Query 001659
Match_columns 1036
No_of_seqs 107 out of 109
Neff 2.2
Searched_HMMs 29240
Date Tue Mar 26 16:18:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001659.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_957-961//hhsearch_pdb/001659hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r15_A Factor H binding protei 1.0 1 1 14.5 2.0 26 7-32 19-44 (93)
2 2w7t_A CTP synthetase, putativ 1.0 1 1 13.0 -3.0 11 8-18 27-37 (273)
3 1zq1_A Glutamyl-tRNA(Gln) amid 1.0 1 1 12.5 1.8 26 10-35 179-204 (438)
4 2him_A L-asparaginase 1; hydro 1.0 1 1 11.8 1.8 26 10-35 112-137 (358)
5 1o7j_A L-asparaginase; atomic 1.0 1 1 11.7 1.9 25 10-35 96-120 (327)
6 1agx_A Glutaminase-asparaginas 1.0 1 1 11.7 1.9 25 10-35 93-117 (331)
7 1wls_A L-asparaginase; structu 1.0 1 1 11.5 1.5 19 12-30 86-104 (328)
8 2wlt_A L-asparaginase; hydrola 1.0 1 1 11.4 1.9 18 12-30 98-115 (332)
9 1wsa_A Asparaginase, asparagin 1.0 1 1 11.4 1.9 18 12-30 96-113 (330)
10 2d6f_A Glutamyl-tRNA(Gln) amid 1.0 1 1 11.0 1.8 18 12-30 180-197 (435)
No 1
>3r15_A Factor H binding protein; protein binding; 1.70A {Treponema denticola} PDB: 3qz0_A
Probab=1.00 E-value=1 Score=14.53 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 34878999999988730435588998
Q 001659 7 INVKKMLYHAFFLLLQLHAESNPANA 32 (1036)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~p~n~ 32 (1036)
-+..|..|++|.-.|.-++|.+|+-+
T Consensus 19 n~~Qk~~Yd~FI~~Le~~ak~~~~~A 44 (93)
T 3r15_A 19 NTAQKAHYEKFINALENELKTRHIPA 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCCBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 17889999999999999876079858
No 2
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=1.00 E-value=1 Score=13.00 Aligned_cols=11 Identities=18% Similarity=0.214 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 48789999999
Q 001659 8 NVKKMLYHAFF 18 (1036)
Q Consensus 8 ~~~~~~~~~~~ 18 (1036)
.|.+.|.|+..
T Consensus 27 S~~~aL~~~g~ 37 (273)
T 2w7t_A 27 SVLQCFEHCQI 37 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 3
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=1.00 E-value=1 Score=12.48 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78999999988730435588998898
Q 001659 10 KKMLYHAFFLLLQLHAESNPANAFGS 35 (1036)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~n~~~s 35 (1036)
-.|-|.||||-|+|+.-.-||--.++
T Consensus 179 DTMeeTA~~Lsl~l~~~~KPVVlTGA 204 (438)
T 1zq1_A 179 DTMGYTAAALSFMLRNLGKPVVLVGA 204 (438)
T ss_dssp SSHHHHHHHHHHHEESCCSCEEEECC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 16999999999987578998899698
No 4
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=1.00 E-value=1 Score=11.82 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78999999988730435588998898
Q 001659 10 KKMLYHAFFLLLQLHAESNPANAFGS 35 (1036)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~n~~~s 35 (1036)
..|-|.||||-|+|+.-.-||--.++
T Consensus 112 DTmeeTA~~Ls~~l~~~~kPVVlTGA 137 (358)
T 2him_A 112 DTMAYTASALSFMLENLGKPVIVTGS 137 (358)
T ss_dssp TTHHHHHHHHHHHEETCCSCEEEECC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 27999999999987348998899699
No 5
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=1.00 E-value=1 Score=11.73 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78999999988730435588998898
Q 001659 10 KKMLYHAFFLLLQLHAESNPANAFGS 35 (1036)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~n~~~s 35 (1036)
..|-|.||||-|+|+ -.-||--.++
T Consensus 96 DTmeeTA~~Ls~~l~-~~kPVVlTGA 120 (327)
T 1o7j_A 96 DTVEESAYFLHLTVK-SDKPVVFVAA 120 (327)
T ss_dssp TTHHHHHHHHHHHCC-CCSCEEEECC
T ss_pred HHHHHHHHHHHHHHC-CCCCEEEECC
T ss_conf 049999999999717-8998899698
No 6
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=1.00 E-value=1 Score=11.70 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78999999988730435588998898
Q 001659 10 KKMLYHAFFLLLQLHAESNPANAFGS 35 (1036)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~n~~~s 35 (1036)
..|-|.||||-|+|+ -.-||--.++
T Consensus 93 DTmeeTA~~Ls~~l~-~~kPVVlTGA 117 (331)
T 1agx_A 93 DTMEETAFFLNLVVH-TDKPIVLVGS 117 (331)
T ss_dssp GGHHHHHHHHHHHCC-CSSCEEEECC
T ss_pred CHHHHHHHHHHHHCC-CCCCEEEECC
T ss_conf 029999999998707-8998899698
No 7
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=1.00 E-value=1 Score=11.45 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999887304355889
Q 001659 12 MLYHAFFLLLQLHAESNPA 30 (1036)
Q Consensus 12 ~~~~~~~~~~~~~~~~~p~ 30 (1036)
|-|.||||-|+|+.-.-||
T Consensus 86 meeTA~~Ls~ll~~~~kPV 104 (328)
T 1wls_A 86 MAYSASMLSFMLRNPPIPI 104 (328)
T ss_dssp HHHHHHHHHHHEESCSSEE
T ss_pred HHHHHHHHHHHHHCCCCCE
T ss_conf 9999999999974799988
No 8
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=1.00 E-value=1 Score=11.45 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999887304355889
Q 001659 12 MLYHAFFLLLQLHAESNPA 30 (1036)
Q Consensus 12 ~~~~~~~~~~~~~~~~~p~ 30 (1036)
|-|.||||-|+|+ -.-||
T Consensus 98 meeTA~~Ls~~l~-~~kPV 115 (332)
T 2wlt_A 98 LEESAYFLNLVLH-STKPV 115 (332)
T ss_dssp HHHHHHHHHHHCC-CSSCE
T ss_pred HHHHHHHHHHHHC-CCCCE
T ss_conf 9999999999707-89988
No 9
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=1.00 E-value=1 Score=11.40 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999887304355889
Q 001659 12 MLYHAFFLLLQLHAESNPA 30 (1036)
Q Consensus 12 ~~~~~~~~~~~~~~~~~p~ 30 (1036)
|-|.||||-|+|+ -.-||
T Consensus 96 meeTA~~Ls~~l~-~~kPV 113 (330)
T 1wsa_A 96 MEETAFFLNLTVK-SQKPV 113 (330)
T ss_dssp HHHHHHHHHHHCC-CSSCE
T ss_pred HHHHHHHHHHHCC-CCCCE
T ss_conf 9999999998707-89988
No 10
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=1.00 E-value=1 Score=11.02 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999887304355889
Q 001659 12 MLYHAFFLLLQLHAESNPA 30 (1036)
Q Consensus 12 ~~~~~~~~~~~~~~~~~p~ 30 (1036)
|-|.||||-|+| .-.-||
T Consensus 180 MeeTA~~Lsl~l-~~~KPV 197 (435)
T 2d6f_A 180 MHYTSAALSFML-RTPVPV 197 (435)
T ss_dssp HHHHHHHHHHHE-ECSSCE
T ss_pred HHHHHHHHHHHH-CCCCCE
T ss_conf 999999999972-899988
Done!