BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001663
(1035 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 154/330 (46%), Gaps = 31/330 (9%)
Query: 659 DPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKD 718
D K +QN++I L + + +E+ +LE N L ++++L+K P E+ + L E K+
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 719 ESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSR 778
E L +E+F + VP R++A+L+ F +VE +K ++ AACEELR S
Sbjct: 163 E-YDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 221
Query: 779 MFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQEIIRTE 838
F LLE L GN MN G+ A F AD K TLLHF+ +
Sbjct: 222 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELC---- 277
Query: 839 GARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRG 898
N +P V EL++V+KA+ + ++ L + ++ +
Sbjct: 278 ------ENDHPE----------------VLKFPDELAHVEKASRVSAENLQKSLDQMKKQ 315
Query: 899 LGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFH 958
+ ++ VQ N DE + KF E M F+K A+E+ +++ S +L KE+ +YF
Sbjct: 316 IADVERDVQ-NFPAATDE-KDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFV 373
Query: 959 GNSAREEAHPFRIFMVVRDFLTVLDRVCKE 988
+ + F FM + +F + + KE
Sbjct: 374 FDPKKLSVEEF--FMDLHNFRNMFLQAVKE 401
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 154/330 (46%), Gaps = 31/330 (9%)
Query: 659 DPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKD 718
D K +QN++I L + + +E+ +LE N L ++++L+K P E+ + L E K+
Sbjct: 84 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 143
Query: 719 ESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSR 778
E L +E+F + VP R++A+L+ F +VE +K ++ AACEELR S
Sbjct: 144 E-YDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 202
Query: 779 MFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQEIIRTE 838
F LLE L GN MN G+ A F AD K TLLHF+
Sbjct: 203 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLA------- 255
Query: 839 GARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRG 898
+ N +P V EL++V+KA+ + ++ L + ++ +
Sbjct: 256 ---ELCENDHPE----------------VLKFPDELAHVEKASRVSAENLQKSLDQMKKQ 296
Query: 899 LGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFH 958
+ ++ VQ N DE + KF E M F+K A+E+ +++ S +L KE+ +YF
Sbjct: 297 IADVERDVQ-NFPAATDE-KDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFV 354
Query: 959 GNSAREEAHPFRIFMVVRDFLTVLDRVCKE 988
+ + F FM + +F + + KE
Sbjct: 355 FDPKKLSVEEF--FMDLHNFRNMFLQAVKE 382
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 154/330 (46%), Gaps = 31/330 (9%)
Query: 659 DPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKD 718
D K +QN++I L + + +E+ +LE N L ++++L+K P E+ + L E K+
Sbjct: 13 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 719 ESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSR 778
E L +E+F + VP R++A+L+ F +VE +K ++ AACEELR S
Sbjct: 73 E-YDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 131
Query: 779 MFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQEIIRTE 838
F LLE L GN MN G+ A F AD K TLLHF+
Sbjct: 132 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLA------- 184
Query: 839 GARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRG 898
+ N +P V EL++V+KA+ + ++ L + ++ +
Sbjct: 185 ---ELCENDHPE----------------VLKFPDELAHVEKASRVSAENLQKSLDQMKKQ 225
Query: 899 LGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFH 958
+ ++ VQ N DE + KF E M F+K A+E+ +++ S +L KE+ +YF
Sbjct: 226 IADVERDVQ-NFPAATDE-KDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFV 283
Query: 959 GNSAREEAHPFRIFMVVRDFLTVLDRVCKE 988
+ + F FM + +F + + KE
Sbjct: 284 FDPKKLSVEEF--FMDLHNFRNMFLQAVKE 311
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 29/245 (11%)
Query: 657 VLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEY 716
+L+ +++N+AI LR + EE+C A+ + TL + +E L++ PT+ E + L++Y
Sbjct: 86 LLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQY 145
Query: 717 KDES--LTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEEL 774
+ E L +L ++F+ V +R+ M ++ NF+ ++ L + AA +
Sbjct: 146 ERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASV 205
Query: 775 RNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQEI 834
++S+ ++LE +L GN MN + RG + F D K TLLHF+ +
Sbjct: 206 KSSQKLKQMLEIILALGNYMN-SSKRGAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALTV 264
Query: 835 IRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSK 894
+ P ++ EL V+KAAA+ + + +V +
Sbjct: 265 ----------KEKYPE----------------LANFWQELHFVEKAAAVSLENVLLDVKE 298
Query: 895 LSRGL 899
L RG+
Sbjct: 299 LGRGM 303
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 143/322 (44%), Gaps = 43/322 (13%)
Query: 593 LKPLHWDKVRASSDREMVWDHLRSSS-FKLN--EEMIETL--------FIVNTPSSKPSQ 641
LK +W K+ + VW + + FK+ E++ T F VN+ S +
Sbjct: 15 LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEA 74
Query: 642 TTPRTVLPTP--NSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGN-ADTLGTELLE 698
L + E V+D +++QN ILL L ++ +E+ A+L + + L ++LE
Sbjct: 75 DAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLE 134
Query: 699 SLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVE 758
LLK P K + L+E+K E L ++ A++FL + + +R+ ++ + F V
Sbjct: 135 QLLKFVPEKSDIDLLEEHKHE-LDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVA 193
Query: 759 YLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXX 818
+K E + + EE+ S +LLE VL GN MN G RG+A+ F
Sbjct: 194 EVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLNKIADTK 252
Query: 819 GA-DGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNV 877
+ D TLLH+++ + N+ P+ V L+ EL ++
Sbjct: 253 SSIDKNITLLHYLITIV----------ENKYPS----------------VLNLNEELRDI 286
Query: 878 KKAAAMDSDVLSSEVSKLSRGL 899
+AA ++ L E+S L GL
Sbjct: 287 PQAAKVNMTELDKEISTLRSGL 308
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 143/322 (44%), Gaps = 43/322 (13%)
Query: 593 LKPLHWDKVRASSDREMVWDHLRSSS-FKLN--EEMIETL--------FIVNTPSSKPSQ 641
LK +W K+ + VW + + FK+ E++ T F VN+ S +
Sbjct: 17 LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEA 76
Query: 642 TTPRTVLPTP--NSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGN-ADTLGTELLE 698
L + E V+D +++QN ILL L ++ +E+ A+L + + L ++LE
Sbjct: 77 DAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLE 136
Query: 699 SLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVE 758
LLK P K + L+E+K E L ++ A++FL + + +R+ ++ + F V
Sbjct: 137 QLLKFVPEKSDIDLLEEHKHE-LDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVA 195
Query: 759 YLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXX 818
+K E + + EE+ S +LLE VL GN MN G RG+A+ F
Sbjct: 196 EVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLNKIADTK 254
Query: 819 GA-DGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNV 877
+ D TLLH+++ + N+ P+ V L+ EL ++
Sbjct: 255 SSIDKNITLLHYLITIV----------ENKYPS----------------VLNLNEELRDI 288
Query: 878 KKAAAMDSDVLSSEVSKLSRGL 899
+AA ++ L E+S L GL
Sbjct: 289 PQAAKVNMTELDKEISTLRSGL 310
>pdb|4ICH|A Chain A, Crystal Structure Of A Putative Tetr Family
Transcriptional Regulator From Saccharomonospora Viridis
Dsm 43017
pdb|4ICH|B Chain B, Crystal Structure Of A Putative Tetr Family
Transcriptional Regulator From Saccharomonospora Viridis
Dsm 43017
Length = 311
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 889 SSEVSKLSRGL--GNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVA 946
S E+ + RGL G + A+G+DES K S+S+N + + E++RI H V
Sbjct: 28 SDELRRRVRGLIHSRPGAQREFAAAIGLDES--KLSKSLNGTRRFSPHELVRIAEHSGVT 85
Query: 947 LS 948
++
Sbjct: 86 VN 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,750,067
Number of Sequences: 62578
Number of extensions: 671429
Number of successful extensions: 1350
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1330
Number of HSP's gapped (non-prelim): 13
length of query: 1035
length of database: 14,973,337
effective HSP length: 109
effective length of query: 926
effective length of database: 8,152,335
effective search space: 7549062210
effective search space used: 7549062210
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)