BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001659
         (1036 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P82003|PTSP_BOMMO Prothoracicostatic peptide OS=Bombyx mori PE=1 SV=2
          Length = 274

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 91/175 (52%), Gaps = 48/175 (27%)

Query: 249 WAK---QDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAK 305
           WAK   QD  S+WGK+        QD  S+WGK+      G QD  S+WGK+      A 
Sbjct: 52  WAKRAWQDMSSAWGKR------AWQDLNSAWGKR------GWQDLNSAWGKR------AW 93

Query: 306 QDGGSSWGK---QDRGSSWGKQDEGSSWSKR---DGGSSWGKQDGGSSLAKQDGGSSWGK 359
           QD  S+WGK   QD  S+WGK+D+  +  K+   D  S WGK+      A QD  S+WGK
Sbjct: 94  QDLNSAWGKRGWQDLNSAWGKRDDDEAMEKKSWQDLNSVWGKR------AWQDLNSAWGK 147

Query: 360 QDGGSSLGKQDGGSSWSKQ---DGGSSWGK---QDGGSSWGK---QDGGSSWGKQ 405
           +        QD  S+W K+   D  S WGK   QD  S+WGK   QD  S+WGK+
Sbjct: 148 R------AWQDLNSAWGKRGWNDISSVWGKRAWQDLNSAWGKRAWQDMSSAWGKR 196


>sp|Q86B20|EIF3A_DICDI Eukaryotic translation initiation factor 3 subunit A
           OS=Dictyostelium discoideum GN=eif3A PE=1 SV=1
          Length = 1030

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 314 KQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGS 373
           K D G  WG++++     + +GG  WG+++      + +GG  WGK++      + +GG 
Sbjct: 809 KADEGDRWGRREDAPPPRRDEGGDRWGRREDAPPPRRDEGGDRWGKREDAPPPRRDEGG- 867

Query: 374 SWSKQDGGSSWGKQDGGSSWGKQDGGSSWG 403
                     WG++D      + +GG  WG
Sbjct: 868 ----------WGRRDDAPPPRRDEGGDRWG 887


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.302    0.127    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,377,440
Number of Sequences: 539616
Number of extensions: 31242623
Number of successful extensions: 274161
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 1661
Number of HSP's that attempted gapping in prelim test: 73704
Number of HSP's gapped (non-prelim): 62571
length of query: 1036
length of database: 191,569,459
effective HSP length: 128
effective length of query: 908
effective length of database: 122,498,611
effective search space: 111228738788
effective search space used: 111228738788
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 67 (30.4 bits)