Query 001660
Match_columns 1036
No_of_seqs 409 out of 1786
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:16:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 8E-160 2E-164 1482.8 82.2 791 195-1016 27-858 (900)
2 KOG1041 Translation initiation 100.0 6E-145 1E-149 1336.4 74.7 778 200-1013 44-830 (876)
3 KOG1042 Germ-line stem cell di 100.0 7E-129 2E-133 1076.9 53.8 725 206-1033 87-832 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 7.3E-98 2E-102 868.4 40.5 416 567-1014 1-422 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 1.6E-93 3.5E-98 840.5 44.8 440 535-1029 2-448 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 9.2E-85 2E-89 752.3 40.5 380 580-1012 2-389 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 6.3E-70 1.4E-74 611.2 24.4 298 698-1031 1-301 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 3.3E-45 7.2E-50 425.7 27.7 268 694-1008 109-394 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 1.1E-22 2.4E-27 200.2 10.2 133 409-546 1-135 (135)
10 cd02846 PAZ_argonaute_like PAZ 99.8 1.9E-20 4.1E-25 178.8 13.3 113 409-522 2-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 3.5E-20 7.6E-25 176.5 11.7 112 408-522 1-115 (115)
12 cd02845 PAZ_piwi_like PAZ doma 99.7 3E-18 6.5E-23 162.6 9.4 105 409-522 2-114 (117)
13 cd02844 PAZ_CAF_like PAZ domai 99.5 4.5E-14 9.8E-19 136.9 6.4 84 436-523 27-133 (135)
14 PF08699 DUF1785: Domain of un 99.4 9.4E-14 2E-18 111.2 2.8 51 357-408 2-52 (52)
15 PF12764 Gly-rich_Ago1: Glycin 99.1 2.2E-10 4.7E-15 100.8 8.6 68 126-193 34-103 (104)
16 COG1431 Argonaute homolog, imp 99.0 4E-09 8.6E-14 119.7 16.7 294 638-1011 355-663 (685)
17 cd02843 PAZ_dicer_like PAZ dom 98.6 4.4E-08 9.6E-13 91.6 5.4 67 438-507 39-106 (122)
18 KOG1596 Fibrillarin and relate 94.1 0.18 3.8E-06 53.0 7.9 8 232-239 184-191 (317)
19 KOG1596 Fibrillarin and relate 93.9 0.25 5.3E-06 52.0 8.5 7 271-277 156-162 (317)
20 PF12764 Gly-rich_Ago1: Glycin 93.4 0.14 3E-06 46.2 4.9 50 124-173 39-92 (104)
21 COG4371 Predicted membrane pro 90.8 0.7 1.5E-05 48.5 7.2 12 169-180 159-170 (334)
22 KOG4307 RNA binding protein RB 83.8 13 0.00028 44.9 12.7 12 215-226 869-880 (944)
23 KOG3915 Transcription regulato 83.0 4.1 8.9E-05 46.5 8.0 12 225-236 182-193 (641)
24 PF13032 DUF3893: Domain of un 80.3 1.6 3.4E-05 43.0 3.3 50 960-1009 66-115 (138)
25 PF05642 Sporozoite_P67: Sporo 79.8 56 0.0012 38.9 15.7 20 530-549 587-606 (727)
26 KOG3915 Transcription regulato 77.0 11 0.00023 43.4 8.7 11 511-521 371-381 (641)
27 smart00157 PRP Major prion pro 76.1 17 0.00038 36.8 9.0 35 227-261 158-198 (217)
28 PF08459 UvrC_HhH_N: UvrC Heli 71.9 21 0.00046 35.9 8.7 105 773-913 9-120 (155)
29 PHA00370 III attachment protei 71.3 12 0.00027 39.6 7.0 8 309-316 256-263 (297)
30 TIGR00194 uvrC excinuclease AB 69.5 32 0.0007 42.2 11.3 111 775-919 381-499 (574)
31 PF05642 Sporozoite_P67: Sporo 63.5 2.7E+02 0.0059 33.5 16.3 13 638-650 590-602 (727)
32 KOG1924 RhoA GTPase effector D 62.4 37 0.00081 41.9 9.4 14 213-226 636-649 (1102)
33 cd06559 Endonuclease_V Endonuc 61.1 39 0.00084 35.8 8.6 81 773-871 23-105 (208)
34 PRK12306 uvrC excinuclease ABC 54.7 1E+02 0.0022 37.5 11.7 108 774-918 365-477 (519)
35 KOG4307 RNA binding protein RB 54.2 1.2E+02 0.0026 37.2 11.6 10 227-236 896-905 (944)
36 KOG1924 RhoA GTPase effector D 54.1 58 0.0013 40.3 9.2 10 339-348 700-709 (1102)
37 PRK11617 endonuclease V; Provi 50.6 2.4E+02 0.0051 30.3 12.3 35 972-1013 178-212 (224)
38 PRK14671 uvrC excinuclease ABC 43.6 1.7E+02 0.0036 36.5 11.4 107 774-917 414-525 (621)
39 PRK14672 uvrC excinuclease ABC 42.8 1.9E+02 0.0042 36.1 11.5 109 774-918 453-565 (691)
40 PRK00558 uvrC excinuclease ABC 37.4 2.8E+02 0.006 34.5 12.0 100 774-909 382-486 (598)
41 PRK14667 uvrC excinuclease ABC 36.3 2.9E+02 0.0062 34.1 11.7 107 774-917 360-471 (567)
42 PRK14669 uvrC excinuclease ABC 34.9 3E+02 0.0064 34.4 11.6 108 774-917 395-507 (624)
43 KOG3875 Peroxisomal biogenesis 31.9 1.6E+02 0.0036 32.6 7.6 18 509-526 317-334 (362)
44 PRK14670 uvrC excinuclease ABC 31.9 4.6E+02 0.0099 32.4 12.4 111 774-917 357-472 (574)
45 COG1515 Nfi Deoxyinosine 3'end 30.5 6.9E+02 0.015 26.6 12.2 46 959-1011 163-208 (212)
46 PF04493 Endonuclease_5: Endon 29.9 97 0.0021 32.8 5.5 30 974-1009 175-204 (206)
47 PRK14666 uvrC excinuclease ABC 29.2 4.2E+02 0.0091 33.3 11.5 100 774-908 471-571 (694)
48 cd01457 vWA_ORF176_type VWA OR 28.0 2.7E+02 0.0058 28.9 8.6 69 835-908 78-151 (199)
49 PF04094 DUF390: Protein of un 27.8 1E+03 0.022 30.0 13.8 10 896-905 795-804 (828)
50 KOG0037 Ca2+-binding protein, 27.6 1E+02 0.0022 32.6 5.0 9 341-349 160-168 (221)
51 KOG0037 Ca2+-binding protein, 26.4 1.3E+02 0.0028 31.9 5.5 10 213-222 95-104 (221)
52 KOG3875 Peroxisomal biogenesis 26.1 2.1E+02 0.0045 31.9 7.2 10 214-223 151-160 (362)
53 PLN03138 Protein TOC75; Provis 25.8 50 0.0011 41.8 2.9 12 804-815 642-653 (796)
54 PF09373 PMBR: Pseudomurein-bi 24.4 79 0.0017 22.9 2.6 19 847-865 15-33 (33)
55 PF00763 THF_DHG_CYH: Tetrahyd 23.9 3.2E+02 0.007 26.0 7.5 58 693-752 27-85 (117)
56 PF04094 DUF390: Protein of un 23.7 3.7E+02 0.0081 33.4 9.3 9 408-416 369-377 (828)
57 PF12683 DUF3798: Protein of u 22.4 3.8E+02 0.0081 29.6 8.3 100 625-733 132-235 (275)
58 KOG3123 Diphthine synthase [Tr 21.9 1.3E+02 0.0027 31.6 4.4 48 694-746 130-177 (272)
59 PF07555 NAGidase: beta-N-acet 21.1 9.7E+02 0.021 27.0 11.7 104 646-754 18-146 (306)
60 PLN03138 Protein TOC75; Provis 20.8 72 0.0016 40.4 2.9 19 510-528 364-383 (796)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=8.4e-160 Score=1482.78 Aligned_cols=791 Identities=37% Similarity=0.637 Sum_probs=681.1
Q ss_pred CCCCccCcCCCCCCCCCCcceEeeceEEEecC--CCceEEeeeeecCc----cccchhhHHHHHHHHHHHHhhccCCccc
Q 001660 195 SSKSVRFPLRPGRGSTGTRCIVKANHFFAELP--DKDLHQYDVTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRLP 268 (1036)
Q Consensus 195 ~~~~~~~p~RP~~Gt~G~~i~l~tN~f~l~~~--~~~iy~YdV~i~pe----~~~k~~~r~i~~~l~~~~~~~~~g~~~~ 268 (1036)
+.+...+++||++||.|++|+|.||||+|+++ +..||||||+|.|+ +.+++++++|++++++++... +.+..+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 105 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKDF 105 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCce
Confidence 33444678899999999999999999999975 67899999999964 445678899999888766543 444467
Q ss_pred cccCcceEEecCCCCCCcceEEEEEecCCCC------------CC---------CCCCCcEEEEEEEEeeeechhhHHHH
Q 001660 269 AYDGRKSLYTAGPLPFLSKEFRITLLDDDDG------------QG---------GQRREREFKVVIKLAARADLHHLGLF 327 (1036)
Q Consensus 269 ~yDG~~~lys~~~Lp~~~~~~~v~~~~~~~~------------~~---------~~~~~~~~~v~I~~~~~~~l~~l~~~ 327 (1036)
+|||+++|||+.+||++..+|.|++.++++. .. ...+.+.|+|+|++++++++.+|.+|
T Consensus 106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~ 185 (900)
T PLN03202 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA 185 (900)
T ss_pred eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence 9999999999999998777788877542111 00 01246889999999999999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHccCCCCC-ccccCccccCCCCCCcccCCCCeEEEeeeeeeeecccCeeEEeeecceeeEe
Q 001660 328 LQGRQADAPQEALQVLDIVLRELPTTR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFI 406 (1036)
Q Consensus 328 l~~~~~~~~~~~lq~Lnivlr~~~~~~-~~~~gr~ff~~~~~~~~~l~~g~e~~~G~~~Svr~~~~~l~LniD~~~~~F~ 406 (1036)
|.+.....+.++||+||||||+.++.. ++.+||+||+++.....+++.|+|+|+||++|||+++++|+||||+++++||
T Consensus 186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 999888888999999999999987654 8899999997654445678999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEeccCCCCCCceeeeecCC--------C
Q 001660 407 EPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES--------G 478 (1036)
Q Consensus 407 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~~~~~~F~~~~~--------g 478 (1036)
+++||+|+|.++.+... ....++.+++++|+|++|.++|+ +++|+|.+|++.++++.+|++++. +
T Consensus 266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~ 338 (900)
T PLN03202 266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVET 338 (900)
T ss_pred cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence 99999999998764321 11234567999999999999998 589999999999999999986531 3
Q ss_pred cEeeHHHHHHHHcCCccCCC-CCceEEecCCCCCccccccceEeccCccccccCCHHHHHHHHHHhcCCchHhHHHHHHH
Q 001660 479 TLKSVVEYFYETYGFVIQHT-QWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQT 557 (1036)
Q Consensus 479 ~~iSv~~Yf~~~Y~i~l~~p-~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~~l~~~q~~~~ik~~~~~P~~R~~~i~~~ 557 (1036)
++|||+|||+++|||+|+|| +||||++++.++++|||||||.|++||+++++|++.|+++||++|+.+|.+|.+.|.++
T Consensus 339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~ 418 (900)
T PLN03202 339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA 418 (900)
T ss_pred ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 58999999999999999996 99999999888899999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCccccccCeEEcccceeeeeEEeCCCceeecCCCCccccCCcCccccccCceeeeCceeceeEEEEecCCcc
Q 001660 558 VHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQ 637 (1036)
Q Consensus 558 ~~~~~~~~~~~l~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~g~Wn~~~~~f~~~~~l~~W~vv~~~~~~~ 637 (1036)
++.++++.+++|++|||+|+++|++|+||+|++|.|.|+++. .+.|.+|+||+++++|+.++.+++|+|++|.++
T Consensus 419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~-- 493 (900)
T PLN03202 419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR-- 493 (900)
T ss_pred HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence 998888888999999999999999999999999999998742 245789999999999999999999999988654
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCc--hhHHHHHHHHHHHHHHhcCCCCCccEEEEEecCC-CCchhHHH
Q 001660 638 DSIARGFCFELAQMCYISGMAFNPEPVIPPISARP--EHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDL 714 (1036)
Q Consensus 638 ~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~-~~~~Y~~I 714 (1036)
..+.+|++.|.+.|+.+||.+..++.+.....+. ...+..++..++.+.++++ ..++|||||||++ +.++|+.|
T Consensus 494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~qlv~vIlp~~~~~~~Y~~I 570 (900)
T PLN03202 494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP--GPPQFLLCILPERKNSDIYGPW 570 (900)
T ss_pred -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc--CCCeEEEEEEcCCCCcchHHHH
Confidence 2578999999999999999997643221111000 1112334455554444332 4699999999974 67899999
Q ss_pred HHHhhcccCceeeeeeecccccccHHHHHHHHHHHHhhcCccccccccccccCCCCcCCCCeEEEEEEecCCCCCCCCCC
Q 001660 715 KRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP 794 (1036)
Q Consensus 715 K~~~e~~~gI~TQci~~~t~~K~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~~~~p 794 (1036)
|++||+++||+||||... +.++||+.|||||||+||||+||.+..+....+|++.+.+|||||+||+||+++....|
T Consensus 571 K~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~p 647 (900)
T PLN03202 571 KKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVP 647 (900)
T ss_pred HHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCC
Confidence 999999999999999654 35789999999999999999999887654556888888899999999999998764579
Q ss_pred ceeEEEEeeCCCCccceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHHHHHh-CCCCceEEEEecCCCch
Q 001660 795 SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRAT-GQKPQRIIFYRDGVSEG 873 (1036)
Q Consensus 795 SiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~-g~~P~~IIiyRDGVseg 873 (1036)
||||+|||+||+++++|++.+++|.+++|+|++|+....+ ..+++||+++|+.|++.+ +.+|++|||||||||||
T Consensus 648 Siaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseG 723 (900)
T PLN03202 648 SIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSES 723 (900)
T ss_pred ceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHH
Confidence 9999999999889999999999999999999988532221 235789999999999875 68999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeecccccccccCCCCCCccCcCCCCcCceeeeccccCCCccceEeec
Q 001660 874 QFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCS 953 (1036)
Q Consensus 874 q~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~i~~p~~~dFyL~S 953 (1036)
||.+|+++|+++|++||+++.++|+|+||||||+||||||||+.+ +.+||+||||||++||||..|||||||
T Consensus 724 Q~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~S 795 (900)
T PLN03202 724 QFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCA 795 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEec
Confidence 999999999999999999998889999999999999999999863 358999999999999999999999999
Q ss_pred cCCcccccCCceeEEEecCCCCCHHHHHHHHHHHhhcccccCcccccccccccccccchhhhh
Q 001660 954 HAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIGKLSLLPAFSYSSACT 1016 (1036)
Q Consensus 954 h~~~qGTarPthY~Vl~de~~~~~d~lq~lT~~LC~~y~r~t~sVsip~P~~yA~~~~~~~~~ 1016 (1036)
|.++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||+++..+.+
T Consensus 796 h~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~ 858 (900)
T PLN03202 796 HAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQ 858 (900)
T ss_pred ccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999987665544443
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-145 Score=1336.35 Aligned_cols=778 Identities=41% Similarity=0.659 Sum_probs=678.0
Q ss_pred cCcCCCCCCCCCCcceEeeceEEEecC--CCc-eEEeeeeecCccccchhhH-HHHHHHHHHHHhhccCCccccccCcce
Q 001660 200 RFPLRPGRGSTGTRCIVKANHFFAELP--DKD-LHQYDVTITPEVTSRGVNR-AVMEQLVKLYRESHLGKRLPAYDGRKS 275 (1036)
Q Consensus 200 ~~p~RP~~Gt~G~~i~l~tN~f~l~~~--~~~-iy~YdV~i~pe~~~k~~~r-~i~~~l~~~~~~~~~g~~~~~yDG~~~ 275 (1036)
..+.||+.|+.|++|.|.||||.+++. +.. +++|+|++.++...+.+++ .++..+++..+...++...++|||+++
T Consensus 44 ~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~~ 123 (876)
T KOG1041|consen 44 FPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQKT 123 (876)
T ss_pred ccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCce
Confidence 445799999999999999999997764 555 9999999999988777764 566666655444445555667999999
Q ss_pred EEecCCCCCCcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHhcCCCCCChHHHHHHHHHHHccCCCCC-
Q 001660 276 LYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTR- 354 (1036)
Q Consensus 276 lys~~~Lp~~~~~~~v~~~~~~~~~~~~~~~~~~~v~I~~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lnivlr~~~~~~- 354 (1036)
|||..+|+.....+.+....+.+ ... |+++|+..+.+.+..+..++.+.....+.+++|+||+++++.++..
T Consensus 124 lyt~~~~~~~~~~~~~~~~~~~~------~~~-~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s~~~ 196 (876)
T KOG1041|consen 124 LYTKLELPEGVVTLDFDVISPKE------WKK-FKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIATSQG 196 (876)
T ss_pred eEeccccccccceEEEEecCCCC------Ccc-eEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhchhc
Confidence 99977777423333333322211 111 9999999998888889889888877889999999999999999877
Q ss_pred ccccCccccCCCCCCcccCCCCeEEEeeeeeeeecccCeeEEeeecceeeEecCccHHHHHHHHhcCCCCCCCCChHHHH
Q 001660 355 YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRV 434 (1036)
Q Consensus 355 ~~~~gr~ff~~~~~~~~~l~~g~e~~~G~~~Svr~~~~~l~LniD~~~~~F~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 434 (1036)
+...+++||.........++.|.|+|.||++|+|+++++++||+|+++++||++.+|+++++++++... +.+.+....
T Consensus 197 ~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~--~~~~~~~~~ 274 (876)
T KOG1041|consen 197 LNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKT--RAFHKDRPL 274 (876)
T ss_pred ccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcc--cccccccch
Confidence 999999999763333455899999999999999999999999999999999999999999999987543 233332233
Q ss_pred HHHHHccceEEEEeecCCccceEEEeccCCCCCCceeeeecCC-CcEeeHHHHHHHHcCCccCCCCCceEEecCCCCCcc
Q 001660 435 KIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES-GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNY 513 (1036)
Q Consensus 435 ~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~~~~~~F~~~~~-g~~iSv~~Yf~~~Y~i~l~~p~lP~v~~g~~~~~~y 513 (1036)
.++++||||+|.++| ++.+|.|+|.+++..++.+.+|++.+. +.++||+|||+++||++|+||+||||+++...+.+|
T Consensus 275 ~~~~~lkgL~v~~~h-~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~~~~ 353 (876)
T KOG1041|consen 275 DIKKALKGLKVYVTH-GKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKRENF 353 (876)
T ss_pred hHHHHhhCcEEEEec-ccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCCCcc
Confidence 499999999999999 566899999999999999999997665 588999999999999999999999999999889999
Q ss_pred ccccceEeccCccccc-cCCHHHHHHHHHHhcCCchHhHHHHHHHHHhccCCCCccccccCeEEcccceeeeeEEeCCCc
Q 001660 514 LPMEVCKIVEGQRYSK-RLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPW 592 (1036)
Q Consensus 514 lP~Elc~i~~gQ~~~~-~l~~~q~~~~ik~~~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~arvL~~P~ 592 (1036)
+|||||.|++|||+.+ +|++.|+++|++.++..|++|.+.|.++++...+..|++|++|||+|.++|+.|+||+||||.
T Consensus 354 ~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~ 433 (876)
T KOG1041|consen 354 YPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPPK 433 (876)
T ss_pred cchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEecccccccccccCCce
Confidence 9999999999999998 999999999999999999999999999999888888999999999999999999999999999
Q ss_pred eeecCCCCccccCCcCccccccCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCc
Q 001660 593 LKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARP 672 (1036)
Q Consensus 593 i~y~~~~~~~~~~p~~g~Wn~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~ 672 (1036)
|.|+++ .....|..|.|++++++|++|+.+..|+|++|....+.+. +.|+++|++.|+..||.|.. |. ......
T Consensus 434 L~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~~~~~ 507 (876)
T KOG1041|consen 434 LKFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KWAPTE 507 (876)
T ss_pred eeccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--ccCccc
Confidence 999985 3456788999999999999999999999999987655555 89999999999999999976 54 111111
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCccEEEEEecCCCCchhHHHHHHhhcccCceeeeeeecccccccHHHHHHHHHHHHhh
Q 001660 673 EHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVK 752 (1036)
Q Consensus 673 ~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~Ni~lKiN~K 752 (1036)
+.++..+ .......+...+++||+||+++++.++|+.||+++|..+||+||||+.+++.|..+||++||+||||+|
T Consensus 508 ~~~~~~~----~~~~~~~~~~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~K 583 (876)
T KOG1041|consen 508 ESLEDMI----TEKSSMEKAAAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVK 583 (876)
T ss_pred chhHHHH----HHHHhhhccCCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhhc
Confidence 2333322 222222211256999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccccccCCCCcCCCCeEEEEEEecCCCCCCCC--CCceeEEEEeeCCCCccceeEEEEEccCChhHhhhhhc
Q 001660 753 VGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDS--SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFK 830 (1036)
Q Consensus 753 lGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~~~--~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~ 830 (1036)
|||+|+.|.++.....| ..+.||||||+|||||++++.. .|||||||+|+|| +.++|.+.+++|.+++|+|+++
T Consensus 584 lGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~-- 659 (876)
T KOG1041|consen 584 LGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL-- 659 (876)
T ss_pred cCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcch--
Confidence 99999988776443344 4578999999999999998755 5999999999997 9999999999999999999884
Q ss_pred ccCCCCcCcchhhHHHHHHHHHHHHhCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeecc
Q 001660 831 TWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRH 910 (1036)
Q Consensus 831 ~~~~~~~~~~~~~~i~~~L~~f~~~~g~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh 910 (1036)
.+|+.++|..|++.++.+|+||||||||||||||.+|+++|+.+||+||..+.++|+|+||||||+|||
T Consensus 660 -----------~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrH 728 (876)
T KOG1041|consen 660 -----------GEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQKRH 728 (876)
T ss_pred -----------HHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCccCcCCCCcCceeeeccccCCCccceEeeccCCcccccCCceeEEEecCCCCCHHHHHHHHHHHhhc
Q 001660 911 HTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT 990 (1036)
Q Consensus 911 ~tRff~~~~~~~~~~~~~~N~~pGTvVD~~i~~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lT~~LC~~ 990 (1036)
|||||+.+..+ +..++..|++||||||+.||||.++|||||||.++||||||||||||+||++|++|+||+|||+|||+
T Consensus 729 htR~F~~~~~~-~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~~ 807 (876)
T KOG1041|consen 729 HTRLFAAELSK-DGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALCFT 807 (876)
T ss_pred ceeeecccCCC-CccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 99999998762 23467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccccccccccchh
Q 001660 991 YARCTRSVSIGKLSLLPAFSYSS 1013 (1036)
Q Consensus 991 y~r~t~sVsip~P~~yA~~~~~~ 1013 (1036)
|+|||+|||||+|+||||+.+.+
T Consensus 808 ~qr~t~pvSiP~P~YyA~~~A~R 830 (876)
T KOG1041|consen 808 HQRCTKPVSLPAPLYYAHEVAKR 830 (876)
T ss_pred eeeecCCCcCCchHHHHHHHHHH
Confidence 99999999999999999986544
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7e-129 Score=1076.86 Aligned_cols=725 Identities=26% Similarity=0.422 Sum_probs=631.5
Q ss_pred CCCCCCCcceEeeceEEEecC-CCceEEeeeeecCccccchhhHHHHHHHHHHHHhhccCCccccccCcceEEecCCCCC
Q 001660 206 GRGSTGTRCIVKANHFFAELP-DKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPF 284 (1036)
Q Consensus 206 ~~Gt~G~~i~l~tN~f~l~~~-~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~g~~~~~yDG~~~lys~~~Lp~ 284 (1036)
..|+.|.+|+|.||||++... ++.||||+|+|.|.+++++++++++. .+.+. +| ...+|||. .||..++|..
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~----~h~~l-ig-~~~~FDG~-iLfl~~k~eq 159 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLY----NHTDL-IG-KGYAFDGT-ILFLKEKFEQ 159 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHH----HhHhh-hc-cceeecce-eehhhHHHhh
Confidence 679999999999999999765 89999999999999999887777654 34332 44 34589997 6999988853
Q ss_pred CcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHhcCCCCCChHHHHHHHHHHHccC-CCCCccccCcccc
Q 001660 285 LSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLREL-PTTRYCPVGRSFY 363 (1036)
Q Consensus 285 ~~~~~~v~~~~~~~~~~~~~~~~~~~v~I~~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lnivlr~~-~~~~~~~~gr~ff 363 (1036)
+.. .+.. .++....++++|++++++.. .+.+.||++|+|+|.. ..++..++||+||
T Consensus 160 ~~t----el~~------ks~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRnyy 216 (845)
T KOG1042|consen 160 KQT----ELVS------KSRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRNYY 216 (845)
T ss_pred hhh----eeec------ccCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhccC
Confidence 221 1111 24677889999999987643 3567999999999984 5688999999999
Q ss_pred CCCCCCcccC-CCCeEEEeeeeeeeecccCeeEEeeecceeeEecCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccc
Q 001660 364 SPDLGRRQPL-GEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (1036)
Q Consensus 364 ~~~~~~~~~l-~~g~e~~~G~~~Svr~~~~~l~LniD~~~~~F~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkG 442 (1036)
++.. ..++ ..-+++|+||.+|||..+..++|+.|++|+ +.+..+|+|+|..+... ++...+++++++.|
T Consensus 217 np~~--~i~ip~~km~lwPGy~tSIrq~E~~illctei~hK-vmR~ETvy~~m~~~~~~-------~~~~qe~~~~~~~g 286 (845)
T KOG1042|consen 217 DPRA--KIEIPEFKMSLWPGYETSIRQHENDILLCTEISHK-VMRTETVYDIMRSCQHN-------TQRFQETVNKNVIG 286 (845)
T ss_pred CCCc--ccccccccceecCcchhHHHHhhhceeeehhhhhh-HhhhhHHHHHHHHHhhC-------HHHHHHHHHHHhcc
Confidence 9863 3444 468999999999999999999999999997 68889999999998653 34567889999999
Q ss_pred eEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHHHHHcCCccCCCCCceEEecCCCC--------Cccc
Q 001660 443 VRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQR--------PNYL 514 (1036)
Q Consensus 443 l~V~~~~~~~~~r~~~I~gi~~~~~~~~~F~~~~~g~~iSv~~Yf~~~Y~i~l~~p~lP~v~~g~~~~--------~~yl 514 (1036)
+.|.|.|+ ||+|+|++|+|..++.++|..++ | +||+.|||+++|||+|++-+||+|+...++| .++|
T Consensus 287 livLT~YN---NktyriddvD~~~tP~stF~k~d-g-eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~l 361 (845)
T KOG1042|consen 287 LIVLTRYN---NKTYRIDDVDFSQTPLSTFKKDD-G-EISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAML 361 (845)
T ss_pred eEEEEecC---CceeeeeccccCcCccceeeecC-c-eeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceee
Confidence 99999998 89999999999999999998654 4 8999999999999999999999999865432 4699
Q ss_pred cccceEeccCccccccCCHHHHHHHHHHhcCCchHhHHHHHHHHHhccCCC--CccccccCeEEcccceeeeeEEeCCCc
Q 001660 515 PMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHE--DPYAREFGIKISEKLASVEARILPAPW 592 (1036)
Q Consensus 515 P~Elc~i~~gQ~~~~~l~~~q~~~~ik~~~~~P~~R~~~i~~~~~~~~~~~--~~~l~~fGi~i~~~~~~v~arvL~~P~ 592 (1036)
.||||+++ |-...++-+.+.|++|.+++...|.+|...+..++..+.-+. -+.|+.|||+++.+.++|+||+|++.+
T Consensus 362 IPELc~~T-GLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEk 440 (845)
T KOG1042|consen 362 IPELCFLT-GLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEK 440 (845)
T ss_pred ehhhhhcc-CCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhccceecCccc
Confidence 99999999 677777778889999999999999999999998887664332 356899999999999999999999999
Q ss_pred eeecCCCCccccCCcCcccc--ccCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCccCCCCC
Q 001660 593 LKYHDTGKEKDCLPQVGQWN--MMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISA 670 (1036)
Q Consensus 593 i~y~~~~~~~~~~p~~g~Wn--~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~ 670 (1036)
|.+++. + ....+....|. ++.-++++...+++|++++..+. ..++++|++.|.+.+..+||++.+|-++.+.+.
T Consensus 441 I~~~~~-~-~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~--~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~dd 516 (845)
T KOG1042|consen 441 ILFGNQ-K-VPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRN--NSEAQEFINMLRRVASSMGMQIREPICVEIKDD 516 (845)
T ss_pred eecCCc-c-cCCCcchhhhhhhcccccccccCCCcceEEEecCcc--HHHHHHHHHHHHHhccccceecCCceEEEeCCC
Confidence 999873 1 22334557897 57778899999999999965543 568899999999999999999988666777777
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCccEEEEEecCCCCchhHHHHHHhhcccCceeeeeeeccccccc--HHHHHHHHHH
Q 001660 671 RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMS--KQYMANVALK 748 (1036)
Q Consensus 671 ~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~--~q~~~Ni~lK 748 (1036)
+++++-+++++.. +.++|+|+||+|+.+++.|+.||++++++..||||||..+|+.+.. ..+..+|+||
T Consensus 517 r~~tYvraiqq~v---------~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQ 587 (845)
T KOG1042|consen 517 RPGTYVRAIQQVV---------GADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQ 587 (845)
T ss_pred ChHHHHHHHHHhc---------cCCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHHHH
Confidence 7888888776654 3679999999999999999999999999999999999999997543 4678899999
Q ss_pred HHhhcCccccccccccccCCCCcCCCCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCccceeEEEEEccCChhHhhhh
Q 001660 749 INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL 828 (1036)
Q Consensus 749 iN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l 828 (1036)
|||||||..|.++ ||+ +.+||||+||+|.+. ....|++|+||||| ..+++|++.+..|...+|+.+.|
T Consensus 588 mnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~--~k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L 655 (845)
T KOG1042|consen 588 MNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPT--LKGRSVGAFVASMN-NDFTRWFSRVIEQENGQELADNL 655 (845)
T ss_pred HhhhhcCcceEEe------eec---ccceEEEEEeecCcc--ccCceEEEEEEeec-cchhhhhhheecccCHHHHHHHH
Confidence 9999999999875 565 679999999999865 34679999999999 99999999999999999999988
Q ss_pred hcccCCCCcCcchhhHHHHHHHHHHHHhCCCCceEEEEecCCCchhHHHHHHHHHH----HHHHHHHhcCCCCCCCEEEE
Q 001660 829 FKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELD----AIRKACASLEPNYQPPVTFV 904 (1036)
Q Consensus 829 ~~~~~~~~~~~~~~~~i~~~L~~f~~~~g~~P~~IIiyRDGVsegq~~~v~~~E~~----~ik~a~~~~~~~y~P~it~I 904 (1036)
+-+|..+|++|++.|..+|+|||||||||++||+.++.++|++ ++.+.++++..+|+|+++||
T Consensus 656 -------------~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~i 722 (845)
T KOG1042|consen 656 -------------KVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVI 722 (845)
T ss_pred -------------HHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 6899999999999999999999999999999999999999999 77777788887899999999
Q ss_pred EEeecccccccccCCCCCCccCcCCCCcCceeeeccccCCCccceEeeccCCcccccCCceeEEEecCCCCCHHHHHHHH
Q 001660 905 VVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLT 984 (1036)
Q Consensus 905 vv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~i~~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lT 984 (1036)
||+||.++|||..... ...||+||||||++||.|.++||||+||++.|||..||||.||||++++++|.+|+||
T Consensus 723 VV~KrvntR~f~~~~~------~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQrLt 796 (845)
T KOG1042|consen 723 VVTKRVNTRFFLQGSS------NAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQRLT 796 (845)
T ss_pred EEEeeccHHHHhhCCc------cccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHHHH
Confidence 9999999999998653 4789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCcccccccccccccccchhhhhHhhhccchhhhhhchhc
Q 001660 985 NNLCYTYARCTRSVSIGKLSLLPAFSYSSACTQMQMHNLAFSFSQLFLC 1033 (1036)
Q Consensus 985 ~~LC~~y~r~t~sVsip~P~~yA~~~~~~~~~~~~~~~la~~~~~~~~~ 1033 (1036)
|+|||+|+||.++|++||||. ||||||||+||.+|-
T Consensus 797 fKlCHlYyNW~GtiRVPApCq-------------YAHKLAfLv~qslH~ 832 (845)
T KOG1042|consen 797 FKLCHLYYNWPGTIRVPAPCQ-------------YAHKLAFLVAQSLHR 832 (845)
T ss_pred HHHhheeecCCcceeccchhH-------------HHHHHHHHHHhhhhh
Confidence 999999999999999999965 599999999999873
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=7.3e-98 Score=868.36 Aligned_cols=416 Identities=51% Similarity=0.877 Sum_probs=365.8
Q ss_pred ccccccCeEEcccceeeeeEEeCCCceeecCCCCccccCCcCccccccCceeeeCceeceeEEEEecCCcch----HHHH
Q 001660 567 PYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQD----SIAR 642 (1036)
Q Consensus 567 ~~l~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~g~Wn~~~~~f~~~~~l~~W~vv~~~~~~~~----~~~~ 642 (1036)
++|++|||+|+++|++|+||+|++|.|.|+++. ....+.+|.||+++++|++++.+++|+||++.+..+. +.++
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~--~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~ 78 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSS--KTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLR 78 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCc--cccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHH
Confidence 368999999999999999999999999999633 2345779999999999999999999999988653222 4789
Q ss_pred HHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccEEEEEecCCCCchhHHHHHHhhccc
Q 001660 643 GFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDL 722 (1036)
Q Consensus 643 ~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~e~~~ 722 (1036)
.|++.|.+.|+.+||++. .... ...+ .++.+++.+.++. ...++|||||+|+++.++|+.||++||+++
T Consensus 79 ~F~~~l~~~~~~~g~~~~--~~~~---~~~~----~~~~~~~~~~~~~--~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~ 147 (426)
T cd04657 79 NFVDQLVKTVIGAGINIT--TAIA---SVEG----RVEELFAKLKQAK--GEGPQLVLVILPKKDSDIYGRIKRLADTEL 147 (426)
T ss_pred HHHHHHHHHHHhcCCccc--cccc---ccch----hHHHHHHHHHhhc--cCCCCEEEEEEcCCCcchHHHHHHHHhhcC
Confidence 999999999999999986 1111 1112 2333333333322 136999999999988889999999999999
Q ss_pred Cceeeeeeeccccc-ccHHHHHHHHHHHHhhcCccccccccccccCCCCcCCCCeEEEEEEecCCCCCC-CCCCceeEEE
Q 001660 723 GLVSQCCLTKHVFK-MSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGE-DSSPSIAAVV 800 (1036)
Q Consensus 723 gI~TQci~~~t~~K-~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~-~~~pSiaavV 800 (1036)
||+||||..+|+.| .++||+.||+||||+||||+||.|+++. .+++...+|||||+||+||++++ ...|||||||
T Consensus 148 gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~V 224 (426)
T cd04657 148 GIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVV 224 (426)
T ss_pred CcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEE
Confidence 99999999999986 7899999999999999999999997642 22344689999999999999875 4579999999
Q ss_pred EeeCCCCccceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHHHHHhCCCCceEEEEecCCCchhHHHHHH
Q 001660 801 ASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLL 880 (1036)
Q Consensus 801 aS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~g~~P~~IIiyRDGVsegq~~~v~~ 880 (1036)
||+| .++++|.+.+++|..++|+|++| ++||+++|+.|++.++.+|++|||||||||||||.+|++
T Consensus 225 as~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~ 290 (426)
T cd04657 225 ASVD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLN 290 (426)
T ss_pred EecC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHH
Confidence 9999 99999999999999999999988 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEEeecccccccccCCCCCCccCcCCCCcCceeeeccccCCCccceEeeccCCcccc
Q 001660 881 YELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGT 960 (1036)
Q Consensus 881 ~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~i~~p~~~dFyL~Sh~~~qGT 960 (1036)
+|+++|++||.++.++|+|+||||||+||||+|||+.+..+.+ .+.+||+||||||++||+|..+||||+||.++|||
T Consensus 291 ~E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~--~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGT 368 (426)
T cd04657 291 EELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDAD--GKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGT 368 (426)
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCccccc--ccCCCCCCCeEEecccCCCCceeEEEeccccCccC
Confidence 9999999999999888999999999999999999998764321 13789999999999999999999999999999999
Q ss_pred cCCceeEEEecCCCCCHHHHHHHHHHHhhcccccCcccccccccccccccchhh
Q 001660 961 SRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIGKLSLLPAFSYSSA 1014 (1036)
Q Consensus 961 arPthY~Vl~de~~~~~d~lq~lT~~LC~~y~r~t~sVsip~P~~yA~~~~~~~ 1014 (1036)
||||||+||+||+++++|+||+|||+|||+|+|||++||||+|+||||+++.++
T Consensus 369 arPt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~ 422 (426)
T cd04657 369 ARPTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARA 422 (426)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988765543
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.6e-93 Score=840.48 Aligned_cols=440 Identities=30% Similarity=0.475 Sum_probs=391.1
Q ss_pred HHHHHHHHhcCCchHhHHHHHHHHHhccCCCC--ccccccCeEEcccceeeeeEEeCCCceeecCCCCccccCCcCcccc
Q 001660 535 QITALLKVTCQRPHERERDIMQTVHHNAYHED--PYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWN 612 (1036)
Q Consensus 535 q~~~~ik~~~~~P~~R~~~i~~~~~~~~~~~~--~~l~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~g~Wn 612 (1036)
.|++|+++++.+|.+|++.|.++++.+.++.+ ++|++|||+|+++|++|+||+|+||.|.|+++. ...+..++|+
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w~ 78 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADWK 78 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCcc
Confidence 47899999999999999999999998877665 589999999999999999999999999999742 1234577887
Q ss_pred c--cCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHHhc
Q 001660 613 M--MNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKL 690 (1036)
Q Consensus 613 ~--~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~ 690 (1036)
+ .+.+|+.+..+++|++|++. .+.+.++.|++.|.+.|+.+||.+..|.++.+...+.+++.+.|++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~W~vi~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------ 150 (448)
T cd04658 79 REIRNQPLYDAVNLNNWVLIYPS--RDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------ 150 (448)
T ss_pred hhhcCCcccCCcccCeEEEEEec--CCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc------
Confidence 5 46678999999999999875 3567899999999999999999998755555544445556555544332
Q ss_pred CCCCCccEEEEEecCCCCchhHHHHHHhhcccCceeeeeeecccccc--cHHHHHHHHHHHHhhcCccccccccccccCC
Q 001660 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAISRRI 768 (1036)
Q Consensus 691 ~~~~~~~lvlvilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~--~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~ 768 (1036)
.+++|+|||+|+++.++|..||++|+.+.||+||||..+|+.+. ..+++.||+||||+||||+||.|...
T Consensus 151 ---~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~----- 222 (448)
T cd04658 151 ---SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP----- 222 (448)
T ss_pred ---CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC-----
Confidence 46999999999988889999999999999999999999999764 56899999999999999999998653
Q ss_pred CCcCCCCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCccceeEEEEEccCChhH-hhhhhcccCCCCcCcchhhHHHH
Q 001660 769 PLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQEL-IQDLFKTWQDPVRGAVSGGMIKE 847 (1036)
Q Consensus 769 p~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~-i~~l~~~~~~~~~~~~~~~~i~~ 847 (1036)
+ ....+|||||+||+|+++. ..|||+|+|||+| .++++|++.++.|..++|+ +++| ++||++
T Consensus 223 ~-~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~ 285 (448)
T cd04658 223 P-FILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKK 285 (448)
T ss_pred C-CCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHH
Confidence 1 2357999999999999863 4699999999999 9999999999999999998 8777 799999
Q ss_pred HHHHHHHHhCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeecccccccccCCCCCCccCc
Q 001660 848 LLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDR 927 (1036)
Q Consensus 848 ~L~~f~~~~g~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~~~~~~~~~~~ 927 (1036)
+|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.++..+|+|+||||+|+||||+|||+.+.. .
T Consensus 286 ~l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~------~ 359 (448)
T cd04658 286 ALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN------N 359 (448)
T ss_pred HHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC------C
Confidence 9999999999999999999999999999999999999999999998888999999999999999999997652 4
Q ss_pred CCCCcCceeeeccccCCCccceEeeccCCcccccCCceeEEEecCCCCCHHHHHHHHHHHhhcccccCcccccccccccc
Q 001660 928 SGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIGKLSLLP 1007 (1036)
Q Consensus 928 ~~N~~pGTvVD~~i~~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lT~~LC~~y~r~t~sVsip~P~~yA 1007 (1036)
.+||+||||||++||||..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++||||+|+||
T Consensus 360 ~~N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~y- 438 (448)
T cd04658 360 FSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQY- 438 (448)
T ss_pred CCCCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHH-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cccchhhhhHhhhccchhhhhh
Q 001660 1008 AFSYSSACTQMQMHNLAFSFSQ 1029 (1036)
Q Consensus 1008 ~~~~~~~~~~~~~~~la~~~~~ 1029 (1036)
||+||+++|+
T Consensus 439 ------------A~~~a~~~g~ 448 (448)
T cd04658 439 ------------AHKLAFLVGQ 448 (448)
T ss_pred ------------HHHHHHHhcC
Confidence 6677777764
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=9.2e-85 Score=752.33 Aligned_cols=380 Identities=30% Similarity=0.461 Sum_probs=330.6
Q ss_pred ceeeeeEEeCCCceeecCCCCccccCCcCccccccCceeeeCcee-ceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcc
Q 001660 580 LASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTV-NHWICINFSRHVQDSIARGFCFELAQMCYISGMA 658 (1036)
Q Consensus 580 ~~~v~arvL~~P~i~y~~~~~~~~~~p~~g~Wn~~~~~f~~~~~l-~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~ 658 (1036)
+++|+||+||+|.|.|+++ |++++++|+.++.+ ++|+|+++.+ +..++|++.|.+.|+.+||.
T Consensus 2 ~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~~ 65 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGMK 65 (393)
T ss_pred ceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCCc
Confidence 6899999999999999751 99999999999999 9999998753 33568999999999999999
Q ss_pred cCC-CCccCCCCC--CchhHHHHHHHHHHHHHHhcCCCCCccEEEEEecCCCCchhHHHHHHhhcccCceeeeeeecccc
Q 001660 659 FNP-EPVIPPISA--RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVF 735 (1036)
Q Consensus 659 i~~-~p~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~ 735 (1036)
+.+ ++...+... +.+++++.| +++.+ .+++|||||+|+++.++|+.||++|+.+ ||+||||+.+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~ 135 (393)
T cd02826 66 IKEIPIVSWIEDLNNSFKDLKSVF----KNAIK-----AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAK 135 (393)
T ss_pred cCCCCCcceeecccccHHHHHHHH----HHHhh-----cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhc
Confidence 976 333222211 223343333 33322 4799999999998889999999999988 9999999999997
Q ss_pred c--ccHHHHHHHHHHHHhhcCccccccccccccCCCCcCCCCeEEEEEEecCCCCC-CCCCCceeEEEEeeCCCCcccee
Q 001660 736 K--MSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPG-EDSSPSIAAVVASQDWPEVTKYA 812 (1036)
Q Consensus 736 K--~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~-~~~~pSiaavVaS~d~~~~~ky~ 812 (1036)
+ ..++++.||+||||+||||+||.|+.+ .+...+|||||+||+|++++ ....||++|+|+|+| .+ +.+.
T Consensus 136 ~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~g 207 (393)
T cd02826 136 KMRRLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFLG 207 (393)
T ss_pred cccccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-cccc
Confidence 6 678999999999999999999999753 12357899999999999875 345799999999999 65 3444
Q ss_pred EEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHHHHHhCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHH
Q 001660 813 GLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACA 891 (1036)
Q Consensus 813 ~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~g~-~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~ 891 (1036)
+.++.|..++|++++| ++||+++|+.|+++++. +|++|||||||||||||++|+++|+++|++||.
T Consensus 208 ~~~~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~ 274 (393)
T cd02826 208 GFLYVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE 274 (393)
T ss_pred eEEEEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5578888889998887 78999999999999999 999999999999999999999999999999999
Q ss_pred hcCCCCCCCEEEEEEeecccccccccCCCCCCccCcCCCCcCceeeeccccCCCccceEeeccCCcccccCCceeEEEec
Q 001660 892 SLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWD 971 (1036)
Q Consensus 892 ~~~~~y~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~i~~p~~~dFyL~Sh~~~qGTarPthY~Vl~d 971 (1036)
+..+|+|+||||+|+||||+|||+.+.++ ..+||+||||||++||||..+||||+||.++|||+|||||+||+|
T Consensus 275 -~~~~~~p~it~Ivv~Krh~~Rff~~~~~~-----~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d 348 (393)
T cd02826 275 -IEESYRPKLVIIVVQKRHNTRFFPNEKNG-----GVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFN 348 (393)
T ss_pred -hCCCCCCCEEEEEEeccccceeccCCCCC-----CCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEEC
Confidence 77789999999999999999999976642 348999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcccccCcccccccccccccccch
Q 001660 972 ENKFTADGLQSLTNNLCYTYARCTRSVSIGKLSLLPAFSYS 1012 (1036)
Q Consensus 972 e~~~~~d~lq~lT~~LC~~y~r~t~sVsip~P~~yA~~~~~ 1012 (1036)
|+++++|+||+|||+|||+|+|||++||||+|+||||+.+.
T Consensus 349 ~~~~~~d~lq~lty~lc~~y~~~~~~vslP~p~~yA~~~a~ 389 (393)
T cd02826 349 DKNWSLNELEILTYILCLTHQNVYSPISLPAPLYYAHKLAK 389 (393)
T ss_pred CCCCCHHHHHHHHHHHhhcccccCCCcccChHHHHHHHHHH
Confidence 99999999999999999999999999999999998776443
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=6.3e-70 Score=611.22 Aligned_cols=298 Identities=46% Similarity=0.729 Sum_probs=263.8
Q ss_pred EEEEEecCCCCchhHHHHHHhhcccCceeeeeeecccccc--cHHHHHHHHHHHHhhcCccccccccccccCCCCcCCCC
Q 001660 698 LLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRP 775 (1036)
Q Consensus 698 lvlvilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~--~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~ 775 (1036)
+||||+|+++.+.|..||++|+.++||+||||..+++.+. ..+++.||+||||+||||+|+.+.+. ...+++ .+
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~-~~~~~~---~~ 76 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDS-PPSIDL---KN 76 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSC-SSGSSE---SE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccc-cccccc---Cc
Confidence 5889999988899999999999999999999999999877 46999999999999999996443321 111111 68
Q ss_pred eEEEEEEecCCCCCCCCCCceeEEEEeeCCCCccceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHHHHH
Q 001660 776 TIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 855 (1036)
Q Consensus 776 tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~ 855 (1036)
|||||+||+|+++.....||++|+|+|+| ++.++|.+.+..|..++|++++| ++|++++|+.|+++
T Consensus 77 ~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~~ 142 (302)
T PF02171_consen 77 TMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKKN 142 (302)
T ss_dssp EEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHHH
Confidence 99999999999876656799999999999 99999999999999999999987 68999999999999
Q ss_pred hCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeecccccccccCCCCCCccCcCCCCcCc
Q 001660 856 TGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPG 934 (1036)
Q Consensus 856 ~g~-~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pG 934 (1036)
++. +|++|||||||||||||.+|+++|+++|++||.++..+|.|+||||+|+||||+|||+.+..+ ...||+||
T Consensus 143 ~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~-----~~~N~~~G 217 (302)
T PF02171_consen 143 NGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRD-----GLQNPPPG 217 (302)
T ss_dssp TTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEE-----TTTEECTT
T ss_pred cCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeeccccc-----ccCCCCCC
Confidence 998 999999999999999999999999999999999999899999999999999999999987742 47899999
Q ss_pred eeeeccccCCCccceEeeccCCcccccCCceeEEEecCCCCCHHHHHHHHHHHhhcccccCcccccccccccccccchhh
Q 001660 935 TVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIGKLSLLPAFSYSSA 1014 (1036)
Q Consensus 935 TvVD~~i~~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lT~~LC~~y~r~t~sVsip~P~~yA~~~~~~~ 1014 (1036)
||||+.||+|..+||||+||.++|||+|||||+|||||..+++|+||+|||+|||+|+||+++||+|+|+||
T Consensus 218 tvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~y-------- 289 (302)
T PF02171_consen 218 TVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYY-------- 289 (302)
T ss_dssp EEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHH--------
T ss_pred eeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhHhhhccchhhhhhch
Q 001660 1015 CTQMQMHNLAFSFSQLF 1031 (1036)
Q Consensus 1015 ~~~~~~~~la~~~~~~~ 1031 (1036)
||+||..+++.+
T Consensus 290 -----A~~~a~~~~~~~ 301 (302)
T PF02171_consen 290 -----AHKLAKRGRNNL 301 (302)
T ss_dssp -----HHHHHHHHHHHC
T ss_pred -----HHHHHHHHHhhc
Confidence 555666666554
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=3.3e-45 Score=425.68 Aligned_cols=268 Identities=23% Similarity=0.241 Sum_probs=217.1
Q ss_pred CCccEEEEEecCCC------CchhHHHHHHhhcccCceeeeeeecccccc--cHHHHHHHHHHHHhhcCccccccccccc
Q 001660 694 KELDLLIVILPDNN------GSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAIS 765 (1036)
Q Consensus 694 ~~~~lvlvilp~~~------~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~--~~q~~~Ni~lKiN~KlGG~N~~l~~~~~ 765 (1036)
..++++||++|++. .++|..||++| .+.||+||||..+|+.+. ..+++.||++|||+|+||+||.|...
T Consensus 109 ~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aKlGG~pW~l~~~-- 185 (404)
T cd04659 109 QGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAKLGGIPWKLDAD-- 185 (404)
T ss_pred CCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHhcCCCceEcccC--
Confidence 46899999999975 68999999987 689999999999999754 57899999999999999999998642
Q ss_pred cCCCCcCCCCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCccceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHH
Q 001660 766 RRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMI 845 (1036)
Q Consensus 766 ~~~p~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i 845 (1036)
...+|||||+||+|+..+....+++| ...| .+.. +.+..+...++.+++- ....+.+++
T Consensus 186 ------~~~~~~iIGidv~~~~~~~~~~~~~a---~vf~-~~g~---g~~~~~~~~~~~~~~~--------~~~~~~~~l 244 (404)
T cd04659 186 ------SDPADLYIGIGFARSRDGEVRVTGCA---QVFD-SDGL---GLILRGAPIEEPTEDR--------SPADLKDLL 244 (404)
T ss_pred ------CCCCeEEEEEEEEEcCCCCEEEEEEE---EEEc-CCCC---EEEEecCccCCccccc--------CHHHHHHHH
Confidence 24689999999999975422223443 3334 3321 1222233333333210 011247899
Q ss_pred HHHHHHHHHHhCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeecccccccccCCCCCCc
Q 001660 846 KELLISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNA 924 (1036)
Q Consensus 846 ~~~L~~f~~~~g~-~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~~~~~~~~ 924 (1036)
+++|+.|++.++. +|+||||||||+. .++|+++|++||.++. |+|+||+|+|+||+|||..+..+
T Consensus 245 ~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~f~~~~~~--- 310 (404)
T cd04659 245 KRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRLFRFGTYP--- 310 (404)
T ss_pred HHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcceEEecCCC---
Confidence 9999999999988 9999999999994 6899999999999874 89999999999999999975532
Q ss_pred cCcCCCCcCceeeeccccCCCccceEeeccCCc--------ccccCCceeEEEecCCCCCHHHHHHHHHHHhhcccccCc
Q 001660 925 VDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI--------QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTR 996 (1036)
Q Consensus 925 ~~~~~N~~pGTvVD~~i~~p~~~dFyL~Sh~~~--------qGTarPthY~Vl~de~~~~~d~lq~lT~~LC~~y~r~t~ 996 (1036)
...||++|||||.. .+||||++|... +||++|+| |++|+.+.+.|+|+++||.||++|+|++.
T Consensus 311 --~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~n~~~ 381 (404)
T cd04659 311 --NGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKLNWNSFQ 381 (404)
T ss_pred --CCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhcCcCCCC
Confidence 12799999999954 599999999886 99999999 88999999999999999999999999988
Q ss_pred -cccccccccccc
Q 001660 997 -SVSIGKLSLLPA 1008 (1036)
Q Consensus 997 -sVsip~P~~yA~ 1008 (1036)
++++|+|+||||
T Consensus 382 ~~~~lP~ti~YA~ 394 (404)
T cd04659 382 FYSRLPVTIHYAD 394 (404)
T ss_pred CCCCcceEEeHHH
Confidence 999999999743
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.88 E-value=1.1e-22 Score=200.23 Aligned_cols=133 Identities=34% Similarity=0.609 Sum_probs=109.3
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHHH
Q 001660 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (1036)
Q Consensus 409 ~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~~~~~~F~~~~~g~~iSv~~Yf~ 488 (1036)
++|+|++.++.+.... .......+++++|+|++|.++|++. .+.|+|.+|+++.+++.+|+.+ +|+.+||+|||+
T Consensus 1 ~~vld~~~~~~~~~~~---~~~~~~~~~~~~lkg~~V~~~~~~~-~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~ 75 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQR---NNIKFQKKLERALKGLKVTTTYNNN-KRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFK 75 (135)
T ss_dssp HHHHHHHHHHCTCSSH---HHHHHHHHHHHHHTTEEEEETTTTC-CEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHH
T ss_pred CcHHHHHHHHHhhhcc---cchHHHHHHHHHcCCcEEEEecCCC-ceEEEEeEEECCCCcceeeecC-CCceEEhHHHHH
Confidence 4799999998764321 1122444599999999999999843 3999999999999999999865 488999999999
Q ss_pred HHcCCccCCCCCceEEecCCCC--CccccccceEeccCccccccCCHHHHHHHHHHhcCC
Q 001660 489 ETYGFVIQHTQWPCLQVGNQQR--PNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (1036)
Q Consensus 489 ~~Y~i~l~~p~lP~v~~g~~~~--~~ylP~Elc~i~~gQ~~~~~l~~~q~~~~ik~~~~~ 546 (1036)
++||++|+||+||||+++...+ .+|||||||.|+++|++..++...+.+.|++.+|.+
T Consensus 76 ~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 76 EKYNIRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HTCT---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hhhhcccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999998777 999999999999999999999999999999999863
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.84 E-value=1.9e-20 Score=178.80 Aligned_cols=113 Identities=49% Similarity=0.879 Sum_probs=98.8
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHHH
Q 001660 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (1036)
Q Consensus 409 ~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~~~~~~F~~~~~g~~iSv~~Yf~ 488 (1036)
++|+|+++++++.... ..+++.++.+++++|+|++|.++|++..+|.|+|.+|++.++.+.+|+.++.++++||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~ 80 (114)
T cd02846 2 QPVIEFLKEFLGFDTP-LGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFK 80 (114)
T ss_pred ccHHHHHHHHhCcccc-cccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHH
Confidence 6899999999875432 245677888999999999999999865578999999999998899998654335899999999
Q ss_pred HHcCCccCCCCCceEEecCCCCCccccccceEec
Q 001660 489 ETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIV 522 (1036)
Q Consensus 489 ~~Y~i~l~~p~lP~v~~g~~~~~~ylP~Elc~i~ 522 (1036)
++||++|+||+||||++|+..+++|+|||||.|+
T Consensus 81 ~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 81 EKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 9999999999999999998888999999999985
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.82 E-value=3.5e-20 Score=176.53 Aligned_cols=112 Identities=29% Similarity=0.430 Sum_probs=98.1
Q ss_pred CccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHH
Q 001660 408 PLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYF 487 (1036)
Q Consensus 408 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~~~~~~F~~~~~g~~iSv~~Yf 487 (1036)
++||+|+++++++.....+.+.+.++.++.++|+|++|.++|++ .++.|+|.+|++.++++. |+. .+|+++||+|||
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~-~~r~y~i~~i~~~~a~~~-f~~-~~~~~isv~dYf 77 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNP-LNRVYRPDGETRLKAPSQ-LKH-SDGKEITFADYF 77 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCC-CceEEEEeeEECCCChhh-eec-CCCCEEEHHHHH
Confidence 36899999999876554566777888999999999999999984 468999999999999887 763 347799999999
Q ss_pred HHHcCCccCCCCCceEEecCC---CCCccccccceEec
Q 001660 488 YETYGFVIQHTQWPCLQVGNQ---QRPNYLPMEVCKIV 522 (1036)
Q Consensus 488 ~~~Y~i~l~~p~lP~v~~g~~---~~~~ylP~Elc~i~ 522 (1036)
+++||++|+||+||||+++.. .+.+|||||||.|+
T Consensus 78 ~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 78 KERYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred HHHcCCcccCCCCCEEEecCcccCCCceEEchheEEeC
Confidence 999999999999999999987 67899999999984
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.75 E-value=3e-18 Score=162.56 Aligned_cols=105 Identities=27% Similarity=0.394 Sum_probs=90.3
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHHH
Q 001660 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (1036)
Q Consensus 409 ~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~~~~~~F~~~~~g~~iSv~~Yf~ 488 (1036)
.+++|++.+++.... ...++++++++|+|++|.++|+ ++.|+|.+|+++.+++++|+.. ++..+||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~V~t~yn---~k~Y~I~~I~~~~~p~s~F~~~-~~~~~S~~~Yy~ 72 (117)
T cd02845 2 TTVLDRMHKLYRQET-----DERFREECEKELIGSIVLTRYN---NKTYRIDDIDFDKTPLSTFKKS-DGTEITFVEYYK 72 (117)
T ss_pred eeHHHHHHHHHHhcc-----cHHHHHHHHHHcCCCEEEEeeC---CeEEEEeEecCCCCccccCcCC-CCCeeeHHHHHH
Confidence 478999999876421 1246788999999999999996 7999999999999999999743 346899999999
Q ss_pred HHcCCccCCCCCceEEecCCC--------CCccccccceEec
Q 001660 489 ETYGFVIQHTQWPCLQVGNQQ--------RPNYLPMEVCKIV 522 (1036)
Q Consensus 489 ~~Y~i~l~~p~lP~v~~g~~~--------~~~ylP~Elc~i~ 522 (1036)
++||+.|+||+||||+++.++ +.+|||||||.|+
T Consensus 73 ~kY~i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~lt 114 (117)
T cd02845 73 KQYNIEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLT 114 (117)
T ss_pred HHcCCccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhc
Confidence 999999999999999998643 4799999999998
No 13
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.47 E-value=4.5e-14 Score=136.87 Aligned_cols=84 Identities=31% Similarity=0.532 Sum_probs=71.4
Q ss_pred HHHHccceEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHHHHHcCCccCCCCCceEEecC--------
Q 001660 436 IKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGN-------- 507 (1036)
Q Consensus 436 l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~~~~~~F~~~~~g~~iSv~~Yf~~~Y~i~l~~p~lP~v~~g~-------- 507 (1036)
.++.|+|++|.++|+ ++.|+|.+|+ +.+++++|+.+++++.+||+|||+++|||+|+||+||||+++.
T Consensus 27 ~~~~l~g~~V~t~hn---~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL 102 (135)
T cd02844 27 CACDLKGSVVTAPHN---GRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLL 102 (135)
T ss_pred cHHHhcCCEEEEcCC---CcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceec
Confidence 467899999999997 7999999999 9999999986553367999999999999999999999999751
Q ss_pred ------------CCC---CccccccceEecc
Q 001660 508 ------------QQR---PNYLPMEVCKIVE 523 (1036)
Q Consensus 508 ------------~~~---~~ylP~Elc~i~~ 523 (1036)
+.+ .++||||||.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 103 HNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccccccccccccccceEEEeChHHhcccc
Confidence 011 3699999998863
No 14
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.41 E-value=9.4e-14 Score=111.17 Aligned_cols=51 Identities=63% Similarity=1.105 Sum_probs=41.6
Q ss_pred ccCccccCCCCCCcccCCCCeEEEeeeeeeeecccCeeEEeeecceeeEecC
Q 001660 357 PVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEP 408 (1036)
Q Consensus 357 ~~gr~ff~~~~~~~~~l~~g~e~~~G~~~Svr~~~~~l~LniD~~~~~F~~~ 408 (1036)
.+||+||+++... .+|++|+|+|+|||+||||++++|+||||+++++||++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 5799999876433 78999999999999999999999999999999999975
No 15
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=99.12 E-value=2.2e-10 Score=100.77 Aligned_cols=68 Identities=54% Similarity=0.766 Sum_probs=54.8
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchh--hhhhhcccccCccCCCCcccCCCC
Q 001660 126 GGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSE--VSQQFQQLSLPEEVSSSQVIQPAP 193 (1036)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ss~~~~~~~~ 193 (1036)
.++++.++.|++|||+.++++++.+++++++.+++++.++++++ +++++++|++...+++.+.+.+.|
T Consensus 34 ~G~p~r~~~PELHQAt~~~yQa~v~~qp~pSea~sss~p~e~s~~qv~QQfqqLsi~~e~s~sQaiQp~P 103 (104)
T PF12764_consen 34 GGGPPRPSVPELHQATQVQYQAPVSSQPSPSEASSSSQPPEPSTVQVTQQFQQLSIQQESSPSQAIQPAP 103 (104)
T ss_pred CCCCcCCCcchhhcccCCcccCcccCCCCcCcCCCccCCCCcchHHHHHHHHHHhhccCCCcccccCCCC
Confidence 34556667889999999999998888888888888888866655 489999999988777777776654
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4e-09 Score=119.70 Aligned_cols=294 Identities=17% Similarity=0.143 Sum_probs=176.4
Q ss_pred hHHHHHHHHHHHHHHHhcC-cccCC-CCccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccEEEEEecCCCCchhHHHH
Q 001660 638 DSIARGFCFELAQMCYISG-MAFNP-EPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLK 715 (1036)
Q Consensus 638 ~~~~~~f~~~L~~~~~~~G-m~i~~-~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~Y~~IK 715 (1036)
...+..|.+.|....+..+ +...- -+.+.....++.. ...|..+++++ ....++...+-++...|+.+|
T Consensus 355 ~~rlk~~~kkv~~~fkn~n~i~~k~eg~~l~~a~~r~~~-kddl~~iIkei--------d~ee~~k~e~ykdd~~YailK 425 (685)
T COG1431 355 LTRLKSTIKKVVYGFKNSNGIDWKVEGLTLHVAGKRPKM-KDDLTKIIKEI--------DVEELKKQEMYKDDVKYAILK 425 (685)
T ss_pred hhHHHHHHHHHHHHHHhccchhhhcccceeeecccchhh-hccchhhhhhh--------hhhhhccccccccchHHHHHH
Confidence 3457788889988888776 33211 1223222222221 12333444432 122333444556667899999
Q ss_pred HHhhcccCceeeeeeecccccccHHHHHHHHHHHHhhcCccccccccccccCCCCcCCCCeEEEEEEecCCCCCCCCCCc
Q 001660 716 RICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPS 795 (1036)
Q Consensus 716 ~~~e~~~gI~TQci~~~t~~K~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~~~~pS 795 (1036)
+ .+.-|+||.|+-.+..|.-+-++.|++.|+-+|-+|+++.+-+- ...-+-|+|+||+.-+-+ ...
T Consensus 426 r---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~--------~gpvDaivGlDvsr~~~g---n~t 491 (685)
T COG1431 426 R---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNG--------LGPVDAIVGLDVSRVSEG---NWT 491 (685)
T ss_pred h---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeecc--------CCCccceeeeeeeEEeeC---CeE
Confidence 8 55689999999999887778899999999999999999976542 123358999999987633 234
Q ss_pred eeEEEEeeCCC--CccceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHHHH--HhC-CCCceEEEEecCC
Q 001660 796 IAAVVASQDWP--EVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR--ATG-QKPQRIIFYRDGV 870 (1036)
Q Consensus 796 iaavVaS~d~~--~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~--~~g-~~P~~IIiyRDGV 870 (1036)
+-|++...| . ....|.-....- +++......+-+.. ..+ ..-.+|++.|||-
T Consensus 492 V~gct~~f~-seg~l~eyy~t~tpa----------------------~GErl~~~g~yle~~~~~gfe~~n~iV~lRDG~ 548 (685)
T COG1431 492 VEGCTSCFV-SEGGLEEYYHTVTPA----------------------LGERLETSGRYLEKMNWRGFESRNLIVTLRDGK 548 (685)
T ss_pred EeeeeEEEe-ccCceEEeeecccCC----------------------ccchhhhHHHHHHHHHhhhhhccCeeEEEecCc
Confidence 444332233 2 222222211110 11222111111111 123 2447799999995
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeecccccccccCCCCCCccCcCCCCcCceee------eccccCC
Q 001660 871 SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVV------DSKICHP 944 (1036)
Q Consensus 871 segq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvV------D~~i~~p 944 (1036)
+...|++++++.=..+. -.++++.+. +.+-+||..+.. .+ |-.+ ++.+++|
T Consensus 549 -------l~~~E~aavkeyg~elg----sn~ev~~i~-knNp~vf~~e~~-------i~----g~f~~~~~s~~h~~~~~ 605 (685)
T COG1431 549 -------LVAGEIAAVKEYGGELG----SNPEVNRIL-KNNPWVFAIEGE-------IW----GAFVRLDGSTVHLCCSP 605 (685)
T ss_pred -------cchHHHHHHHHHhhhcC----CChhhheec-ccCCeEEEecce-------ee----eEEEecCCcccccccCC
Confidence 45788888877765552 345555554 456669987652 11 2233 2334444
Q ss_pred CccceEeeccCCcccccCCceeEEEecCCCCCHHHHHHHHHHHhhcccccCcc--cccccccccccccc
Q 001660 945 TEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRS--VSIGKLSLLPAFSY 1011 (1036)
Q Consensus 945 ~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lT~~LC~~y~r~t~s--Vsip~P~~yA~~~~ 1011 (1036)
. .....||-+|..-- .-|-.+.-|-|- |.|+|+-+.+..... .+||||++|||...
T Consensus 606 y--------npv~~gT~~pi~~r--~~~g~l~~e~i~-lv~dLT~mNys~~~g~~~rlPApvhYaDk~~ 663 (685)
T COG1431 606 Y--------NPVRRGTPRPIALR--RRDGKLDGELIG-LVHDLTAMNYSNPSGTWSRLPAPVHYADKAS 663 (685)
T ss_pred C--------CceecCCCcccccc--cccCccchhhHH-HHHHhhhhccCCCCCceecCCcchhhhHHHH
Confidence 2 24566898887633 223334555555 999999999988888 99999999999743
No 17
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.61 E-value=4.4e-08 Score=91.61 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred HHccceEEEEeecCCc-cceEEEeccCCCCCCceeeeecCCCcEeeHHHHHHHHcCCccCCCCCceEEecC
Q 001660 438 KALRGVRVEVTHRGNM-RRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGN 507 (1036)
Q Consensus 438 ~~LkGl~V~~~~~~~~-~r~~~I~gi~~~~~~~~~F~~~~~g~~iSv~~Yf~~~Y~i~l~~p~lP~v~~g~ 507 (1036)
+.+.|..|.+.|++.+ .++|+|.+|.++.++.++|+.+ + .+|++|||+++|||.|++++||+|.++.
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~--~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP--E-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC--C-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 5688999999998422 3899999999999999999743 3 6999999999999999999999999974
No 18
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.11 E-value=0.18 Score=53.01 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=3.8
Q ss_pred EeeeeecC
Q 001660 232 QYDVTITP 239 (1036)
Q Consensus 232 ~YdV~i~p 239 (1036)
-|.|++.+
T Consensus 184 VYAVEfs~ 191 (317)
T KOG1596|consen 184 VYAVEFSH 191 (317)
T ss_pred EEEEEecc
Confidence 35555543
No 19
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.91 E-value=0.25 Score=51.97 Aligned_cols=7 Identities=57% Similarity=0.937 Sum_probs=3.4
Q ss_pred cCcceEE
Q 001660 271 DGRKSLY 277 (1036)
Q Consensus 271 DG~~~ly 277 (1036)
-|.|.||
T Consensus 156 pGsKVLY 162 (317)
T KOG1596|consen 156 PGSKVLY 162 (317)
T ss_pred CCceEEE
Confidence 3445555
No 20
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=93.44 E-value=0.14 Score=46.21 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCcCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCchhhhhh
Q 001660 124 HSGGPTRSSQIPELHQAT----PTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQ 173 (1036)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (1036)
+..-++.++++...++++ +.|..+++|+.++++++..+++.+...++.++
T Consensus 39 r~~~PELHQAt~~~yQa~v~~qp~pSea~sss~p~e~s~~qv~QQfqqLsi~~e 92 (104)
T PF12764_consen 39 RPSVPELHQATQVQYQAPVSSQPSPSEASSSSQPPEPSTVQVTQQFQQLSIQQE 92 (104)
T ss_pred CCCcchhhcccCCcccCcccCCCCcCcCCCccCCCCcchHHHHHHHHHHhhccC
Confidence 445578889998888882 33333455545555554444566666665443
No 21
>COG4371 Predicted membrane protein [Function unknown]
Probab=90.85 E-value=0.7 Score=48.47 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=5.5
Q ss_pred hhhhhhcccccC
Q 001660 169 EVSQQFQQLSLP 180 (1036)
Q Consensus 169 ~~~~~~~~l~~~ 180 (1036)
.+...+++++.+
T Consensus 159 elk~eL~~iA~~ 170 (334)
T COG4371 159 ELKSELQRIAQQ 170 (334)
T ss_pred HHHHHHHHHHHh
Confidence 344444555443
No 22
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=83.81 E-value=13 Score=44.93 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=8.6
Q ss_pred eEeeceEEEecC
Q 001660 215 IVKANHFFAELP 226 (1036)
Q Consensus 215 ~l~tN~f~l~~~ 226 (1036)
.|.+|-|+.++.
T Consensus 869 V~~~~n~Pf~v~ 880 (944)
T KOG4307|consen 869 VLSCNNFPFDVT 880 (944)
T ss_pred EEEecCCCcccc
Confidence 577888877665
No 23
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=82.96 E-value=4.1 Score=46.50 Aligned_cols=12 Identities=8% Similarity=0.351 Sum_probs=6.1
Q ss_pred cCCCceEEeeee
Q 001660 225 LPDKDLHQYDVT 236 (1036)
Q Consensus 225 ~~~~~iy~YdV~ 236 (1036)
+....+--|+|+
T Consensus 182 ~rG~kVAsF~i~ 193 (641)
T KOG3915|consen 182 LRGAKVASFTIE 193 (641)
T ss_pred ecCceeeEEEec
Confidence 444455555554
No 24
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=80.33 E-value=1.6 Score=43.02 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=43.2
Q ss_pred ccCCceeEEEecCCCCCHHHHHHHHHHHhhcccccCcccccccccccccc
Q 001660 960 TSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIGKLSLLPAF 1009 (1036)
Q Consensus 960 TarPthY~Vl~de~~~~~d~lq~lT~~LC~~y~r~t~sVsip~P~~yA~~ 1009 (1036)
....+=++|+.-...-.+++|..|||.||+.+.-+...+.+|-|+++|.+
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~ 115 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQ 115 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHH
Confidence 45556677887776788999999999999999999999999999998876
No 25
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=79.78 E-value=56 Score=38.92 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=11.7
Q ss_pred cCCHHHHHHHHHHhcCCchH
Q 001660 530 RLNERQITALLKVTCQRPHE 549 (1036)
Q Consensus 530 ~l~~~q~~~~ik~~~~~P~~ 549 (1036)
.|++++...++......|.+
T Consensus 587 dlteeev~kilde~vkd~s~ 606 (727)
T PF05642_consen 587 DLTEEEVKKILDELVKDPSD 606 (727)
T ss_pred ccCHHHHHHHHHHHhcCcch
Confidence 45666666666555555544
No 26
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=76.96 E-value=11 Score=43.38 Aligned_cols=11 Identities=27% Similarity=0.467 Sum_probs=4.9
Q ss_pred CccccccceEe
Q 001660 511 PNYLPMEVCKI 521 (1036)
Q Consensus 511 ~~ylP~Elc~i 521 (1036)
++.+|+.-..+
T Consensus 371 pvslppasv~m 381 (641)
T KOG3915|consen 371 PVSLPPASVEM 381 (641)
T ss_pred cccCCchhhHH
Confidence 44555443333
No 27
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=76.13 E-value=17 Score=36.84 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=17.8
Q ss_pred CCceEEeeeeecCcc-----ccchhhHHHHHHHH-HHHHhh
Q 001660 227 DKDLHQYDVTITPEV-----TSRGVNRAVMEQLV-KLYRES 261 (1036)
Q Consensus 227 ~~~iy~YdV~i~pe~-----~~k~~~r~i~~~l~-~~~~~~ 261 (1036)
|.+|-+|.|+-+..- .+-++..+|+++++ .+|++.
T Consensus 158 N~tv~~~~~~~t~kg~n~te~d~kim~rvv~~mc~tqyq~~ 198 (217)
T smart00157 158 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYQRE 198 (217)
T ss_pred hhheeeeEeccccCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777877643210 11224445555543 566654
No 28
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=71.92 E-value=21 Score=35.88 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=50.7
Q ss_pred CCCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCcc-ceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHH
Q 001660 773 DRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLIS 851 (1036)
Q Consensus 773 ~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~ 851 (1036)
..|.-|-++|+||-.. .-.|+++|.-.| .... +.+=.+.+... +-.+|. .+|.|.|..
T Consensus 9 ~~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------~~M~Evl~R 67 (155)
T PF08459_consen 9 KLPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKTV--DGGDDY--------------AAMREVLTR 67 (155)
T ss_dssp S--SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE----STT-HH--------------HHHHHHHHH
T ss_pred CCCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCCC--CCCcHH--------------HHHHHHHHH
Confidence 3578899999999753 235777776555 3221 22222333321 112455 466676655
Q ss_pred HHH----HhCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeec--cccc
Q 001660 852 FRR----ATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKR--HHTR 913 (1036)
Q Consensus 852 f~~----~~g~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Kr--h~tR 913 (1036)
+++ ....+|+-||| || +.||+ .+.+++++++. .. |.+|-..|+ |.|+
T Consensus 68 R~~~~~~~~~~lPDLilI--DG-G~gQl--------~aa~~~l~~lg--l~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 68 RFKRLKEEKEPLPDLILI--DG-GKGQL--------NAAKEVLKELG--LN--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp HHCCCHHHT----SEEEE--SS-SHHHH--------HHHHHHHHCTT--------EEEEESSSSE---
T ss_pred HHhcccccCCCCCCEEEE--cC-CHHHH--------HHHHHHHHHcC--CC--eEEEEEEeccccccc
Confidence 543 23368998887 77 45564 44566777663 33 555555554 5555
No 29
>PHA00370 III attachment protein
Probab=71.26 E-value=12 Score=39.64 Aligned_cols=8 Identities=13% Similarity=0.443 Sum_probs=3.2
Q ss_pred EEEEEEEe
Q 001660 309 FKVVIKLA 316 (1036)
Q Consensus 309 ~~v~I~~~ 316 (1036)
|++.|-..
T Consensus 256 Ye~~I~Cd 263 (297)
T PHA00370 256 YEFIIGCD 263 (297)
T ss_pred hhhhhcch
Confidence 34444433
No 30
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=69.51 E-value=32 Score=42.22 Aligned_cols=111 Identities=21% Similarity=0.189 Sum_probs=62.2
Q ss_pred CeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCccc-eeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHHH
Q 001660 775 PTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFR 853 (1036)
Q Consensus 775 ~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~k-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~ 853 (1036)
+..|-++|+||-.. .-.|+++|.-.| ....| .+=.+.+.. .+-.+|. .+|.|.|...+
T Consensus 381 ~~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~--~~~~dDy--------------a~m~Evl~RR~ 439 (574)
T TIGR00194 381 IKRIEIFDISHIDG----SQTVGSMVVFED-GKPLKASYRRYNINS--ITGGDDY--------------AAMREVLRRRY 439 (574)
T ss_pred CCEEEEEECCccCC----CcceEEEEEEeC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHHH
Confidence 36799999999863 236777777655 33321 111122221 1112454 46666664444
Q ss_pred HHh-C----CCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEee--cccccccccCC
Q 001660 854 RAT-G----QKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK--RHHTRLFANNH 919 (1036)
Q Consensus 854 ~~~-g----~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~K--rh~tRff~~~~ 919 (1036)
++- . .+|+-||| || +.||+.. ..++++++. ....|.+|-..| ||.+++|..+.
T Consensus 440 ~r~~~~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg--~~~~i~viglaK~~~~~~~i~~~~~ 499 (574)
T TIGR00194 440 SSIQKKNNLPLPDLILI--DG-GKGQLNA--------ALEVLKSLG--VVNKPIVIGLAKAKRHETDIFLIGD 499 (574)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--CCCCCcEEEEEecCCCceEEEeCCC
Confidence 331 1 47987776 76 5667544 345566653 212466777777 77788886543
No 31
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=63.49 E-value=2.7e+02 Score=33.53 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHH
Q 001660 638 DSIARGFCFELAQ 650 (1036)
Q Consensus 638 ~~~~~~f~~~L~~ 650 (1036)
++++...+++|++
T Consensus 590 eeev~kilde~vk 602 (727)
T PF05642_consen 590 EEEVKKILDELVK 602 (727)
T ss_pred HHHHHHHHHHHhc
Confidence 5566666666654
No 32
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=62.38 E-value=37 Score=41.85 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=7.6
Q ss_pred cceEeeceEEEecC
Q 001660 213 RCIVKANHFFAELP 226 (1036)
Q Consensus 213 ~i~l~tN~f~l~~~ 226 (1036)
+-.+.-|+|=+++.
T Consensus 636 p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 636 PRDLSENCFWVKVN 649 (1102)
T ss_pred ccccCccceeeecc
Confidence 44455666665553
No 33
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=61.14 E-value=39 Score=35.84 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=44.0
Q ss_pred CCCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCccceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHH--HH
Q 001660 773 DRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKEL--LI 850 (1036)
Q Consensus 773 ~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~--L~ 850 (1036)
..+.+|-|+|++|... ..-.+|++|. ++|++..-....++.-.-....|..+ -.|+|. |.
T Consensus 23 ~~~~~I~gvDiS~~~~---~~~~vaa~Vv-~~~~~~~~~~~~~~~~~~~~PYIPG~--------------LafRE~p~l~ 84 (208)
T cd06559 23 GEVRLVAGVDVSYKKD---GDLAVAAAVV-LDYPDLEVVETAVAVGEVTFPYIPGL--------------LAFREGPPLL 84 (208)
T ss_pred CCccEEEEEEeeeccC---CCeEEEEEEE-EECCCCcEEEEEEEEEecCCCCcchh--------------HHHhhHHHHH
Confidence 4678999999999751 2345565554 56666655554444333222223222 134443 32
Q ss_pred HHHHHhCCCCceEEEEecCCC
Q 001660 851 SFRRATGQKPQRIIFYRDGVS 871 (1036)
Q Consensus 851 ~f~~~~g~~P~~IIiyRDGVs 871 (1036)
.-.++-..+|+-|||==.|+.
T Consensus 85 ~~~~~l~~~PDlilVDG~G~~ 105 (208)
T cd06559 85 EALEKLKTKPDLLLVDGHGIA 105 (208)
T ss_pred HHHHhCCCCCCEEEEeCCccc
Confidence 222323468898888666654
No 34
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=54.69 E-value=1e+02 Score=37.46 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCcc-ceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHH
Q 001660 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1036)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 852 (1036)
.|.-|-++|+||-.. .-.|+++|.-.| .... +.+=.+.+.. .+-.+|. .+|.|.|...
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~p~k~~YR~f~Ik~--~~~~dDy--------------~~m~Evl~RR 423 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRN-GKPDKKNYRRFKIKT--VEGIDDF--------------ASIAEVVRRR 423 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeC-CccChhhcCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 466799999999753 236777776555 3222 1111222221 1112454 4666666444
Q ss_pred HHHh----CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeecccccccccC
Q 001660 853 RRAT----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANN 918 (1036)
Q Consensus 853 ~~~~----g~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~~ 918 (1036)
+++. +.+|+-||| || +-||+.. ..++++++. . .|.+|-..|+. .++|..+
T Consensus 424 ~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~~l~elg--~--~i~viglaK~~-e~i~~p~ 477 (519)
T PRK12306 424 YSRLLEENSELPDLIVI--DG-GKGQLSS--------AFKELRKLG--L--KIPLISIAKRE-EEIYVPG 477 (519)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--C--CCcEEEEEcCc-eEEEeCC
Confidence 4331 148987776 76 4567544 345666663 2 47788888875 5555443
No 35
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=54.20 E-value=1.2e+02 Score=37.18 Aligned_cols=10 Identities=0% Similarity=-0.227 Sum_probs=4.0
Q ss_pred CCceEEeeee
Q 001660 227 DKDLHQYDVT 236 (1036)
Q Consensus 227 ~~~iy~YdV~ 236 (1036)
+..+.+|.=+
T Consensus 896 ~sI~~r~nd~ 905 (944)
T KOG4307|consen 896 NSIRIRRNDD 905 (944)
T ss_pred CceeEeecCC
Confidence 3334444433
No 36
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=54.13 E-value=58 Score=40.30 Aligned_cols=10 Identities=40% Similarity=0.385 Sum_probs=4.5
Q ss_pred HHHHHHHHHc
Q 001660 339 ALQVLDIVLR 348 (1036)
Q Consensus 339 ~lq~Lnivlr 348 (1036)
+.|=|.|++.
T Consensus 700 taQnLsIflg 709 (1102)
T KOG1924|consen 700 TAQNLSIFLG 709 (1102)
T ss_pred HHHHHHHHHh
Confidence 3444445443
No 37
>PRK11617 endonuclease V; Provisional
Probab=50.60 E-value=2.4e+02 Score=30.33 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHhhcccccCcccccccccccccccchh
Q 001660 972 ENKFTADGLQSLTNNLCYTYARCTRSVSIGKLSLLPAFSYSS 1013 (1036)
Q Consensus 972 e~~~~~d~lq~lT~~LC~~y~r~t~sVsip~P~~yA~~~~~~ 1013 (1036)
-+.++.|+--.++-.+|=-| ++|.|+..||..++.
T Consensus 178 Gh~i~l~~A~~~v~~~~~~y-------RlPePlR~Ad~ls~~ 212 (224)
T PRK11617 178 GHRVSLDSALAWVQRCMKGY-------RLPEPTRWADALASR 212 (224)
T ss_pred CCCcCHHHHHHHHHHHccCC-------CCCHHHHHHHHHHhh
Confidence 35688999999998887433 799999999875543
No 38
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=43.63 E-value=1.7e+02 Score=36.54 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=60.6
Q ss_pred CCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCccc-eeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHH
Q 001660 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1036)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~k-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 852 (1036)
.|..|-++|+||-.. .-.|+++|.-.| ....+ .+=.+.+... +-.+|. .+|.|.|...
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~ik~~--~~~dDy--------------~~m~Evl~RR 472 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVD-GKPKKSDYRKFKLRSF--EGSDDY--------------AAMREVVTRR 472 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 467899999999863 236777776655 33221 1111222211 112454 4667766555
Q ss_pred HHHh----CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeeccccccccc
Q 001660 853 RRAT----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 917 (1036)
Q Consensus 853 ~~~~----g~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~ 917 (1036)
+.+- ..+|+-||| || +.||+. +..+++.++. . .|.+|-..|| ..++|..
T Consensus 473 ~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~~lg--~--~i~viglaK~-~e~i~~~ 525 (621)
T PRK14671 473 YSGSLAEELPLPDLIVI--DG-GKGQVN--------SAWKVLQELG--L--SVPVIGLAKR-LEEIFTP 525 (621)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--C--CCcEEEEEec-ccEEEeC
Confidence 4331 258987776 76 456654 3445666663 2 4778888884 4556554
No 39
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=42.79 E-value=1.9e+02 Score=36.10 Aligned_cols=109 Identities=26% Similarity=0.346 Sum_probs=62.6
Q ss_pred CCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCcc-ceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHH
Q 001660 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1036)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 852 (1036)
.|..|-++|+||-.. .-.|+++|.-.| .... +.+-.+.+.... .-++|+ .+|.|.|...
T Consensus 453 ~p~rIE~fDiSh~~G----~~~VasmVvf~~-G~p~k~~YR~f~ik~~~-~~~DD~--------------asM~Evl~RR 512 (691)
T PRK14672 453 IPTLIEGFDISHLGG----KYTVASLICFKN-GAPDTKNYRLFNLRAHD-TRIDDF--------------ASMREAIARR 512 (691)
T ss_pred CCCeEEEEECCccCC----cCceEEEEEEEC-CccChhhCCeeeccCCC-CCCchH--------------HHHHHHHHHH
Confidence 578999999999863 236788877665 3322 111122222110 113455 4677777555
Q ss_pred HHHh---CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeecccccccccC
Q 001660 853 RRAT---GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANN 918 (1036)
Q Consensus 853 ~~~~---g~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~~ 918 (1036)
+++. ..+|+-||| || +.||+. +.+++++++. . .|.+|-..||. ..+|-.+
T Consensus 513 ~~r~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elg--l--~i~vigLaKr~-e~i~~~~ 565 (691)
T PRK14672 513 YTHTPEGYTLPDLILV--DG-GIGHVS--------AAQHVLDALG--L--SIPLVGLAKRA-EELFIPN 565 (691)
T ss_pred hhcccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--C--CCcEEEEEecc-cEEEeCC
Confidence 5432 248987776 66 456644 4456666663 2 47788888865 4455443
No 40
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=37.44 E-value=2.8e+02 Score=34.53 Aligned_cols=100 Identities=21% Similarity=0.239 Sum_probs=55.5
Q ss_pred CCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCccc-eeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHH
Q 001660 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1036)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~k-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 852 (1036)
.|.-|-++|+||-.. .-.|+++|.-.| ....| .+=.+.+... +-.+|. .+|+|.|...
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------a~m~Evl~RR 440 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFED-GGPDKSEYRRYNIKGV--TGGDDY--------------AAMREVLTRR 440 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 477899999999753 236777776555 32221 1111222211 112454 4666666544
Q ss_pred HHH----hCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeec
Q 001660 853 RRA----TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKR 909 (1036)
Q Consensus 853 ~~~----~g~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Kr 909 (1036)
+++ ...+|+-||| || +.||+.. ..++++++. . .|.+|-..|.
T Consensus 441 ~~~~~~~~~~~PDLili--DG-GkgQl~~--------a~~~l~~lg--~--~i~v~glaK~ 486 (598)
T PRK00558 441 YSRLLKEFGPLPDLILI--DG-GKGQLNA--------AKEVLEELG--L--DIPVVGLAKG 486 (598)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHCC--C--CCcEEEEEec
Confidence 433 2358987776 77 5677544 345666663 2 3667766663
No 41
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=36.29 E-value=2.9e+02 Score=34.09 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=61.8
Q ss_pred CCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCccc-eeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHH
Q 001660 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1036)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~k-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 852 (1036)
.|..|-++|+||-.. .-.|+++|.-.| ....| .+=.+.+... +-.+|+ .+|.|.|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dD~--------------~~m~Evl~RR 418 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWED-GSMNKKEYRRYKIKTV--DGIDDY--------------ASLREVLTRR 418 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 236788877666 33321 1112223221 113455 5677777555
Q ss_pred HHHh----CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeeccccccccc
Q 001660 853 RRAT----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 917 (1036)
Q Consensus 853 ~~~~----g~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~ 917 (1036)
+++. ..+|+-||| || +.||+. +..++++++. . .|.+|-..|+. .++|..
T Consensus 419 ~~r~~~~~~~~PDLili--DG-GkgQl~--------aa~~~l~~lg--~--~i~v~glaK~~-e~i~~~ 471 (567)
T PRK14667 419 ARRYKEGENPMPDLWLI--DG-GKGQLS--------VGIEVRDRLG--L--NIKVFSLAKKE-EILYTE 471 (567)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--C--CCcEEEEEecC-cEEEcC
Confidence 4432 247987776 76 456654 3445666663 2 46788888865 556544
No 42
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=34.93 E-value=3e+02 Score=34.37 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=59.9
Q ss_pred CCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCcc-ceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHH
Q 001660 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1036)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 852 (1036)
.|..|-++|+||-.. .-.|+++|.-.| .... +.+=.+.+.. .+-.+|. .+|+|.|...
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~Ik~--~~~~DDy--------------a~M~Evl~RR 453 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWED-GKMKKSDYRKFIIKT--VVGVDDF--------------ASMREVVTRR 453 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 236777776555 3222 1111122221 1113454 4666666444
Q ss_pred HHH---hC-CCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeeccccccccc
Q 001660 853 RRA---TG-QKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 917 (1036)
Q Consensus 853 ~~~---~g-~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~ 917 (1036)
+++ .+ .+|+-||| || +.||+. +..+++.++. .. .|.+|-..|+. .++|-.
T Consensus 454 ~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elg--l~-~i~vigLaK~~-e~i~~p 507 (624)
T PRK14669 454 YSRLQEEKQPMPGLVLI--DG-GLGQLH--------AAAEALEAIG--IT-DQPLASIAKRE-EIIYVF 507 (624)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--CC-CCcEEEEecCC-eEEECC
Confidence 433 12 48987776 77 566754 3456666663 21 26788778876 445544
No 43
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.94 E-value=1.6e+02 Score=32.64 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=11.9
Q ss_pred CCCccccccceEeccCcc
Q 001660 509 QRPNYLPMEVCKIVEGQR 526 (1036)
Q Consensus 509 ~~~~ylP~Elc~i~~gQ~ 526 (1036)
...-|+|.-.|.|+.-|.
T Consensus 317 ~~tG~iP~NYvkIi~rq~ 334 (362)
T KOG3875|consen 317 GTTGLIPINYVKIIGRQP 334 (362)
T ss_pred CeeeeeehhhhhhhhcCC
Confidence 345588888888875433
No 44
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=31.87 E-value=4.6e+02 Score=32.42 Aligned_cols=111 Identities=21% Similarity=0.251 Sum_probs=61.9
Q ss_pred CCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCcc-ceeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHH
Q 001660 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1036)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 852 (1036)
.|..|-++|+||-.. .-.|+++|.-.| .... +.+=.+.+.......++|. .+|.|.|...
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~ik~~~~~~~DD~--------------a~M~Evl~RR 417 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKM-GKPFKDGYRVYKINSLLKGEIDDF--------------KAIKEVISRR 417 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeeccCCCCCCCCHH--------------HHHHHHHHHH
Confidence 467899999999863 236777777655 3332 1111222221100002454 4667766554
Q ss_pred HHH--h--CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeeccccccccc
Q 001660 853 RRA--T--GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 917 (1036)
Q Consensus 853 ~~~--~--g~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~Krh~tRff~~ 917 (1036)
+++ . +.+|+-||| || +.||+. +..++++++. ...+|.+|-..|+. .++|-.
T Consensus 418 ~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~~lg--~~~~i~v~gLaK~~-e~i~~~ 472 (574)
T PRK14670 418 YSKLINEQLELPNLILI--DG-GKGQLN--------AAYSILKGLK--IENKVKVCALAKKE-ETIFLP 472 (574)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--CCCCceEEEEecCC-eEEEeC
Confidence 433 1 248987776 77 456654 3455666663 32247788888866 445543
No 45
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=30.47 E-value=6.9e+02 Score=26.58 Aligned_cols=46 Identities=11% Similarity=0.027 Sum_probs=29.7
Q ss_pred cccCCceeEEEecCCCCCHHHHHHHHHHHhhcccccCcccccccccccccccc
Q 001660 959 GTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIGKLSLLPAFSY 1011 (1036)
Q Consensus 959 GTarPthY~Vl~de~~~~~d~lq~lT~~LC~~y~r~t~sVsip~P~~yA~~~~ 1011 (1036)
.|.+.++=.++-=.+..+.+..-+|+..||-. .++|.|+..||...
T Consensus 163 ~t~~~~~pi~vS~g~~i~l~sal~l~~~l~~~-------~rlpeptr~ad~~a 208 (212)
T COG1515 163 RTKERAKPIFVSPGHRISLPSALKLAQRLSKG-------YRLPEPTRLADILA 208 (212)
T ss_pred EecccCCCeEEccCCccCHHHHHHHHHHHccc-------ccCCCcccHHHHhh
Confidence 34433333333444557888888988877643 57888988887643
No 46
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=29.94 E-value=97 Score=32.80 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHhhcccccCcccccccccccccc
Q 001660 974 KFTADGLQSLTNNLCYTYARCTRSVSIGKLSLLPAF 1009 (1036)
Q Consensus 974 ~~~~d~lq~lT~~LC~~y~r~t~sVsip~P~~yA~~ 1009 (1036)
..+.+..-+++..+|=.. -++|-|++.||+
T Consensus 175 ~i~l~ta~~iv~~~~~~~------~r~PeP~r~Ad~ 204 (206)
T PF04493_consen 175 RISLETALEIVLKLCKGG------YRLPEPTRLADL 204 (206)
T ss_dssp SS-HHHHHHHHHHTSSTT------SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCCC------CcCCCcchhhhh
Confidence 468888888888877541 478999988875
No 47
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=29.19 E-value=4.2e+02 Score=33.34 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=56.2
Q ss_pred CCeEEEEEEecCCCCCCCCCCceeEEEEeeCCCCccc-eeEEEEEccCChhHhhhhhcccCCCCcCcchhhHHHHHHHHH
Q 001660 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1036)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~k-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 852 (1036)
.|..|-++|+||-.. .-.|+++|.-.| ....| .+-.+.+... + .+|+ .+|.|.|...
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~-G~p~k~~YR~f~i~~~--~-~dD~--------------~~m~ev~~RR 528 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFED-GKPARDAYRTYAFEDG--E-GDDY--------------GTLAAWAGRR 528 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEEC-CccChhhCCeeeCCCC--C-CChH--------------HHHHHHHHHH
Confidence 467899999999863 235677776555 33321 1112222221 1 1454 4667766555
Q ss_pred HHHhCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEee
Q 001660 853 RRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK 908 (1036)
Q Consensus 853 ~~~~g~~P~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~K 908 (1036)
+++...+|+-||| || +.||+.. ..++++++.- ...|.+|-..|
T Consensus 529 ~~~~~~~PDLili--DG-G~gQl~a--------a~~~l~e~g~--~~~~~v~~laK 571 (694)
T PRK14666 529 VESGPPWPDLLLV--DG-GRGQLAA--------VVRALEEAGM--GGLFAVASIAK 571 (694)
T ss_pred hcCCCCCCCEEEE--cC-CHHHHHH--------HHHHHHHcCC--CCCccEEEEec
Confidence 4433358987776 76 4567544 4456666632 22367777777
No 48
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=28.04 E-value=2.7e+02 Score=28.95 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=43.4
Q ss_pred CCcCcchhhHHHHHHHHHHHHh---CCCC--ceEEEEecCCCchhHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEee
Q 001660 835 PVRGAVSGGMIKELLISFRRAT---GQKP--QRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK 908 (1036)
Q Consensus 835 ~~~~~~~~~~i~~~L~~f~~~~---g~~P--~~IIiyRDGVsegq~~~v~~~E~~~ik~a~~~~~~~y~P~it~Ivv~K 908 (1036)
|..++.+...+..+++.|.... ...| ..|||.=||.....- . -...|.+|.+++.....-.|.||.|..
T Consensus 78 p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~-~----~~~~i~~a~~~l~~~~~i~i~~v~vG~ 151 (199)
T cd01457 78 PDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKD-A----VERVIIKASDELDADNELAISFLQIGR 151 (199)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHH-H----HHHHHHHHHHhhccccCceEEEEEeCC
Confidence 3445667778888887776532 2344 899999999976421 1 134566777766544345677776644
No 49
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=27.82 E-value=1e+03 Score=29.96 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=5.8
Q ss_pred CCCCCEEEEE
Q 001660 896 NYQPPVTFVV 905 (1036)
Q Consensus 896 ~y~P~it~Iv 905 (1036)
+--|.|+|-.
T Consensus 795 g~apr~~~~~ 804 (828)
T PF04094_consen 795 GSAPRLAFAL 804 (828)
T ss_pred CcCccccccC
Confidence 3457777654
No 50
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=27.64 E-value=1e+02 Score=32.63 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=4.4
Q ss_pred HHHHHHHcc
Q 001660 341 QVLDIVLRE 349 (1036)
Q Consensus 341 q~Lnivlr~ 349 (1036)
|++|+++++
T Consensus 160 q~~~~lv~k 168 (221)
T KOG0037|consen 160 QFYNLLVRK 168 (221)
T ss_pred HHHHHHHHH
Confidence 344555554
No 51
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=26.40 E-value=1.3e+02 Score=31.94 Aligned_cols=10 Identities=20% Similarity=0.354 Sum_probs=4.4
Q ss_pred cceEeeceEE
Q 001660 213 RCIVKANHFF 222 (1036)
Q Consensus 213 ~i~l~tN~f~ 222 (1036)
.|.+..|+|.
T Consensus 95 TcrlmI~mfd 104 (221)
T KOG0037|consen 95 TCRLMISMFD 104 (221)
T ss_pred HHHHHHHHhc
Confidence 3444444443
No 52
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.12 E-value=2.1e+02 Score=31.89 Aligned_cols=10 Identities=20% Similarity=-0.190 Sum_probs=4.7
Q ss_pred ceEeeceEEE
Q 001660 214 CIVKANHFFA 223 (1036)
Q Consensus 214 i~l~tN~f~l 223 (1036)
|.|..|+=+|
T Consensus 151 i~Vae~F~rL 160 (362)
T KOG3875|consen 151 ISVAENFGRL 160 (362)
T ss_pred HHHHHHHHHH
Confidence 4444555444
No 53
>PLN03138 Protein TOC75; Provisional
Probab=25.82 E-value=50 Score=41.77 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=8.8
Q ss_pred CCCCccceeEEE
Q 001660 804 DWPEVTKYAGLV 815 (1036)
Q Consensus 804 d~~~~~ky~~~~ 815 (1036)
||..++++.+++
T Consensus 642 ~~~~fNR~~~~~ 653 (796)
T PLN03138 642 KFPFFNRHQLTV 653 (796)
T ss_pred CCCceEEEEEEE
Confidence 567778887776
No 54
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=24.41 E-value=79 Score=22.91 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCCceEEE
Q 001660 847 ELLISFRRATGQKPQRIIF 865 (1036)
Q Consensus 847 ~~L~~f~~~~g~~P~~IIi 865 (1036)
..+.+|++.|+++|..|-|
T Consensus 15 ~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 15 SRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHHHHHHcCCCCCeeeC
Confidence 4678999999999998743
No 55
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=23.92 E-value=3.2e+02 Score=25.96 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=36.4
Q ss_pred CCCccEEEEEecCCC-CchhHHHHHHhhcccCceeeeeeecccccccHHHHHHHHHHHHhh
Q 001660 693 GKELDLLIVILPDNN-GSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVK 752 (1036)
Q Consensus 693 ~~~~~lvlvilp~~~-~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~Ni~lKiN~K 752 (1036)
+..|.|+++.+.++. +..|...|.-.+.++||.+..+.... ....+-+...+.++|.-
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 356889888886653 45788888777789999998887632 12455667788888743
No 56
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=23.67 E-value=3.7e+02 Score=33.44 Aligned_cols=9 Identities=11% Similarity=0.457 Sum_probs=4.5
Q ss_pred CccHHHHHH
Q 001660 408 PLPVIDFVQ 416 (1036)
Q Consensus 408 ~~~l~d~~~ 416 (1036)
..||++.|.
T Consensus 369 ~ep~~~~la 377 (828)
T PF04094_consen 369 AEPLLQVLA 377 (828)
T ss_pred cchhhhhhh
Confidence 345555553
No 57
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=22.43 E-value=3.8e+02 Score=29.57 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=48.5
Q ss_pred ceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCC----CCccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccEEE
Q 001660 625 NHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNP----EPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLI 700 (1036)
Q Consensus 625 ~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~----~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvl 700 (1036)
+.++-+.|++.........-.+.+.+.|+.+||++.. +|.- ..........+.+-.-...+++ +.+..|
T Consensus 132 ktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~s---d~gv~gaqqfIlE~vp~~i~kY----Gkdtaf 204 (275)
T PF12683_consen 132 KTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTS---DVGVAGAQQFILEDVPKWIKKY----GKDTAF 204 (275)
T ss_dssp S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SS---TCHHHHHHHHHHHHHHHHHHHH-----S--EE
T ss_pred ceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCC---CCCcHHHHHHHHHHHHHHHHHh----CCceeE
Confidence 3445567898877777777778999999999998843 1211 1111111122222233344444 345566
Q ss_pred EEecCCCCchhHHHHHHhhcccCceeeeeeecc
Q 001660 701 VILPDNNGSLYGDLKRICETDLGLVSQCCLTKH 733 (1036)
Q Consensus 701 vilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t 733 (1036)
+-+.+. ..=.-||++++...=++-||+-..+
T Consensus 205 f~TN~a--~~epllk~~~~~g~i~~e~~~psp~ 235 (275)
T PF12683_consen 205 FCTNDA--MTEPLLKQALEYGGIFPEADLPSPL 235 (275)
T ss_dssp EESSHH--HHHHHHHHHHHH--BB---SS--TT
T ss_pred EecCcc--ccHHHHHHHHHcCCEEEeCCCCChh
Confidence 666432 2235688888765556667765443
No 58
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=21.91 E-value=1.3e+02 Score=31.60 Aligned_cols=48 Identities=25% Similarity=0.402 Sum_probs=32.5
Q ss_pred CCccEEEEEecCCCCchhHHHHHHhhcccCceeeeeeecccccccHHHHHHHH
Q 001660 694 KELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVA 746 (1036)
Q Consensus 694 ~~~~lvlvilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~Ni~ 746 (1036)
+-+.++++--..+-.+.|+.||+ ..+.|+.|-|++.-++ +.|.+.|++
T Consensus 130 etVSiv~ftd~wrP~SfydkI~~--Nr~~glHTLcLLDIkv---kEqs~enl~ 177 (272)
T KOG3123|consen 130 ETVSIVFFTDNWRPESFYDKIKE--NRQLGLHTLCLLDIKV---KEQSVENLA 177 (272)
T ss_pred cEEEEEEEccCcCchhHHHHHHH--hhhcCceeEEEEEEee---ccHHHHHHh
Confidence 44555655555566778999995 6899999999986433 334444443
No 59
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=21.10 E-value=9.7e+02 Score=27.04 Aligned_cols=104 Identities=21% Similarity=0.175 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCccc---CC--CCccCCCCC--CchhHHHHHHHHHHHHHHhcCCCCCccEEEEEecCCCC-----chhHH
Q 001660 646 FELAQMCYISGMAF---NP--EPVIPPISA--RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNG-----SLYGD 713 (1036)
Q Consensus 646 ~~L~~~~~~~Gm~i---~~--~p~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~~~-----~~Y~~ 713 (1036)
..|++.+..+||+. .+ +|+...... =|++-...|+++.+.+.+ .+++|++.|-|..+- ..+..
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~-----~~V~Fv~aisPg~~~~~s~~~d~~~ 92 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKA-----NGVDFVYAISPGLDICYSSEEDFEA 92 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHH-----TT-EEEEEEBGTTT--TSHHHHHHH
T ss_pred HHHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHH-----cCCEEEEEECcccccccCcHHHHHH
Confidence 35677888888874 22 243322111 144445667777776654 679999999998653 23566
Q ss_pred HHHHhh--cccCceeeeeeecccc-----------cccHHHHHHHHHHHHhhcC
Q 001660 714 LKRICE--TDLGLVSQCCLTKHVF-----------KMSKQYMANVALKINVKVG 754 (1036)
Q Consensus 714 IK~~~e--~~~gI~TQci~~~t~~-----------K~~~q~~~Ni~lKiN~KlG 754 (1036)
||..++ .++||-.=+|+.+-+. +...+--..|+..|+..|.
T Consensus 93 L~~K~~ql~~lGvr~FailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~ 146 (306)
T PF07555_consen 93 LKAKFDQLYDLGVRSFAILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELI 146 (306)
T ss_dssp HHHHHHHHHCTT--EEEEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCEEEEeecCCCCccccccccccchHHHHHHHHHHHHHHHHh
Confidence 665555 4579998888877665 1223344577888877765
No 60
>PLN03138 Protein TOC75; Provisional
Probab=20.83 E-value=72 Score=40.43 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=11.2
Q ss_pred CCccccccceE-eccCcccc
Q 001660 510 RPNYLPMEVCK-IVEGQRYS 528 (1036)
Q Consensus 510 ~~~ylP~Elc~-i~~gQ~~~ 528 (1036)
++.++=-||-. +.||+.+.
T Consensus 364 rD~VIRREL~~~lkeGd~fN 383 (796)
T PLN03138 364 QLPIIDRELPKQLRQGHIFN 383 (796)
T ss_pred cCeEEeeecccccCCCcccC
Confidence 44455556653 56777774
Done!