Query 001658
Match_columns 1036
No_of_seqs 838 out of 6085
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 15:52:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001658.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_957-961//hhsearch_pdb/001658hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 414.2 20.3 259 693-969 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 412.8 15.9 258 693-968 13-289 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 410.4 19.5 257 694-968 27-306 (308)
4 4b9d_A Serine/threonine-protei 1.0 1 1 404.9 13.9 252 692-962 23-277 (350)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 402.2 21.8 259 692-967 35-299 (307)
6 4ase_A Vascular endothelial gr 1.0 1 1 394.7 16.4 269 684-969 55-348 (353)
7 4fie_A Serine/threonine-protei 1.0 1 1 394.6 18.2 250 692-961 150-400 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 393.7 17.3 249 693-961 74-323 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 391.1 15.4 262 693-977 58-325 (336)
10 3hmm_A TGF-beta receptor type- 1.0 1 1 386.9 16.9 267 693-968 3-297 (303)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=414.19 Aligned_cols=259 Identities=27% Similarity=0.420 Sum_probs=216.4
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEE
Q ss_conf 39999893035897889996828------993899999241033209999999999874015884316858870832289
Q 001658 693 ENFSPSNKLGEGGFGPVYKGKLG------DGRAIAVKQLSVASRQGKSQFVAEIATISAVQHRNLVKLHGCCIEGAERLL 766 (1036)
Q Consensus 693 ~~~~~~~~iG~G~fG~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~f~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~l 766 (1036)
++|.+.++||+|+||.||+|++. +++.||||+++..+....++|.+|+++|++++|||||+++|+|.+.+..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCE
Q ss_conf 998347999445632188-------------7775767799999999999999876189650113457885884699844
Q 001658 767 VYEYLENKSLDQALFGQR-------------SLTLDWATRYEICSGVARGLAYLHEESRVRIIHRDVKASNVLLDADLVP 833 (1036)
Q Consensus 767 V~E~~~~gsL~~~l~~~~-------------~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NILl~~~~~~ 833 (1036)
|||||++|+|.++++... ...++|..++.|+.|+|+||+|||+.+ |+||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEECCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9997474114158987-42235433567457100023878942467868999999982-999999998156778999999
Q 001658 834 KISDFGLAKLYDDKKT-HISTRVAGTIGYLAPEYAMRGHLTEKTDVFAFGVLALETVS-GRPNSDPSLDEEKLYLLEWAW 911 (1036)
Q Consensus 834 kl~DFGla~~~~~~~~-~~~~~~~gt~~y~APE~~~~~~~~~ksDVwSlGvil~ellt-G~~p~~~~~~~~~~~l~~~~~ 911 (1036)
||+|||+|+....... .......||+.|||||++.+..++.++|||||||++|||+| |+.||......+....+.
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~--- 274 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCIT--- 274 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHH---
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH---
T ss_conf 97666033365678753004764556566582654479999663001057899999828999999989999999998---
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 8740495311258524367999999999999981044999999989999996405588
Q 001658 912 HLHENNQEIELADPKLIEFNEEEVKRLIGVALLCTQTLPSLRPSMSRVVAMLCGDMEV 969 (1036)
Q Consensus 912 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~~ 969 (1036)
.+. .+... ......+.+++.+||+.||++||||.||+++|+...+.
T Consensus 275 ----~g~-----~~~~p---~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 275 ----QGR-----ELERP---RACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp ----HTC-----CCCCC---TTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred ----CCC-----CCCCC---CCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf ----089-----89986---44639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=412.79 Aligned_cols=258 Identities=25% Similarity=0.428 Sum_probs=215.7
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEE
Q ss_conf 39999893035897889996828------993899999241033209999999999874015884316858870832289
Q 001658 693 ENFSPSNKLGEGGFGPVYKGKLG------DGRAIAVKQLSVASRQGKSQFVAEIATISAVQHRNLVKLHGCCIEGAERLL 766 (1036)
Q Consensus 693 ~~~~~~~~iG~G~fG~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~f~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~l 766 (1036)
++|.+.+.||+|+||.||+|++. +++.||||+++..+....++|.+|++++++++|||||+++|+|.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEE
Q ss_conf 998347999445632188-----------777576779999999999999987618965011345788588469984499
Q 001658 767 VYEYLENKSLDQALFGQR-----------SLTLDWATRYEICSGVARGLAYLHEESRVRIIHRDVKASNVLLDADLVPKI 835 (1036)
Q Consensus 767 V~E~~~~gsL~~~l~~~~-----------~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NILl~~~~~~kl 835 (1036)
|||||++|+|.++++..+ ...++|..++.|+.|||+||+|||+++ |+||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EECCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 974741141589874-2235433567457100023878942467868999999982-99999999815677899999987
Q 001658 836 SDFGLAKLYDDKKTH-ISTRVAGTIGYLAPEYAMRGHLTEKTDVFAFGVLALETVS-GRPNSDPSLDEEKLYLLEWAWHL 913 (1036)
Q Consensus 836 ~DFGla~~~~~~~~~-~~~~~~gt~~y~APE~~~~~~~~~ksDVwSlGvil~ellt-G~~p~~~~~~~~~~~l~~~~~~~ 913 (1036)
+|||+|+........ ......||+.|||||++.+..++.++|||||||++|||+| |+.||......+....+.
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~----- 244 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECIT----- 244 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHH-----
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH-----
T ss_conf 873001006788741664751347010388987079997036677889999999808999999989999999998-----
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 4049531125852436799999999999998104499999998999999640558
Q 001658 914 HENNQEIELADPKLIEFNEEEVKRLIGVALLCTQTLPSLRPSMSRVVAMLCGDME 968 (1036)
Q Consensus 914 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~ 968 (1036)
.+.. +. .+...+..+.+++.+||+.+|++||||.||++.|+....
T Consensus 245 --~~~~-----~~---~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 245 --QGRV-----LQ---RPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp --HTCC-----CC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --CCCC-----CC---CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf --0898-----89---974143999999999768796689299999999987776
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=410.40 Aligned_cols=257 Identities=24% Similarity=0.356 Sum_probs=211.7
Q ss_pred CCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEECCCC-CHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEE
Q ss_conf 9999893035897889996828------9938999992410-33209999999999874015884316858870832289
Q 001658 694 NFSPSNKLGEGGFGPVYKGKLG------DGRAIAVKQLSVA-SRQGKSQFVAEIATISAVQHRNLVKLHGCCIEGAERLL 766 (1036)
Q Consensus 694 ~~~~~~~iG~G~fG~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~l 766 (1036)
++++.++||+|+||.||+|++. +++.||||+++.. .....+.|.+|+.++++++|||||+++|+|.+.+..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHHCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 998347999445632188--------------777576779999999999999987618965011345788588469984
Q 001658 767 VYEYLENKSLDQALFGQR--------------SLTLDWATRYEICSGVARGLAYLHEESRVRIIHRDVKASNVLLDADLV 832 (1036)
Q Consensus 767 V~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NILl~~~~~ 832 (1036)
|||||++|+|.++|+... ...++|..++.|+.|||+||+|||+.+ ||||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred EEEEECCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 49997474114158987-42235433567457100023878942467868999999982-99999999815677899999
Q 001658 833 PKISDFGLAKLYDDKKT-HISTRVAGTIGYLAPEYAMRGHLTEKTDVFAFGVLALETVS-GRPNSDPSLDEEKLYLLEWA 910 (1036)
Q Consensus 833 ~kl~DFGla~~~~~~~~-~~~~~~~gt~~y~APE~~~~~~~~~ksDVwSlGvil~ellt-G~~p~~~~~~~~~~~l~~~~ 910 (1036)
+||+|||+++....... .......||+.|||||++.++.++.++|||||||++|||+| |+.||......+....+.
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~-- 261 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIR-- 261 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHH--
T ss_pred EEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH--
T ss_conf 898876020233677740473451257765698998279999630001579999999968999999989999999998--
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 9874049531125852436799999999999998104499999998999999640558
Q 001658 911 WHLHENNQEIELADPKLIEFNEEEVKRLIGVALLCTQTLPSLRPSMSRVVAMLCGDME 968 (1036)
Q Consensus 911 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~ 968 (1036)
.+.. + ..+.+.+..+.+++..||+.+|.+||||.||++.|+....
T Consensus 262 -----~~~~-----~---~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n 306 (308)
T 4gt4_A 262 -----NRQV-----L---PCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN 306 (308)
T ss_dssp -----TTCC-----C---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred -----CCCC-----C---CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCC
T ss_conf -----1998-----9---9962036999999999758796579299999999985318
No 4
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=404.87 Aligned_cols=252 Identities=22% Similarity=0.366 Sum_probs=210.8
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEE-CCCCEEEEEECCCC--CHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEE
Q ss_conf 23999989303589788999682-89938999992410--3320999999999987401588431685887083228999
Q 001658 692 TENFSPSNKLGEGGFGPVYKGKL-GDGRAIAVKQLSVA--SRQGKSQFVAEIATISAVQHRNLVKLHGCCIEGAERLLVY 768 (1036)
Q Consensus 692 ~~~~~~~~~iG~G~fG~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV~ 768 (1036)
-++|++.+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+.++++++|||||++++++.+.+..++||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEECCCC
Q ss_conf 83479994456321887775767799999999999999876189650113457885884699844999747411415898
Q 001658 769 EYLENKSLDQALFGQRSLTLDWATRYEICSGVARGLAYLHEESRVRIIHRDVKASNVLLDADLVPKISDFGLAKLYDDKK 848 (1036)
Q Consensus 769 E~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NILl~~~~~~kl~DFGla~~~~~~~ 848 (1036)
||+++|+|.+++...+...+++.....|+.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+.+....
T Consensus 103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred ECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 4889983999999738999978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 74223543356745710002387894246786899999998299999999815677899999987404953112585243
Q 001658 849 THISTRVAGTIGYLAPEYAMRGHLTEKTDVFAFGVLALETVSGRPNSDPSLDEEKLYLLEWAWHLHENNQEIELADPKLI 928 (1036)
Q Consensus 849 ~~~~~~~~gt~~y~APE~~~~~~~~~ksDVwSlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~ 928 (1036)
......+||+.|||||++.+..|+.++||||+||++|||+||++||......+....+ .... .+..
T Consensus 180 -~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i------~~~~------~~~~- 245 (350)
T 4b9d_A 180 -ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKI------ISGS------FPPV- 245 (350)
T ss_dssp -HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH------HHTC------CCCC-
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH------HCCC------CCCC-
T ss_conf -4101457883603999987999895999999999999999787998996999999999------8089------9999-
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 6799999999999998104499999998999999
Q 001658 929 EFNEEEVKRLIGVALLCTQTLPSLRPSMSRVVAM 962 (1036)
Q Consensus 929 ~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~ 962 (1036)
.......+.+++.+||+.||.+|||+.|+++.
T Consensus 246 --~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 246 --SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp --CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred --CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf --75579999999999855896679089999639
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=402.20 Aligned_cols=259 Identities=25% Similarity=0.426 Sum_probs=208.7
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCC--CHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf 2399998930358978899968289938999992410--33209999999999874015884316858870832289998
Q 001658 692 TENFSPSNKLGEGGFGPVYKGKLGDGRAIAVKQLSVA--SRQGKSQFVAEIATISAVQHRNLVKLHGCCIEGAERLLVYE 769 (1036)
Q Consensus 692 ~~~~~~~~~iG~G~fG~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV~E 769 (1036)
.+++.+.++||+|+||+||+|++.+ .||||+++.. +....+.|.+|+.++++++|||||+++|+|.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf 7994984498208886899999899--68999997268999999999999999985899887469999978-95899997
Q ss_pred ECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEECCCC-
Q ss_conf 3479994456321887775767799999999999999876189650113457885884699844999747411415898-
Q 001658 770 YLENKSLDQALFGQRSLTLDWATRYEICSGVARGLAYLHEESRVRIIHRDVKASNVLLDADLVPKISDFGLAKLYDDKK- 848 (1036)
Q Consensus 770 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NILl~~~~~~kl~DFGla~~~~~~~- 848 (1036)
||++|+|.++++.. ...++|..++.|+.|||+||+|||+.+ ||||||||+|||+++++.+||+|||+|+......
T Consensus 112 y~~gGsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~ 187 (307)
T 3omv_A 112 WCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred CCCCCCHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCC
T ss_conf 48998788987524-899999999999999999999997799---52785578997888999089944157542466776
Q ss_pred CCCCCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 742235433567457100023---87894246786899999998299999999815677899999987404953112585
Q 001658 849 THISTRVAGTIGYLAPEYAMR---GHLTEKTDVFAFGVLALETVSGRPNSDPSLDEEKLYLLEWAWHLHENNQEIELADP 925 (1036)
Q Consensus 849 ~~~~~~~~gt~~y~APE~~~~---~~~~~ksDVwSlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~ 925 (1036)
........||+.|||||++.+ +.++.++|||||||++|||+||+.||............ ... ....|
T Consensus 188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~------~~~----~~~~p 257 (307)
T 3omv_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFM------VGR----GYASP 257 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHH------HHT----TCCCC
T ss_pred CEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH------HHC----CCCCC
T ss_conf 40315644687724987861468998786877572899999999788998999969999999------965----88888
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 243679999999999999810449999999899999964055
Q 001658 926 KLIEFNEEEVKRLIGVALLCTQTLPSLRPSMSRVVAMLCGDM 967 (1036)
Q Consensus 926 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~ 967 (1036)
.+.......+..+.+++.+||+.+|++||||.||++.|+...
T Consensus 258 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 258 DLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp CSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 720035445699999999975779768909899999999974
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=394.69 Aligned_cols=269 Identities=25% Similarity=0.355 Sum_probs=214.5
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC------CCEEEEEECCCCC-HHCHHHHHHHHHHHHHHCC-CCCCEEE
Q ss_conf 989999872399998930358978899968289------9389999924103-3209999999999874015-8843168
Q 001658 684 SYAELKTATENFSPSNKLGEGGFGPVYKGKLGD------GRAIAVKQLSVAS-RQGKSQFVAEIATISAVQH-RNLVKLH 755 (1036)
Q Consensus 684 ~~~~l~~~~~~~~~~~~iG~G~fG~Vy~~~~~~------g~~vAvK~l~~~~-~~~~~~f~~Ei~~l~~l~H-~nIv~l~ 755 (1036)
...+.+...++|++.+.||+|+||.||+|.+.. ++.||||++.... ....+.|.+|+.+|.+++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 88551705799598209821789599999986888544775999999762358689999999999999757998487788
Q ss_pred EEEECC-CEEEEEEEECCCCCHHHHHHCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 588708-32289998347999445632188--------------777576779999999999999987618965011345
Q 001658 756 GCCIEG-AERLLVYEYLENKSLDQALFGQR--------------SLTLDWATRYEICSGVARGLAYLHEESRVRIIHRDV 820 (1036)
Q Consensus 756 g~~~~~-~~~~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Di 820 (1036)
|+|.+. +..++|||||++|+|.++|+... ...++|..++.|+.|||+||+|||+++ ||||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCC
T ss_pred EEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCC
T ss_conf 99994697799999838989799999743566654333410110356899999999999999987676278---435746
Q ss_pred CCCCEEECCCCCEEEEECCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCC
Q ss_conf 788588469984499974741141589874-2235433567457100023878942467868999999982-99999999
Q 001658 821 KASNVLLDADLVPKISDFGLAKLYDDKKTH-ISTRVAGTIGYLAPEYAMRGHLTEKTDVFAFGVLALETVS-GRPNSDPS 898 (1036)
Q Consensus 821 kp~NILl~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~APE~~~~~~~~~ksDVwSlGvil~ellt-G~~p~~~~ 898 (1036)
||+|||+++++.+||+|||+|+.+...... ......||+.|||||++.+..++.++|||||||++|||+| |+.||...
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~ 291 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 291 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCC
T ss_conf 72113057999789796543222456887203254014666569899946999975537406899999981899999998
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 81567789999998740495311258524367999999999999981044999999989999996405588
Q 001658 899 LDEEKLYLLEWAWHLHENNQEIELADPKLIEFNEEEVKRLIGVALLCTQTLPSLRPSMSRVVAMLCGDMEV 969 (1036)
Q Consensus 899 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~~ 969 (1036)
...+... . ....+. .+..... ....+.+++..||+.||.+|||+.||++.|+..++.
T Consensus 292 ~~~~~~~--~----~i~~g~-----~~~~p~~---~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 292 KIDEEFC--R----RLKEGT-----RMRAPDY---TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp CCSHHHH--H----HHHHTC-----CCCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHH--H----HHHCCC-----CCCCCCC---CCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 9899999--9----997389-----8888865---789999999997686966793999999999999987
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=394.61 Aligned_cols=250 Identities=24% Similarity=0.388 Sum_probs=208.8
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEE
Q ss_conf 239999893035897889996828-9938999992410332099999999998740158843168588708322899983
Q 001658 692 TENFSPSNKLGEGGFGPVYKGKLG-DGRAIAVKQLSVASRQGKSQFVAEIATISAVQHRNLVKLHGCCIEGAERLLVYEY 770 (1036)
Q Consensus 692 ~~~~~~~~~iG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV~E~ 770 (1036)
.+.|+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.+|++++|||||++++++.+.+..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEECCCCCC
Q ss_conf 47999445632188777576779999999999999987618965011345788588469984499974741141589874
Q 001658 771 LENKSLDQALFGQRSLTLDWATRYEICSGVARGLAYLHEESRVRIIHRDVKASNVLLDADLVPKISDFGLAKLYDDKKTH 850 (1036)
Q Consensus 771 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NILl~~~~~~kl~DFGla~~~~~~~~~ 850 (1036)
|++|+|.+++.. ..+++..+..|+.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+.+.....
T Consensus 230 ~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~- 302 (423)
T 4fie_A 230 LEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 302 (423)
T ss_dssp CTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-
T ss_pred CCCCCHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 899828988761---69899999999999999999999889---04465787778985899989803726547778876-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 22354335674571000238789424678689999999829999999981567789999998740495311258524367
Q 001658 851 ISTRVAGTIGYLAPEYAMRGHLTEKTDVFAFGVLALETVSGRPNSDPSLDEEKLYLLEWAWHLHENNQEIELADPKLIEF 930 (1036)
Q Consensus 851 ~~~~~~gt~~y~APE~~~~~~~~~ksDVwSlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~ 930 (1036)
.....+||+.|||||++.+..|+.++||||+||++|||++|++||......+....+. . . ..+.+ ..
T Consensus 303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~---~----~-----~~~~~-~~ 369 (423)
T 4fie_A 303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR---D----N-----LPPRL-KN 369 (423)
T ss_dssp CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHH---H----S-----CCCCC-SC
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH---C----C-----CCCCC-CC
T ss_conf 4346664747279999779999968999999999999997879989869999999997---2----7-----99887-65
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 9999999999999810449999999899999
Q 001658 931 NEEEVKRLIGVALLCTQTLPSLRPSMSRVVA 961 (1036)
Q Consensus 931 ~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~ 961 (1036)
.......+.+++.+||+.||.+|||+.|+++
T Consensus 370 ~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 370 LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 0129999999999986789568909999960
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=393.74 Aligned_cols=249 Identities=24% Similarity=0.390 Sum_probs=208.1
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEEC
Q ss_conf 39999893035897889996828-99389999924103320999999999987401588431685887083228999834
Q 001658 693 ENFSPSNKLGEGGFGPVYKGKLG-DGRAIAVKQLSVASRQGKSQFVAEIATISAVQHRNLVKLHGCCIEGAERLLVYEYL 771 (1036)
Q Consensus 693 ~~~~~~~~iG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV~E~~ 771 (1036)
+.|+..++||+|+||.||+|+.. +|+.||||++........+.+.+|+.+|++++|||||++++++.+.+..|+||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEECCCCCCC
Q ss_conf 79994456321887775767799999999999999876189650113457885884699844999747411415898742
Q 001658 772 ENKSLDQALFGQRSLTLDWATRYEICSGVARGLAYLHEESRVRIIHRDVKASNVLLDADLVPKISDFGLAKLYDDKKTHI 851 (1036)
Q Consensus 772 ~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NILl~~~~~~kl~DFGla~~~~~~~~~~ 851 (1036)
++|+|.+++.. ..+++.....++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+.+..... .
T Consensus 154 ~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~-~ 226 (346)
T 4fih_A 154 EGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-R 226 (346)
T ss_dssp TTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-C
T ss_pred CCCCHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-C
T ss_conf 99808999871---89899999999999999999999888---35562788997887999889902757536678877-5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 23543356745710002387894246786899999998299999999815677899999987404953112585243679
Q 001658 852 STRVAGTIGYLAPEYAMRGHLTEKTDVFAFGVLALETVSGRPNSDPSLDEEKLYLLEWAWHLHENNQEIELADPKLIEFN 931 (1036)
Q Consensus 852 ~~~~~gt~~y~APE~~~~~~~~~ksDVwSlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~ 931 (1036)
....+||+.|||||++.+..|+.++||||+||++|||++|++||......+....+. . . ..+.+ ...
T Consensus 227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~---~----~-----~~~~~-~~~ 293 (346)
T 4fih_A 227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR---D----N-----LPPRL-KNL 293 (346)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHH---H----S-----SCCCC-SCG
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH---C----C-----CCCCC-CCC
T ss_conf 346562758279999779999968999999999999997879989859999999997---1----7-----99988-750
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 999999999999810449999999899999
Q 001658 932 EEEVKRLIGVALLCTQTLPSLRPSMSRVVA 961 (1036)
Q Consensus 932 ~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~ 961 (1036)
......+.+++.+||+.||.+|||+.|+++
T Consensus 294 ~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 294 HKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 229999999999986799568909999960
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=391.07 Aligned_cols=262 Identities=23% Similarity=0.236 Sum_probs=210.8
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEEC
Q ss_conf 39999893035897889996828-99389999924103320999999999987401588431685887083228999834
Q 001658 693 ENFSPSNKLGEGGFGPVYKGKLG-DGRAIAVKQLSVASRQGKSQFVAEIATISAVQHRNLVKLHGCCIEGAERLLVYEYL 771 (1036)
Q Consensus 693 ~~~~~~~~iG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV~E~~ 771 (1036)
+.|...++||+|+||.||+|+.. +|+.||||+++.... +.+|+.++++++|||||++++++.+.+..++||||+
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 351768685138780999999889998999999788886-----999999998579989993999999899999999665
Q ss_pred CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC-CEEEEECCCCEEECCCCCC
Q ss_conf 799944563218877757677999999999999998761896501134578858846998-4499974741141589874
Q 001658 772 ENKSLDQALFGQRSLTLDWATRYEICSGVARGLAYLHEESRVRIIHRDVKASNVLLDADL-VPKISDFGLAKLYDDKKTH 850 (1036)
Q Consensus 772 ~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NILl~~~~-~~kl~DFGla~~~~~~~~~ 850 (1036)
++|+|.+++... ..+++.....++.|++.||+|||+++ |+||||||+|||++.++ .+||+|||+|+.+......
T Consensus 133 ~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~ 207 (336)
T 4g3f_A 133 EGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG 207 (336)
T ss_dssp TTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC------
T ss_pred CCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCC
T ss_conf 998699999876--99999999999999999999999889---0426167788799589997999627877685678765
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ----2235433567457100023878942467868999999982999999998156778999999874049531125852
Q 001658 851 ----ISTRVAGTIGYLAPEYAMRGHLTEKTDVFAFGVLALETVSGRPNSDPSLDEEKLYLLEWAWHLHENNQEIELADPK 926 (1036)
Q Consensus 851 ----~~~~~~gt~~y~APE~~~~~~~~~ksDVwSlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~ 926 (1036)
....++||+.|||||++.+..|+.++||||+||++|||+||++||...........+. .. .+.
T Consensus 208 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~------~~-------~~~ 274 (336)
T 4g3f_A 208 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIA------SE-------PPP 274 (336)
T ss_dssp ------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHH------HS-------CCG
T ss_pred CCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH------CC-------CCC
T ss_conf 40221785455802008999889998908999999999999997869989989999999998------08-------998
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 436799999999999998104499999998999999640558876778999
Q 001658 927 LIEFNEEEVKRLIGVALLCTQTLPSLRPSMSRVVAMLCGDMEVSTVTAKPG 977 (1036)
Q Consensus 927 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~~~~~~~~p~ 977 (1036)
....+......+.+++.+||+.||.+|||+.|+++.|............|+
T Consensus 275 ~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw 325 (336)
T 4g3f_A 275 IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPW 325 (336)
T ss_dssp GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCS
T ss_pred CHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 002586679999999999762897689599999999999975443216987
No 10
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=386.91 Aligned_cols=267 Identities=24% Similarity=0.276 Sum_probs=204.2
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----EEEEEE
Q ss_conf 3999989303589788999682899389999924103320999999999987401588431685887083----228999
Q 001658 693 ENFSPSNKLGEGGFGPVYKGKLGDGRAIAVKQLSVASRQGKSQFVAEIATISAVQHRNLVKLHGCCIEGA----ERLLVY 768 (1036)
Q Consensus 693 ~~~~~~~~iG~G~fG~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~Ei~~l~~l~H~nIv~l~g~~~~~~----~~~lV~ 768 (1036)
++|.+.++||+|+||+||+|++ +|+.||||+++..... ...++.|+..+.+++|||||+++|+|.+.+ ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 5899978984089939999999-9989999998831336-6999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCEEECCCCCEEEEECCCCEE
Q ss_conf 8347999445632188777576779999999999999987618-----96501134578858846998449997474114
Q 001658 769 EYLENKSLDQALFGQRSLTLDWATRYEICSGVARGLAYLHEES-----RVRIIHRDVKASNVLLDADLVPKISDFGLAKL 843 (1036)
Q Consensus 769 E~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~-----~~~ivH~Dikp~NILl~~~~~~kl~DFGla~~ 843 (1036)
|||++|+|.++++. ..++|..+.+|+.|+++||+|||+++ .++|+||||||+|||++.++.+||+|||+|+.
T Consensus 81 Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp ECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred CCCCCCCHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCC
T ss_conf 17899968999975---799989999999999999999998524004789876246784208998899789984798745
Q ss_pred ECCCCCCC---CCCCCCCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH--------HH
Q ss_conf 15898742---2354335674571000238------7894246786899999998299999999815677--------89
Q 001658 844 YDDKKTHI---STRVAGTIGYLAPEYAMRG------HLTEKTDVFAFGVLALETVSGRPNSDPSLDEEKL--------YL 906 (1036)
Q Consensus 844 ~~~~~~~~---~~~~~gt~~y~APE~~~~~------~~~~ksDVwSlGvil~elltG~~p~~~~~~~~~~--------~l 906 (1036)
........ .....||+.|||||++.+. .++.++|||||||++|||+||++|+......... ..
T Consensus 158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~ 237 (303)
T 3hmm_A 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237 (303)
T ss_dssp EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCH
T ss_conf 56777732210464246646269888456545567765706766647999999987899877665223531002545430
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 99999874049531125852436--799999999999998104499999998999999640558
Q 001658 907 LEWAWHLHENNQEIELADPKLIE--FNEEEVKRLIGVALLCTQTLPSLRPSMSRVVAMLCGDME 968 (1036)
Q Consensus 907 ~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~ 968 (1036)
......... ....+|.+.. ...+....+.+++.+||+.||++||||.||+++|++..+
T Consensus 238 ~~~~~~~~~----~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 238 VEEMRKVVC----EQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp HHHHHHHHT----TSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 999999875----025799887655665899999999999760597579599999999998898
Done!