Query 001659
Match_columns 1036
No_of_seqs 107 out of 109
Neff 2.2
Searched_HMMs 13730
Date Tue Mar 26 16:25:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001659.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_957-961//hhsearch_scop/001659hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ocda1 c.88.1.1 (A:2-337) Asp 23.4 12 0.00091 11.9 1.8 27 10-36 91-117 (336)
2 d1ka8a_ a.4.5.20 (A:) P4 origi 21.4 14 0.00099 11.7 1.1 25 7-31 31-55 (100)
3 d1zq1a2 c.88.1.1 (A:76-438) Gl 21.2 14 0.001 11.7 1.8 27 10-36 104-130 (363)
4 d2d6fa2 c.88.1.1 (A:84-435) Gl 17.4 17 0.0012 11.2 1.7 26 10-36 95-120 (352)
5 d1wsaa_ c.88.1.1 (A:) Asparagi 13.4 22 0.0016 10.6 1.9 24 11-35 93-116 (328)
6 d1o7ja_ c.88.1.1 (A:) Asparagi 12.5 23 0.0017 10.5 1.9 26 10-36 94-119 (325)
7 d1agxa_ c.88.1.1 (A:) Glutamin 9.9 29 0.0021 9.9 1.9 25 10-35 93-117 (331)
8 d2fxua1 c.55.1.1 (A:7-146) Act 9.7 30 0.0022 9.9 1.2 21 10-30 77-97 (140)
9 d1tv5a1 c.1.4.1 (A:158-566) Di 7.6 41 0.003 9.1 1.2 20 8-27 5-26 (409)
10 d2a7wa1 a.204.1.4 (A:4-94) Pho 7.0 46 0.0033 8.9 1.5 9 12-20 64-72 (91)
No 1
>d2ocda1 c.88.1.1 (A:2-337) Asparaginase type II {Vibrio cholerae [TaxId: 666]}
Probab=23.36 E-value=12 Score=11.94 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 789999999887304355889988989
Q 001659 10 KKMLYHAFFLLLQLHAESNPANAFGSG 36 (1036)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~n~~~s~ 36 (1036)
-.|-|.||||-|+|+...-||--.++-
T Consensus 91 DTleeTA~~L~~~l~~~~kPVVlTGAm 117 (336)
T d2ocda1 91 DTMAYTASALSFMFENLGKPVIVTGSQ 117 (336)
T ss_dssp TTHHHHHHHHHHHEESCCSCEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 459999999999855899988984655
No 2
>d1ka8a_ a.4.5.20 (A:) P4 origin-binding domain {Bacteriophage P4 [TaxId: 10680]}
Probab=21.42 E-value=14 Score=11.72 Aligned_cols=25 Identities=28% Similarity=0.479 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 3487899999998873043558899
Q 001659 7 INVKKMLYHAFFLLLQLHAESNPAN 31 (1036)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~p~n 31 (1036)
.+..+.||||++--+.-|--.+|+.
T Consensus 31 ~~pR~yLYhAYLaymea~G~~~pLs 55 (100)
T d1ka8a_ 31 RNYRKYLYHAYLAYMEANGYRNVLS 55 (100)
T ss_dssp CCTTTBHHHHHHHHHHHTTCSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 7548888999999999818878840
No 3
>d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Probab=21.15 E-value=14 Score=11.68 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 789999999887304355889988989
Q 001659 10 KKMLYHAFFLLLQLHAESNPANAFGSG 36 (1036)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~n~~~s~ 36 (1036)
-.|-|.||||-|+|+.-..||--.++-
T Consensus 104 DTl~eTA~~L~~~l~~~~kPVVlTGa~ 130 (363)
T d1zq1a2 104 DTMGYTAAALSFMLRNLGKPVVLVGAQ 130 (363)
T ss_dssp SSHHHHHHHHHHHEESCCSCEEEECCS
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 739999999999724899638996334
No 4
>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=17.38 E-value=17 Score=11.21 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 789999999887304355889988989
Q 001659 10 KKMLYHAFFLLLQLHAESNPANAFGSG 36 (1036)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~n~~~s~ 36 (1036)
-.|-|.||||-|+|+. .-||--.++-
T Consensus 95 DTl~~TA~~Ls~~l~~-~kPVVlTGa~ 120 (352)
T d2d6fa2 95 DTMHYTSAALSFMLRT-PVPVVFTGAQ 120 (352)
T ss_dssp TTHHHHHHHHHHHEEC-SSCEEEECCS
T ss_pred HHHHHHHHHHHHHHCC-CCCEEEECCC
T ss_conf 2699999999987266-9998996555
No 5
>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes [TaxId: 844]}
Probab=13.44 E-value=22 Score=10.62 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8999999988730435588998898
Q 001659 11 KMLYHAFFLLLQLHAESNPANAFGS 35 (1036)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~p~n~~~s 35 (1036)
.|-|.||||-|+|+. .-||--.++
T Consensus 93 Tm~~ta~~Ls~~~~~-~kPVV~TGa 116 (328)
T d1wsaa_ 93 TMEETAFFLNLTVKS-QKPVVLVGA 116 (328)
T ss_dssp SHHHHHHHHHHHCCC-SSCEEEECC
T ss_pred CHHHHHHHHHHHCCC-CCCEEEECC
T ss_conf 499999999986157-998798436
No 6
>d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi [TaxId: 556]}
Probab=12.49 E-value=23 Score=10.46 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 789999999887304355889988989
Q 001659 10 KKMLYHAFFLLLQLHAESNPANAFGSG 36 (1036)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~n~~~s~ 36 (1036)
..|-|.||||-|+|.. .-||--.++-
T Consensus 94 DTm~~ta~~Ls~~l~~-~kPVV~TGs~ 119 (325)
T d1o7ja_ 94 DTVEESAYFLHLTVKS-DKPVVFVAAM 119 (325)
T ss_dssp TTHHHHHHHHHHHCCC-CSCEEEECCS
T ss_pred CCHHHHHHHHHHHHCC-CCCEEEECCC
T ss_conf 7599999999998457-9986995345
No 7
>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter glutaminasificans [TaxId: 474]}
Probab=9.86 E-value=29 Score=9.93 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78999999988730435588998898
Q 001659 10 KKMLYHAFFLLLQLHAESNPANAFGS 35 (1036)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~n~~~s 35 (1036)
..|-|.||||-|+|+ -.-||--.+|
T Consensus 93 DTm~~TA~~Ls~~l~-~~kPVVlTGs 117 (331)
T d1agxa_ 93 DTMEETAFFLNLVVH-TDKPIVLVGS 117 (331)
T ss_dssp GGHHHHHHHHHHHCC-CSSCEEEECC
T ss_pred CCHHHHHHHHHHHHC-CCCCEEEEEE
T ss_conf 759999999999864-5872899710
No 8
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.66 E-value=30 Score=9.86 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 789999999887304355889
Q 001659 10 KKMLYHAFFLLLQLHAESNPA 30 (1036)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~ 30 (1036)
.+++.|+|+..|...|+..|+
T Consensus 77 e~~~~~~~~~~l~~~~~~~pv 97 (140)
T d2fxua1 77 EKIWHHTFYNELRVAPEEHPT 97 (140)
T ss_dssp HHHHHHHHHTTSCCCGGGSCE
T ss_pred HHHHHHHHHHHCCCCCCCCCC
T ss_conf 999998664014648777864
No 9
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}
Probab=7.61 E-value=41 Score=9.11 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=12.9
Q ss_pred HHHHHHHHHHH--HHHHCCCCC
Q ss_conf 48789999999--887304355
Q 001659 8 NVKKMLYHAFF--LLLQLHAES 27 (1036)
Q Consensus 8 ~~~~~~~~~~~--~~~~~~~~~ 27 (1036)
|-.-|||+.|+ |++.|.||+
T Consensus 5 ~~~~~~y~~~~~~~l~~l~pe~ 26 (409)
T d1tv5a1 5 NPEFFLYDIFLKFCLKYIDGEI 26 (409)
T ss_dssp STTCHHHHHHHHHHHHHSCHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHH
T ss_conf 8326789999999852599899
No 10
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE {Chromobacterium violaceum [TaxId: 536]}
Probab=6.99 E-value=46 Score=8.85 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q ss_conf 999999988
Q 001659 12 MLYHAFFLL 20 (1036)
Q Consensus 12 ~~~~~~~~~ 20 (1036)
+|||.+.|+
T Consensus 64 LlyHllVlL 72 (91)
T d2a7wa1 64 LWFHTMVLL 72 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
Done!