 32.6 35.8 74 588-668 98-171 (305)
296 PF13479 AAA_24: AAA domain 70.5 1.8 3.8E-05 46.4 0.8 19 81-99 3-21 (213)
297 PF00004 AAA: ATPase family as 70.3 1.8 3.9E-05 41.7 0.7 15 84-98 1-15 (132)
298 PF15450 DUF4631: Domain of un 70.3 2.5E+02 0.0055 33.9 45.2 46 845-890 397-442 (531)
299 PRK13894 conjugal transfer ATP 70.2 2.1 4.5E-05 49.0 1.3 27 71-98 139-165 (319)
300 KOG2991 Splicing regulator [RN 70.2 77 0.0017 34.5 12.6 48 382-429 187-234 (330)
301 PF13191 AAA_16: AAA ATPase do 70.1 1.5 3.2E-05 45.1 0.1 22 77-98 20-41 (185)
302 PRK03947 prefoldin subunit alp 69.8 89 0.0019 31.0 12.8 34 872-905 99-132 (140)
303 KOG0243 Kinesin-like protein [ 69.6 3.6E+02 0.0079 35.5 36.1 68 631-698 487-557 (1041)
304 PF08614 ATG16: Autophagy prot 69.6 29 0.00064 36.6 9.8 54 860-913 123-176 (194)
305 PLN03229 acetyl-coenzyme A car 69.4 3.2E+02 0.0069 34.7 24.7 40 382-421 432-471 (762)
306 PF01695 IstB_IS21: IstB-like 69.1 2.3 5.1E-05 44.2 1.3 30 69-98 35-64 (178)
307 KOG4809 Rab6 GTPase-interactin 68.8 2.7E+02 0.0059 33.7 35.9 78 598-675 313-393 (654)
308 PF07111 HCR: Alpha helical co 68.5 3.1E+02 0.0068 34.3 60.2 93 795-888 520-617 (739)
309 PF06120 Phage_HK97_TLTM: Tail 67.9 2.2E+02 0.0048 32.3 17.9 61 501-561 47-107 (301)
310 PF13086 AAA_11: AAA domain; P 67.8 2.5 5.3E-05 44.9 1.2 25 73-98 10-34 (236)
311 cd01130 VirB11-like_ATPase Typ 67.7 2.6 5.7E-05 44.0 1.4 29 69-98 14-42 (186)
312 PF09787 Golgin_A5: Golgin sub 67.7 3E+02 0.0065 33.7 34.0 44 893-936 397-440 (511)
313 COG5185 HEC1 Protein involved 67.2 2.7E+02 0.0059 33.1 35.7 59 500-560 262-320 (622)
314 PF02562 PhoH: PhoH-like prote 67.1 3 6.5E-05 44.5 1.6 25 72-98 12-36 (205)
315 PRK13833 conjugal transfer pro 66.9 2.7 5.8E-05 48.0 1.3 27 71-98 135-161 (323)
316 KOG0992 Uncharacterized conser 66.7 2.9E+02 0.0062 33.2 33.8 22 746-767 233-254 (613)
317 COG1484 DnaC DNA replication p 66.5 2.7 5.8E-05 46.5 1.2 34 62-98 89-122 (254)
318 PRK06547 hypothetical protein; 66.4 3.2 6.9E-05 43.0 1.7 30 69-98 3-32 (172)
319 PF00910 RNA_helicase: RNA hel 66.3 4.6 0.0001 38.2 2.6 15 84-98 1-15 (107)
320 PHA02544 44 clamp loader, smal 66.2 2.6 5.7E-05 47.7 1.1 21 78-98 39-60 (316)
321 smart00787 Spc7 Spc7 kinetocho 66.2 2.4E+02 0.0053 32.2 18.7 14 578-591 179-192 (312)
322 PF10186 Atg14: UV radiation r 66.0 2.2E+02 0.0048 31.6 20.3 26 536-561 21-46 (302)
323 TIGR02903 spore_lon_C ATP-depe 66.0 2.5 5.5E-05 52.7 0.9 43 47-98 150-192 (615)
324 TIGR03752 conj_TIGR03752 integ 65.7 56 0.0012 38.9 11.7 88 861-948 74-162 (472)
325 PF00580 UvrD-helicase: UvrD/R 65.7 2.8 6E-05 46.9 1.1 22 77-98 9-30 (315)
326 KOG0953 Mitochondrial RNA heli 65.6 4.8 0.0001 48.1 3.0 43 83-125 193-238 (700)
327 PF11932 DUF3450: Protein of u 65.6 1.3E+02 0.0028 33.1 14.2 40 602-641 77-119 (251)
328 PF02841 GBP_C: Guanylate-bind 65.5 1.6E+02 0.0034 33.3 15.2 123 487-622 175-297 (297)
329 PF10211 Ax_dynein_light: Axon 65.5 1.5E+02 0.0032 31.3 13.8 28 533-560 64-91 (189)
330 KOG4360 Uncharacterized coiled 65.4 1.8E+02 0.004 34.8 15.4 62 605-670 222-283 (596)
331 COG1201 Lhr Lhr-like helicases 65.4 5.9 0.00013 50.4 3.9 59 72-144 30-88 (814)
332 COG4962 CpaF Flp pilus assembl 65.3 2.9 6.3E-05 47.6 1.2 78 70-153 163-270 (355)
333 PTZ00361 26 proteosome regulat 65.3 6.7 0.00015 46.8 4.3 42 83-124 219-274 (438)
334 TIGR03015 pepcterm_ATPase puta 65.3 3.6 7.7E-05 45.3 1.9 22 77-98 39-60 (269)
335 PRK12402 replication factor C 65.0 3.1 6.8E-05 47.4 1.4 21 78-98 33-53 (337)
336 PF07798 DUF1640: Protein of u 64.6 1.8E+02 0.004 30.2 15.9 34 643-676 108-141 (177)
337 KOG2373 Predicted mitochondria 64.0 3.1 6.7E-05 46.9 1.1 27 71-98 261-290 (514)
338 COG4026 Uncharacterized protei 64.0 74 0.0016 33.9 10.8 70 862-931 137-206 (290)
339 KOG0978 E3 ubiquitin ligase in 64.0 3.9E+02 0.0085 33.8 52.8 170 738-933 455-625 (698)
340 KOG0340 ATP-dependent RNA heli 63.8 12 0.00027 42.5 5.6 28 71-100 36-63 (442)
341 PF06818 Fez1: Fez1; InterPro 63.8 2.1E+02 0.0045 30.5 15.5 125 610-750 4-158 (202)
342 PRK13900 type IV secretion sys 63.6 3.6 7.8E-05 47.3 1.5 27 71-98 151-177 (332)
343 smart00487 DEXDc DEAD-like hel 63.5 4.4 9.5E-05 41.3 2.1 26 72-98 16-41 (201)
344 PRK13851 type IV secretion sys 63.4 2.9 6.4E-05 48.2 0.8 27 71-98 153-179 (344)
345 PF01580 FtsK_SpoIIIE: FtsK/Sp 63.3 2.9 6.2E-05 44.3 0.6 16 83-98 40-55 (205)
346 KOG0288 WD40 repeat protein Ti 63.2 3E+02 0.0066 32.3 16.8 68 599-666 3-73 (459)
347 KOG4807 F-actin binding protei 63.0 2.9E+02 0.0063 32.0 33.3 20 748-767 471-490 (593)
348 PF10473 CENP-F_leu_zip: Leuci 63.0 1.7E+02 0.0037 29.3 19.7 29 599-627 77-105 (140)
349 PF12795 MscS_porin: Mechanose 63.0 88 0.0019 34.2 12.2 134 797-943 2-147 (240)
350 KOG0989 Replication factor C, 62.9 3 6.5E-05 46.6 0.7 35 64-98 39-74 (346)
351 PF07724 AAA_2: AAA domain (Cd 62.6 3 6.5E-05 43.2 0.6 17 82-98 4-20 (171)
352 PF13671 AAA_33: AAA domain; P 62.6 3.1 6.8E-05 40.9 0.7 15 84-98 2-16 (143)
353 PTZ00454 26S protease regulato 62.5 2.8 6.1E-05 49.4 0.4 90 7-97 86-195 (398)
354 KOG4438 Centromere-associated 62.4 3.2E+02 0.0069 32.2 26.0 74 606-679 266-346 (446)
355 TIGR01069 mutS2 MutS2 family p 62.3 66 0.0014 41.4 12.6 6 315-320 354-359 (771)
356 PRK13764 ATPase; Provisional 62.3 3.7 8.1E-05 50.6 1.4 24 75-98 251-274 (602)
357 PLN00020 ribulose bisphosphate 62.2 3.1 6.8E-05 48.0 0.7 51 47-98 111-165 (413)
358 KOG1265 Phospholipase C [Lipid 62.1 4.5E+02 0.0098 33.9 25.4 66 634-699 1075-1147(1189)
359 TIGR03499 FlhF flagellar biosy 61.8 3.2 6.8E-05 46.6 0.6 16 83-98 196-211 (282)
360 PF04899 MbeD_MobD: MbeD/MobD 61.5 79 0.0017 27.8 9.0 47 861-907 22-68 (70)
361 PF06705 SF-assemblin: SF-asse 61.5 2.5E+02 0.0055 30.8 30.1 14 534-547 33-46 (247)
362 PRK12723 flagellar biosynthesi 61.4 3.5 7.5E-05 48.4 0.9 18 81-98 174-191 (388)
363 PF15290 Syntaphilin: Golgi-lo 61.2 72 0.0016 35.3 10.5 71 625-704 66-141 (305)
364 PF09789 DUF2353: Uncharacteri 61.1 3E+02 0.0065 31.5 29.2 163 598-766 129-315 (319)
365 PF07728 AAA_5: AAA domain (dy 60.5 3.4 7.4E-05 40.6 0.6 15 84-98 2-16 (139)
366 PF13238 AAA_18: AAA domain; P 60.5 3.5 7.6E-05 39.4 0.7 15 84-98 1-15 (129)
367 cd00268 DEADc DEAD-box helicas 60.3 5.1 0.00011 42.0 1.9 26 71-98 28-53 (203)
368 PRK03992 proteasome-activating 60.1 1.8 3.8E-05 51.0 -1.8 49 48-97 128-181 (389)
369 PF07106 TBPIP: Tat binding pr 60.0 56 0.0012 33.6 9.5 62 491-562 75-136 (169)
370 COG1223 Predicted ATPase (AAA+ 59.5 3.8 8.3E-05 44.7 0.7 18 81-98 151-168 (368)
371 PLN03025 replication factor C 59.4 3.2 6.9E-05 47.4 0.2 20 79-98 32-51 (319)
372 PF02456 Adeno_IVa2: Adenoviru 59.3 3.7 8E-05 45.9 0.6 70 84-153 90-187 (369)
373 KOG2391 Vacuolar sorting prote 59.2 55 0.0012 37.1 9.5 30 598-627 214-243 (365)
374 TIGR03345 VI_ClpV1 type VI sec 59.1 13 0.00029 48.1 5.7 99 82-209 597-696 (852)
375 COG1219 ClpX ATP-dependent pro 59.0 4.2 9.1E-05 45.7 1.0 16 82-97 98-113 (408)
376 PHA00729 NTP-binding motif con 58.9 5 0.00011 43.4 1.5 29 70-98 6-34 (226)
377 PRK14722 flhF flagellar biosyn 58.7 4 8.8E-05 47.5 0.8 18 81-98 137-154 (374)
378 PF04012 PspA_IM30: PspA/IM30 58.6 2.6E+02 0.0056 29.9 21.7 184 382-627 26-221 (221)
379 PF03215 Rad17: Rad17 cell cyc 58.4 5.1 0.00011 48.8 1.6 30 69-98 31-62 (519)
380 PRK10361 DNA recombination pro 58.4 4.1E+02 0.0089 32.2 26.4 52 596-647 100-160 (475)
381 TIGR00634 recN DNA repair prot 58.0 4.5E+02 0.0098 32.6 22.3 14 85-98 26-39 (563)
382 KOG3990 Uncharacterized conser 57.8 53 0.0012 35.5 8.7 47 642-692 247-293 (305)
383 PTZ00424 helicase 45; Provisio 57.8 5.3 0.00011 46.9 1.6 26 71-98 57-82 (401)
384 KOG1103 Predicted coiled-coil 57.8 3.3E+02 0.0072 31.0 22.8 27 565-591 137-163 (561)
385 KOG2629 Peroxisomal membrane a 57.7 64 0.0014 35.9 9.6 67 861-930 130-196 (300)
386 TIGR01000 bacteriocin_acc bact 57.6 4.1E+02 0.0089 31.9 21.3 20 678-697 296-315 (457)
387 PRK09183 transposase/IS protei 57.5 4.1 9E-05 45.1 0.6 16 83-98 104-119 (259)
388 KOG0163 Myosin class VI heavy 57.3 5E+02 0.011 32.9 19.8 20 79-98 142-161 (1259)
389 TIGR02338 gimC_beta prefoldin, 57.1 1.6E+02 0.0036 28.0 11.4 24 799-822 13-36 (110)
390 KOG4360 Uncharacterized coiled 57.1 4.2E+02 0.0092 32.0 17.7 90 643-765 214-303 (596)
391 PRK15424 propionate catabolism 57.0 12 0.00026 45.8 4.6 33 180-212 321-353 (538)
392 cd01126 TraG_VirD4 The TraG/Tr 56.8 4.4 9.5E-05 47.5 0.7 15 84-98 2-16 (384)
393 PF05266 DUF724: Protein of un 56.8 2.6E+02 0.0057 29.5 13.9 56 603-669 125-180 (190)
394 PF09738 DUF2051: Double stran 56.5 1.7E+02 0.0037 33.2 13.1 52 578-632 84-135 (302)
395 PRK10536 hypothetical protein; 56.5 6.2 0.00013 43.6 1.7 18 81-98 74-91 (262)
396 PRK12704 phosphodiesterase; Pr 56.4 4.6E+02 0.01 32.2 23.5 33 990-1030 402-434 (520)
397 TIGR02881 spore_V_K stage V sp 56.1 5.1 0.00011 44.3 1.1 18 81-98 42-59 (261)
398 TIGR03007 pepcterm_ChnLen poly 55.9 4.5E+02 0.0097 31.9 25.5 42 613-658 251-292 (498)
399 KOG0735 AAA+-type ATPase [Post 55.8 6.2 0.00014 48.6 1.7 48 79-126 699-760 (952)
400 PF15397 DUF4618: Domain of un 55.6 3.3E+02 0.0071 30.2 28.8 71 490-561 69-143 (258)
401 PF06309 Torsin: Torsin; Inte 55.2 5.1 0.00011 39.3 0.7 55 83-150 54-114 (127)
402 KOG0727 26S proteasome regulat 55.2 4.5 9.7E-05 43.8 0.4 119 9-128 98-250 (408)
403 PF06008 Laminin_I: Laminin Do 55.1 3.3E+02 0.0071 30.1 26.6 155 535-697 87-244 (264)
404 PF13555 AAA_29: P-loop contai 55.0 5 0.00011 34.3 0.6 15 84-98 26-40 (62)
405 PF15372 DUF4600: Domain of un 54.9 1.3E+02 0.0029 29.6 10.3 79 742-822 6-84 (129)
406 PRK11776 ATP-dependent RNA hel 54.9 6.7 0.00014 47.1 1.9 25 72-98 34-58 (460)
407 PF11559 ADIP: Afadin- and alp 54.7 2.4E+02 0.0051 28.3 18.0 86 597-686 54-143 (151)
408 COG1419 FlhF Flagellar GTP-bin 54.7 5.6 0.00012 46.4 1.1 18 81-98 203-220 (407)
409 PF14817 HAUS5: HAUS augmin-li 54.5 5.4E+02 0.012 32.4 35.0 89 850-938 379-472 (632)
410 KOG2751 Beclin-like protein [S 54.5 4.3E+02 0.0093 31.3 17.2 29 600-628 195-223 (447)
411 TIGR02231 conserved hypothetic 54.1 1.1E+02 0.0023 37.7 12.1 33 861-893 139-171 (525)
412 PF06156 DUF972: Protein of un 54.0 69 0.0015 30.6 8.1 52 851-902 6-57 (107)
413 smart00763 AAA_PrkA PrkA AAA d 53.5 10 0.00023 43.8 3.0 19 80-98 77-95 (361)
414 PRK11281 hypothetical protein; 53.2 7.3E+02 0.016 33.5 40.5 26 533-558 126-151 (1113)
415 PF06414 Zeta_toxin: Zeta toxi 53.1 5.6 0.00012 42.0 0.8 18 81-98 15-32 (199)
416 COG1136 SalX ABC-type antimicr 53.0 5.4 0.00012 43.1 0.6 16 83-98 33-48 (226)
417 PRK11192 ATP-dependent RNA hel 52.8 7.4 0.00016 46.3 1.8 26 71-98 30-55 (434)
418 COG2256 MGS1 ATPase related to 52.6 7 0.00015 45.3 1.4 43 49-97 22-64 (436)
419 PF02534 T4SS-DNA_transf: Type 52.1 8.8 0.00019 46.2 2.3 17 82-98 45-61 (469)
420 PRK00409 recombination and DNA 52.0 3.5E+02 0.0076 35.1 16.5 14 344-357 334-347 (782)
421 CHL00081 chlI Mg-protoporyphyr 51.8 4 8.6E-05 47.2 -0.7 44 46-98 12-55 (350)
422 PF12775 AAA_7: P-loop contain 51.7 7.1 0.00015 43.6 1.3 27 71-98 24-50 (272)
423 PRK14961 DNA polymerase III su 51.6 5.3 0.00011 46.5 0.3 30 69-98 25-55 (363)
424 PF05970 PIF1: PIF1-like helic 51.5 5.7 0.00012 46.3 0.5 34 61-98 6-39 (364)
425 PF06156 DUF972: Protein of un 51.5 82 0.0018 30.1 8.2 51 385-440 7-57 (107)
426 KOG2543 Origin recognition com 51.4 6.1 0.00013 45.5 0.7 39 82-143 31-69 (438)
427 KOG3859 Septins (P-loop GTPase 51.3 12 0.00026 41.2 2.8 46 65-110 25-79 (406)
428 PF12777 MT: Microtubule-bindi 51.3 37 0.00081 39.2 7.2 84 847-930 229-312 (344)
429 TIGR02902 spore_lonB ATP-depen 51.2 6.4 0.00014 48.3 0.9 44 46-98 60-103 (531)
430 KOG4657 Uncharacterized conser 51.1 2.6E+02 0.0057 30.1 12.4 105 491-600 47-151 (246)
431 PRK13341 recombination factor 51.0 7 0.00015 49.6 1.2 22 77-98 48-69 (725)
432 COG1125 OpuBA ABC-type proline 50.8 6.4 0.00014 43.1 0.7 18 81-98 26-44 (309)
433 PRK04837 ATP-dependent RNA hel 50.7 8.2 0.00018 45.8 1.7 25 72-98 38-62 (423)
434 PF10186 Atg14: UV radiation r 50.6 3.9E+02 0.0085 29.6 19.4 10 742-751 200-209 (302)
435 TIGR01618 phage_P_loop phage n 50.6 6.5 0.00014 42.5 0.7 19 81-99 12-30 (220)
436 KOG4005 Transcription factor X 50.5 1E+02 0.0022 33.2 9.3 38 862-899 85-122 (292)
437 PF13173 AAA_14: AAA domain 50.4 6.9 0.00015 38.1 0.8 17 82-98 3-19 (128)
438 cd00632 Prefoldin_beta Prefold 50.4 2.2E+02 0.0048 26.8 12.5 25 798-822 8-32 (105)
439 cd01127 TrwB Bacterial conjuga 50.3 6.8 0.00015 46.4 0.9 18 81-98 42-59 (410)
440 PF03962 Mnd1: Mnd1 family; I 50.2 3E+02 0.0064 29.0 13.0 49 605-665 79-127 (188)
441 PRK11331 5-methylcytosine-spec 50.1 7.3 0.00016 46.3 1.1 37 331-371 320-358 (459)
442 COG1126 GlnQ ABC-type polar am 49.6 6.7 0.00015 42.0 0.6 15 84-98 31-45 (240)
443 PF06048 DUF927: Domain of unk 49.6 8 0.00017 43.5 1.3 24 75-98 187-210 (286)
444 TIGR01242 26Sp45 26S proteasom 49.4 7.2 0.00016 45.4 0.9 18 81-98 156-173 (364)
445 KOG3759 Uncharacterized RUN do 49.4 5.2E+02 0.011 30.7 16.6 44 548-591 102-162 (621)
446 PRK11448 hsdR type I restricti 49.3 8 0.00017 51.5 1.4 40 67-116 420-459 (1123)
447 KOG2077 JNK/SAPK-associated pr 49.2 2.3E+02 0.0049 34.4 12.7 56 569-627 320-375 (832)
448 COG1222 RPT1 ATP-dependent 26S 49.0 6.7 0.00015 44.8 0.6 120 8-128 93-246 (406)
449 TIGR03319 YmdA_YtgF conserved 49.0 5.9E+02 0.013 31.3 22.4 14 1004-1017 386-399 (514)
450 PF00735 Septin: Septin; Inte 49.0 4.9 0.00011 45.1 -0.5 21 78-98 1-21 (281)
451 KOG0736 Peroxisome assembly fa 48.9 18 0.00039 45.3 4.1 23 105-127 784-806 (953)
452 KOG1103 Predicted coiled-coil 48.6 4.6E+02 0.01 29.9 18.9 16 597-612 141-156 (561)
453 PRK10590 ATP-dependent RNA hel 48.5 9.9 0.00022 45.7 2.0 25 72-98 31-55 (456)
454 PRK13169 DNA replication intia 48.5 86 0.0019 30.1 7.8 50 851-900 6-55 (110)
455 PRK00440 rfc replication facto 48.4 8.7 0.00019 43.3 1.4 21 78-98 35-55 (319)
456 TIGR02788 VirB11 P-type DNA tr 48.3 9.2 0.0002 43.5 1.5 28 70-98 134-161 (308)
457 KOG2391 Vacuolar sorting prote 48.2 2.1E+02 0.0045 32.7 11.8 98 795-899 245-342 (365)
458 PF08826 DMPK_coil: DMPK coile 48.2 1.3E+02 0.0028 25.8 7.9 43 878-920 15-57 (61)
459 PRK09841 cryptic autophosphory 48.1 2.5E+02 0.0054 36.0 14.5 43 869-911 348-393 (726)
460 PF13476 AAA_23: AAA domain; P 48.0 7.2 0.00016 40.4 0.6 17 82-98 20-36 (202)
461 PRK04195 replication factor C 47.9 9.6 0.00021 46.2 1.7 30 69-98 26-56 (482)
462 cd01120 RecA-like_NTPases RecA 47.8 7.3 0.00016 38.6 0.6 15 84-98 2-16 (165)
463 TIGR02237 recomb_radB DNA repa 47.8 8.6 0.00019 40.7 1.1 25 74-98 2-29 (209)
464 PRK04328 hypothetical protein; 47.7 11 0.00024 41.4 2.0 28 70-97 9-39 (249)
465 PF09789 DUF2353: Uncharacteri 47.6 4.8E+02 0.011 29.9 24.8 17 729-745 84-101 (319)
466 PF05729 NACHT: NACHT domain 47.4 8 0.00017 38.6 0.8 16 83-98 2-17 (166)
467 PF15397 DUF4618: Domain of un 47.4 4.4E+02 0.0095 29.3 29.4 56 533-592 79-134 (258)
468 PF15030 DUF4527: Protein of u 47.3 1.6E+02 0.0035 31.9 10.2 75 840-914 10-84 (277)
469 PF05384 DegS: Sensor protein 47.2 3.4E+02 0.0073 27.9 17.1 64 865-928 89-152 (159)
470 PF07693 KAP_NTPase: KAP famil 47.2 15 0.00033 41.5 3.2 20 79-98 18-37 (325)
471 TIGR00348 hsdR type I site-spe 47.0 10 0.00022 47.9 1.8 30 69-99 247-281 (667)
472 KOG0288 WD40 repeat protein Ti 46.8 4.3E+02 0.0093 31.1 14.1 20 976-995 399-419 (459)
473 KOG0979 Structural maintenance 46.6 8.2E+02 0.018 32.2 32.5 14 85-98 46-59 (1072)
474 PF08172 CASP_C: CASP C termin 46.4 2.7E+02 0.0058 30.8 12.3 46 571-633 86-131 (248)
475 PRK11519 tyrosine kinase; Prov 46.2 3E+02 0.0064 35.3 14.7 22 809-830 273-294 (719)
476 cd01123 Rad51_DMC1_radA Rad51_ 46.1 10 0.00023 40.8 1.5 29 70-98 5-36 (235)
477 cd02021 GntK Gluconate kinase 46.0 8.4 0.00018 38.4 0.7 15 84-98 2-16 (150)
478 cd03274 ABC_SMC4_euk Eukaryoti 45.9 9 0.0002 41.0 1.0 16 83-98 27-42 (212)
479 TIGR00293 prefoldin, archaeal 45.8 1.2E+02 0.0026 29.5 8.8 28 795-822 5-32 (126)
480 KOG0739 AAA+-type ATPase [Post 45.7 11 0.00023 42.1 1.4 80 48-128 130-227 (439)
481 TIGR03819 heli_sec_ATPase heli 45.6 10 0.00022 43.7 1.4 29 69-98 167-195 (340)
482 PRK05703 flhF flagellar biosyn 45.3 8.4 0.00018 45.8 0.7 17 82-98 222-238 (424)
483 TIGR00614 recQ_fam ATP-depende 45.1 12 0.00027 45.0 2.1 26 71-98 18-43 (470)
484 PRK06995 flhF flagellar biosyn 45.0 8.6 0.00019 46.3 0.7 17 82-98 257-273 (484)
485 COG5019 CDC3 Septin family pro 44.9 10 0.00022 43.5 1.2 21 78-98 20-40 (373)
486 PRK13822 conjugal transfer cou 44.8 17 0.00037 45.5 3.3 18 81-98 224-241 (641)
487 PRK03947 prefoldin subunit alp 44.7 2.8E+02 0.0062 27.4 11.4 46 840-888 91-136 (140)
488 PRK13342 recombination factor 44.5 12 0.00027 44.3 1.9 27 72-98 27-53 (413)
489 PRK15455 PrkA family serine pr 44.4 22 0.00047 43.7 3.8 42 50-96 75-118 (644)
490 PLN03188 kinesin-12 family pro 44.4 9.8E+02 0.021 32.5 32.6 52 577-628 1154-1206(1320)
491 PF07106 TBPIP: Tat binding pr 44.3 3.6E+02 0.0078 27.6 12.5 24 538-561 82-105 (169)
492 TIGR02680 conserved hypothetic 44.2 1.1E+03 0.023 32.9 43.4 16 83-98 26-41 (1353)
493 PRK00131 aroK shikimate kinase 44.1 10 0.00022 38.5 1.0 17 82-98 5-21 (175)
494 PRK06067 flagellar accessory p 44.1 14 0.0003 40.0 2.0 30 69-98 10-42 (234)
495 PF12072 DUF3552: Domain of un 43.8 4.2E+02 0.0092 28.1 19.3 48 649-696 93-140 (201)
496 PRK09841 cryptic autophosphory 43.7 4.4E+02 0.0095 33.8 15.7 23 726-748 269-292 (726)
497 TIGR01359 UMP_CMP_kin_fam UMP- 43.6 9.9 0.00022 39.2 0.8 13 84-96 2-14 (183)
498 PF12761 End3: Actin cytoskele 43.6 1.6E+02 0.0035 31.2 9.5 98 536-668 97-194 (195)
499 cd01850 CDC_Septin CDC/Septin. 43.6 9.4 0.0002 42.7 0.7 21 78-98 1-21 (276)
500 PHA02244 ATPase-like protein 43.6 12 0.00026 43.4 1.6 41 54-96 94-134 (383)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-119 Score=1059.08 Aligned_cols=823 Identities=42% Similarity=0.571 Sum_probs=719.4
Q ss_pred eCCCCcchhccCCceEEEEeCCCceeeecc-eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCc
Q 001657 16 VRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK 94 (1036)
Q Consensus 16 vRP~~~~e~~~~~~~~v~v~~~~~~v~~~~-~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGK 94 (1036)
|||+...|...||..|+.+.++.|+|.+++ .+|+||+||++. +.|..+|+.||.|+++.+|+|||+||+|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~-~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDL-ESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCc-hHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 799999999999999999999999999875 799999999876 459999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcc-ccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCcccccccccCCCCCccccCCCC
Q 001657 95 TYTMGTGLREGFQT-GLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRP 173 (1036)
Q Consensus 95 TyTm~G~~~~~~~~-Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1036)
||||++++...... |+|||++.++|..|..... ..|.|.|||+|||++.|+|||.|... ..
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~-----------------~~ 141 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRL-----------------KA 141 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhh-----------------hh
Confidence 99999987655444 9999999999999998654 78999999999999999999985431 23
Q ss_pred CceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeeecccCCCCCCCCCCC
Q 001657 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDED 253 (1036)
Q Consensus 174 ~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~~~~~~~~~~ 253 (1036)
++.+++ +.|++++.|+++++|.+..+++.+|..|...|++++|+||.+|||||+||||+++++.+...
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~----------- 209 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK----------- 209 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence 478888 88999999999999999999999999999999999999999999999999999998655322
Q ss_pred CCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCChhhhhhhccCCC
Q 001657 254 MDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGG 333 (1036)
Q Consensus 254 ~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrlLqdsLgG 333 (1036)
...++++|||||||||||.++|+++|.|++||++||.||++|||||++|++.++ ++|||||||+|||||||+|||
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG 284 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG 284 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence 226789999999999999999999999999999999999999999999999875 679999999999999999999
Q ss_pred CceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHH
Q 001657 334 NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGR 413 (1036)
Q Consensus 334 ns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~d~~~~ei~~Lr~ei~~Lq~eL~~~~~~~~~~e~~~L~ek 413 (1036)
|+.|+||+||||++.|+.||++||+||+||++|+|||+||.|+...+|..|+.+|+.|+.+|+...+....+++..+..+
T Consensus 285 ns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e 364 (913)
T KOG0244|consen 285 NSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFE 364 (913)
T ss_pred CcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999887665567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCC------------------c--ccccchhhhhccccccccchhhh
Q 001657 414 IAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGP------------------V--SFVKSDGLKRGFQSIDSSDYQMD 473 (1036)
Q Consensus 414 i~~L~~e~~~L~~eL~~~~~~la~~Ee~~~~~~~~~------------------~--~~~~~~~L~~~~~~l~~~~~~l~ 473 (1036)
+..++..+..+..++++.+..+..-..+...+.... . ...+...|.+.++++....+++.
T Consensus 365 ~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~ 444 (913)
T KOG0244|consen 365 NVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIG 444 (913)
T ss_pred hhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccccccc
Confidence 999999999999999888877743322221111000 0 00011124444444433212221
Q ss_pred hhhhc-CCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 474 EAVSD-GNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQE 550 (1036)
Q Consensus 474 e~l~~-~~~~~~eee~~~~e~~~~q~kl~~El~eL~k~Le~kE~~~~~~~~--~~~~~~k~~~e~ki~~Le~ei~~lqkE 550 (1036)
..... +++.........+++...+.+|..++.+++++|++||..++++.. ......+++|+.++..|+.++..++.|
T Consensus 445 ~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E 524 (913)
T KOG0244|consen 445 MNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE 524 (913)
T ss_pred ccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc
Confidence 11111 111111122456788889999999999999999999999988874 345678999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 551 RDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (1036)
Q Consensus 551 rd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~r 630 (1036)
++.|..++... +....++.++|+++++.||.++..|+++...+..|.+.+.+.+.....|..+|..+|.++|+|++
T Consensus 525 ~~~l~~el~~~----~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~ 600 (913)
T KOG0244|consen 525 RSRLRNELNVF----NRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR 600 (913)
T ss_pred cHHHHHHHHhh----hHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 33788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 001657 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNS 710 (1036)
Q Consensus 631 kmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~ 710 (1036)
+|++|+++|+.|++..+|+..||+.+.|+.++++..++..+.+|..||+|+++|+.++++||++++..++......-
T Consensus 601 ~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~~--- 677 (913)
T KOG0244|consen 601 VMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQV--- 677 (913)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876522110
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCCccccccCC
Q 001657 711 TGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLS 790 (1036)
Q Consensus 711 ~~~~~~~~~~~~~~~~~Wl~~ELE~l~~l~E~~~~~~~q~e~r~k~~~El~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~ 790 (1036)
..............|+.+|+|++..+.++++++.++++.|+.+.-++..|+...
T Consensus 678 ---~~~~~~~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~----------------------- 731 (913)
T KOG0244|consen 678 ---TLGDNGASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG----------------------- 731 (913)
T ss_pred ---chhhcCchhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 000111345678999999999999999999999999999999999999998721
Q ss_pred hhHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHh-------
Q 001657 791 PNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLW------- 863 (1036)
Q Consensus 791 ~~~r~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~------- 863 (1036)
...|.+|+.++...+++|++|++++..++++.+.+. +|+++.++.+||+.+.++++..+..+++..
T Consensus 732 ----~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~---~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~r 804 (913)
T KOG0244|consen 732 ----KKLLGSLEPVMELTSDQISSMQDLIITASKDERIKM---RWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGSR 804 (913)
T ss_pred ----HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHHH---HHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 567899999999999999999999999987777666 999999999999999999999999998887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001657 864 EKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQ 914 (1036)
Q Consensus 864 E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~ 914 (1036)
+...++.++..++.+....+++.+++..++..+.....+.+..++....+.
T Consensus 805 e~~~~~~~l~~kl~~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~~~~~ 855 (913)
T KOG0244|consen 805 EKGIKKWDLTQKLLDEQVNLRKDEVQALGVVPEHPVLLSGCKGGILKVWQM 855 (913)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 788889999999999988999999999999999999999998888887664
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-88 Score=812.28 Aligned_cols=397 Identities=40% Similarity=0.630 Sum_probs=333.0
Q ss_pred CCCceEEEEEeCCCCcchhccCCceEEEEeCCCceeeec--------ceeEEcceeeCCCCCCccccccccchhhHHHhh
Q 001657 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (1036)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~--------~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l 77 (1036)
...+|+|+|||||++..|....+..+|++.+....|.+. .+.|+||+||||.+ +|.+||+.+|.|+|..|+
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes-~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPES-QQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcch-hHHHHHHHHHHHHHHHHh
Confidence 457999999999999999988888888877654434331 46899999999975 599999999999999999
Q ss_pred cCCCccEeeeccCCCCcccccccCCC-----CCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCc
Q 001657 78 QGYNATVLAYGQTGSGKTYTMGTGLR-----EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (1036)
Q Consensus 78 ~G~N~ti~aYGqTgSGKTyTm~G~~~-----~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~ 152 (1036)
.|||||||||||||+||||||.|+.. .+..+|||||++.+||+.++.. ..+|+|.|||+|+|||+|+|||+|.
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCc
Confidence 99999999999999999999999654 4578999999999999999984 4799999999999999999999987
Q ss_pred ccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEE
Q 001657 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (1036)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti 232 (1036)
.... ....+.+.+++. +..||++|.|+.+++|+++.|++.+|.+|...|++++|.||.+|||||+||+|
T Consensus 204 ~~~~--------~~~~~k~~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsI 272 (1041)
T KOG0243|consen 204 DTSD--------KKLRIKDDSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSI 272 (1041)
T ss_pred cccc--------cccccccCCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEE
Confidence 6421 122223333333 67899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCC
Q 001657 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (1036)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~ 312 (1036)
+|+-... + ..+.+-..+|||+||||||||-..++|+.+.|.+|++.||+||++||+||+||.+..
T Consensus 273 tvhike~---------t--~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s---- 337 (1041)
T KOG0243|consen 273 TVHIKEN---------T--PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS---- 337 (1041)
T ss_pred EEEEecC---------C--CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC----
Confidence 9986421 1 112355789999999999999999999999999999999999999999999999865
Q ss_pred CCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccc-hHHHHHHHHHHHHH
Q 001657 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI-SSDMQKLRQQLKYL 391 (1036)
Q Consensus 313 ~~~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~d~~-~~ei~~Lr~ei~~L 391 (1036)
+|||||+|||||||||||||.++|+|||||||+..+++||++||.||.||++|+|||.+|+-.. ...+..|..+|.+|
T Consensus 338 -~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerL 416 (1041)
T KOG0243|consen 338 -GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERL 416 (1041)
T ss_pred -CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999997543 44577899999999
Q ss_pred HHHHhhhh--CCC--ChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 392 QAELCARA--GGA--PSD-------EVQVLKGRIAWLEATNEDLCQELHEYR 432 (1036)
Q Consensus 392 q~eL~~~~--~~~--~~~-------e~~~L~eki~~L~~e~~~L~~eL~~~~ 432 (1036)
+..|.+.+ .|+ +.+ +++.+.+++..++.+...+..+|....
T Consensus 417 K~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~ 468 (1041)
T KOG0243|consen 417 KRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLT 468 (1041)
T ss_pred HHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997543 232 222 334444444444444444444444333
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7e-91 Score=803.40 Aligned_cols=357 Identities=46% Similarity=0.687 Sum_probs=329.9
Q ss_pred CCCceEEEEEeCCCCcchhccCCceEEEEeCCCceeeec---------ceeEEcceeeCCCCCCccccccccchhhHHHh
Q 001657 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (1036)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~---------~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~ 76 (1036)
..++|+|+||+||++..+...++..++.+.+...++.+. +++|+||+||+++++ |++||..++.|+|++|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~st-Q~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDST-QDDVYQETVAPLVESV 81 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCC-HHHHHHHHhHHHHHHH
Confidence 467999999999999999999999888888776666552 468999999998765 9999999999999999
Q ss_pred hcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCccccc
Q 001657 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (1036)
Q Consensus 77 l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~ 156 (1036)
++|||+||||||||||||||||.|+ +....|||||+|.+||..|........|.|+|||+|||||.|+|||++.+
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~--- 156 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN--- 156 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---
Confidence 9999999999999999999999998 47789999999999999999977667899999999999999999998754
Q ss_pred ccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEe
Q 001657 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (1036)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q 236 (1036)
.+.+.|+++|..||||.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||||+|++
T Consensus 157 ---------------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~ 221 (574)
T KOG4280|consen 157 ---------------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIES 221 (574)
T ss_pred ---------------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEe
Confidence 14789999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcc
Q 001657 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (1036)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~i 316 (1036)
.... .+.......|+|||||||||||..+|++.|.|++|+.+||+||++||+||++|+++.+ +||
T Consensus 222 ~~~~-----------~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~----~HI 286 (574)
T KOG4280|consen 222 SEKS-----------DGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK----THI 286 (574)
T ss_pred eccc-----------CCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc----CCC
Confidence 3221 1122456789999999999999999999999999999999999999999999999875 399
Q ss_pred cCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHh
Q 001657 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELC 396 (1036)
Q Consensus 317 PyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~d~~~~ei~~Lr~ei~~Lq~eL~ 396 (1036)
||||||||+||||||||||+|+|||||||++.+++||++||+||+||+.|+|+|++|.|+....+..|+++|+.|+.+|.
T Consensus 287 PYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 287 PYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELD 366 (574)
T ss_pred CcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hh
Q 001657 397 AR 398 (1036)
Q Consensus 397 ~~ 398 (1036)
..
T Consensus 367 ~~ 368 (574)
T KOG4280|consen 367 PG 368 (574)
T ss_pred cc
Confidence 54
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.8e-90 Score=803.84 Aligned_cols=365 Identities=41% Similarity=0.628 Sum_probs=327.1
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCceeeec-----ceeEEcceeeCCCCC------CccccccccchhhHHH
Q 001657 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-----THSFTFDHVYGNGGS------PSSAMFGECVAPLVDG 75 (1036)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~-----~~~F~FD~Vf~~~~t------~q~~vy~~~v~plV~~ 75 (1036)
..+|+|+||||||+..|....|..+|.+..+..++... ...|+||++|++.++ .|..||+.+..|++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 56999999999999999988887666666665555432 257999999986543 5789999999999999
Q ss_pred hhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhc-ccceEEEEeehhhhhhhhhhhccCCccc
Q 001657 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (1036)
Q Consensus 76 ~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DLL~~~~~ 154 (1036)
+|+|||+||||||||||||||||.| +.+..++|||||++++||.+|.... .+..|.|.|||+|||||.|+|||+...
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG-~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~- 160 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMG-FQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK- 160 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeec-cCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC-
Confidence 9999999999999999999999998 4466789999999999999998753 457899999999999999999998311
Q ss_pred ccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEE
Q 001657 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (1036)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v 234 (1036)
.+++|.+||+|-.|+||.+|+.+.|+|+.|+..++..|++.|++++|+||..|||||+||||.+
T Consensus 161 ----------------~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvf 224 (1221)
T KOG0245|consen 161 ----------------SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVF 224 (1221)
T ss_pred ----------------CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEE
Confidence 2467999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhcc--CCC
Q 001657 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK--RRE 312 (1036)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~--~~~ 312 (1036)
.|..... ........+|+|+|||||||||+..||+.|+|+|||.+||+||++||.||+||++..+ .++
T Consensus 225 tQk~~~~----------~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~k 294 (1221)
T KOG0245|consen 225 TQKKHDQ----------DTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKK 294 (1221)
T ss_pred Eeeeccc----------cCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCC
Confidence 9965321 1112346789999999999999999999999999999999999999999999998653 334
Q ss_pred CCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHH
Q 001657 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQ 392 (1036)
Q Consensus 313 ~~~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~d~~~~ei~~Lr~ei~~Lq 392 (1036)
..+||||||-||+||+++|||||+|+|||++||++.||+|||+|||||+|||+|+|+|+||.|+....|..|++|+.+|+
T Consensus 295 s~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLk 374 (1221)
T KOG0245|consen 295 SDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLK 374 (1221)
T ss_pred CccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q 001657 393 AELCARA 399 (1036)
Q Consensus 393 ~eL~~~~ 399 (1036)
..|...+
T Consensus 375 sll~~~~ 381 (1221)
T KOG0245|consen 375 SLLRAQG 381 (1221)
T ss_pred HHHhccc
Confidence 9997654
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=6.7e-85 Score=731.18 Aligned_cols=339 Identities=42% Similarity=0.687 Sum_probs=311.7
Q ss_pred CCCCceEEEEEeCCCCcchhccCCceEEEEeCCCceeeecc----eeEEcceeeCCCCCCccccccccchhhHHHhhcCC
Q 001657 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT----HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (1036)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~~----~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~ 80 (1036)
++.|+|+|+||+||.+..|...|.....-+.++...|.+.+ .+|.||+||.|++| |++||..++.|+|++||.||
T Consensus 4 ~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnat-Qe~Vy~~~a~~Iv~dVL~GY 82 (607)
T KOG0240|consen 4 SAECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNAT-QEDVYEFAAKPIVDDVLLGY 82 (607)
T ss_pred CCCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCcc-HHHHHHHHHHHHHHHHhccc
Confidence 36799999999999999998877766555555566666665 89999999999876 99999999999999999999
Q ss_pred CccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCccccccccc
Q 001657 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~ 160 (1036)
|+||||||||||||||||.|...+....|||||++++||++|.+.....+|.|.|||||||+|+|+|||+|..
T Consensus 83 NGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k------- 155 (607)
T KOG0240|consen 83 NGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEK------- 155 (607)
T ss_pred ceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCccc-------
Confidence 9999999999999999999977666778999999999999999998889999999999999999999998643
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeeec
Q 001657 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (1036)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~ 240 (1036)
.++.|++|.+.+++|.|++++.|.++++++.++..|..+|+++.|+||.+|||||+||+|+|.|.+.
T Consensus 156 ------------~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~- 222 (607)
T KOG0240|consen 156 ------------TNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENV- 222 (607)
T ss_pred ------------CCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccc-
Confidence 5789999999999999999999999999999999999999999999999999999999999999532
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 001657 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (1036)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRd 320 (1036)
.+...++|+|.||||||||+++++|+.|.-+.|+.+||+||.|||+||++|+++.+ +||||||
T Consensus 223 -------------e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~----shipYRD 285 (607)
T KOG0240|consen 223 -------------EDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPK----SHIPYRD 285 (607)
T ss_pred -------------cchhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCC----CCCcchh
Confidence 13457899999999999999999999999999999999999999999999999853 6999999
Q ss_pred ChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHH
Q 001657 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM 381 (1036)
Q Consensus 321 SkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~d~~~~ei 381 (1036)
|||||||+|+|||||+|++|+|+||+..|..||.+||+|++||+.|+|.|.+|.....+++
T Consensus 286 SKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~ 346 (607)
T KOG0240|consen 286 SKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEW 346 (607)
T ss_pred hHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999986555443
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=9e-83 Score=767.75 Aligned_cols=354 Identities=41% Similarity=0.613 Sum_probs=304.9
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCceeeecceeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEee
Q 001657 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (1036)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~a 86 (1036)
+++|+|||||||+...|. +.. ++.. ..+..+.+.++.|+||+||+++++ |++||+.++.|+|+++|+|||+||||
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~-iV~~-~s~dsl~I~~qtFtFD~VFdp~aT-QedVFe~vv~PLV~svLdGyNaTIFA 171 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEM-IVQK-MSNDSLTINGQTFTFDSIADPEST-QEDIFQLVGAPLVENCLAGFNSSVFA 171 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCe-eEEE-cCCCeEEEeCcEEeCCeeeCCCCC-HHHHHHHHHHHHHHHHhcCCcceeec
Confidence 579999999999998863 333 3322 234456778899999999999866 89999999999999999999999999
Q ss_pred eccCCCCcccccccCCC-------CCCccccHHHHHHHHHHHHHhh-----cccceEEEEeehhhhhhhhhhhccCCccc
Q 001657 87 YGQTGSGKTYTMGTGLR-------EGFQTGLIPQVMNALFNKIETL-----RHQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (1036)
Q Consensus 87 YGqTgSGKTyTm~G~~~-------~~~~~Giipr~~~~LF~~i~~~-----~~~~~~~v~vS~~EIynE~v~DLL~~~~~ 154 (1036)
||||||||||||+|+.. .+..+|||||++++||..|... .....|.|+|||||||||.|||||++..
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~- 250 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ- 250 (1320)
T ss_pred CCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc-
Confidence 99999999999999653 2467899999999999999653 2346799999999999999999997632
Q ss_pred ccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEE
Q 001657 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (1036)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v 234 (1036)
..+.|++++.+|++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 251 ------------------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~V 312 (1320)
T PLN03188 251 ------------------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVV 312 (1320)
T ss_pred ------------------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEE
Confidence 35889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCC
Q 001657 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (1036)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~ 314 (1036)
++..... .+.......|+|+|||||||||.+.+++.|.+++|+++||+||++||+||.+|+.....++..
T Consensus 313 es~~k~~----------~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~ 382 (1320)
T PLN03188 313 ESRCKSV----------ADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQR 382 (1320)
T ss_pred EEeeccc----------CCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCC
Confidence 8743211 011233568999999999999999999999999999999999999999999999755444567
Q ss_pred cccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccc------hHHHHHHHHHH
Q 001657 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI------SSDMQKLRQQL 388 (1036)
Q Consensus 315 ~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~d~~------~~ei~~Lr~ei 388 (1036)
||||||||||+||+|+|||||+|+|||||||+..++.||++||+||+||+.|+|+|++|.... .+.|..|+.||
T Consensus 383 HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL 462 (1320)
T PLN03188 383 HIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDEL 462 (1320)
T ss_pred cCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997632 22444455555
Q ss_pred HHHHHH
Q 001657 389 KYLQAE 394 (1036)
Q Consensus 389 ~~Lq~e 394 (1036)
..|+..
T Consensus 463 ~rLK~~ 468 (1320)
T PLN03188 463 QRVKAN 468 (1320)
T ss_pred HHHHHh
Confidence 555544
No 7
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-79 Score=735.90 Aligned_cols=349 Identities=45% Similarity=0.683 Sum_probs=305.1
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCceeee----c------ceeEEcceeeCCCCCCccccccccchhhHHHh
Q 001657 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI----G------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (1036)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~----~------~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~ 76 (1036)
...|.|+|||||++..+...+. .|.....++..+.. . ...|.||+||+++++ |.+||+.++.|+|++|
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t-~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGD-RSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEEST-QEDVYERTTKPLLLSV 82 (675)
T ss_pred cceeEEEEEeCCCCccccccCC-ccceEecCCceeEeeccccccccccccceeeeeecCCCCC-HHHHHHhccHHHHHHH
Confidence 4689999999999998533222 22222222222111 1 378999999999877 8999999999999999
Q ss_pred hcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCccccc
Q 001657 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (1036)
Q Consensus 77 l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~ 156 (1036)
+.|||+||||||||||||||||.|. ..+|||||.++.+||+.|.... ...|.|.|||+|||||.|+|||+|..
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~---~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~--- 155 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGS---EDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG--- 155 (675)
T ss_pred hcCcccceeeecCCCCCCceEEecc---CCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC---
Confidence 9999999999999999999999884 4559999999999999999866 78999999999999999999998743
Q ss_pred ccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEe
Q 001657 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (1036)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q 236 (1036)
+++.|+||+.+|++|+||++..|.|+++++.+|..|..+|+++.|++|..|||||+||+|+|.+
T Consensus 156 ----------------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s 219 (675)
T KOG0242|consen 156 ----------------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVES 219 (675)
T ss_pred ----------------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEe
Confidence 4589999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcc
Q 001657 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (1036)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~i 316 (1036)
..+.. . . ..|+|+|||||||||+.+|++.|.|++||++||+||++||+||++|+++.. ..||
T Consensus 220 ~~~~~-----------~---~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~---~~hi 281 (675)
T KOG0242|consen 220 RGREA-----------S---S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKR---PRHI 281 (675)
T ss_pred ccccc-----------c---c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccc---cCCC
Confidence 54311 0 1 668999999999999999999999999999999999999999999998854 2399
Q ss_pred cCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHH-HHHHHHHHHHHHH
Q 001657 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQ-KLRQQLKYLQAEL 395 (1036)
Q Consensus 317 PyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~d~~~~ei~-~Lr~ei~~Lq~eL 395 (1036)
||||||||||||++|||||+|+|||||+|+..+++||.+||+||+||++|++++.+|.-....-+. .++.++..|+.++
T Consensus 282 pYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~ 361 (675)
T KOG0242|consen 282 PYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAEL 361 (675)
T ss_pred CccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999765555443 3457888888888
Q ss_pred hhh
Q 001657 396 CAR 398 (1036)
Q Consensus 396 ~~~ 398 (1036)
...
T Consensus 362 ~~~ 364 (675)
T KOG0242|consen 362 ERL 364 (675)
T ss_pred Hhh
Confidence 543
No 8
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-78 Score=694.04 Aligned_cols=362 Identities=42% Similarity=0.633 Sum_probs=322.7
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCceeee-----------cceeEEcceeeCCCC------CCccccccccc
Q 001657 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNGG------SPSSAMFGECV 69 (1036)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~-----------~~~~F~FD~Vf~~~~------t~q~~vy~~~v 69 (1036)
+..|+|+|||||++.+|........|.|..+...+.+ ++++|.||++|++.+ +.|+.||+.+.
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 5689999999999999987777666666655444332 357999999998643 25899999999
Q ss_pred hhhHHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhc-ccceEEEEeehhhhhhhhhhhc
Q 001657 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDL 148 (1036)
Q Consensus 70 ~plV~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DL 148 (1036)
..+|+++|+|||+||||||||||||||||.|. ..++|||||++..||..|.... +...|.|.|||+|||||++|||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt---~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGT---AEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeecc---CCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 99999999999999999999999999999884 5569999999999999997653 4568999999999999999999
Q ss_pred cCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcee
Q 001657 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHA 228 (1036)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~ 228 (1036)
|+|... +..+.+++++--|+||.||++..|+|++++-.+|..|+++|++++|+||..|||||+
T Consensus 160 LdPk~s-----------------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHa 222 (1714)
T KOG0241|consen 160 LDPKGS-----------------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHA 222 (1714)
T ss_pred hCCCCC-----------------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccce
Confidence 998652 357899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhc
Q 001657 229 IFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (1036)
Q Consensus 229 Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~ 308 (1036)
||.|.|.|.-. .+.++. .--..|+|.|||||||||+.+||+.|.|++||.+||+||++||.||++|++.+
T Consensus 223 VFslvvtQ~l~----D~ktg~------SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 223 VFSLVVTQTLY----DLKTGH------SGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred eEEEEEeeEEe----ccccCc------chhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 99999998532 122221 12357999999999999999999999999999999999999999999999865
Q ss_pred cC-CCCCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHH
Q 001657 309 KR-REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQ 387 (1036)
Q Consensus 309 ~~-~~~~~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~d~~~~ei~~Lr~e 387 (1036)
.. +++.+||||||-||+||+|+|||||+|+||+||||+.+||+|||+|||||.||++|+|..+||.|+...-+..+++|
T Consensus 293 n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReE 372 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREE 372 (1714)
T ss_pred cCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHH
Confidence 43 34679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 001657 388 LKYLQAELCAR 398 (1036)
Q Consensus 388 i~~Lq~eL~~~ 398 (1036)
+..|+..|...
T Consensus 373 ve~lr~qL~~a 383 (1714)
T KOG0241|consen 373 VEKLREQLEQA 383 (1714)
T ss_pred HHHHHHHHhhh
Confidence 99999999653
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.3e-78 Score=689.12 Aligned_cols=325 Identities=42% Similarity=0.604 Sum_probs=289.4
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCceeeec--ceeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEee
Q 001657 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (1036)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~--~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~a 86 (1036)
+|+|+|||||+...|...+...|+.+..+...+..+ .+.|.||+||+++++ |++||+.++.|+|+++|+|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~p~v~~~~~G~n~ti~a 80 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTN-QEDVFQSVGKPLVEDCLSGYNGSIFA 80 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCC-HHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 799999999999999877777788776555444333 379999999998766 89999999999999999999999999
Q ss_pred eccCCCCcccccccCCCC-----CCccccHHHHHHHHHHHHHhh----cccceEEEEeehhhhhhhhhhhccCCcccccc
Q 001657 87 YGQTGSGKTYTMGTGLRE-----GFQTGLIPQVMNALFNKIETL----RHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (1036)
Q Consensus 87 YGqTgSGKTyTm~G~~~~-----~~~~Giipr~~~~LF~~i~~~----~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~ 157 (1036)
||||||||||||+|+... ...+|||||++++||..+... .....|.|+|||+|||||.|||||++..
T Consensus 81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~---- 156 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS---- 156 (337)
T ss_pred eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC----
Confidence 999999999999997653 247899999999999998754 2346899999999999999999997632
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEee
Q 001657 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (1036)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (1036)
..+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 157 ---------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 221 (337)
T cd01373 157 ---------------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESW 221 (337)
T ss_pred ---------------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEe
Confidence 35889999999999999999999999999999999999999999999999999999999999875
Q ss_pred eecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCccc
Q 001657 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (1036)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iP 317 (1036)
.... .......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+..... ...|||
T Consensus 222 ~~~~------------~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~-~~~~ip 288 (337)
T cd01373 222 EKKA------------SSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG-KQRHVP 288 (337)
T ss_pred ecCC------------CCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC-CCCccC
Confidence 3211 112456799999999999999999999999999999999999999999999875432 257999
Q ss_pred CCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001657 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1036)
Q Consensus 318 yRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~I 366 (1036)
|||||||+||+|+|||||+|+|||||||+..+++||++||+||.||+.|
T Consensus 289 yR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 289 YRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=4.4e-78 Score=684.91 Aligned_cols=322 Identities=47% Similarity=0.695 Sum_probs=292.0
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCceee----------------ecceeEEcceeeCCCCCCccccccccchhh
Q 001657 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ----------------IGTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (1036)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~----------------~~~~~F~FD~Vf~~~~t~q~~vy~~~v~pl 72 (1036)
+|+|+|||||+...|...+...|+.+.++...+. ...+.|+||+||+++++ |++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~-q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETST-QEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCC-HHHHHHHHHHHH
Confidence 5999999999999998888888888765432111 12478999999998866 899999999999
Q ss_pred HHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCc
Q 001657 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (1036)
Q Consensus 73 V~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~ 152 (1036)
|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+........|.|+|||+|||||.|+|||++.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD---SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC---CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999964 56999999999999999987777899999999999999999999763
Q ss_pred ccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEE
Q 001657 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (1036)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti 232 (1036)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|
T Consensus 157 -------------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i 217 (338)
T cd01370 157 -------------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQI 217 (338)
T ss_pred -------------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEE
Confidence 2468999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCC
Q 001657 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (1036)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~ 312 (1036)
+|.+.... .+.......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+...+ .
T Consensus 218 ~i~~~~~~-----------~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~ 284 (338)
T cd01370 218 TVRQKDRT-----------ASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--K 284 (338)
T ss_pred EEEEEecC-----------CCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--C
Confidence 99986431 1112456789999999999999999999999999999999999999999999998763 3
Q ss_pred CCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001657 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1036)
Q Consensus 313 ~~~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~I 366 (1036)
..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 285 ~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 469999999999999999999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.4e-76 Score=670.79 Aligned_cols=326 Identities=36% Similarity=0.591 Sum_probs=287.0
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCceeee-----------------cceeEEcceeeCCCCCCccccccccchh
Q 001657 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (1036)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~-----------------~~~~F~FD~Vf~~~~t~q~~vy~~~v~p 71 (1036)
+|+|+|||||+.+.|...+...|+.+.++. .+.+ ..+.|.||+||+++++ |++||+.++.|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~t-q~~vy~~~~~p 79 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTT-QKEFFEGTALP 79 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCCC-HHHHHHHHHHH
Confidence 799999999999999877777777765433 2221 2468999999998866 89999999999
Q ss_pred hHHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCC
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~ 151 (1036)
+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.. |.|+|||+|||||.|||||++
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP---GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCC
Confidence 9999999999999999999999999999964 5799999999999999876 999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEE
Q 001657 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231 (1036)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ift 231 (1036)
.... ...+.++.|+++++++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+
T Consensus 151 ~~~~-------------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~ 217 (345)
T cd01368 151 SPSS-------------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFT 217 (345)
T ss_pred cccc-------------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEE
Confidence 5421 012457999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCC
Q 001657 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRR 311 (1036)
Q Consensus 232 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~ 311 (1036)
|+|.+...... +. ..........|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+......
T Consensus 218 i~v~~~~~~~~-----~~-~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~ 291 (345)
T cd01368 218 IKLVQAPGDSD-----GD-VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG 291 (345)
T ss_pred EEEEEeccCcc-----cc-cccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 99998543211 00 1112345678999999999999999999999999999999999999999999999865443
Q ss_pred -CCCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001657 312 -EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1036)
Q Consensus 312 -~~~~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar 364 (1036)
...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 292 ~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 292 STNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=5.6e-76 Score=673.17 Aligned_cols=336 Identities=45% Similarity=0.672 Sum_probs=299.0
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCceeee---------cceeEEcceeeCCC-------CCCccccccccchh
Q 001657 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNG-------GSPSSAMFGECVAP 71 (1036)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~---------~~~~F~FD~Vf~~~-------~t~q~~vy~~~v~p 71 (1036)
.+|+|+|||||+...|...+...++.+.+....+.. ....|+||+||++. ++ |++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~t-q~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYAS-QEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCC-HHHHHHHHHHH
Confidence 479999999999999988888878877664333322 23689999999876 55 89999999999
Q ss_pred hHHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcc-cceEEEEeehhhhhhhhhhhccC
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLD 150 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~ 150 (1036)
+|+++++|||+||||||||||||||||+|+.. .+|||||++++||+.+..... ...|.|+|||+|||||.|||||+
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 156 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLN 156 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCC
Confidence 99999999999999999999999999999644 699999999999999987544 57899999999999999999998
Q ss_pred CcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEE
Q 001657 151 SVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (1036)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~If 230 (1036)
+.. .....+.|++++.++++|.|++++.|+|++|++.+|..|..+|.+++|.+|..|||||+||
T Consensus 157 ~~~----------------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~ 220 (356)
T cd01365 157 PKK----------------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVF 220 (356)
T ss_pred CCc----------------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEE
Confidence 643 1235689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccC
Q 001657 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKR 310 (1036)
Q Consensus 231 ti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~ 310 (1036)
+|+|.+...... ........|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.....
T Consensus 221 ~l~v~~~~~~~~----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~ 290 (356)
T cd01365 221 TIVLTQKKLDKE----------TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSA 290 (356)
T ss_pred EEEEEEEecccC----------CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 999998543210 1124567899999999999999999999999999999999999999999999986532
Q ss_pred ---CCCCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 001657 311 ---REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (1036)
Q Consensus 311 ---~~~~~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn 373 (1036)
+...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||++|++|+|+|++|
T Consensus 291 ~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 291 KSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 245799999999999999999999999999999999999999999999999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.3e-75 Score=670.01 Aligned_cols=333 Identities=44% Similarity=0.694 Sum_probs=301.4
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCceeee--------cceeEEcceeeCCCCCCccccccccchhhHHHhhcC
Q 001657 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (1036)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~--------~~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G 79 (1036)
++|+|+|||||+...|...++..++.+.....+|.+ ..+.|+||+||+++++ |++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~-q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEAD-QIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCC-HHHHHHHHHHHHHHHHhCC
Confidence 589999999999999988888888888777666655 3478999999998766 8999999999999999999
Q ss_pred CCccEeeeccCCCCcccccccCCCC--------CCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCC
Q 001657 80 YNATVLAYGQTGSGKTYTMGTGLRE--------GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (1036)
Q Consensus 80 ~N~ti~aYGqTgSGKTyTm~G~~~~--------~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~ 151 (1036)
||+||||||+|||||||||+|+... ...+|||||++.+||..+... ...|.|+|||+|||||.|||||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999998654 456899999999999999874 668999999999999999999986
Q ss_pred cccccccccCCCCCccccCCCCCceEEec--CCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeE
Q 001657 152 VSVSKSVTANGHAGKVSISGRPPIQIRES--SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (1036)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~--~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~I 229 (1036)
.. ....++.++++ +.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+|
T Consensus 159 ~~----------------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i 222 (352)
T cd01364 159 ES----------------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSI 222 (352)
T ss_pred cc----------------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceE
Confidence 43 12457899999 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhcc
Q 001657 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK 309 (1036)
Q Consensus 230 fti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~ 309 (1036)
|+|+|.+..... ........|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+...
T Consensus 223 ~~i~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~- 290 (352)
T cd01364 223 FSITIHIKETTI-----------SGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS- 290 (352)
T ss_pred EEEEEEEeccCC-----------CCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-
Confidence 999999853210 11223467999999999999999999999999999999999999999999998764
Q ss_pred CCCCCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccc
Q 001657 310 RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (1036)
Q Consensus 310 ~~~~~~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~d 375 (1036)
.|||||+|+||+||+|+|||||+|+||+||||+..+++||++||+||++|++|+|+|.+|.+
T Consensus 291 ----~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 291 ----PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred ----CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 49999999999999999999999999999999999999999999999999999999999964
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.5e-75 Score=665.51 Aligned_cols=337 Identities=64% Similarity=0.967 Sum_probs=305.6
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCceeeec-ceeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEee
Q 001657 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (1036)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~-~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~a 86 (1036)
++|+|+|||||+...|...++..|+.+.++++++.++ .+.|+||+||+++++ |++||+.++.|+|+++++|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTS-QEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCC-HHHHHHHHHHHHHHHHhCCCccceee
Confidence 5899999999999999988999999999999999887 689999999998766 89999999999999999999999999
Q ss_pred eccCCCCcccccccCCCC---CCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCcccccccccCCC
Q 001657 87 YGQTGSGKTYTMGTGLRE---GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (1036)
Q Consensus 87 YGqTgSGKTyTm~G~~~~---~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (1036)
||||||||||||+|+... ...+|||||++++||+.+.......+|.|.|||+|||||.|||||++..
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 149 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST---------- 149 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc----------
Confidence 999999999999997642 5789999999999999999877668999999999999999999998643
Q ss_pred CCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeeecccC
Q 001657 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (1036)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~ 243 (1036)
...+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.......
T Consensus 150 ------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~ 223 (341)
T cd01372 150 ------SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223 (341)
T ss_pred ------cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcc
Confidence 12357899999999999999999999999999999999999999999999999999999999999986542110
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCChh
Q 001657 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (1036)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkL 323 (1036)
. ....+.......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+.+++ +..|||||+|+|
T Consensus 224 ~----~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~L 297 (341)
T cd01372 224 A----PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKL 297 (341)
T ss_pred c----cccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHH
Confidence 0 0111233457889999999999999999999999999999999999999999999998753 356999999999
Q ss_pred hhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhccc
Q 001657 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (1036)
Q Consensus 324 TrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik 367 (1036)
|+||+|+|||||+|+||+||||+..+++||++||+||+||++||
T Consensus 298 T~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 298 TRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999997
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=5.5e-74 Score=650.98 Aligned_cols=323 Identities=48% Similarity=0.713 Sum_probs=293.4
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCceeeec---------ceeEEcceeeCCCCCCccccccccchhhHHHhhcC
Q 001657 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (1036)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~---------~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G 79 (1036)
+|+|+|||||+...|...++..++.+.++..+|.+. .+.|.||+||+++++ |++||+.++.|+|+++++|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNST-QEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCcc-HHHHHHHHHHHHHHHHhCC
Confidence 799999999999999888888888887776665542 367999999998866 8999999999999999999
Q ss_pred CCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCcccccccc
Q 001657 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (1036)
Q Consensus 80 ~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~ 159 (1036)
||+||||||+|||||||||+|+..+...+|||||++++||..+..... ..|.|+|||+|||||.|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~------ 153 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ------ 153 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC------
Confidence 999999999999999999999877677899999999999999987543 7899999999999999999997532
Q ss_pred cCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeee
Q 001657 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (1036)
Q Consensus 160 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~ 239 (1036)
..++.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|++...
T Consensus 154 ------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 154 ------------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred ------------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 23688999999999999999999999999999999999999999999999999999999999998543
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCC
Q 001657 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (1036)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyR 319 (1036)
.. ........|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+|++++ ..|||||
T Consensus 222 ~~-----------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~----~~~ipyR 286 (333)
T cd01371 222 GE-----------DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK----STHIPYR 286 (333)
T ss_pred cC-----------CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC----CCcCCCc
Confidence 11 11234678999999999999999999999999999999999999999999998754 3599999
Q ss_pred CChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001657 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1036)
Q Consensus 320 dSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~I 366 (1036)
+||||+||+|+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus 287 ~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 287 DSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999987
No 16
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=6e-74 Score=647.41 Aligned_cols=308 Identities=42% Similarity=0.620 Sum_probs=277.9
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCceeee-------------cceeEEcceeeCCCCCCccccccccchhhHH
Q 001657 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVD 74 (1036)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~-------------~~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~ 74 (1036)
.+|+|+|||||+.+.|...+...++.+.++ ..+.+ ..+.|+||+||+++++ |++||+.++.|+|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vf~~~~~plv~ 78 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVT-NEEVYRSTVKPLIP 78 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCC-HHHHHHHHHHHHHH
Confidence 379999999999999987666666655544 22222 1478999999998876 89999999999999
Q ss_pred HhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCccc
Q 001657 75 GLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (1036)
Q Consensus 75 ~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~ 154 (1036)
++++|||+||||||||||||||||+|+. ..+|||||++++||+.+.... ..|.|+|||+|||||.|+|||++.
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~-- 151 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGDE---NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDR-- 151 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCcC---CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCc--
Confidence 9999999999999999999999999964 569999999999999998754 689999999999999999999752
Q ss_pred ccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEE
Q 001657 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (1036)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v 234 (1036)
+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|
T Consensus 152 ------------------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v 213 (322)
T cd01367 152 ------------------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIIL 213 (322)
T ss_pred ------------------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccC-CCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCC
Q 001657 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (1036)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~-~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~ 313 (1036)
.+... ....|+|+|||||||||...++ ..|.+++|+.+||+||++|++||.+|+.++
T Consensus 214 ~~~~~-----------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~----- 271 (322)
T cd01367 214 KNKKL-----------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK----- 271 (322)
T ss_pred EEecC-----------------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-----
Confidence 87421 3467999999999999998765 578999999999999999999999998765
Q ss_pred CcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001657 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1036)
Q Consensus 314 ~~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar 364 (1036)
.||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|++
T Consensus 272 ~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 272 AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 499999999999999999999999999999999999999999999999985
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.4e-73 Score=646.71 Aligned_cols=320 Identities=44% Similarity=0.710 Sum_probs=294.0
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCceeeec----ceeEEcceeeCCCCCCccccccccchhhHHHhhcCCCcc
Q 001657 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (1036)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~----~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~t 83 (1036)
.+|+|+|||||+...|...+...|+.+.++ ..|.+. .+.|.||+||+++++ |++||+.++.|+|+++++|||+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNTT-QEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCCC-HHHHHHHHHHHHHHHHHcCccce
Confidence 589999999999999977777788877665 455554 579999999998766 89999999999999999999999
Q ss_pred EeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCcccccccccCCC
Q 001657 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (1036)
|||||+|||||||||+|+......+|||||++++||+.+.......+|.|++||+|||||.|+|||++.
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------- 148 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS----------- 148 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc-----------
Confidence 999999999999999998776678999999999999999987777889999999999999999999764
Q ss_pred CCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeeecccC
Q 001657 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (1036)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~ 243 (1036)
...+.+++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 --------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~--- 217 (325)
T cd01369 149 --------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE--- 217 (325)
T ss_pred --------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC---
Confidence 246889999999999999999999999999999999999999999999999999999999999875321
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCChh
Q 001657 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (1036)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkL 323 (1036)
......|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+|+.+++ .|||||||+|
T Consensus 218 -----------~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~----~~vpyR~S~L 282 (325)
T cd01369 218 -----------TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS----THIPYRDSKL 282 (325)
T ss_pred -----------CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC----CcCCCccCHH
Confidence 1235789999999999999999999999999999999999999999999997652 5999999999
Q ss_pred hhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001657 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1036)
Q Consensus 324 TrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~I 366 (1036)
|+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 283 T~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 283 TRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.5e-72 Score=635.52 Aligned_cols=308 Identities=39% Similarity=0.621 Sum_probs=277.1
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCc----eeee-------cceeEEcceeeCCCCCCccccccccchhhHHHhh
Q 001657 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP----QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (1036)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~----~v~~-------~~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l 77 (1036)
+|+|+|||||+.+.|. +...|+.+...++ .+.+ ..+.|.||+||+++++ |++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECT-QEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCC-HHHHHHHHHHHHHHHHh
Confidence 5899999999998883 3455666654422 3332 2368999999998865 89999999999999999
Q ss_pred cCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCcccccc
Q 001657 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (1036)
Q Consensus 78 ~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~ 157 (1036)
+|||+||||||||||||||||+|++. .+|||||++++||+.++.. ...|.|+|||+|||||.|||||++..
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~~---~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~---- 148 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDPN---EPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAK---- 148 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCcC---ccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCC----
Confidence 99999999999999999999999654 6999999999999988763 36799999999999999999997632
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEee
Q 001657 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (1036)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (1036)
..+.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 149 ---------------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 213 (319)
T cd01376 149 ---------------KELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP 213 (319)
T ss_pred ---------------CCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEE
Confidence 45889999999999999999999999999999999999999999999999999999999999875
Q ss_pred eecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCccc
Q 001657 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (1036)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iP 317 (1036)
.. .....|+|+|||||||||..+++..|.+++|+.+||+||.+||+||.+|+.+. .|||
T Consensus 214 ~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ip 272 (319)
T cd01376 214 AS----------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIP 272 (319)
T ss_pred CC----------------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCC
Confidence 31 12568999999999999999999999999999999999999999999998754 4999
Q ss_pred CCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001657 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1036)
Q Consensus 318 yRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar 364 (1036)
||||+||+||+|+|||||+|+||+||||+..+++||++||+||+|||
T Consensus 273 yr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 273 YRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.2e-72 Score=636.43 Aligned_cols=319 Identities=39% Similarity=0.590 Sum_probs=280.2
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCceeee---------------cceeEEcceeeCCCCCCccccccccchhhH
Q 001657 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (1036)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~---------------~~~~F~FD~Vf~~~~t~q~~vy~~~v~plV 73 (1036)
+|+|+|||||+...+. .++.+.+.+.++.+ ..+.|+||+||++ ++ |++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~-q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-AS-QEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CC-HHHHHHHHHHHHH
Confidence 5899999999998442 12233333222111 2368999999998 54 9999999999999
Q ss_pred HHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCcc
Q 001657 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (1036)
Q Consensus 74 ~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~ 153 (1036)
+++++|||+||||||+|||||||||+|+..+...+|||||++++||..++.. ....|.|+|||+|||||.|||||++..
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCc
Confidence 9999999999999999999999999998766678999999999999999874 466899999999999999999998754
Q ss_pred cccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEE
Q 001657 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (1036)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~ 233 (1036)
.. ....+.+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+
T Consensus 153 ~~-------------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~ 219 (334)
T cd01375 153 EA-------------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIH 219 (334)
T ss_pred cc-------------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEE
Confidence 21 12346789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCC
Q 001657 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (1036)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~ 313 (1036)
|.+.... +.+.....|+|+|||||||||..++++.|..++|+.+||+||++|++||.+|+.+. .
T Consensus 220 v~~~~~~------------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~----~ 283 (334)
T cd01375 220 LESRSRE------------AGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA----R 283 (334)
T ss_pred EEEEecC------------CCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC----C
Confidence 9985421 11235678999999999999999999999999999999999999999999999765 3
Q ss_pred CcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001657 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1036)
Q Consensus 314 ~~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar 364 (1036)
.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus 284 ~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 284 THVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999999999984
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.6e-72 Score=633.75 Aligned_cols=317 Identities=41% Similarity=0.676 Sum_probs=284.0
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCceeeec----ceeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccE
Q 001657 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATV 84 (1036)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~----~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti 84 (1036)
+|+|+|||||+...|. .+...++.+..+ ..+.+. ...|.||+||+++++ |++||+.++.|+|+++++|||+||
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~vf~~~~~-q~~vy~~~~~p~v~~~l~G~n~~i 77 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRVFGGEST-NREVYERIAKPVVRSALEGYNGTI 77 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeEECCCCC-HHHHHHHHHHHHHHHHHCCCceeE
Confidence 6999999999999886 334445555555 344432 589999999998866 899999999999999999999999
Q ss_pred eeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCcccccccccCCCC
Q 001657 85 LAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHA 164 (1036)
Q Consensus 85 ~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~ 164 (1036)
||||+|||||||||+|+. ..+|||||++++||..+.... ...|.|+|||+|||||.|||||++..
T Consensus 78 ~ayG~tgSGKT~T~~G~~---~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~----------- 142 (321)
T cd01374 78 FAYGQTSSGKTFTMSGDE---QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP----------- 142 (321)
T ss_pred EeecCCCCCCceeccCCC---CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC-----------
Confidence 999999999999999964 568999999999999998754 66899999999999999999998642
Q ss_pred CccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeeecccCC
Q 001657 165 GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244 (1036)
Q Consensus 165 ~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~ 244 (1036)
.++.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.....
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--- 211 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--- 211 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC---
Confidence 468999999999999999999999999999999999999999999999999999999999999854211
Q ss_pred CCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCChhh
Q 001657 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLT 324 (1036)
Q Consensus 245 ~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLT 324 (1036)
+.......|+|+|||||||||..+++ .|.+++|+.+||+||.+|++||.+|+.+.. ..|||||+|+||
T Consensus 212 --------~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT 279 (321)
T cd01374 212 --------SESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLT 279 (321)
T ss_pred --------CCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHH
Confidence 12245678999999999999999988 899999999999999999999999998752 359999999999
Q ss_pred hhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001657 325 RLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1036)
Q Consensus 325 rlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~I 366 (1036)
+||+|+|||||+|+|||||||...+++||++||+||+||++|
T Consensus 280 ~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 280 RILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.5e-70 Score=620.18 Aligned_cols=320 Identities=43% Similarity=0.671 Sum_probs=287.4
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCC-ceeeec-----ceeEEcceeeCCCCCCccccccccchhhHHHhhcCCC
Q 001657 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGN-PQVQIG-----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN 81 (1036)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~-~~v~~~-----~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N 81 (1036)
++|+|+|||||+...|. .....++.+..+. ..+.+. .+.|+||+||+++++ |++||+. +.|+|+++++|+|
T Consensus 2 ~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~-q~~v~~~-v~p~v~~~~~G~~ 78 (329)
T cd01366 2 GNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDAS-QEDVFEE-VSPLVQSALDGYN 78 (329)
T ss_pred CCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCC-HHHHHHH-HHHHHHHHhCCCc
Confidence 68999999999999886 3334456666553 444432 368999999998765 8999997 6999999999999
Q ss_pred ccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcc-cceEEEEeehhhhhhhhhhhccCCccccccccc
Q 001657 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~ 160 (1036)
+||||||+|||||||||+|+. ..+|||||++++||..+..... ...|.|++||+|||||.|+|||++..
T Consensus 79 ~~i~ayG~tgSGKT~tl~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~------- 148 (329)
T cd01366 79 VCIFAYGQTGSGKTYTMEGPP---ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP------- 148 (329)
T ss_pred eEEEEeCCCCCCCcEEecCCC---CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc-------
Confidence 999999999999999999964 6699999999999999988654 67899999999999999999998643
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeeec
Q 001657 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (1036)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~ 240 (1036)
...+++.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 ---------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~ 219 (329)
T cd01366 149 ---------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ 219 (329)
T ss_pred ---------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC
Confidence 12467999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 001657 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (1036)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRd 320 (1036)
......|+|+||||||||+..++++.|.+++|+.+||+||.+|++||.+|+.+. .|||||+
T Consensus 220 --------------~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~-----~~ipyr~ 280 (329)
T cd01366 220 --------------TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKD-----SHVPYRN 280 (329)
T ss_pred --------------CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCC-----CcCCCcc
Confidence 234678999999999999999999999999999999999999999999998763 4999999
Q ss_pred ChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccC
Q 001657 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQN 368 (1036)
Q Consensus 321 SkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~ 368 (1036)
|+||+||+|+|||||+|+||+||||...+++||++||+||++|+.|++
T Consensus 281 S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 281 SKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred cHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999999987
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4.1e-70 Score=621.60 Aligned_cols=327 Identities=49% Similarity=0.763 Sum_probs=298.3
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCc-eeee-------cceeEEcceeeCCCCCCccccccccchhhHHHhhcCC
Q 001657 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP-QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (1036)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~-~v~~-------~~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~ 80 (1036)
+|+|+|||||+...|...+...++.+.++.+ .+.+ ....|+||+||+++++ |++||+.++.|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~-q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATAS-QEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCC-hHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999998888888888877654 3443 2378999999998765 89999999999999999999
Q ss_pred CccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCccccccccc
Q 001657 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~ 160 (1036)
|+|||+||+|||||||||+|+ ...+||||+++++||..+........|.|+|||+|||+|.|+|||++.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~---~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~-------- 148 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT---PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS-------- 148 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC---CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--------
Confidence 999999999999999999995 356899999999999999887667899999999999999999999763
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeeec
Q 001657 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (1036)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~ 240 (1036)
+.++.|++++++++++.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 149 -----------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~- 216 (335)
T smart00129 149 -----------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIK- 216 (335)
T ss_pred -----------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEec-
Confidence 24689999999999999999999999999999999999999999999999999999999999997521
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 001657 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (1036)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRd 320 (1036)
+........|+|+|||||||||....++.|.+++|+..||+||.+|++||.+|+++. +..|||||+
T Consensus 217 -----------~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~---~~~~ip~r~ 282 (335)
T smart00129 217 -----------NSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ---KSRHIPYRD 282 (335)
T ss_pred -----------CCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC---CCCCCCCcC
Confidence 112345788999999999999999999999999999999999999999999999753 256999999
Q ss_pred ChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 001657 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (1036)
Q Consensus 321 SkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn 373 (1036)
|+||+||+++|||+++|+||+||||...+++||++||+||+++++|+|+|++|
T Consensus 283 S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 283 SKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999999999999999999999875
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.3e-70 Score=657.90 Aligned_cols=327 Identities=40% Similarity=0.621 Sum_probs=288.6
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCceeee---------cceeEEcceeeCCCCCCccccccccchhhHHHhh
Q 001657 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (1036)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~---------~~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l 77 (1036)
.|+|+|+|||||+.+.+....+...+ ..++...+.+ ..+.|.||+||+|.++ |++||.. +.|+|.++|
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~s-Q~~VF~e-~~~lv~S~l 389 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVI-DTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLAS-QDDVFEE-VSPLVQSAL 389 (670)
T ss_pred hcCceEEEEecCCCcccccccccccc-ccCCcceeEeecCCCCCCCccccceeeeecCCccc-HHHHHHH-HHHHHHHHh
Confidence 37999999999999988654322222 1221111221 1235999999999877 8999998 899999999
Q ss_pred cCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCcccccc
Q 001657 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (1036)
Q Consensus 78 ~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~ 157 (1036)
+|||+||||||||||||||||.|+ ....+|||||++.+||..+......+.|.+.+||+|||||.|+|||++.+
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~---- 463 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES---- 463 (670)
T ss_pred cCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc----
Confidence 999999999999999999999886 55679999999999999999998899999999999999999999997643
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEee
Q 001657 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (1036)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (1036)
....+.|+.++++.++|.|++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|...
T Consensus 464 -------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~ 530 (670)
T KOG0239|consen 464 -------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI 530 (670)
T ss_pred -------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc
Confidence 1246789999999999999999999999999999999999999999999999999999999999753
Q ss_pred eecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCccc
Q 001657 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (1036)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iP 317 (1036)
. ...+....+.|+|||||||||++++++.|.|++|+.+||+||++||+||.||+.. ..|||
T Consensus 531 ~--------------~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k-----~~HiP 591 (670)
T KOG0239|consen 531 N--------------ELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK-----RSHIP 591 (670)
T ss_pred c--------------cCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc-----CCCCc
Confidence 1 1234567899999999999999999999999999999999999999999999884 35999
Q ss_pred CCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccccc
Q 001657 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (1036)
Q Consensus 318 yRdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~ 374 (1036)
||+||||+||+|+|||+++|+|+++|||...++.||+++|+||.|++.+...|....
T Consensus 592 yRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~ 648 (670)
T KOG0239|consen 592 YRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQ 648 (670)
T ss_pred ccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccccc
Confidence 999999999999999999999999999999999999999999999999998887543
No 24
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-67 Score=605.49 Aligned_cols=334 Identities=36% Similarity=0.585 Sum_probs=289.8
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCceeee-------------c--ceeEEcceeeCCCCCCccccccccchhh
Q 001657 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------G--THSFTFDHVYGNGGSPSSAMFGECVAPL 72 (1036)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~-------------~--~~~F~FD~Vf~~~~t~q~~vy~~~v~pl 72 (1036)
..|.|+||+||+.+.....| |+.|......+-. + .+.|+|.+||+|+++ |.+||+.|+.|+
T Consensus 31 d~v~v~~rvrP~~~~~~~~g---~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~t-Q~dvF~~~~~pl 106 (809)
T KOG0247|consen 31 DPVLVVCRVRPLSDASEDEG---CLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVT-QADVFDTTVAPL 106 (809)
T ss_pred cchheeEeecCCCCCccccc---eEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCcc-HHHHHHHHhHHH
Confidence 47999999999986333334 4444433222211 1 257999999999876 899999999999
Q ss_pred HHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhh---------------------------
Q 001657 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL--------------------------- 125 (1036)
Q Consensus 73 V~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~--------------------------- 125 (1036)
|.+++.|.|..+|+||.|||||||||+|++ ..+||+||+++.||+.|...
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~~---~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGTP---DRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecCC---CCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999954 45899999999999998531
Q ss_pred -------------------------------------cccceEEEEeehhhhhhhhhhhccCCcccccccccCCCCCccc
Q 001657 126 -------------------------------------RHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVS 168 (1036)
Q Consensus 126 -------------------------------------~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~ 168 (1036)
..+..|.|+|||+|||||-|||||.+.+... +
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~------~----- 252 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQG------K----- 252 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccc------h-----
Confidence 0124599999999999999999998754211 1
Q ss_pred cCCCC-CceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeeecccCCCCC
Q 001657 169 ISGRP-PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDN 247 (1036)
Q Consensus 169 ~~~~~-~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~~~~ 247 (1036)
++ ...+++|.+|..||.|+++|.|+|.+|++.+|..|...|++++|..|+.|||||+||+|.|.+...
T Consensus 253 ---~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~-------- 321 (809)
T KOG0247|consen 253 ---LQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPR-------- 321 (809)
T ss_pred ---hhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccc--------
Confidence 12 256889999999999999999999999999999999999999999999999999999999998432
Q ss_pred CCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCChhhhhh
Q 001657 248 GTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLL 327 (1036)
Q Consensus 248 ~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrlL 327 (1036)
.........|.|.|||||||||..+|.+.|.|++||++||.||++||+||.+|..+++.+...+|||||||||+++
T Consensus 322 ----~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlf 397 (809)
T KOG0247|consen 322 ----SQDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLF 397 (809)
T ss_pred ----ccccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHH
Confidence 1234567889999999999999999999999999999999999999999999999888777789999999999999
Q ss_pred hccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccccc
Q 001657 328 QDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (1036)
Q Consensus 328 qdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~ 374 (1036)
+.+|.|+.+.+||+||+|.+.+|+|+++.|+||..|..|-+++.++.
T Consensus 398 q~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~ 444 (809)
T KOG0247|consen 398 KNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIK 444 (809)
T ss_pred HHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccc
Confidence 99999999999999999999999999999999999999999988754
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3e-68 Score=593.85 Aligned_cols=324 Identities=35% Similarity=0.570 Sum_probs=286.4
Q ss_pred CCCCceEEEEEeCCCCcchhccCCceEEEEeCC------Cceeee------cceeEEcceeeCCCCCCccccccccchhh
Q 001657 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHG------NPQVQI------GTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (1036)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~------~~~v~~------~~~~F~FD~Vf~~~~t~q~~vy~~~v~pl 72 (1036)
.+...|.||||=||++.+|....-.++++|+.. +|...+ ..+.|.||++|+..++ ++.||..+++||
T Consensus 205 v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~s-Ne~VYrfTa~Pl 283 (676)
T KOG0246|consen 205 VNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESAS-NELVYRFTAKPL 283 (676)
T ss_pred CccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccc-hHHHHHHhhhHH
Confidence 356789999999999999987666666665332 233222 3479999999998876 899999999999
Q ss_pred HHHhhcCCCccEeeeccCCCCcccccccCCCCC---CccccHHHHHHHHHHHHHhh-cccceEEEEeehhhhhhhhhhhc
Q 001657 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG---FQTGLIPQVMNALFNKIETL-RHQMEFQLHVSFIEILKEEVRDL 148 (1036)
Q Consensus 73 V~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~---~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIynE~v~DL 148 (1036)
|..+|+|--+|.||||||||||||||||+|... ...||--++..|+|..+... -....+.|+|||||||+.+||||
T Consensus 284 V~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDL 363 (676)
T KOG0246|consen 284 VKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDL 363 (676)
T ss_pred HHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhh
Confidence 999999999999999999999999999998743 45699999999999998752 23467999999999999999999
Q ss_pred cCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcee
Q 001657 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHA 228 (1036)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~ 228 (1036)
|+. +..+.+.||.+..+.|.||++..|.+.+|++.+|+.|+..|+++.|..|..||||||
T Consensus 364 L~~--------------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHA 423 (676)
T KOG0246|consen 364 LND--------------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHA 423 (676)
T ss_pred hcc--------------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccce
Confidence 974 346899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccc-cCCCcchhhhhhhhhhhhHHHHHHHHHhhhh
Q 001657 229 IFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKR-TGSDGLRLKEGIHINRGLLALGNVISALGDE 307 (1036)
Q Consensus 229 Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~-t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~ 307 (1036)
||+|.+... .+....++|.||||||+||... +.++..+-.||..||+||+||.-||.||+.+
T Consensus 424 vfQIilr~~-----------------~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~n 486 (676)
T KOG0246|consen 424 VFQIILRKH-----------------GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN 486 (676)
T ss_pred eEeeeeecC-----------------CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCC
Confidence 999999752 1245789999999999999854 4667778889999999999999999999877
Q ss_pred ccCCCCCcccCCCChhhhhhhccCCC-CceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccc
Q 001657 308 KKRREGVHVPYRDSKLTRLLQDSLGG-NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (1036)
Q Consensus 308 ~~~~~~~~iPyRdSkLTrlLqdsLgG-ns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpv 371 (1036)
+. |+|||.||||.+|+|||=| ||+|+||+||||...+.+.||||||||+|++..-+.+.
T Consensus 487 k~-----H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 487 KS-----HLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred CC-----CCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 54 9999999999999999977 99999999999999999999999999999999887765
No 26
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=4.1e-68 Score=605.46 Aligned_cols=322 Identities=48% Similarity=0.747 Sum_probs=279.6
Q ss_pred EeCCCCcchhccCCceEEEEeCC---------CceeeecceeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEe
Q 001657 15 HVRPLIGDERAQGCKECVAVTHG---------NPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVL 85 (1036)
Q Consensus 15 RvRP~~~~e~~~~~~~~v~v~~~---------~~~v~~~~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~ 85 (1036)
||||++..|...+...++.+... ..........|.||+||+++++ |++||+.++.|+|+++|+|||+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDAT-QEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTST-HHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCC-HHHHHHHHHHHHHHHhhcCCceEEE
Confidence 99999999998888777765421 1111223479999999998766 8999999999999999999999999
Q ss_pred eeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhccc--ceEEEEeehhhhhhhhhhhccCCcccccccccCCC
Q 001657 86 AYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQ--MEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (1036)
Q Consensus 86 aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~--~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (1036)
|||+|||||||||+|+ .....+|||||++++||..+...... ..|.|+|||+|||+|.|+|||++...
T Consensus 80 ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~--------- 149 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS--------- 149 (335)
T ss_dssp EEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS---------
T ss_pred eecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc---------
Confidence 9999999999999996 34667999999999999999986654 68999999999999999999987531
Q ss_pred CCccccCCCCCceEEecCCCc-EEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeeeccc
Q 001657 164 AGKVSISGRPPIQIRESSNGV-ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHS 242 (1036)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~-~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~ 242 (1036)
....++.|++++..| ++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+......
T Consensus 150 ------~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~ 223 (335)
T PF00225_consen 150 ------KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPS 223 (335)
T ss_dssp ------STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTT
T ss_pred ------ccccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 113478999999876 9999999999999999999999999999999999999999999999999998653210
Q ss_pred CCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCC-CcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCC
Q 001657 243 VSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS-DGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDS 321 (1036)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~-~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdS 321 (1036)
........|+|+|||||||||..++++ .+.+++|+..||+||.+|++||.+|+.+ ....|||||+|
T Consensus 224 ----------~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~---~~~~~vpyr~S 290 (335)
T PF00225_consen 224 ----------DDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG---SKQSHVPYRDS 290 (335)
T ss_dssp ----------TEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSTSSSCGGGS
T ss_pred ----------ccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc---ccchhhhhhcc
Confidence 000125789999999999999999886 4888999999999999999999999987 23469999999
Q ss_pred hhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001657 322 KLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1036)
Q Consensus 322 kLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~I 366 (1036)
|||+||+|+|||||+|+||+||||+..++++|++||+||+++++|
T Consensus 291 kLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 291 KLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999987
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=7e-67 Score=593.65 Aligned_cols=318 Identities=48% Similarity=0.751 Sum_probs=284.0
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCceeeec---------ceeEEcceeeCCCCCCccccccccchhhHHHhhcC
Q 001657 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (1036)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~~---------~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G 79 (1036)
+|+|+|||||+...| ..+...++.+.++. .|.+. .+.|.||+||+++++ |++||+.++.|+|++++.|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNK-TVTLTPPKDGRKAGPKSFTFDHVFDPNST-QEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCC-EEEEecCccccCcCceEEECCeEEcCCCC-HHHHHHHHHHHHHHHHhCC
Confidence 599999999999877 34556677776643 33332 389999999998766 8999999999999999999
Q ss_pred CCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcc-cceEEEEeehhhhhhhhhhhccCCccccccc
Q 001657 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (1036)
Q Consensus 80 ~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~ 158 (1036)
+|+||||||+|||||||||+|+. ..+||||+++++||..+..... ...|.|++||+|||+|.|+|||++..
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~---~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~----- 149 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSP---KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP----- 149 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-----
Confidence 99999999999999999999954 5699999999999999987543 56899999999999999999998742
Q ss_pred ccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeee
Q 001657 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (1036)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~ 238 (1036)
...++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..
T Consensus 150 ------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~ 217 (328)
T cd00106 150 ------------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRN 217 (328)
T ss_pred ------------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEe
Confidence 13578999999999999999999999999999999999999999999999999999999999999854
Q ss_pred ecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccC
Q 001657 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (1036)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPy 318 (1036)
... .......|+|+||||||||+..+++..|.++.|+..||+||.+|++||.+|+.+.. ..||||
T Consensus 218 ~~~------------~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~ 282 (328)
T cd00106 218 TTN------------DGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPY 282 (328)
T ss_pred cCC------------CCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCC
Confidence 311 01136789999999999999999999999999999999999999999999998752 359999
Q ss_pred CCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001657 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1036)
Q Consensus 319 RdSkLTrlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar 364 (1036)
|+|+||+||+|+|||+|+|+||+||||...+++||++||+||+||+
T Consensus 283 r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 283 RDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999985
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-60 Score=569.37 Aligned_cols=320 Identities=46% Similarity=0.710 Sum_probs=280.7
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCceeee--c-ceeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccE
Q 001657 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--G-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATV 84 (1036)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~--~-~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti 84 (1036)
..++|.++..|-...+. +........+.. . ...|.||+||++.++ |++||+.++.|+++.++.||||||
T Consensus 22 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~-q~~v~e~~~~~l~~~~l~g~N~Tv 93 (568)
T COG5059 22 SDIKSTIRIIPGELGER-------LINTSKKSHVSLEKSKEGTYAFDKVFGPSAT-QEDVYEETIKPLIDSLLLGYNCTV 93 (568)
T ss_pred cCceEEEeecCCCcchh-------eeecccccccccccccceEEEEeeccCCCCc-HHHHHHHhhhhHHHHHHhcccceE
Confidence 46677777777655531 111111111111 1 457999999999876 999999999999999999999999
Q ss_pred eeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhhhhhccCCcccccccccCCCC
Q 001657 85 LAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHA 164 (1036)
Q Consensus 85 ~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~ 164 (1036)
||||||||||||||.|.. ..+||||+++..||+.++.......|.|.|||+|||||+++|||.|...
T Consensus 94 fayGqTgsgKtyt~~G~~---~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~---------- 160 (568)
T COG5059 94 FAYGQTGSGKTYTMSGTE---EEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEE---------- 160 (568)
T ss_pred EEEcccCCCceeEeecCc---cccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccc----------
Confidence 999999999999998854 6799999999999999999877778999999999999999999987541
Q ss_pred CccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEEEEEEEeeeecccCC
Q 001657 165 GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244 (1036)
Q Consensus 165 ~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~ 244 (1036)
.+.++++..++++|.|++++.|.+.+|++.+|.+|..+|++++|.+|..|||||+||+|++.+..+..
T Consensus 161 ---------~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~--- 228 (568)
T COG5059 161 ---------SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS--- 228 (568)
T ss_pred ---------cccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCc---
Confidence 26689999999999999999999999999999999999999999999999999999999999865421
Q ss_pred CCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCChhh
Q 001657 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLT 324 (1036)
Q Consensus 245 ~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLT 324 (1036)
.....++|+||||||||++..++..+.+++||..||+||++||+||++|.+.. +..|||||+||||
T Consensus 229 -----------~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~---~~~~ipyReskLT 294 (568)
T COG5059 229 -----------GTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKK---KSGHIPYRESKLT 294 (568)
T ss_pred -----------cceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccc---cCCccchhhhHHH
Confidence 11223799999999999999999999999999999999999999999999752 3569999999999
Q ss_pred hhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccccc
Q 001657 325 RLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (1036)
Q Consensus 325 rlLqdsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kpvvn~ 374 (1036)
|+|+++|||+|+|+|||||+|+..++++|.+||+||+||+.|+|+|.+|.
T Consensus 295 RlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 295 RLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 99999999999999999999999999999999999999999999999996
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=3.4e-48 Score=404.54 Aligned_cols=179 Identities=50% Similarity=0.806 Sum_probs=163.3
Q ss_pred cccccchhhHHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhh
Q 001657 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (1036)
Q Consensus 64 vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE 143 (1036)
||+.++ |+|+.+++|||+||||||||||||||||+|+. .++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~---~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR---EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC---CCCCcchHHHHH--------------------------
Confidence 899988 99999999999999999999999999999964 578999999987
Q ss_pred hhhhccCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCC
Q 001657 144 EVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223 (1036)
Q Consensus 144 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~S 223 (1036)
++.+|..|..+|.+++|.+|..|
T Consensus 58 ---------------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~S 80 (186)
T cd01363 58 ---------------------------------------------------------VIDLMDKGNANRTTAATAMNEHS 80 (186)
T ss_pred ---------------------------------------------------------HHHHHhhccccccccccCCCCcc
Confidence 67788899999999999999999
Q ss_pred CCceeEEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHH
Q 001657 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303 (1036)
Q Consensus 224 SRSH~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~a 303 (1036)
||||+||+|+|.+..... ........++|+||||||||+.+++++.+.+++|+.+||+||.+|++||.+
T Consensus 81 SRsH~i~~i~v~~~~~~~-----------~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~ 149 (186)
T cd01363 81 SRSHSVFRIHFGGKNALA-----------SATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISA 149 (186)
T ss_pred CcccEEEEEEEEEeecCC-----------CCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999854321 112345789999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcccCCCChhhhhhhccCCCCceeEEEeecCC
Q 001657 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISP 345 (1036)
Q Consensus 304 L~~~~~~~~~~~iPyRdSkLTrlLqdsLgGns~t~mI~~vSP 345 (1036)
|+... .||||||||||+||+|+|||||+|+||+||||
T Consensus 150 l~~~~-----~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 150 LAERD-----SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HhcCC-----CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 98754 49999999999999999999999999999999
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.8e-33 Score=356.05 Aligned_cols=481 Identities=18% Similarity=0.193 Sum_probs=411.3
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccccc
Q 001657 367 QNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQ 446 (1036)
Q Consensus 367 k~kpvvn~d~~~~ei~~Lr~ei~~Lq~eL~~~~~~~~~~e~~~L~eki~~L~~e~~~L~~eL~~~~~~la~~Ee~~~~~~ 446 (1036)
++||.+.+.....+|.++..++..++.++... .....+++.....+..+..+|..+|+.+++.++++++.+..
T Consensus 826 kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~-----e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~-- 898 (1930)
T KOG0161|consen 826 KVKPLLKVTKTEEEMRAKEEEIQKLKEELQKS-----ESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLER-- 898 (1930)
T ss_pred HHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 78899999999999999999999999999665 67788899999999999999999999999999988877332
Q ss_pred CCCcccccchhhhhccccccccchhhhhhhhcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccH
Q 001657 447 EGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDT 526 (1036)
Q Consensus 447 ~~~~~~~~~~~L~~~~~~l~~~~~~l~e~l~~~~~~~~eee~~~~e~~~~q~kl~~El~eL~k~Le~kE~~~~~~~~~~~ 526 (1036)
+.... ..++..+.+...+..+++.....+....+++++++.+|+++|++.|..+.+ .
T Consensus 899 -----------~~~~k-------~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k-----~ 955 (1930)
T KOG0161|consen 899 -----------LRAEK-------QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQK-----L 955 (1930)
T ss_pred -----------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 22222 223333333333333666667777777888999999999999999999844 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHK 606 (1036)
Q Consensus 527 ~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K 606 (1036)
...++..+.+|..|++++..+ ++.+.||.++++.....+....++|+.++++...+.|.+.|
T Consensus 956 ~~Ek~~~e~~~~~l~~e~~~~------------------~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~k 1017 (1930)
T KOG0161|consen 956 ELEKNAAENKLKNLEEEINSL------------------DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAK 1017 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777788777777776 56667777777666667777779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHH
Q 001657 607 SDEAAKRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQ---RQKMVLQR 680 (1036)
Q Consensus 607 ~E~~~~~L~~ei~~lk~~kv~L---~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~---~q~~vLqR 680 (1036)
+|.++.+|+..+++.++.+.++ +||+.++++.++++.......+..|..++++++.|+++|++..+ ...+.+++
T Consensus 1018 le~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k 1097 (1930)
T KOG0161|consen 1018 LEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQK 1097 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999998 79999999999999999999999999999999999999999544 44455999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 001657 681 KTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADE 759 (1036)
Q Consensus 681 K~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~E 759 (1036)
+++|+++.+++|.++|+.+|++++|+++.++| |.+|++.+ .+++|+.+++.+|++++++++.|
T Consensus 1098 ~i~eL~~~i~el~e~le~er~~r~K~ek~r~d----------------L~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e 1161 (1930)
T KOG0161|consen 1098 QIKELEARIKELEEELEAERASRAKAERQRRD----------------LSEELEELKEELEEQGGTTAAQLELNKKREAE 1161 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999 89999999999999999999999
Q ss_pred HHHHHHhhhhhcC--CCCCCCCcCCccccccCChhHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhhhccccchh
Q 001657 760 LTILKQVDQLSLN--GHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNH 837 (1036)
Q Consensus 760 l~~Lk~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~~~~~~k~r~~~ 837 (1036)
+.+|++.++.... +......+.+|.+.+.. +..++++++...+...+....|+.+++++. ..
T Consensus 1162 ~~~l~~~leee~~~~e~~~~~lr~~~~~~~~e----l~~qle~l~~~k~~lekek~~lq~e~~~l~------------~e 1225 (1930)
T KOG0161|consen 1162 VQKLRRDLEEETLDHEAQIEELRKKHADSLAE----LQEQLEQLQKDKAKLEKEKSDLQREIADLA------------AE 1225 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
Confidence 9999998887665 44445555555444333 377777777777777777777777777775 67
Q ss_pred hccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 001657 838 LRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSS 917 (1036)
Q Consensus 838 i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q 917 (1036)
+..+..++..++++++.++. ++.|++.++.++.+++.+|..+..++..|++++.++++++|.+++.+++.++++++|
T Consensus 1226 v~~~~~~k~~~e~~~k~~E~---~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~q 1302 (1930)
T KOG0161|consen 1226 LEQLSSEKKDLEKKDKKLEA---QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQ 1302 (1930)
T ss_pred HHHHhhhhccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999988887 999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcC
Q 001657 918 WRSSKHFADDMSG 930 (1036)
Q Consensus 918 ~~~~k~~~~e~~~ 930 (1036)
++++++++++..-
T Consensus 1303 le~~k~qle~e~r 1315 (1930)
T KOG0161|consen 1303 LEELKRQLEEETR 1315 (1930)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998653
No 31
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.79 E-value=1.2e-20 Score=236.95 Aligned_cols=251 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCch
Q 001657 646 REKELLKLKKEGRKNEFERHKLEALNQRQ---KMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNE 722 (1036)
Q Consensus 646 ~ekei~qLk~~~rK~e~Ei~~L~~~~~~q---~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~ 722 (1036)
+++.+..|...++|++.||+.+.+..+.. .+.|+++++|+++.|.+|+++|+++|.+|.|+++.++|
T Consensus 2 ~~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~d---------- 71 (859)
T PF01576_consen 2 LERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRD---------- 71 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 45567779999999999999999955544 44599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC--CCCCCCCcCCccccccCChhHHHHHHH
Q 001657 723 KSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLN--GHSPQRGKNGHSRLSSLSPNARMERIA 799 (1036)
Q Consensus 723 ~~~~~Wl~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~r~~qi~ 799 (1036)
|..||+.+ ..|+|+++++.+|+++++++++||.+||+++++... +.....++.+|.+.+... +.+|+
T Consensus 72 ------L~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL----~eqle 141 (859)
T PF01576_consen 72 ------LSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAEL----NEQLE 141 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------HHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHH
Confidence 99999999 899999999999999999999999999999988666 677888999998887776 99999
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001657 800 SLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDL 879 (1036)
Q Consensus 800 ~Lq~~~~~~~~~~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el 879 (1036)
+++..+.+.+++...|..+++++. ..+.++..+|...++.++.+.. ++.+++.++++.++.+++|
T Consensus 142 ~lqk~k~~lEK~k~~l~~e~~dL~------------~~l~~~~k~k~~~Ek~~K~lE~---qL~El~~klee~er~~~el 206 (859)
T PF01576_consen 142 QLQKQKAKLEKEKSQLEAELDDLQ------------AQLDSLQKAKQEAEKKRKQLEA---QLNELQAKLEESERQRNEL 206 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHhHHhhHHH---HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999996 8899999999999999999988 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcCC
Q 001657 880 VALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSGP 931 (1036)
Q Consensus 880 ~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~~ 931 (1036)
...+.++++++.+|.+++++.+.+++.|.+.++++.+||+++++++++-+.-
T Consensus 207 ~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~ 258 (859)
T PF01576_consen 207 TEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRA 258 (859)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhh
Confidence 9999999999999999999999999999999999999999999999998763
No 32
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.57 E-value=4.7e-10 Score=146.81 Aligned_cols=373 Identities=20% Similarity=0.185 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 533 FGKKIMELEEEKRIVQQERDRLLAEIENL------AANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHK 606 (1036)
Q Consensus 533 ~e~ki~~Le~ei~~lqkErd~Ll~~l~~~------~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K 606 (1036)
++..|..+++.+.+|.+|++.+++.+..+ ++++..+.+|+...++..+++++ ..|.++.....++.|.++|
T Consensus 969 l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le---~~le~e~~~r~e~Ek~~rk 1045 (1930)
T KOG0161|consen 969 LEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLE---VTLEREKRIRMELEKAKRK 1045 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888888888877776 23455677888888888888888 8888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHH
Q 001657 607 SDEAAKRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMV---LQR 680 (1036)
Q Consensus 607 ~E~~~~~L~~ei~~lk~~kv~L---~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~v---LqR 680 (1036)
++.+++.+++.+..++.++.+| .++.+.|+.....-......++.+|.++.+..+..|..|....+...+. +.|
T Consensus 1046 le~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek 1125 (1930)
T KOG0161|consen 1046 LEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAER 1125 (1930)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 6666788888888888999999999999999999888888866666554 888
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhhhcccccCCCCCCCCCCchHHHHHHHHHH-------HHHH-HhHHHHHHHHHHHHH
Q 001657 681 KTEEAAIATKRLKELLEAR-KSSARENSVNSTGYTTPTGQSNEKSLQKWLEHE-------LEVS-ANVHEVRFKYEKQSQ 751 (1036)
Q Consensus 681 K~eE~~a~~krLke~Le~e-k~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~E-------LE~l-~~l~E~~~~~~~q~e 751 (1036)
+-.++......|++.|+-. .+..++.+..... ...-..+.+=+.++ ++.+ ....+....++.|++
T Consensus 1126 ~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~------e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle 1199 (1930)
T KOG0161|consen 1126 QRRDLSEELEELKEELEEQGGTTAAQLELNKKR------EAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLE 1199 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888754 2222222211100 00000111111111 1111 122223333333333
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCcCCccccccCChhHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH------
Q 001657 752 VQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEER------ 825 (1036)
Q Consensus 752 ~r~k~~~El~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r------ 825 (1036)
...+..+.+.+-+..++.... + .....+.+...-..++.+....+.++.+++..+++...-
T Consensus 1200 ~l~~~k~~lekek~~lq~e~~------------~-l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~ 1266 (1930)
T KOG0161|consen 1200 QLQKDKAKLEKEKSDLQREIA------------D-LAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTA 1266 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------H-HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333222222111100 0 000000011111233444444555666666666555321
Q ss_pred HHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 826 ERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVT 905 (1036)
Q Consensus 826 ~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~ 905 (1036)
.+...-...-..-+.+.++...+..+.+.......|+.++..++.+-.+....|...+++++-+...|..++++.....+
T Consensus 1267 q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~ 1346 (1930)
T KOG0161|consen 1267 KRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKN 1346 (1930)
T ss_pred HHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222234456667777777777777777778999999999999999999999999999999999999999999988
Q ss_pred HHHhhhhhhccchHHHHHHHhh
Q 001657 906 IALASSASQGSSWRSSKHFADD 927 (1036)
Q Consensus 906 ~l~~~~~~~~~q~~~~k~~~~e 927 (1036)
-|.+..+.+.+++.+.+...++
T Consensus 1347 ~l~r~lsk~~~e~~~~~~k~e~ 1368 (1930)
T KOG0161|consen 1347 ELERKLSKANAELAQWKKKFEE 1368 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666666555554443
No 33
>PRK03918 chromosome segregation protein; Provisional
Probab=99.00 E-value=0.00011 Score=95.22 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=11.9
Q ss_pred eeeccCCCCccccc
Q 001657 85 LAYGQTGSGKTYTM 98 (1036)
Q Consensus 85 ~aYGqTgSGKTyTm 98 (1036)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 47899999999775
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=98.95 E-value=0.00013 Score=94.39 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=12.6
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
..+-+|++|||||..+
T Consensus 25 ~~~i~G~Ng~GKStil 40 (880)
T PRK02224 25 VTVIHGVNGSGKSSLL 40 (880)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3445899999998875
No 35
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.86 E-value=3.9e-10 Score=142.60 Aligned_cols=348 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 001657 566 DGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQW 642 (1036)
Q Consensus 566 ~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L---~rkmk~e~~~~~~~ 642 (1036)
...+..|+..+-..+.+|..+|+.|++.. +.+.|.|..++..+.+|..+|..+.+.|+.. .+++..++..++.-
T Consensus 119 e~~~~~lrkkh~~~~~eL~eqle~lqk~k---~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~k 195 (859)
T PF01576_consen 119 EATLAELRKKHQDAVAELNEQLEQLQKQK---AKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAK 195 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Confidence 34566777888888888998888887554 6799999999999999999999999999988 77888999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCC
Q 001657 643 KASREKELLKLKKEGRKNEFERHKLEALNQ---RQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQ 719 (1036)
Q Consensus 643 ~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~---~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~ 719 (1036)
....++.+..|.....|.+.|+..|....+ .+...|.|...-+.+.+..++..|+.+...+.......+.
T Consensus 196 lee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~------- 268 (859)
T PF01576_consen 196 LEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQ------- 268 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHH-------
Confidence 999999999999999999999998888443 3444588888888899999999999887776666555444
Q ss_pred CchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-C-CCCCCcCCccccccCC---hhH
Q 001657 720 SNEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNG-H-SPQRGKNGHSRLSSLS---PNA 793 (1036)
Q Consensus 720 ~~~~~~~~Wl~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk~~~e~~~~~-~-~~~~~~~~~~~~~~~~---~~~ 793 (1036)
+.+|++.+ ..++|...+...+.-.-.+...++..++...+..... . .....+++....+... .+.
T Consensus 269 ---------le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~ 339 (859)
T PF01576_consen 269 ---------LEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEE 339 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788777 5555444333333333345666777766654433221 1 1112222222211111 233
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHH-------HHHhHHHHHhhHH
Q 001657 794 RMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFN-------VAAETRFQLWEKD 866 (1036)
Q Consensus 794 r~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~-------~~~~~~~ql~E~~ 866 (1036)
....++.|+..+..++..+.++...++.+. -..+..++.....-..+.+.+..+..+.. ..-.....+..+.
T Consensus 340 ~~~~~~~LeK~k~rL~~EleDl~~eLe~~~-~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk 418 (859)
T PF01576_consen 340 ANAKVSSLEKTKKRLQGELEDLTSELEKAQ-AAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLK 418 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345556666666666666666666666553 12223333333333444444444443332 2222224666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcCCCC
Q 001657 867 TEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSGPLS 933 (1036)
Q Consensus 867 ~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~~~~ 933 (1036)
..++++...+..+....+.++.++.++..++.+....+..|-+.+-.|..++.+++.+++|..+.+.
T Consensus 419 ~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~ 485 (859)
T PF01576_consen 419 NELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALE 485 (859)
T ss_dssp -------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888999999999999999999999999999999999999999999998665
No 36
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.83 E-value=0.0014 Score=87.06 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=21.0
Q ss_pred cccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 66 ~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
...+.|++-.+..|+|+.| ||.|||||-.+
T Consensus 12 KSF~~~~~i~f~~~~t~Iv---GPNGSGKSNI~ 41 (1163)
T COG1196 12 KSFADPTEINFSPGFTAIV---GPNGSGKSNIV 41 (1163)
T ss_pred ccCCCCeeeecCCCCeEEE---CCCCCchHHHH
Confidence 3344455556667777765 99999997665
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=98.79 E-value=0.00037 Score=90.30 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=9.1
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 001657 496 WQNTMDKELNELNKRLEQK 514 (1036)
Q Consensus 496 ~q~kl~~El~eL~k~Le~k 514 (1036)
....+...+.++...|+.+
T Consensus 181 ~~~~~~~~~~~~~~~l~~~ 199 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEEK 199 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555443
No 38
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.78 E-value=0.0012 Score=86.67 Aligned_cols=388 Identities=18% Similarity=0.178 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccccccchhhhhh
Q 001657 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL---AANSDGHTQKMQDG 575 (1036)
Q Consensus 499 kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~---~~~~~~~~~Kl~~~ 575 (1036)
.+..++..-+..++..+.++..+- .+...+++.. ..|..+...+..|+..|...+-++ ...........+..
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LK-qE~~ll~~t~----~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~ 802 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLK-QEKLLLKETE----ERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDK 802 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666664443 2333333221 234445555555555554433332 22223344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 576 HTLKLKALEAQILELKKKQES-QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK 654 (1036)
Q Consensus 576 ~~~~l~~LE~el~~L~~e~~~-~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk 654 (1036)
++.++.+|+..+..|+++... ..++-......+.++..++.-|..++.-.. .+..++...+.....++-++..|.
T Consensus 803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~----~~~~~l~~~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 803 CESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELK----SLLTSLDSVSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999888888866444 555666777777777777777777665444 466677777888888888999999
Q ss_pred HHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchHHHHHHH
Q 001657 655 KEGRKNEFERHKLEAL-----NQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWL 729 (1036)
Q Consensus 655 ~~~rK~e~Ei~~L~~~-----~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl 729 (1036)
++++........+.+. ...-..-|+...+++.-...+|+..+..=+...... .-.
T Consensus 879 k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~--------------------~s~ 938 (1822)
T KOG4674|consen 879 KRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEY--------------------SSL 938 (1822)
T ss_pred HHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHH
Confidence 9998888887777641 111111155555555444444444433322222111 114
Q ss_pred HHHHHHH-HhHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhcC--CCCCCCCcCCccccccCChhHHHHHHHHHH
Q 001657 730 EHELEVS-ANVHEVRFKYEKQSQVQAA----LADELTILKQVDQLSLN--GHSPQRGKNGHSRLSSLSPNARMERIASLE 802 (1036)
Q Consensus 730 ~~ELE~l-~~l~E~~~~~~~q~e~r~k----~~~El~~Lk~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq 802 (1036)
.+-|+-+ ..+++.+..+++.++.+++ ++.++..|+.+.+.... ...+..... .......+|+.++
T Consensus 939 eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~--------~~~~~~~e~~sl~ 1010 (1822)
T KOG4674|consen 939 EQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKED--------KLLDLSREISSLQ 1010 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhh--------hHHHHHHHhHHHH
Confidence 4445555 5677777777777776653 55555555554332221 011111000 0123356667777
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001657 803 NMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVAL 882 (1036)
Q Consensus 803 ~~~~~~~~~~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~ 882 (1036)
+....+...+.++..++.++..... ..+..+..|...-+.-.-...+....|..+...+..+..++..|...
T Consensus 1011 ne~~~~~~~~s~~~~~~~~~k~dl~--------~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~ 1082 (1822)
T KOG4674|consen 1011 NELKSLLKAASQANEQIEDLQNDLK--------TETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKS 1082 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666666642111 22233344444333333333444456677777777777777777777
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcCC
Q 001657 883 LKQSEAQRKELVK----QQRMREQAVTIALASSASQGSSWRSSKHFADDMSGP 931 (1036)
Q Consensus 883 ~~~~~~e~~el~~----~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~~ 931 (1036)
....+..+.++.+ +-..++..++-+-.-...|..|..-+-.++++++.+
T Consensus 1083 ~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~ 1135 (1822)
T KOG4674|consen 1083 RESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQ 1135 (1822)
T ss_pred HHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7777777776443 444455566666677777777777777788888875
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=0.00075 Score=90.70 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001657 378 SSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRA 436 (1036)
Q Consensus 378 ~~ei~~Lr~ei~~Lq~eL~~~~~~~~~~e~~~L~eki~~L~~e~~~L~~eL~~~~~~la 436 (1036)
...+..+..++..++...... ..++..++.++..+..+...+..+|......+.
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~-----~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKL-----NKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677777777776544 566777888888888888888888877666655
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.75 E-value=0.0041 Score=82.08 Aligned_cols=269 Identities=18% Similarity=0.210 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccchhhhhhH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 001657 535 KKIMELEEEKRIVQQERDRLLAEIENLAA---NSDGHTQKMQDGH---TLKLKALEAQILELKKKQES----QVELLKQK 604 (1036)
Q Consensus 535 ~ki~~Le~ei~~lqkErd~Ll~~l~~~~~---~~~~~~~Kl~~~~---~~~l~~LE~el~~L~~e~~~----~~~L~K~K 604 (1036)
.++..|+..+..+..|.+.|.++-..+.. ..+..++.+..++ ..++..++.++..|+.+..- ..+|....
T Consensus 689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~ 768 (1822)
T KOG4674|consen 689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666655444421 1123333444443 35677888889999877654 45666677
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (1036)
Q Consensus 605 ~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE 684 (1036)
.++......|+..+..|+.++..+.+---..-.++......+++++..|++++..+..+++.+......+..-++..+.+
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~ 848 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDE 848 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 77777788888888888888877655555556677788999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccc--------------CCCCCCCCCCchHHHHHHHHHHHHHH----HhHHHHHHHH
Q 001657 685 AAIATKRLKELLEARKSSARENSVNS--------------TGYTTPTGQSNEKSLQKWLEHELEVS----ANVHEVRFKY 746 (1036)
Q Consensus 685 ~~a~~krLke~Le~ek~~r~k~e~~~--------------~~~~~~~~~~~~~~~~~Wl~~ELE~l----~~l~E~~~~~ 746 (1036)
+...+..+..+|..-+...++.+-.- .+.+.++......-...-|..+++.+ ..|.++....
T Consensus 849 ~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i 928 (1822)
T KOG4674|consen 849 LESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQI 928 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887765444443322211 11011100001111122256666655 4666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCCccccccCChhHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001657 747 EKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAE 823 (1036)
Q Consensus 747 ~~q~e~r~k~~~El~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e 823 (1036)
....+.-...+.-|..++..+++... ...+.|..+...+..+...+++|..++.++.
T Consensus 929 ~~yqe~~~s~eqsl~~~ks~lde~~~--------------------~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~ 985 (1822)
T KOG4674|consen 929 REYQEEYSSLEQSLESVKSELDETRL--------------------ELEAKIESLHKKITSLEEELSELEKEIENLR 985 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776665544211 1134445555555555555555555555553
No 41
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.75 E-value=0.0026 Score=84.95 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.8
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
+++-+||+|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4567899999999988
No 42
>PRK03918 chromosome segregation protein; Provisional
Probab=98.74 E-value=0.0029 Score=82.08 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 865 KDTEIKEIKEQLNDLVALLKQSEAQRKEL 893 (1036)
Q Consensus 865 ~~~k~~E~~~~~~el~~~~~~~~~e~~el 893 (1036)
++.++.++...+..+...+..+..+.+.+
T Consensus 671 l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 671 LSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 43
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.73 E-value=0.00069 Score=91.04 Aligned_cols=174 Identities=12% Similarity=0.128 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 001657 575 GHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL------QNKIKQEAEQFRQWKASREK 648 (1036)
Q Consensus 575 ~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L------~rkmk~e~~~~~~~~~~~ek 648 (1036)
+.+..+..++.++..|..+. ..+.....+...++..|+..+..++..+.++ ..+++.++..+.........
T Consensus 826 ele~ei~~~~~el~~l~~~~---e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 826 QVNQEKQEKQHELDTVVSKI---ELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444443332 3455666677777888877777777766666 33344444444444444444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCCCCCCCCCchHHHHH
Q 001657 649 ELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVN-STGYTTPTGQSNEKSLQK 727 (1036)
Q Consensus 649 ei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~-~~~~~~~~~~~~~~~~~~ 727 (1036)
++..++.++.--..++.+++....+...-...+.++++..+..++..+..-.......... ..+
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~--------------- 967 (1311)
T TIGR00606 903 EIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG--------------- 967 (1311)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------
Confidence 4444444444444444444444444333333444444444444444333222222111110 011
Q ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001657 728 WLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVD 767 (1036)
Q Consensus 728 Wl~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk~~~ 767 (1036)
....|+.+ ..+......++........+..++..+++.+
T Consensus 968 -~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel 1007 (1311)
T TIGR00606 968 -KDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007 (1311)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444 3444445555555555666666666666543
No 44
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.69 E-value=0.0045 Score=82.68 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=21.5
Q ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 727 KWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1036)
Q Consensus 727 ~Wl~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk~ 765 (1036)
..+..+++.+ ..+.++...+............++..++.
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 712 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE 712 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666 45555555555555545555555544443
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.68 E-value=0.00072 Score=80.01 Aligned_cols=56 Identities=23% Similarity=0.227 Sum_probs=45.5
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001657 856 AETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASS 911 (1036)
Q Consensus 856 ~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~ 911 (1036)
...++||.|..-++.|++..+.-+...+.+++.|+++|..-.+..|..+-+++-.+
T Consensus 406 D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~ 461 (546)
T PF07888_consen 406 DCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEK 461 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33457899999999999998888888899999999998877777777777765554
No 46
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.62 E-value=0.00042 Score=86.62 Aligned_cols=200 Identities=21% Similarity=0.252 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001657 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (1036)
Q Consensus 535 ~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L 614 (1036)
++...+.+....+.++++.|.+.......+. +...|+.....-.-..++.++..-..-++....+...+.++...-+.+
T Consensus 529 ~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~-~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~ 607 (1317)
T KOG0612|consen 529 KKNDNAADSLEKVNSLRKQLEEAELDMRAES-EDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKL 607 (1317)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhH-HHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666666665555443221 133344333333333333333333344455666777788888888888
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 001657 615 QAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERH------KLEALNQRQKMVLQRKTEEA 685 (1036)
Q Consensus 615 ~~ei~~lk~~kv~L---~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~------~L~~~~~~q~~vLqRK~eE~ 685 (1036)
+.+.+..+.++..+ +.-++++.....+.......++..++. +++...|+. .+++.++.+...++..++.+
T Consensus 608 ~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~ 686 (1317)
T KOG0612|consen 608 RSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQE 686 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777665 667777778888888888888887777 655554432 25556666666777777777
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 686 AIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1036)
Q Consensus 686 ~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~ELE~l~~l~E~~~~~~~q~e~r~k~~~El~~Lk~ 765 (1036)
.+..+++ .|..+ ..+--++..||.+.+.+.++...+..++++++..|+.
T Consensus 687 ~~E~~~~--~L~~~-----------------------------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~ 735 (1317)
T KOG0612|consen 687 NAEHHRL--RLQDK-----------------------------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSN 735 (1317)
T ss_pred HHHHHHH--HHhhH-----------------------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhh
Confidence 7776666 22211 1122223356777777888888999999999999987
Q ss_pred hh
Q 001657 766 VD 767 (1036)
Q Consensus 766 ~~ 767 (1036)
+.
T Consensus 736 d~ 737 (1317)
T KOG0612|consen 736 DY 737 (1317)
T ss_pred hh
Confidence 54
No 47
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.60 E-value=0.0031 Score=77.48 Aligned_cols=177 Identities=23% Similarity=0.279 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cccccchhh
Q 001657 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA------NSDGHTQKM 572 (1036)
Q Consensus 499 kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~------~~~~~~~Kl 572 (1036)
.++.++-.++++|++.+.+... ...|+.+|..|+..|+.+...|...+.-+.. .-+....+.
T Consensus 298 tleseiiqlkqkl~dm~~erdt------------dr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e 365 (1195)
T KOG4643|consen 298 TLESEIIQLKQKLDDMRSERDT------------DRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVE 365 (1195)
T ss_pred ChHHHHHHHHHHHHHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHH
Confidence 4667777777777777665422 2266778888888888777777655443311 111122222
Q ss_pred hhh------HHHHHHHH--HHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001657 573 QDG------HTLKLKAL--EAQIL-----ELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL---QNKIKQEA 636 (1036)
Q Consensus 573 ~~~------~~~~l~~L--E~el~-----~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L---~rkmk~e~ 636 (1036)
.+. |+..++.. -..+. +....--++..|.+.+.+++.++..|++.|.++.+++++| -|.+..|.
T Consensus 366 ~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ 445 (1195)
T KOG4643|consen 366 NEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFEL 445 (1195)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11222211 11122 2233444577888888999999999999999999999987 56666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 001657 637 EQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM----VLQRKTEEAAIATKRLKELLEAR 699 (1036)
Q Consensus 637 ~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~----vLqRK~eE~~a~~krLke~Le~e 699 (1036)
++..+......+-... ..++..+.+|.+ .+...++|+.+.++.|+.-|..+
T Consensus 446 ekl~~e~~t~~~s~~r------------q~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r 500 (1195)
T KOG4643|consen 446 EKLLEETSTVTRSLSR------------QSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNR 500 (1195)
T ss_pred HHHHHHHHHHHHhHHH------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444333221 122222222222 13445666666667776666543
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.55 E-value=0.015 Score=77.75 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.0
Q ss_pred eeeccCCCCccccc
Q 001657 85 LAYGQTGSGKTYTM 98 (1036)
Q Consensus 85 ~aYGqTgSGKTyTm 98 (1036)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 44799999999876
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.44 E-value=0.027 Score=75.24 Aligned_cols=94 Identities=20% Similarity=0.313 Sum_probs=57.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhH
Q 001657 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (1036)
Q Consensus 497 q~kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~ 576 (1036)
...+..++..++..|+..+.....+.+.+.+.+... -+++.++..++..++.+.+.|......++...+....++...+
T Consensus 315 ~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~-~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~ 393 (1201)
T PF12128_consen 315 LSALNADLARIKSELDEIEQQKKDYEDADIEQLIAR-VDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAF 393 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666655555544444433333 2456677777777777777777777777666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 001657 577 TLKLKALEAQILELK 591 (1036)
Q Consensus 577 ~~~l~~LE~el~~L~ 591 (1036)
...+..++.++..++
T Consensus 394 ~~~~~~~~~~~~~~~ 408 (1201)
T PF12128_consen 394 NRQQERLQAQQDEIR 408 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655554
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.41 E-value=0.0063 Score=81.35 Aligned_cols=17 Identities=12% Similarity=0.460 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001657 502 KELNELNKRLEQKESEM 518 (1036)
Q Consensus 502 ~El~eL~k~Le~kE~~~ 518 (1036)
..+.+|+.++..++..+
T Consensus 184 ~~l~el~~~~~~L~~q~ 200 (1164)
T TIGR02169 184 ENIERLDLIIDEKRQQL 200 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.35 E-value=0.0059 Score=69.34 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001657 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (1036)
Q Consensus 533 ~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~ 612 (1036)
|=++|..|+.+...| ...+..+..........+...|+..+.++..+|+++.. .+.+++.++.
T Consensus 16 YIekVr~LE~~N~~L-------e~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~----------eka~l~~e~~ 78 (312)
T PF00038_consen 16 YIEKVRFLEQENKRL-------ESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSK----------EKARLELEID 78 (312)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHH---------HHHHHHHHHHHHCHHHHHHHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh-------HHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHH----------HhhHHhhhhh
Confidence 345555555555555 44444443332334566777888888777776666653 3445555556
Q ss_pred HHHHHHHHHHHHHHH
Q 001657 613 RLQAEIQSIKAQKVQ 627 (1036)
Q Consensus 613 ~L~~ei~~lk~~kv~ 627 (1036)
.+..++..++.....
T Consensus 79 ~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 79 NLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 666666555544433
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.29 E-value=0.001 Score=78.73 Aligned_cols=326 Identities=14% Similarity=0.155 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHH
Q 001657 502 KELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLK 581 (1036)
Q Consensus 502 ~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~ 581 (1036)
+||.+||..|. .|=+||..|+.+.+.|+.+.+.|..... .....++..|+.-+-
T Consensus 42 ~El~~LNDRLA-------------------~YIekVR~LEaqN~~L~~di~~lr~~~~-------~~ts~ik~~ye~El~ 95 (546)
T KOG0977|consen 42 KELQELNDRLA-------------------VYIEKVRFLEAQNRKLEHDINLLRGVVG-------RETSGIKAKYEAELA 95 (546)
T ss_pred HHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhhcc-------CCCcchhHHhhhhHH
Confidence 57778876665 3558899999999999888888776654 233456666655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Q 001657 582 ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQF---RQWKASREKELLKLKKEGR 658 (1036)
Q Consensus 582 ~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~---~~~~~~~ekei~qLk~~~r 658 (1036)
..-..|+ ...+-+.+++..+..|.+++..++..--+..+-..+.-++. ......++.++..++...+
T Consensus 96 ~ar~~l~----------e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 96 TARKLLD----------ETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 4443332 33455677888888888888888777666544433333333 3334445555555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 001657 659 KNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSAN 738 (1036)
Q Consensus 659 K~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~ELE~l~~ 738 (1036)
..+.++..| ++.+.-+...+.+++..|+.+...+...+-.-.+ |.+||+.+.+
T Consensus 166 ~le~e~~~L-----------k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~----------------Lleel~f~~~ 218 (546)
T KOG0977|consen 166 ALEDELKRL-----------KAENSRLREELARARKQLDDETLLRVDLQNRVQT----------------LLEELAFLKR 218 (546)
T ss_pred HHHHHHHHH-----------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH----------------HHHHHHHHHh
Confidence 544444444 4555555566666667777766666555433333 6677766643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCCccccccCChhHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 001657 739 VHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQ 818 (1036)
Q Consensus 739 l~E~~~~~~~q~e~r~k~~~El~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq~~~~~~~~~~~~l~~q 818 (1036)
.++.+ ..+++++...+.. ... + ..-.++.-.+++.++.........-...
T Consensus 219 ~h~~e-----I~e~~~~~~rd~t---------------~~~----r------~~F~~eL~~Ai~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 219 IHKQE-----IEEERRKARRDTT---------------ADN----R------EYFKNELALAIREIRAQYEAISRQNRKD 268 (546)
T ss_pred ccHHH-----HHHHHHHHhhccc---------------ccc----h------HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33221 1122222222210 000 0 0111222223333333333222111111
Q ss_pred HHHHHHHHHhhhccccchhh--------ccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 819 LSEAEERERALVGRGRWNHL--------RFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQR 890 (1036)
Q Consensus 819 l~~~e~r~~~~~~k~r~~~i--------~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~ 890 (1036)
|... - +.+...+ -....++-.+..+.......+.+|.+++.+..-+..++.+|.-++. .+.
T Consensus 269 iE~~---Y-----~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~---e~~ 337 (546)
T KOG0977|consen 269 IESW---Y-----KRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD---EDQ 337 (546)
T ss_pred HHHH---H-----HHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh---hhh
Confidence 1111 0 1111222 2345567777777777777777888877777777777777764433 122
Q ss_pred HHHHHHHHHHHHHH--------------HHHHhhhhhhccchHHHHHHHhhhcCC
Q 001657 891 KELVKQQRMREQAV--------------TIALASSASQGSSWRSSKHFADDMSGP 931 (1036)
Q Consensus 891 ~el~~~l~e~E~~~--------------~~l~~~~~~~~~q~~~~k~~~~e~~~~ 931 (1036)
.-+...|.+++..+ ..|.-.+.+|...+.-.+.+|+--..+
T Consensus 338 r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLegee~r 392 (546)
T KOG0977|consen 338 RSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEGEEER 392 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhccccCC
Confidence 22222233333222 455666667777777777777655544
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.26 E-value=0.062 Score=71.75 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=42.0
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHH
Q 001657 853 NVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFA 925 (1036)
Q Consensus 853 ~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~ 925 (1036)
......+..+.++..++.+++..+.++...+..+..+..++.+++.+.+..+..+......+...+.++....
T Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1163)
T COG1196 849 EELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL 921 (1163)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445555555555555666666666666666666666666666666666666666555555443333
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.25 E-value=0.015 Score=70.90 Aligned_cols=125 Identities=20% Similarity=0.183 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHH---hhHHHHHHHHH
Q 001657 797 RIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQL---WEKDTEIKEIK 873 (1036)
Q Consensus 797 qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql---~E~~~k~~E~~ 873 (1036)
++..|.+.+..++..+..+.++|+++.+.+.|..|- -.+|..+.+-+.+|+--.+.+++.-.+| .+.+.++.|..
T Consensus 411 E~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGA--E~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn 488 (1243)
T KOG0971|consen 411 ELEELRRQKERLSRELDQAESTIADLKEQVDAALGA--EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESN 488 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH--HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666665555554432 2577777777777777666666533222 22333333333
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhccchHHHHH
Q 001657 874 EQL-NDLVALLKQSEAQRKELVKQQRMREQAV-------TIALASSASQGSSWRSSKH 923 (1036)
Q Consensus 874 ~~~-~el~~~~~~~~~e~~el~~~l~e~E~~~-------~~l~~~~~~~~~q~~~~k~ 923 (1036)
+++ -||.+++..+..-..++.++.+.+...+ -++---.+.|..|+.+++.
T Consensus 489 ~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 489 RELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 3444455555444555555555544433 2222223334555555554
No 55
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.20 E-value=0.031 Score=66.42 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 527 ~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
..++..|-+.|..|+.++..+-+|||.|.-++.++
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~ksl 435 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSL 435 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34667788999999999999999999999988876
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.18 E-value=0.088 Score=70.48 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=13.7
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
++-+-.+|-.|+|||+.|
T Consensus 17 DG~t~i~GTNG~GKTTlL 34 (1201)
T PF12128_consen 17 DGHTHICGTNGVGKTTLL 34 (1201)
T ss_pred CCceeeecCCCCcHHHHH
Confidence 344556788899999887
No 57
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.18 E-value=0.054 Score=67.85 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 842 GDAKNLLQYMFNVAAETRFQL------WEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIA 907 (1036)
Q Consensus 842 ~eak~~l~~l~~~~~~~~~ql------~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l 907 (1036)
..+-..+++.+.-......++ .+...++..++...........+.++|.+-|...|++.|.--...
T Consensus 517 ~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~k 588 (775)
T PF10174_consen 517 ERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDK 588 (775)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444444444333333 345566667777777777777777777777777776666544333
No 58
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.16 E-value=0.058 Score=67.59 Aligned_cols=274 Identities=18% Similarity=0.179 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001657 590 LKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1036)
Q Consensus 590 L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~ 669 (1036)
+..+......+.|+-++++..|..|+..+.....-+..+.+.|...-......+ ..+-+++-++.++..|+..+++
T Consensus 233 ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK----~k~d~~~~eL~rk~~E~~~~qt 308 (775)
T PF10174_consen 233 IEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMK----SKMDRLKLELSRKKSELEALQT 308 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666677776666666666666665555666666666665443333333 2367788888889988888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchHHHHHHHHHHHHHH-HhHHHHHHHHHH
Q 001657 670 LNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS-ANVHEVRFKYEK 748 (1036)
Q Consensus 670 ~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~ELE~l-~~l~E~~~~~~~ 748 (1036)
..+.-..+. .+....+.-|++.|.+..+-. .-|.-++|.+ .++++....++.
T Consensus 309 ~l~~~~~~~----~d~r~hi~~lkesl~~ke~~~-----------------------~~Lqsdve~Lr~rle~k~~~l~k 361 (775)
T PF10174_consen 309 RLETLEEQD----SDMRQHIEVLKESLRAKEQEA-----------------------EMLQSDVEALRFRLEEKNSQLEK 361 (775)
T ss_pred HHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 544333221 122234555555554321111 1156666666 556555555555
Q ss_pred HHHH-------HHHHHHHHHHHHHhhhhhcCCCCCCCCcCCccccccCChhHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 001657 749 QSQV-------QAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSE 821 (1036)
Q Consensus 749 q~e~-------r~k~~~El~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq~~~~~~~~~~~~l~~ql~~ 821 (1036)
.... ...+..|+..|+..++. ....|..|+..+..++..+.+-..+++.
T Consensus 362 k~~~~~~~qeE~~~~~~Ei~~l~d~~d~------------------------~e~ki~~Lq~kie~Lee~l~ekd~ql~~ 417 (775)
T PF10174_consen 362 KQAQIEKLQEEKSRLQGEIEDLRDMLDK------------------------KERKINVLQKKIENLEEQLREKDRQLDE 417 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 44444445444432211 1233445555555555555555556666
Q ss_pred HHHHHHhhhccccc-hhhccHHHHHHHHHHHHHHHHhHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 822 AEERERALVGRGRW-NHLRFMGDAKNLLQYMFNVAAETRFQ-LWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRM 899 (1036)
Q Consensus 822 ~e~r~~~~~~k~r~-~~i~s~~eak~~l~~l~~~~~~~~~q-l~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e 899 (1036)
...|..+......- ....++.+|-...++++..+...+.. -.+...+++-.+..+.++...+..++.++.+..-++..
T Consensus 418 ~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~ 497 (775)
T PF10174_consen 418 EKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLED 497 (775)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55555431111111 24477778888888887776665522 23556677777778888888888888888887777777
Q ss_pred HHHHHHHHHhhhhhhccch
Q 001657 900 REQAVTIALASSASQGSSW 918 (1036)
Q Consensus 900 ~E~~~~~l~~~~~~~~~q~ 918 (1036)
.-..++.|+.+--.-.+-+
T Consensus 498 ~kee~s~l~s~~~K~~s~i 516 (775)
T PF10174_consen 498 AKEEASKLASSQEKKDSEI 516 (775)
T ss_pred hhhHHHHHhhccchhhhHH
Confidence 7777777766554433333
No 59
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=0.053 Score=67.07 Aligned_cols=178 Identities=21% Similarity=0.287 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHH
Q 001657 500 MDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLK 579 (1036)
Q Consensus 500 l~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~ 579 (1036)
.+.|+.+.+.+|+.++....... ... .+|-..+..-++++..+..+..+|...+..+
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~~-e~s----~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l------------------ 284 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSAP-EES----EQYIDALDKVEDESEDLKCEIKELENKLTNL------------------ 284 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhccc-hhh----hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------------
Confidence 46788888888888887764333 111 2223334444555555544444443333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001657 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRK 659 (1036)
Q Consensus 580 l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK 659 (1036)
. .+.+.-.....++.|.|-+++-++++|+++|..-+.++..... .+..++.+...
T Consensus 285 ----~---~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~------------------~l~~~~~ki~e 339 (1200)
T KOG0964|consen 285 ----R---EEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALH------------------VLQKVKDKIEE 339 (1200)
T ss_pred ----H---HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHH------------------HHHHHHHHHHH
Confidence 1 1112223345677888999999999999999988888876322 22234444555
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchHHHHHHHHHHHHHH
Q 001657 660 NEFERHKLEALNQRQKM---VLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS 736 (1036)
Q Consensus 660 ~e~Ei~~L~~~~~~q~~---vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~ELE~l 736 (1036)
++.|+.+..-.+..... +++..+..+ ..+.++.+..+ . ..+...+.+....|+..|++.+
T Consensus 340 ~~~EL~~I~Pky~~l~~ee~~~~~rl~~l---~~~~~~l~~Kq----------g----r~sqFssk~eRDkwir~ei~~l 402 (1200)
T KOG0964|consen 340 KKDELSKIEPKYNSLVDEEKRLKKRLAKL---EQKQRDLLAKQ----------G----RYSQFSSKEERDKWIRSEIEKL 402 (1200)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHHHH---HHHHHHHHHhh----------c----cccccCcHHHHHHHHHHHHHHH
Confidence 55555555544433332 222222222 22333333321 1 1223455677899999999998
Q ss_pred -HhHHHH
Q 001657 737 -ANVHEV 742 (1036)
Q Consensus 737 -~~l~E~ 742 (1036)
..+.+.
T Consensus 403 ~~~i~~~ 409 (1200)
T KOG0964|consen 403 KRGINDT 409 (1200)
T ss_pred HHHHhhh
Confidence 444443
No 60
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.14 E-value=0.036 Score=68.66 Aligned_cols=286 Identities=20% Similarity=0.210 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 576 HTLKLKALEAQILELKK-KQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK 654 (1036)
Q Consensus 576 ~~~~l~~LE~el~~L~~-e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk 654 (1036)
|..++.+|+.--..|.. ++---.+|.+.+.+.|. ..|+.+|-.+|++..+ |+.+..--|..-+.+.-|+.+|.
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~lrarse~--~tleseiiqlkqkl~d----m~~erdtdr~kteeL~eEnstLq 335 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG--ATLESEIIQLKQKLDD----MRSERDTDRHKTEELHEENSTLQ 335 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHH
Confidence 56666666644334432 22223455555555544 5666666666666555 33333333333334444444444
Q ss_pred HHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCC-CCCCCchHHHHHHHH
Q 001657 655 KEGRKNEFERHKLEA---LNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTT-PTGQSNEKSLQKWLE 730 (1036)
Q Consensus 655 ~~~rK~e~Ei~~L~~---~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~-~~~~~~~~~~~~Wl~ 730 (1036)
-+-+.-...|.-++. ..+....-+++..+++.+ .+-+|-+|+.++-...=-+.+.+++.+ -+....-+...+-|.
T Consensus 336 ~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs 414 (1195)
T KOG4643|consen 336 VQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLS 414 (1195)
T ss_pred HHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHh
Confidence 433333332333333 111222236666666655 233333344332221111111111000 000001122334588
Q ss_pred HHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCCccccccCChhHHHHHHHHHHHHHHhcH
Q 001657 731 HELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSS 809 (1036)
Q Consensus 731 ~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq~~~~~~~ 809 (1036)
-+.|+| .++.+.....+.+..+-+.+-.|..+|......- ++ ++. + +...+-.-
T Consensus 415 ~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~-------------~~--s~~------r----q~~e~e~~ 469 (1195)
T KOG4643|consen 415 KKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV-------------TR--SLS------R----QSLENEEL 469 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH--hHH------H----HHHHhHHH
Confidence 888888 6777777777777777777888877776522110 00 000 0 01111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 810 KALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQ 889 (1036)
Q Consensus 810 ~~~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e 889 (1036)
+++..+..|+...-+..++.. -+.-.++.++.-.+..+...+..-.-|+......+.....++.+|...+.-++.|
T Consensus 470 ~q~ls~~~Q~~~et~el~~~i----knlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~E 545 (1195)
T KOG4643|consen 470 DQLLSLQDQLEAETEELLNQI----KNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEE 545 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 222222222222211111100 0122334444444555544444444466666666666666666666666666666
Q ss_pred HHHHHHHH
Q 001657 890 RKELVKQQ 897 (1036)
Q Consensus 890 ~~el~~~l 897 (1036)
+..|..+.
T Consensus 546 Na~LlkqI 553 (1195)
T KOG4643|consen 546 NAHLLKQI 553 (1195)
T ss_pred HHHHHHHH
Confidence 66655443
No 61
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.11 E-value=0.05 Score=64.88 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 001657 678 LQRKTEEAAIATKRLKELLEARKSSARENS 707 (1036)
Q Consensus 678 LqRK~eE~~a~~krLke~Le~ek~~r~k~e 707 (1036)
.+++++++.+...++.+-|..+++.+.+..
T Consensus 369 ~k~~ie~L~~el~~~e~~lqEer~E~qkL~ 398 (546)
T PF07888_consen 369 DKDEIEKLSRELQMLEEHLQEERMERQKLE 398 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655555554443
No 62
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.08 E-value=0.068 Score=65.41 Aligned_cols=50 Identities=32% Similarity=0.326 Sum_probs=37.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 001657 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSAREN 706 (1036)
Q Consensus 653 Lk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~ 706 (1036)
|-+++.++..|+..|. +++-.|+|+++++.+.+..|+|..++-=.+-..+
T Consensus 401 ~~kelE~k~sE~~eL~----r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV 450 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELR----RQKERLSRELDQAESTIADLKEQVDAALGAEEMV 450 (1243)
T ss_pred HHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Confidence 6666667777766664 4566799999999999999999988754443333
No 63
>PRK01156 chromosome segregation protein; Provisional
Probab=98.04 E-value=0.13 Score=67.12 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.5
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5567899999999875
No 64
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.11 Score=65.84 Aligned_cols=94 Identities=24% Similarity=0.262 Sum_probs=44.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001657 601 LKQKHKSDEAAKRLQAEIQSIKAQKVQ---LQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMV 677 (1036)
Q Consensus 601 ~K~K~K~E~~~~~L~~ei~~lk~~kv~---L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~v 677 (1036)
.+.....-.++..|+..|..+.....+ .+..+++++.....-..+.++++..++++.+-....++.+......-++.
T Consensus 513 ~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~ 592 (1293)
T KOG0996|consen 513 LSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSS 592 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555554433332 25556666666666666666666666666554444333333322222222
Q ss_pred --HHHHHHHHHHHHHHHHH
Q 001657 678 --LQRKTEEAAIATKRLKE 694 (1036)
Q Consensus 678 --LqRK~eE~~a~~krLke 694 (1036)
-.+.--++..++.|+|+
T Consensus 593 ~~~~~s~~kVl~al~r~ke 611 (1293)
T KOG0996|consen 593 LSSSRSRNKVLDALMRLKE 611 (1293)
T ss_pred HHhhhhhhHHHHHHHHHHH
Confidence 22333334444555555
No 65
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.02 E-value=1.1e-07 Score=115.42 Aligned_cols=257 Identities=23% Similarity=0.276 Sum_probs=153.6
Q ss_pred CCCCCCCceEEEEEeCCCCcchhc---------cCCceEEEEeCCC-ceeeecceeEEcceeeCCCCCCccccccccchh
Q 001657 2 DTASENCSVKVAVHVRPLIGDERA---------QGCKECVAVTHGN-PQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (1036)
Q Consensus 2 ~~~~~~~~v~V~vRvRP~~~~e~~---------~~~~~~v~v~~~~-~~v~~~~~~F~FD~Vf~~~~t~q~~vy~~~v~p 71 (1036)
++-++.+.++|+|+|+|....... ........+..+. ..+......|.||.+|..... ...++.. ...
T Consensus 299 ~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~-~~~ 376 (568)
T COG5059 299 DSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEI-EILVFRE-QSQ 376 (568)
T ss_pred HhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhh-hhHHHHH-HHh
Confidence 345677899999999999844210 0011000111111 222233468999999977543 4444433 556
Q ss_pred hHHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcc-cceEEEEeehhhhhhhhhhhccC
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLD 150 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~ 150 (1036)
+++.-++| +++||++++|+++|| .....++.+-++...|..+..... .+.+...+-|+++|-....++..
T Consensus 377 ~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (568)
T COG5059 377 LSQSSLSG----IFAYMQSLKKETETL-----KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLRE 447 (568)
T ss_pred hhhhhhhh----HHHHHhhhhhhhhcc-----cchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777 999999999999999 444567777777888887766432 24455556666776333333332
Q ss_pred CcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCceeEE
Q 001657 151 SVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (1036)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~If 230 (1036)
...... ...-.. .-.++.+. +..++ .......+. .....+...+....+..|..++++|.+|
T Consensus 448 e~~~~~-~~~~~~----------~~~~~~~~-----~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 509 (568)
T COG5059 448 EELSKK-KTKIHK----------LNKLRHDL-----SSLLS-SIPEETSDR-VESEKASKLRSSASTKLNLRSSRSHSKF 509 (568)
T ss_pred HhcCCh-HHHHHH----------HHHHHHHH-----HHhhh-hcchhhhhh-hhhhhhccchhhcccchhhhhcccchhh
Confidence 211000 000000 00000000 00000 000111111 1112567788889999999999999999
Q ss_pred EEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhh
Q 001657 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305 (1036)
Q Consensus 231 ti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~~VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~ 305 (1036)
+......... ....+ ++.|||||+||. .....|.++++..++|++|..+|.+|.++.
T Consensus 510 ~~~~~~~~~~---------------~~~~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 510 RDHLNGSNSS---------------TKELS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhcccchhhh---------------hHHHH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 8765431110 00111 799999999999 899999999999999999999999998764
No 66
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.00 E-value=0.084 Score=63.73 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 595 ESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1036)
Q Consensus 595 ~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~ 656 (1036)
-+...|.+.+...|.-++.++.++..+|+.+..-.....+-.+-.....+.+.++++.++..
T Consensus 277 ~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~ 338 (1265)
T KOG0976|consen 277 AKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCA 338 (1265)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888899999999999999888766666655555555666666666666543
No 67
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.00 E-value=0.074 Score=63.39 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=70.9
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHhhhc-----cccchhhccHHHHHHHHHHHHHHHHh-HHHHHhhHHHHHHHHHHH
Q 001657 802 ENMLNMSSKALVEMASQLSEAEERERALVG-----RGRWNHLRFMGDAKNLLQYMFNVAAE-TRFQLWEKDTEIKEIKEQ 875 (1036)
Q Consensus 802 q~~~~~~~~~~~~l~~ql~~~e~r~~~~~~-----k~r~~~i~s~~eak~~l~~l~~~~~~-~~~ql~E~~~k~~E~~~~ 875 (1036)
++....+...+.....+|..++...++..+ +.+.+.-.+..+-|..|.-|...--. +.|...+- --..-++..
T Consensus 302 ~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~~-~~~~~lesl 380 (629)
T KOG0963|consen 302 ERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDED-ETAKTLESL 380 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCcccccccc-cccchHHHH
Confidence 333333444444444555555433332221 23334445566666666555443211 22222110 001112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHh----hhc---------------CCCCCcc
Q 001657 876 LNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFAD----DMS---------------GPLSPVS 936 (1036)
Q Consensus 876 ~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~----e~~---------------~~~~~~~ 936 (1036)
|-+.-+++++|+..|-.........+..+.+...-+.++..+.|+... ++. .+.++-+
T Consensus 381 ---Ll~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~~~~~~~~~~~~~~~ 457 (629)
T KOG0963|consen 381 ---LLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPAEGATARREEGSGQP 457 (629)
T ss_pred ---HHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCCCcchhhhcccCCcC
Confidence 223335666666666655555555555555555555544444444322 111 1234455
Q ss_pred ccCccccccccCcccCcccch
Q 001657 937 LPAPKQLKFTPGIVNGSVRES 957 (1036)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ 957 (1036)
+|.+...+++|-..++.+-.+
T Consensus 458 v~e~s~~~~~p~~~~~~~~s~ 478 (629)
T KOG0963|consen 458 VPESSIMGGGPSLPNGGVLSR 478 (629)
T ss_pred CCcccccCCCCCccccccccc
Confidence 667777777777777766554
No 68
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=0.039 Score=69.53 Aligned_cols=78 Identities=21% Similarity=0.167 Sum_probs=53.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001657 836 NHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (1036)
Q Consensus 836 ~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~ 913 (1036)
..+.-+.+++..|..+...+..-...+..+...+..++..+.+..+.+.++..+..++..++-..-+.+.-+...-++
T Consensus 518 ~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~ 595 (1293)
T KOG0996|consen 518 TGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSS 595 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666766666666666667777777777777777777777777777777777777777766555544433
No 69
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.94 E-value=0.14 Score=65.02 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.0
Q ss_pred HhhcCCCccEeeeccCCCCccccc
Q 001657 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 75 ~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
-+-.|+=+-|+..--.+|||-|.|
T Consensus 82 vIGrGaFGEV~lVr~k~t~~VYAM 105 (1317)
T KOG0612|consen 82 VIGRGAFGEVALVRHKSTEKVYAM 105 (1317)
T ss_pred HhcccccceeEEEEeeccccchhH
Confidence 344688888888888999999999
No 70
>PRK01156 chromosome segregation protein; Provisional
Probab=97.92 E-value=0.2 Score=65.26 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001657 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA 623 (1036)
Q Consensus 580 l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~ 623 (1036)
+..+...+.++......-..+.+....++..+..+..++..++.
T Consensus 348 ~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~ 391 (895)
T PRK01156 348 YDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSA 391 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33444444444444444445555555555555555554444433
No 71
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.031 Score=68.97 Aligned_cols=298 Identities=11% Similarity=0.133 Sum_probs=161.0
Q ss_pred HHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001657 597 QVELLKQKHKSD-----EAAKRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1036)
Q Consensus 597 ~~~L~K~K~K~E-----~~~~~L~~ei~~lk~~kv~L---~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~ 668 (1036)
-++|.|.++.+| ..+++...++.++...+... -.++.+...+..+.......++-.|+..++-.-.|..+++
T Consensus 213 Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~ 292 (1200)
T KOG0964|consen 213 YQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLK 292 (1200)
T ss_pred HHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445556665553 45566666666666666654 3455555555555555555556556655555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchHHHHHHHHHHHHHH-HhHHHHHHHHH
Q 001657 669 ALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS-ANVHEVRFKYE 747 (1036)
Q Consensus 669 ~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~ELE~l-~~l~E~~~~~~ 747 (1036)
+. +..+++.||. +.-.++.|.+.++..+..|..+...... +..+++.. ..|....-.+.
T Consensus 293 a~---~t~~~k~kt~-lel~~kdlq~~i~~n~q~r~~~l~~l~~----------------~~~ki~e~~~EL~~I~Pky~ 352 (1200)
T KOG0964|consen 293 AR---ETKISKKKTK-LELKIKDLQDQITGNEQQRNLALHVLQK----------------VKDKIEEKKDELSKIEPKYN 352 (1200)
T ss_pred HH---HHHHHHHhhh-hhhhhHHHHHHhhhhhhhhhhHHHHHHH----------------HHHHHHHHHHHHHHhhhHHH
Confidence 32 2223444432 3345677777777665555444333322 55555555 67888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc-CCCCCCCCcCCccccccCChhHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001657 748 KQSQVQAALADELTILKQVDQLSL-NGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERE 826 (1036)
Q Consensus 748 ~q~e~r~k~~~El~~Lk~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~ 826 (1036)
.+.+.-+.+...++.|++....-- +-...+....+ ..-+.-+..+|..|...+.....+...++.++.+++...
T Consensus 353 ~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk-----~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l 427 (1200)
T KOG0964|consen 353 SLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSK-----EERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESEL 427 (1200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 888888888888888876322111 10111111110 111233455667777777777667777777777775322
Q ss_pred HhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 827 RALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTI 906 (1036)
Q Consensus 827 ~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~ 906 (1036)
++.. ...-....|+.+.++.+..+-. ...++..+.+|+...+.+|-..=.+++...+.+...++..+..+..
T Consensus 428 ~~~~-e~i~~l~~si~e~~~r~~~~~~-------~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 428 KEKL-EEIKELESSINETKGRMEEFDA-------ENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHH-HHHHHHHhhHhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1111233444444444433322 3445555666666666666655566666666666666666655543
Q ss_pred HHhhhhhhccchHHHHHHHhhhc
Q 001657 907 ALASSASQGSSWRSSKHFADDMS 929 (1036)
Q Consensus 907 l~~~~~~~~~q~~~~k~~~~e~~ 929 (1036)
...... ..=+...+.-.++..
T Consensus 500 ~~~r~v--~nGi~~v~~I~e~~k 520 (1200)
T KOG0964|consen 500 TMNRSV--ANGIDSVRKIKEELK 520 (1200)
T ss_pred hccchh--hhhhHHHHHHHHHhc
Confidence 332221 223566666666666
No 72
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.89 E-value=0.039 Score=65.79 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=41.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 495 LWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 495 ~~q~kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
.+-+.|+.+-..|..+|..++... + .+....+.-|+..+..+..-+....++|-++..++..+
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~~---~-~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl 118 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGVV---G-RETSGIKAKYEAELATARKLLDETARERAKLEIEITKL 118 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---c-CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667778888888887776544 1 34455666677777777777777766666666655544
No 73
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.87 E-value=0.082 Score=60.07 Aligned_cols=124 Identities=19% Similarity=0.308 Sum_probs=71.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q 001657 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG 575 (1036)
Q Consensus 496 ~q~kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~ 575 (1036)
+-..|+.+...|..+|....... . ......+..|+..|..|...+..+..|+..+..++.++....++-..|+.++
T Consensus 19 kVr~LE~~N~~Le~~i~~~~~~~---~-~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 19 KVRFLEQENKRLESEIEELREKK---G-EEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhcc---c-ccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 34455666666666666554432 1 2344577889999999999999999999999888887643333222333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001657 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (1036)
Q Consensus 576 ~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~ 627 (1036)
......++.++..|++..+ .....+..++.++..|+++|.-++..+.+
T Consensus 95 -~~~~~~le~el~~lrk~ld---~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 95 -LAERKDLEEELESLRKDLD---EETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhhhhhhh---hhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 2344455555555553332 33445555666666666666666665555
No 74
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.18 Score=59.72 Aligned_cols=125 Identities=16% Similarity=0.105 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhcccccCC
Q 001657 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKEL-LEARKSSARENSVNSTG 712 (1036)
Q Consensus 634 ~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~-Le~ek~~r~k~e~~~~~ 712 (1036)
+|.++...-...+.+++..+..+..+-..++-.+....+...--++.+.-+....+.+|+-. .+..+. -.+..
T Consensus 332 ~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n------~~~~p 405 (581)
T KOG0995|consen 332 EDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN------LERNP 405 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCcCC
Confidence 34444444445555566666666666666666666666666667777777777777777654 222111 01111
Q ss_pred CCCCCCCC-chHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 713 YTTPTGQS-NEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILK 764 (1036)
Q Consensus 713 ~~~~~~~~-~~~~~~~Wl~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk 764 (1036)
..+++... -...+.--+...+..+ .+++++......+++....++.-.+.++
T Consensus 406 e~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~ 459 (581)
T KOG0995|consen 406 ERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKI 459 (581)
T ss_pred ccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 1223344444444445 4556666666666555555555444444
No 75
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.73 E-value=0.23 Score=60.12 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 616 AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLK 652 (1036)
Q Consensus 616 ~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~q 652 (1036)
.-+.+.+.++..|+|-+.+++...++......-.+.|
T Consensus 280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseq 316 (1265)
T KOG0976|consen 280 SVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQ 316 (1265)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 3344444455555555555555555544444433333
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.72 E-value=0.22 Score=59.57 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 001657 639 FRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSV 708 (1036)
Q Consensus 639 ~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~ 708 (1036)
.+.-..+..+|...++.+....+-++++|+...++++-.+....++.-..++-.+-.++.+++.+...++
T Consensus 723 e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~~ll~ve~~~k~~e~~~~~~~~ler 792 (961)
T KOG4673|consen 723 ERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQEVLLHVELIQKDLEREKASRLDLER 792 (961)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhCHHHHhhccc
Confidence 3344445556666666666666667777777777777777666777777777788888888888777665
No 77
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.68 E-value=0.31 Score=60.09 Aligned_cols=247 Identities=17% Similarity=0.214 Sum_probs=140.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhH
Q 001657 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (1036)
Q Consensus 497 q~kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~ 576 (1036)
+......+.+|...|..+...+.......... .....-..|+.++..|.+|++.|..++.....+ ...+..+..+.
T Consensus 45 k~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa---~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~-ne~Ls~L~~Eq 120 (617)
T PF15070_consen 45 KEHDISRVQELERSLSELKNQMAEPPPPEPPA---GPSEVEQQLQAEAEHLRKELESLEEQLQAQVEN-NEQLSRLNQEQ 120 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCccccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444557777777776665554332111110 001112456666777777777777666543221 34667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 577 TLKLKALEAQILELKKKQESQV--------------ELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQW 642 (1036)
Q Consensus 577 ~~~l~~LE~el~~L~~e~~~~~--------------~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~ 642 (1036)
+.+|.+||..+.+++.....+. +.+.....+..++.+|++-+..|-..+.+|.-++..|...-++-
T Consensus 121 EerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL 200 (617)
T PF15070_consen 121 EERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKEL 200 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 8899999988888876655444 34456777888888888888888888877766666555444332
Q ss_pred ---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh--hhhhcccccCCCC
Q 001657 643 ---KASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKT---EEAAIATKRLKELLEARKS--SARENSVNSTGYT 714 (1036)
Q Consensus 643 ---~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~---eE~~a~~krLke~Le~ek~--~r~k~e~~~~~~~ 714 (1036)
--.++-++..++..+.-+..|+..|+.....-..-|+.=. .-+++....|.-.+--+.. .+...+.
T Consensus 201 ~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE------ 274 (617)
T PF15070_consen 201 QKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEE------ 274 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 2245555667777888888888888775544333344322 2222222222211111100 0111100
Q ss_pred CCCCCCchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 715 TPTGQSNEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1036)
Q Consensus 715 ~~~~~~~~~~~~~Wl~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk~ 765 (1036)
.|-.-.+|.. ..|-++...+++....+..+.+.|..+.-
T Consensus 275 ------------~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 275 ------------SQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred ------------hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 1112223334 56667777788888888888888876654
No 78
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.34 Score=60.54 Aligned_cols=128 Identities=23% Similarity=0.308 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001657 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (1036)
Q Consensus 535 ~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L 614 (1036)
+++.+.+.+++..++|.+.+..+|+.++.. ..+-..|+.++.-++.+|-. ..=+.++.++.++...-..+...+.++
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~-~~kf~~l~~ql~l~~~~l~l--~~~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEAQ-SQKFRDLKQQLELKLHELAL--LEKRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHhcChHhhHHHHHHHHHHHHHHH
Confidence 567888889999999999999999888533 22444555555555544432 222344555666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 001657 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERH 665 (1036)
Q Consensus 615 ~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~ 665 (1036)
+.+|.......-+..-++..=-+...+|...+++++..|.+++......+.
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e 804 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAE 804 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 777766555444444444333345567777788888777766555444433
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.61 E-value=0.023 Score=70.71 Aligned_cols=98 Identities=21% Similarity=0.338 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHH
Q 001657 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQK---MVLQRKT 682 (1036)
Q Consensus 606 K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~---~vLqRK~ 682 (1036)
++|..++.|+.||+.++..=.+|..++- ..........-++.+|+.+..-.+..++.|...-+..+ ..|-||+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis----~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQIS----SLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHh----hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665555433321 11111112223344444444444444444444222221 2377888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcc
Q 001657 683 EEAAIATKRLKELLEARKSSARENS 707 (1036)
Q Consensus 683 eE~~a~~krLke~Le~ek~~r~k~e 707 (1036)
.|-..+...|+..|..+|.++.+.+
T Consensus 498 ~eE~~~R~~lEkQL~eErk~r~~ee 522 (697)
T PF09726_consen 498 AEERRQRASLEKQLQEERKARKEEE 522 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8888788888888888877776554
No 80
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.55 E-value=0.82 Score=61.85 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.2
Q ss_pred ccEeeeccCCCCccccc
Q 001657 82 ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm 98 (1036)
+++.-+|++|||||.+|
T Consensus 28 ~~~~l~G~NGaGKSTll 44 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTM 44 (1486)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35566799999999998
No 81
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.48 E-value=0.51 Score=57.54 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=19.6
Q ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 729 LEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1036)
Q Consensus 729 l~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk~ 765 (1036)
+..||+.. ..|..+......+...-..+..||.+.+.
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~ 323 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKE 323 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 45555555555555555555555555444
No 82
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.45 E-value=0.19 Score=55.85 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1036)
Q Consensus 644 ~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~e 699 (1036)
......|..|+.+..+-...+...+..+.......-.+-+++...|.+|+..|..+
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E 280 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQRE 280 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666665555566677777778887665543
No 83
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.41 E-value=0.049 Score=67.88 Aligned_cols=110 Identities=23% Similarity=0.208 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Q 001657 637 EQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTP 716 (1036)
Q Consensus 637 ~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~ 716 (1036)
+..+.-+.++|.|+.+|+.+++.++.++..|+...+.-.. . .+|....++.|-.+|.+-+.-....|..
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~-~---~~e~~~~~e~L~~aL~amqdk~~~LE~s------- 609 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK-Y---EKESEKDTEVLMSALSAMQDKNQHLENS------- 609 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HhhhhhhHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3456677888888888888888888888888775521111 0 0222222222222222211111111211
Q ss_pred CCCCchHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001657 717 TGQSNEKSLQKWLEHE----LEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQL 769 (1036)
Q Consensus 717 ~~~~~~~~~~~Wl~~E----LE~l~~l~E~~~~~~~q~e~r~k~~~El~~Lk~~~e~ 769 (1036)
|..| |+....|.|+++.++-......+.+.|+..||..+.+
T Consensus 610 ------------LsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 610 ------------LSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 2333578888888888888899999999999986543
No 84
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.38 E-value=1.3 Score=60.02 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHH
Q 001657 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALR-HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (1036)
Q Consensus 499 kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k-~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~ 577 (1036)
.+...+.+|+.++..++...+...+......+ ..+..++..+...+..++.........+.... .-..+.+
T Consensus 311 rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeele--------eeleele 382 (1486)
T PRK04863 311 EMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEAD--------EQQEENE 382 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 44555566666666665555433211110000 11233344444444444444444444443321 1112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 001657 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL------QNKIKQEAEQFRQWKASREKELL 651 (1036)
Q Consensus 578 ~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L------~rkmk~e~~~~~~~~~~~ekei~ 651 (1036)
..+..++.++..|+.+ ...+.......+.++..++..+..+...+.-+ ..-++.....|......++.++.
T Consensus 383 eEleelEeeLeeLqeq---Laelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~ 459 (1486)
T PRK04863 383 ARAEAAEEEVDELKSQ---LADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELL 459 (1486)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555444444432 33445555566666666666666666666554 35555666666666666665555
Q ss_pred HHHHHhhhhHHHHHHHH
Q 001657 652 KLKKEGRKNEFERHKLE 668 (1036)
Q Consensus 652 qLk~~~rK~e~Ei~~L~ 668 (1036)
.|+.++...+..+..+.
T Consensus 460 elE~kL~~lea~leql~ 476 (1486)
T PRK04863 460 SLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555554443333
No 85
>PRK11637 AmiB activator; Provisional
Probab=97.34 E-value=0.13 Score=61.28 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=18.0
Q ss_pred chhhccCCCCcceeeecccccceeeee-ecccCcchhhhhhh
Q 001657 976 KKLATVGQPGKLWRWKRSHHQWLLQFK-WKWQKPWKLSEWIK 1016 (1036)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1016 (1036)
-.|+.+|.+|- ....| |+|. |+.-+|-....|++
T Consensus 393 ~~ig~~g~~g~----~~~~~---l~fei~~~~~~vnP~~~l~ 427 (428)
T PRK11637 393 QPIALVGSSGG----QGRPS---LYFEIRRQGQAVNPQPWLG 427 (428)
T ss_pred CeEEeecCCCC----CCCCe---EEEEEEECCEEeChHHHhC
Confidence 34667777772 22122 4444 34445666667764
No 86
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.33 E-value=0.14 Score=55.84 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001657 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (1036)
Q Consensus 533 ~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~ 612 (1036)
.+.++..++..+..|+.+.+.+...+..++.. .+....-...|+.++..|. ..|+.-........+.-.+++..+.
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~-~~~~~~re~~~e~~i~~L~---~~lkeaE~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVGNNLKSLEAS-EEKASEREDEYEEKIRDLE---EKLKEAENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777666422 2233333466777777777 4444445556666777788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001657 613 RLQAEIQSIKAQKVQLQNKI 632 (1036)
Q Consensus 613 ~L~~ei~~lk~~kv~L~rkm 632 (1036)
.|+++|...|.....+.+-|
T Consensus 208 ~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 208 RLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99888888887777754444
No 87
>PRK11637 AmiB activator; Provisional
Probab=97.26 E-value=0.31 Score=58.00 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001657 635 EAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQ 674 (1036)
Q Consensus 635 e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q 674 (1036)
+.......+..+...+.+|+.+....+.++..|+....+.
T Consensus 206 ~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 206 QQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555556555555555555555443333
No 88
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.25 E-value=0.81 Score=54.91 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 608 DEAAKRLQAEIQSIKAQKVQLQN--KIK--QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTE 683 (1036)
Q Consensus 608 E~~~~~L~~ei~~lk~~kv~L~r--kmk--~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~e 683 (1036)
...|..|+.+++.++.+...--. +.. .+........-.++++|++|-....+-+.-...+...+..|.+-|-++.+
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~ 327 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELK 327 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566555555444311 111 22222222333377777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchHHHHHHHHHHHHHHHhH--H---HHH------HHHHH-HHH
Q 001657 684 EAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANV--H---EVR------FKYEK-QSQ 751 (1036)
Q Consensus 684 E~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~ELE~l~~l--~---E~~------~~~~~-q~e 751 (1036)
.....+++|++.|..+ +|+ .=+-.||-+|..+ . ++. ..++. +++
T Consensus 328 ~~~~~leel~~kL~~~-----------sDY-------------eeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~ 383 (629)
T KOG0963|consen 328 AKISELEELKEKLNSR-----------SDY-------------EEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLE 383 (629)
T ss_pred HHHHHHHHHHHHHhhh-----------ccH-------------HHHHHHHHHHHHhhcCCcccccccccccchHHHHHHH
Confidence 7777777777777754 221 1166777777322 1 111 22333 556
Q ss_pred HHHHHHHHHHHHHH
Q 001657 752 VQAALADELTILKQ 765 (1036)
Q Consensus 752 ~r~k~~~El~~Lk~ 765 (1036)
-++++..|++.||-
T Consensus 384 knr~lq~e~a~Lr~ 397 (629)
T KOG0963|consen 384 KNRKLQNENASLRV 397 (629)
T ss_pred HHhhhhHHHHHHhc
Confidence 68899999999986
No 89
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.23 E-value=1.2 Score=56.48 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 352 ESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEY 431 (1036)
Q Consensus 352 eTl~TL~fa~rar~Ik~kpvvn~d~~~~ei~~Lr~ei~~Lq~eL~~~~~~~~~~e~~~L~eki~~L~~e~~~L~~eL~~~ 431 (1036)
-+..|=+|-.+|+.|+.-+++. ...+.+..|++.+...+.-|... ..+..++ ++|......|.++|++.
T Consensus 1176 L~~rt~rl~~~A~~l~~tGv~g--ay~s~f~~me~kl~~ir~il~~~--svs~~~i-------~~l~~~~~~lr~~l~~~ 1244 (1758)
T KOG0994|consen 1176 LALRTHRLINRAKELKQTGVLG--AYASRFLDMEEKLEEIRAILSAP--SVSAEDI-------AQLASATESLRRQLQAL 1244 (1758)
T ss_pred HHHHHHHHHHHHHHhhhccCch--hhHhHHHHHHHHHHHHHHHhcCC--CccHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3566778999999999998866 56777888888888877777433 3333333 34444555666677777
Q ss_pred HHhHHHHHhcccc
Q 001657 432 RSRRAVVEHCGTD 444 (1036)
Q Consensus 432 ~~~la~~Ee~~~~ 444 (1036)
++++...|....+
T Consensus 1245 ~e~L~~~E~~Lsd 1257 (1758)
T KOG0994|consen 1245 TEDLPQEEETLSD 1257 (1758)
T ss_pred Hhhhhhhhhhhhh
Confidence 7777666665544
No 90
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.16 E-value=0.002 Score=81.48 Aligned_cols=125 Identities=16% Similarity=0.091 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHh-------hhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHH
Q 001657 795 MERIASLENMLNMSSKALVEMASQLSEAEERERA-------LVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDT 867 (1036)
Q Consensus 795 ~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~~~-------~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~ 867 (1036)
.+++..|+..+..++.++..|..++..++.+... ...+.|.=++++-+-+...--+ .. .+.-++.
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k-~~-------~l~~L~~ 573 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIK-KS-------TLEALQA 573 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHH-HH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHH-HH-------HHHHHHH
Confidence 5566667777777777777788888777655543 2335577777777766655322 11 2223333
Q ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcC
Q 001657 868 EIKEIKEQLNDLV------------ALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSG 930 (1036)
Q Consensus 868 k~~E~~~~~~el~------------~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~ 930 (1036)
++.++...+..|. ..+...+.+..+|..++..++ -...|-+.-|+....+-+...-.+-|
T Consensus 574 En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~e---kr~~RLkevf~~ks~eFr~av~~llG 645 (722)
T PF05557_consen 574 ENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAE---KRNQRLKEVFKAKSQEFREAVYSLLG 645 (722)
T ss_dssp HHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333332211 111223334444554444444 34445555566667777766666655
No 91
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.12 E-value=0.35 Score=59.52 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=23.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 857 ETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQ 902 (1036)
Q Consensus 857 ~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~ 902 (1036)
..+..+..++....+....+.++...+..+..+..++.+....++.
T Consensus 362 ~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~ 407 (562)
T PHA02562 362 KVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGI 407 (562)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555555555555554433
No 92
>PRK11281 hypothetical protein; Provisional
Probab=97.10 E-value=1.5 Score=57.62 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001657 644 ASREKELLKLKKEGRKNEFER---HKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSS 702 (1036)
Q Consensus 644 ~~~ekei~qLk~~~rK~e~Ei---~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~ 702 (1036)
..++-|...|+-+..-.+.++ ..++...+.|...+..++...+..+..|++.+-.+|..
T Consensus 195 ~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~ 256 (1113)
T PRK11281 195 VLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLT 256 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444442 34555777777788888888888888888888764433
No 93
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=1.4 Score=53.85 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 649 ELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRL 692 (1036)
Q Consensus 649 ei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krL 692 (1036)
+|..+.++-...-.||..|++....+++.|++=+-|-+-.+.+|
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444444444555555555555555555555555544444333
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.02 E-value=0.51 Score=54.79 Aligned_cols=32 Identities=28% Similarity=0.170 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 666 KLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1036)
Q Consensus 666 ~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le 697 (1036)
++.+..+.+..--+++.+|+.+--.+|+..+.
T Consensus 210 k~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 210 KTLAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333344444445555555555555555544
No 95
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.85 E-value=2.1 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001657 540 LEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 540 Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
++.++..++......+..+.++
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l 275 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL 275 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444443
No 96
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.77 E-value=2.4 Score=52.38 Aligned_cols=60 Identities=25% Similarity=0.220 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 001657 645 SREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNS 710 (1036)
Q Consensus 645 ~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~ 710 (1036)
..+.++.+|+++.......|..+.-+. ..-+++++...|..|-+.++.+..++..+++..
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~------~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDE------AEEKNEEIQERIDQLYDILEREVKARKYVEKNS 312 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777766666666665433 344566777778888888999988888877644
No 97
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.73 E-value=0.00037 Score=88.02 Aligned_cols=99 Identities=12% Similarity=0.030 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccch
Q 001657 839 RFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSW 918 (1036)
Q Consensus 839 ~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~ 918 (1036)
.+..+....+..+........-++..+...+.+++..+.+|...+.++..+..++...+......+..|-|...-+....
T Consensus 336 ~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~ 415 (722)
T PF05557_consen 336 DSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKER 415 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333346777778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhhcCCCCCccc
Q 001657 919 RSSKHFADDMSGPLSPVSL 937 (1036)
Q Consensus 919 ~~~k~~~~e~~~~~~~~~~ 937 (1036)
+-++.+|+....-..++..
T Consensus 416 d~LR~~L~syd~e~~~~~~ 434 (722)
T PF05557_consen 416 DYLRAQLKSYDKEETTMNP 434 (722)
T ss_dssp -------------------
T ss_pred HHHHHHHHHhhhhhccccC
Confidence 8888888887775555443
No 98
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=2.5 Score=51.48 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 639 FRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1036)
Q Consensus 639 ~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le 697 (1036)
+.......+.++.-.+...+.....+..++..+.++...++.+...+++...+|.+.-+
T Consensus 163 ~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~ 221 (716)
T KOG4593|consen 163 LDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERAD 221 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666777777777888888888888888888888777777777765444
No 99
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.68 E-value=4 Score=53.71 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001657 647 EKELLKLKKEGRKNEFER---HKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA 703 (1036)
Q Consensus 647 ekei~qLk~~~rK~e~Ei---~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r 703 (1036)
+-|...++.+..-.+.|. ..++...+.|...++.++..+.+.+..|++.+-.+|...
T Consensus 179 qae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~ 238 (1109)
T PRK10929 179 QAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQRE 238 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443 344446677777788888888888888888887655443
No 100
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=3.2 Score=52.37 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=43.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcC
Q 001657 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSG 930 (1036)
Q Consensus 861 ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~ 930 (1036)
...-++.+.++++..+.....++..+..+...|...+...+.++...-.+...+..++.+.+.-+-++..
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt 885 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT 885 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 3444556666666666666666666666666666666666666666666655555666665554444443
No 101
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.65 E-value=1.2 Score=51.75 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHH
Q 001657 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILEL 590 (1036)
Q Consensus 536 ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L 590 (1036)
.|..++.++...+.+.+++...+..+ +..+.++..+.+.+-..|-..|.-+
T Consensus 74 ~i~~~~~ql~~s~~~l~~~~~~I~~~----~~~l~~l~~q~r~qr~~La~~L~A~ 124 (420)
T COG4942 74 EIASLEAQLIETADDLKKLRKQIADL----NARLNALEVQEREQRRRLAEQLAAL 124 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433334443333333 2333344333333333344333333
No 102
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.64 E-value=2.9 Score=51.55 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=12.3
Q ss_pred ccEeeeccCCCCccccc
Q 001657 82 ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm 98 (1036)
+..+-+|++|||||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34556788888887765
No 103
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.59 E-value=4.4 Score=53.06 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=14.6
Q ss_pred CCccEeeeccCCCCccccc
Q 001657 80 YNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 80 ~N~ti~aYGqTgSGKTyTm 98 (1036)
.++.++-+|+||||||..|
T Consensus 24 ~~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3445567899999999776
No 104
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.58 E-value=3.9 Score=52.38 Aligned_cols=97 Identities=24% Similarity=0.307 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 579 KLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREKELLKLKK 655 (1036)
Q Consensus 579 ~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L---~rkmk~e~~~~~~~~~~~ekei~qLk~ 655 (1036)
....++++|.++++.. ...+...+.+.+.++..|+.+++.+..+.+.| ...++++...-++.....+.++.+|++
T Consensus 373 ~~d~l~k~I~~~~~~~--~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k 450 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQT--NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRK 450 (1074)
T ss_pred HHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344555555555433 34555555566666666666666666655555 344445555555566666677777777
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 001657 656 EGRKNEFERHKLEALNQRQKMV 677 (1036)
Q Consensus 656 ~~rK~e~Ei~~L~~~~~~q~~v 677 (1036)
+.+-...+|..|..-...+.+.
T Consensus 451 ~i~~~~~~l~~lk~~k~dkvs~ 472 (1074)
T KOG0250|consen 451 KIENISEELKDLKKTKTDKVSA 472 (1074)
T ss_pred HHHHHHHHHHHHHhcccchhhh
Confidence 7777776666666533333333
No 105
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.54 E-value=0.31 Score=52.69 Aligned_cols=117 Identities=22% Similarity=0.251 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1036)
Q Consensus 577 ~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~ 656 (1036)
+.....++.+|.+++.+...-...+ ...+.+.+...|+.+++..+...+. ++.++.....-...+++++..|+..
T Consensus 58 e~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~----le~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 58 ENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINS----LEDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333 4555666666667777666666655 4445555555566666777777777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 657 GRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1036)
Q Consensus 657 ~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ 698 (1036)
..+.+..+...+...+.....+.++...+.....+|++.+..
T Consensus 133 ~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 133 LERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 777777777777777777777777777777777777776654
No 106
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=3.8 Score=50.72 Aligned_cols=219 Identities=12% Similarity=0.038 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001657 678 LQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALA 757 (1036)
Q Consensus 678 LqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~ELE~l~~l~E~~~~~~~q~e~r~k~~ 757 (1036)
..|+++++....+.|+...+.-+......+.... ++-....+-.-.++.+.+..+..=++|-.+.+..
T Consensus 428 ~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gs------------A~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~ 495 (698)
T KOG0978|consen 428 AERQIRQVEELSEELQKKEKNFKCLLSEMETIGS------------AFEDMQEQNQKLLQELREKDDKNFKLMSERIKAN 495 (698)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5577777777777777666665543333322111 1111111111122567777777777777777777
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCcCCccccccCChhHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH------hhhc
Q 001657 758 DELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERER------ALVG 831 (1036)
Q Consensus 758 ~El~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~~------~~~~ 831 (1036)
+....|+.... .+..+|..|.........-+..+.++..-+..... ....
T Consensus 496 q~~k~L~~ek~------------------------~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~ 551 (698)
T KOG0978|consen 496 QKHKLLREEKS------------------------KLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLT 551 (698)
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHH
Confidence 77766665321 11222332222222222222222222222211000 0000
Q ss_pred cccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001657 832 RGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASS 911 (1036)
Q Consensus 832 k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~ 911 (1036)
...-.+-....+++..+++|+-.+.....+|-+++..+.+....+..+.-...+++.|+..|.+-+ .+.+
T Consensus 552 ~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl----------e~~k 621 (698)
T KOG0978|consen 552 QSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL----------ERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhc
Confidence 011122233444555555555544444445555555555555555544444445554444444333 3322
Q ss_pred hh--hccchHHHHHHHhhhcCCCC-CccccCccc
Q 001657 912 AS--QGSSWRSSKHFADDMSGPLS-PVSLPAPKQ 942 (1036)
Q Consensus 912 ~~--~~~q~~~~k~~~~e~~~~~~-~~~~~~~~~ 942 (1036)
.. ..+-.+.+.+.+.+..+-|- |+-...||.
T Consensus 622 ~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd 655 (698)
T KOG0978|consen 622 KEESGASADEVLAEELKEYKELLKCSVCNTRWKD 655 (698)
T ss_pred cccccccccHHHHHHHHHHHhceeCCCccCchhh
Confidence 22 23446777778888887654 444444443
No 107
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.42 E-value=3.2 Score=49.61 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=24.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Q 001657 491 WEHALWQNTMDKELNELNKRLEQKESEMKLFG 522 (1036)
Q Consensus 491 ~e~~~~q~kl~~El~eL~k~Le~kE~~~~~~~ 522 (1036)
.++......|.+.+..|+..|+.+|++++.+.
T Consensus 283 ~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 283 SQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666788888889999999988887765
No 108
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=3.8 Score=50.19 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 001657 795 MERIASLENMLNMSSKALVEMASQLSEAEE 824 (1036)
Q Consensus 795 ~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~ 824 (1036)
+.+...|+..+.+.+.-...+.+++++++.
T Consensus 527 ~~~~s~L~aa~~~ke~irq~ikdqldelsk 556 (1118)
T KOG1029|consen 527 TQRKSELEAARRKKELIRQAIKDQLDELSK 556 (1118)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777777777777788888888853
No 109
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=5.3 Score=51.01 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--HHH
Q 001657 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ---WKASREKELLKLKKEGRKNEFERHKLEALNQRQKMV--LQR 680 (1036)
Q Consensus 606 K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~---~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~v--LqR 680 (1036)
..+..+..+.++|.++++..-.++..|.......+. -.....+++.+..++.+.++..+........-..++ +..
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~ 303 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKK 303 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchh
Confidence 455556666666666666666665555533333332 234556677777777777777666632233333332 334
Q ss_pred HHHHHHHHH
Q 001657 681 KTEEAAIAT 689 (1036)
Q Consensus 681 K~eE~~a~~ 689 (1036)
+++++...+
T Consensus 304 rl~~~~k~i 312 (1141)
T KOG0018|consen 304 RLEEIEKDI 312 (1141)
T ss_pred HHHHhhhhH
Confidence 444444333
No 110
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.16 E-value=4.9 Score=49.12 Aligned_cols=166 Identities=21% Similarity=0.221 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001657 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSD---GHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDE 609 (1036)
Q Consensus 533 ~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~---~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~ 609 (1036)
...++..|..+|..+....+.........+...- .........++..+.+-+..+..|..+......|...-...-.
T Consensus 170 ~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~ 249 (522)
T PF05701_consen 170 NEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASA 249 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776555554333222210000 0001122344444555555555555544322222221112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-------H---HHHHH
Q 001657 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQR-------Q---KMVLQ 679 (1036)
Q Consensus 610 ~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~-------q---~~vLq 679 (1036)
.+..|+.+|..-...+....-..+.....+.........|+.+.+..+.+...|+..|...... . ...++
T Consensus 250 ~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 250 ELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444322222001222233333445555556666666666666555555442221 1 11255
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001657 680 RKTEEAAIATKRLKELLEA 698 (1036)
Q Consensus 680 RK~eE~~a~~krLke~Le~ 698 (1036)
.+...+.+.+..|+..|..
T Consensus 330 e~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 330 EREKEASSEVSSLEAELNK 348 (522)
T ss_pred HHHHHHHhHHhhHHHHHHH
Confidence 5555566666666666554
No 111
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.003 Score=73.61 Aligned_cols=94 Identities=24% Similarity=0.448 Sum_probs=63.7
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHH----HHHHHHHHH
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIP----QVMNALFNK 121 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giip----r~~~~LF~~ 121 (1036)
..|..-.-|.|.+.|. ..+..+|+++-.|.-.-++ .|.|||||||||..-...-..|-+|- -....||+.
T Consensus 3 ~~F~l~s~f~PaGDQP-----~AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 3 KPFKLHSPFKPAGDQP-----EAIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CceEeccCCCCCCCcH-----HHHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHH
Confidence 3577777888877643 3467788888777765554 59999999999932111111222221 256678888
Q ss_pred HHhhcccceEEEEeehhhhhhhhh
Q 001657 122 IETLRHQMEFQLHVSFIEILKEEV 145 (1036)
Q Consensus 122 i~~~~~~~~~~v~vS~~EIynE~v 145 (1036)
....-++..+..+||||..|+-+-
T Consensus 77 fk~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 77 FKEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HHHhCcCcceEEEeeeccccCccc
Confidence 877777778889999999887553
No 112
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.11 E-value=0.37 Score=51.97 Aligned_cols=164 Identities=25% Similarity=0.298 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 577 TLKLKALEAQILELKKKQESQ--------VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREK 648 (1036)
Q Consensus 577 ~~~l~~LE~el~~L~~e~~~~--------~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ek 648 (1036)
-+++++||.+++.|+++.... +-|.|.|+|.|..-.+ .-.|+-|...+.+....+++
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e---------------~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE---------------YSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh---------------hhhhhhhhhhHHHHHHHHHH
Confidence 367788888888888665541 2333333333332221 22344555666666666777
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCC-CCCch-HHHH
Q 001657 649 ELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPT-GQSNE-KSLQ 726 (1036)
Q Consensus 649 ei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~-~~~~~-~~~~ 726 (1036)
-...|--.+.-++..++-|+. |.+-.++.++-+...++++|.+||+-..+....+..-...++|- ..... .-.+
T Consensus 82 ~rqKlshdlq~Ke~qv~~lEg----Ql~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q 157 (307)
T PF10481_consen 82 TRQKLSHDLQVKESQVNFLEG----QLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQ 157 (307)
T ss_pred HHHHhhHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhh
Confidence 666677777777777776654 55557788999999999999999975554433222111101110 00000 0001
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 727 KWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1036)
Q Consensus 727 ~Wl~~ELE~l~~l~E~~~~~~~q~e~r~k~~~El~~Lk~ 765 (1036)
...+ ...+|....|..-.+.|+.+++|+-.|.-
T Consensus 158 ~~~~------sk~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 158 YYSD------SKYEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred hhhh------hhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 1111 24556667788889999999999998863
No 113
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.10 E-value=3 Score=46.08 Aligned_cols=201 Identities=16% Similarity=0.107 Sum_probs=119.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchHHHHHHHHHH
Q 001657 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHE 732 (1036)
Q Consensus 653 Lk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~E 732 (1036)
|++.++-++.-+.+--..+..|.++|. |.+..|.-.|+.+|..+.. |.-|
T Consensus 43 Lqk~lKLneE~ltkTi~qy~~QLn~L~-------aENt~L~SkLe~EKq~ker-----------------------LEtE 92 (305)
T PF14915_consen 43 LQKSLKLNEETLTKTIFQYNGQLNVLK-------AENTMLNSKLEKEKQNKER-----------------------LETE 92 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHH-------HHHHHHhHHHHHhHHHHHH-----------------------HHHH
Confidence 455555555555666666777777765 3455666667777665432 6677
Q ss_pred HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCCccccccCChhHHHHHHHHHHHHHHhcHHH
Q 001657 733 LEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKA 811 (1036)
Q Consensus 733 LE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq~~~~~~~~~ 811 (1036)
+|-. .+|.-|-...+.- .-.++.-|++-.|...|= -+ .-+-.+..|+.|...-..++.+
T Consensus 93 iES~rsRLaaAi~d~dqs--q~skrdlelafqr~rdEw------------~~------lqdkmn~d~S~lkd~ne~LsQq 152 (305)
T PF14915_consen 93 IESYRSRLAAAIQDHDQS--QTSKRDLELAFQRARDEW------------VR------LQDKMNSDVSNLKDNNEILSQQ 152 (305)
T ss_pred HHHHHHHHHHHHhhHHHH--HhhHHHHHHHHHHHhhHH------------HH------HHHHhcchHHhHHHHhHHHHHH
Confidence 7776 5665444433322 234456666555442211 10 0122244456665555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHH-------HHHHHHHHHHHHHHHH
Q 001657 812 LVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTE-------IKEIKEQLNDLVALLK 884 (1036)
Q Consensus 812 ~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k-------~~E~~~~~~el~~~~~ 884 (1036)
++..++...-++.... ..-.++.+---.|+.+.+.+..+.||+.|++.- +...-..-+.+.+++.
T Consensus 153 LskaesK~nsLe~elh--------~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~ 224 (305)
T PF14915_consen 153 LSKAESKFNSLEIELH--------HTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLS 224 (305)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555542211 122345555667999999999999999987644 4444455567788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001657 885 QSEAQRKELVKQQRMREQAVTIALASS 911 (1036)
Q Consensus 885 ~~~~e~~el~~~l~e~E~~~~~l~~~~ 911 (1036)
+++.++--|..||+.+-.++..--+..
T Consensus 225 QlqsEN~LLrQQLddA~~K~~~kek~V 251 (305)
T PF14915_consen 225 QLQSENMLLRQQLDDAHNKADNKEKTV 251 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888876544443
No 114
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=4.4 Score=50.12 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001657 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (1036)
Q Consensus 598 ~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L 628 (1036)
..+.+.+.+.++++..|++++...+.-.+.+
T Consensus 844 ~~la~e~~~ieq~ls~l~~~~k~~~nli~~l 874 (970)
T KOG0946|consen 844 KNLANELKLIEQKLSNLQEKIKFGNNLIKEL 874 (970)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3444455555555555555555554444443
No 115
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.84 E-value=4.2 Score=45.53 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=9.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 001657 570 QKMQDGHTLKLKALEAQILELK 591 (1036)
Q Consensus 570 ~Kl~~~~~~~l~~LE~el~~L~ 591 (1036)
+.|..+-+..+..|.++++.|.
T Consensus 170 n~LE~EQE~lvN~L~Kqm~~l~ 191 (310)
T PF09755_consen 170 NTLEQEQEALVNRLWKQMDKLE 191 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 116
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.83 E-value=5.2 Score=46.57 Aligned_cols=120 Identities=21% Similarity=0.256 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001657 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (1036)
Q Consensus 533 ~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~ 612 (1036)
.++.+..|++-...+++...+-..+-+.+ --.++|++..|....+..- ..++.+.+....- ...+..+.
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetL----qlelkK~k~nyv~LQEry~---~eiQqKnksvsqc----lEmdk~Ls 456 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETL----QLELKKIKANYVHLQERYM---TEIQQKNKSVSQC----LEMDKTLS 456 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHhhhHHHHHHHHH---HHHHHhhhHHHHH----HHHHHHhh
Confidence 34444555554444444444433333333 1234455555555554444 3344333333322 22344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001657 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE 663 (1036)
Q Consensus 613 ~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~E 663 (1036)
.=+++|++|+.-|.+|-+....-+...+..+..++.|.+-|..+..|.+.+
T Consensus 457 kKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 457 KKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666677666666655555666666666666667777776666665554
No 117
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.77 E-value=1.8 Score=46.88 Aligned_cols=20 Identities=45% Similarity=0.532 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001657 499 TMDKELNELNKRLEQKESEM 518 (1036)
Q Consensus 499 kl~~El~eL~k~Le~kE~~~ 518 (1036)
++..++..+++.+..++.++
T Consensus 35 k~~~e~e~~~~~~~~~~~e~ 54 (239)
T COG1579 35 KAKAELEALNKALEALEIEL 54 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444443
No 118
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.75 E-value=11 Score=49.57 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHH
Q 001657 724 SLQKWLEHELEVS-ANVHEVRFKYEK 748 (1036)
Q Consensus 724 ~~~~Wl~~ELE~l-~~l~E~~~~~~~ 748 (1036)
....|+.+.++.+ ..+.+.......
T Consensus 526 ~~~~~~~~~~e~l~~~~e~~~~~~~~ 551 (908)
T COG0419 526 ALKEELEEKLEKLENLLEELEELKEK 551 (908)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3456777777777 444444444443
No 119
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.67 E-value=8.2 Score=47.71 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1036)
Q Consensus 725 ~~~Wl~~ELE~l~~l~E~~~~~~~q~e~r~k~~~El~~Lk~ 765 (1036)
...+..+.+|++-.+.-.......-+.+.+.+-.|+..|..
T Consensus 486 Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 486 RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578999999988888888888888888888888877754
No 120
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.61 E-value=12 Score=49.27 Aligned_cols=47 Identities=30% Similarity=0.328 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHhhhhccCCCCCcccCCCChhhhhhhccCCCCcee---EEEeec
Q 001657 292 RGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKT---VMIACI 343 (1036)
Q Consensus 292 ~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrlLqdsLgGns~t---~mI~~v 343 (1036)
..+-+|..||.++-++. ...+.+|..-+-+.+-.+||- +++ .+|.|-
T Consensus 107 ~~~ktles~~~~~~~g~----k~tlS~r~~d~d~~~~~~lGV-skAIl~~VIFcH 156 (1294)
T KOG0962|consen 107 MEFKTLESVIWAINDGD----RVTLSGRSADLDAEMPLHLGV-SKAILENVIFCH 156 (1294)
T ss_pred HHHHHHhhhheeeecCc----cccccchhhhhhHHHHHhcCC-cHHHHhhhheec
Confidence 35778888888887543 347888888888888777754 333 345554
No 121
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=7.4 Score=46.08 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cc--ccc
Q 001657 499 TMDKELNELNKRLEQKESEMKLFGDIDTEA--LRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN-----SD--GHT 569 (1036)
Q Consensus 499 kl~~El~eL~k~Le~kE~~~~~~~~~~~~~--~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~-----~~--~~~ 569 (1036)
++..++.-|.+.+++--...-......... .|..+..++.+|+.+...+..|.|.+.+.+.+..+. .+ ++.
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E 91 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE 91 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 455666677766665443321111133333 345577888899999999988998888887765110 00 011
Q ss_pred hhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Q 001657 570 QKMQ-------DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL----------QNKI 632 (1036)
Q Consensus 570 ~Kl~-------~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L----------~rkm 632 (1036)
.-|- ..|-.++-+|+.+|..++. .+.+-++|.++|-+...++ .++|
T Consensus 92 esLLqESaakE~~yl~kI~eleneLKq~r~-----------------el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rl 154 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQKILELENELKQLRQ-----------------ELTNVQEENERLEKVHSDLKESNAAVEDQRRRL 154 (772)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 1111 2333444444433333332 2222222222222222222 5678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001657 633 KQEAEQFRQWKASREKELLKLKKEGRKNEFERHKL 667 (1036)
Q Consensus 633 k~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L 667 (1036)
+.|++.++-..+.+-.+...|.++.---+..+..|
T Consensus 155 r~elKe~KfRE~RllseYSELEEENIsLQKqVs~L 189 (772)
T KOG0999|consen 155 RDELKEYKFREARLLSEYSELEEENISLQKQVSNL 189 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 88888777777777777777766554444433333
No 122
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.41 E-value=11 Score=47.37 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 573 QDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNK 631 (1036)
Q Consensus 573 ~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rk 631 (1036)
..+-+..+.+++.++..|.-+..++. ..+.+...|.+ .|++++.++.+.+.++-+.
T Consensus 353 ~~ear~~~~q~~~ql~~le~~~~e~q-~~~qe~~~e~e--qLr~elaql~a~r~q~eka 408 (980)
T KOG0980|consen 353 KEEARRRIEQYENQLLALEGELQEQQ-REAQENREEQE--QLRNELAQLLASRTQLEKA 408 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554444332 23333333333 7788888877777776333
No 123
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.37 E-value=11 Score=47.26 Aligned_cols=142 Identities=20% Similarity=0.195 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001657 530 RHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDE 609 (1036)
Q Consensus 530 k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~ 609 (1036)
-.+|+..+..|+-+....+.+.++-+++-+.+ + ..+.++...-.++.+.+.....+.+.-.-.+.
T Consensus 360 ~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqL-----------r----~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ 424 (980)
T KOG0980|consen 360 IEQYENQLLALEGELQEQQREAQENREEQEQL-----------R----NELAQLLASRTQLEKAQVLVEEAENKALAAEN 424 (980)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------H----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34577777777777777766666555544422 1 12222222223333333334444455555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 610 AAKRLQAEIQSIKAQKVQLQNKIK---QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAA 686 (1036)
Q Consensus 610 ~~~~L~~ei~~lk~~kv~L~rkmk---~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~ 686 (1036)
+...+.+-+..+...+++|.+|.. ..++-.++...+.++++..|..++.+...+...++++++.+.-+|..--.|+.
T Consensus 425 ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 425 RYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 666666666777777777766654 34455566667888899999988888888888888877777666433333333
No 124
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.35 E-value=5.4 Score=43.55 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001657 381 MQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVE 439 (1036)
Q Consensus 381 i~~Lr~ei~~Lq~eL~~~~~~~~~~e~~~L~eki~~L~~e~~~L~~eL~~~~~~la~~E 439 (1036)
|..++.++......+... ...++....+....+.+...|.+.+...-..+..++
T Consensus 3 ~~~l~~eld~~~~~~~~~-----~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~e 56 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEA-----EEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAE 56 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455566666555555333 344445555555555555555555554444433333
No 125
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.16 E-value=2.5 Score=44.59 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 646 REKELLKLKKEGRKNEFERHKLEA-------LNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1036)
Q Consensus 646 ~ekei~qLk~~~rK~e~Ei~~L~~-------~~~~q~~vLqRK~eE~~a~~krLke~Le~e 699 (1036)
+.+.+..++.++...+..|..|+. .+.+|-+...+|+.++...++.|.+.+..-
T Consensus 123 L~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L 183 (194)
T PF15619_consen 123 LQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRL 183 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443 566777778888888888888887776643
No 126
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.13 E-value=8.8 Score=44.72 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=67.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKEL 650 (1036)
Q Consensus 571 Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei 650 (1036)
.++-...+....+-.+++.|+...+.--+..+.-.|..+.+..|.+.-..|+.--+.+..-|.+=-.+.++|-- -+
T Consensus 257 Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g----~l 332 (622)
T COG5185 257 ELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG----KL 332 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch----HH
Confidence 34444556666677777777777777777777777777777777777777777666663333333333334332 34
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001657 651 LKLKKEGRKNEFERHKLEALNQRQKMVLQR 680 (1036)
Q Consensus 651 ~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqR 680 (1036)
.+|+.+..+++.||..|++....-...+.+
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 457777777888888887755555554443
No 127
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.88 E-value=13 Score=45.44 Aligned_cols=193 Identities=20% Similarity=0.285 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhhhh
Q 001657 501 DKELNELNKRLEQKESEMKLFGDIDTEALR---HHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKMQD 574 (1036)
Q Consensus 501 ~~El~eL~k~Le~kE~~~~~~~~~~~~~~k---~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~---~~~~~~Kl~~ 574 (1036)
+.++..|--++.++|..++.+. .+.+.-. .++++......+-......+.+.|.++|+.+... +...-..|
T Consensus 239 Ekqvs~L~~q~~eKen~~kdl~-~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~l-- 315 (786)
T PF05483_consen 239 EKQVSLLQTQLKEKENKIKDLL-LLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKAL-- 315 (786)
T ss_pred HHHHHHHHHHHHhhHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4555566666666666664433 1111111 1133333334444455566777777777754110 01111122
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001657 575 GHTLKLKALEAQILELK-KKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN---KIKQEAEQFRQWKASREKEL 650 (1036)
Q Consensus 575 ~~~~~l~~LE~el~~L~-~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~r---kmk~e~~~~~~~~~~~ekei 650 (1036)
+..++.--..+..|. .+......+.+++......+.+++..|..++....--+. +.+++++....--..+..++
T Consensus 316 --e~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~el 393 (786)
T PF05483_consen 316 --EEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSEL 393 (786)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHH
Confidence 222232233333443 344445677788888888888888888877766544433 34455555555555555566
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 001657 651 LKLKKEGRKNEFERHKLEALNQRQK------MVLQRKTEEAAIATKRLKELLEA 698 (1036)
Q Consensus 651 ~qLk~~~rK~e~Ei~~L~~~~~~q~------~vLqRK~eE~~a~~krLke~Le~ 698 (1036)
....+.-..++.++..|........ ..+-+=.+++.+...+|...|..
T Consensus 394 eEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~ 447 (786)
T PF05483_consen 394 EEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQI 447 (786)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666655322222 33555566666666666665543
No 128
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.84 E-value=0.0076 Score=76.16 Aligned_cols=12 Identities=50% Similarity=0.650 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 001657 812 LVEMASQLSEAE 823 (1036)
Q Consensus 812 ~~~l~~ql~~~e 823 (1036)
+..|+.+++++.
T Consensus 483 ~~~L~~~Leda~ 494 (713)
T PF05622_consen 483 LEELQSQLEDAN 494 (713)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 455666777763
No 129
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.80 E-value=9.4 Score=43.45 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhhhhccCCCC-CcccCCCChhhhhhhccCCC-CceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCcc
Q 001657 293 GLLALGNVISALGDEKKRREG-VHVPYRDSKLTRLLQDSLGG-NSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (1036)
Q Consensus 293 SL~aLg~vI~aL~~~~~~~~~-~~iPyRdSkLTrlLqdsLgG-ns~t~mI~~vSP~~~~~~eTl~TL~fa~rar~Ik~kp 370 (1036)
+.+.||.||..++|.-..+.+ .|. + .||= .-.|.+|++|-...--..-||..|=.+++-
T Consensus 8 ~vlvLgGVIA~~gD~ig~kvGkarL--------r----lF~LRPkqTAvlvtvltG~liSA~tLailf~~~~~------- 68 (499)
T COG4372 8 FVLVLGGVIAYAGDTIGKKVGKARL--------R----LFGLRPKQTAVLVTVLTGMLISAATLAILFLLNRN------- 68 (499)
T ss_pred HHHHHHhHHHHHhhHHHhhhhHHHH--------h----HhccCcccceeehhhhhcchhhHHHHHHHHHhhhh-------
Confidence 578999999999873221111 111 1 1221 346777777766544445566666554331
Q ss_pred ccccccchHHHHHHHHHHHHHHHHH
Q 001657 371 VVNRDLISSDMQKLRQQLKYLQAEL 395 (1036)
Q Consensus 371 vvn~d~~~~ei~~Lr~ei~~Lq~eL 395 (1036)
.+. .--++..++.+|..++.+|
T Consensus 69 lr~---gVfqlddi~~qlr~~rtel 90 (499)
T COG4372 69 LRS---GVFQLDDIRPQLRALRTEL 90 (499)
T ss_pred HHh---hhhhHHHHHHHHHHHHHHH
Confidence 111 1123445556666666666
No 130
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.77 E-value=9.6 Score=43.39 Aligned_cols=31 Identities=29% Similarity=0.346 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001657 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (1036)
Q Consensus 598 ~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L 628 (1036)
.+|...+..+-..-+.|+....++|.+..+|
T Consensus 161 ~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 161 RQLEAQAQSLQASQKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555556666666666666666
No 131
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.65 E-value=0.009 Score=75.50 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=0.0
Q ss_pred chhhhhhhccccc
Q 001657 956 ESAAFVDQTRKMV 968 (1036)
Q Consensus 956 ~~~~~~~~~~~~~ 968 (1036)
++-.|+.+-|..+
T Consensus 685 ~~~sfL~rqR~~~ 697 (713)
T PF05622_consen 685 PGQSFLARQRQAT 697 (713)
T ss_dssp -------------
T ss_pred CCccHHHHhhccc
Confidence 3445665555544
No 132
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.65 E-value=18 Score=45.97 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHH
Q 001657 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL 578 (1036)
Q Consensus 499 kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~ 578 (1036)
+.+.|...|+.+|+.--.. ++. .+.--.|++.-++++-.+++....|.+......- ..+.....|++.+.+.
T Consensus 21 kae~e~~~lk~~l~~~~~~--~~~---~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~---~~~s~e~e~~~~~le~ 92 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQQ--KLA---LEDRVSHLDGALKECMRQLRQVREEQEQKIHEAV---AKKSKEWEKIKSELEA 92 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH--hHH---HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH---HHHhHHHHHHHHHHHH
Confidence 4467777787777643211 110 1111235666677777777777555554443322 1223344566777777
Q ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001657 579 KLKALEAQILELKKKQE-----------SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (1036)
Q Consensus 579 ~l~~LE~el~~L~~e~~-----------~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L 628 (1036)
++.++.+++..+..+.. -...|.+.|...|..+..|...|+...+.-.-|
T Consensus 93 ~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~L 153 (769)
T PF05911_consen 93 KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSL 153 (769)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 77777777766554433 345566677777777777777777777766665
No 133
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.43 E-value=8.3 Score=41.13 Aligned_cols=142 Identities=21% Similarity=0.293 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhh-----
Q 001657 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQ----- 573 (1036)
Q Consensus 499 kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~----- 573 (1036)
.+.....++.+-++..|..+..+. ...+.+-.....++..+..||+.+.+.+.+++....+-..+..
T Consensus 34 e~~~~~~~m~~i~~e~Ek~i~~~i--------~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 34 ELHKENQEMRKIMEEYEKTIAQMI--------EEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH--------HHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344445555555555555543322 1122334455677888888888888888887433222111111
Q ss_pred -hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 574 -DGHTLKLKALEAQILELK-KKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELL 651 (1036)
Q Consensus 574 -~~~~~~l~~LE~el~~L~-~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~ 651 (1036)
+.|+.-...|.+.+.+.. +=.....+...+|...+.++...+.+|.++++ ....++.
T Consensus 106 i~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~---------------------~~~~e~~ 164 (207)
T PF05010_consen 106 IEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRS---------------------KHQAELL 164 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HhHHHHH
Confidence 111111111111111111 11111234444444444444444444444444 4444777
Q ss_pred HHHHHhhhhHHHHHHHHH
Q 001657 652 KLKKEGRKNEFERHKLEA 669 (1036)
Q Consensus 652 qLk~~~rK~e~Ei~~L~~ 669 (1036)
.|+..+||.+..+..|+.
T Consensus 165 aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 165 ALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888888888877764
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.40 E-value=18 Score=44.96 Aligned_cols=89 Identities=19% Similarity=0.339 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccch--hhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001657 531 HHFGKKIMELEEEKRIVQQE---RDRLLAEIENLAANSDGHTQ--KMQDGHTLKLKALEAQILELKKKQ---ESQVELLK 602 (1036)
Q Consensus 531 ~~~e~ki~~Le~ei~~lqkE---rd~Ll~~l~~~~~~~~~~~~--Kl~~~~~~~l~~LE~el~~L~~e~---~~~~~L~K 602 (1036)
...+.+|.+|+..+..++.+ +..|++.+++ ++..-.. .-..+.+.+|.+|+.-...|..+. ...-....
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqs---dk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq 194 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQS---DKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQ 194 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 34466777777766666544 3344444432 2211111 112344455555555444443222 11111111
Q ss_pred -HHHhHHHHHHHHHHHHHHHH
Q 001657 603 -QKHKSDEAAKRLQAEIQSIK 622 (1036)
Q Consensus 603 -~K~K~E~~~~~L~~ei~~lk 622 (1036)
.++.+..++.+|+..+..++
T Consensus 195 ~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 195 HVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555554
No 135
>PRK09039 hypothetical protein; Validated
Probab=94.20 E-value=7.8 Score=44.78 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001657 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEA 610 (1036)
Q Consensus 531 ~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~ 610 (1036)
..++..|..|+.++..++.+|..|.......... ...-+.++..++.+|..++..- ...-.+
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~--------~~~~~~~~~~l~~~L~~~k~~~----------se~~~~ 138 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELAGA--------GAAAEGRAGELAQELDSEKQVS----------ARALAQ 138 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------cchHHHHHHHHHHHHHHHHHHH----------HHhhHH
Confidence 3477889999999999999999888877643110 0122333444443333333221 122334
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001657 611 AKRLQAEIQSIKAQKVQ 627 (1036)
Q Consensus 611 ~~~L~~ei~~lk~~kv~ 627 (1036)
+..|+.+|..+++|...
T Consensus 139 V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 139 VELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777776333
No 136
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.08 E-value=9.7 Score=40.61 Aligned_cols=108 Identities=20% Similarity=0.299 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001657 584 EAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE 663 (1036)
Q Consensus 584 E~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~E 663 (1036)
..-..+|..-+..-+.|-+-=.|.-..+..+...-+.+|+...+...+++.+-.+|...+...+..+. +.-.|
T Consensus 79 dq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~-------~ANee 151 (207)
T PF05010_consen 79 DQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLE-------KANEE 151 (207)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 33344555555555555565556666777888888888888888899999999999998888875554 44566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 664 RHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1036)
Q Consensus 664 i~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ 698 (1036)
|..+...++.....|+-.++-.+..+.-|.+.|+.
T Consensus 152 i~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 152 IAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888888877774
No 137
>PRK09039 hypothetical protein; Validated
Probab=93.89 E-value=6.8 Score=45.22 Aligned_cols=40 Identities=13% Similarity=-0.008 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001657 632 IKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALN 671 (1036)
Q Consensus 632 mk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~ 671 (1036)
.+......+-....+..+|..||.++..-+.+|...+...
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555677777888888888777777777666644
No 138
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.64 E-value=6.8 Score=38.75 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=27.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 650 LLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1036)
Q Consensus 650 i~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le 697 (1036)
....+..+...+..-..-....+.+..-++++++++...|+=|-+.||
T Consensus 82 ~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 82 AESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444445555555666777777777777766665
No 139
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.60 E-value=7.5 Score=39.05 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 863 WEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVT 905 (1036)
Q Consensus 863 ~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~ 905 (1036)
+-++-+++.....+.+.+..++.+....+.+.|+....|....
T Consensus 83 q~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~ 125 (143)
T PF12718_consen 83 QLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERD 125 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence 3333444444444444444444444444444444444444333
No 140
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.60 E-value=19 Score=42.23 Aligned_cols=76 Identities=32% Similarity=0.340 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAA 686 (1036)
Q Consensus 607 ~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~ 686 (1036)
....-..|+-++..+|.-.+.|+-+--.|...-.... ..-+++.+-+-+++.||.+|+. |+.+.|.+.
T Consensus 409 sr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksv----sqclEmdk~LskKeeeverLQ~--------lkgelEkat 476 (527)
T PF15066_consen 409 SRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSV----SQCLEMDKTLSKKEEEVERLQQ--------LKGELEKAT 476 (527)
T ss_pred HHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH----HHHHHHHHHhhhhHHHHHHHHH--------HHHHHHHHH
Confidence 3344456777777788888887666555544333222 2335567777888888888874 555666655
Q ss_pred -HHHHHHHH
Q 001657 687 -IATKRLKE 694 (1036)
Q Consensus 687 -a~~krLke 694 (1036)
+++..||.
T Consensus 477 ~SALdlLkr 485 (527)
T PF15066_consen 477 TSALDLLKR 485 (527)
T ss_pred HHHHHHHHH
Confidence 56666654
No 141
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.40 E-value=0.04 Score=60.71 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=29.3
Q ss_pred ccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 67 ~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
-.+.|++..+.+--++.|+..|+||||||+||
T Consensus 111 LglP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 111 LGLPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred cCCCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 34678999999999999999999999999999
No 142
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.33 E-value=34 Score=44.38 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001657 794 RMERIASLENMLNMSSKALVEMASQLSEAE 823 (1036)
Q Consensus 794 r~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e 823 (1036)
...+|.+|+......++++-++..+.+.++
T Consensus 659 ~d~~ie~le~e~~~l~~~~~~l~~~~~~~e 688 (1074)
T KOG0250|consen 659 FDDEIEDLEREASRLQKEILELENQRREAE 688 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666555554
No 143
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.27 E-value=17 Score=40.67 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 612 KRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREKELLKLKK 655 (1036)
Q Consensus 612 ~~L~~ei~~lk~~kv~L---~rkmk~e~~~~~~~~~~~ekei~qLk~ 655 (1036)
..|..++..+...+-+| .+.|++....++........++.+|+.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555 455556666666666666666666664
No 144
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.13 E-value=0.04 Score=59.36 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=28.1
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..||||.-+..+ + +...|.. +..+.+.--..|| .+|-||++|+||||-|
T Consensus 3 ~~~tFdnfv~g~-~-N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVGE-S-NELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--TT-T-THHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHH
T ss_pred CCCccccCCcCC-c-HHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHH
Confidence 369999987432 3 3444432 3334333112233 4788999999999987
No 145
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.07 E-value=27 Score=42.62 Aligned_cols=89 Identities=26% Similarity=0.272 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL---KKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAI 687 (1036)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qL---k~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a 687 (1036)
+..|+..|..++..-.++.-++.++.+.|++.....+.-+..+ +.+++....|+..+......+.+-++.|+.+-..
T Consensus 290 ~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~ 369 (511)
T PF09787_consen 290 IQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKES 369 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3333333333333334444445555566655555555555444 6667778888888888888888889999999888
Q ss_pred HHHHHHHHHHHH
Q 001657 688 ATKRLKELLEAR 699 (1036)
Q Consensus 688 ~~krLke~Le~e 699 (1036)
.+.+|...|-++
T Consensus 370 E~q~lr~~l~~~ 381 (511)
T PF09787_consen 370 EIQKLRNQLSAR 381 (511)
T ss_pred HHHHHHHHHHHH
Confidence 889998877753
No 146
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.98 E-value=30 Score=42.82 Aligned_cols=53 Identities=23% Similarity=0.383 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 502 KELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 502 ~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
..+.+++..|.+-|.....+. -... .+.+..+++.+..++.+.+.+.+.+..+
T Consensus 75 ~~~~~ie~~L~~ae~~~~~~r---f~ka----~~~i~~~~~~l~~~e~~i~~i~~~l~~L 127 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYADKYR---FKKA----KQAIKEIEEQLDEIEEDIKEILDELDEL 127 (560)
T ss_pred HhhHHHHHHHHHHHHHHhccc---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777776654432 1111 1334444444444444444444444443
No 147
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.94 E-value=19 Score=40.49 Aligned_cols=138 Identities=25% Similarity=0.290 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001657 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (1036)
Q Consensus 533 ~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~ 612 (1036)
+.+|++.|++++..|..|-..|..+-.+. .++...|-.+- ...|.......+.|...-.+.-....
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~----EekEqqLv~dc----------v~QL~~An~qia~LseELa~k~Ee~~ 230 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTETDTY----EEKEQQLVLDC----------VKQLSEANQQIASLSEELARKTEENR 230 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhc----cHHHHHHHHHH----------HHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 34666666666666666655555444333 22222222222 23333333334444444445556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRL 692 (1036)
Q Consensus 613 ~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krL 692 (1036)
..+++|.++-.+.++|.++.+.=.....+- ...+...+.-.+....| -.-|+-|..|..+...+.
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL----~q~L~~ske~Q~~L~aE-----------L~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEEL----QQHLQASKESQRQLQAE-----------LQELQDKYAECMAMLHEA 295 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 788899999999999888877544333221 11222222222222222 333667777777766666
Q ss_pred HHHHHHH
Q 001657 693 KELLEAR 699 (1036)
Q Consensus 693 ke~Le~e 699 (1036)
+++|..-
T Consensus 296 QEElk~l 302 (306)
T PF04849_consen 296 QEELKTL 302 (306)
T ss_pred HHHHHHh
Confidence 6665543
No 148
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=25 Score=41.90 Aligned_cols=141 Identities=20% Similarity=0.251 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHH----H-HHHHH
Q 001657 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQE----S-QVELL 601 (1036)
Q Consensus 527 ~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~----~-~~~L~ 601 (1036)
.-..++++..+..++++....+.|.|+++.-+.+.+..+++...|+.+-- ....+-.+...+|+.++. + ...+.
T Consensus 420 ~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele-r~~kdqnkkvaNlkHk~q~Ekkk~aq~le 498 (654)
T KOG4809|consen 420 ADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE-RHMKDQNKKVANLKHKQQLEKKKNAQLLE 498 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC-chhhhhhhHHhhHHHHHHHHHHHHHHHHH
Confidence 34456678888888888888899999988877776544444444443211 111111222222221111 0 11111
Q ss_pred HHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001657 602 KQKHKSD-----EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1036)
Q Consensus 602 K~K~K~E-----~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~ 669 (1036)
-..+.-+ ++.-..++.|..|.+.|..| -.++.-....+...++++..+.+|+..-||.-.++-.+..
T Consensus 499 e~rrred~~~d~sqhlq~eel~~alektkQel-~~tkarl~stqqslaEke~HL~nLr~errk~Lee~lemK~ 570 (654)
T KOG4809|consen 499 EVRRREDSMADNSQHLQIEELMNALEKTKQEL-DATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKK 570 (654)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHhhCh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111111 12222556666777777664 3344555667788888999999999888888777766664
No 149
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.91 E-value=22 Score=41.00 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 001657 404 SDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHC 441 (1036)
Q Consensus 404 ~~e~~~L~eki~~L~~e~~~L~~eL~~~~~~la~~Ee~ 441 (1036)
+.-...|..++..|.++|..|..+|+.+...|..+.+.
T Consensus 42 P~~~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qee 79 (552)
T KOG2129|consen 42 PSPGESLGARVSSLSQRNKVLKGELETLKGKCKIMQEE 79 (552)
T ss_pred CCCHHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhc
Confidence 34455677777777777777777777777777655444
No 150
>PRK06893 DNA replication initiation factor; Validated
Probab=92.90 E-value=0.044 Score=59.47 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=32.6
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..++||..++.+ . .. .+..+...+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~-~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADN-N-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCC-h-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 478999999543 2 11 2233334444578888999999999999998
No 151
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=92.87 E-value=15 Score=39.18 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKEL 650 (1036)
Q Consensus 578 ~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei 650 (1036)
..+-+.+..+..|+.+......+.+.|...+..|..|+.++..+...+....+.|+.. |=.-++.++++.
T Consensus 54 ~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~q---fl~EK~~LEke~ 123 (206)
T PF14988_consen 54 DQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQ---FLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3444444555566666666667777777778888888888777777777765555543 444444555544
No 152
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.79 E-value=11 Score=39.31 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=43.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhc
Q 001657 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMS 929 (1036)
Q Consensus 861 ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~ 929 (1036)
.+..++.+...+......+..+...|..+...|.+|+=++|..+++--...+.-+.++++++..++|..
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~ 171 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYR 171 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555555555555566666666666667777777777777666666555555667777776666543
No 153
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.11 E-value=17 Score=37.96 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=19.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQ 897 (1036)
Q Consensus 861 ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l 897 (1036)
-+.+...++.++..-+.+.......+..+...|..|+
T Consensus 152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555655555555555555555555544443
No 154
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.66 E-value=43 Score=41.59 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001657 890 RKELVKQQRMREQAVTI 906 (1036)
Q Consensus 890 ~~el~~~l~e~E~~~~~ 906 (1036)
.+.+.+...+.|.++..
T Consensus 573 tG~~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 573 TGTISREIRDLEEQIDT 589 (594)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33355555555555544
No 155
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.48 E-value=32 Score=39.73 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhH------HHHH
Q 001657 596 SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKAS----REKELLKLKKEGRKNE------FERH 665 (1036)
Q Consensus 596 ~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~----~ekei~qLk~~~rK~e------~Ei~ 665 (1036)
-.+++.+-.+|+|.+-..-+..++++++.+|+|-.++++|.+-.-..... ++.|..-|.+++-.-- ..|.
T Consensus 159 ~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia 238 (552)
T KOG2129|consen 159 FVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIA 238 (552)
T ss_pred HHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhh
Confidence 36777787888888888778889999999999988888776544332222 2222222222220000 0022
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 666 KLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1036)
Q Consensus 666 ~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ 698 (1036)
+.-..+-+....+++-+.-+.+.+.||+-.|.+
T Consensus 239 ~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 239 KIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred cCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123334445777777778888888777753
No 156
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.23 E-value=49 Score=41.49 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=25.0
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 001657 853 NVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQS--EAQRKELVKQQRM 899 (1036)
Q Consensus 853 ~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~--~~e~~el~~~l~e 899 (1036)
+.+...+..+.+++.+++...-.+.++++.+.-+ +++.+.+.+.++.
T Consensus 848 ~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~ 896 (970)
T KOG0946|consen 848 NELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKT 896 (970)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHH
Confidence 3334444466667767766666666666665433 3333334444433
No 157
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.23 E-value=39 Score=40.37 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 737 ANVHEVRFKYEKQSQVQAALADELTILKQV 766 (1036)
Q Consensus 737 ~~l~E~~~~~~~q~e~r~k~~~El~~Lk~~ 766 (1036)
..++-.++.+..+++--..+.+.+..|++.
T Consensus 346 t~le~T~~~l~~~~er~~~l~e~v~al~rl 375 (772)
T KOG0999|consen 346 TQLEHTEGDLMEQRERVDRLTEHVQALRRL 375 (772)
T ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555677777777777888888888873
No 158
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.08 E-value=18 Score=41.39 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 001657 578 LKLKALEAQILELK 591 (1036)
Q Consensus 578 ~~l~~LE~el~~L~ 591 (1036)
.+...|+.++..|+
T Consensus 184 ~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 184 ERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 159
>PRK06620 hypothetical protein; Validated
Probab=91.04 E-value=0.08 Score=56.87 Aligned_cols=49 Identities=27% Similarity=0.317 Sum_probs=31.8
Q ss_pred ceeEEcceeeCCCCCCccccccccchhhHHHhhcCCC---ccEeeeccCCCCccccc
Q 001657 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 45 ~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N---~ti~aYGqTgSGKTyTm 98 (1036)
...|+||..+.. .+ +...|..+. .+.+. -|+| -.++-||++||||||.+
T Consensus 10 ~~~~tfd~Fvvg-~~-N~~a~~~~~-~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 10 SSKYHPDEFIVS-SS-NDQAYNIIK-NWQCG--FGVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCCchhhEec-cc-HHHHHHHHH-HHHHc--cccCCCcceEEEECCCCCCHHHHH
Confidence 357899998843 33 445555432 22221 1454 35899999999999999
No 160
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.92 E-value=49 Score=40.94 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=40.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001657 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSA 912 (1036)
Q Consensus 861 ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~ 912 (1036)
.|.+....+++..+++.....-+..+.....++...-...|..+-..+|=.+
T Consensus 459 ~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~ 510 (560)
T PF06160_consen 459 ELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRS 510 (560)
T ss_pred HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6666677777778888888888888888888888888888888877776543
No 161
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.79 E-value=30 Score=38.22 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=32.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001657 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASS 911 (1036)
Q Consensus 861 ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~ 911 (1036)
++..++.+..|++..+..+......++.+...+..+....+..-.......
T Consensus 184 ~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~qka~a~a~a~~~a~~~ 234 (265)
T COG3883 184 QLNSLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAAAAEAAKQE 234 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666676777777777777777777777755555555444444333
No 162
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.74 E-value=39 Score=41.06 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccc---cc
Q 001657 500 MDKELNELNKRLEQKESEMKLFGD-ID--TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN----SDG---HT 569 (1036)
Q Consensus 500 l~~El~eL~k~Le~kE~~~~~~~~-~~--~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~----~~~---~~ 569 (1036)
++.++.+++.+|++.|..+..+.. +. .......+...+..++.++...+.++..+...+..+... ... ..
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~ 245 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGS 245 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCccc
Confidence 466777777777777777665531 10 011112344666677777776666666666655554210 000 00
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhH
Q 001657 570 QKMQDGHTLKLKALEAQILELKKKQE-SQVELLKQKHKS 607 (1036)
Q Consensus 570 ~Kl~~~~~~~l~~LE~el~~L~~e~~-~~~~L~K~K~K~ 607 (1036)
...-...+.++.+++.++..|...-. .|-.+..++.+.
T Consensus 246 ~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi 284 (498)
T TIGR03007 246 SVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREI 284 (498)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 11223456778888888888764333 344444444433
No 163
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.67 E-value=57 Score=41.20 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.8
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
+++-||+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5567899999999987
No 164
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.50 E-value=32 Score=38.02 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001657 628 LQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1036)
Q Consensus 628 L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~ 668 (1036)
++..+..........+..+..-+.+|+....+...|+..|+
T Consensus 177 l~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 177 LQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444455555555666666666667777777777766666
No 165
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.32 E-value=36 Score=38.38 Aligned_cols=66 Identities=27% Similarity=0.299 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001657 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA 703 (1036)
Q Consensus 634 ~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r 703 (1036)
.++.......+.+.-|+..-.+...+.+.||.+|.+ |..-|+++.+...+.+.+|.-.|..-|.+.
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls----qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q 271 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLS----QIVDLQQRCKQLAAENEELQQHLQASKESQ 271 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 444555566677777777777888888888888875 444588888888888999988888766554
No 166
>PF13514 AAA_27: AAA domain
Probab=90.12 E-value=84 Score=42.35 Aligned_cols=57 Identities=28% Similarity=0.292 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001657 381 MQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVE 439 (1036)
Q Consensus 381 i~~Lr~ei~~Lq~eL~~~~~~~~~~e~~~L~eki~~L~~e~~~L~~eL~~~~~~la~~E 439 (1036)
|..+..++..++.++... ......+..+...+..+..+...+..++...+......+
T Consensus 152 in~~l~~l~e~~~~l~~~--~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~le 208 (1111)
T PF13514_consen 152 INQALKELKELERELREA--EVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLE 208 (1111)
T ss_pred HHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555433 233566777777777777777777777766665554443
No 167
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.81 E-value=76 Score=41.36 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 665 HKLEALNQRQKMVLQRKTEEAAIATKRLKEL 695 (1036)
Q Consensus 665 ~~L~~~~~~q~~vLqRK~eE~~a~~krLke~ 695 (1036)
..|+..++.-...|.++++..+++.+|.+..
T Consensus 1664 ~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L 1694 (1758)
T KOG0994|consen 1664 EILQKYYELVDRLLEKRMEGSQAARERAEQL 1694 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 3666677777777778877777766555443
No 168
>PRK09087 hypothetical protein; Validated
Probab=89.70 E-value=0.14 Score=55.47 Aligned_cols=46 Identities=28% Similarity=0.257 Sum_probs=31.5
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..|+||..+..+ + +...|. ++.....-.|..++-||++||||||.+
T Consensus 16 ~~~~~~~Fi~~~-~-N~~a~~-----~l~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 16 PAYGRDDLLVTE-S-NRAAVS-----LVDHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCChhceeecC-c-hHHHHH-----HHHhcccCCCCeEEEECCCCCCHHHHH
Confidence 568999988533 2 344555 334333223556899999999999999
No 169
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.64 E-value=39 Score=37.81 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001657 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAA 563 (1036)
Q Consensus 533 ~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~ 563 (1036)
+..++.++.+++..+..+||.+.+++.++..
T Consensus 46 ln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 46 LNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566666555555533
No 170
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.63 E-value=68 Score=40.54 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=27.1
Q ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 729 LEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1036)
Q Consensus 729 l~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk~ 765 (1036)
|..-|+.. ..++-+.+++..+++--..+.+.+..|++
T Consensus 284 L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 284 LLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444 46777788888888888888888988887
No 171
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.61 E-value=31 Score=36.55 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001657 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1036)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~ 669 (1036)
..+-+.+|-++=..+..-+|-+++.+.+.++.....++.+-....++-+...++..|..
T Consensus 52 ~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 52 YEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555566666666666666666666666666666666666666666666655
No 172
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.28 E-value=0.16 Score=60.11 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=26.4
Q ss_pred hhhHHHhhcCCCccEeeeccCCCCccccccc
Q 001657 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (1036)
Q Consensus 70 ~plV~~~l~G~N~ti~aYGqTgSGKTyTm~G 100 (1036)
...+..++..-++.|+.-||||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3456677888999999999999999999944
No 173
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.25 E-value=6.5 Score=44.81 Aligned_cols=28 Identities=46% Similarity=0.637 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 534 GKKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 534 e~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
...+..+++++..+++|.+.+.+++..+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666555
No 174
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.21 E-value=26 Score=35.09 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001657 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (1036)
Q Consensus 498 ~kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~ 562 (1036)
..+.+.+..|.++|+..+.....+. .+.+. ....|..|+.++..+..++..|..++.++.
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~-~daEn----~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLI-LDAEN----SKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666655554443222 12221 235566677777777777777777776663
No 175
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.05 E-value=37 Score=36.69 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001657 501 DKELNELNKRLEQKE 515 (1036)
Q Consensus 501 ~~El~eL~k~Le~kE 515 (1036)
+.++..|+.+..+++
T Consensus 51 esqL~q~etrnrdl~ 65 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLE 65 (333)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444443333333
No 176
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.96 E-value=75 Score=40.13 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=40.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001657 604 KHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKL 667 (1036)
Q Consensus 604 K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L 667 (1036)
...+++++..++.++.+..+...++..+++.+.....+.+..+++++.+++.+......++..+
T Consensus 225 ~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 225 YEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666666666777766666666555555444
No 177
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.85 E-value=0.14 Score=62.69 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=33.0
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..|+||..+... + +...|. .+..++.+.-.+||. ||-||.+|+||||.+
T Consensus 283 ~~~TFDnFvvG~-s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL 331 (617)
T PRK14086 283 PKYTFDTFVIGA-S-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLL 331 (617)
T ss_pred CCCCHhhhcCCC-c-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHH
Confidence 469999877432 2 333443 344455544456776 899999999999998
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.84 E-value=8.9 Score=44.64 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=22.5
Q ss_pred EEcCCHHHHHHHHHhcccCcccccCCCCC-CCCCceeEEEEEEEee
Q 001657 193 VAVNTLQEMAACLEQGSLSRATGSTNMNN-QSSRSHAIFTITLEQM 237 (1036)
Q Consensus 193 ~~V~s~~e~~~~l~~g~~~R~~~~t~~N~-~SSRSH~Ifti~v~q~ 237 (1036)
+...+..++..++..=+ ...+|. .+---|++|-..|+-.
T Consensus 120 IkFr~q~da~~Fy~efN------Gk~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFN------GKQFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred EEeccchhHHHHHHHcC------CCcCCCCCccceeEEEEEEEEEE
Confidence 55677777777775421 112222 1224699988877754
No 179
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.83 E-value=48 Score=37.75 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001657 617 EIQSIKAQKVQLQNKIKQEAEQFRQWKASR----------EKELLKLKKEGRKNEFERHKLEALNQRQKMVL 678 (1036)
Q Consensus 617 ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~----------ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vL 678 (1036)
.+..+..+-..|..++..-..+|.+....+ .+|+..+-++.++-+.|...+...++.-...|
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 777777777888888887777777766543 34555666666666666555555444444333
No 180
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=88.82 E-value=45 Score=37.35 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcCCCCCc--cccCccc
Q 001657 865 KDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSGPLSPV--SLPAPKQ 942 (1036)
Q Consensus 865 ~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~~~~~~--~~~~~~~ 942 (1036)
...++.-++.+|.-|....+-|+.+..+++.-++..+..++. +.+.-++++|-+.. ..|..+.
T Consensus 290 ~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~---------------k~~~~~la~pe~~~~~~~~~~~~ 354 (391)
T KOG1850|consen 290 RDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSA---------------KNAMKDLATPESKPCIILDSEKK 354 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccch---------------hhhhhhhcCccccccccccchhc
Confidence 345566778888999999999999999999999999888766 44555677777754 3355566
Q ss_pred cccccCcccCcccchhhh
Q 001657 943 LKFTPGIVNGSVRESAAF 960 (1036)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~ 960 (1036)
+.-+|-.+-|+.-++.+-
T Consensus 355 ~~ts~~~a~a~~~~gep~ 372 (391)
T KOG1850|consen 355 LNTSSKRAAASHLEGEPK 372 (391)
T ss_pred cCCchhcccccCCCCCcc
Confidence 666665555554444443
No 181
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=88.78 E-value=33 Score=35.87 Aligned_cols=108 Identities=22% Similarity=0.271 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHH
Q 001657 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKL 580 (1036)
Q Consensus 501 ~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l 580 (1036)
+....+.-+.|..+|..+.... -..+ .-+.++.+|+++.+.+....+.|...-+.+ ..=.+.|+..+
T Consensus 80 drK~eEVarkL~iiE~dLE~~e-eraE----~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~--------~q~~d~~e~~i 146 (205)
T KOG1003|consen 80 DRKYEEVARKLVIIEGELERAE-ERAE----AAESQSEELEEDLRILDSNLKSLSAKEEKL--------EQKEEKYEEEL 146 (205)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHH----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHH--------hhhHHHHHHHH
Confidence 4455566666666665554332 1111 124667777777776644433333222211 11112333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001657 581 KALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (1036)
Q Consensus 581 ~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~ 624 (1036)
+.+. +.|+......-...+.=.+++..+.+|+..+..++-.
T Consensus 147 k~lt---dKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 147 KELT---DKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHH---HHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 3333 3444444444455566666666666666666555443
No 182
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.48 E-value=58 Score=38.26 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001657 678 LQRKTEEAAIATKRLKELL 696 (1036)
Q Consensus 678 LqRK~eE~~a~~krLke~L 696 (1036)
++..+.++.+.+..++..+
T Consensus 251 ~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 251 AQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 183
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.46 E-value=16 Score=35.61 Aligned_cols=88 Identities=24% Similarity=0.372 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001657 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (1036)
Q Consensus 534 e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~ 613 (1036)
+..+..|.+++..++.+|+.+.+++-.+-...+ .+ ......+..|+.++.+|+.+... ++-+--.....+.+
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e----~~-~~~~~~~~~L~~el~~l~~ry~t---~LellGEK~E~veE 100 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENE----EL-RALKKEVEELEQELEELQQRYQT---LLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHhcchHHHHHH
Confidence 345567777777888888888877776522211 11 22345667778777777765544 44444444567899
Q ss_pred HHHHHHHHHHHHHHHH
Q 001657 614 LQAEIQSIKAQKVQLQ 629 (1036)
Q Consensus 614 L~~ei~~lk~~kv~L~ 629 (1036)
|+.+|.++|..--..+
T Consensus 101 L~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 101 LRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988765543
No 184
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.29 E-value=94 Score=40.43 Aligned_cols=33 Identities=9% Similarity=0.257 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001657 588 LELKKKQESQVELLKQKHKSDEAAKRLQAEIQS 620 (1036)
Q Consensus 588 ~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~ 620 (1036)
..+....+++..+.+...+.+..+...+..+.+
T Consensus 255 ~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 255 REIRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444455566666666677777766666655
No 185
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.16 E-value=32 Score=44.18 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-cHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 500 MDKELNELNKRLEQKESEMKLFGDI-DTEA--LRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 500 l~~El~eL~k~Le~kE~~~~~~~~~-~~~~--~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
++.++.++.++++..|..+..+... .... ...-.++++..|+.++...+.++.........+
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888777655311 0000 001134778888888888877777766665554
No 186
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.02 E-value=25 Score=44.60 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=10.8
Q ss_pred CCCCCceEEecCCCcEE
Q 001657 170 SGRPPIQIRESSNGVIT 186 (1036)
Q Consensus 170 ~~~~~l~i~e~~~~~~~ 186 (1036)
+..|++-+.-..+|.++
T Consensus 294 ~~~p~~~via~~~G~l~ 310 (717)
T PF10168_consen 294 PSLPPVLVIATSNGKLY 310 (717)
T ss_pred cCCCCEEEEEecCCeEE
Confidence 44566666666677666
No 187
>PF15294 Leu_zip: Leucine zipper
Probab=87.27 E-value=15 Score=40.72 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001657 540 LEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 540 Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
|..+|..|+.|.+.|.+++..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~l 151 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSL 151 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544
No 188
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=87.19 E-value=46 Score=35.62 Aligned_cols=82 Identities=16% Similarity=0.390 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 001657 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQE-----SQVELL 601 (1036)
Q Consensus 527 ~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~-----~~~~L~ 601 (1036)
+.+-..|..++..|+.+...-.++...+..+|..+ ....+++...+..+..|+.++...+.+-. -+.++.
T Consensus 39 ~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l-----~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl 113 (206)
T PF14988_consen 39 QELVSRYAKQTSELQDQLLQKEKEQAKLQQELQAL-----KEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFL 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555688999999999999999999999999887 36678888889999999988887764433 366667
Q ss_pred HHHHhHHHHHHH
Q 001657 602 KQKHKSDEAAKR 613 (1036)
Q Consensus 602 K~K~K~E~~~~~ 613 (1036)
+.|..+|.++.+
T Consensus 114 ~EK~~LEke~~e 125 (206)
T PF14988_consen 114 QEKARLEKEASE 125 (206)
T ss_pred HHHHHHHHHHHH
Confidence 777777666644
No 189
>PRK05642 DNA replication initiation factor; Validated
Probab=87.12 E-value=0.28 Score=53.47 Aligned_cols=45 Identities=22% Similarity=0.508 Sum_probs=28.7
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhc---CC-CccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ---GY-NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~---G~-N~ti~aYGqTgSGKTyTm 98 (1036)
..|+||.-+.. + +.. +...+....+ ++ +..++-||++|+||||-+
T Consensus 14 ~~~tfdnF~~~--~-~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYPG--A-NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCcC--C-hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHH
Confidence 46899998832 2 222 3333433333 22 356889999999999998
No 190
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.01 E-value=36 Score=34.22 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 001657 753 QAALADELTIL 763 (1036)
Q Consensus 753 r~k~~~El~~L 763 (1036)
....+.++..|
T Consensus 30 ~~~~E~EI~sL 40 (143)
T PF12718_consen 30 NEQKEQEITSL 40 (143)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 191
>PRK08727 hypothetical protein; Validated
Probab=87.01 E-value=0.26 Score=53.68 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=27.0
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCC-ccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N-~ti~aYGqTgSGKTyTm 98 (1036)
..|+||.-+..+ + + .+. .+..+..|+. -.|+-||++||||||.+
T Consensus 14 ~~~~f~~f~~~~-~-n--~~~-----~~~~~~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIAAP-D-G--LLA-----QLQALAAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccCCc-H-H--HHH-----HHHHHHhccCCCeEEEECCCCCCHHHHH
Confidence 467899876332 2 1 111 1122222432 45999999999999998
No 192
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.87 E-value=0.21 Score=59.59 Aligned_cols=49 Identities=22% Similarity=0.391 Sum_probs=31.5
Q ss_pred ceeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 45 ~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
...|+||..+.. .+ +...|..+ ..++.+ ...||. +|-||++|+||||.+
T Consensus 99 ~~~~tFdnFv~g-~~-n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 99 NPDYTFENFVVG-PG-NSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCCcccccccC-Cc-hHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 357999987732 23 34444432 233332 123665 999999999999998
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.76 E-value=15 Score=42.89 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001657 539 ELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 539 ~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
+|+.+...++++++-+...+.++
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~ 387 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQL 387 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 33444555555555555444444
No 194
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=86.59 E-value=49 Score=41.33 Aligned_cols=65 Identities=23% Similarity=0.379 Sum_probs=39.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhccc----c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 497 QNTMDKELNELNKRLEQKESEMKLFGDI----D---TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 497 q~kl~~El~eL~k~Le~kE~~~~~~~~~----~---~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
-..|...++-||.+|.+.|...+..+.. + .+.+--.++.++.+.......|+.-.++|+..+++.
T Consensus 396 NaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 396 NAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQ 467 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Confidence 3467788899999999888766543311 1 223333356666666666666666666666655554
No 195
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=86.53 E-value=2.9 Score=49.42 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=17.7
Q ss_pred ccCcccCcccchhhhhhhccccccccccccc
Q 001657 946 TPGIVNGSVRESAAFVDQTRKMVPVGHLSMK 976 (1036)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1036)
+||-.-+.+-...+|.+ ..-.+|++.+++.
T Consensus 158 ~p~~~~~~~~~~~~~~~-g~~~~~~~~~~yq 187 (475)
T PRK13729 158 FPPQGSVAVPPPTAFYP-GNGVTPPPQVTYQ 187 (475)
T ss_pred cCcccccCCCCCCCcCC-CCCCCCCcccccc
Confidence 45434444556667776 4566777777554
No 196
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.23 E-value=54 Score=35.49 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (1036)
Q Consensus 605 ~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE 684 (1036)
..++.+.++|+.+.++|+.-...++-|....-.+|-.....++.++.|++ .++-.|++-|+|
T Consensus 55 ~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~------------------aikeql~kyiRe 116 (333)
T KOG1853|consen 55 DQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTH------------------AIKEQLRKYIRE 116 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHH
Confidence 33444444555555555544444444444444455555555555554443 344456677777
Q ss_pred HHHHHHHH
Q 001657 685 AAIATKRL 692 (1036)
Q Consensus 685 ~~a~~krL 692 (1036)
+..+|..|
T Consensus 117 LEQaNDdL 124 (333)
T KOG1853|consen 117 LEQANDDL 124 (333)
T ss_pred HHHhccHH
Confidence 77776655
No 197
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=86.16 E-value=1.4e+02 Score=40.09 Aligned_cols=37 Identities=27% Similarity=0.203 Sum_probs=25.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 729 LEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1036)
Q Consensus 729 l~~ELE~l~~l~E~~~~~~~q~e~r~k~~~El~~Lk~ 765 (1036)
++++++.+....+...-++.+.......++++.+.+.
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~ 552 (1294)
T KOG0962|consen 516 LDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKS 552 (1294)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6777777765666665666666666777777777665
No 198
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=86.13 E-value=0.73 Score=53.58 Aligned_cols=28 Identities=32% Similarity=0.652 Sum_probs=20.5
Q ss_pred hhHHHhhcCCCcc-EeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNAT-VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~t-i~aYGqTgSGKTyTm 98 (1036)
.++..++.|.-.+ ++.||+||+|||.|+
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3344555554444 999999999999988
No 199
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.95 E-value=9.4 Score=40.34 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001657 676 MVLQRKTEEAAIATKRLKELLE 697 (1036)
Q Consensus 676 ~vLqRK~eE~~a~~krLke~Le 697 (1036)
+++..|.+.+...++.|-+-+-
T Consensus 161 ~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 161 NMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 200
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.87 E-value=52 Score=35.02 Aligned_cols=143 Identities=19% Similarity=0.237 Sum_probs=80.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhH
Q 001657 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (1036)
Q Consensus 497 q~kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~ 576 (1036)
-+.|..++.++.+..+..+..|..+ ......|.+.+..++.|+..|...+...+.. +..-...
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei------------~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd-----K~~L~~~ 91 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEI------------SQENKRLSEPLKKAEEEVEELRKQLKNYEKD-----KQSLQNL 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 3456666777766666655555322 2445667777777777777777777765211 1111233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1036)
Q Consensus 577 ~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~ 656 (1036)
+.++..+++++.+|+-+.. -+++.+..++.|-..+...-...+.- =..+..--..-+++.+..|...
T Consensus 92 k~rl~~~ek~l~~Lk~e~e----------vL~qr~~kle~ErdeL~~kf~~~i~e---vqQk~~~kn~lLEkKl~~l~~~ 158 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHE----------VLEQRFEKLEQERDELYRKFESAIQE---VQQKTGLKNLLLEKKLQALSEQ 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666654333 23333444444443333333332221 1223334456678888889999
Q ss_pred hhhhHHHHHHHHH
Q 001657 657 GRKNEFERHKLEA 669 (1036)
Q Consensus 657 ~rK~e~Ei~~L~~ 669 (1036)
+.+++.++..+-+
T Consensus 159 lE~keaqL~evl~ 171 (201)
T PF13851_consen 159 LEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887766
No 201
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=85.82 E-value=65 Score=37.50 Aligned_cols=41 Identities=32% Similarity=0.390 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 722 EKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTI 762 (1036)
Q Consensus 722 ~~~~~~Wl~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~ 762 (1036)
..+++.||..--|+= .-..-.+-..+.|+...+..++.|.+
T Consensus 334 P~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 334 PLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 457999987554443 22333444556666666655555544
No 202
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=85.62 E-value=0.35 Score=49.43 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=22.9
Q ss_pred chhhHHHhhcC-CCccEeeeccCCCCcccccc
Q 001657 69 VAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 99 (1036)
Q Consensus 69 v~plV~~~l~G-~N~ti~aYGqTgSGKTyTm~ 99 (1036)
+..+++.+-.+ .+..++..|+||||||++|.
T Consensus 12 i~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 12 IARIINSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp HHHHHHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 44555555555 56777888999999999993
No 203
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.40 E-value=28 Score=37.89 Aligned_cols=55 Identities=24% Similarity=0.380 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLK 602 (1036)
Q Consensus 536 ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K 602 (1036)
+|.++......+++-+..|..+++.++ .-+..|.++.+++..|..+...|.+-++
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e------------~ee~~L~e~~kE~~~L~~Er~~h~eeLr 56 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLE------------NEEKCLEEYRKEMEELLQERMAHVEELR 56 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777877777662 1135566677666777666665554443
No 204
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.33 E-value=41 Score=33.25 Aligned_cols=46 Identities=26% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 648 KELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLK 693 (1036)
Q Consensus 648 kei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLk 693 (1036)
.++.+|+.+.......+...+.--..++..|.+.+.++..++..|.
T Consensus 73 ~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 73 QEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666655555553
No 205
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=85.26 E-value=1.1e+02 Score=38.10 Aligned_cols=14 Identities=14% Similarity=0.508 Sum_probs=8.3
Q ss_pred hhhhhhhhhhhccC
Q 001657 137 FIEILKEEVRDLLD 150 (1036)
Q Consensus 137 ~~EIynE~v~DLL~ 150 (1036)
||-.||+.++|++.
T Consensus 24 ~yA~~n~~f~d~f~ 37 (582)
T PF09731_consen 24 YYAKQNDNFRDFFE 37 (582)
T ss_pred HHhhcChHHHHHHH
Confidence 34446666666663
No 206
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.22 E-value=29 Score=34.97 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhHHHHHHHHH
Q 001657 650 LLKLKKEGRKNEFERHKLEA 669 (1036)
Q Consensus 650 i~qLk~~~rK~e~Ei~~L~~ 669 (1036)
..+...+.||++.|+.+|+.
T Consensus 128 ~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 128 KTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777666654
No 207
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.14 E-value=0.36 Score=56.36 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=30.8
Q ss_pred ceeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 45 ~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
...|+||..... .+ +...|. +...|.....+.--.||-||++|+||||.|
T Consensus 81 ~~~ytFdnFv~g-~~-N~~A~a--a~~~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 81 NPKYTFDNFVVG-PS-NRLAYA--AAKAVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCCchhheeeC-Cc-hHHHHH--HHHHHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 357999987743 33 232222 222222323334556889999999999999
No 208
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.09 E-value=0.4 Score=52.26 Aligned_cols=46 Identities=13% Similarity=0.353 Sum_probs=29.3
Q ss_pred ceeEEcceeeCCCCCCccccccccchhhHHHhh-cCCCccEeeeccCCCCccccc
Q 001657 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF-QGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 45 ~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l-~G~N~ti~aYGqTgSGKTyTm 98 (1036)
+..|+||..+.. . +...+. .+..+. ......++-||++|+||||.+
T Consensus 16 ~~~~~fd~f~~~--~-n~~a~~-----~l~~~~~~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 16 PDDETFASFYPG--D-NDSLLA-----ALQNALRQEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCcCCccccccC--c-cHHHHH-----HHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 356888877733 3 333433 233332 223357899999999999998
No 209
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.91 E-value=48 Score=42.17 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 530 RHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 530 k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
+..++.++..|..++....++...+.+++..+
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555555555555554
No 210
>PRK12377 putative replication protein; Provisional
Probab=84.83 E-value=0.38 Score=52.85 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=32.4
Q ss_pred eEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 47 ~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..+||........ +..++.. +..++..+..+. ..|+-||++|+||||.+
T Consensus 70 ~~tFdnf~~~~~~-~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 70 KCSFANYQVQNDG-QRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCcCCcccCChh-HHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHH
Confidence 4478875533222 3444443 556667666554 56888999999999998
No 211
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=84.80 E-value=1.1e+02 Score=37.86 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=63.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKEL 650 (1036)
Q Consensus 571 Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei 650 (1036)
+++...+-.++.|...|..=++-..+..++.+....+...-..|..-|+-..+. +.-|+..+.-.........+.+
T Consensus 398 k~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~eke----v~dLe~~l~~~~~~eq~yskQV 473 (786)
T PF05483_consen 398 KQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKE----VHDLEIQLTTIKESEQHYSKQV 473 (786)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHhhHHHHHHH
Confidence 344444445555555554444444444444444444444333333333333332 3344455555555566666667
Q ss_pred HHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 651 LKLKKEGRK---NEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1036)
Q Consensus 651 ~qLk~~~rK---~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~e 699 (1036)
.+|+.++.+ +-.|+..--.....+...+...+...+...+.+++++..-
T Consensus 474 eeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~ 525 (786)
T PF05483_consen 474 EELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNS 525 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 777766654 2223323233444455556666667666777776666543
No 212
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=84.75 E-value=0.36 Score=57.88 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=29.3
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..|+||..... .. +...|.. +..+...--..|| .+|-||++|+||||.+
T Consensus 117 ~~~tfd~fv~g-~~-n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 117 PKYTFDNFVVG-KS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCcccccccC-CC-cHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 57889885422 22 3334433 2333333222344 4888999999999998
No 213
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.52 E-value=14 Score=40.24 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 535 KKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 535 ~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
.||.+|+.++.+|.||+..=.=.|.++
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSl 44 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESL 44 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 567777777777777776655555555
No 214
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.36 E-value=0.44 Score=51.09 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=29.9
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..|+||.... + . +...+.. +-.-+..+....|+-||++||||||..
T Consensus 10 ~~~~~~~~~~-~-~-~~~~~~~----l~~~~~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA-G-G-NAELLAA----LRQLAAGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc-C-C-cHHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4578887773 2 2 2333332 222223566778999999999999998
No 215
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.99 E-value=50 Score=36.35 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001657 638 QFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1036)
Q Consensus 638 ~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~ 669 (1036)
+..........+..+|..+.+..+.++..|..
T Consensus 65 rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~e 96 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQELREAEAEIARLEE 96 (246)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555555555555555554
No 216
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.94 E-value=61 Score=37.15 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 001657 499 TMDKELNELNKRLEQKES 516 (1036)
Q Consensus 499 kl~~El~eL~k~Le~kE~ 516 (1036)
.|+..+..|+.+.+.+..
T Consensus 153 ~L~~~~~~L~~D~~~L~~ 170 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDK 170 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 217
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.85 E-value=80 Score=36.04 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001657 611 AKRLQAEIQSIKAQKVQL 628 (1036)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L 628 (1036)
+..+...|+.....+.++
T Consensus 234 l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 234 LQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 218
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=83.64 E-value=0.47 Score=59.31 Aligned_cols=93 Identities=25% Similarity=0.418 Sum_probs=56.2
Q ss_pred EEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccH--H--HHHHHHHHHHH
Q 001657 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLI--P--QVMNALFNKIE 123 (1036)
Q Consensus 48 F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Gii--p--r~~~~LF~~i~ 123 (1036)
|....-|.|.+. |..- +..++..+-.|.... ..+|.|||||||||..-......+-|| | .....|++.+.
T Consensus 2 f~~~~~~~~~~~-Q~~a----i~~l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 2 FKLHSPFQPAGD-QPKA----IAKLVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ceeccCCCCChH-HHHH----HHHHHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 444445767665 4433 345666666664333 378999999999984322211122222 1 24556777666
Q ss_pred hhcccceEEEEeehhhhhhhhhh
Q 001657 124 TLRHQMEFQLHVSFIEILKEEVR 146 (1036)
Q Consensus 124 ~~~~~~~~~v~vS~~EIynE~v~ 146 (1036)
..-+...+...||||..|.-+.|
T Consensus 76 ~f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 76 EFFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HhCCCCeEEEEeeecccCCcccc
Confidence 65555558889999999976643
No 219
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.55 E-value=66 Score=34.26 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001657 540 LEEEKRIVQQERDRLLAE 557 (1036)
Q Consensus 540 Le~ei~~lqkErd~Ll~~ 557 (1036)
|+.....++.||+.|...
T Consensus 112 L~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 112 LEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 220
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.34 E-value=1.4e+02 Score=37.86 Aligned_cols=100 Identities=20% Similarity=0.164 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCchH
Q 001657 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEK 723 (1036)
Q Consensus 644 ~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~~ 723 (1036)
.....|+.+|+.++..-..++..++..+......++-.+..+...+..+. +..+...+
T Consensus 362 ~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~le------k~~re~qe---------------- 419 (717)
T PF09730_consen 362 KVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLE------KSSREDQE---------------- 419 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhHH----------------
Confidence 34445566666666655555555555555555555555444444433332 21211111
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 724 SLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQV 766 (1036)
Q Consensus 724 ~~~~Wl~~ELE~l-~~l~E~~~~~~~q~e~r~k~~~El~~Lk~~ 766 (1036)
...=|..||-.+ ....|..+.+..-++.-.....+|+.|-..
T Consensus 420 -ri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHH 462 (717)
T PF09730_consen 420 -RISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHH 462 (717)
T ss_pred -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011166777777 566777777777777777788888888643
No 221
>PRK08116 hypothetical protein; Validated
Probab=83.33 E-value=0.41 Score=53.23 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=33.5
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhc--CCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~--G~N~ti~aYGqTgSGKTyTm 98 (1036)
..++||... .+.. +...|. .+...++++.. +.|..++-||++||||||.+
T Consensus 80 ~~~tFdnf~-~~~~-~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFL-FDKG-SEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred Hhcchhccc-CChH-HHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 457888755 3222 344444 35666666644 34556999999999999998
No 222
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.20 E-value=0.58 Score=45.26 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=20.6
Q ss_pred hhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 70 ~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..+...+.......|+.+|++|+|||+++
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 34444444434567889999999999877
No 223
>PRK06526 transposase; Provisional
Probab=83.16 E-value=0.48 Score=52.26 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.7
Q ss_pred EeeeccCCCCcccccc
Q 001657 84 VLAYGQTGSGKTYTMG 99 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm~ 99 (1036)
|+.||++|+||||.+.
T Consensus 101 lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 101 VVFLGPPGTGKTHLAI 116 (254)
T ss_pred EEEEeCCCCchHHHHH
Confidence 8899999999999983
No 224
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.11 E-value=68 Score=39.08 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=52.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------
Q 001657 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA------- 669 (1036)
Q Consensus 597 ~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~------- 669 (1036)
..-|+|.+...|.++..-++.|+++.+.+|..+- .|--.+...-..-.-|+++|+++..-+..|+-+|..
T Consensus 190 ltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~---~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~ 266 (861)
T KOG1899|consen 190 LTALEKEQNETEKKLRLSENLMQEVNQSKVGEVV---QERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLM 266 (861)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 3456666677777777777777777777666421 111111111112223445555555544444433332
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 670 ----LNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1036)
Q Consensus 670 ----~~~~q~~vLqRK~eE~~a~~krLke~Le~e 699 (1036)
.+..+.+-|+.-++++.+++..-....|..
T Consensus 267 ~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~l 300 (861)
T KOG1899|consen 267 ADGEHKSLRDNTLKNALESLMRANEQKDRFIESL 300 (861)
T ss_pred hcccchhhHHHHHHHHHHHHHhhchhhhhHHHHH
Confidence 233445567777777777775544444443
No 225
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.10 E-value=0.44 Score=57.05 Aligned_cols=48 Identities=27% Similarity=0.389 Sum_probs=29.7
Q ss_pred eEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 47 ~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.|+||..+.. .+ +...|.. +..++..--..|| .+|-||++|+||||.|
T Consensus 111 ~~tFdnFv~g-~~-n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVIG-SS-NEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccCC-Cc-HHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 5999997743 33 3334432 3333332111244 4889999999999998
No 226
>PF13245 AAA_19: Part of AAA domain
Probab=82.89 E-value=0.64 Score=41.34 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.5
Q ss_pred HHHhhcCCCccEeeeccCCCCccccc
Q 001657 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 73 V~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
|...+. -+..++..|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 444455 3344555899999999998
No 227
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=82.68 E-value=51 Score=38.82 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=73.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001657 605 HKSDEAAKRLQAEIQSIKAQKVQL---------QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQK 675 (1036)
Q Consensus 605 ~K~E~~~~~L~~ei~~lk~~kv~L---------~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~ 675 (1036)
...+.+|..|-+-+..++..---| .+.|-.+...|-.....++.....+...+.+.+.-+..++.......
T Consensus 291 ~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~ 370 (388)
T PF04912_consen 291 AEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENM 370 (388)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777776654433 66777999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001657 676 MVLQRKTEEAAIATKRL 692 (1036)
Q Consensus 676 ~vLqRK~eE~~a~~krL 692 (1036)
.++...++.+..++..|
T Consensus 371 ~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 371 ETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 88999998888887766
No 228
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=82.65 E-value=0.86 Score=52.63 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=25.2
Q ss_pred cccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 66 ~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
+....|.+..++.--.+.|+..|+||||||+||
T Consensus 107 ~lg~~~~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 107 ELGLPPVLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred HcCCCHHHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 333446666666555688999999999999999
No 229
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=82.48 E-value=1.3 Score=49.84 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 001657 794 RMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIK 873 (1036)
Q Consensus 794 r~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~ 873 (1036)
+.+++..|+.........+..|...+.+++.+.. +...++++.+..|.-+.. .+..++..+.++.
T Consensus 33 I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~--------~l~~sl~~~~s~L~sLss-------tV~~lq~Sl~~ls 97 (326)
T PF04582_consen 33 IRERLSALESSVASLSDSVSSLSSTISDLSSDLQ--------DLASSLADMTSELNSLSS-------TVTSLQSSLSSLS 97 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 3455556666666666666666666666653221 344566666666666655 4455556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcCC-CCCccccCccccccccCccc
Q 001657 874 EQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSGP-LSPVSLPAPKQLKFTPGIVN 951 (1036)
Q Consensus 874 ~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~ 951 (1036)
..+..+...+...+.....|.......+..++.|-.+.+++.-++.+++..+..+... -+|.++.+| |+..-|++-
T Consensus 98 ssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s~~l~f~~P--L~~~~g~vS 174 (326)
T PF04582_consen 98 SSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSSSPLTFSAP--LKLDDGVVS 174 (326)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-EE-TT--EEECTTEEE
T ss_pred hhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCCCCceecCC--eEecCCEEE
Confidence 6666677777777777788888888888999999999999999999999999888654 345667666 555556554
No 230
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.43 E-value=1.7e+02 Score=38.07 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=48.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001657 599 ELLKQKHKSDEAAKRLQAEIQSIKAQKVQL----QNKIKQE-AEQFRQWK--ASREKELLKLKKEGRKNEFERHKLEALN 671 (1036)
Q Consensus 599 ~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L----~rkmk~e-~~~~~~~~--~~~ekei~qLk~~~rK~e~Ei~~L~~~~ 671 (1036)
.|...++++...+..+=.+..++..+.+.. ..++++. ....-.|. +....-...++...++.+.-+..+++..
T Consensus 703 ~l~~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea~~~i~~~e~~i~~~~~~~ 782 (1072)
T KOG0979|consen 703 DLDRQEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEAERKIEKLEDNISFLEARE 782 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555566655555555555555554443 4444441 11122222 2222233345556666666677777766
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001657 672 QRQKMVLQRKTEEAAIAT 689 (1036)
Q Consensus 672 ~~q~~vLqRK~eE~~a~~ 689 (1036)
+.-+..++-+.++|++..
T Consensus 783 ~~lk~a~~~~k~~a~~~~ 800 (1072)
T KOG0979|consen 783 DLLKTALEDKKKEAAEKR 800 (1072)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 666666777777776655
No 231
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.41 E-value=0.89 Score=49.51 Aligned_cols=44 Identities=34% Similarity=0.453 Sum_probs=32.4
Q ss_pred cchhhHHHhhcCCCccEeeeccCCCCccccccc--CCCCCCccccH
Q 001657 68 CVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGT--GLREGFQTGLI 111 (1036)
Q Consensus 68 ~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm~G--~~~~~~~~Gii 111 (1036)
-+.+++.++.-..-+.|+..|+|||||++||-. ++.+....|=|
T Consensus 114 ~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHI 159 (375)
T COG5008 114 KLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159 (375)
T ss_pred CCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCce
Confidence 366788888888889999999999999999821 23344444533
No 232
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.32 E-value=39 Score=35.39 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001657 867 TEIKEIKEQLNDLVALLKQSE 887 (1036)
Q Consensus 867 ~k~~E~~~~~~el~~~~~~~~ 887 (1036)
.+++.+...+.++.+..+.++
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 233
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.01 E-value=0.64 Score=50.09 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=30.0
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..|+||.+++. . ...++. .+..++.. .+.+..|+-||++||||||.+
T Consensus 13 ~~~~~d~f~~~--~-~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG--E-NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC--C-cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 56899998832 2 223322 23333331 244567999999999999988
No 234
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=81.99 E-value=0.64 Score=54.91 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=28.5
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..|+||.... +.. +...|.. +..+...--..|| .++-||++|+||||.+
T Consensus 105 ~~~tfd~fi~-g~~-n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 105 PKYTFDNFVV-GKS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCccccccc-CCc-HHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 5789998442 222 3333332 2333333111234 4788999999999998
No 235
>PRK07952 DNA replication protein DnaC; Validated
Probab=81.46 E-value=0.58 Score=51.31 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=30.2
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
...+||..... ...+..++.. +...++.+..|+ ..++-||++|+||||.+
T Consensus 67 ~~~tFdnf~~~-~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRVE-CEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccCC-CchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHH
Confidence 45678875422 2223334433 334444443443 36889999999999998
No 236
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.42 E-value=1.7e+02 Score=37.58 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 616 AEIQSIKAQKVQLQNKIKQEAEQFRQ---WKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRL 692 (1036)
Q Consensus 616 ~ei~~lk~~kv~L~rkmk~e~~~~~~---~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krL 692 (1036)
..|+.++.+..++..++.+-..++.. .......++..|+.+. ..|+.++......+...++...+.+.+.+..+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i---~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~ 364 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQI---RSELQKITKSLLMQADAAQARESQLVSDVNQL 364 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444443333322 2344555555565543 33445554444444445555555554444444
Q ss_pred H
Q 001657 693 K 693 (1036)
Q Consensus 693 k 693 (1036)
+
T Consensus 365 ~ 365 (754)
T TIGR01005 365 K 365 (754)
T ss_pred H
Confidence 3
No 237
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.35 E-value=1.6e+02 Score=37.01 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001657 795 MERIASLENMLNMSSKALVEMASQLSEAE 823 (1036)
Q Consensus 795 ~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e 823 (1036)
.+.++.|..++.....++.+.-+.+.++.
T Consensus 225 ~etl~~L~~~v~~l~~~k~qr~~kl~~l~ 253 (660)
T KOG4302|consen 225 DETLDRLDKMVKKLKEEKKQRLQKLQDLR 253 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555555555553
No 238
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.35 E-value=1.3e+02 Score=36.16 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001657 677 VLQRKTEEAAIATKRLKELLEA 698 (1036)
Q Consensus 677 vLqRK~eE~~a~~krLke~Le~ 698 (1036)
.+...+.++.+.+..++..++.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555543
No 239
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.18 E-value=0.76 Score=53.84 Aligned_cols=20 Identities=45% Similarity=0.675 Sum_probs=17.2
Q ss_pred CCCccEeeeccCCCCccccc
Q 001657 79 GYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 79 G~N~ti~aYGqTgSGKTyTm 98 (1036)
+.+..++-||++|+|||+++
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 45567899999999999988
No 240
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.14 E-value=18 Score=41.32 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 537 IMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 537 i~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
+..|+.++..+.+|++....-+..+
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l 35 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKL 35 (314)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666655554
No 241
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.09 E-value=1.4e+02 Score=36.20 Aligned_cols=110 Identities=22% Similarity=0.251 Sum_probs=55.5
Q ss_pred hhhhhhhHHHHHHHHHhhhhccCCCCCcccCCCChhhhhhh-ccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHH----
Q 001657 288 IHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQ-DSLGGNSKTVMIACISPADINAEESLNTLKYANR---- 362 (1036)
Q Consensus 288 ~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrlLq-dsLgGns~t~mI~~vSP~~~~~~eTl~TL~fa~r---- 362 (1036)
-.|+.||..|.++...++.- =.+-|-.+-. -+.|..+-|.+ ++|... ++ .|.|-.|
T Consensus 213 ~c~~~sl~~l~~~~~k~a~f-----------~~nnld~~~~~~~y~~~~~~~~---~~~~~~---~~--~~~~~~~a~~~ 273 (518)
T PF10212_consen 213 ECILSSLVSLTNGTGKIAAF-----------FSNNLDFFTSSSGYGPKGATTF---TNPLSA---EC--MLQYKKRAAAY 273 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHH-----------HhcchHHhhcccccCCCccccc---CCccch---HH--HHHHHHHHHHH
Confidence 35777787877777766642 1222222221 12333344433 355321 23 3555444
Q ss_pred hhcccCccccccccchHHHHHHHHHH--HHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001657 363 ARNIQNKPVVNRDLISSDMQKLRQQL--KYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLC 425 (1036)
Q Consensus 363 ar~Ik~kpvvn~d~~~~ei~~Lr~ei--~~Lq~eL~~~~~~~~~~e~~~L~eki~~L~~e~~~L~ 425 (1036)
+..+ .+|...+.|....+..-+-=. ..-++-| ...++...++|+.|++|++...
T Consensus 274 ~~~~-~~p~~~svpy~~a~~n~ril~sstes~e~L--------~qqV~qs~EKIa~LEqEKEHw~ 329 (518)
T PF10212_consen 274 MSSL-KKPCPESVPYEEALANRRILLSSTESREGL--------AQQVQQSQEKIAKLEQEKEHWM 329 (518)
T ss_pred HHHh-cCCCCccCChHHHHhhhHHHhhhHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 477777777766554321100 0111111 3557777788888888887644
No 242
>PRK10436 hypothetical protein; Provisional
Probab=80.92 E-value=0.71 Score=55.26 Aligned_cols=28 Identities=36% Similarity=0.382 Sum_probs=23.4
Q ss_pred hHHHhhcCCCccEeeeccCCCCcccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm~ 99 (1036)
.+..++..-++.|+..|+||||||+||+
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3555666788999999999999999994
No 243
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.81 E-value=1.6e+02 Score=36.74 Aligned_cols=61 Identities=26% Similarity=0.196 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 001657 841 MGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQR----KELVKQQRMRE 901 (1036)
Q Consensus 841 ~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~----~el~~~l~e~E 901 (1036)
+..++...+.+-+.....++.+.+...++...+.....+...+..+++++ +.+..|-++.+
T Consensus 435 reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~ 499 (716)
T KOG4593|consen 435 REQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESE 499 (716)
T ss_pred HHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666655556666666666655555555544444444333 33444444444
No 244
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=80.45 E-value=0.7 Score=53.52 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=20.5
Q ss_pred hHHHhhc-CCCccEeeeccCCCCccccc
Q 001657 72 LVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 72 lV~~~l~-G~N~ti~aYGqTgSGKTyTm 98 (1036)
.+..++. +....++.||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444443 45678999999999999987
No 245
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=80.36 E-value=0.8 Score=55.30 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=23.1
Q ss_pred hHHHhhcCCCccEeeeccCCCCcccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm~ 99 (1036)
.+..++..-++.|+..|+||||||+||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455667778889999999999999994
No 246
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=80.24 E-value=0.74 Score=56.75 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=23.7
Q ss_pred hHHHhhcCCCccEeeeccCCCCcccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm~ 99 (1036)
.+..++..-++.|+..|+||||||+||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4556667788999999999999999994
No 247
>PLN02939 transferase, transferring glycosyl groups
Probab=80.08 E-value=2.1e+02 Score=37.64 Aligned_cols=140 Identities=20% Similarity=0.248 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001657 537 IMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKMQ----DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDE 609 (1036)
Q Consensus 537 i~~Le~ei~~lqkErd~Ll~~l~~~~~~---~~~~~~Kl~----~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~ 609 (1036)
+.+-++-+..|+|||--|.+.+..++.. ......|+. +..-.+.+.|+.-|+.+....+...-++-....+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (977)
T PLN02939 252 VAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRD 331 (977)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4555666677777777776666665321 111222222 223445666666666666555555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKAS-REKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIA 688 (1036)
Q Consensus 610 ~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~-~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~ 688 (1036)
+++.|++.+.+-...|. +....+ +...+.-|++.+++...||+. +..+.+--++|.+.-
T Consensus 332 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 391 (977)
T PLN02939 332 KVDKLEASLKEANVSKF-------------SSYKVELLQQKLKLLEERLQASDHEIHS-------YIQLYQESIKEFQDT 391 (977)
T ss_pred HHHHHHHHHHHhhHhhh-------------hHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHH
Confidence 66666666654433332 121222 112333355555555555543 344455667777777
Q ss_pred HHHHHHHH
Q 001657 689 TKRLKELL 696 (1036)
Q Consensus 689 ~krLke~L 696 (1036)
...|+++-
T Consensus 392 ~~~~~~~~ 399 (977)
T PLN02939 392 LSKLKEES 399 (977)
T ss_pred HHHHHhhh
Confidence 77776643
No 248
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.87 E-value=0.72 Score=44.09 Aligned_cols=15 Identities=53% Similarity=0.618 Sum_probs=13.8
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 678999999999999
No 249
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=79.84 E-value=0.99 Score=50.06 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=23.8
Q ss_pred ccchhhHHHhhcCC---CccEeeeccCCCCccccc
Q 001657 67 ECVAPLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 67 ~~v~plV~~~l~G~---N~ti~aYGqTgSGKTyTm 98 (1036)
....+.+..++... .+.|+..|+||||||.+|
T Consensus 110 ~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 110 GSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred hhhHHHHHHHHhhccccceEEEEECCCccccchHH
Confidence 33445556666555 677888899999999999
No 250
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=79.82 E-value=0.71 Score=48.87 Aligned_cols=18 Identities=50% Similarity=0.695 Sum_probs=16.2
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
++.|+-.|+||||||+|+
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367889999999999998
No 251
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=79.67 E-value=37 Score=42.35 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHH
Q 001657 350 AEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAEL 395 (1036)
Q Consensus 350 ~~eTl~TL~fa~rar~Ik~kpvvn~d~~~~ei~~Lr~ei~~Lq~eL 395 (1036)
++.+++.|-+.....+|++-.-+-.-+.-.|...||+++..|-.+|
T Consensus 365 vE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqql 410 (861)
T PF15254_consen 365 VEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQL 410 (861)
T ss_pred HHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3444555555555555555444433344444445555554444444
No 252
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.65 E-value=22 Score=38.05 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001657 577 TLKLKALEAQILELKKKQ 594 (1036)
Q Consensus 577 ~~~l~~LE~el~~L~~e~ 594 (1036)
+.++..+++++.+|+.+.
T Consensus 92 ~~rlp~le~el~~l~~~l 109 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKL 109 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666666333
No 253
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.57 E-value=1.4e+02 Score=36.48 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001657 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1036)
Q Consensus 605 ~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~ 668 (1036)
..+|.+--+|-.||.++|=..+- +|||...-++++|+.+.+|+.+.
T Consensus 170 tsLETqKlDLmaevSeLKLklta------------------lEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTA------------------LEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHH------------------HHHHhhhHHHHHHhHHHHHHHHH
Confidence 44555555666666666554444 55666666677777777766655
No 254
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=79.52 E-value=0.68 Score=44.83 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=13.3
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
+.+++.||++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467899999999999988
No 255
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=79.06 E-value=1 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.8
Q ss_pred HHHhhcCCCccEeeeccCCCCccccc
Q 001657 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 73 V~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
+..++.--++.|+..|+||||||+||
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHH
Confidence 33444445789999999999999999
No 256
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=79.04 E-value=1 Score=52.51 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=20.7
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
++++.+.. .++.|+..|+||||||+||
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 34444443 5677889999999999999
No 257
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=78.53 E-value=1.2e+02 Score=37.05 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=23.2
Q ss_pred CcceeeecccccceeeeeecccCcchhhhhhhccchhhhccCCCchh
Q 001657 985 GKLWRWKRSHHQWLLQFKWKWQKPWKLSEWIKHSDETIMKSRPRPQV 1031 (1036)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1036)
..+..+-++||- . ..|..+--||-+-...+...||..+.
T Consensus 391 ~~V~~aI~~HH~-~-------~~~~~~~a~IV~~AD~lsa~rpgar~ 429 (514)
T TIGR03319 391 PEVVNAIAAHHG-D-------VEPTSIEAVLVAAADALSAARPGARR 429 (514)
T ss_pred HHHHHHHHHhCC-C-------CCCCCHHHHHHHHHHHhcCCCCCCcc
Confidence 345555667773 1 14555666666666667777776553
No 258
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.33 E-value=74 Score=35.02 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=8.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 001657 601 LKQKHKSDEAAKRLQAEIQSIKA 623 (1036)
Q Consensus 601 ~K~K~K~E~~~~~L~~ei~~lk~ 623 (1036)
.+.+..++.++..+..+|..|..
T Consensus 74 ~eEk~~Le~e~~e~~~~i~~l~e 96 (246)
T PF00769_consen 74 EEEKEQLEQELREAEAEIARLEE 96 (246)
T ss_dssp -------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666555554443
No 259
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=78.29 E-value=0.86 Score=49.14 Aligned_cols=18 Identities=44% Similarity=0.759 Sum_probs=15.1
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
+.-+..+|.||||||||+
T Consensus 23 ~~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV 40 (229)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 345667899999999999
No 260
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.11 E-value=66 Score=33.89 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 532 HFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 532 ~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
....++..|..++..+..+...|...++..
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666655
No 261
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=77.99 E-value=0.89 Score=43.41 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.7
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
+..++-+|++|||||+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 346788999999999998
No 262
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=77.57 E-value=1.2 Score=45.10 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=20.0
Q ss_pred hHHHhhcCCCccEeeeccCCCCccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
++..+..|.| ++..|+||||||+..
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHH
Confidence 4555666766 788999999999998
No 263
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=77.54 E-value=1.2 Score=47.10 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=22.0
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..|..++.+.+..++..|+.||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 4566677666666677899999999998
No 264
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=77.14 E-value=29 Score=29.65 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=31.9
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 848 LQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEA 888 (1036)
Q Consensus 848 l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~ 888 (1036)
|.++.......++.|++.+.+..++..++..|..++..++.
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666777777889999999999988888888877766553
No 265
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=77.13 E-value=2e+02 Score=35.79 Aligned_cols=29 Identities=24% Similarity=0.152 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 670 LNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1036)
Q Consensus 670 ~~~~q~~vLqRK~eE~~a~~krLke~Le~ 698 (1036)
....+++--..++.++.+.++.|.+.+..
T Consensus 368 ~v~~Er~~~~~~l~~~~~~~~~le~~~~~ 396 (582)
T PF09731_consen 368 KVEQERNGRLAKLAELNSRLKALEEALDA 396 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666655554
No 266
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.51 E-value=37 Score=36.28 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 532 HFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (1036)
Q Consensus 532 ~~e~ki~~Le~ei~~lqkErd~Ll~~l~~ 560 (1036)
.+.+++...+..+..|+.+.+.|.+++..
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666555555543
No 267
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=76.33 E-value=77 Score=35.78 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 649 ELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1036)
Q Consensus 649 ei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~e 699 (1036)
++..|+.-.++.+.|-+.++...+.-......|.||++..+++|.|++.-.
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layq 178 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQ 178 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 344466666666666666666666666667788889999999998877643
No 268
>PRK06835 DNA replication protein DnaC; Validated
Probab=76.16 E-value=1.3 Score=50.70 Aligned_cols=28 Identities=29% Similarity=0.587 Sum_probs=21.8
Q ss_pred hhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 70 ~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
...|+++..+. ..|+-||++|+||||.+
T Consensus 173 ~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 173 KNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 34666665544 66999999999999988
No 269
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.96 E-value=44 Score=40.73 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHHHHhhcccceEEEEeehhh
Q 001657 109 GLIPQVMNALFNKIETLRHQMEFQLHVSFIE 139 (1036)
Q Consensus 109 Giipr~~~~LF~~i~~~~~~~~~~v~vS~~E 139 (1036)
|.|.++...|=..+....-+++..|+=+|..
T Consensus 164 ~av~~~~reIee~L~~agldyDl~vr~~~gG 194 (652)
T COG2433 164 GAVKRVVREIEEKLDEAGLDYDLEVRESYGG 194 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeccCc
Confidence 6677777766666665444444444444433
No 270
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.92 E-value=98 Score=37.91 Aligned_cols=56 Identities=16% Similarity=0.354 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001657 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKL 667 (1036)
Q Consensus 611 ~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L 667 (1036)
+..++.+|+.++.....+.+.++.+..+-++ ...++++|..|+++++.+...+..|
T Consensus 445 ~ee~k~eie~L~~~l~~~~r~~~~~~~~~re-i~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 445 LEELKREIEKLESELERFRREVRDKVRKDRE-IRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433222222 2234444444444444444443333
No 271
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.61 E-value=1.1e+02 Score=33.65 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=20.7
Q ss_pred hhccccccccccccchhhccCCCCc-ceeeecccccc
Q 001657 962 DQTRKMVPVGHLSMKKLATVGQPGK-LWRWKRSHHQW 997 (1036)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 997 (1036)
|+.-..|.+=.+-.-.+....-+|+ .|.|.+...+|
T Consensus 178 dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~~~~~~W 214 (251)
T PF11932_consen 178 DGEERQVDFLRLGRVALYYQTLDGSQAGVWDPATGQW 214 (251)
T ss_pred CCeEEEEEEEeecchhheeECCCccceeeecCCCCCC
Confidence 4444444443333333444445666 89999999876
No 272
>PF14992 TMCO5: TMCO5 family
Probab=75.57 E-value=1.4e+02 Score=33.32 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 001657 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKM 572 (1036)
Q Consensus 534 e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl 572 (1036)
+.-+.+|+.+...|+++-+.+-..+..+..+.+++..++
T Consensus 62 e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 62 ETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 455677888888888888777666666644444444444
No 273
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=75.33 E-value=1.8e+02 Score=34.55 Aligned_cols=93 Identities=10% Similarity=0.115 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-cHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhh
Q 001657 500 MDKELNELNKRLEQKESEMKLFGDI-DTEALR---HHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKM 572 (1036)
Q Consensus 500 l~~El~eL~k~Le~kE~~~~~~~~~-~~~~~k---~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~---~~~~~~Kl 572 (1036)
++.++.++..+|+..|..+..+... ...... .....++..|+.++...+.++............. .+-.....
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPI 255 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChH
Confidence 4566777777777777766555311 000000 0122567777777777766665555544322100 00001111
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001657 573 QDGHTLKLKALEAQILELKK 592 (1036)
Q Consensus 573 ~~~~~~~l~~LE~el~~L~~ 592 (1036)
-...+.++.+++.++..|..
T Consensus 256 i~~l~~~l~~le~~l~~l~~ 275 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQ 275 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22445666666666666643
No 274
>PF12846 AAA_10: AAA-like domain
Probab=75.31 E-value=1.1 Score=49.74 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=16.2
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
|..++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 567889999999999998
No 275
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.28 E-value=1.4 Score=48.84 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=21.6
Q ss_pred hHHHhhcCCCccEeeeccCCCCccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.+..++..-.+.|+-.|+||||||+||
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 445566656677888999999999999
No 276
>PRK08939 primosomal protein DnaI; Reviewed
Probab=75.16 E-value=0.89 Score=51.61 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=29.1
Q ss_pred EEcceeeCCCCCCccccccccchhhHHHhhcC-CCccEeeeccCCCCcccccc
Q 001657 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 99 (1036)
Q Consensus 48 F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G-~N~ti~aYGqTgSGKTyTm~ 99 (1036)
.+||.+-..+. ....++.. +...++....| ....|+-||++|+||||.+.
T Consensus 124 atf~~~~~~~~-~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDR-DRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCCh-HHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 45555432221 23344442 34455554433 23469999999999999993
No 277
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.08 E-value=25 Score=40.82 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHH
Q 001657 841 MGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRS 920 (1036)
Q Consensus 841 ~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~ 920 (1036)
+++++.-|+++...... .+-...++-+=+..++..+....+..+.++.++...+.++-.-|+.+++.-+.++.+|+.
T Consensus 236 ~~~~~~~L~kl~~~i~~---~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 236 LPETKSQLDKLQQDISK---TLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34555556666665555 555666666666667777777777777777777777777777777777777777777888
Q ss_pred HHHHHhhhcCCC
Q 001657 921 SKHFADDMSGPL 932 (1036)
Q Consensus 921 ~k~~~~e~~~~~ 932 (1036)
+|..++|=+.-+
T Consensus 313 vK~emeerg~~m 324 (359)
T PF10498_consen 313 VKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHhcCCC
Confidence 777777766543
No 278
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=74.69 E-value=1.2e+02 Score=34.40 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 001657 541 EEEKRIV 547 (1036)
Q Consensus 541 e~ei~~l 547 (1036)
+.+|+++
T Consensus 74 q~kirk~ 80 (401)
T PF06785_consen 74 QTKIRKI 80 (401)
T ss_pred HHHHHHH
Confidence 3344443
No 279
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=74.10 E-value=2.5 Score=46.14 Aligned_cols=46 Identities=26% Similarity=0.479 Sum_probs=28.8
Q ss_pred eEEcceeeCCCCCCccccccccchhhHHHhhcCCCcc-EeeeccCCCCccccc
Q 001657 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT-VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 47 ~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~t-i~aYGqTgSGKTyTm 98 (1036)
...+|...+-+ .+...+.. -...++.|..+- |+.||..|+|||.++
T Consensus 23 ~~~l~~L~Gie-~Qk~~l~~-----Nt~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 23 PIRLDDLIGIE-RQKEALIE-----NTEQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCCHHHhcCHH-HHHHHHHH-----HHHHHHcCCCCcceEEecCCCCCHHHHH
Confidence 44566666553 22222222 235677777553 677999999999887
No 280
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=73.55 E-value=1.4 Score=46.81 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=21.9
Q ss_pred hhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 70 ~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..+...+..|.+.+++.||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 44555555677899999999999999988
No 281
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.34 E-value=3.5 Score=52.34 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=20.8
Q ss_pred hhHHHhhc--CCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~--G~N~ti~aYGqTgSGKTyTm 98 (1036)
.++..++. |-+.+||.||++|+|||.|+
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 34444443 44567889999999999998
No 282
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=73.17 E-value=4.2 Score=44.49 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=13.8
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
|...|++|+|||.++
T Consensus 29 i~vvG~~~~GKSt~l 43 (240)
T smart00053 29 IAVVGGQSAGKSSVL 43 (240)
T ss_pred EEEEcCCCccHHHHH
Confidence 678899999999998
No 283
>PRK08181 transposase; Validated
Probab=73.14 E-value=1.4 Score=49.07 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=16.7
Q ss_pred cCCCccEeeeccCCCCcccccc
Q 001657 78 QGYNATVLAYGQTGSGKTYTMG 99 (1036)
Q Consensus 78 ~G~N~ti~aYGqTgSGKTyTm~ 99 (1036)
.|.| |+-||++|+||||.+.
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAA 124 (269)
T ss_pred cCce--EEEEecCCCcHHHHHH
Confidence 4555 8999999999999983
No 284
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=72.53 E-value=2.3 Score=52.53 Aligned_cols=19 Identities=47% Similarity=0.665 Sum_probs=16.4
Q ss_pred CCccEeeeccCCCCccccc
Q 001657 80 YNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 80 ~N~ti~aYGqTgSGKTyTm 98 (1036)
-|-.|+.+|+||||||+-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 4667888899999999987
No 285
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=72.47 E-value=1.4 Score=46.71 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.3
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4677899999999998
No 286
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=72.37 E-value=1.8 Score=49.05 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=21.2
Q ss_pred hhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 70 ~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..++..++.+ ...|+..|+||||||++|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455555554 467888899999999998
No 287
>PRK12704 phosphodiesterase; Provisional
Probab=72.01 E-value=1.9e+02 Score=35.49 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=11.4
Q ss_pred ccccceeeeeecccCcchhhhhhhc
Q 001657 993 SHHQWLLQFKWKWQKPWKLSEWIKH 1017 (1036)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1017 (1036)
+|-.+-..+-.+|.-|..+...|.+
T Consensus 381 ~H~~iGa~il~~~~~~~~v~~aI~~ 405 (520)
T PRK12704 381 SHVEIGAELAKKYKESPVVINAIAA 405 (520)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3444333333345555555555543
No 288
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=71.84 E-value=1.9 Score=51.57 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=30.3
Q ss_pred ceeEEcceeeCCCCCCccccccccchhhHHHh--hcC--CCccEeeeccCCCCccccc
Q 001657 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGL--FQG--YNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 45 ~~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~--l~G--~N~ti~aYGqTgSGKTyTm 98 (1036)
+..|+||..+.. .+ +...|. .+..+.... ..| || .+|-||++|+||||.+
T Consensus 105 ~~~~tFdnFv~g-~~-N~~a~~-~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl 158 (445)
T PRK12422 105 DPLMTFANFLVT-PE-NDLPHR-ILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLM 158 (445)
T ss_pred CccccccceeeC-Cc-HHHHHH-HHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHH
Confidence 357999987743 23 333333 233333322 223 44 3678999999999998
No 289
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.75 E-value=59 Score=30.81 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001657 595 ESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQ 674 (1036)
Q Consensus 595 ~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q 674 (1036)
++...+...+..++.++..|+.+|+..|..+-. | .+...++.......+.|
T Consensus 2 ee~~~l~as~~el~n~La~Le~slE~~K~S~~e-------------------------L----~kqkd~L~~~l~~L~~q 52 (107)
T PF09304_consen 2 EEKEALEASQNELQNRLASLERSLEDEKTSQGE-------------------------L----AKQKDQLRNALQSLQAQ 52 (107)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH-------------------------H----HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH-------------------------H----HHhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 001657 675 KMVLQRKTEEAAIATKRLKELLEARKSSARENS 707 (1036)
Q Consensus 675 ~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e 707 (1036)
.......+.|+++.+.++.-.++.+|.++-+.+
T Consensus 53 ~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~ 85 (107)
T PF09304_consen 53 NASRNQRIAELQAKIDEARRNLEDEKQAKLELE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 290
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.61 E-value=1e+02 Score=30.03 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHH
Q 001657 798 IASLENMLNMSSKALVEMASQLSEA 822 (1036)
Q Consensus 798 i~~Lq~~~~~~~~~~~~l~~ql~~~ 822 (1036)
+..|+..+...+.++..++.++..+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 291
>PRK06921 hypothetical protein; Provisional
Probab=71.43 E-value=1.5 Score=48.84 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=16.5
Q ss_pred CCccEeeeccCCCCccccc
Q 001657 80 YNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 80 ~N~ti~aYGqTgSGKTyTm 98 (1036)
....|+-||++|+||||.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3456889999999999998
No 292
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=71.20 E-value=1.3e+02 Score=31.15 Aligned_cols=77 Identities=29% Similarity=0.409 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001657 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQA 616 (1036)
Q Consensus 537 i~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ 616 (1036)
+..|..+...|+.|.+.|.+++.. .+.+++.+.+--+..-...+.+.....+ .++.-...|.+..+..|..
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~~-------ei~~l~a~~klD~n~eK~~~r~e~~~~~--~ki~e~~~ki~~ei~~lr~ 145 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELRE-------EINKLRAEVKLDLNLEKGRIREEQAKQE--LKIQELNNKIDTEIANLRT 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555432 2334433333222222222222222222 2244455566666667777
Q ss_pred HHHHHH
Q 001657 617 EIQSIK 622 (1036)
Q Consensus 617 ei~~lk 622 (1036)
+|+..|
T Consensus 146 ~iE~~K 151 (177)
T PF07798_consen 146 EIESLK 151 (177)
T ss_pred HHHHHH
Confidence 766533
No 293
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.97 E-value=93 Score=33.90 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001657 619 QSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFER 664 (1036)
Q Consensus 619 ~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei 664 (1036)
...+..+++.+|.+..|... ++..|.+++.+-.+....+
T Consensus 45 ~~Er~~h~eeLrqI~~DIn~-------lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 45 LQERMAHVEELRQINQDINT-------LENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33344445545555444333 4444444444444444433
No 294
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=70.79 E-value=1.7 Score=41.53 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.1
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999886
No 295
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=70.71 E-value=1.9e+02 Score=32.57 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001657 588 LELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKL 667 (1036)
Q Consensus 588 ~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L 667 (1036)
..|......+.+-...|+.+|-.+..-.+|. +.|+-+|..+....+....-+...+...+.+...-+.+++..
T Consensus 98 sRLaaAi~d~dqsq~skrdlelafqr~rdEw-------~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~t 170 (305)
T PF14915_consen 98 SRLAAAIQDHDQSQTSKRDLELAFQRARDEW-------VRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHT 170 (305)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHhhHH-------HHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666665555555554 455666777766666655555555554555554455555444
Q ss_pred H
Q 001657 668 E 668 (1036)
Q Consensus 668 ~ 668 (1036)
.
T Consensus 171 r 171 (305)
T PF14915_consen 171 R 171 (305)
T ss_pred H
Confidence 4
No 296
>PF13479 AAA_24: AAA domain
Probab=70.46 E-value=1.8 Score=46.43 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=16.3
Q ss_pred CccEeeeccCCCCcccccc
Q 001657 81 NATVLAYGQTGSGKTYTMG 99 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm~ 99 (1036)
+..|+.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999999873
No 297
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=70.32 E-value=1.8 Score=41.67 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.6
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
|+-||+.|+|||++.
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999987
No 298
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=70.28 E-value=2.5e+02 Score=33.92 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 845 KNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQR 890 (1036)
Q Consensus 845 k~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~ 890 (1036)
+..++.+-.--.+....+.+++.+++.+-.+|+++....--...+.
T Consensus 397 r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~ 442 (531)
T PF15450_consen 397 RKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDS 442 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Confidence 4445666655566666777777777777777777776655444333
No 299
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=70.22 E-value=2.1 Score=48.95 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=20.1
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.++..++.+ ...|+..|+||||||++|
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 455556655 456777799999999887
No 300
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=70.18 E-value=77 Score=34.47 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 382 QKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELH 429 (1036)
Q Consensus 382 ~~Lr~ei~~Lq~eL~~~~~~~~~~e~~~L~eki~~L~~e~~~L~~eL~ 429 (1036)
..-+..|..++.+|.+..-...+..=+.|..+...|.++|+.|-.+..
T Consensus 187 e~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s 234 (330)
T KOG2991|consen 187 EQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQAS 234 (330)
T ss_pred HHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhh
Confidence 333344445555554432222333445677888888888888877654
No 301
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=70.09 E-value=1.5 Score=45.09 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=13.4
Q ss_pred hcCCCccEeeeccCCCCccccc
Q 001657 77 FQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 77 l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..|...+|+.+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 4567788999999999999987
No 302
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=69.80 E-value=89 Score=31.03 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 872 IKEQLNDLVALLKQSEAQRKELVKQQRMREQAVT 905 (1036)
Q Consensus 872 ~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~ 905 (1036)
+++.+..|...+..++.+...+..+++.....+.
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444433333333
No 303
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=69.60 E-value=3.6e+02 Score=35.49 Aligned_cols=68 Identities=22% Similarity=0.125 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA---LNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1036)
Q Consensus 631 kmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~---~~~~q~~vLqRK~eE~~a~~krLke~Le~ 698 (1036)
+++..+..+-......+.++.+++..++..++=+.++.. ...++...|++-+++++..+.-|=+.|..
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~ 557 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDR 557 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444455555666666666666665555544 44555556888888888877777655553
No 304
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.55 E-value=29 Score=36.60 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=27.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001657 860 FQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (1036)
Q Consensus 860 ~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~ 913 (1036)
..+..++.++.++...+.+.......++-|+.-|.-++...|.++..|-..-..
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555555544433
No 305
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=69.39 E-value=3.2e+02 Score=34.71 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHH
Q 001657 382 QKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATN 421 (1036)
Q Consensus 382 ~~Lr~ei~~Lq~eL~~~~~~~~~~e~~~L~eki~~L~~e~ 421 (1036)
..|..++..|+.++.+.....+.----.|.++|..|..+.
T Consensus 432 ~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~ 471 (762)
T PLN03229 432 RELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEI 471 (762)
T ss_pred ccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHH
Confidence 3577788888888876632211111123555565555543
No 306
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.09 E-value=2.3 Score=44.25 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=18.7
Q ss_pred chhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 69 v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
+..+...-+-.-.-.++-||++|+||||..
T Consensus 35 ~~~l~~~~~~~~~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 35 IAQLAALEFIENGENLILYGPPGTGKTHLA 64 (178)
T ss_dssp HHHHHHH-S-SC--EEEEEESTTSSHHHHH
T ss_pred HHHHhcCCCcccCeEEEEEhhHhHHHHHHH
Confidence 344433333333445899999999999997
No 307
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.76 E-value=2.7e+02 Score=33.72 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=59.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001657 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQ 674 (1036)
Q Consensus 598 ~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L---~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q 674 (1036)
..+.+++..-+..-++-.++|+..++-..+| +-.++.++.........+..+..+|..-+-|++.++..+....+.+
T Consensus 313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqk 392 (654)
T KOG4809|consen 313 RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQK 392 (654)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 4455555555666666777888888887777 5566778888888999999999999999999999988887655544
Q ss_pred H
Q 001657 675 K 675 (1036)
Q Consensus 675 ~ 675 (1036)
+
T Consensus 393 k 393 (654)
T KOG4809|consen 393 K 393 (654)
T ss_pred H
Confidence 3
No 308
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=68.51 E-value=3.1e+02 Score=34.34 Aligned_cols=93 Identities=23% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhhhccccchhhccHHHHH----HHHH-HHHHHHHhHHHHHhhHHHHH
Q 001657 795 MERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAK----NLLQ-YMFNVAAETRFQLWEKDTEI 869 (1036)
Q Consensus 795 ~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak----~~l~-~l~~~~~~~~~ql~E~~~k~ 869 (1036)
.+-..+|+........++.++..++..+........ ..-|..-+.+.--+ .+|+ ++...-.-.+-+|.+.+.++
T Consensus 520 se~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~-eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rL 598 (739)
T PF07111_consen 520 SEVAQQLEQELQEKQESLAELEEQLEAARKSLQEST-EEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRL 598 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467777777778888888888877753221111 11111111111111 1121 22221112224667777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001657 870 KEIKEQLNDLVALLKQSEA 888 (1036)
Q Consensus 870 ~E~~~~~~el~~~~~~~~~ 888 (1036)
.|..|......--|++++-
T Consensus 599 NeARREHtKaVVsLRQ~qr 617 (739)
T PF07111_consen 599 NEARREHTKAVVSLRQIQR 617 (739)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777666666665554
No 309
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=67.89 E-value=2.2e+02 Score=32.31 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 501 ~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
.++-.+.-..|++.-..++.+.............+-|.++...|..++++.+.|...+...
T Consensus 47 r~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 47 RQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554333444444556666777777777777777777666543
No 310
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=67.76 E-value=2.5 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=15.8
Q ss_pred HHHhhcCCCccEeeeccCCCCccccc
Q 001657 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 73 V~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
|..++..-. ..+..|+.|||||+|+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
Confidence 344443222 4566899999999998
No 311
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=67.70 E-value=2.6 Score=44.02 Aligned_cols=29 Identities=31% Similarity=0.325 Sum_probs=21.1
Q ss_pred chhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 69 v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..+++..++.. ...|+-.|+||||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 44555555554 456777899999999987
No 312
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=67.68 E-value=3e+02 Score=33.75 Aligned_cols=44 Identities=7% Similarity=-0.009 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcCCCCCcc
Q 001657 893 LVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSGPLSPVS 936 (1036)
Q Consensus 893 l~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~~~~~~~ 936 (1036)
+.--|=.+.+.+-.|...++++.=|++-+..++.+-.++..|.+
T Consensus 397 lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~~~~~~~ 440 (511)
T PF09787_consen 397 LTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEASNNRPSS 440 (511)
T ss_pred ccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhccCCCCch
Confidence 33334466777888999999999999999888886333333443
No 313
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=67.17 E-value=2.7e+02 Score=33.10 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 500 MDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (1036)
Q Consensus 500 l~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~ 560 (1036)
..+-...+..+++-+..+...+...-.+++ ...+++..|++..+.++..--.+...+..
T Consensus 262 f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~--k~s~~i~~l~ek~r~l~~D~nk~~~~~~~ 320 (622)
T COG5185 262 FEKFVHIINTDIANLKTQNDNLYEKIQEAM--KISQKIKTLREKWRALKSDSNKYENYVNA 320 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445566666666665554433220001111 24466777777777775555444444433
No 314
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=67.09 E-value=3 Score=44.47 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=17.3
Q ss_pred hHHHhhcCCCccEeeeccCCCCccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.++.++ .+-.|++.|+.||||||.-
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHH
Confidence 345555 6668999999999999886
No 315
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=66.90 E-value=2.7 Score=48.02 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=19.7
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.++..++.+. ..|+..|+||||||++|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4455555432 45788899999999999
No 316
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.67 E-value=2.9e+02 Score=33.20 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001657 746 YEKQSQVQAALADELTILKQVD 767 (1036)
Q Consensus 746 ~~~q~e~r~k~~~El~~Lk~~~ 767 (1036)
+.+.+..++-+++++..|+-.+
T Consensus 233 lq~~~~ehkllee~~~rl~~~~ 254 (613)
T KOG0992|consen 233 LQALIREHKLLEEHLERLHLQL 254 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555777888888887643
No 317
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=66.45 E-value=2.7 Score=46.45 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=22.3
Q ss_pred cccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 62 SAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 62 ~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..+|.. +..++..+- ....++-||++|+||||..
T Consensus 89 ~~~l~~-~~~~~~~~~--~~~nl~l~G~~G~GKThLa 122 (254)
T COG1484 89 KKALED-LASLVEFFE--RGENLVLLGPPGVGKTHLA 122 (254)
T ss_pred HHHHHH-HHHHHHHhc--cCCcEEEECCCCCcHHHHH
Confidence 344433 444555554 3445677999999999998
No 318
>PRK06547 hypothetical protein; Provisional
Probab=66.45 E-value=3.2 Score=43.02 Aligned_cols=30 Identities=43% Similarity=0.446 Sum_probs=20.9
Q ss_pred chhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 69 v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
|..++..+..+.-..|+.+|++|||||+.-
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555655555555666799999999875
No 319
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=66.29 E-value=4.6 Score=38.15 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.7
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999988
No 320
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=66.23 E-value=2.6 Score=47.74 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.4
Q ss_pred cCC-CccEeeeccCCCCccccc
Q 001657 78 QGY-NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 78 ~G~-N~ti~aYGqTgSGKTyTm 98 (1036)
.|. ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 454 346666999999999987
No 321
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.23 E-value=2.4e+02 Score=32.19 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001657 578 LKLKALEAQILELK 591 (1036)
Q Consensus 578 ~~l~~LE~el~~L~ 591 (1036)
.+...|..++..|+
T Consensus 179 ~~~~~L~~e~~~L~ 192 (312)
T smart00787 179 DRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 322
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.00 E-value=2.2e+02 Score=31.64 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 536 KIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 536 ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
++..+...+..+..+++.|..++...
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666554
No 323
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=65.97 E-value=2.5 Score=52.66 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=31.8
Q ss_pred eEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 47 ~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.-+||.+++.+ .. +..++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGqs-----~~----~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQE-----RA----IKALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeCc-----HH----HHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46788888542 12 334566667788888999999999999876
No 324
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.73 E-value=56 Score=38.92 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=40.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcCCCCCccccC
Q 001657 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKE-LVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSGPLSPVSLPA 939 (1036)
Q Consensus 861 ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~e-l~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~~~~~~~~~~ 939 (1036)
+++.+..+.+.+..+-+.|..+......+... +.....+......+|....+.+..++.+++++|+.+...-+.....-
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~d~ 153 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLTGPSGGGSDL 153 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Confidence 33333333333333333333333333333333 33333344444455555555666778888888887765312111122
Q ss_pred ccccccccC
Q 001657 940 PKQLKFTPG 948 (1036)
Q Consensus 940 ~~~~~~~~~ 948 (1036)
|--|.+.||
T Consensus 154 P~GlG~~~g 162 (472)
T TIGR03752 154 PVGLGLDPG 162 (472)
T ss_pred CcccCCCCC
Confidence 333566554
No 325
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=65.67 E-value=2.8 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=17.2
Q ss_pred hcCCCccEeeeccCCCCccccc
Q 001657 77 FQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 77 l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
+.-.++.++..|..|||||+||
T Consensus 9 i~~~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 9 IRSTEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp HHS-SSEEEEEE-TTSSHHHHH
T ss_pred HhCCCCCEEEEeCCCCCchHHH
Confidence 3347888899999999999999
No 326
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=65.62 E-value=4.8 Score=48.13 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=34.6
Q ss_pred cEeeeccCCCCccccc---ccCCCCCCccccHHHHHHHHHHHHHhh
Q 001657 83 TVLAYGQTGSGKTYTM---GTGLREGFQTGLIPQVMNALFNKIETL 125 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm---~G~~~~~~~~Giipr~~~~LF~~i~~~ 125 (1036)
.||..|||.|||||-- ++....+.-.|=+-...+++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 4899999999999986 344445667788888999999998764
No 327
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.61 E-value=1.3e+02 Score=33.08 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=24.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 001657 602 KQKHKSDEAAKRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQ 641 (1036)
Q Consensus 602 K~K~K~E~~~~~L~~ei~~lk~~kv~L---~rkmk~e~~~~~~ 641 (1036)
+.-...+.++..|+..|..+...+..+ +.+|-..++.|-+
T Consensus 77 ~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 77 RQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555556666666666655554 7777777777665
No 328
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=65.47 E-value=1.6e+02 Score=33.34 Aligned_cols=123 Identities=25% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001657 487 VAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSD 566 (1036)
Q Consensus 487 e~~~~e~~~~q~kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~ 566 (1036)
.....++-..+..+..-+-..++.|.++|..+.... ...+........-..........++.....+.+.+..+.
T Consensus 175 ~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~-~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~---- 249 (297)
T PF02841_consen 175 EEVLQEFLQSKESMENSILQADQQLTEKEKEIEEEQ-AKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLK---- 249 (297)
T ss_dssp HHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001657 567 GHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIK 622 (1036)
Q Consensus 567 ~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk 622 (1036)
.|+..+++....+.+ .-|..+...+..++ +.-...++..|+.+|..|+
T Consensus 250 ---ekme~e~~~~~~e~e---~~l~~k~~eq~~~l--~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 250 ---EKMEEEREQLLQEQE---RLLEQKLQEQEELL--KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp ---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HCT-HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
No 329
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.46 E-value=1.5e+02 Score=31.33 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 533 FGKKIMELEEEKRIVQQERDRLLAEIEN 560 (1036)
Q Consensus 533 ~e~ki~~Le~ei~~lqkErd~Ll~~l~~ 560 (1036)
|..=..+|=-++.---.||=.|+..+.+
T Consensus 64 y~~~F~ELIRQVTi~C~ERGlLL~rvrd 91 (189)
T PF10211_consen 64 YSQCFDELIRQVTIDCPERGLLLLRVRD 91 (189)
T ss_pred HHHHHHHHHHHHHhCcHHHhHHHHHHHH
Confidence 4445555555666666777777766653
No 330
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=65.39 E-value=1.8e+02 Score=34.82 Aligned_cols=62 Identities=27% Similarity=0.266 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001657 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEAL 670 (1036)
Q Consensus 605 ~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~ 670 (1036)
++.-.++..+++++..+-.+.|++++|++.=... +..+--.+...+...|..+.|...|+-+
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~E----keel~~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHE----KEELDEHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344455566666777777777766666533222 2222233334455555566666665543
No 331
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=65.38 E-value=5.9 Score=50.41 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=36.3
Q ss_pred hHHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhhh
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEE 144 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~ 144 (1036)
.+..+++|.|+.|+| |||||||-+- ++| +++.|+..-.....+.-+.++||=+---|..
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA-----------fLp-il~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA-----------FLP-VINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH-----------HHH-HHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 456678999999988 9999998775 222 3444443311111234577777766554443
No 332
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=65.30 E-value=2.9 Score=47.57 Aligned_cols=78 Identities=24% Similarity=0.284 Sum_probs=44.8
Q ss_pred hhhHHHhhcCCCccEeeeccCCCCcccccc--cCCCCCCcc----------------------------ccHHHHHHHHH
Q 001657 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGLREGFQT----------------------------GLIPQVMNALF 119 (1036)
Q Consensus 70 ~plV~~~l~G~N~ti~aYGqTgSGKTyTm~--G~~~~~~~~----------------------------Giipr~~~~LF 119 (1036)
..++-.+..++ +.|+..|.||||||+++- -++-+...+ |-=.-.+.+|.
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLv 241 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLV 241 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHH
Confidence 34444555555 788899999999999971 111111111 11222455555
Q ss_pred HHHHhhcccceEEEEeehhhhhhhhhhhccCCcc
Q 001657 120 NKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (1036)
Q Consensus 120 ~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~ 153 (1036)
..--.++++. +=+-||+..+.+|||..-+
T Consensus 242 kn~LRmRPDR-----IiVGEVRG~Ea~dLL~Amn 270 (355)
T COG4962 242 KNALRMRPDR-----IIVGEVRGVEALDLLQAMN 270 (355)
T ss_pred HHHhhcCccc-----eEEEEecCccHHHHHHHhc
Confidence 4433334442 2256899999999997533
No 333
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=65.28 E-value=6.7 Score=46.75 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=26.8
Q ss_pred cEeeeccCCCCcccccc---c----CCC-------CCCccccHHHHHHHHHHHHHh
Q 001657 83 TVLAYGQTGSGKTYTMG---T----GLR-------EGFQTGLIPQVMNALFNKIET 124 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm~---G----~~~-------~~~~~Giipr~~~~LF~~i~~ 124 (1036)
.|+-||++|+|||++.- + .+- .....|--++.+..+|.....
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 274 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHh
Confidence 48889999999999861 1 100 011235566778888876544
No 334
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=65.27 E-value=3.6 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.7
Q ss_pred hcCCCccEeeeccCCCCccccc
Q 001657 77 FQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 77 l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
+......++-+|++|||||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3444567888999999999887
No 335
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=65.00 E-value=3.1 Score=47.40 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=17.1
Q ss_pred cCCCccEeeeccCCCCccccc
Q 001657 78 QGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 78 ~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.|....++-||++|+|||++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 454446889999999999988
No 336
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=64.60 E-value=1.8e+02 Score=30.18 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001657 643 KASREKELLKLKKEGRKNEFERHKLEALNQRQKM 676 (1036)
Q Consensus 643 ~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~ 676 (1036)
+.+..-+....+......+..|..+.++....-+
T Consensus 108 klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~ 141 (177)
T PF07798_consen 108 KLDLNLEKGRIREEQAKQELKIQELNNKIDTEIA 141 (177)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555544443333
No 337
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=64.03 E-value=3.1 Score=46.93 Aligned_cols=27 Identities=44% Similarity=0.722 Sum_probs=21.0
Q ss_pred hhHHHhhcCCC---ccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N---~ti~aYGqTgSGKTyTm 98 (1036)
|.+...+.|.- -|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 66777777763 46665 99999999887
No 338
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.99 E-value=74 Score=33.89 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=42.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcCC
Q 001657 862 LWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSGP 931 (1036)
Q Consensus 862 l~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~~ 931 (1036)
+-++.-+++|....-.+|-+.+..++++.+++.-.++..+.-.++|.-.--.+-....+++..++|+-..
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 4445555555555566666666666666666666666666666666555555555566666666666554
No 339
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=63.99 E-value=3.9e+02 Score=33.80 Aligned_cols=170 Identities=15% Similarity=0.108 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCCccccccCChhH-HHHHHHHHHHHHHhcHHHHHHHH
Q 001657 738 NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNA-RMERIASLENMLNMSSKALVEMA 816 (1036)
Q Consensus 738 ~l~E~~~~~~~q~e~r~k~~~El~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-r~~qi~~Lq~~~~~~~~~~~~l~ 816 (1036)
.++-++.+++..++.+.++-.++.+=.. -.+. -+.+-. .+..+..|-..+..+..++..|.
T Consensus 455 e~~t~gsA~ed~Qeqn~kL~~el~ekdd-~nfk-----------------lm~e~~~~~q~~k~L~~ek~~l~~~i~~l~ 516 (698)
T KOG0978|consen 455 EMETIGSAFEDMQEQNQKLLQELREKDD-KNFK-----------------LMSERIKANQKHKLLREEKSKLEEQILTLK 516 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677767777776666653111 0000 011111 12223445566666667777776
Q ss_pred HHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 817 SQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQ 896 (1036)
Q Consensus 817 ~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~ 896 (1036)
.+.+-+.-+.+.+-++.+... .+..-....+..+.. -+.....+..|+...+..|...+.+.+..+.++..+
T Consensus 517 ~~~~~~~~~i~~leeq~~~lt-~~~~~l~~el~~~~~-------~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~ 588 (698)
T KOG0978|consen 517 ASVDKLELKIGKLEEQERGLT-SNESKLIKELTTLTQ-------SLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQ 588 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-HhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665433332221111100 011111112222222 223333444445555555555555555556666666
Q ss_pred HHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcCCCC
Q 001657 897 QRMREQAVTIALASSASQGSSWRSSKHFADDMSGPLS 933 (1036)
Q Consensus 897 l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~~~~ 933 (1036)
+.+.+..+..+.....-+...++-+++-|+.+.-+-+
T Consensus 589 ~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 589 YAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6666666666655555556667777888888776544
No 340
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=63.85 E-value=12 Score=42.53 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=21.4
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm~G 100 (1036)
.+|-.++.|.+| +.+..||||||..+-.
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaL 63 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFAL 63 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhH
Confidence 345667899987 4567899999998844
No 341
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=63.83 E-value=2.1e+02 Score=30.54 Aligned_cols=125 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--
Q 001657 610 AAKRLQAEIQSIKAQKVQL----------QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMV-- 677 (1036)
Q Consensus 610 ~~~~L~~ei~~lk~~kv~L----------~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~v-- 677 (1036)
.+..=..||.-||.|.-+. +-.+|..++..+......+..+..|+...+.+..|+-..+...++.++-
T Consensus 4 evCqk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~ 83 (202)
T PF06818_consen 4 EVCQKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAE 83 (202)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHH----------------hhhhhhcccccCCCCCCCCCCchHHHHHHHHHHHHHH-HhH
Q 001657 678 -LQRKTEEAAIATKRLKELLEAR----------------KSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS-ANV 739 (1036)
Q Consensus 678 -LqRK~eE~~a~~krLke~Le~e----------------k~~r~k~e~~~~~~~~~~~~~~~~~~~~Wl~~ELE~l-~~l 739 (1036)
|+.|+-.+.+.+..|++.+..- ++.+......... |..++|-+ ..|
T Consensus 84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~----------------l~~e~erL~aeL 147 (202)
T PF06818_consen 84 LLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGS----------------LRREVERLRAEL 147 (202)
T ss_pred HhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchh----------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 001657 740 HEVRFKYEKQS 750 (1036)
Q Consensus 740 ~E~~~~~~~q~ 750 (1036)
...+...+.+.
T Consensus 148 ~~er~~~e~q~ 158 (202)
T PF06818_consen 148 QRERQRREEQR 158 (202)
T ss_pred HHHHHhHHHHH
No 342
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=63.55 E-value=3.6 Score=47.28 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=19.1
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.++..++.+ ...|+..|+||||||++|
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHHH
Confidence 344444443 345777899999999998
No 343
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=63.47 E-value=4.4 Score=41.26 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=18.4
Q ss_pred hHHHhhcCCCccEeeeccCCCCccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
++..+..+. ..++..|+||||||+++
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAA 41 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHH
Confidence 344444443 45677799999999988
No 344
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=63.40 E-value=2.9 Score=48.18 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=19.0
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.++..+.. ..+.|+..|+||||||++|
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 33444443 3455788899999999998
No 345
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=63.29 E-value=2.9 Score=44.29 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=13.1
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
-++.+|.||||||++|
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 7889999999999999
No 346
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.25 E-value=3e+02 Score=32.27 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=40.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001657 599 ELLKQKHKSDEAAKRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHK 666 (1036)
Q Consensus 599 ~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L---~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~ 666 (1036)
.+..++.+.++.+.+|+.++.+-.++-..+ .=.++.+.+-.+.....+|-++..|+++.+..-.|..+
T Consensus 3 ~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 3 PLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777776665554444 22344555555555666666777777666666655555
No 347
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=63.05 E-value=2.9e+02 Score=31.97 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 001657 748 KQSQVQAALADELTILKQVD 767 (1036)
Q Consensus 748 ~q~e~r~k~~~El~~Lk~~~ 767 (1036)
.-++++..+.+|+..||.-+
T Consensus 471 HNQELnnRLaaEItrLRtll 490 (593)
T KOG4807|consen 471 HNQELNNRLAAEITRLRTLL 490 (593)
T ss_pred HHHHHhhHHHHHHHHHHHHh
Confidence 34677888899999988744
No 348
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.04 E-value=1.7e+02 Score=29.34 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001657 599 ELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (1036)
Q Consensus 599 ~L~K~K~K~E~~~~~L~~ei~~lk~~kv~ 627 (1036)
.+.+.|..+.+.+...+..|..+......
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444444444444444
No 349
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=63.00 E-value=88 Score=34.16 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH-
Q 001657 797 RIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQ- 875 (1036)
Q Consensus 797 qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~- 875 (1036)
+|+.++.. ...+.....+.+.+..+- +.+....+.+...+.+.+...++=..+.++..++..++..
T Consensus 2 ~L~~l~~~-~~~~~~~~~~i~~l~~al------------~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~ 68 (240)
T PF12795_consen 2 QLDQLNKR-KLDEPEQKALIQDLQQAL------------SFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQD 68 (240)
T ss_pred hHhHhhcc-CCCChhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcCCCCCccccCcccc
Q 001657 876 -----------LNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSGPLSPVSLPAPKQL 943 (1036)
Q Consensus 876 -----------~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~~~~~~~~~~~~~~ 943 (1036)
+.+|..++....+++.++..++...+..+..+.-....+..++.+++..++++..-|.-........+
T Consensus 69 ~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l 147 (240)
T PF12795_consen 69 APSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPL 147 (240)
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchh
No 350
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=62.92 E-value=3 Score=46.60 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=22.7
Q ss_pred cccccchhhHHHhhcC-CCccEeeeccCCCCccccc
Q 001657 64 MFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 64 vy~~~v~plV~~~l~G-~N~ti~aYGqTgSGKTyTm 98 (1036)
++...|-.++.+.+.| .---.+-|||.|+|||.|.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3334444444444444 4444668999999999997
No 351
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=62.65 E-value=3 Score=43.17 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.8
Q ss_pred ccEeeeccCCCCccccc
Q 001657 82 ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm 98 (1036)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999976
No 352
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=62.61 E-value=3.1 Score=40.86 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.7
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
|+.+|++|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999886
No 353
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=62.51 E-value=2.8 Score=49.37 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCceeee---------------cceeEEcceeeCCCCCCccccccccchh
Q 001657 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (1036)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~v~v~~~~~~v~~---------------~~~~F~FD~Vf~~~~t~q~~vy~~~v~p 71 (1036)
.+.-..+|++.+....+.......+..-......+.+ ....++|+.|-|.+.. -..+.+.+..|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~-k~~l~~~v~~p 164 (398)
T PTZ00454 86 TSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQ-KQEIREAVELP 164 (398)
T ss_pred CCCCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHH-HHHHHHHHHHH
Q ss_pred hHH-HhhcCCC----ccEeeeccCCCCcccc
Q 001657 72 LVD-GLFQGYN----ATVLAYGQTGSGKTYT 97 (1036)
Q Consensus 72 lV~-~~l~G~N----~ti~aYGqTgSGKTyT 97 (1036)
+.. .++..+. ..|+-||++|+|||+.
T Consensus 165 l~~~~~~~~~Gl~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 165 LTCPELYEQIGIDPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred hcCHHHHHhcCCCCCceEEEECCCCCCHHHH
No 354
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.42 E-value=3.2e+02 Score=32.24 Aligned_cols=74 Identities=24% Similarity=0.268 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHHHHHHH
Q 001657 606 KSDEAAKRLQAEIQSIKAQKVQL---QNKIKQEAE--QFRQWKASREKELLKLKKEGRKNEFERHKLEA--LNQRQKMVL 678 (1036)
Q Consensus 606 K~E~~~~~L~~ei~~lk~~kv~L---~rkmk~e~~--~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~--~~~~q~~vL 678 (1036)
-++.+-+.|++.+..++.-.-++ ++++.++.. ...+.....-+++..|..+..=++.|+..+.. .+.+|.+.+
T Consensus 266 ~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~ 345 (446)
T KOG4438|consen 266 ELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLKMFENLTKQLNEL 345 (446)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444 566665552 44566677778888888777777777666664 444444444
Q ss_pred H
Q 001657 679 Q 679 (1036)
Q Consensus 679 q 679 (1036)
+
T Consensus 346 ~ 346 (446)
T KOG4438|consen 346 K 346 (446)
T ss_pred H
Confidence 3
No 355
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.29 E-value=66 Score=41.39 Aligned_cols=6 Identities=17% Similarity=0.578 Sum_probs=3.0
Q ss_pred cccCCC
Q 001657 315 HVPYRD 320 (1036)
Q Consensus 315 ~iPyRd 320 (1036)
+||...
T Consensus 354 ~Vpa~~ 359 (771)
T TIGR01069 354 PIPANE 359 (771)
T ss_pred CccCCc
Confidence 555543
No 356
>PRK13764 ATPase; Provisional
Probab=62.29 E-value=3.7 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.6
Q ss_pred HhhcCCCccEeeeccCCCCccccc
Q 001657 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 75 ~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..+......|+..|+||||||+++
T Consensus 251 ~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 251 ERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH
Confidence 333344555899999999999998
No 357
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=62.17 E-value=3.1 Score=48.01 Aligned_cols=51 Identities=16% Similarity=0.325 Sum_probs=34.3
Q ss_pred eEEcceeeCCCCCCccccccccchhhHHHhhc----CCCccEeeeccCCCCccccc
Q 001657 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ----GYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 47 ~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~----G~N~ti~aYGqTgSGKTyTm 98 (1036)
+++||++.+.-.. -..|.+.++-.++.+++. -.---++-||+.|+|||+..
T Consensus 111 ~~~f~~~~g~~~~-~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 111 TRSFDNLVGGYYI-APAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hcchhhhcCcccc-CHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 4677777654332 355666666677777764 33345778999999999874
No 358
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=62.11 E-value=4.5e+02 Score=33.91 Aligned_cols=66 Identities=29% Similarity=0.304 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA----L---NQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1036)
Q Consensus 634 ~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~----~---~~~q~~vLqRK~eE~~a~~krLke~Le~e 699 (1036)
....++..-+...++|--.|++++.|+..|-.+-.. + .....-+-.+-++|....++||.+..+.+
T Consensus 1075 aq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~ 1147 (1189)
T KOG1265|consen 1075 AQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKR 1147 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677778888888888888877776444222 1 22222235556677777778887665543
No 359
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=61.80 E-value=3.2 Score=46.61 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=14.0
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
.|+-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999999
No 360
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=61.49 E-value=79 Score=27.83 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=20.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIA 907 (1036)
Q Consensus 861 ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l 907 (1036)
|..+.+.-+.+++.....-......|..++.+|++++......+..|
T Consensus 22 q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 22 QQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444444444444444444444444333
No 361
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=61.49 E-value=2.5e+02 Score=30.75 Aligned_cols=14 Identities=7% Similarity=0.347 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 001657 534 GKKIMELEEEKRIV 547 (1036)
Q Consensus 534 e~ki~~Le~ei~~l 547 (1036)
+.++..+.+.+..|
T Consensus 33 e~r~~~i~e~i~~L 46 (247)
T PF06705_consen 33 EQRFQDIKEQIQKL 46 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555554
No 362
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.38 E-value=3.5 Score=48.37 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=16.2
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
...|+.+|+||+|||+|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999998
No 363
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=61.16 E-value=72 Score=35.25 Aligned_cols=71 Identities=25% Similarity=0.259 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 625 KVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE-----RHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1036)
Q Consensus 625 kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~E-----i~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~e 699 (1036)
|.-.+|.||.-++.......+++.||..||.++-|++.. .|+.+++ =-.+||--.|+.||..+|.-
T Consensus 66 KEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQ---------LALKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 66 KEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQ---------LALKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 333467777777777777788889999999888887654 5555542 23567777888898888876
Q ss_pred hhhhh
Q 001657 700 KSSAR 704 (1036)
Q Consensus 700 k~~r~ 704 (1036)
|++-.
T Consensus 137 rssL~ 141 (305)
T PF15290_consen 137 RSSLA 141 (305)
T ss_pred Hhhhc
Confidence 65543
No 364
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=61.10 E-value=3e+02 Score=31.50 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=91.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-
Q 001657 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM- 676 (1036)
Q Consensus 598 ~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~- 676 (1036)
..+...-.+...++..|+.+++.+---+.+ +..|-.-|+.-...+..|+..+=.-...+-..|-.|-+.+.-.+.
T Consensus 129 e~lV~qLEk~~~q~~qLe~d~qs~lDEkeE----l~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~er 204 (319)
T PF09789_consen 129 EDLVEQLEKLREQIEQLERDLQSLLDEKEE----LVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKER 204 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHH
Confidence 334443344555555555555544333333 556667777777778888877777666666666666664333332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC-CCCCCCCCchHHHHHHHH---------------HHHHHH--
Q 001657 677 --VLQRKTEEAAIATKRLKELLEARKSSARENSVNSTG-YTTPTGQSNEKSLQKWLE---------------HELEVS-- 736 (1036)
Q Consensus 677 --vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~-~~~~~~~~~~~~~~~Wl~---------------~ELE~l-- 736 (1036)
.++....=+-+.+.+-|-+|++.+... ..+...+ .++.++-.+.+-|+..|. .+|..|
T Consensus 205 l~q~qeE~~l~k~~i~KYK~~le~k~~~~--~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~ 282 (319)
T PF09789_consen 205 LKQLQEEKELLKQTINKYKSALERKRKKG--IIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLAT 282 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHH
Confidence 366666666777888888888633211 1111100 011122245667777662 333433
Q ss_pred ---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 737 ---ANVHEVRFKYEKQSQVQAALADELTILKQV 766 (1036)
Q Consensus 737 ---~~l~E~~~~~~~q~e~r~k~~~El~~Lk~~ 766 (1036)
..++|---++..|-.-++.+...++.|.+.
T Consensus 283 aLle~indK~~al~Hqr~tNkILg~rv~ELE~k 315 (319)
T PF09789_consen 283 ALLETINDKNLALQHQRKTNKILGNRVAELEKK 315 (319)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555556666666677777777777653
No 365
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=60.55 E-value=3.4 Score=40.63 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=13.8
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999887
No 366
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=60.53 E-value=3.5 Score=39.39 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=13.3
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 367
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=60.30 E-value=5.1 Score=41.96 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=19.6
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..++.++.|.| ++..++||+|||.+.
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 34555666777 677899999999874
No 368
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=60.10 E-value=1.8 Score=50.96 Aligned_cols=49 Identities=29% Similarity=0.424 Sum_probs=0.0
Q ss_pred EEcceeeCCCCCCccccccccchhhHH-HhhcCC----CccEeeeccCCCCcccc
Q 001657 48 FTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGY----NATVLAYGQTGSGKTYT 97 (1036)
Q Consensus 48 F~FD~Vf~~~~t~q~~vy~~~v~plV~-~~l~G~----N~ti~aYGqTgSGKTyT 97 (1036)
++||.|.+-+.. -..+.+.+..|+.. .+|..+ ...|+-||++|+|||+.
T Consensus 128 ~~~~di~Gl~~~-~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 128 VTYEDIGGLEEQ-IREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCHHHhCCcHHH-HHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHH
No 369
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.01 E-value=56 Score=33.62 Aligned_cols=62 Identities=27% Similarity=0.294 Sum_probs=31.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001657 491 WEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (1036)
Q Consensus 491 ~e~~~~q~kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~ 562 (1036)
.++...-..|..++.+|+..+..++.++..+...-+ ..+|...|..++.|...+.+.|..+.
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t----------~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPT----------NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555544431111 23455556666666666666666654
No 370
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=59.51 E-value=3.8 Score=44.71 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=15.5
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
.-+|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 457899999999998875
No 371
>PLN03025 replication factor C subunit; Provisional
Probab=59.39 E-value=3.2 Score=47.36 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=15.8
Q ss_pred CCCccEeeeccCCCCccccc
Q 001657 79 GYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 79 G~N~ti~aYGqTgSGKTyTm 98 (1036)
|.-..++-||+.|+|||++.
T Consensus 32 ~~~~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSI 51 (319)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33334677999999999998
No 372
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=59.31 E-value=3.7 Score=45.90 Aligned_cols=70 Identities=23% Similarity=0.208 Sum_probs=38.8
Q ss_pred EeeeccCCCCcccccc----cC----CCC-----CCccccHHHHHHHHHH--HHHhh---cccc----------eEEEEe
Q 001657 84 VLAYGQTGSGKTYTMG----TG----LRE-----GFQTGLIPQVMNALFN--KIETL---RHQM----------EFQLHV 135 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm~----G~----~~~-----~~~~Giipr~~~~LF~--~i~~~---~~~~----------~~~v~v 135 (1036)
...||+|||||++.+- +. ... ....|+||-.=...++ -.+.. .++. --.|.+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~m 169 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVEM 169 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccccccceee
Confidence 4579999999999872 11 111 2456888864433332 22211 1111 112667
Q ss_pred ehhhhhhhhhhhccCCcc
Q 001657 136 SFIEILKEEVRDLLDSVS 153 (1036)
Q Consensus 136 S~~EIynE~v~DLL~~~~ 153 (1036)
||=|+-.++=+|.=+|.+
T Consensus 170 sy~e~t~~~NldI~~p~N 187 (369)
T PF02456_consen 170 SYDEATSPENLDITNPNN 187 (369)
T ss_pred cHhhhCCccccCCCCchH
Confidence 776666676677666543
No 373
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.18 E-value=55 Score=37.10 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=20.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001657 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (1036)
Q Consensus 598 ~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~ 627 (1036)
+-..|++.+.++.+..+..+++.+|+...+
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~Ee 243 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTEEE 243 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444566666777777777777777777666
No 374
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=59.12 E-value=13 Score=48.15 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=49.1
Q ss_pred ccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhh-hhhhhccCCccccccccc
Q 001657 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILK-EEVRDLLDSVSVSKSVTA 160 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyn-E~v~DLL~~~~~~~~~~~ 160 (1036)
++++-+|+||+|||++. ..+...||. ...+.+.+.+-+... ..+.-|+.+.+
T Consensus 597 ~~~lf~Gp~GvGKT~lA-------------~~La~~l~~-------~~~~~~~~dmse~~~~~~~~~l~g~~~------- 649 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA-------------LALAELLYG-------GEQNLITINMSEFQEAHTVSRLKGSPP------- 649 (852)
T ss_pred eEEEEECCCCCCHHHHH-------------HHHHHHHhC-------CCcceEEEeHHHhhhhhhhccccCCCC-------
Confidence 46888999999999987 222334442 122445555555432 23445553322
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcc
Q 001657 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGS 209 (1036)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~ 209 (1036)
|..|.. ..+.-.-.++..|...+.+..+-...-.-..-++++|..|.
T Consensus 650 -gyvg~~-~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~ 696 (852)
T TIGR03345 650 -GYVGYG-EGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGV 696 (852)
T ss_pred -Cccccc-ccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcce
Confidence 111100 00000112344556666776665444444445666666653
No 375
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.99 E-value=4.2 Score=45.68 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=14.0
Q ss_pred ccEeeeccCCCCcccc
Q 001657 82 ATVLAYGQTGSGKTYT 97 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyT 97 (1036)
+-|+..||||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 5688999999999975
No 376
>PHA00729 NTP-binding motif containing protein
Probab=58.92 E-value=5 Score=43.42 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=21.1
Q ss_pred hhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 70 ~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..++..+..|-=..|+.+|.+|+||||..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 44556555433347999999999999876
No 377
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=58.72 E-value=4 Score=47.50 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.8
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
...|+-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457778899999999998
No 378
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=58.58 E-value=2.6e+02 Score=29.95 Aligned_cols=184 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCCcccccchhhhhc
Q 001657 382 QKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRG 461 (1036)
Q Consensus 382 ~~Lr~ei~~Lq~eL~~~~~~~~~~e~~~L~eki~~L~~e~~~L~~eL~~~~~~la~~Ee~~~~~~~~~~~~~~~~~L~~~ 461 (1036)
..|+..|..++..+... ...+.........++.+...+......+..+...+-..
T Consensus 26 ~~l~q~ird~e~~l~~a-----~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~-------------------- 80 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKA-----RQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA-------------------- 80 (221)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------------
Q ss_pred cccccccchhhhhhhhcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q 001657 462 FQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELE 541 (1036)
Q Consensus 462 ~~~l~~~~~~l~e~l~~~~~~~~eee~~~~e~~~~q~kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le 541 (1036)
.++.--.+....+..++.++..+..+++........+. ..+..|+
T Consensus 81 -----------------------g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~------------~~l~~l~ 125 (221)
T PF04012_consen 81 -----------------------GREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLK------------EQLEELE 125 (221)
T ss_pred -----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----hccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--
Q 001657 542 EEKRIVQQERDRLLAEIENL-----AANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL-- 614 (1036)
Q Consensus 542 ~ei~~lqkErd~Ll~~l~~~-----~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L-- 614 (1036)
.++..++.+++.|....... -........ -......+..++..+..+..+-.-...+.....-++.++..+
T Consensus 126 ~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~--~~~a~~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~~~~ 203 (221)
T PF04012_consen 126 AKLEELKSKREELKARENAAKAQKKVNEALASFS--VSSAMDSFERMEEKIEEMEARAEASAELADSDQDLEAELEELER 203 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhcC
Q ss_pred -----HHHHHHHHHHHHH
Q 001657 615 -----QAEIQSIKAQKVQ 627 (1036)
Q Consensus 615 -----~~ei~~lk~~kv~ 627 (1036)
+++|..||+.+.+
T Consensus 204 ~~~~~~~~La~LK~~~~~ 221 (221)
T PF04012_consen 204 DSSVSEDELAALKAKQGQ 221 (221)
T ss_pred CCcchHHHHHHHHhHccC
No 379
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=58.40 E-value=5.1 Score=48.84 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=21.9
Q ss_pred chhhHHHhhcCCC--ccEeeeccCCCCccccc
Q 001657 69 VAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 69 v~plV~~~l~G~N--~ti~aYGqTgSGKTyTm 98 (1036)
|+..+...+.|.. ..++.+||+|||||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 3445556555553 45778999999999998
No 380
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=58.36 E-value=4.1e+02 Score=32.18 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 001657 596 SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ---------LQNKIKQEAEQFRQWKASRE 647 (1036)
Q Consensus 596 ~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~---------L~rkmk~e~~~~~~~~~~~e 647 (1036)
....|...+.++..++..|-++|-+.+..+.. |++-+++.++.|+....+.+
T Consensus 100 k~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 100 KIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34566677888888888888888888776644 35555555555555544443
No 381
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=58.00 E-value=4.5e+02 Score=32.57 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=11.8
Q ss_pred eeeccCCCCccccc
Q 001657 85 LAYGQTGSGKTYTM 98 (1036)
Q Consensus 85 ~aYGqTgSGKTyTm 98 (1036)
+-+|+||||||-.|
T Consensus 26 vitG~nGaGKS~ll 39 (563)
T TIGR00634 26 VLTGETGAGKSMII 39 (563)
T ss_pred EEECCCCCCHHHHH
Confidence 45799999998776
No 382
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.77 E-value=53 Score=35.52 Aligned_cols=47 Identities=28% Similarity=0.431 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 642 WKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRL 692 (1036)
Q Consensus 642 ~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krL 692 (1036)
...+.++.|..|+.. +++. ..|+..|......|++|++|+.-++..|
T Consensus 247 ~ileKdkqisnLKad---~e~~-~~~ek~Hke~v~qL~~k~~~~lk~~a~l 293 (305)
T KOG3990|consen 247 LILEKDKQISNLKAD---KEYQ-KELEKKHKERVQQLQKKKEESLKAIAQL 293 (305)
T ss_pred HHHhhhhhhhccCcc---hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666654 3333 4555667777777899998876555444
No 383
>PTZ00424 helicase 45; Provisional
Probab=57.77 E-value=5.3 Score=46.85 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=20.3
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456667889884 46789999999875
No 384
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=57.76 E-value=3.3e+02 Score=30.96 Aligned_cols=27 Identities=22% Similarity=0.232 Sum_probs=14.3
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHH
Q 001657 565 SDGHTQKMQDGHTLKLKALEAQILELK 591 (1036)
Q Consensus 565 ~~~~~~Kl~~~~~~~l~~LE~el~~L~ 591 (1036)
.|+-..-|.+++++..+++|=++.+-+
T Consensus 137 GDDlt~~LEKEReqL~QQiEFe~~e~k 163 (561)
T KOG1103|consen 137 GDDLTAHLEKEREQLQQQIEFEIEEKK 163 (561)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666665555554444433
No 385
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.72 E-value=64 Score=35.87 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=47.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhcC
Q 001657 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDMSG 930 (1036)
Q Consensus 861 ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~~~ 930 (1036)
+......-+..+..++..+. .++..+..|+.+.|-...+...++.+....+.+++.-.|..+=.|+.
T Consensus 130 ~~~~~~~~~~~l~~~va~v~---q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~ 196 (300)
T KOG2629|consen 130 QFDKAAKSLNALMDEVAQVS---QLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSN 196 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Confidence 33344444444444444444 33444555888888888888889999999999999999988887776
No 386
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=57.56 E-value=4.1e+02 Score=31.94 Aligned_cols=20 Identities=35% Similarity=0.240 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001657 678 LQRKTEEAAIATKRLKELLE 697 (1036)
Q Consensus 678 LqRK~eE~~a~~krLke~Le 697 (1036)
++..+.++.+.+...+..|+
T Consensus 296 ~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 296 LNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666654
No 387
>PRK09183 transposase/IS protein; Provisional
Probab=57.45 E-value=4.1 Score=45.07 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.1
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
.|+-||++|+||||.+
T Consensus 104 ~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 104 NIVLLGPSGVGKTHLA 119 (259)
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4667999999999998
No 388
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=57.31 E-value=5e+02 Score=32.86 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.8
Q ss_pred CCCccEeeeccCCCCccccc
Q 001657 79 GYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 79 G~N~ti~aYGqTgSGKTyTm 98 (1036)
-.+.+|+.-|.+|+|||-+-
T Consensus 142 k~SQSIIVSGESGAGKTEst 161 (1259)
T KOG0163|consen 142 KLSQSIIVSGESGAGKTEST 161 (1259)
T ss_pred hhcccEEEecCCCCCcchhH
Confidence 55788999999999999663
No 389
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.13 E-value=1.6e+02 Score=27.96 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=10.9
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHH
Q 001657 799 ASLENMLNMSSKALVEMASQLSEA 822 (1036)
Q Consensus 799 ~~Lq~~~~~~~~~~~~l~~ql~~~ 822 (1036)
..+++.+.....++..+..++.+.
T Consensus 13 q~~q~~~~~l~~q~~~le~~~~E~ 36 (110)
T TIGR02338 13 QQLQQQLQAVATQKQQVEAQLKEA 36 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 390
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=57.11 E-value=4.2e+02 Score=31.96 Aligned_cols=90 Identities=30% Similarity=0.313 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCch
Q 001657 643 KASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNE 722 (1036)
Q Consensus 643 ~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~Le~ek~~r~k~e~~~~~~~~~~~~~~~ 722 (1036)
.....++|.++-+++-+...|+.+|.++ ..-+++|++.......++.+-|.+-+.+.+.
T Consensus 214 ~~s~~eel~~kt~el~~q~Ee~skLlsq----l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~q----------------- 272 (596)
T KOG4360|consen 214 ARSGQEELQSKTKELSRQQEENSKLLSQ----LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQ----------------- 272 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------------
Confidence 3445666677777777777777777653 3347899999999999998888766544322
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 723 KSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1036)
Q Consensus 723 ~~~~~Wl~~ELE~l~~l~E~~~~~~~q~e~r~k~~~El~~Lk~ 765 (1036)
+..|+ +|..+.++..++.-..-++||..||.
T Consensus 273 ------l~aE~------~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 273 ------LTAEL------EELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred ------HHHHH------HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333 33445555556666666778877775
No 391
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=57.03 E-value=12 Score=45.82 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.6
Q ss_pred cCCCcEEEcCceEEEcCCHHHHHHHHHhcccCc
Q 001657 180 SSNGVITLAGSTEVAVNTLQEMAACLEQGSLSR 212 (1036)
Q Consensus 180 ~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R 212 (1036)
..+|.+++.++.+.+..--..++.+|..+.-.|
T Consensus 321 A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 321 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 346778888888888777778888887765444
No 392
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=56.77 E-value=4.4 Score=47.50 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.8
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
++.+|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 678999999999997
No 393
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=56.77 E-value=2.6e+02 Score=29.51 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=31.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001657 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1036)
Q Consensus 603 ~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~ 669 (1036)
.+.+.|..+.+|+..|.+++.+...+..+++. ..++|.+|+.....-..++..++.
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~-----------~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEA-----------KDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776666554333222 225555555555554444444443
No 394
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=56.46 E-value=1.7e+02 Score=33.18 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (1036)
Q Consensus 578 ~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkm 632 (1036)
..|.++| +.-++.--.-++|.-.|..+--+|+.|.+.|..+.....++.|..
T Consensus 84 ~~l~evE---ekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 84 DSLAEVE---EKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHH---HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 444455555677777788888888888888888887777755444
No 395
>PRK10536 hypothetical protein; Provisional
Probab=56.46 E-value=6.2 Score=43.55 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.9
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
+..|+..|++||||||..
T Consensus 74 ~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 74 KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 358999999999999985
No 396
>PRK12704 phosphodiesterase; Provisional
Probab=56.41 E-value=4.6e+02 Score=32.21 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=16.9
Q ss_pred eecccccceeeeeecccCcchhhhhhhccchhhhccCCCch
Q 001657 990 WKRSHHQWLLQFKWKWQKPWKLSEWIKHSDETIMKSRPRPQ 1030 (1036)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1036)
.-.+||.. -.|=.+-.+|=+-...+-..||-.+
T Consensus 402 aI~~HHe~--------~~~~~~~a~IV~~ADaLsa~Rpgar 434 (520)
T PRK12704 402 AIAAHHGD--------EEPTSIEAVLVAAADAISAARPGAR 434 (520)
T ss_pred HHHHcCCC--------CCCCCHHHHHHHHHHHHhCcCCCCc
Confidence 34567753 2343444555555556666666443
No 397
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=56.12 E-value=5.1 Score=44.26 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.4
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
...|+-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 355788999999999987
No 398
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=55.94 E-value=4.5e+02 Score=31.87 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001657 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGR 658 (1036)
Q Consensus 613 ~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~r 658 (1036)
.+...|.+++.+...+..+...+.-.. ....+++..|+..++
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v----~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDV----IATKREIAQLEEQKE 292 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHH----HHHHHHHHHHHHHHH
Confidence 444555555555555555444443333 333445555555543
No 399
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.76 E-value=6.2 Score=48.63 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCccEeeeccCCCCcccccccCCC-------C--C-----CccccHHHHHHHHHHHHHhhc
Q 001657 79 GYNATVLAYGQTGSGKTYTMGTGLR-------E--G-----FQTGLIPQVMNALFNKIETLR 126 (1036)
Q Consensus 79 G~N~ti~aYGqTgSGKTyTm~G~~~-------~--~-----~~~Giipr~~~~LF~~i~~~~ 126 (1036)
-..+.|+.||+.|+||||..+.-.. + | ..-|--...+++||.+....+
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAK 760 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccC
Confidence 4466799999999999998632111 0 0 123666788999999887644
No 400
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.58 E-value=3.3e+02 Score=30.22 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=40.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 490 EWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTE----ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 490 ~~e~~~~q~kl~~El~eL~k~Le~kE~~~~~~~~~~~~----~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
..++.....+++.++..|..+++++++.+.+.. .+.. -+.+.|.-|...+-.=.+.++..++...+++.++
T Consensus 69 k~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~-~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel 143 (258)
T PF15397_consen 69 KAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQ-EELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777777775544 2222 1234466555544444444544455555555444
No 401
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=55.17 E-value=5.1 Score=39.29 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=30.6
Q ss_pred cEeee-ccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEE-----EeehhhhhhhhhhhccC
Q 001657 83 TVLAY-GQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQL-----HVSFIEILKEEVRDLLD 150 (1036)
Q Consensus 83 ti~aY-GqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v-----~vS~~EIynE~v~DLL~ 150 (1036)
.|+++ |+||+||||+- ..+.+.||...-...--..|.. .-+.+.-|.+++.+.+.
T Consensus 54 LVlSfHG~tGtGKn~v~-------------~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~ 114 (127)
T PF06309_consen 54 LVLSFHGWTGTGKNFVS-------------RLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIR 114 (127)
T ss_pred EEEEeecCCCCcHHHHH-------------HHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHHH
Confidence 46655 99999999986 4566667754221100001111 12345667777666653
No 402
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.16 E-value=4.5 Score=43.81 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=62.3
Q ss_pred ceEEEEEeCCCCcchhccCC---------ceEEEEeCCCc--eeee-c---ceeEEcceeeCCCCCCccccccccchhhH
Q 001657 9 SVKVAVHVRPLIGDERAQGC---------KECVAVTHGNP--QVQI-G---THSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (1036)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~---------~~~v~v~~~~~--~v~~-~---~~~F~FD~Vf~~~~t~q~~vy~~~v~plV 73 (1036)
.-.-+|||-....+|....+ ...|.|.|.+. .+.+ + .-..+|..|=+-+. +-++|-+.+--|+.
T Consensus 98 gsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~-qkqeireavelplt 176 (408)
T KOG0727|consen 98 GSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDV-QKQEIREAVELPLT 176 (408)
T ss_pred CCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchh-hHHHHHHHHhccch
Confidence 34568899888777753221 11222222211 1111 1 01233444433332 23455555555665
Q ss_pred HHhhc---CCC--ccEeeeccCCCCccccccc--C-----C----CC---CCccccHHHHHHHHHHHHHhhccc
Q 001657 74 DGLFQ---GYN--ATVLAYGQTGSGKTYTMGT--G-----L----RE---GFQTGLIPQVMNALFNKIETLRHQ 128 (1036)
Q Consensus 74 ~~~l~---G~N--~ti~aYGqTgSGKTyTm~G--~-----~----~~---~~~~Giipr~~~~LF~~i~~~~~~ 128 (1036)
..-+- |.+ -.|+.||+.|+|||...-. + | ++ ...-|==||.++++|.......+.
T Consensus 177 ~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenaps 250 (408)
T KOG0727|consen 177 HADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPS 250 (408)
T ss_pred HHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCc
Confidence 54431 553 4599999999999854310 0 0 00 112366699999999987664443
No 403
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=55.14 E-value=3.3e+02 Score=30.12 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001657 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (1036)
Q Consensus 535 ~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L 614 (1036)
.+...|...|..+......+...+..+..+.. .. -.......+.+-+.-|..|+ .+ .+...+...+.++...
T Consensus 87 ~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~-~~--~~~~l~~~l~ea~~mL~emr----~r-~f~~~~~~Ae~El~~A 158 (264)
T PF06008_consen 87 QRAQDLEQFIQNLQDNIQELIEQVESLNENGD-QL--PSEDLQRALAEAQRMLEEMR----KR-DFTPQRQNAEDELKEA 158 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccC-CC--CHHHHHHHHHHHHHHHHHHH----hc-cchhHHHHHHHHHHHH
Confidence 56677888888888888888888887743100 00 01222333444443333333 33 2666666677666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 001657 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM---VLQRKTEEAAIATKR 691 (1036)
Q Consensus 615 ~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~---vLqRK~eE~~a~~kr 691 (1036)
+.-+.++++.-.......+.=.+..+.+.....-.+..|+.-+.....-+......+..-.. -+.+|..++......
T Consensus 159 ~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~ 238 (264)
T PF06008_consen 159 EDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNE 238 (264)
T ss_pred HHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665554333333333334445555555556666666666544443333332222222 244555555555444
Q ss_pred HHHHHH
Q 001657 692 LKELLE 697 (1036)
Q Consensus 692 Lke~Le 697 (1036)
..+.|.
T Consensus 239 ~~~~L~ 244 (264)
T PF06008_consen 239 VSETLK 244 (264)
T ss_pred HHHHHH
Confidence 444443
No 404
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=54.97 E-value=5 Score=34.32 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.8
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999877
No 405
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=54.92 E-value=1.3e+02 Score=29.60 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCCccccccCChhHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 001657 742 VRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSE 821 (1036)
Q Consensus 742 ~~~~~~~q~e~r~k~~~El~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~qi~~Lq~~~~~~~~~~~~l~~ql~~ 821 (1036)
=..-++.|+|++..++.++..|+..++.... .|.......+....|..+.++.-+-+|+..+..++.++-+++-.|++
T Consensus 6 WktRYEtQ~E~N~QLekqi~~l~~kiek~r~--n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQ 83 (129)
T PF15372_consen 6 WKTRYETQLELNDQLEKQIIILREKIEKIRG--NPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQ 83 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999987765443 22222222233344555555666666666666666666666555554
Q ss_pred H
Q 001657 822 A 822 (1036)
Q Consensus 822 ~ 822 (1036)
-
T Consensus 84 E 84 (129)
T PF15372_consen 84 E 84 (129)
T ss_pred H
Confidence 4
No 406
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=54.89 E-value=6.7 Score=47.12 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=19.8
Q ss_pred hHHHhhcCCCccEeeeccCCCCccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.+..+++|.| |++.++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 4556678887 777889999999764
No 407
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.73 E-value=2.4e+02 Score=28.35 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=39.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001657 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM 676 (1036)
Q Consensus 597 ~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~~~~~~q~~ 676 (1036)
+..+...-.+++..+..|...++.++.+...+.+.+- ........+.+++..+....+.-..|+.++....+.-+.
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~----~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t 129 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA----SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT 129 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333332 222233334444444555555555566666654333333
Q ss_pred H----HHHHHHHHH
Q 001657 677 V----LQRKTEEAA 686 (1036)
Q Consensus 677 v----LqRK~eE~~ 686 (1036)
. ++||-.|..
T Consensus 130 q~~~e~rkke~E~~ 143 (151)
T PF11559_consen 130 QYEHELRKKEREIE 143 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 3 566655554
No 408
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=54.69 E-value=5.6 Score=46.41 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.3
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
...|.-.||||.|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 555666799999999998
No 409
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=54.54 E-value=5.4e+02 Score=32.41 Aligned_cols=89 Identities=7% Similarity=-0.013 Sum_probs=44.3
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhhhccchHHHHHH
Q 001657 850 YMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQ-----AVTIALASSASQGSSWRSSKHF 924 (1036)
Q Consensus 850 ~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~-----~~~~l~~~~~~~~~q~~~~k~~ 924 (1036)
.++...-.+...|..+..+|.+....+.+..++.+-|-..|......+...-. --.++.-...++..+-++++..
T Consensus 379 ~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~~kl~P~~~~V~~~s~~l~~~ 458 (632)
T PF14817_consen 379 EAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFVQRKLVPQFEAVAPQSQELRDC 458 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHHhcccCCcHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444443322222111 1144555555666677778887
Q ss_pred HhhhcCCCCCcccc
Q 001657 925 ADDMSGPLSPVSLP 938 (1036)
Q Consensus 925 ~~e~~~~~~~~~~~ 938 (1036)
+++=...|+..+++
T Consensus 459 ie~E~~~f~~~~l~ 472 (632)
T PF14817_consen 459 IEREVRAFQAIPLN 472 (632)
T ss_pred HHHHHHhcccccHH
Confidence 77766666666655
No 410
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=54.48 E-value=4.3e+02 Score=31.27 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=14.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001657 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (1036)
Q Consensus 600 L~K~K~K~E~~~~~L~~ei~~lk~~kv~L 628 (1036)
|...+.+++.+-.+|-..+.+....++++
T Consensus 195 L~q~lk~le~~~~~l~~~l~e~~~~~~~~ 223 (447)
T KOG2751|consen 195 LLQQLEELEKEEAELDHQLKELEFKAERL 223 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555554
No 411
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=54.10 E-value=1.1e+02 Score=37.68 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=16.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQRKEL 893 (1036)
Q Consensus 861 ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el 893 (1036)
++.++...+.++++.+.++..++.+++.++..+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555555555554444433
No 412
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=54.02 E-value=69 Score=30.59 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=41.7
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 851 MFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQ 902 (1036)
Q Consensus 851 l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~ 902 (1036)
+|..+...+.++..+-.++.+++..+.+|.+.-..|..|+..|-..+.+.+.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555556888888888899999999988888999999888888777766
No 413
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=53.45 E-value=10 Score=43.80 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.3
Q ss_pred CCccEeeeccCCCCccccc
Q 001657 80 YNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 80 ~N~ti~aYGqTgSGKTyTm 98 (1036)
.+..|+-.|++|||||+..
T Consensus 77 ~r~il~L~GPPGsGKStla 95 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566788899999999764
No 414
>PRK11281 hypothetical protein; Provisional
Probab=53.20 E-value=7.3e+02 Score=33.54 Aligned_cols=26 Identities=4% Similarity=0.148 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 533 FGKKIMELEEEKRIVQQERDRLLAEI 558 (1036)
Q Consensus 533 ~e~ki~~Le~ei~~lqkErd~Ll~~l 558 (1036)
+|.++.+++++....+.....+..++
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqL 151 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQL 151 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333333
No 415
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=53.14 E-value=5.6 Score=41.97 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.0
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
...||..|+.|||||+++
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 456888899999999887
No 416
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=53.00 E-value=5.4 Score=43.10 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.3
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
.|.-.|++|||||+-|
T Consensus 33 ~vaI~GpSGSGKSTLL 48 (226)
T COG1136 33 FVAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999986
No 417
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=52.82 E-value=7.4 Score=46.30 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=20.7
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..+..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34566778877 888899999999875
No 418
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=52.60 E-value=7 Score=45.33 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=29.4
Q ss_pred EcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCcccc
Q 001657 49 TFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYT 97 (1036)
Q Consensus 49 ~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyT 97 (1036)
+||.|+| |+.+... ..|+=.-+-.|.-.+.+-|||.|+|||..
T Consensus 22 ~lde~vG-----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG-----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC-----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4566663 4455443 34554555568888889999999999975
No 419
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=52.09 E-value=8.8 Score=46.18 Aligned_cols=17 Identities=53% Similarity=0.751 Sum_probs=15.5
Q ss_pred ccEeeeccCCCCccccc
Q 001657 82 ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm 98 (1036)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56899999999999988
No 420
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.96 E-value=3.5e+02 Score=35.07 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=5.3
Q ss_pred CCCCCCHHHHHHHH
Q 001657 344 SPADINAEESLNTL 357 (1036)
Q Consensus 344 SP~~~~~~eTl~TL 357 (1036)
.|....-.-+|.|+
T Consensus 334 GpN~gGKTt~lkti 347 (782)
T PRK00409 334 GPNTGGKTVTLKTL 347 (782)
T ss_pred CCCCCCcHHHHHHH
Confidence 34333333334444
No 421
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=51.81 E-value=4 Score=47.18 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=30.3
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..|.|+.|-|. +++ ..-++..+.+-.-+.|+.+|.+||||||++
T Consensus 12 ~~~pf~~ivGq-----~~~----k~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ-----EEM----KLALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh-----HHH----HHHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 47899998864 332 334444444433356889999999999987
No 422
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=51.72 E-value=7.1 Score=43.57 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=20.1
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
-+++.++.. +.-|+-+|++|||||-++
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 344555543 667889999999999887
No 423
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.57 E-value=5.3 Score=46.50 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=20.8
Q ss_pred chhhHHHhhcC-CCccEeeeccCCCCccccc
Q 001657 69 VAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 69 v~plV~~~l~G-~N~ti~aYGqTgSGKTyTm 98 (1036)
+..+...+-.| ...+++-||+.|+|||++.
T Consensus 25 ~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 25 VTAISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred HHHHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 33444444444 3456789999999999887
No 424
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=51.54 E-value=5.7 Score=46.29 Aligned_cols=34 Identities=15% Similarity=0.395 Sum_probs=24.7
Q ss_pred ccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 61 SSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 61 q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
|..+|+.++..+ .......+|..|+.|+||||.+
T Consensus 6 Q~~~~~~v~~~~----~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 6 QRRVFDTVIEAI----ENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHH----HccCCcEEEEEcCCCCChhHHH
Confidence 667777654433 3345567788999999999997
No 425
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.46 E-value=82 Score=30.09 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 001657 385 RQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (1036)
Q Consensus 385 r~ei~~Lq~eL~~~~~~~~~~e~~~L~eki~~L~~e~~~L~~eL~~~~~~la~~Ee 440 (1036)
-..+..+...+... ..++..|+..+..|.+||..|..+.+.++.++...+.
T Consensus 7 ~~~l~~le~~l~~l-----~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQL-----LEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555333 5667778888999999999999999999998886655
No 426
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=51.43 E-value=6.1 Score=45.50 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=27.9
Q ss_pred ccEeeeccCCCCcccccccCCCCCCccccHHHHHHHHHHHHHhhcccceEEEEeehhhhhhh
Q 001657 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE 143 (1036)
+.|+-||.+||||||++ ..+|+... .-.|+++++|-|.=
T Consensus 31 S~~~iyG~sgTGKT~~~-----------------r~~l~~~n------~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV-----------------RQLLRKLN------LENVWLNCVECFTY 69 (438)
T ss_pred eeEEEeccCCCchhHHH-----------------HHHHhhcC------CcceeeehHHhccH
Confidence 34688999999999998 23454431 23588999998753
No 427
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.31 E-value=12 Score=41.25 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccccchhhHHHhh-cCCCccEeeeccCCCCccccc--------ccCCCCCCcccc
Q 001657 65 FGECVAPLVDGLF-QGYNATVLAYGQTGSGKTYTM--------GTGLREGFQTGL 110 (1036)
Q Consensus 65 y~~~v~plV~~~l-~G~N~ti~aYGqTgSGKTyTm--------~G~~~~~~~~Gi 110 (1036)
|+..-..+|.... +||.--|+|.|.||-|||+.| .+.+.++..+++
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V 79 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNV 79 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCc
No 428
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=51.28 E-value=37 Score=39.22 Aligned_cols=84 Identities=11% Similarity=0.094 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHh
Q 001657 847 LLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFAD 926 (1036)
Q Consensus 847 ~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~ 926 (1036)
.++.....+...+..+.+++.++..++.++.+......+++.+.......+.-++..+.-|.....--+.++.++.+.+.
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Confidence 33334444444444566666666666666666666666666666666666666666666666666666778888888777
Q ss_pred hhcC
Q 001657 927 DMSG 930 (1036)
Q Consensus 927 e~~~ 930 (1036)
-+-|
T Consensus 309 ~l~G 312 (344)
T PF12777_consen 309 NLVG 312 (344)
T ss_dssp HHHH
T ss_pred ccHH
Confidence 7755
No 429
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=51.22 E-value=6.4 Score=48.26 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=31.5
Q ss_pred eeEEcceeeCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 46 ~~F~FD~Vf~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
+..+|+.+++.+. .+..+...++.+....|+-||++|+|||+.-
T Consensus 60 rp~~f~~iiGqs~---------~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQEE---------GIKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcHH---------HHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4567888886431 2344555566677788999999999998765
No 430
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.07 E-value=2.6e+02 Score=30.08 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Q 001657 491 WEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQ 570 (1036)
Q Consensus 491 ~e~~~~q~kl~~El~eL~k~Le~kE~~~~~~~~~~~~~~k~~~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~ 570 (1036)
.+....-..-..|...|...+.+-+.++ ..--.+++.-+....-+++++..++.|.+.+...++-++++.++...
T Consensus 47 ~efar~lS~~~~e~e~l~~~l~etene~-----~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~ke 121 (246)
T KOG4657|consen 47 VEFARALSQSQVELENLKADLRETENEL-----VKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKE 121 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 571 KMQDGHTLKLKALEAQILELKKKQESQVEL 600 (1036)
Q Consensus 571 Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L 600 (1036)
-++..+....+..+......+++-+.+..+
T Consensus 122 iIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a 151 (246)
T KOG4657|consen 122 IISQKRQALSKAKENAGKRKQDSADIHEAA 151 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccHHHH
No 431
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=50.96 E-value=7 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.9
Q ss_pred hcCCCccEeeeccCCCCccccc
Q 001657 77 FQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 77 l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
-.|.-..++-||++|+|||++.
T Consensus 48 ~~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 48 KADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred hcCCCceEEEECCCCCCHHHHH
Confidence 3455557888999999999887
No 432
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=50.83 E-value=6.4 Score=43.10 Aligned_cols=18 Identities=44% Similarity=0.689 Sum_probs=13.7
Q ss_pred CccEee-eccCCCCccccc
Q 001657 81 NATVLA-YGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~a-YGqTgSGKTyTm 98 (1036)
.+.+++ .|++|||||+||
T Consensus 26 ~gef~vliGpSGsGKTTtL 44 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTL 44 (309)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 344443 499999999998
No 433
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.74 E-value=8.2 Score=45.82 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=19.2
Q ss_pred hHHHhhcCCCccEeeeccCCCCccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.+..++.|.| |++.++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 3455678887 566779999999875
No 434
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=50.64 E-value=3.9e+02 Score=29.64 Aligned_cols=10 Identities=0% Similarity=-0.406 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 001657 742 VRFKYEKQSQ 751 (1036)
Q Consensus 742 ~~~~~~~q~e 751 (1036)
|.+.+..++.
T Consensus 200 ALgyvahlv~ 209 (302)
T PF10186_consen 200 ALGYVAHLVS 209 (302)
T ss_pred HHHHHHHHHH
Confidence 3344333333
No 435
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=50.60 E-value=6.5 Score=42.45 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=16.4
Q ss_pred CccEeeeccCCCCcccccc
Q 001657 81 NATVLAYGQTGSGKTYTMG 99 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm~ 99 (1036)
...++-||+.|+|||++..
T Consensus 12 ~~~~liyG~~G~GKtt~a~ 30 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIK 30 (220)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4569999999999999873
No 436
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=50.53 E-value=1e+02 Score=33.21 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=30.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 862 LWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRM 899 (1036)
Q Consensus 862 l~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e 899 (1036)
-.-++.+..|++.++.||+++-++|+.|++-|..+-+.
T Consensus 85 RDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 85 RDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINES 122 (292)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999998887765543
No 437
>PF13173 AAA_14: AAA domain
Probab=50.41 E-value=6.9 Score=38.12 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.9
Q ss_pred ccEeeeccCCCCccccc
Q 001657 82 ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm 98 (1036)
-.++-+|+.|+|||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLL 19 (128)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35788999999999988
No 438
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.37 E-value=2.2e+02 Score=26.75 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHH
Q 001657 798 IASLENMLNMSSKALVEMASQLSEA 822 (1036)
Q Consensus 798 i~~Lq~~~~~~~~~~~~l~~ql~~~ 822 (1036)
+..|+..++....++..+..++.+.
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~ 32 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555444444
No 439
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=50.33 E-value=6.8 Score=46.41 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.7
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
+.-++.+|+||||||+.|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 557889999999999877
No 440
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.24 E-value=3e+02 Score=29.03 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 001657 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERH 665 (1036)
Q Consensus 605 ~K~E~~~~~L~~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~ 665 (1036)
...+..+..|+..|+..+..+..- ..+..+-.++.+|+++......++.
T Consensus 79 ~~~~~~i~~l~~~i~~~~~~r~~~------------~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 79 EELEKKIEELEEKIEEAKKGREES------------EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444331 2233344444555555444444444
No 441
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=50.08 E-value=7.3 Score=46.34 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=24.2
Q ss_pred CCCCceeEEEeecCCCCCCHHHHHHHHHHHHH--hhcccCccc
Q 001657 331 LGGNSKTVMIACISPADINAEESLNTLKYANR--ARNIQNKPV 371 (1036)
Q Consensus 331 LgGns~t~mI~~vSP~~~~~~eTl~TL~fa~r--ar~Ik~kpv 371 (1036)
+.-..+..+|||++..+.+ +..|.+|-+ -.-|...|-
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecCC
Confidence 4557899999999998864 345655543 334445554
No 442
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=49.58 E-value=6.7 Score=41.97 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=12.4
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
|.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 443
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.56 E-value=8 Score=43.47 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=19.1
Q ss_pred HhhcCCCccEeeeccCCCCccccc
Q 001657 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 75 ~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..+.--+..|-.||+|++|||.++
T Consensus 187 ~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 187 SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHhCCCceEEEEEeCCCCCHHHHH
Confidence 444455677889999999999987
No 444
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=49.39 E-value=7.2 Score=45.38 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.6
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
...|+-||++|+|||++.
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 445999999999999887
No 445
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=49.38 E-value=5.2e+02 Score=30.74 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHh-----------------hccccccchhhhhhHHHHHHHHHHHHHHHH
Q 001657 548 QQERDRLLAEIENL-----------------AANSDGHTQKMQDGHTLKLKALEAQILELK 591 (1036)
Q Consensus 548 qkErd~Ll~~l~~~-----------------~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~ 591 (1036)
-.||++|+..|+.. ..+..+...|-.+.-...+++|..++++|.
T Consensus 102 p~er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~~~~lekq~e~qkeLi~QLk~Ql~dLE 162 (621)
T KOG3759|consen 102 PSERLKLLRDLEDFAFKGCPDMNELQRLRSESESGNDVLEKQNERQKELIKQLKEQLEDLE 162 (621)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccccccccchhhhhhcchHHHHHHHHHHHHHHHH
Confidence 35677777777764 112333444555556667777777777776
No 446
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=49.26 E-value=8 Score=51.46 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=0.0
Q ss_pred ccchhhHHHhhcCCCccEeeeccCCCCcccccccCCCCCCccccHHHHHH
Q 001657 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMN 116 (1036)
Q Consensus 67 ~~v~plV~~~l~G~N~ti~aYGqTgSGKTyTm~G~~~~~~~~Giipr~~~ 116 (1036)
..+..++..+-+|...+++. .+||||||+|| .+++.+++.
T Consensus 420 ~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~ta---------i~li~~L~~ 459 (1123)
T PRK11448 420 DAIQAVEKAIVEGQREILLA-MATGTGKTRTA---------IALMYRLLK 459 (1123)
T ss_pred HHHHHHHHHHHhccCCeEEE-eCCCCCHHHHH---------HHHHHHHHh
No 447
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=49.22 E-value=2.3e+02 Score=34.45 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=36.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001657 569 TQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (1036)
Q Consensus 569 ~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~ 627 (1036)
++-+++..-.+..+|.-+-.-|+-+.... .-+|.|+|.+|++|++||...|+.-.+
T Consensus 320 LNiVKNDLIakVDeL~~E~~vLrgElea~---kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 320 LNIVKNDLIAKVDELTCEKDVLRGELEAV---KQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHHHhhccHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677776666666554432 236778999999999888655544433
No 448
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.02 E-value=6.7 Score=44.84 Aligned_cols=120 Identities=20% Similarity=0.290 Sum_probs=62.9
Q ss_pred CceEEEEEeCCCCcchh-ccCCceEEE--------EeCCC--ceeee----cceeEEcceeeCCCCCCccccccccchhh
Q 001657 8 CSVKVAVHVRPLIGDER-AQGCKECVA--------VTHGN--PQVQI----GTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (1036)
Q Consensus 8 ~~v~V~vRvRP~~~~e~-~~~~~~~v~--------v~~~~--~~v~~----~~~~F~FD~Vf~~~~t~q~~vy~~~v~pl 72 (1036)
+.-+.+|++.|....+. ..|+..++. +.|.. |.|.. ..-.-+|+.|=|-+ .|-+++.+.+.-|+
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~-~Qi~EirE~VELPL 171 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLD-EQIQEIREVVELPL 171 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHH-HHHHHHHHHhcccc
Confidence 34577888888877664 344433221 11111 11110 01123334333321 23455666665666
Q ss_pred HH-Hhhc--CCC--ccEeeeccCCCCccccc--------------ccCCCCCCccccHHHHHHHHHHHHHhhccc
Q 001657 73 VD-GLFQ--GYN--ATVLAYGQTGSGKTYTM--------------GTGLREGFQTGLIPQVMNALFNKIETLRHQ 128 (1036)
Q Consensus 73 V~-~~l~--G~N--~ti~aYGqTgSGKTyTm--------------~G~~~~~~~~Giipr~~~~LF~~i~~~~~~ 128 (1036)
.. .+|. |.. -.|+.||+.|+|||-.- .|+---...-|==+|.+++||.......+.
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPs 246 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPS 246 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCe
Confidence 54 3343 554 45999999999998653 110000011245589999999988765443
No 449
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=48.97 E-value=5.9e+02 Score=31.25 Aligned_cols=14 Identities=14% Similarity=0.181 Sum_probs=7.8
Q ss_pred cccCcchhhhhhhc
Q 001657 1004 KWQKPWKLSEWIKH 1017 (1036)
Q Consensus 1004 ~~~~~~~~~~~~~~ 1017 (1036)
+|.-|-.+...|.+
T Consensus 386 ~~~~~~~V~~aI~~ 399 (514)
T TIGR03319 386 KYKESPEVVNAIAA 399 (514)
T ss_pred HcCCCHHHHHHHHH
Confidence 34456666666543
No 450
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=48.96 E-value=4.9 Score=45.06 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=19.1
Q ss_pred cCCCccEeeeccCCCCccccc
Q 001657 78 QGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 78 ~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999999876
No 451
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.94 E-value=18 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=19.6
Q ss_pred CCccccHHHHHHHHHHHHHhhcc
Q 001657 105 GFQTGLIPQVMNALFNKIETLRH 127 (1036)
Q Consensus 105 ~~~~Giipr~~~~LF~~i~~~~~ 127 (1036)
+...|++.|++..|...+..+..
T Consensus 784 GDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 784 GDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred CCccccHHHHHHHHHHHhhcccC
Confidence 45679999999999999988765
No 452
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=48.59 E-value=4.6e+02 Score=29.88 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=7.5
Q ss_pred HHHHHHHHHhHHHHHH
Q 001657 597 QVELLKQKHKSDEAAK 612 (1036)
Q Consensus 597 ~~~L~K~K~K~E~~~~ 612 (1036)
..+|.|.+..+.++|.
T Consensus 141 t~~LEKEReqL~QQiE 156 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIE 156 (561)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555544444443
No 453
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=48.47 E-value=9.9 Score=45.65 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=20.2
Q ss_pred hHHHhhcCCCccEeeeccCCCCccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.+..+++|.| |++.++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4566778887 777889999999875
No 454
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.46 E-value=86 Score=30.11 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=40.5
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 851 MFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMR 900 (1036)
Q Consensus 851 l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~ 900 (1036)
+|..+...+.++..+-.++.+++..+.+|.+.-..|+.|++.|-..+.+.
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566668888888899999999999999999999998888777754
No 455
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=48.35 E-value=8.7 Score=43.32 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.0
Q ss_pred cCCCccEeeeccCCCCccccc
Q 001657 78 QGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 78 ~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 454455888999999999887
No 456
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=48.28 E-value=9.2 Score=43.47 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=19.8
Q ss_pred hhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 70 ~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.+++..++.+. ..|+-.|+||||||++|
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 34455555443 56677799999999987
No 457
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.25 E-value=2.1e+02 Score=32.71 Aligned_cols=98 Identities=10% Similarity=0.079 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 001657 795 MERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKE 874 (1036)
Q Consensus 795 ~~qi~~Lq~~~~~~~~~~~~l~~ql~~~e~r~~~~~~k~r~~~i~s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~ 874 (1036)
+.-+..|..++..++.+...|+.++|.+..+++-..++..-...-++++|...-.-|.++ +-+.-+.-.-.+.
T Consensus 245 ~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~kq-------~l~~~A~d~aieD 317 (365)
T KOG2391|consen 245 NIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPLYKQ-------ILECYALDLAIED 317 (365)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchHHHH-------HHHhhhhhhHHHH
Confidence 333456667777777777777878887765555455555545556666666555555443 2222233233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 875 QLNDLVALLKQSEAQRKELVKQQRM 899 (1036)
Q Consensus 875 ~~~el~~~~~~~~~e~~el~~~l~e 899 (1036)
-+--|.+-+++-....+.+.+..+.
T Consensus 318 ~i~~L~~~~r~G~i~l~~yLr~VR~ 342 (365)
T KOG2391|consen 318 AIYSLGKSLRDGVIDLDQYLRHVRL 342 (365)
T ss_pred HHHHHHHHHhcCeeeHHHHHHHHHH
Confidence 5556667777777777777766553
No 458
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.24 E-value=1.3e+02 Score=25.75 Aligned_cols=43 Identities=5% Similarity=-0.054 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHH
Q 001657 878 DLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRS 920 (1036)
Q Consensus 878 el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~ 920 (1036)
.+.+.|++...-+-.+.+.|.+.|..+..|......+..++++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666665554444444433
No 459
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=48.10 E-value=2.5e+02 Score=36.01 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001657 869 IKEIKEQLNDLVALLK---QSEAQRKELVKQQRMREQAVTIALASS 911 (1036)
Q Consensus 869 ~~E~~~~~~el~~~~~---~~~~e~~el~~~l~e~E~~~~~l~~~~ 911 (1036)
+..+++++..+..++. ..+.+..+|.|+.+-.+..-..|+...
T Consensus 348 ~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~ 393 (726)
T PRK09841 348 RQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQ 393 (726)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333 344455556666666666555554443
No 460
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=47.96 E-value=7.2 Score=40.38 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.5
Q ss_pred ccEeeeccCCCCccccc
Q 001657 82 ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm 98 (1036)
+..+-||++|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45667899999999887
No 461
>PRK04195 replication factor C large subunit; Provisional
Probab=47.91 E-value=9.6 Score=46.18 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=21.8
Q ss_pred chhhHHHhhcCC-CccEeeeccCCCCccccc
Q 001657 69 VAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 69 v~plV~~~l~G~-N~ti~aYGqTgSGKTyTm 98 (1036)
+...+.....|. ...++.||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344444444554 567889999999999887
No 462
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=47.85 E-value=7.3 Score=38.60 Aligned_cols=15 Identities=53% Similarity=0.853 Sum_probs=13.3
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
++-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 567999999999987
No 463
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=47.80 E-value=8.6 Score=40.68 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=18.9
Q ss_pred HHhhcCC---CccEeeeccCCCCccccc
Q 001657 74 DGLFQGY---NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 74 ~~~l~G~---N~ti~aYGqTgSGKTyTm 98 (1036)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455443 677889999999999775
No 464
>PRK04328 hypothetical protein; Provisional
Probab=47.73 E-value=11 Score=41.41 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=22.5
Q ss_pred hhhHHHhhcC---CCccEeeeccCCCCcccc
Q 001657 70 APLVDGLFQG---YNATVLAYGQTGSGKTYT 97 (1036)
Q Consensus 70 ~plV~~~l~G---~N~ti~aYGqTgSGKTyT 97 (1036)
-+-+|.++.| ..++++.+|++|||||..
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 3567888876 588899999999999754
No 465
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=47.65 E-value=4.8e+02 Score=29.86 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=9.4
Q ss_pred HHHHHHHH-HhHHHHHHH
Q 001657 729 LEHELEVS-ANVHEVRFK 745 (1036)
Q Consensus 729 l~~ELE~l-~~l~E~~~~ 745 (1036)
|..|++.+ .++.|+.+.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHhch
Confidence 55555555 555555444
No 466
>PF05729 NACHT: NACHT domain
Probab=47.37 E-value=8 Score=38.61 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.3
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
.|+.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4788999999999988
No 467
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=47.37 E-value=4.4e+02 Score=29.27 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 001657 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKK 592 (1036)
Q Consensus 533 ~e~ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~ 592 (1036)
.+.++..|+.++..|........+++.-+....| +-=-+ +.-++..|..+|..|+.
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~EYPv---K~vqIa~L~rqlq~lk~ 134 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HEYPV---KAVQIANLVRQLQQLKD 134 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhH---HHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777776643333 11111 11244555555555553
No 468
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=47.29 E-value=1.6e+02 Score=31.88 Aligned_cols=75 Identities=21% Similarity=0.184 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001657 840 FMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQ 914 (1036)
Q Consensus 840 s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~ 914 (1036)
+-.+.|-..+.|....-..+|||.+.-.-..|++..+++..-...+++.++++|.+...|..-.|+-|-...+++
T Consensus 10 ~eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~Asl 84 (277)
T PF15030_consen 10 SEEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASL 84 (277)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHH
Confidence 445677888899998999999999999999999999999888888999999999999888887776665555554
No 469
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=47.23 E-value=3.4e+02 Score=27.91 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhh
Q 001657 865 KDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASQGSSWRSSKHFADDM 928 (1036)
Q Consensus 865 ~~~k~~E~~~~~~el~~~~~~~~~e~~el~~~l~e~E~~~~~l~~~~~~~~~q~~~~k~~~~e~ 928 (1036)
++.++.-+..+-..|..+...++..+..+...++-+|..++++.-.-+=|++.+.++-..++++
T Consensus 89 lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 89 LQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333333334444444455555556666677777777777776666666666666666554
No 470
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=47.20 E-value=15 Score=41.54 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=18.0
Q ss_pred CCCccEeeeccCCCCccccc
Q 001657 79 GYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 79 G~N~ti~aYGqTgSGKTyTm 98 (1036)
.-+.||.-||+=|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56788999999999999988
No 471
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=46.97 E-value=10 Score=47.90 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=20.1
Q ss_pred chhhHHHhhc-----CCCccEeeeccCCCCcccccc
Q 001657 69 VAPLVDGLFQ-----GYNATVLAYGQTGSGKTYTMG 99 (1036)
Q Consensus 69 v~plV~~~l~-----G~N~ti~aYGqTgSGKTyTm~ 99 (1036)
|..+++.+.. |.+..|+. -+||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 4456666665 34455544 489999999993
No 472
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=46.77 E-value=4.3e+02 Score=31.09 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=12.3
Q ss_pred chhhccC-CCCcceeeecccc
Q 001657 976 KKLATVG-QPGKLWRWKRSHH 995 (1036)
Q Consensus 976 ~~~~~~~-~~~~~~~~~~~~~ 995 (1036)
..+++.| ..|.+.-|-...-
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CceeeeccCCCcEEEEEccCc
Confidence 3444455 7788888865543
No 473
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.62 E-value=8.2e+02 Score=32.21 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.5
Q ss_pred eeeccCCCCccccc
Q 001657 85 LAYGQTGSGKTYTM 98 (1036)
Q Consensus 85 ~aYGqTgSGKTyTm 98 (1036)
|-.||.||||+...
T Consensus 46 mIiGpNGSGKSSiV 59 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIV 59 (1072)
T ss_pred eEECCCCCCchHHH
Confidence 34699999999875
No 474
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=46.35 E-value=2.7e+02 Score=30.77 Aligned_cols=46 Identities=26% Similarity=0.459 Sum_probs=28.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (1036)
Q Consensus 571 Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L~rkmk 633 (1036)
+-++..+++..+||.++ ++..+++..|+.||..+++-=++|-.|+|
T Consensus 86 sQRDRFR~Rn~ELE~el-----------------r~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEEL-----------------RKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666333 34445667777777777777777655444
No 475
>PRK11519 tyrosine kinase; Provisional
Probab=46.20 E-value=3e+02 Score=35.33 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001657 809 SKALVEMASQLSEAEERERALV 830 (1036)
Q Consensus 809 ~~~~~~l~~ql~~~e~r~~~~~ 830 (1036)
++++.++..+++.+|.+...+.
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445544443333
No 476
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=46.13 E-value=10 Score=40.76 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred hhhHHHhhcC---CCccEeeeccCCCCccccc
Q 001657 70 APLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 70 ~plV~~~l~G---~N~ti~aYGqTgSGKTyTm 98 (1036)
-+-+|.++.| ...++.-||++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 4567777775 4667889999999999876
No 477
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=45.99 E-value=8.4 Score=38.36 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=13.0
Q ss_pred EeeeccCCCCccccc
Q 001657 84 VLAYGQTGSGKTYTM 98 (1036)
Q Consensus 84 i~aYGqTgSGKTyTm 98 (1036)
|+.+|++|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998875
No 478
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=45.90 E-value=9 Score=41.01 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.2
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3446699999999998
No 479
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=45.83 E-value=1.2e+02 Score=29.46 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001657 795 MERIASLENMLNMSSKALVEMASQLSEA 822 (1036)
Q Consensus 795 ~~qi~~Lq~~~~~~~~~~~~l~~ql~~~ 822 (1036)
..++..|++.+...+.++.++...+.++
T Consensus 5 ~~q~~ql~~~i~~l~~~i~~l~~~i~e~ 32 (126)
T TIGR00293 5 AAELQILQQQVESLQAQIAALRALIAEL 32 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 480
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.71 E-value=11 Score=42.12 Aligned_cols=80 Identities=24% Similarity=0.417 Sum_probs=50.4
Q ss_pred EEcceeeCCCCCCccccccccchhh-HHHhhcCCC---ccEeeeccCCCCcccccc---cC-------CCCC----Cccc
Q 001657 48 FTFDHVYGNGGSPSSAMFGECVAPL-VDGLFQGYN---ATVLAYGQTGSGKTYTMG---TG-------LREG----FQTG 109 (1036)
Q Consensus 48 F~FD~Vf~~~~t~q~~vy~~~v~pl-V~~~l~G~N---~ti~aYGqTgSGKTyTm~---G~-------~~~~----~~~G 109 (1036)
-.++.|-+-++. -+.+-+.++-|+ .-++|.|.- ..|+.||+.|+||+|.-- +. .++. .=.|
T Consensus 130 VkWsDVAGLE~A-KeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 130 VKWSDVAGLEGA-KEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred CchhhhccchhH-HHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 345566655443 345555555555 357777765 679999999999999741 10 0010 1136
Q ss_pred cHHHHHHHHHHHHHhhccc
Q 001657 110 LIPQVMNALFNKIETLRHQ 128 (1036)
Q Consensus 110 iipr~~~~LF~~i~~~~~~ 128 (1036)
=-.+.+..||.......+.
T Consensus 209 ESEkLVknLFemARe~kPS 227 (439)
T KOG0739|consen 209 ESEKLVKNLFEMARENKPS 227 (439)
T ss_pred cHHHHHHHHHHHHHhcCCc
Confidence 6778999999988775554
No 481
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=45.63 E-value=10 Score=43.73 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=22.5
Q ss_pred chhhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 69 v~plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
+..++..++.+ .+.|+..|+||||||.+|
T Consensus 167 ~~~~L~~~v~~-~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAA-RLAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhC-CCeEEEECCCCCCHHHHH
Confidence 34566666665 478888999999999987
No 482
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.27 E-value=8.4 Score=45.83 Aligned_cols=17 Identities=47% Similarity=0.601 Sum_probs=14.6
Q ss_pred ccEeeeccCCCCccccc
Q 001657 82 ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm 98 (1036)
.+|+-.|+||+|||+|+
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36677799999999998
No 483
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.15 E-value=12 Score=45.02 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=20.3
Q ss_pred hhHHHhhcCCCccEeeeccCCCCccccc
Q 001657 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 71 plV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
..|..++.|.| +++..+||||||.+.
T Consensus 18 ~ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 45667788986 566689999999764
No 484
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.97 E-value=8.6 Score=46.34 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.8
Q ss_pred ccEeeeccCCCCccccc
Q 001657 82 ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm 98 (1036)
..|.-.|+||+|||+|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 45677799999999998
No 485
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=44.94 E-value=10 Score=43.50 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=0.0
Q ss_pred cCCCccEeeeccCCCCccccc
Q 001657 78 QGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 78 ~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.|+.-+|++.|+.|+|||..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
No 486
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=44.82 E-value=17 Score=45.51 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.9
Q ss_pred CccEeeeccCCCCccccc
Q 001657 81 NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 81 N~ti~aYGqTgSGKTyTm 98 (1036)
+.-++++|+||||||..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSV 241 (641)
T ss_pred CceEEEEeCCCCCccceE
Confidence 467899999999999987
No 487
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=44.69 E-value=2.8e+02 Score=27.38 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 840 FMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEA 888 (1036)
Q Consensus 840 s~~eak~~l~~l~~~~~~~~~ql~E~~~k~~E~~~~~~el~~~~~~~~~ 888 (1036)
++.+|...|+.-.+.+.. ++..++..+.+...+++.+...+.++..
T Consensus 91 ~~~eA~~~l~~~~~~l~~---~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEK---ALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555555 5555555555555555555544444443
No 488
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.47 E-value=12 Score=44.29 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=20.1
Q ss_pred hHHHhhcCCCccEeeeccCCCCccccc
Q 001657 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 72 lV~~~l~G~N~ti~aYGqTgSGKTyTm 98 (1036)
+...+-.+.-..++-||++|+|||++.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 444444566667888999999999887
No 489
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=44.39 E-value=22 Score=43.73 Aligned_cols=42 Identities=19% Similarity=0.382 Sum_probs=25.3
Q ss_pred cceeeCCCCCCccccccccchhhHHHh--hcCCCccEeeeccCCCCccc
Q 001657 50 FDHVYGNGGSPSSAMFGECVAPLVDGL--FQGYNATVLAYGQTGSGKTY 96 (1036)
Q Consensus 50 FD~Vf~~~~t~q~~vy~~~v~plV~~~--l~G~N~ti~aYGqTgSGKTy 96 (1036)
|+.+||- +++-+.+|..+...+ +..-...++-.||+|+|||.
T Consensus 75 F~d~yGl-----ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSs 118 (644)
T PRK15455 75 FEEFYGM-----EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSS 118 (644)
T ss_pred hhcccCc-----HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchH
Confidence 5566653 344444454443333 24445567777999999994
No 490
>PLN03188 kinesin-12 family protein; Provisional
Probab=44.36 E-value=9.8e+02 Score=32.47 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001657 577 TLKLKALEAQILELKKK-QESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (1036)
Q Consensus 577 ~~~l~~LE~el~~L~~e-~~~~~~L~K~K~K~E~~~~~L~~ei~~lk~~kv~L 628 (1036)
-+-+..|-.+|..|+.+ ++++.-|-+....+..|+.+.=+.++.--...|.|
T Consensus 1154 ~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl 1206 (1320)
T PLN03188 1154 SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRL 1206 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35678889999999955 44555666677788888888877777766666664
No 491
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.28 E-value=3.6e+02 Score=27.61 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001657 538 MELEEEKRIVQQERDRLLAEIENL 561 (1036)
Q Consensus 538 ~~Le~ei~~lqkErd~Ll~~l~~~ 561 (1036)
.+|++++..+..+.+.|..++.++
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444
No 492
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=44.16 E-value=1.1e+03 Score=32.86 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.0
Q ss_pred cEeeeccCCCCccccc
Q 001657 83 TVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 83 ti~aYGqTgSGKTyTm 98 (1036)
.++-.|++|||||.+|
T Consensus 26 ~~~~~G~NGsGKS~~l 41 (1353)
T TIGR02680 26 RLLLRGNNGAGKSKVL 41 (1353)
T ss_pred eEEEECCCCCcHHHHH
Confidence 3445599999999998
No 493
>PRK00131 aroK shikimate kinase; Reviewed
Probab=44.09 E-value=10 Score=38.46 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.9
Q ss_pred ccEeeeccCCCCccccc
Q 001657 82 ATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 82 ~ti~aYGqTgSGKTyTm 98 (1036)
.+|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999884
No 494
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=44.08 E-value=14 Score=40.01 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=22.9
Q ss_pred chhhHHHhhcCC---CccEeeeccCCCCccccc
Q 001657 69 VAPLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 69 v~plV~~~l~G~---N~ti~aYGqTgSGKTyTm 98 (1036)
.-|-+|.++.|- .++++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 345667777643 778888999999998765
No 495
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=43.77 E-value=4.2e+02 Score=28.08 Aligned_cols=48 Identities=23% Similarity=0.151 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001657 649 ELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELL 696 (1036)
Q Consensus 649 ei~qLk~~~rK~e~Ei~~L~~~~~~q~~vLqRK~eE~~a~~krLke~L 696 (1036)
.+..-...+.+++.++.........+...|..+-.++...+......|
T Consensus 93 ~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~L 140 (201)
T PF12072_consen 93 QLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQEL 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444333333333
No 496
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.70 E-value=4.4e+02 Score=33.83 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=16.5
Q ss_pred HHHHHHHHHHH-HhHHHHHHHHHH
Q 001657 726 QKWLEHELEVS-ANVHEVRFKYEK 748 (1036)
Q Consensus 726 ~~Wl~~ELE~l-~~l~E~~~~~~~ 748 (1036)
..||.++|..+ .+|.+++.+++.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~ 292 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNV 292 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999888 677777555543
No 497
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=43.62 E-value=9.9 Score=39.19 Aligned_cols=13 Identities=46% Similarity=0.687 Sum_probs=0.0
Q ss_pred EeeeccCCCCccc
Q 001657 84 VLAYGQTGSGKTY 96 (1036)
Q Consensus 84 i~aYGqTgSGKTy 96 (1036)
|+.+|+.|||||+
T Consensus 2 i~i~G~pGsGKst 14 (183)
T TIGR01359 2 VFVLGGPGSGKGT 14 (183)
T ss_pred EEEECCCCCCHHH
No 498
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=43.60 E-value=1.6e+02 Score=31.16 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001657 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQ 615 (1036)
Q Consensus 536 ki~~Le~ei~~lqkErd~Ll~~l~~~~~~~~~~~~Kl~~~~~~~l~~LE~el~~L~~e~~~~~~L~K~K~K~E~~~~~L~ 615 (1036)
....|+.|+..|+.+...+...........+....=++.++++.|+=.+.++.+|.. -+.+....++.+.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~----------~~~~~~~~l~~v~ 166 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE----------GRSKSGKNLKSVR 166 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc----------cCCCCCCCHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001657 616 AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1036)
Q Consensus 616 ~ei~~lk~~kv~L~rkmk~e~~~~~~~~~~~ekei~qLk~~~rK~e~Ei~~L~ 668 (1036)
++|..++.|-.- |+..++.++.|+..|+
T Consensus 167 ~Dl~~ie~QV~~-------------------------Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 167 EDLDTIEEQVDG-------------------------LESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHhc
No 499
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=43.59 E-value=9.4 Score=42.70 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=0.0
Q ss_pred cCCCccEeeeccCCCCccccc
Q 001657 78 QGYNATVLAYGQTGSGKTYTM 98 (1036)
Q Consensus 78 ~G~N~ti~aYGqTgSGKTyTm 98 (1036)
.|++.+|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
No 500
>PHA02244 ATPase-like protein
Probab=43.57 E-value=12 Score=43.42 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=0.0
Q ss_pred eCCCCCCccccccccchhhHHHhhcCCCccEeeeccCCCCccc
Q 001657 54 YGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTY 96 (1036)
Q Consensus 54 f~~~~t~q~~vy~~~v~plV~~~l~G~N~ti~aYGqTgSGKTy 96 (1036)
|+.........+......+...+-.|.+..| +|+||+|||+
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL--~GppGtGKTt 134 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNANIPVFL--KGGAGSGKNH 134 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcCCCEEE--ECCCCCCHHH
Done!