BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001659
         (1036 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EBS|A Chain A, Crystal Structure Anaalysis Of Oligoxyloglucan
           Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
           D465n Mutant Complexed With A Xyloglucan Heptasaccharide
 pdb|2EBS|B Chain B, Crystal Structure Anaalysis Of Oligoxyloglucan
           Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
           D465n Mutant Complexed With A Xyloglucan Heptasaccharide
          Length = 789

 Score = 30.0 bits (66), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 67/178 (37%), Gaps = 24/178 (13%)

Query: 288 QDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGK--QDEGSSWSKRDGGSSWGKQDGG 345
           QDG  ++   DG       DGG S+  +  G   G       + W     G  W     G
Sbjct: 601 QDG--TFYATDGGKFFVSTDGGKSYAAKGAGLVTGTSLMPAVNPWV---AGDVWVPVPEG 655

Query: 346 SSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQ 405
                 D G+S+ +  G ++      G+  SK DG  +         WG    GS  G  
Sbjct: 656 GLFHSTDFGASFTRV-GTANATLVSVGAPKSKSDGKKA-SAPSAVFIWGTDKPGSDIGLY 713

Query: 406 ---DGGSSWSKEPDQQHRKNGGSS------------WGNRDGGSSWSKQTDQQDNQEK 448
              D GS+W++  DQ+H  +G +              G    G  ++  T+++ N+EK
Sbjct: 714 RSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYLGTNGRGIVYADLTNKKSNEEK 771


>pdb|1SQJ|A Chain A, Crystal Structure Analysis Of Oligoxyloglucan
           Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
 pdb|1SQJ|B Chain B, Crystal Structure Analysis Of Oligoxyloglucan
           Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
          Length = 789

 Score = 29.6 bits (65), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 67/178 (37%), Gaps = 24/178 (13%)

Query: 288 QDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGK--QDEGSSWSKRDGGSSWGKQDGG 345
           QDG  ++   DG       DGG S+  +  G   G       + W     G  W     G
Sbjct: 601 QDG--TFYATDGGKFFVSTDGGKSYAAKGAGLVTGTSLMPAVNPWV---AGDVWVPVPEG 655

Query: 346 SSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQ 405
                 D G+S+ +  G ++      G+  SK DG  +         WG    GS  G  
Sbjct: 656 GLFHSTDFGASFTRV-GTANATLVSVGAPKSKSDGKKA-SAPSAVFIWGTDKPGSDIGLY 713

Query: 406 ---DGGSSWSKEPDQQHRKNGGSS------------WGNRDGGSSWSKQTDQQDNQEK 448
              D GS+W++  DQ+H  +G +              G    G  ++  T+++ N+EK
Sbjct: 714 RSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYLGTNGRGIVYADLTNKKSNEEK 771


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.302    0.125    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,373,770
Number of Sequences: 62578
Number of extensions: 1224537
Number of successful extensions: 1351
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1210
Number of HSP's gapped (non-prelim): 98
length of query: 1036
length of database: 14,973,337
effective HSP length: 109
effective length of query: 927
effective length of database: 8,152,335
effective search space: 7557214545
effective search space used: 7557214545
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 56 (26.2 bits)