Query 001659
Match_columns 1036
No_of_seqs 94 out of 109
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 06:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3973 Uncharacterized conser 95.7 0.041 8.8E-07 61.5 8.6 12 763-774 447-458 (465)
2 KOG3262 H/ACA small nucleolar 94.9 0.049 1.1E-06 56.7 6.0 29 738-768 185-213 (215)
3 KOG3973 Uncharacterized conser 93.9 0.21 4.5E-06 56.1 8.5 13 763-775 442-454 (465)
4 KOG3262 H/ACA small nucleolar 92.5 0.26 5.7E-06 51.5 6.1 40 714-755 171-211 (215)
5 PTZ00146 fibrillarin; Provisio 90.6 0.53 1.1E-05 51.2 6.3 6 837-842 110-115 (293)
6 KOG1999 RNA polymerase II tran 30.9 5.1E+02 0.011 33.6 12.2 29 375-403 836-868 (1024)
7 PF14680 FANCI_HD2: FANCI heli 14.2 98 0.0021 33.0 1.6 24 6-29 46-69 (234)
8 KOG0116 RasGAP SH3 binding pro 13.0 3.2E+02 0.007 31.9 5.3 51 715-768 365-419 (419)
9 PF03032 Brevenin: Brevenin/es 12.4 1.4E+02 0.003 25.6 1.7 13 9-21 3-15 (46)
10 PF07172 GRP: Glycine rich pro 11.9 5.1E+02 0.011 24.7 5.4 45 697-743 46-90 (95)
No 1
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.65 E-value=0.041 Score=61.46 Aligned_cols=12 Identities=58% Similarity=1.069 Sum_probs=4.6
Q ss_pred CCCCCCCCCCCC
Q 001659 763 GGRGRGRRDQGG 774 (1036)
Q Consensus 763 GGrGr~~rg~~g 774 (1036)
++|||++.+..|
T Consensus 447 ggrgrgggggrg 458 (465)
T KOG3973|consen 447 GGRGRGGGGGRG 458 (465)
T ss_pred CCCCCCCCCCCc
Confidence 334444333333
No 2
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.049 Score=56.69 Aligned_cols=29 Identities=66% Similarity=1.319 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001659 738 EGFGGRGGSDRGGFGGRGSSDRGGFGGRGRG 768 (1036)
Q Consensus 738 GGFgGRGgG~RGGFgGrGgG~RGGfGGrGr~ 768 (1036)
++|+++ ++.|++|.+|+ +.|++|++|+|.
T Consensus 185 Gg~rgg-gg~rGG~~~Rg-g~ggg~rgrgR~ 213 (215)
T KOG3262|consen 185 GGFRGG-GGSRGGFRGRG-GHGGGFRGRGRG 213 (215)
T ss_pred CcccCC-CCCCCCccccC-CCCCCCCCCCCC
Confidence 344433 23455555443 356777777765
No 3
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=93.93 E-value=0.21 Score=56.07 Aligned_cols=13 Identities=62% Similarity=1.247 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCC
Q 001659 763 GGRGRGRRDQGGG 775 (1036)
Q Consensus 763 GGrGr~~rg~~gg 775 (1036)
++|+.++|+++||
T Consensus 442 ggr~gggrgrggg 454 (465)
T KOG3973|consen 442 GGRDGGGRGRGGG 454 (465)
T ss_pred CCCCCCCCCCCCC
Confidence 3444444444444
No 4
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=92.51 E-value=0.26 Score=51.54 Aligned_cols=40 Identities=60% Similarity=1.174 Sum_probs=18.5
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001659 714 DRGGFGGRGRT-NRGGYGGRGRFDREGFGGRGGSDRGGFGGRG 755 (1036)
Q Consensus 714 gRGGFGGrggG-~RGGfGGrgrGgRGGFgGRGgG~RGGFgGrG 755 (1036)
.|++|++++++ .|++|+++ .+.|++|.+|+ +.+++|++++
T Consensus 171 ~rGg~~grGrgg~~Gg~rgg-gg~rGG~~~Rg-g~ggg~rgrg 211 (215)
T KOG3262|consen 171 GRGGFGGRGRGGGGGGFRGG-GGSRGGFRGRG-GHGGGFRGRG 211 (215)
T ss_pred CcCCCCCCCCCCCCCcccCC-CCCCCCccccC-CCCCCCCCCC
Confidence 45555555432 23444443 23455554432 2355555544
No 5
>PTZ00146 fibrillarin; Provisional
Probab=90.55 E-value=0.53 Score=51.24 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=2.9
Q ss_pred CCCCCC
Q 001659 837 WNNSNT 842 (1036)
Q Consensus 837 Wn~s~s 842 (1036)
||--+|
T Consensus 110 w~p~rS 115 (293)
T PTZ00146 110 WNPFRS 115 (293)
T ss_pred eCCccc
Confidence 455444
No 6
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=30.92 E-value=5.1e+02 Score=33.59 Aligned_cols=29 Identities=38% Similarity=0.980 Sum_probs=15.7
Q ss_pred CccCCCCCCCCcCC--CCCCCCcCC--CCCCCC
Q 001659 375 WSKQDGGSSWGKQD--GGSSWGKQD--GGSSWG 403 (1036)
Q Consensus 375 W~k~~gGssw~kqd--GGSsWGKqd--ggssWG 403 (1036)
|+..-.|++|.++. +.++|++++ .+|.|+
T Consensus 836 ~~a~Tpg~~~~~~~~~~~~~~~g~~~~~gsa~~ 868 (1024)
T KOG1999|consen 836 YSAPTPGSNWGSTGGGGAPAWPGTPNGNGSAWG 868 (1024)
T ss_pred cCCCCCCCCCCcCCCCCCcCCCCCCCCCccccc
Confidence 55555666666543 345566653 455554
No 7
>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=14.18 E-value=98 Score=33.00 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhcccccCC
Q 001659 6 QINVKKMLYHAFFLLLQLHAESNP 29 (1036)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~p 29 (1036)
|..||.|||+-|+-++...|+.-|
T Consensus 46 Qa~VR~~LY~gl~~~v~~n~~l~~ 69 (234)
T PF14680_consen 46 QADVRLMLYEGLYDVVTRNPQLAP 69 (234)
T ss_dssp -HHHHHHHHHHHHHHHHHSGGGHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccHH
No 8
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=12.96 E-value=3.2e+02 Score=31.94 Aligned_cols=51 Identities=45% Similarity=0.773 Sum_probs=0.0
Q ss_pred CCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q 001659 715 RGGFGGRGR---TNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGG-FGGRGRG 768 (1036)
Q Consensus 715 RGGFGGrgg---G~RGGfGGrgrGgRGGFgGRGgG~RGGFgGrGgG~RGG-fGGrGr~ 768 (1036)
|..|.|.+. +-+...++++.++|+.|.+|++..+ .|++..-||+ |...++.
T Consensus 365 ~~~~~g~~~~~~~~~~~~g~~~~~gr~~~~~~gg~~~---~g~~~~~~gg~~~~~g~~ 419 (419)
T KOG0116|consen 365 RPGFRGNGNNRSGRGNRGGGRGPGGRGRGGGRGGGRG---DGGGGPPRGGMFPRAGQG 419 (419)
T ss_pred cccccccccCcccccCCCCCCCCCCCCCCCCCCCCcC---CCCCCCCcCccccccCCC
No 9
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=12.41 E-value=1.4e+02 Score=25.55 Aligned_cols=13 Identities=46% Similarity=0.513 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 001659 9 VKKMLYHAFFLLL 21 (1036)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (1036)
+||-|+-.|||++
T Consensus 3 lKKsllLlfflG~ 15 (46)
T PF03032_consen 3 LKKSLLLLFFLGT 15 (46)
T ss_pred chHHHHHHHHHHH
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=11.86 E-value=5.1e+02 Score=24.68 Aligned_cols=45 Identities=42% Similarity=0.801 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001659 697 GSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGR 743 (1036)
Q Consensus 697 ggGg~rGRGGFgGrgGggRGGFGGrggG~RGGfGGrgrGgRGGFgGR 743 (1036)
.+....+++++.+.+ ..+..+++..+.+++|++++.+.++++++.
T Consensus 46 ~g~g~~ggGGy~GgG--g~g~~GGG~~gggGgygGgG~G~~g~~GgG 90 (95)
T PF07172_consen 46 GGGGYGGGGGYGGGG--GGGYGGGGYGGGGGGYGGGGGGYGGGYGGG 90 (95)
T ss_pred CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Done!