Query 001663
Match_columns 1035
No_of_seqs 269 out of 1084
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00498 FH2 Formin Homology 100.0 3.9E-69 8.4E-74 621.6 38.5 371 589-991 6-379 (432)
2 KOG1924 RhoA GTPase effector D 100.0 3.6E-65 7.8E-70 586.6 39.7 385 573-992 609-999 (1102)
3 PF02181 FH2: Formin Homology 100.0 8.5E-66 1.8E-70 581.5 33.4 362 589-983 7-370 (370)
4 KOG1922 Rho GTPase effector BN 100.0 2.1E-51 4.5E-56 507.8 38.6 406 587-1005 390-802 (833)
5 KOG1923 Rac1 GTPase effector F 100.0 2.3E-49 4.9E-54 460.0 29.3 367 584-990 362-734 (830)
6 KOG1925 Rac1 GTPase effector F 100.0 3E-48 6.5E-53 431.2 33.6 398 589-1026 280-703 (817)
7 KOG1924 RhoA GTPase effector D 98.6 4E-06 8.8E-11 100.5 21.0 29 607-635 627-664 (1102)
8 smart00498 FH2 Formin Homology 98.0 2.1E-05 4.5E-10 92.5 11.1 114 877-990 318-432 (432)
9 KOG1922 Rho GTPase effector BN 96.2 1.3 2.8E-05 56.8 26.7 142 89-243 6-155 (833)
10 PF01299 Lamp: Lysosome-associ 88.8 0.27 5.8E-06 55.7 2.7 32 119-150 270-301 (306)
11 PF01034 Syndecan: Syndecan do 87.7 0.18 3.9E-06 44.7 0.2 43 118-160 8-50 (64)
12 KOG0994 Extracellular matrix g 87.4 39 0.00084 44.6 19.8 42 659-701 1469-1517(1758)
13 PF01102 Glycophorin_A: Glycop 86.1 0.69 1.5E-05 46.1 3.4 14 138-151 81-94 (122)
14 KOG0994 Extracellular matrix g 84.0 31 0.00067 45.4 16.6 19 780-798 1470-1488(1758)
15 KOG3671 Actin regulatory prote 83.5 16 0.00035 44.0 13.3 28 589-616 477-504 (569)
16 KOG3671 Actin regulatory prote 82.4 15 0.00033 44.2 12.6 18 146-164 59-76 (569)
17 PF15102 TMEM154: TMEM154 prot 80.1 0.87 1.9E-05 46.6 1.4 41 97-138 35-75 (146)
18 PF04478 Mid2: Mid2 like cell 80.1 0.22 4.8E-06 51.1 -2.8 33 118-150 48-80 (154)
19 PF10234 Cluap1: Clusterin-ass 79.7 37 0.00081 38.4 14.0 76 804-903 106-189 (267)
20 PHA03247 large tegument protei 78.7 1.5E+02 0.0033 42.8 21.1 79 874-961 1656-1738(3151)
21 PF05454 DAG1: Dystroglycan (D 78.2 0.68 1.5E-05 52.4 0.0 40 227-277 223-262 (290)
22 PF08374 Protocadherin: Protoc 78.0 4.5 9.8E-05 43.9 6.0 16 122-137 39-54 (221)
23 PHA03291 envelope glycoprotein 77.4 13 0.00027 43.2 9.5 50 31-81 194-243 (401)
24 KOG2460 Signal recognition par 77.4 1.1E+02 0.0025 37.6 17.6 66 925-990 420-486 (593)
25 KOG1923 Rac1 GTPase effector F 76.6 4.5 9.8E-05 50.6 6.2 28 772-799 558-585 (830)
26 KOG1962 B-cell receptor-associ 74.9 95 0.0021 34.2 14.9 30 727-757 11-40 (216)
27 PF08336 P4Ha_N: Prolyl 4-Hydr 74.1 26 0.00056 35.1 9.9 72 919-994 14-85 (134)
28 PF08580 KAR9: Yeast cortical 73.1 52 0.0011 41.9 14.3 26 934-959 242-267 (683)
29 PF02439 Adeno_E3_CR2: Adenovi 72.9 4.9 0.00011 32.4 3.5 28 121-149 7-34 (38)
30 PF12191 stn_TNFRSF12A: Tumour 72.4 1.1 2.5E-05 44.6 -0.1 31 122-152 79-109 (129)
31 PHA03247 large tegument protei 70.6 2.4E+02 0.0051 41.1 19.9 8 606-613 3024-3031(3151)
32 cd07627 BAR_Vps5p The Bin/Amph 70.0 1.3E+02 0.0028 32.6 14.9 66 924-995 147-212 (216)
33 PRK10132 hypothetical protein; 69.6 34 0.00074 33.7 9.2 72 886-961 15-86 (108)
34 PF12325 TMF_TATA_bd: TATA ele 69.0 63 0.0014 32.4 11.1 51 930-984 64-114 (120)
35 PF03114 BAR: BAR domain; Int 68.0 26 0.00057 36.5 8.9 22 754-775 25-46 (229)
36 PF12768 Rax2: Cortical protei 67.4 3.4 7.5E-05 46.7 2.3 32 120-151 230-261 (281)
37 PF09325 Vps5: Vps5 C terminal 66.7 1.1E+02 0.0024 32.9 13.5 66 924-995 167-232 (236)
38 PF08693 SKG6: Transmembrane a 66.4 0.47 1E-05 38.5 -3.4 7 122-128 11-17 (40)
39 PF14575 EphA2_TM: Ephrin type 65.9 5.8 0.00012 36.4 3.0 28 122-150 2-29 (75)
40 PF06013 WXG100: Proteins of 1 65.7 58 0.0013 28.5 9.4 65 924-994 8-72 (86)
41 cd07593 BAR_MUG137_fungi The B 64.9 12 0.00025 41.0 5.6 54 931-991 146-203 (215)
42 PRK10404 hypothetical protein; 63.7 58 0.0013 31.7 9.5 72 886-961 8-80 (101)
43 PTZ00370 STEVOR; Provisional 62.9 6.9 0.00015 44.2 3.5 14 137-150 272-285 (296)
44 PRK11637 AmiB activator; Provi 62.1 2E+02 0.0044 34.3 15.7 22 754-775 95-116 (428)
45 PF05337 CSF-1: Macrophage col 61.6 2.7 5.8E-05 47.1 0.0 28 123-151 229-256 (285)
46 TIGR01478 STEVOR variant surfa 60.8 9 0.0002 43.3 3.9 14 137-150 276-289 (295)
47 PF14991 MLANA: Protein melan- 60.2 1.7 3.6E-05 42.7 -1.6 26 126-151 29-54 (118)
48 PF06365 CD34_antigen: CD34/Po 57.1 8.2 0.00018 41.8 2.7 29 120-148 101-129 (202)
49 KOG3091 Nuclear pore complex, 56.9 4.6E+02 0.01 32.3 19.0 14 735-748 334-347 (508)
50 PF01213 CAP_N: Adenylate cycl 56.7 4.1 8.9E-05 46.8 0.4 7 572-578 267-273 (312)
51 KOG0995 Centromere-associated 56.6 4.4E+02 0.0095 33.0 17.0 31 745-775 361-391 (581)
52 cd07603 BAR_ACAPs The Bin/Amph 55.0 95 0.0021 33.6 10.3 22 975-996 103-124 (200)
53 KOG2675 Adenylate cyclase-asso 54.6 10 0.00022 45.0 3.2 14 722-735 455-468 (480)
54 COG1579 Zn-ribbon protein, pos 54.6 1.5E+02 0.0032 33.2 11.9 79 880-958 49-127 (239)
55 PF05510 Sarcoglycan_2: Sarcog 54.6 13 0.00029 43.8 4.1 35 118-152 283-317 (386)
56 PF08693 SKG6: Transmembrane a 54.2 2 4.2E-05 35.0 -1.8 20 120-139 13-32 (40)
57 cd07617 BAR_Endophilin_B2 The 53.2 2.2E+02 0.0048 31.5 12.8 62 930-994 157-218 (220)
58 KOG0804 Cytoplasmic Zn-finger 52.3 1.1E+02 0.0024 36.9 10.9 86 868-957 364-451 (493)
59 KOG3617 WD40 and TPR repeat-co 52.2 6.9E+02 0.015 33.0 19.2 190 724-959 1121-1320(1416)
60 PF05308 Mito_fiss_reg: Mitoch 52.2 14 0.0003 41.4 3.6 9 240-248 26-34 (253)
61 PF08855 DUF1825: Domain of un 51.4 2.6E+02 0.0056 27.8 11.7 98 884-989 6-107 (108)
62 cd07623 BAR_SNX1_2 The Bin/Amp 50.7 3.2E+02 0.007 29.8 13.8 66 924-995 153-218 (224)
63 KOG0971 Microtubule-associated 49.7 4.1E+02 0.0089 35.0 15.6 272 670-994 240-549 (1243)
64 PF11932 DUF3450: Protein of u 49.7 1.4E+02 0.0031 33.0 11.0 67 876-951 35-101 (251)
65 cd07637 BAR_ACAP3 The Bin/Amph 49.4 3.8E+02 0.0082 29.1 17.0 28 750-777 4-31 (200)
66 PF14523 Syntaxin_2: Syntaxin- 49.2 1.4E+02 0.003 28.1 9.4 52 891-945 4-55 (102)
67 KOG4673 Transcription factor T 48.8 7E+02 0.015 32.1 19.0 50 936-989 906-955 (961)
68 PF10805 DUF2730: Protein of u 48.3 1.2E+02 0.0026 29.5 9.0 69 880-955 32-100 (106)
69 PF15050 SCIMP: SCIMP protein 47.8 25 0.00055 35.1 4.1 29 120-151 10-39 (133)
70 PF05957 DUF883: Bacterial pro 47.1 1.1E+02 0.0024 28.7 8.4 70 887-960 2-72 (94)
71 cd07594 BAR_Endophilin_B The B 47.0 1.2E+02 0.0025 33.8 9.6 29 931-959 167-195 (229)
72 PF05278 PEARLI-4: Arabidopsis 46.6 1.2E+02 0.0027 34.3 9.8 84 872-959 156-239 (269)
73 smart00503 SynN Syntaxin N-ter 46.6 2.5E+02 0.0055 26.6 10.9 63 886-950 11-73 (117)
74 PTZ00208 65 kDa invariant surf 45.7 11 0.00023 44.5 1.5 33 116-151 384-417 (436)
75 COG4575 ElaB Uncharacterized c 45.6 1.6E+02 0.0034 29.1 9.0 72 886-961 11-83 (104)
76 KOG3771 Amphiphysin [Intracell 45.4 2.6E+02 0.0057 34.0 12.7 27 932-958 162-189 (460)
77 KOG4302 Microtubule-associated 45.1 2.4E+02 0.0051 36.0 12.8 38 915-952 225-262 (660)
78 PF10455 BAR_2: Bin/amphiphysi 44.5 5.5E+02 0.012 29.6 14.7 26 750-775 23-48 (289)
79 KOG4482 Sarcoglycan complex, a 44.2 27 0.00058 41.0 4.3 33 120-152 297-329 (449)
80 PF06120 Phage_HK97_TLTM: Tail 44.2 3.1E+02 0.0067 31.8 12.7 38 869-906 52-90 (301)
81 COG5185 HEC1 Protein involved 44.1 6.9E+02 0.015 30.7 15.6 38 919-956 392-429 (622)
82 PF02009 Rifin_STEVOR: Rifin/s 43.9 23 0.00049 40.6 3.7 28 122-149 259-286 (299)
83 cd07595 BAR_RhoGAP_Rich-like T 43.8 2.4E+02 0.0052 31.5 11.5 28 931-958 162-189 (244)
84 smart00503 SynN Syntaxin N-ter 43.7 2.9E+02 0.0063 26.2 11.4 25 885-909 3-27 (117)
85 PRK15319 AIDA autotransporter- 43.2 34 0.00073 47.3 5.5 8 608-615 1762-1769(2039)
86 PTZ00382 Variant-specific surf 42.6 6.9 0.00015 37.5 -0.5 6 124-129 71-76 (96)
87 PF05278 PEARLI-4: Arabidopsis 42.3 2.6E+02 0.0057 31.8 11.5 36 922-957 195-230 (269)
88 PF04728 LPP: Lipoprotein leuc 42.2 1.9E+02 0.004 25.6 8.0 23 885-907 5-27 (56)
89 PF03915 AIP3: Actin interacti 42.0 7.2E+02 0.016 30.2 16.8 97 883-992 260-363 (424)
90 COG0497 RecN ATPase involved i 42.0 5E+02 0.011 32.6 14.7 34 923-956 321-354 (557)
91 PF03999 MAP65_ASE1: Microtubu 41.5 20 0.00043 44.9 3.1 36 923-958 282-317 (619)
92 KOG1118 Lysophosphatidic acid 41.4 1.6E+02 0.0035 34.0 9.7 33 787-819 92-124 (366)
93 PF12325 TMF_TATA_bd: TATA ele 41.1 2.8E+02 0.006 27.9 10.4 34 922-955 84-117 (120)
94 KOG0995 Centromere-associated 41.0 8.4E+02 0.018 30.7 17.0 35 872-906 318-355 (581)
95 PF04420 CHD5: CHD5-like prote 40.6 97 0.0021 32.3 7.5 66 886-957 36-103 (161)
96 PF05659 RPW8: Arabidopsis bro 39.9 41 0.00089 34.7 4.5 86 696-786 39-132 (147)
97 KOG2675 Adenylate cyclase-asso 39.6 21 0.00044 42.6 2.6 14 656-669 392-405 (480)
98 KOG2129 Uncharacterized conser 39.3 7.8E+02 0.017 29.9 19.8 62 922-983 277-341 (552)
99 KOG0933 Structural maintenance 39.3 3.2E+02 0.007 36.3 12.7 32 765-798 599-630 (1174)
100 PF15234 LAT: Linker for activ 38.9 2.4E+02 0.0052 30.4 9.8 19 228-246 66-84 (230)
101 cd07637 BAR_ACAP3 The Bin/Amph 38.7 1.1E+02 0.0024 33.1 7.8 21 885-905 4-24 (200)
102 PF07200 Mod_r: Modifier of ru 38.5 2.9E+02 0.0062 28.0 10.4 45 938-993 100-144 (150)
103 PRK11637 AmiB activator; Provi 38.1 4.3E+02 0.0094 31.5 13.4 34 924-957 100-133 (428)
104 cd07601 BAR_APPL The Bin/Amphi 38.1 2.4E+02 0.0052 31.1 10.3 21 975-995 107-127 (215)
105 PF04108 APG17: Autophagy prot 38.0 7.6E+02 0.016 29.6 15.3 229 664-991 122-357 (412)
106 PF08700 Vps51: Vps51/Vps67; 37.8 3.2E+02 0.0068 24.9 10.0 63 881-955 17-79 (87)
107 PHA03265 envelope glycoprotein 37.7 9.7 0.00021 44.0 -0.4 33 120-152 348-380 (402)
108 PF12889 DUF3829: Protein of u 37.4 5.9E+02 0.013 27.9 14.1 195 694-986 79-276 (276)
109 COG5178 PRP8 U5 snRNP spliceos 36.7 23 0.00051 46.3 2.6 18 771-788 629-646 (2365)
110 KOG2114 Vacuolar assembly/sort 36.2 4.9E+02 0.011 34.1 13.6 18 656-673 406-423 (933)
111 cd00179 SynN Syntaxin N-termin 36.2 4.2E+02 0.009 26.5 11.1 62 887-950 10-71 (151)
112 TIGR01167 LPXTG_anchor LPXTG-m 36.0 38 0.00082 25.8 2.7 9 141-149 25-33 (34)
113 PF06679 DUF1180: Protein of u 35.7 5.1E+02 0.011 27.5 11.7 9 4-12 8-16 (163)
114 PF14914 LRRC37AB_C: LRRC37A/B 35.5 45 0.00098 34.5 3.9 31 119-150 120-150 (154)
115 cd07606 BAR_SFC_plant The Bin/ 35.4 3.6E+02 0.0079 29.4 11.0 21 975-995 105-125 (202)
116 PF14712 Snapin_Pallidin: Snap 35.4 1.8E+02 0.0039 27.0 7.8 74 919-995 6-79 (92)
117 PF09716 ETRAMP: Malarial earl 34.8 41 0.00089 31.5 3.3 32 118-149 52-83 (84)
118 PF09726 Macoilin: Transmembra 34.7 2.2E+02 0.0049 36.5 10.7 101 886-1000 548-648 (697)
119 KOG2391 Vacuolar sorting prote 34.6 2.5E+02 0.0054 33.0 9.9 43 922-964 269-316 (365)
120 PF01544 CorA: CorA-like Mg2+ 34.5 2.3E+02 0.005 31.0 9.7 22 885-906 153-174 (292)
121 PHA03283 envelope glycoprotein 34.3 51 0.0011 40.3 4.7 16 136-151 414-430 (542)
122 PF04740 LXG: LXG domain of WX 34.1 5.8E+02 0.013 26.9 13.7 66 890-957 17-84 (204)
123 PF14610 DUF4448: Protein of u 34.1 9.3 0.0002 40.5 -1.2 19 119-137 157-175 (189)
124 COG5034 TNG2 Chromatin remodel 34.0 1.9E+02 0.004 32.7 8.5 43 915-957 61-103 (271)
125 cd07588 BAR_Amphiphysin The Bi 33.1 2.9E+02 0.0062 30.3 9.9 40 887-931 23-62 (211)
126 TIGR00383 corA magnesium Mg(2+ 33.1 1.7E+02 0.0038 33.0 8.6 12 825-836 134-145 (318)
127 PF02480 Herpes_gE: Alphaherpe 32.9 14 0.00031 44.3 0.0 12 133-144 364-375 (439)
128 KOG3653 Transforming growth fa 32.8 75 0.0016 38.7 5.7 34 118-151 152-185 (534)
129 KOG4672 Uncharacterized conser 32.8 1.4E+02 0.003 35.7 7.7 11 675-685 470-480 (487)
130 PRK09752 adhesin; Provisional 32.4 43 0.00094 44.5 4.0 8 608-615 985-992 (1250)
131 smart00806 AIP3 Actin interact 32.1 1E+03 0.022 29.0 17.1 50 933-992 249-298 (426)
132 PF15065 NCU-G1: Lysosomal tra 32.0 29 0.00063 40.7 2.2 28 122-149 321-348 (350)
133 PF04156 IncA: IncA protein; 31.5 6.3E+02 0.014 26.5 12.6 28 927-954 123-150 (191)
134 PF06008 Laminin_I: Laminin Do 31.5 4.9E+02 0.011 29.0 11.7 21 939-959 151-171 (264)
135 KOG3651 Protein kinase C, alph 31.3 7.4E+02 0.016 28.9 12.7 46 776-832 206-251 (429)
136 KOG3647 Predicted coiled-coil 31.2 3.3E+02 0.0071 31.1 9.8 31 873-903 102-132 (338)
137 PF10158 LOH1CR12: Tumour supp 30.9 4.4E+02 0.0096 26.9 10.1 69 884-958 50-118 (131)
138 PF07544 Med9: RNA polymerase 30.9 3.1E+02 0.0067 25.6 8.4 35 876-910 14-48 (83)
139 PF06024 DUF912: Nucleopolyhed 30.8 24 0.00052 34.1 1.1 7 145-151 88-94 (101)
140 PF12301 CD99L2: CD99 antigen 30.8 47 0.001 35.2 3.3 32 118-150 113-144 (169)
141 PF05615 THOC7: Tho complex su 30.6 4E+02 0.0087 26.8 9.9 69 886-956 49-117 (139)
142 PF10577 UPF0560: Uncharacteri 30.5 54 0.0012 42.0 4.3 23 128-150 280-302 (807)
143 KOG4302 Microtubule-associated 30.5 3.2E+02 0.007 34.8 10.8 44 918-961 45-88 (660)
144 PF12825 DUF3818: Domain of un 30.4 5.9E+02 0.013 30.0 12.4 41 783-835 65-105 (341)
145 PF06305 DUF1049: Protein of u 30.3 59 0.0013 28.4 3.4 30 122-151 22-51 (68)
146 PF15254 CCDC14: Coiled-coil d 30.3 2.4E+02 0.0052 36.4 9.6 54 855-909 354-413 (861)
147 PF06013 WXG100: Proteins of 1 30.1 3.7E+02 0.008 23.4 10.8 26 917-942 45-70 (86)
148 PF05377 FlaC_arch: Flagella a 30.1 3.1E+02 0.0068 24.2 7.5 19 887-905 4-22 (55)
149 PRK04654 sec-independent trans 29.8 4.1E+02 0.0089 29.3 10.1 68 888-961 32-99 (214)
150 PF14654 Epiglycanin_C: Mucin, 29.7 62 0.0013 31.4 3.6 18 128-146 27-44 (106)
151 PF15120 DUF4561: Domain of un 29.6 1.8E+02 0.0038 31.1 7.1 84 887-992 3-86 (171)
152 PRK04863 mukB cell division pr 29.6 1.8E+03 0.039 31.2 18.9 37 755-791 230-266 (1486)
153 cd07591 BAR_Rvs161p The Bin/Am 29.5 7.9E+02 0.017 27.0 13.8 28 929-956 146-173 (224)
154 PHA03246 large tegument protei 29.4 2.2E+03 0.047 32.1 23.3 79 874-961 1730-1811(3095)
155 cd07663 BAR_SNX5 The Bin/Amphi 29.4 4.5E+02 0.0098 29.1 10.6 71 918-988 21-98 (218)
156 PF05667 DUF812: Protein of un 29.2 3.2E+02 0.0069 34.5 10.6 75 919-994 393-468 (594)
157 PF10147 CR6_interact: Growth 29.2 8.3E+02 0.018 27.1 13.2 66 923-991 131-200 (217)
158 cd07639 BAR_ACAP1 The Bin/Amph 28.7 3.6E+02 0.0078 29.4 9.6 46 885-930 4-51 (200)
159 PF07439 DUF1515: Protein of u 28.6 3.7E+02 0.0081 26.8 8.6 20 888-907 6-25 (112)
160 PF05084 GRA6: Granule antigen 28.6 59 0.0013 34.1 3.5 24 126-149 154-177 (215)
161 PF15003 HAUS2: HAUS augmin-li 28.6 9.1E+02 0.02 27.8 12.9 41 947-987 110-154 (277)
162 COG4980 GvpP Gas vesicle prote 28.5 2.5E+02 0.0055 28.1 7.7 70 885-954 41-110 (115)
163 PF06008 Laminin_I: Laminin Do 28.5 7.9E+02 0.017 27.4 12.7 73 881-959 43-115 (264)
164 PF10376 Mei5: Double-strand r 28.4 1.9E+02 0.0042 31.9 7.6 44 918-961 169-215 (221)
165 PF03114 BAR: BAR domain; Int 28.3 4.7E+02 0.01 27.1 10.4 24 970-993 118-141 (229)
166 PF11770 GAPT: GRB2-binding ad 28.2 28 0.00062 36.0 1.1 28 119-148 9-37 (158)
167 cd07617 BAR_Endophilin_B2 The 27.9 5.3E+02 0.011 28.7 10.8 14 881-894 145-158 (220)
168 COG1382 GimC Prefoldin, chaper 27.8 6.2E+02 0.013 25.6 10.2 37 918-954 68-104 (119)
169 PF14500 MMS19_N: Dos2-interac 27.7 91 0.002 35.0 5.1 57 919-983 100-156 (262)
170 KOG4672 Uncharacterized conser 27.4 1.5E+02 0.0034 35.3 6.9 6 270-275 217-222 (487)
171 KOG4849 mRNA cleavage factor I 27.2 2.8E+02 0.0061 32.6 8.7 17 619-635 355-371 (498)
172 PF00558 Vpu: Vpu protein; In 27.1 67 0.0015 30.2 3.3 17 136-152 22-38 (81)
173 KOG2264 Exostosin EXT1L [Signa 27.0 2.3E+02 0.005 35.2 8.4 35 922-956 116-150 (907)
174 PHA03286 envelope glycoprotein 27.0 67 0.0015 38.7 4.0 17 138-154 409-425 (492)
175 PRK14156 heat shock protein Gr 26.8 3.5E+02 0.0075 29.0 8.9 76 693-774 19-97 (177)
176 cd07616 BAR_Endophilin_B1 The 26.7 9.3E+02 0.02 26.9 13.8 55 932-993 168-226 (229)
177 KOG0810 SNARE protein Syntaxin 26.6 6.3E+02 0.014 29.3 11.5 37 918-954 73-109 (297)
178 KOG2417 Predicted G-protein co 26.5 2.7E+02 0.0059 32.9 8.5 26 969-994 300-325 (462)
179 COG3889 Predicted solute bindi 26.4 58 0.0013 41.5 3.6 14 134-147 858-871 (872)
180 PF08580 KAR9: Yeast cortical 26.4 5.9E+02 0.013 32.8 12.3 34 967-1000 123-157 (683)
181 KOG3208 SNARE protein GS28 [In 26.3 1.1E+02 0.0023 33.8 5.1 74 932-1006 56-129 (231)
182 PRK09039 hypothetical protein; 26.3 3.3E+02 0.0071 31.9 9.5 27 884-910 138-164 (343)
183 KOG2008 BTK-associated SH3-dom 26.3 8.4E+02 0.018 28.5 12.1 72 874-945 74-145 (426)
184 PF05600 DUF773: Protein of un 26.2 3.5E+02 0.0077 33.4 10.1 16 769-784 43-58 (507)
185 cd07592 BAR_Endophilin_A The B 26.1 2.2E+02 0.0048 31.5 7.6 28 932-959 155-182 (223)
186 PF06809 NPDC1: Neural prolife 26.0 84 0.0018 36.4 4.4 31 120-151 199-229 (341)
187 PF12252 SidE: Dot/Icm substra 26.0 1.5E+03 0.032 30.8 15.3 19 694-712 986-1004(1439)
188 cd07592 BAR_Endophilin_A The B 26.0 7.5E+02 0.016 27.4 11.6 24 752-775 4-27 (223)
189 KOG2196 Nuclear porin [Nuclear 25.7 7.6E+02 0.016 27.9 11.4 61 886-946 181-245 (254)
190 cd07307 BAR The Bin/Amphiphysi 25.4 6.8E+02 0.015 24.9 18.4 57 930-992 131-187 (194)
191 PRK09546 zntB zinc transporter 25.3 2.7E+02 0.0059 31.8 8.6 13 825-837 142-154 (324)
192 KOG1991 Nuclear transport rece 25.0 6.7E+02 0.014 33.5 12.3 66 761-832 436-509 (1010)
193 PF10168 Nup88: Nuclear pore c 24.9 8.1E+02 0.018 31.7 13.2 52 930-982 596-648 (717)
194 PHA03282 envelope glycoprotein 24.9 91 0.002 37.8 4.6 31 120-150 409-439 (540)
195 KOG1830 Wiskott Aldrich syndro 24.8 2.3E+02 0.005 34.1 7.6 15 229-248 124-138 (518)
196 cd07590 BAR_Bin3 The Bin/Amphi 24.8 8.8E+02 0.019 26.9 11.9 66 929-994 147-213 (225)
197 PF09789 DUF2353: Uncharacteri 24.8 1.2E+03 0.026 27.4 14.9 35 741-775 5-43 (319)
198 PF10458 Val_tRNA-synt_C: Valy 24.6 3.2E+02 0.0068 24.3 7.0 22 888-909 2-23 (66)
199 cd07604 BAR_ASAPs The Bin/Amph 24.6 9.7E+02 0.021 26.4 12.5 189 750-989 4-215 (215)
200 PHA03281 envelope glycoprotein 24.4 94 0.002 38.3 4.6 10 264-273 612-621 (642)
201 KOG1451 Oligophrenin-1 and rel 24.4 1.6E+03 0.034 28.7 17.3 39 730-774 8-46 (812)
202 PF08807 DUF1798: Bacterial do 24.3 7.1E+02 0.015 24.7 10.1 28 918-945 25-52 (111)
203 PRK00523 hypothetical protein; 24.3 1E+02 0.0022 28.4 3.8 26 122-147 4-29 (72)
204 KOG2196 Nuclear porin [Nuclear 24.3 6.3E+02 0.014 28.5 10.4 25 934-958 178-202 (254)
205 cd07651 F-BAR_PombeCdc15_like 24.0 2.6E+02 0.0056 30.6 7.7 66 922-987 152-225 (236)
206 PRK13802 bifunctional indole-3 23.9 5.9E+02 0.013 32.9 11.6 142 655-798 141-327 (695)
207 KOG0018 Structural maintenance 23.8 1.8E+03 0.04 29.9 15.8 65 885-953 776-840 (1141)
208 PRK15362 pathogenicity island 23.6 3.5E+02 0.0076 32.9 8.9 63 882-957 395-458 (473)
209 PF07423 DUF1510: Protein of u 23.5 55 0.0012 36.0 2.4 27 116-142 10-36 (217)
210 KOG1853 LIS1-interacting prote 23.5 8.6E+02 0.019 27.7 11.2 22 885-906 54-75 (333)
211 PF07010 Endomucin: Endomucin; 23.5 1.1E+02 0.0024 33.9 4.5 33 116-148 185-217 (259)
212 PF08359 TetR_C_4: YsiA-like p 23.4 1.8E+02 0.004 28.2 5.9 9 925-933 5-13 (133)
213 PF03961 DUF342: Protein of un 23.4 4.3E+02 0.0093 31.9 10.0 66 887-952 338-407 (451)
214 cd07618 BAR_Rich1 The Bin/Amph 23.2 8.7E+02 0.019 27.4 11.5 10 787-796 66-75 (246)
215 smart00806 AIP3 Actin interact 23.1 1.1E+03 0.024 28.7 12.9 27 918-944 294-320 (426)
216 COG1340 Uncharacterized archae 23.0 6.7E+02 0.014 29.1 10.7 39 867-905 140-180 (294)
217 cd07599 BAR_Rvs167p The Bin/Am 23.0 9.7E+02 0.021 25.8 12.1 11 947-957 99-109 (216)
218 KOG2140 Uncharacterized conser 23.0 1.3E+03 0.029 29.0 13.5 149 653-838 439-593 (739)
219 PF07431 DUF1512: Protein of u 23.0 2.6E+02 0.0056 33.0 7.6 41 944-986 59-99 (355)
220 KOG4848 Extracellular matrix-a 22.8 1E+03 0.022 26.1 12.7 38 923-960 142-183 (225)
221 PHA02562 46 endonuclease subun 22.8 9.7E+02 0.021 29.3 13.1 17 929-945 257-273 (562)
222 KOG4500 Rho/Rac GTPase guanine 22.7 54 0.0012 39.4 2.2 61 772-834 321-385 (604)
223 PF05377 FlaC_arch: Flagella a 22.6 3.7E+02 0.0079 23.8 6.6 26 932-957 19-44 (55)
224 PF10481 CENP-F_N: Cenp-F N-te 22.6 1.2E+03 0.026 26.9 13.2 35 923-957 98-132 (307)
225 PF05642 Sporozoite_P67: Sporo 22.6 1.6E+02 0.0035 36.6 6.1 39 960-998 442-480 (727)
226 COG0249 MutS Mismatch repair A 22.3 1.9E+03 0.042 29.1 18.8 29 747-775 423-451 (843)
227 KOG4603 TBP-1 interacting prot 22.3 1E+03 0.022 25.7 11.2 99 884-999 80-180 (201)
228 TIGR01010 BexC_CtrB_KpsE polys 22.3 7.4E+02 0.016 28.8 11.4 69 884-960 171-240 (362)
229 PF14942 Muted: Organelle biog 22.2 5.3E+02 0.012 26.8 9.0 72 884-958 67-139 (145)
230 PRK14154 heat shock protein Gr 22.1 5.4E+02 0.012 28.3 9.5 14 977-990 131-144 (208)
231 cd07653 F-BAR_CIP4-like The F- 21.9 1.1E+03 0.023 25.9 13.0 14 979-992 167-180 (251)
232 PRK15396 murein lipoprotein; P 21.6 4E+02 0.0086 25.0 7.1 24 884-907 26-49 (78)
233 PF03993 DUF349: Domain of Unk 21.5 5.4E+02 0.012 22.7 8.0 23 972-994 52-74 (77)
234 PRK10884 SH3 domain-containing 21.5 5.5E+02 0.012 28.1 9.4 20 927-946 146-165 (206)
235 cd07638 BAR_ACAP2 The Bin/Amph 21.5 6.3E+02 0.014 27.6 9.8 95 882-1004 1-95 (200)
236 KOG0260 RNA polymerase II, lar 21.5 1.7E+03 0.036 30.8 14.7 10 203-212 1398-1407(1605)
237 cd07667 BAR_SNX30 The Bin/Amph 21.5 6.9E+02 0.015 28.1 10.3 151 774-956 4-168 (240)
238 PF11694 DUF3290: Protein of u 21.5 1E+02 0.0022 32.0 3.7 19 133-151 27-45 (149)
239 PRK01844 hypothetical protein; 21.5 1.2E+02 0.0026 28.0 3.7 23 125-147 6-28 (72)
240 PF15330 SIT: SHP2-interacting 21.4 97 0.0021 30.5 3.3 20 132-151 10-29 (107)
241 PHA00728 hypothetical protein 21.3 2.2E+02 0.0048 28.7 5.7 24 884-907 6-29 (151)
242 TIGR00996 Mtu_fam_mce virulenc 21.1 7E+02 0.015 27.9 10.6 68 920-991 213-280 (291)
243 PF09763 Sec3_C: Exocyst compl 21.0 1.8E+03 0.039 28.2 17.3 18 918-935 164-181 (701)
244 KOG4818 Lysosomal-associated m 21.0 57 0.0012 38.2 1.9 32 118-150 325-356 (362)
245 PF12806 Acyl-CoA_dh_C: Acetyl 20.9 3.2E+02 0.0068 27.1 7.0 59 921-982 2-64 (130)
246 PF05384 DegS: Sensor protein 20.9 8.8E+02 0.019 25.6 10.4 79 885-996 22-100 (159)
247 TIGR03185 DNA_S_dndD DNA sulfu 20.7 5.3E+02 0.012 32.6 10.5 26 931-959 266-291 (650)
248 COG2317 Zn-dependent carboxype 20.7 5.4E+02 0.012 31.6 9.8 22 967-988 168-189 (497)
249 COG4942 Membrane-bound metallo 20.6 1.6E+03 0.034 27.4 14.6 44 751-794 83-127 (420)
250 COG3763 Uncharacterized protei 20.5 1.3E+02 0.0028 27.7 3.6 25 123-147 4-28 (71)
251 PRK07021 fliL flagellar basal 20.5 1.1E+02 0.0024 31.8 3.8 15 117-131 14-28 (162)
252 PF09177 Syntaxin-6_N: Syntaxi 20.4 3.5E+02 0.0076 25.6 6.9 54 887-940 43-97 (97)
253 KOG2057 Predicted equilibrativ 20.4 5.4E+02 0.012 30.1 9.2 112 710-836 25-139 (499)
254 PF11980 DUF3481: Domain of un 20.2 1.3E+02 0.0028 28.6 3.6 26 124-149 20-45 (87)
255 cd07664 BAR_SNX2 The Bin/Amphi 20.2 1.2E+03 0.026 25.9 14.5 66 924-995 163-228 (234)
256 KOG0963 Transcription factor/C 20.2 8.5E+02 0.018 30.9 11.5 69 921-994 60-128 (629)
257 KOG3771 Amphiphysin [Intracell 20.0 3E+02 0.0065 33.6 7.5 14 918-931 67-80 (460)
No 1
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=3.9e-69 Score=621.63 Aligned_cols=371 Identities=40% Similarity=0.617 Sum_probs=335.1
Q ss_pred cCCCcccccccccccCCCCcccccccccccccCCHHHHHHHhhccCCCCCCCCC--CCCC-CCCCCCCCccccChhHHHH
Q 001663 589 LKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQT--TPRT-VLPTPNSENRVLDPKKSQN 665 (1035)
Q Consensus 589 pK~KLK~LhW~KI~~~~~k~TIW~~l~~~~~~LD~~~LE~LF~~k~~~~k~K~~--t~r~-v~~k~~q~isVLD~KRAQN 665 (1035)
|++|||+|||+||...++++|||+++++.. ++|+++||++|+.+......+.. ..+. ...+..++++|||+||+||
T Consensus 6 P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~krs~n 84 (432)
T smart00498 6 PKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKRSQN 84 (432)
T ss_pred CCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhHHhh
Confidence 789999999999999989999999999865 79999999999987654332221 1111 1233457799999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhhcccccCCChHHHHHHHHhCcccHHHHHH
Q 001663 666 IAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVD 745 (1035)
Q Consensus 666 IsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lkey~gd~p~~L~~aEqFll~L~~IP~~~~RL~ 745 (1035)
|+|+|++|+++.++|++||+.||...|+.|.|+.|++++||.||+++|++|.|+++..|+++|||+++|++||+|.+||+
T Consensus 85 i~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~Rl~ 164 (432)
T smart00498 85 LAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEERLN 164 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998867899999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccccCCCCCcc
Q 001663 746 AMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTT 825 (1035)
Q Consensus 746 allfk~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs~D~k~T 825 (1035)
||+|+.+|++.+++|+..|++|..||++|++|+.|++||++||++|||||+|+.||+|+||+|++|.||.|||++|+++|
T Consensus 165 ~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k~t 244 (432)
T smart00498 165 ALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADNKTT 244 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 001663 826 LLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEV 905 (1035)
Q Consensus 826 LLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~EL~~VkkAAkVdle~L~~dv~kLekgL~kI~ee 905 (1035)
||||||+.|.+++ +.+.+|.+||.+|..|++++ +.|..++++|+++++.++..
T Consensus 245 LLhylv~~i~~~~--------------------------p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~ 297 (432)
T smart00498 245 LLHFLVKIIRKKY--------------------------PDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETD 297 (432)
T ss_pred HHHHHHHHHHHhC--------------------------hhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999887653 23567889999999999999 99999999999999999865
Q ss_pred HHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHH
Q 001663 906 VQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRV 985 (1035)
Q Consensus 906 lq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka 985 (1035)
+..... .....|+|.++|..|+..|+.+++.|+..+.++.+.|+++++||||++.+ ..+.+||.+|.+|+..|.+|
T Consensus 298 ~~~l~~--~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~efF~~f~~F~~~f~ka 373 (432)
T smart00498 298 LGGLSD--PENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD--TSPEEFFKDFNEFLKEFSKA 373 (432)
T ss_pred HHhcCC--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHHHHH
Confidence 543322 12335899999999999999999999999999999999999999999876 46789999999999999999
Q ss_pred HHHHHH
Q 001663 986 CKEVGM 991 (1035)
Q Consensus 986 ~kEv~k 991 (1035)
++|+.+
T Consensus 374 ~~en~~ 379 (432)
T smart00498 374 AEENIK 379 (432)
T ss_pred HHHHHH
Confidence 998853
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.6e-65 Score=586.61 Aligned_cols=385 Identities=26% Similarity=0.397 Sum_probs=341.8
Q ss_pred CCCCCCCccch-hhhcccCCCcccccccccccCC-CCcccccccccccccCC--HHHHHHHhhccCCCCCCCCC--CCCC
Q 001663 573 ELPPSSKTEES-VEEEALKPKLKPLHWDKVRASS-DREMVWDHLRSSSFKLN--EEMIETLFIVNTPSSKPSQT--TPRT 646 (1035)
Q Consensus 573 ~lP~~~~~~~e-~~e~~pK~KLK~LhW~KI~~~~-~k~TIW~~l~~~~~~LD--~~~LE~LF~~k~~~~k~K~~--t~r~ 646 (1035)
-+|.|+++++. +. ...||+++|.||.... .++.+|-.++++.+.-| +++|+..|+++....+..+. .+++
T Consensus 609 vlP~gLkpKK~~k~----e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt 684 (1102)
T KOG1924|consen 609 VLPFGLKPKKVYKP----EVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKT 684 (1102)
T ss_pred cCCCCCCccccCCC----CCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccc
Confidence 58888886432 33 3479999999998765 46899999998876533 57888999998765443322 2333
Q ss_pred CCCCCCCCccccChhHHHHHHHHHhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhhcccccCCCh
Q 001663 647 VLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGP 726 (1035)
Q Consensus 647 v~~k~~q~isVLD~KRAQNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lkey~gd~p~~L~~ 726 (1035)
..+++.++..|||.|.+||++|+|+.|+++++||+.+|+++|+++|+...|++|++.+|..|-+.+|.+++... +.|.+
T Consensus 685 ~~kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaey-e~l~e 763 (1102)
T KOG1924|consen 685 GTKKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEY-EDLPE 763 (1102)
T ss_pred hhhhhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-cCCCC
Confidence 34566788999999999999999999999999999999999999999999999999999999999999997665 78999
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccccCCCCCceeee
Q 001663 727 AEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAF 806 (1035)
Q Consensus 727 aEqFll~L~~IP~~~~RL~allfk~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GF 806 (1035)
.|||...|.+|+++.-||.+++||.+|.+.+++|++.|..+.+||++||+|+.|.+||++||.+|||||+|+...+|+||
T Consensus 764 ~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF 843 (1102)
T KOG1924|consen 764 PEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGF 843 (1102)
T ss_pred HHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCccHHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchhhhhHHHhhcCCHH
Q 001663 807 KLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSD 886 (1035)
Q Consensus 807 kLsSL~KL~dtKs~D~k~TLLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~EL~~VkkAAkVdle 886 (1035)
.++.|.||.|||+.|+|+||||||++.+.++ .|.+..|.+||.+|.+|++|+.+
T Consensus 844 ~is~L~kL~dTKsaDqk~TLLHfLae~~e~k--------------------------ypd~l~F~ddl~hv~kaSrvnad 897 (1102)
T KOG1924|consen 844 NISFLCKLRDTKSADQKTTLLHFLAEICEEK--------------------------YPDILKFPDDLEHVEKASRVNAD 897 (1102)
T ss_pred chHHHHhhccccccchhhHHHHHHHHHHHHh--------------------------ChhhhcchhhHHHHHhhccccHH
Confidence 9999999999999999999999999754332 23466788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcC
Q 001663 887 VLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEA 966 (1035)
Q Consensus 887 ~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~ 966 (1035)
.|...+..++..+++++..++.....+. ..|+|.++|..|.++|.+++..|.....+|++.|+++.+||.-|++|..+
T Consensus 898 ~ikK~~~~m~~~ik~Le~dlk~~~~~~~--e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysm 975 (1102)
T KOG1924|consen 898 EIKKNLQQMENQIKKLERDLKNFKIAGN--EHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSM 975 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCc--chhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcH
Confidence 9999999999999999999987764443 36999999999999999999999999999999999999999999999755
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHh
Q 001663 967 HPFRIFMVVRDFLTVLDRVCKEVGMI 992 (1035)
Q Consensus 967 ~P~~fF~il~dFl~~~dka~kEv~k~ 992 (1035)
++||+.+++|-+.|..|.+|+.+.
T Consensus 976 --EEFFaDi~tFrnaf~ea~~en~kr 999 (1102)
T KOG1924|consen 976 --EEFFADIRTFRNAFLEAVAENEKR 999 (1102)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999998887644
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=8.5e-66 Score=581.54 Aligned_cols=362 Identities=36% Similarity=0.594 Sum_probs=310.7
Q ss_pred cCCCcccccccccccCCCCccccccccccc--ccCCHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHH
Q 001663 589 LKPKLKPLHWDKVRASSDREMVWDHLRSSS--FKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKKSQNI 666 (1035)
Q Consensus 589 pK~KLK~LhW~KI~~~~~k~TIW~~l~~~~--~~LD~~~LE~LF~~k~~~~k~K~~t~r~v~~k~~q~isVLD~KRAQNI 666 (1035)
++.|||+|||++|...+.++|||++++..+ ..+|+++||++|+.+....+.+. ......++.+.++|||+||+|||
T Consensus 7 p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~--~~~~~~~~~~~~~iLd~kr~~ni 84 (370)
T PF02181_consen 7 PKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKK--KQASKKKKKKKISILDPKRSQNI 84 (370)
T ss_dssp -SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH------HCCCCTTCCESSS-HHHHHHH
T ss_pred CCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccc--cccccccccccccccchHHHHHH
Confidence 788999999999999999999999998765 47899999999998775422111 01112344577999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhhcccccCCChHHHHHHHHhCcccHHHHHHH
Q 001663 667 AILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDA 746 (1035)
Q Consensus 667 sI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lkey~gd~p~~L~~aEqFll~L~~IP~~~~RL~a 746 (1035)
+|+|++|++++++|++||+.||...|+.|.|+.|++++||.||+++|++|.++ +..|+++|+|+++|++||++++||+|
T Consensus 85 ~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~-~~~L~~~E~f~~~l~~ip~~~~rl~~ 163 (370)
T PF02181_consen 85 GIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGD-PATLGPAEQFLLELSKIPRLKERLEA 163 (370)
T ss_dssp HHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTS-GTTB-HHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhcc-HHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 58999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccccCCCCCccH
Q 001663 747 MLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTL 826 (1035)
Q Consensus 747 llfk~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs~D~k~TL 826 (1035)
|+|+.+|+++++++...|+.|.+||++|++|+.|++||++||++|||||+|+++|+|.||+|++|.||.+||++|+++||
T Consensus 164 ~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~tL 243 (370)
T PF02181_consen 164 LLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNKTTL 243 (370)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSBH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 001663 827 LHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVV 906 (1035)
Q Consensus 827 LhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~EL~~VkkAAkVdle~L~~dv~kLekgL~kI~eel 906 (1035)
|||||+.+.+. .+.+..|.+||..|..|+++++++|..++.+|+++++.++.++
T Consensus 244 L~~l~~~~~~~--------------------------~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l 297 (370)
T PF02181_consen 244 LHYLVKIVEEK--------------------------FPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKEL 297 (370)
T ss_dssp HHHHHHHHHTT--------------------------SGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------------------------ChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876432 2346678899999999999999999999999999999999999
Q ss_pred HHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHH
Q 001663 907 QLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLD 983 (1035)
Q Consensus 907 q~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~d 983 (1035)
+.... ..+..+.|.+.|..|++.|+.++..|++.+.++++.|++++.||||++++ ..+++||++|.+|++.|+
T Consensus 298 ~~~~~--~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~~ff~~l~~F~~~fk 370 (370)
T PF02181_consen 298 EAIEK--DEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKK--MSPEEFFKILSQFIDMFK 370 (370)
T ss_dssp HHCCT--TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTC--CHHHHHHHHHHHHHHHHH
T ss_pred Hhccc--cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHhC
Confidence 87643 23457999999999999999999999999999999999999999999874 568899999999999985
No 4
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.1e-51 Score=507.84 Aligned_cols=406 Identities=42% Similarity=0.620 Sum_probs=361.0
Q ss_pred cccCCCcccccccccccCCCCcccccccccccccCCH---HHHHHHhhccCCCCCCCC--CCCCCCCCCCCCCccccChh
Q 001663 587 EALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNE---EMIETLFIVNTPSSKPSQ--TTPRTVLPTPNSENRVLDPK 661 (1035)
Q Consensus 587 ~~pK~KLK~LhW~KI~~~~~k~TIW~~l~~~~~~LD~---~~LE~LF~~k~~~~k~K~--~t~r~v~~k~~q~isVLD~K 661 (1035)
.+++.+||++||+++.......++|+.+....+..|. +++|.+|........... ...........+.+.|+|++
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r 469 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPR 469 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCC
Confidence 4478999999999999999999999999988877776 899999987654332221 11111122233678999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhhcccccCCChHHHHHHH-HhCcccH
Q 001663 662 KSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKA-VLDVPFA 740 (1035)
Q Consensus 662 RAQNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lkey~gd~p~~L~~aEqFll~-L~~IP~~ 740 (1035)
+.|||+|+|..+++..+++.++|+.+|+..+..++|+.|.+++|+++|..+++.|.++. ..|+.+|+|+.+ +..|+++
T Consensus 470 ~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~-~~l~~~e~~~~~~~~~ip~~ 548 (833)
T KOG1922|consen 470 RPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDP-LTLGDAEKFFFEELSGIPEF 548 (833)
T ss_pred CccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCC-CccchHHHHHHHHhhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999886 799999998887 5679999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccccCC
Q 001663 741 FKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGA 820 (1035)
Q Consensus 741 ~~RL~allfk~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs~ 820 (1035)
+.|+++++|+..|..++.++.+.+.++..||++++++++|.+++++||..|||||.|+.||+|+||+|+.|.||.|+|+.
T Consensus 549 ~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~ 628 (833)
T KOG1922|consen 549 EERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSS 628 (833)
T ss_pred HHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchhhhhHHHhhcCCHHHHHHHHHHHHHHHH
Q 001663 821 DGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLG 900 (1035)
Q Consensus 821 D~k~TLLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~EL~~VkkAAkVdle~L~~dv~kLekgL~ 900 (1035)
++++++||+++.++++.++.+.. . ++.++++++++.|.+|..||.+|++|++|+++++.+++.+|.++++
T Consensus 629 ~~~~~~l~~~~~e~~~~~~~r~~---------~-~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~ 698 (833)
T KOG1922|consen 629 DGKTTLLHFVVPEVVRSEGKRSV---------I-DVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLE 698 (833)
T ss_pred cccchhhhhhHHHHHHhhccccc---------h-hhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHH
Confidence 99999999999999998875421 1 4558899999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHH
Q 001663 901 NIGEVVQ-LNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFL 979 (1035)
Q Consensus 901 kI~eelq-~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl 979 (1035)
++.+.++ ..+... ....+.|..+|..|+..|+.++..|..++..+...++++++|||++++ ++.++.++|.++++|+
T Consensus 699 ~~~~~l~~~~~~~~-~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~-~~~~~~~~f~~~r~fl 776 (833)
T KOG1922|consen 699 KVKRELPTASKNES-LPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPK-EEITPEQVFSILRDFL 776 (833)
T ss_pred HHHHHhhhhhcCCC-CCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-ccCCHHHHHHHHHHHH
Confidence 9999986 322111 235789999999999999999999999999999999999999999998 6789999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCC
Q 001663 980 TVLDRVCKEVGMINERTIISNAHKFP 1005 (1035)
Q Consensus 980 ~~~dka~kEv~k~~eR~~~~~a~~f~ 1005 (1035)
..+++||+|++++++|+.+.++...+
T Consensus 777 ~~~~~~~~e~~~~~~k~~~~~~~~~~ 802 (833)
T KOG1922|consen 777 RTFDKAHEENKKAEEKEKTYEAEEKR 802 (833)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccc
Confidence 99999999999999998776544333
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.3e-49 Score=460.01 Aligned_cols=367 Identities=23% Similarity=0.353 Sum_probs=322.2
Q ss_pred hhhcccCCCcccccccccccCCCCcccccccccccc--cCCHHHHHHHhhccCCCCCCCC--CCCCCCCCCCCCCccccC
Q 001663 584 VEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSF--KLNEEMIETLFIVNTPSSKPSQ--TTPRTVLPTPNSENRVLD 659 (1035)
Q Consensus 584 ~~e~~pK~KLK~LhW~KI~~~~~k~TIW~~l~~~~~--~LD~~~LE~LF~~k~~~~k~K~--~t~r~v~~k~~q~isVLD 659 (1035)
+..+..|.|+-.|+|..+...++++|||.++++..+ ++|++++|+.|.....+...-. .++.....+..++.+++|
T Consensus 362 k~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk~tLle 441 (830)
T KOG1923|consen 362 KKPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQKRTLLE 441 (830)
T ss_pred cCCCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhhhhHHH
Confidence 344446778899999999999999999999987655 5899999999998332211100 011112234467899999
Q ss_pred hhHHHHHHHHHhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhhccc-c-cCCChHHHHHHHHhCc
Q 001663 660 PKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDES-L-TKLGPAEKFLKAVLDV 737 (1035)
Q Consensus 660 ~KRAQNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lkey~gd~-p-~~L~~aEqFll~L~~I 737 (1035)
.+|.+|++|.++ .++..++|+.||..+|...|..+.++.|.+++||++|.+.+++|..+. + ..|.+.++|++.+..|
T Consensus 442 ~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~lskI 520 (830)
T KOG1923|consen 442 QRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLSKI 520 (830)
T ss_pred HHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhhhh
Confidence 999999999999 899999999999999999999999999999999999999999997542 2 5799999999999999
Q ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccc
Q 001663 738 PFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDV 817 (1035)
Q Consensus 738 P~~~~RL~allfk~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dt 817 (1035)
.++++|+..|.|+.+|.+.+.-|.+++..++.|+..+++|++|+.||++||++|||||.+. ||.|+||+|.+|.-|.++
T Consensus 521 Erle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~k-Rg~ayGFklqslD~ll~t 599 (830)
T KOG1923|consen 521 ERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSSK-RGAAYGFKLQSLDSLLDT 599 (830)
T ss_pred hhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCcc-cccccceeccccHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999874 799999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchhhhhHHHhhcCCHHHHHHHHHHHHH
Q 001663 818 KGADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSR 897 (1035)
Q Consensus 818 Ks~D~k~TLLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~EL~~VkkAAkVdle~L~~dv~kLek 897 (1035)
|++|.++|||||++-.+..+ |+.+..|.+||.-|++|+.+++|.+..||.+|.+
T Consensus 600 kStDr~~tLlh~iv~~i~ek--------------------------lp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~ 653 (830)
T KOG1923|consen 600 KSTDRSMTLLHYIVLTIAEK--------------------------LPALQLFFSELDFVEKATAVQLESVLADVKELNA 653 (830)
T ss_pred cCCccceeeeehhhHHHHHh--------------------------hHHHHhhHHHhhccchhhhhhhhccchhHHHHHh
Confidence 99999999999999765332 4557788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHH
Q 001663 898 GLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRD 977 (1035)
Q Consensus 898 gL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~d 977 (1035)
|+...+++..... .+ ..|+.|++..+.++++|+++++.+.+.|+++++||||.++. ..|..||..+..
T Consensus 654 g~~l~~kE~e~~~-------~~---~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~--tppt~ff~~f~~ 721 (830)
T KOG1923|consen 654 GMTLAEKETEREG-------LD---VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKT--TPPTVFFQLFVR 721 (830)
T ss_pred HHHHHHHHHhhhc-------cc---hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCC--CCCCccHHHHHH
Confidence 9999988876432 12 78999999999999999999999999999999999999876 356679999999
Q ss_pred HHHHHHHHHHHHH
Q 001663 978 FLTVLDRVCKEVG 990 (1035)
Q Consensus 978 Fl~~~dka~kEv~ 990 (1035)
|+..|+++..|++
T Consensus 722 F~~~~k~~~~ene 734 (830)
T KOG1923|consen 722 FVRAYKMARQENE 734 (830)
T ss_pred HHHHHHhhhhhhh
Confidence 9999999987775
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3e-48 Score=431.21 Aligned_cols=398 Identities=23% Similarity=0.329 Sum_probs=335.8
Q ss_pred cCCCcccccccccccC--------CCCcccccccccccccCCHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccccCh
Q 001663 589 LKPKLKPLHWDKVRAS--------SDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDP 660 (1035)
Q Consensus 589 pK~KLK~LhW~KI~~~--------~~k~TIW~~l~~~~~~LD~~~LE~LF~~k~~~~k~K~~t~r~v~~k~~q~isVLD~ 660 (1035)
.++|+.+|||..+... ...+|+|+.++... +|.+.||.||..+..+..+ .+++...+.+..+|||.
T Consensus 280 ~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~--~D~~r~~~LFEsr~~~~~P----~KK~~E~r~~~~tVL~~ 353 (817)
T KOG1925|consen 280 TKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVS--VDTARLEHLFESRAKEVLP----SKKAGEGRRTMTTVLDP 353 (817)
T ss_pred ccCceeEEEeecceecCCCCCccccccchhhhccCcce--ecHHHHHHHHHHhhhhhcc----chhhcccceeeeeecCc
Confidence 4667788999988643 24579999998653 7999999999987643221 11122334467899999
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhhcccc-cCCChHHHHHHHHhCccc
Q 001663 661 KKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESL-TKLGPAEKFLKAVLDVPF 739 (1035)
Q Consensus 661 KRAQNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lkey~gd~p-~~L~~aEqFll~L~~IP~ 739 (1035)
||.|.|.|.|.+|. ++.-|..||+++|+-.++.|.||.|++|+|++||+++|+...-.+| ..||.||||++.|..|+.
T Consensus 354 KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSsI~~ 432 (817)
T KOG1925|consen 354 KRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSSIGG 432 (817)
T ss_pred ccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhHH
Confidence 99999999999996 6788999999999999999999999999999999999988776655 589999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccccC
Q 001663 740 AFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 819 (1035)
Q Consensus 740 ~~~RL~allfk~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs 819 (1035)
+.+||++|.|+..|+..-.+|.+.|-.++.|+++|.+++.|+-+|.++|+||||||+. +++||.|++|.|..++|+
T Consensus 433 L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLeKvsEVKD 508 (817)
T KOG1925|consen 433 LAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLEKVSEVKD 508 (817)
T ss_pred HHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhhhchhhcc
Confidence 9999999999999999999999999999999999999999999999999999999974 789999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchhhhhHHHhhcCCHHHHHHHHHHHHHHH
Q 001663 820 ADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGL 899 (1035)
Q Consensus 820 ~D~k~TLLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~EL~~VkkAAkVdle~L~~dv~kLekgL 899 (1035)
+..|.||||+||..+++. |++-.+|+.|+..|.+.|+||+++|...+.+|++++
T Consensus 509 tV~KqsLlhHlc~~vVE~--------------------------FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrC 562 (817)
T KOG1925|consen 509 TVRKQSLLHHLCSLVVET--------------------------FPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRC 562 (817)
T ss_pred hHHHHHHHHHHHHHHHHh--------------------------CCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHh
Confidence 999999999999877653 344568999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCcCCcchhhHHHHHH
Q 001663 900 GNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSA-REEAHPFRIFMVVRDF 978 (1035)
Q Consensus 900 ~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~-kee~~P~~fF~il~dF 978 (1035)
+.-.+.+.... .+|-...+...|..|+++|.++|..|+..+..+.+.|...+-|||..+. ..|.++.+||.+|++|
T Consensus 563 KaSWe~L~~Ia---khe~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EF 639 (817)
T KOG1925|consen 563 KASWESLRSIA---KHELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREF 639 (817)
T ss_pred hHHHHHHHHHH---hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHH
Confidence 99888877653 2344577899999999999999999999999999999999999997654 3457888999999999
Q ss_pred HHHHHHHHH----HHHHh---hhh-----hcccccccCC----CCCCCCCCccccccccCcCCC
Q 001663 979 LTVLDRVCK----EVGMI---NER-----TIISNAHKFP----VPVNPTLPQVFSEIQGRRQCS 1026 (1035)
Q Consensus 979 l~~~dka~k----Ev~k~---~eR-----~~~~~a~~f~----~~~~~~~~~~~~~~~~~~~~~ 1026 (1035)
.-.|...+. .-+|. +|| .||....||. -|++|..|+.+....+-.+.+
T Consensus 640 aLEYRTTRervLQQ~qk~A~~RERNKTRGKmit~~Gkfs~~G~~pA~Ps~p~~~s~G~~A~da~ 703 (817)
T KOG1925|consen 640 ALEYRTTRERVLQQQQKQATYRERNKTRGKMITETGKFSGVGEAPANPSVPVAVSSGPGAGDAD 703 (817)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhhcccccceeeecccccCCCCCCCCcccccccCCCCCCcchh
Confidence 988854333 22211 222 3777778884 588998888877655554433
No 7
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=4e-06 Score=100.46 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=18.7
Q ss_pred Ccccccccccc-----cc--cCCHHHHH--HHhhccCC
Q 001663 607 REMVWDHLRSS-----SF--KLNEEMIE--TLFIVNTP 635 (1035)
Q Consensus 607 k~TIW~~l~~~-----~~--~LD~~~LE--~LF~~k~~ 635 (1035)
+.-=|..+... .| +.+++.+| ++|+.-..
T Consensus 627 rr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~ 664 (1102)
T KOG1924|consen 627 RRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLAL 664 (1102)
T ss_pred ccCCccccCccccCccceeeecchhhccchHHHHHHHH
Confidence 34568877643 34 46788886 68886543
No 8
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=98.04 E-value=2.1e-05 Score=92.47 Aligned_cols=114 Identities=35% Similarity=0.407 Sum_probs=94.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 877 VKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAM-GMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITE 955 (1035)
Q Consensus 877 VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~-~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~e 955 (1035)
...++..+++.|...+.++...++++.+.+...... ..++-...|.+-|..|.+.+++.+..++++..+.+..++++++
T Consensus 318 F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~~~~ 397 (432)
T smart00498 318 FLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKETTE 397 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999988776433221 1122236778888889999999999999999999999999999
Q ss_pred hccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHH
Q 001663 956 YFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVG 990 (1035)
Q Consensus 956 YFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~ 990 (1035)
||++.+.+.+.++..+|.+++||+..+|++|++++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~ 432 (432)
T smart00498 398 YEQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG 432 (432)
T ss_pred hhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence 99987766678899999999999999999999874
No 9
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=96.19 E-value=1.3 Score=56.81 Aligned_cols=142 Identities=13% Similarity=-0.082 Sum_probs=69.2
Q ss_pred CCCCCccCccccccccccCCCCCCCCCCC-----chhHHHHHHHHHHHHHHHHHH-HHHhhhhhhccCCCccccccCCcC
Q 001663 89 PPSPANFASFPANISSLILPRSPEKPKRS-----SQKLLILAFASVSSALVVGGI-LVFFYCRKRRQNGLLYCTADVKSN 162 (1035)
Q Consensus 89 ppsp~~~asfpanis~l~~p~s~~~~~~~-----~~~l~~~ais~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~k~~ 162 (1035)
.....++.+|+++|..++.++.-.. .+. .......+++++.+...++.. ..+..+.+...+....+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (833)
T KOG1922|consen 6 FQAITSTLSLNAGLLTLISSLRLLR-ILKLTLVLSLNNKLKAPSPFLAPPSKLEFFLQHKPPPPPSLESRLSLKSPPESL 84 (833)
T ss_pred ccccccccccccccceeeeeccccc-cccchHHHHHhhhhhccchhhhhhhhcccccccccccCccccccccccCCCccc
Confidence 4556788999999999999965412 111 112234444555554444432 222333333333333444444444
Q ss_pred cccCCCCCCCCccccCCCCCCCCcccccccccc--cccCCCCcceeeecccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001663 163 TTNSNINSNNSSIRIYPPPPANADATRNAHKLR--TNRTSSSSEFLYLGTLVNSRAGIDDSTTDTDSRGDTNCVSPELRP 240 (1035)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~flylgt~~~s~~~~~~~~~~~~~~~~~k~~spel~p 240 (1035)
+.... .+..+.++..+...-. ..... ......+.+++|++++...+. +. ...+..++...+.+..+
T Consensus 85 ~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~ 152 (833)
T KOG1922|consen 85 RVLAL-----SSPSLITEDTNPLKLP--TIPTLVLLMSMCLSEKLLPLQWLLLTRK-LV----ALQGLLFEELAERDRLL 152 (833)
T ss_pred ccccc-----CCcccccCCCcccccc--cccchhhhHHHhhcccccchhhhHHHHH-HH----HHHHHHHHHhcchhhcc
Confidence 44110 0000111100000000 00000 012234789999998888773 21 22466788888888888
Q ss_pred CCC
Q 001663 241 LPP 243 (1035)
Q Consensus 241 lpp 243 (1035)
|++
T Consensus 153 ~~~ 155 (833)
T KOG1922|consen 153 LPN 155 (833)
T ss_pred ccc
Confidence 876
No 10
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=88.83 E-value=0.27 Score=55.73 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 001663 119 QKLLILAFASVSSALVVGGILVFFYCRKRRQN 150 (1035)
Q Consensus 119 ~~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~ 150 (1035)
..+|.|||++.+|+|++|.+++++++|||++.
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 68999999999999999988888887777654
No 11
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=87.70 E-value=0.18 Score=44.67 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=2.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCccccccCC
Q 001663 118 SQKLLILAFASVSSALVVGGILVFFYCRKRRQNGLLYCTADVK 160 (1035)
Q Consensus 118 ~~~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~k 160 (1035)
+..|.++..++|++++.+++++.|+.||-|+++.-++--+++|
T Consensus 8 ~~vlaavIaG~Vvgll~ailLIlf~iyR~rkkdEGSY~l~e~K 50 (64)
T PF01034_consen 8 SEVLAAVIAGGVVGLLFAILLILFLIYRMRKKDEGSYDLDEPK 50 (64)
T ss_dssp -----------------------------S------SS--S--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCC
Confidence 3456667777777777777777788888888776555555544
No 12
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.43 E-value=39 Score=44.56 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHHhhc----CC---CHHHHHHHHHcCCCCCCCHHHHHHHH
Q 001663 659 DPKKSQNIAILLRAL----NV---TIEEVCEALLEGNADTLGTELLESLL 701 (1035)
Q Consensus 659 D~KRAQNIsI~L~kl----kl---s~eeI~~AIl~~D~~~L~~E~Le~Ll 701 (1035)
+.+..+||.+.++-| +- ++++|.+.++.++. .++.|+|+.|.
T Consensus 1469 s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~l-p~tpeqi~~L~ 1517 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALEL-PLTPEQIQQLT 1517 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccC-CCCHHHHHHHH
Confidence 356678888888877 22 35667788888864 57777777664
No 13
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.14 E-value=0.69 Score=46.14 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=5.1
Q ss_pred HHHHhhhhhhccCC
Q 001663 138 ILVFFYCRKRRQNG 151 (1035)
Q Consensus 138 ~~~~~~~~~r~~~~ 151 (1035)
|++++||.||++++
T Consensus 81 Illi~y~irR~~Kk 94 (122)
T PF01102_consen 81 ILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhcc
Confidence 33344444444433
No 14
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.00 E-value=31 Score=45.41 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhccccccCC
Q 001663 780 FLKLLEAVLKTGNRMNVGT 798 (1035)
Q Consensus 780 L~~LL~iILaiGNfLN~gt 798 (1035)
.+++=++|-+|+|||+..+
T Consensus 1470 ~~el~~Li~~v~~Flt~~~ 1488 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQPD 1488 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 3445567888999999654
No 15
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=83.46 E-value=16 Score=44.00 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=14.0
Q ss_pred cCCCcccccccccccCCCCccccccccc
Q 001663 589 LKPKLKPLHWDKVRASSDREMVWDHLRS 616 (1035)
Q Consensus 589 pK~KLK~LhW~KI~~~~~k~TIW~~l~~ 616 (1035)
....+|.+.-..+.....++-+-++|..
T Consensus 477 ~G~ql~~ve~t~~~~~dgR~~LmaqIRq 504 (569)
T KOG3671|consen 477 PGGQLKKVETTALSSGDGRDALMAQIRQ 504 (569)
T ss_pred ccccccceeeccCcCcccHHHHHHHHHh
Confidence 3445555544444433345566666653
No 16
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=82.44 E-value=15 Score=44.20 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=7.6
Q ss_pred hhccCCCccccccCCcCcc
Q 001663 146 KRRQNGLLYCTADVKSNTT 164 (1035)
Q Consensus 146 ~r~~~~~~~~~~~~k~~~~ 164 (1035)
+++-|.-..|.+| -..|+
T Consensus 59 ~~~~~Gal~lVkD-~~~rs 76 (569)
T KOG3671|consen 59 KTGLCGALCLVKD-NAQRS 76 (569)
T ss_pred cccCceeEEEeec-cccce
Confidence 3333333345555 34444
No 17
>PF15102 TMEM154: TMEM154 protein family
Probab=80.10 E-value=0.87 Score=46.59 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=19.7
Q ss_pred ccccccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 001663 97 SFPANISSLILPRSPEKPKRSSQKLLILAFASVSSALVVGGI 138 (1035)
Q Consensus 97 sfpanis~l~~p~s~~~~~~~~~~l~~~ais~~~~~~~~~~~ 138 (1035)
++.||+.+--...+. +-...-.-+|.|+|-+|+.+|+++++
T Consensus 35 ~~ta~~~st~~~~t~-~~~~q~efiLmIlIP~VLLvlLLl~v 75 (146)
T PF15102_consen 35 TLTANINSTETSLTE-EDSSQLEFILMILIPLVLLVLLLLSV 75 (146)
T ss_pred ccccccCcccccccC-CCCCCcceEEEEeHHHHHHHHHHHHH
Confidence 377888766553333 22111121456666655544444443
No 18
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=80.09 E-value=0.22 Score=51.08 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 001663 118 SQKLLILAFASVSSALVVGGILVFFYCRKRRQN 150 (1035)
Q Consensus 118 ~~~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~ 150 (1035)
+++.+-|+|.++++.++++++++||||+||+|.
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhheeEEEecccC
Confidence 445566677777776666666655555555554
No 19
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.73 E-value=37 Score=38.37 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=40.8
Q ss_pred eeeccccccccccccCC--------CCCccHHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchhhh
Q 001663 804 HAFKLDTLLKLVDVKGA--------DGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELS 875 (1035)
Q Consensus 804 ~GFkLsSL~KL~dtKs~--------D~k~TLLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~EL~ 875 (1035)
.+|+++.=.|+.|+|.. +.+.+|.+.|-+++.-++. +. ....-.-|+.
T Consensus 106 ~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~--------------------R~----~a~~r~~e~~ 161 (267)
T PF10234_consen 106 SLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREE--------------------RQ----RALARPLELN 161 (267)
T ss_pred chhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHH--------------------HH----HHHcCCcCHH
Confidence 56777766788888862 3445666666655432221 00 0011123556
Q ss_pred hHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q 001663 876 NVKKAAAMDSDVLSSEVSKLSRGLGNIG 903 (1035)
Q Consensus 876 ~VkkAAkVdle~L~~dv~kLekgL~kI~ 903 (1035)
.|+++-+--+..+..++.++++.|.++.
T Consensus 162 ~iE~~l~~ai~~~~~~~~~~~~~l~~l~ 189 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQLQQTQQQLNNLA 189 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555555555555555554
No 20
>PHA03247 large tegument protein UL36; Provisional
Probab=78.71 E-value=1.5e+02 Score=42.75 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=54.8
Q ss_pred hhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C---cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 874 LSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMG-M---DESRKKFSESMNRFMKMAEEEIIRIQAHESVALSL 949 (1035)
Q Consensus 874 L~~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~-~---~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~ 949 (1035)
|..|+++..+|.+.++ . |+..+..++...... . .+.-..|.+.+...+ ..+.+++.|+.++..++..
T Consensus 1656 L~~vEea~ELDvqAVe-W-------L~qAr~IiDsHpLT~~~~d~~GPm~~yaeRidaL~-~lR~~ld~Lrr~le~AEaa 1726 (3151)
T PHA03247 1656 LEQTEKAAELDVAAVD-W-------LEHARRVFEAHPLTAARGGGPDPLARLHARLDALG-ETRRRTEALRRSLEAAEAE 1726 (3151)
T ss_pred HHHhhhccccCHHHHH-H-------HHHHHHHhccCCcceeccCCCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 7788888888887652 2 333444444443221 1 123467888887754 5668899999999999999
Q ss_pred HHHHHHhccCCC
Q 001663 950 VKEITEYFHGNS 961 (1035)
Q Consensus 950 ~kel~eYFGED~ 961 (1035)
+++.|.-|+-+-
T Consensus 1727 WDeaW~~F~r~~ 1738 (3151)
T PHA03247 1727 WDEVWGRFGRVR 1738 (3151)
T ss_pred HHHHHHHHHHhc
Confidence 999999998653
No 21
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=78.19 E-value=0.68 Score=52.36 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCcCcCccccccCcc
Q 001663 227 SRGDTNCVSPELRPLPPLSQQASFKEDQRPRADVASSVAEDEDEEFYSPRV 277 (1035)
Q Consensus 227 ~~~~~k~~spel~plppl~~~~~~~~~~~~~~~~~~~~~e~~~~~fysp~~ 277 (1035)
.+.|.++++||=.| |+++. . .+| ....+||+|...|-|=-
T Consensus 223 pp~y~~~~~~~~~p---~~~~~-~-~~~------~~~~~~~~~~~~y~ppp 262 (290)
T PF05454_consen 223 PPEYPNSNMPESTP---LNQDT-L-GEY------TPLRDEDPDAPPYQPPP 262 (290)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCCCCCCCCCCC---ccccc-c-ccc------cccccCCCCCCccCCCC
Confidence 56788888888744 45543 1 111 12234556677787743
No 22
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=78.04 E-value=4.5 Score=43.89 Aligned_cols=16 Identities=6% Similarity=0.121 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001663 122 LILAFASVSSALVVGG 137 (1035)
Q Consensus 122 ~~~ais~~~~~~~~~~ 137 (1035)
++|||-||+++||++.
T Consensus 39 I~iaiVAG~~tVILVI 54 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVI 54 (221)
T ss_pred eeeeeecchhhhHHHH
Confidence 4555555555555544
No 23
>PHA03291 envelope glycoprotein I; Provisional
Probab=77.44 E-value=13 Score=43.19 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=25.7
Q ss_pred cCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001663 31 ASRRILHQPFFPLGAVPPSPPPSPAPPPPPPPTRKVPFSDTSTPNNSPFFP 81 (1035)
Q Consensus 31 ~~rr~lh~p~~p~~~~~p~~~p~~~p~~~~~~~~~~p~~~~~~p~~~pffp 81 (1035)
+.|--.-|=|.|.+..||+...-+|-....|..++-|.. +++|.++.-||
T Consensus 194 aprl~~~~v~~P~~~~p~~~t~~~p~~t~~p~~~~~p~~-tt~p~~~~~~~ 243 (401)
T PHA03291 194 APRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPS-TTIPAPSTTIA 243 (401)
T ss_pred ccccCccceeccCCCCCCcccCCCCcccCCCCCCCCCCC-CCCCCCcCCCC
Confidence 356667778889888766655322211122222322322 44555555554
No 24
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.42 E-value=1.1e+02 Score=37.56 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhh-HHHHHHHHHHHHHHHHHH
Q 001663 925 MNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIF-MVVRDFLTVLDRVCKEVG 990 (1035)
Q Consensus 925 M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF-~il~dFl~~~dka~kEv~ 990 (1035)
.+.|.-.|-...-..+..+.+|..+|.++..|.-+-..+-+.--+..| ..+.+.+..++++..+++
T Consensus 420 fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s~~e~l~~~~~~eli~el~k~k~s~~ 486 (593)
T KOG2460|consen 420 FKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELESFKESLLPLLLLELISELQKRKESLG 486 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhcccchHHHHHHHHHHHHHHhhh
Confidence 334443444444455667788888899999888653222111112234 566677777777666555
No 25
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=76.64 E-value=4.5 Score=50.62 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=17.1
Q ss_pred HHHHhcHHHHHHHHHHHHhccccccCCC
Q 001663 772 EELRNSRMFLKLLEAVLKTGNRMNVGTN 799 (1035)
Q Consensus 772 ~eLr~S~~L~~LL~iILaiGNfLN~gt~ 799 (1035)
.+-+.-+...++.-.+..|||.=-.|..
T Consensus 558 k~sr~lr~VleiILA~gNymns~kRg~a 585 (830)
T KOG1923|consen 558 KESRKLRPVLEIILAFGNYMNSSKRGAA 585 (830)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcccccc
Confidence 3344444555666677788887766653
No 26
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=74.86 E-value=95 Score=34.17 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=18.8
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhHHHH
Q 001663 727 AEKFLKAVLDVPFAFKRVDAMLYITNFESEV 757 (1035)
Q Consensus 727 aEqFll~L~~IP~~~~RL~allfk~~F~~~l 757 (1035)
+|-++..++-+|. ..|..-++|+..+..-+
T Consensus 11 ~Eial~~iL~Lpi-p~r~~~~~~~~~~~~~~ 40 (216)
T KOG1962|consen 11 AEIALFLILLLPI-PPRRRRKIFKDRLKSGL 40 (216)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhh
Confidence 5666666666666 66666666665555443
No 27
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=74.06 E-value=26 Score=35.13 Aligned_cols=72 Identities=7% Similarity=0.108 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 001663 919 KKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINE 994 (1035)
Q Consensus 919 dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~e 994 (1035)
..+...+..|++.-+++++.|+.....++....+... |+...-.+|..-|..++.|...|.++.+-+++...
T Consensus 14 ~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~----d~e~yl~nPlnaF~LIrRl~~dW~~~~~~~~~~~~ 85 (134)
T PF08336_consen 14 EELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKS----DPEEYLSNPLNAFSLIRRLHQDWPKWEKLMEQPVG 85 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhhhhhcHHHHHHHHHHHHHhhhhHHHHHHHhhh
Confidence 5678889999999999999998888877776665543 22222257888999999999999888776665533
No 28
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=73.06 E-value=52 Score=41.89 Aligned_cols=26 Identities=4% Similarity=-0.018 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Q 001663 934 EEIIRIQAHESVALSLVKEITEYFHG 959 (1035)
Q Consensus 934 ~eI~~Lq~~~~~a~~~~kel~eYFGE 959 (1035)
.+.+.|.+.++.++..++.+-+=.+|
T Consensus 242 ~r~~~L~~k~~~L~~e~~~LK~ELie 267 (683)
T PF08580_consen 242 DRYERLEKKWKKLEKEAESLKKELIE 267 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344555555555555555544444
No 29
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=72.87 E-value=4.9 Score=32.40 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 001663 121 LLILAFASVSSALVVGGILVFFYCRKRRQ 149 (1035)
Q Consensus 121 l~~~ais~~~~~~~~~~~~~~~~~~~r~~ 149 (1035)
-+++++.+|++ ++++.++.+.+|+||.+
T Consensus 7 aIIv~V~vg~~-iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 7 AIIVAVVVGMA-IIIICMFYYACCYKKHR 34 (38)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHcccc
Confidence 35555566666 34444555555544443
No 30
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=72.41 E-value=1.1 Score=44.62 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 001663 122 LILAFASVSSALVVGGILVFFYCRKRRQNGL 152 (1035)
Q Consensus 122 ~~~ais~~~~~~~~~~~~~~~~~~~r~~~~~ 152 (1035)
+.|..+|..+++++.+++.|+||||.||.+|
T Consensus 79 ~pi~~sal~v~lVl~llsg~lv~rrcrrr~~ 109 (129)
T PF12191_consen 79 WPILGSALSVVLVLALLSGFLVWRRCRRREK 109 (129)
T ss_dssp -------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 4455566666666555666677766665553
No 31
>PHA03247 large tegument protein UL36; Provisional
Probab=70.63 E-value=2.4e+02 Score=41.10 Aligned_cols=8 Identities=13% Similarity=0.584 Sum_probs=3.7
Q ss_pred CCcccccc
Q 001663 606 DREMVWDH 613 (1035)
Q Consensus 606 ~k~TIW~~ 613 (1035)
.+.+.|-.
T Consensus 3024 l~q~~~~~ 3031 (3151)
T PHA03247 3024 LKQTLWPP 3031 (3151)
T ss_pred cccCCCCC
Confidence 34455543
No 32
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=70.05 E-value=1.3e+02 Score=32.64 Aligned_cols=66 Identities=18% Similarity=0.053 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 001663 924 SMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINER 995 (1035)
Q Consensus 924 ~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~eR 995 (1035)
.+..=+..++.++...++.+..+.+.+++=+..|..+- -.+|=.+|.+|+...-...+++.+.+|+
T Consensus 147 ~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r------~~dfk~~l~~~~e~~ie~~k~~ie~We~ 212 (216)
T cd07627 147 SLLSELEEAERRASELKKEFEEVSELIKSELERFERER------VEDFRNSVEIYLESAIESQKELIELWET 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445667788888888888888888888788886431 1346667888888888888888777765
No 33
>PRK10132 hypothetical protein; Provisional
Probab=69.56 E-value=34 Score=33.66 Aligned_cols=72 Identities=8% Similarity=0.081 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001663 886 DVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNS 961 (1035)
Q Consensus 886 e~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~ 961 (1035)
+.|..||+.|-..++.+-..... ...+.-+...+++...++.+++++...+.....+......+-+|-+++|
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~----~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~P 86 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGS----DAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERP 86 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc
Confidence 45555666665555544322111 1112347788889999999999988877766666777777888888764
No 34
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=68.99 E-value=63 Score=32.38 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHH
Q 001663 930 KMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDR 984 (1035)
Q Consensus 930 ~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dk 984 (1035)
.....++..|+.++.++...|..+++.|||..-. . +++=..|.|.-.+|+.
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~--v--eEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEE--V--EELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--H--HHHHHHHHHHHHHHHH
Confidence 4455778889999999999999999999984321 1 3444555555555543
No 35
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=67.99 E-value=26 Score=36.49 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001663 754 ESEVEYLKKSFETLEAACEELR 775 (1035)
Q Consensus 754 ~~~l~~L~~~L~~l~~A~~eLr 775 (1035)
+.+++++...+..+...+..|.
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l~ 46 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKLQ 46 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554443
No 36
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.38 E-value=3.4 Score=46.69 Aligned_cols=32 Identities=34% Similarity=0.313 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 001663 120 KLLILAFASVSSALVVGGILVFFYCRKRRQNG 151 (1035)
Q Consensus 120 ~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~~ 151 (1035)
.|+.+||+.++.+|++++++++-|.||||++.
T Consensus 230 VlIslAiALG~v~ll~l~Gii~~~~~r~~~~~ 261 (281)
T PF12768_consen 230 VLISLAIALGTVFLLVLIGIILAYIRRRRQGY 261 (281)
T ss_pred EEEehHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 35788999999999999888666666665543
No 37
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=66.68 E-value=1.1e+02 Score=32.88 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 001663 924 SMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINER 995 (1035)
Q Consensus 924 ~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~eR 995 (1035)
.+..=+..++.++..++..+..+.+.++.=++.|..+-. .+|=.+|.+|+..--...+++-+++|.
T Consensus 167 ~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~------~d~k~~l~~~~~~~i~~~~~~~~~We~ 232 (236)
T PF09325_consen 167 QAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKV------KDFKSMLEEYAESQIEYQKKMLEAWET 232 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556677777777777887777777777777764321 245567777777776667776666654
No 38
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=66.37 E-value=0.47 Score=38.46 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 001663 122 LILAFAS 128 (1035)
Q Consensus 122 ~~~ais~ 128 (1035)
++||+++
T Consensus 11 vaIa~~V 17 (40)
T PF08693_consen 11 VAIAVGV 17 (40)
T ss_pred EEEEEEE
Confidence 4444443
No 39
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=65.86 E-value=5.8 Score=36.37 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 001663 122 LILAFASVSSALVVGGILVFFYCRKRRQN 150 (1035)
Q Consensus 122 ~~~ais~~~~~~~~~~~~~~~~~~~r~~~ 150 (1035)
+++++.+++..++++.++ +++++||+++
T Consensus 2 ii~~~~~g~~~ll~~v~~-~~~~~rr~~~ 29 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVII-VIVCFRRCKY 29 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHCCCTT---
T ss_pred EEehHHHHHHHHHHhhee-EEEEEeeEcC
Confidence 344444444434444333 3444444433
No 40
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=65.68 E-value=58 Score=28.54 Aligned_cols=65 Identities=6% Similarity=0.125 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 001663 924 SMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINE 994 (1035)
Q Consensus 924 ~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~e 994 (1035)
.|..+..........|+..+..+...+..+...+.++... .|...+..|...++++++.+..+.+
T Consensus 8 ~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~------af~~~~~~~~~~~~~~~~~L~~~~~ 72 (86)
T PF06013_consen 8 QLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAAD------AFQDKFEEWNQAFRQLNEALEELSQ 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556667777777777788887788765432 3555556666666666665555444
No 41
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=64.89 E-value=12 Score=40.96 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHH----HHHHHHHHHH
Q 001663 931 MAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTV----LDRVCKEVGM 991 (1035)
Q Consensus 931 ~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~----~dka~kEv~k 991 (1035)
.++++|...++.+.+..+.....+.=|-+.. + +.-..|.+|+.. +++|..-++.
T Consensus 146 ~~eeElr~Ae~kfees~E~a~~~M~~i~~~e----~---e~~~~L~~lv~AQl~Yh~q~~e~L~~ 203 (215)
T cd07593 146 RLEEELRRAKAKYEESSEDVEARMVAIKESE----A---DQYRDLTDLLDAELDYHQQSLDVLRE 203 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----h---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777776665421 1 234445566533 4555444444
No 42
>PRK10404 hypothetical protein; Provisional
Probab=63.70 E-value=58 Score=31.66 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCC
Q 001663 886 DVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESV-ALSLVKEITEYFHGNS 961 (1035)
Q Consensus 886 e~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~-a~~~~kel~eYFGED~ 961 (1035)
+.|..||+.|..+++.+-..... ...+.-+.+.+++...++.++.++..+...... +......+-+|-+++|
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~----~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGD----PADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34555666666666554332211 012335678888888888888888877665433 5666677777888754
No 43
>PTZ00370 STEVOR; Provisional
Probab=62.94 E-value=6.9 Score=44.22 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=8.5
Q ss_pred HHHHHhhhhhhccC
Q 001663 137 GILVFFYCRKRRQN 150 (1035)
Q Consensus 137 ~~~~~~~~~~r~~~ 150 (1035)
.|+-+|+||||.+-
T Consensus 272 iilYiwlyrrRK~s 285 (296)
T PTZ00370 272 IILYIWLYRRRKNS 285 (296)
T ss_pred HHHHHHHHHhhcch
Confidence 34556777776654
No 44
>PRK11637 AmiB activator; Provisional
Probab=62.11 E-value=2e+02 Score=34.30 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001663 754 ESEVEYLKKSFETLEAACEELR 775 (1035)
Q Consensus 754 ~~~l~~L~~~L~~l~~A~~eLr 775 (1035)
..++..+...|..+...++.++
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444544444444443
No 45
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=61.57 E-value=2.7 Score=47.13 Aligned_cols=28 Identities=36% Similarity=0.530 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 001663 123 ILAFASVSSALVVGGILVFFYCRKRRQNG 151 (1035)
Q Consensus 123 ~~ais~~~~~~~~~~~~~~~~~~~r~~~~ 151 (1035)
-+++..||..+++++++ .||.||||.|+
T Consensus 229 ~lLVPSiILVLLaVGGL-LfYr~rrRs~~ 256 (285)
T PF05337_consen 229 YLLVPSIILVLLAVGGL-LFYRRRRRSHR 256 (285)
T ss_dssp -----------------------------
T ss_pred cccccchhhhhhhccce-eeecccccccc
Confidence 34555666667777777 67777777777
No 46
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=60.84 E-value=9 Score=43.28 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=8.5
Q ss_pred HHHHHhhhhhhccC
Q 001663 137 GILVFFYCRKRRQN 150 (1035)
Q Consensus 137 ~~~~~~~~~~r~~~ 150 (1035)
.|+-+|+||||++-
T Consensus 276 iiLYiWlyrrRK~s 289 (295)
T TIGR01478 276 IILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHhhccc
Confidence 35556777776654
No 47
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=60.18 E-value=1.7 Score=42.70 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=0.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCC
Q 001663 126 FASVSSALVVGGILVFFYCRKRRQNG 151 (1035)
Q Consensus 126 is~~~~~~~~~~~~~~~~~~~r~~~~ 151 (1035)
|...++.|++|+++.+||||||.--+
T Consensus 29 IGiL~VILgiLLliGCWYckRRSGYk 54 (118)
T PF14991_consen 29 IGILIVILGILLLIGCWYCKRRSGYK 54 (118)
T ss_dssp SS------------------------
T ss_pred ceeHHHHHHHHHHHhheeeeecchhh
Confidence 33344445555667789988876554
No 48
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=57.07 E-value=8.2 Score=41.78 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 001663 120 KLLILAFASVSSALVVGGILVFFYCRKRR 148 (1035)
Q Consensus 120 ~l~~~ais~~~~~~~~~~~~~~~~~~~r~ 148 (1035)
.||++++++++..|++++++++|+|.||.
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 45666666555544444444444444443
No 49
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.86 E-value=4.6e+02 Score=32.31 Aligned_cols=14 Identities=7% Similarity=-0.088 Sum_probs=8.5
Q ss_pred hCcccHHHHHHHHH
Q 001663 735 LDVPFAFKRVDAML 748 (1035)
Q Consensus 735 ~~IP~~~~RL~all 748 (1035)
...+.+..|++|-.
T Consensus 334 vGF~dL~~R~K~Q~ 347 (508)
T KOG3091|consen 334 VGFEDLRQRLKVQD 347 (508)
T ss_pred cchHHHHHHHHHHH
Confidence 34556677777653
No 50
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=56.70 E-value=4.1 Score=46.76 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 001663 572 VELPPSS 578 (1035)
Q Consensus 572 ~~lP~~~ 578 (1035)
.++++|.
T Consensus 267 aeLN~G~ 273 (312)
T PF01213_consen 267 AELNQGE 273 (312)
T ss_dssp -------
T ss_pred HHHhccC
Confidence 3444443
No 51
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.57 E-value=4.4e+02 Score=33.00 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=20.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001663 745 DAMLYITNFESEVEYLKKSFETLEAACEELR 775 (1035)
Q Consensus 745 ~allfk~~F~~~l~~L~~~L~~l~~A~~eLr 775 (1035)
.+|-.+..+++.++++...+..+..+...|+
T Consensus 361 ~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~ 391 (581)
T KOG0995|consen 361 EVWELKLEIEDFFKELEKKFIDLNSLIRRIK 391 (581)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777666655553
No 52
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.02 E-value=95 Score=33.60 Aligned_cols=22 Identities=5% Similarity=0.199 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 001663 975 VRDFLTVLDRVCKEVGMINERT 996 (1035)
Q Consensus 975 l~dFl~~~dka~kEv~k~~eR~ 996 (1035)
+++--+.||++.++.....+|.
T Consensus 103 vKE~kk~Fdk~s~~yd~al~k~ 124 (200)
T cd07603 103 VKESKKHFEKISDDLDNALVKN 124 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666653
No 53
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=54.58 E-value=10 Score=44.95 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=9.1
Q ss_pred cCCChHHHHHHHHh
Q 001663 722 TKLGPAEKFLKAVL 735 (1035)
Q Consensus 722 ~~L~~aEqFll~L~ 735 (1035)
.+..-+|||.....
T Consensus 455 ~EfpvPEQfkt~~~ 468 (480)
T KOG2675|consen 455 VEFPVPEQFKTKFN 468 (480)
T ss_pred ccccChHHHhhhcc
Confidence 45667888876543
No 54
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.57 E-value=1.5e+02 Score=33.20 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=52.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001663 880 AAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFH 958 (1035)
Q Consensus 880 AAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFG 958 (1035)
+..+.++.|..++..++..|.++++.+...+.......+.+=+..+..=+..|++++..|...+..+++.++++..+--
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777766555433211112344555677777778888888888888888777777776653
No 55
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=54.56 E-value=13 Score=43.80 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 001663 118 SQKLLILAFASVSSALVVGGILVFFYCRKRRQNGL 152 (1035)
Q Consensus 118 ~~~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~~~ 152 (1035)
.--++.+||-++++++++++++.++||||-+..++
T Consensus 283 ~d~~vtl~iPl~i~llL~llLs~Imc~rREG~~~r 317 (386)
T PF05510_consen 283 PDFLVTLAIPLIIALLLLLLLSYIMCCRREGVKKR 317 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheechHHhhcc
Confidence 34568899999999999999998999998888763
No 56
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=54.21 E-value=2 Score=35.02 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001663 120 KLLILAFASVSSALVVGGIL 139 (1035)
Q Consensus 120 ~l~~~ais~~~~~~~~~~~~ 139 (1035)
+.++|+|-+++.+++++.++
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l 32 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFL 32 (40)
T ss_pred EEEEEEechHHHHHHHHHHh
Confidence 44667777665544444333
No 57
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=53.18 E-value=2.2e+02 Score=31.52 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 001663 930 KMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINE 994 (1035)
Q Consensus 930 ~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~e 994 (1035)
.+|+++|...++.+.+..+....++.=+-+.... +-..+...|..-+.-|++|...+..++.
T Consensus 157 ~kae~elr~A~~kf~~~~E~a~~~M~~il~~~~e---~l~~L~~lv~AQl~Yh~q~~e~L~~l~~ 218 (220)
T cd07617 157 KKAEHELRVAQTEFDRQAEVTRLLLEGISSTHVN---HLRCLHEFVEAQATYYAQCYRHMLDLQK 218 (220)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888888888888877777766656543211 1122333344444556666666665543
No 58
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.34 E-value=1.1e+02 Score=36.94 Aligned_cols=86 Identities=7% Similarity=0.160 Sum_probs=47.4
Q ss_pred cccchhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 868 SGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMG--MDESRKKFSESMNRFMKMAEEEIIRIQAHESV 945 (1035)
Q Consensus 868 ~~Ls~EL~~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~--~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~ 945 (1035)
..+..|+..++++.+ .+...++++...++++.++++..++.. .-+..+-...++++-.+.-++.+...+++..+
T Consensus 364 ~~l~~~~~~~e~~kk----~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~d 439 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKK----IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITD 439 (493)
T ss_pred HhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444332 233445555555555554443222100 01224556666666666666777777777777
Q ss_pred HHHHHHHHHHhc
Q 001663 946 ALSLVKEITEYF 957 (1035)
Q Consensus 946 a~~~~kel~eYF 957 (1035)
+++.+++++-|+
T Consensus 440 LqEQlrDlmf~l 451 (493)
T KOG0804|consen 440 LQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHhHheeh
Confidence 788888888766
No 59
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=52.24 E-value=6.9e+02 Score=32.99 Aligned_cols=190 Identities=13% Similarity=0.187 Sum_probs=97.6
Q ss_pred CChHHHHHHHHh----CcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcc------c
Q 001663 724 LGPAEKFLKAVL----DVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGN------R 793 (1035)
Q Consensus 724 L~~aEqFll~L~----~IP~~~~RL~allfk~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGN------f 793 (1035)
..--|.|...|- +.+.-.+|.++|.-..+|.-+-.........+..|-+.| +.|+.+|.-|| |
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl-------~AMraLLKSGdt~KI~FF 1193 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKL-------SAMRALLKSGDTQKIRFF 1193 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHH-------HHHHHHHhcCCcceEEEE
Confidence 344566654442 345777899998888888776555555556666666655 35677788887 3
Q ss_pred cccCCCCCceeeeccccccccccccCCCCCccHHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchh
Q 001663 794 MNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSE 873 (1035)
Q Consensus 794 LN~gt~rG~A~GFkLsSL~KL~dtKs~D~k~TLLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~E 873 (1035)
.|.. +....+=.--..|.-|. - .|+..++-|.+ . .+-+ | +.|..|.+|++
T Consensus 1194 An~s-RqkEiYImAANyLQtlD-W--q~~pq~mK~I~-t-FYTK-g----------------------qafd~LanFY~- 1243 (1416)
T KOG3617|consen 1194 ANTS-RQKEIYIMAANYLQTLD-W--QDNPQTMKDIE-T-FYTK-G----------------------QAFDHLANFYK- 1243 (1416)
T ss_pred eecc-ccceeeeehhhhhhhcc-c--ccChHHHhhhH-h-hhhc-c----------------------hhHHHHHHHHH-
Confidence 3433 22333333334444331 1 12233333332 2 2111 1 11223444442
Q ss_pred hhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 874 LSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEI 953 (1035)
Q Consensus 874 L~~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel 953 (1035)
.+|.|..|++ +.+.+.+..+++...+..+.........-.+.++.=+...+..|..++....+....++++
T Consensus 1244 -----~cAqiEiee~----q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc 1314 (1416)
T KOG3617|consen 1244 -----SCAQIEIEEL----QTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQC 1314 (1416)
T ss_pred -----HHHHhhHHHH----hhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455555544 3333334333333222111100111344456666667777777777777777777777777
Q ss_pred HHhccC
Q 001663 954 TEYFHG 959 (1035)
Q Consensus 954 ~eYFGE 959 (1035)
....-|
T Consensus 1315 ~~llee 1320 (1416)
T KOG3617|consen 1315 TTLLEE 1320 (1416)
T ss_pred HHHhhC
Confidence 776644
No 60
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=52.16 E-value=14 Score=41.41 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=4.7
Q ss_pred CCCCCCCCC
Q 001663 240 PLPPLSQQA 248 (1035)
Q Consensus 240 plppl~~~~ 248 (1035)
||=|-+|-.
T Consensus 26 PL~pcpR~~ 34 (253)
T PF05308_consen 26 PLKPCPRPH 34 (253)
T ss_pred CCCCCCCce
Confidence 455555544
No 61
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=51.38 E-value=2.6e+02 Score=27.79 Aligned_cols=98 Identities=11% Similarity=0.166 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccC
Q 001663 884 DSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQ----AHESVALSLVKEITEYFHG 959 (1035)
Q Consensus 884 dle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq----~~~~~a~~~~kel~eYFGE 959 (1035)
+.+.+..++++|-..++.|-.......... -+..-.|.+.|..-+++.+.-+.+|+ -+.+.+.+..+..+.-||-
T Consensus 6 ~SeiVq~e~~~if~~yq~l~~~~~~~~~fd-~egK~~~Id~m~~LidkqkiF~~Rl~LSdD~~Ak~m~~qi~~~~~~fG~ 84 (108)
T PF08855_consen 6 DSEIVQDELQDIFEDYQELMQMGSKYGKFD-REGKKIHIDKMEELIDKQKIFYKRLELSDDPEAKDMKEQINAQLNQFGY 84 (108)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHcCC
Confidence 456677777777777776654433221111 12245577788877777776666653 2345577778888889986
Q ss_pred CCCCCcCCcchhhHHHHHHHHHHHHHHHHH
Q 001663 960 NSAREEAHPFRIFMVVRDFLTVLDRVCKEV 989 (1035)
Q Consensus 960 D~~kee~~P~~fF~il~dFl~~~dka~kEv 989 (1035)
.+ ..+-.++......++++.+|+
T Consensus 85 ~~-------~~l~~~fd~m~~tLe~mkq~~ 107 (108)
T PF08855_consen 85 TP-------QDLSQMFDQMNQTLERMKQEI 107 (108)
T ss_pred Cc-------chHHHHHHHHHHHHHHHHHhc
Confidence 54 112233345555555555554
No 62
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=50.74 E-value=3.2e+02 Score=29.84 Aligned_cols=66 Identities=17% Similarity=0.045 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 001663 924 SMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINER 995 (1035)
Q Consensus 924 ~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~eR 995 (1035)
.++.=+..++.+....+..+..+.+.++.=+..|..+- -.+|=.+|..|+...-...+++-+.+|.
T Consensus 153 ~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~er------v~dfk~~l~~~le~~i~~q~~~~~~We~ 218 (224)
T cd07623 153 QAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNR------VKDFKDIIIKYLESLLNTQQQLIKYWEA 218 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777777777888888887777777886431 1245556777777766666666665554
No 63
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.71 E-value=4.1e+02 Score=35.03 Aligned_cols=272 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred HhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHH-hhCCChHHHHH-HHhhhcccccCCChHHHHHHHHhCcc---------
Q 001663 670 LRALNVTIEEVCEALLEGNADTLGTELLESLL-KMAPTKEEERK-LKEYKDESLTKLGPAEKFLKAVLDVP--------- 738 (1035)
Q Consensus 670 L~klkls~eeI~~AIl~~D~~~L~~E~Le~Ll-k~lPT~EEi~~-Lkey~gd~p~~L~~aEqFll~L~~IP--------- 738 (1035)
|..+++--.|=...|+.+|...+..|.++-.. +|+-...++++ |+....+.-.-+.--|++..+|.++-
T Consensus 240 LetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTld 319 (1243)
T KOG0971|consen 240 LETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLD 319 (1243)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred --cHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccccCCCCCceeeecc-------
Q 001663 739 --FAFKRVDAMLYI-TNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKL------- 808 (1035)
Q Consensus 739 --~~~~RL~allfk-~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkL------- 808 (1035)
.+++|.+.|-.- ....++++++...|+.|.+-+++= -++...+.++-||=
T Consensus 320 KEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek--------------------G~~~~~~ss~qfkqlEqqN~r 379 (1243)
T KOG0971|consen 320 KEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK--------------------GSDGQAASSYQFKQLEQQNAR 379 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------CCCCcccchHHHHHHHHHHHH
Q ss_pred --ccccccccccCC---------------CCCccHHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccc
Q 001663 809 --DTLLKLVDVKGA---------------DGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLS 871 (1035)
Q Consensus 809 --sSL~KL~dtKs~---------------D~k~TLLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls 871 (1035)
+.|.||.|+-+. ..-.+-|.-+.+.+-+.- |..+-. |.+|.
T Consensus 380 LKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~----------------d~aEs~------iadlk 437 (1243)
T KOG0971|consen 380 LKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSREL----------------DQAEST------IADLK 437 (1243)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----------------HHHHHH------HHHHH
Q ss_pred hhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 872 SELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVK 951 (1035)
Q Consensus 872 ~EL~~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~k 951 (1035)
+.....--|..| ++.|..---.|+..++.+++.+.-.+.. ++-++...+.-+.-..+-.++|+.++...+++.....
T Consensus 438 EQVDAAlGAE~M-V~qLtdknlnlEekVklLeetv~dlEal--ee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~ 514 (1243)
T KOG0971|consen 438 EQVDAALGAEEM-VEQLTDKNLNLEEKVKLLEETVGDLEAL--EEMNEQLQESNRELELDLREELDMAKGARKELQKRVE 514 (1243)
T ss_pred HHHHHhhcHHHH-HHHHHhhccCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 001663 952 EITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINE 994 (1035)
Q Consensus 952 el~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~e 994 (1035)
...+.. .+...-..-|++.+..+.....|.+..++
T Consensus 515 aaqet~--------yDrdqTI~KfRelva~Lqdqlqe~~dq~~ 549 (1243)
T KOG0971|consen 515 AAQETV--------YDRDQTIKKFRELVAHLQDQLQELTDQQE 549 (1243)
T ss_pred HHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 64
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.71 E-value=1.4e+02 Score=33.02 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=42.4
Q ss_pred hHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 876 NVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVK 951 (1035)
Q Consensus 876 ~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~k 951 (1035)
.......-..+.+..+-.+|...++.+.++++.. ..+.+.+...+...++++..|+.+...+...-.
T Consensus 35 ~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L---------~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 35 QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENL---------EVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455667777777777777777666543 345667777777777777777776666554433
No 65
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.35 E-value=3.8e+02 Score=29.13 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001663 750 ITNFESEVEYLKKSFETLEAACEELRNS 777 (1035)
Q Consensus 750 k~~F~~~l~~L~~~L~~l~~A~~eLr~S 777 (1035)
+.+.+..+++|+..|+.+.+.|+.+.+.
T Consensus 4 ~~~~E~~~~~le~~l~kl~K~~~~~~d~ 31 (200)
T cd07637 4 IDEVETDVVEIEAKLDKLVKLCSGMIEA 31 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999988765
No 66
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=49.23 E-value=1.4e+02 Score=28.05 Aligned_cols=52 Identities=10% Similarity=0.215 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 891 EVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESV 945 (1035)
Q Consensus 891 dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~ 945 (1035)
.|.+|...+..++..+.... .......+.+.|..-...+.+.+..+...+..
T Consensus 4 ~l~~in~~v~~l~k~~~~lG---t~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~ 55 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLG---TPRDSQELREKIHQLIQKTNQLIKEISELLKK 55 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH----SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC---CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444322 22235667777777666666666555544443
No 67
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=48.82 E-value=7e+02 Score=32.06 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHH
Q 001663 936 IIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEV 989 (1035)
Q Consensus 936 I~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv 989 (1035)
|..+++++..+...|..++..|||.. ++. .++-..|.|...+|+.-..|+
T Consensus 906 ~p~~~~~ledL~qRy~a~LqmyGEk~--Ee~--EELrlDl~dlK~mYk~QIdeL 955 (961)
T KOG4673|consen 906 VPGIKAELEDLRQRYAAALQMYGEKD--EEL--EELRLDLVDLKEMYKEQIDEL 955 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchH--HHH--HHHHhhHHHHHHHHHHHHHHH
Confidence 44567777777788888999999853 222 344455666666666544444
No 68
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.32 E-value=1.2e+02 Score=29.50 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=48.1
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 880 AAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITE 955 (1035)
Q Consensus 880 AAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~e 955 (1035)
|.+-+++.|.+.+.++.+.+..++..++.... .+. ...++.-+.+.+.++..+.+.++.+.....-+++
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt------~~d-v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPT------RDD-VHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888888775431 122 3466777777888888888887776665555554
No 69
>PF15050 SCIMP: SCIMP protein
Probab=47.78 E-value=25 Score=35.13 Aligned_cols=29 Identities=34% Similarity=0.505 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh-hccCC
Q 001663 120 KLLILAFASVSSALVVGGILVFFYCRK-RRQNG 151 (1035)
Q Consensus 120 ~l~~~ais~~~~~~~~~~~~~~~~~~~-r~~~~ 151 (1035)
++|||||. +..+++.+|+ |+.||+ +||.+
T Consensus 10 iiLAVaII--~vS~~lglIl-yCvcR~~lRqGk 39 (133)
T PF15050_consen 10 IILAVAII--LVSVVLGLIL-YCVCRWQLRQGK 39 (133)
T ss_pred HHHHHHHH--HHHHHHHHHH-HHHHHHHHHccc
Confidence 45666643 3444444455 444444 44444
No 70
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=47.07 E-value=1.1e+02 Score=28.71 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCC
Q 001663 887 VLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHE-SVALSLVKEITEYFHGN 960 (1035)
Q Consensus 887 ~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~-~~a~~~~kel~eYFGED 960 (1035)
+|..++..|..+++.+...+.... .+..+...+.+...++.+.+++..+.... ..+.+....+-+|-.++
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~----~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA----GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 345556666666665554432211 11235566666666777766666554332 23344455555565543
No 71
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=47.04 E-value=1.2e+02 Score=33.77 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001663 931 MAEEEIIRIQAHESVALSLVKEITEYFHG 959 (1035)
Q Consensus 931 ~Ae~eI~~Lq~~~~~a~~~~kel~eYFGE 959 (1035)
.++++|...++.+.+..+....++.=+-+
T Consensus 167 ~~e~elr~Ae~kF~~~~E~a~~~M~~i~~ 195 (229)
T cd07594 167 QAEQDLRVAQSEFDRQAEITKLLLEGISS 195 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666655544
No 72
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.60 E-value=1.2e+02 Score=34.34 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=43.1
Q ss_pred hhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 872 SELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVK 951 (1035)
Q Consensus 872 ~EL~~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~k 951 (1035)
+.|..+++ ++++++=|.+-+.++....+..... +..+ ...+..++..+.+..=++...+++.+.++.++++.+.+.
T Consensus 156 ~~l~DLes-a~vkV~WLR~~L~Ei~Ea~e~~~~~-~~~e--~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~ 231 (269)
T PF05278_consen 156 ATLKDLES-AKVKVDWLRSKLEEILEAKEIYDQH-ETRE--EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERIT 231 (269)
T ss_pred HHHHHHHH-cCcchHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 4666666665555544332222110 0000 001223555556666666666666666667777777777
Q ss_pred HHHHhccC
Q 001663 952 EITEYFHG 959 (1035)
Q Consensus 952 el~eYFGE 959 (1035)
++....|+
T Consensus 232 e~~~rl~~ 239 (269)
T PF05278_consen 232 EMKGRLGE 239 (269)
T ss_pred HHHHHHHH
Confidence 77776664
No 73
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=46.60 E-value=2.5e+02 Score=26.64 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 886 DVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLV 950 (1035)
Q Consensus 886 e~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~ 950 (1035)
+.|..+|..|...+..|+......... .+ ......+.|..-+..+......++..++.+....
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~-~~-~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~ 73 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTP-PD-ADKELREKLERLIDDIKRLAKEIRAKLKELEKEN 73 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345556666666666655544332211 11 2245666666666666666666666666554443
No 74
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=45.75 E-value=11 Score=44.48 Aligned_cols=33 Identities=21% Similarity=0.516 Sum_probs=17.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhh-hhhccCC
Q 001663 116 RSSQKLLILAFASVSSALVVGGILVFFYC-RKRRQNG 151 (1035)
Q Consensus 116 ~~~~~l~~~ais~~~~~~~~~~~~~~~~~-~~r~~~~ 151 (1035)
...-+|+||+|-+.|.+++. ++||.+ ||||+|.
T Consensus 384 ~~~~i~~avl~p~~il~~~~---~~~~~~v~rrr~~~ 417 (436)
T PTZ00208 384 RTAMIILAVLVPAIILAIIA---VAFFIMVKRRRNSS 417 (436)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHhheeeeeccCCc
Confidence 34556677777766655332 234444 5555554
No 75
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=45.57 E-value=1.6e+02 Score=29.09 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCC
Q 001663 886 DVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRI-QAHESVALSLVKEITEYFHGNS 961 (1035)
Q Consensus 886 e~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~L-q~~~~~a~~~~kel~eYFGED~ 961 (1035)
+.|..|++.|...++.+ ++... ....+.-++.+.+...-+++++.++... .......+.....+=+|-+++|
T Consensus 11 ~~l~~el~~L~d~lEev---L~ssg-~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 11 DQLLAELQELLDTLEEV---LKSSG-SLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHH---HHhcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 45666666666555543 33221 1123446778889999999999999888 4455566666777777888764
No 76
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.45 E-value=2.6e+02 Score=34.04 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhcc
Q 001663 932 AEEEIIRIQAHESVALSLV-KEITEYFH 958 (1035)
Q Consensus 932 Ae~eI~~Lq~~~~~a~~~~-kel~eYFG 958 (1035)
|++++...++.++.++..+ .+|=..|+
T Consensus 162 AeeEl~~Aq~~fE~lN~~L~eELP~L~~ 189 (460)
T KOG3771|consen 162 AEEELEKAQQVFEELNNELLEELPALYS 189 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777644 44555554
No 77
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.15 E-value=2.4e+02 Score=36.00 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=29.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 915 DESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKE 952 (1035)
Q Consensus 915 ~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~ke 952 (1035)
++.-+++...+..|-+...++++.++....++.+++..
T Consensus 225 ~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~ 262 (660)
T KOG4302|consen 225 DETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNL 262 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888888888888888888877777766643
No 78
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=44.48 E-value=5.5e+02 Score=29.62 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=15.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001663 750 ITNFESEVEYLKKSFETLEAACEELR 775 (1035)
Q Consensus 750 k~~F~~~l~~L~~~L~~l~~A~~eLr 775 (1035)
+.++..+|-+|....+.|..+|+.|.
T Consensus 23 iSeLP~eY~~LE~k~D~l~~~~~~~L 48 (289)
T PF10455_consen 23 ISELPQEYLELEKKVDALKKVYKRLL 48 (289)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665543
No 79
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=44.24 E-value=27 Score=40.97 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 001663 120 KLLILAFASVSSALVVGGILVFFYCRKRRQNGL 152 (1035)
Q Consensus 120 ~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~~~ 152 (1035)
-|++.||-.++++++++++++++||||-++.++
T Consensus 297 f~~tfaIpl~Valll~~~La~imc~rrEg~~~r 329 (449)
T KOG4482|consen 297 FLHTFAIPLGVALLLVLALAYIMCCRREGQKKR 329 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 456888888999999998888999888887753
No 80
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=44.18 E-value=3.1e+02 Score=31.76 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=21.6
Q ss_pred ccchhhhhHHH-hhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 001663 869 GLSSELSNVKK-AAAMDSDVLSSEVSKLSRGLGNIGEVV 906 (1035)
Q Consensus 869 ~Ls~EL~~Vkk-AAkVdle~L~~dv~kLekgL~kI~eel 906 (1035)
.|.+.|..|.. -..|+..+|...+.+++..|...++.+
T Consensus 52 ~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i 90 (301)
T PF06120_consen 52 EFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAI 90 (301)
T ss_pred HHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555543 345666666666666666665554443
No 81
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=44.11 E-value=6.9e+02 Score=30.75 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001663 919 KKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEY 956 (1035)
Q Consensus 919 dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eY 956 (1035)
++....+..=--.|++.++.|++.+.+.+.+..++..-
T Consensus 392 ~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~ 429 (622)
T COG5185 392 DKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRS 429 (622)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444444444556666667766666665555555443
No 82
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=43.88 E-value=23 Score=40.64 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 001663 122 LILAFASVSSALVVGGILVFFYCRKRRQ 149 (1035)
Q Consensus 122 ~~~ais~~~~~~~~~~~~~~~~~~~r~~ 149 (1035)
++.+|..|+-+||||.|..+|-|||.++
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444455555555555555333
No 83
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=43.79 E-value=2.4e+02 Score=31.53 Aligned_cols=28 Identities=7% Similarity=-0.080 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001663 931 MAEEEIIRIQAHESVALSLVKEITEYFH 958 (1035)
Q Consensus 931 ~Ae~eI~~Lq~~~~~a~~~~kel~eYFG 958 (1035)
..+++++..+..+.++.+.+...+.=|-
T Consensus 162 ~l~eE~e~ae~k~e~~~e~~~~~M~~~l 189 (244)
T cd07595 162 ALKDEYEEAELKLEQCRDALATDMYEFL 189 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566555555544444443
No 84
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=43.74 E-value=2.9e+02 Score=26.20 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001663 885 SDVLSSEVSKLSRGLGNIGEVVQLN 909 (1035)
Q Consensus 885 le~L~~dv~kLekgL~kI~eelq~~ 909 (1035)
+..+..++.++..+|..|...+...
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l 27 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAEL 27 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777776655443
No 85
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=43.19 E-value=34 Score=47.30 Aligned_cols=8 Identities=25% Similarity=0.850 Sum_probs=4.8
Q ss_pred cccccccc
Q 001663 608 EMVWDHLR 615 (1035)
Q Consensus 608 ~TIW~~l~ 615 (1035)
..+|..+.
T Consensus 1762 ~s~W~Ri~ 1769 (2039)
T PRK15319 1762 GSVWARFK 1769 (2039)
T ss_pred CCeEEEEe
Confidence 46776654
No 86
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=42.64 E-value=6.9 Score=37.52 Aligned_cols=6 Identities=33% Similarity=0.490 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001663 124 LAFASV 129 (1035)
Q Consensus 124 ~ais~~ 129 (1035)
|+|.++
T Consensus 71 i~vg~~ 76 (96)
T PTZ00382 71 ISVAVV 76 (96)
T ss_pred EEeehh
Confidence 333333
No 87
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=42.26 E-value=2.6e+02 Score=31.85 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001663 922 SESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYF 957 (1035)
Q Consensus 922 ~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYF 957 (1035)
.+.+...++..+.+++.+++.+.++.+.++++.+-+
T Consensus 195 ke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 195 KEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666665554
No 88
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.18 E-value=1.9e+02 Score=25.61 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001663 885 SDVLSSEVSKLSRGLGNIGEVVQ 907 (1035)
Q Consensus 885 le~L~~dv~kLekgL~kI~eelq 907 (1035)
++.|..+|+.|...+..|..++.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~ 27 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVN 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777766554
No 89
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=42.03 E-value=7.2e+02 Score=30.23 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001663 883 MDSDVLSSEVSKLSRGLGNIG-EVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNS 961 (1035)
Q Consensus 883 Vdle~L~~dv~kLekgL~kI~-eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~ 961 (1035)
.+++.+...+..++-.|++++ .+|+.... .. .|+..-++-+..|+++++++.+.|..+-.+--+-.
T Consensus 260 ~~L~~m~~~i~~~kp~WkKiWE~EL~~V~e------EQ-------qfL~~QedL~~DL~eDl~k~~etf~lveq~~~~Q~ 326 (424)
T PF03915_consen 260 KELKKMKEYIKTEKPIWKKIWESELQKVCE------EQ-------QFLKLQEDLLSDLKEDLKKASETFALVEQCTEEQE 326 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356677788888888888876 45654321 23 35555555566666666666665555544332211
Q ss_pred CCCcCCcchhhHHH------HHHHHHHHHHHHHHHHh
Q 001663 962 AREEAHPFRIFMVV------RDFLTVLDRVCKEVGMI 992 (1035)
Q Consensus 962 ~kee~~P~~fF~il------~dFl~~~dka~kEv~k~ 992 (1035)
........+++..+ .++-...+.++.||+.+
T Consensus 327 k~~~~~~~r~~~~~~~~~pg~~~~~~~~~VL~EV~aL 363 (424)
T PF03915_consen 327 KSPSRSRNRPVANLPIPEPGEDPHEARDQVLGEVRAL 363 (424)
T ss_dssp -------------------------------------
T ss_pred ccCCCCCCCCccCCCCCCCCCChhhHHHHHHHHHHhc
Confidence 11111112233111 25556667777777633
No 90
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.96 E-value=5e+02 Score=32.62 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001663 923 ESMNRFMKMAEEEIIRIQAHESVALSLVKEITEY 956 (1035)
Q Consensus 923 e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eY 956 (1035)
+.+-.|.++..+++..|+........+-+++...
T Consensus 321 ~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l 354 (557)
T COG0497 321 EDLLEYLDKIKEELAQLDNSEESLEALEKEVKKL 354 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3444555555555555555444444443333333
No 91
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=41.54 E-value=20 Score=44.86 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001663 923 ESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFH 958 (1035)
Q Consensus 923 e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFG 958 (1035)
+.|+.|+..+..+|..++...--..+.-.....||.
T Consensus 282 ~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~ 317 (619)
T PF03999_consen 282 QNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYI 317 (619)
T ss_dssp ------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhc
Confidence 456666667776666666554433333333444443
No 92
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=41.39 E-value=1.6e+02 Score=34.04 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=13.5
Q ss_pred HHHhccccccCCCCCceeeeccccccccccccC
Q 001663 787 VLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 819 (1035)
Q Consensus 787 ILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs 819 (1035)
.+.+|--|-..+..|.+.+--=.+..++.++|+
T Consensus 92 mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~ 124 (366)
T KOG1118|consen 92 MIKHGKELGDDSSFGHTLIDAGESMREIGEVKD 124 (366)
T ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHHHHHH
Confidence 344444444433333333322234444555444
No 93
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.13 E-value=2.8e+02 Score=27.93 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 922 SESMNRFMKMAEEEIIRIQAHESVALSLVKEITE 955 (1035)
Q Consensus 922 ~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~e 955 (1035)
++.+-..+..-.++++.|+.+..++++.|+.-+.
T Consensus 84 y~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788899999999999999887654
No 94
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.96 E-value=8.4e+02 Score=30.70 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=17.2
Q ss_pred hhhhhHHHhhcCCH---HHHHHHHHHHHHHHHHHHHHH
Q 001663 872 SELSNVKKAAAMDS---DVLSSEVSKLSRGLGNIGEVV 906 (1035)
Q Consensus 872 ~EL~~VkkAAkVdl---e~L~~dv~kLekgL~kI~eel 906 (1035)
++|...-.-.+++. +.+..|..+|.+.+.++..++
T Consensus 318 d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~ 355 (581)
T KOG0995|consen 318 DELKKQIELQGISGEDVERMNLERNKLKRELNKIQSEL 355 (581)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433344443 334445555666666655444
No 95
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.63 E-value=97 Score=32.32 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001663 886 DVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFS--ESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYF 957 (1035)
Q Consensus 886 e~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~--e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYF 957 (1035)
.....+..+|++++.++++|+.... ..|.|. .+++.=++++++|++++++........++....++
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS------~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAIS------AQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-------TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888776432 134453 35566777777777777777766666666665554
No 96
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=39.87 E-value=41 Score=34.71 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=49.9
Q ss_pred HHHHHHhhCCChHHHHHHHhhhccc-c-------cCCChHHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001663 696 LLESLLKMAPTKEEERKLKEYKDES-L-------TKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETL 767 (1035)
Q Consensus 696 ~Le~Llk~lPT~EEi~~Lkey~gd~-p-------~~L~~aEqFll~L~~IP~~~~RL~allfk~~F~~~l~~L~~~L~~l 767 (1035)
..+.|..+.|+-+|++.+....+.. . ..|.+++..+....++.+| ++ +-+..|...+.++...|..+
T Consensus 39 L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~----n~-~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 39 LESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRW----NL-YKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHH----HH-HhhHhHHHHHHHHHHHHHHH
Confidence 4456667889999988877655432 0 1233444444444444322 22 24567788888888887777
Q ss_pred HHHHHHHHhcHHHHHHHHH
Q 001663 768 EAACEELRNSRMFLKLLEA 786 (1035)
Q Consensus 768 ~~A~~eLr~S~~L~~LL~i 786 (1035)
...--++..-..+++++..
T Consensus 114 ~~v~~q~~~~~D~~~l~~~ 132 (147)
T PF05659_consen 114 IQVDLQLHQLRDIKELLAK 132 (147)
T ss_pred hcchhHHHHHHHHHHHHHH
Confidence 6665555544444444443
No 97
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=39.65 E-value=21 Score=42.60 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=8.1
Q ss_pred cccChhHHHHHHHH
Q 001663 656 RVLDPKKSQNIAIL 669 (1035)
Q Consensus 656 sVLD~KRAQNIsI~ 669 (1035)
.++|-=.+|+|+|.
T Consensus 392 a~~eiinc~~v~iQ 405 (480)
T KOG2675|consen 392 AIVEIINCQDVQIQ 405 (480)
T ss_pred eeeEEeeccceeeE
Confidence 34445566777764
No 98
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=39.29 E-value=7.8e+02 Score=29.86 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=39.5
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHH
Q 001663 922 SESMNRFMKM---AEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLD 983 (1035)
Q Consensus 922 ~e~M~~Fl~~---Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~d 983 (1035)
.++|..+.++ .+++..++|.++..-++.-..+|....|.....+++.++||.-+.+|-..+.
T Consensus 277 ~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~g~s~~ 341 (552)
T KOG2129|consen 277 QEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDFGDSVE 341 (552)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCcee
Confidence 3444444432 3455666777776666666778888877666666777788876666655443
No 99
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.28 E-value=3.2e+02 Score=36.31 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhccccccCC
Q 001663 765 ETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGT 798 (1035)
Q Consensus 765 ~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt 798 (1035)
+.+..|++.|.=+..+...|++| +||++=..+
T Consensus 599 ~~v~~al~Li~yd~~l~~amefv--FG~tlVc~~ 630 (1174)
T KOG0933|consen 599 DNVELALSLIGYDDELKKAMEFV--FGSTLVCDS 630 (1174)
T ss_pred chHHHHHHHhcCCHHHHHHHHHH--hCceEEecC
Confidence 56677888899999999999887 899887654
No 100
>PF15234 LAT: Linker for activation of T-cells
Probab=38.89 E-value=2.4e+02 Score=30.44 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 001663 228 RGDTNCVSPELRPLPPLSQ 246 (1035)
Q Consensus 228 ~~~~k~~spel~plppl~~ 246 (1035)
..|--+.-|+|-|+|=-+|
T Consensus 66 ts~pplsqPDLLpIPRSPQ 84 (230)
T PF15234_consen 66 TSYPPLSQPDLLPIPRSPQ 84 (230)
T ss_pred ccCCCCCCcccccCCCCCC
Confidence 3466677788888875554
No 101
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.67 E-value=1.1e+02 Score=33.15 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001663 885 SDVLSSEVSKLSRGLGNIGEV 905 (1035)
Q Consensus 885 le~L~~dv~kLekgL~kI~ee 905 (1035)
++.+..+|.+|+..|.++.+.
T Consensus 4 ~~~~E~~~~~le~~l~kl~K~ 24 (200)
T cd07637 4 IDEVETDVVEIEAKLDKLVKL 24 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 344555555555555554433
No 102
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=38.54 E-value=2.9e+02 Score=28.03 Aligned_cols=45 Identities=29% Similarity=0.280 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 001663 938 RIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMIN 993 (1035)
Q Consensus 938 ~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~ 993 (1035)
.|+....++.+.-.++++-|.+.. ..|.+|+..|...++..+.-+
T Consensus 100 ~L~~~~~e~eeeSe~lae~fl~g~-----------~d~~~Fl~~f~~~R~~yH~R~ 144 (150)
T PF07200_consen 100 RLQAAASEAEEESEELAEEFLDGE-----------IDVDDFLKQFKEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHHHHHHHHHHC-S-SSSH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-----------CCHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666665321 237899999998888776544
No 103
>PRK11637 AmiB activator; Provisional
Probab=38.13 E-value=4.3e+02 Score=31.54 Aligned_cols=34 Identities=9% Similarity=0.191 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001663 924 SMNRFMKMAEEEIIRIQAHESVALSLVKEITEYF 957 (1035)
Q Consensus 924 ~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYF 957 (1035)
.+..=+...+.+|..+++.+....+.+++.+.+.
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555566666555555555544433
No 104
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.09 E-value=2.4e+02 Score=31.06 Aligned_cols=21 Identities=0% Similarity=0.101 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 001663 975 VRDFLTVLDRVCKEVGMINER 995 (1035)
Q Consensus 975 l~dFl~~~dka~kEv~k~~eR 995 (1035)
++|--+.||++..+.....+|
T Consensus 107 vKe~kK~FdK~s~~~d~al~K 127 (215)
T cd07601 107 IMTLKELFKAASNDHDGVLSK 127 (215)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 445556666666666655444
No 105
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=38.03 E-value=7.6e+02 Score=29.63 Aligned_cols=229 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHcCCCCCCCHH-HHHHHHhhC--CChHHHHHHHhhhcccccCCChHHHHHHHHhCcccH
Q 001663 664 QNIAILLRALNVTIEEVCEALLEGNADTLGTE-LLESLLKMA--PTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFA 740 (1035)
Q Consensus 664 QNIsI~L~klkls~eeI~~AIl~~D~~~L~~E-~Le~Llk~l--PT~EEi~~Lkey~gd~p~~L~~aEqFll~L~~IP~~ 740 (1035)
.+|.++-..++...+++-.+-..+|.....-+ .+..+.+.+ =.-.+...+..+...-...-+..- ..-.+..|+..
T Consensus 122 ~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~i~~~ 200 (412)
T PF04108_consen 122 DSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQSSLGSSPSSSS-SNPLMSTILKE 200 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCCCCccc-ccccHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccccCC
Q 001663 741 FKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGA 820 (1035)
Q Consensus 741 ~~RL~allfk~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs~ 820 (1035)
-.-++ .++-+.++.|..-++.+..|++..-. +--+.
T Consensus 201 l~~le-----~ema~lL~sLt~HfDqC~~a~~~~eg---------------------------------------~~~~~ 236 (412)
T PF04108_consen 201 LHSLE-----QEMASLLESLTNHFDQCVTAVRHTEG---------------------------------------EPMSE 236 (412)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------CCCCh
Q ss_pred CCCccHHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchhhhhHHHhhcCCHHH----HHHHHHHHH
Q 001663 821 DGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDV----LSSEVSKLS 896 (1035)
Q Consensus 821 D~k~TLLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~EL~~VkkAAkVdle~----L~~dv~kLe 896 (1035)
.....+|+.|.+ |. .+|-++..||..+-..-.-..+. |.+....+.
T Consensus 237 ~e~~e~l~Vl~~----------------------Da--------~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~ 286 (412)
T PF04108_consen 237 EERQEMLEVLEN----------------------DA--------QELPDVVKELQERLDEMENNEERTKKLLQSQRDHIR 286 (412)
T ss_pred HHHHHHHHHHHc----------------------ch--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHH
Q 001663 897 RGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVR 976 (1035)
Q Consensus 897 kgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~ 976 (1035)
.-...+.+.+......+. .-..+...+..|....+..-..+.....+ +.+++.||.
T Consensus 287 ~~~~~~~~~~~~l~~~~~--~l~~yl~~~~~~~~~~~~~~~~i~~~~~~----l~~L~~~Y~------------------ 342 (412)
T PF04108_consen 287 ELYNALSEALEELRKFGE--RLPSYLAAFHDFEERWEEEKESIQAYIDE----LEQLCEFYE------------------ 342 (412)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------------
Q ss_pred HHHHHHHHHHHHHHH
Q 001663 977 DFLTVLDRVCKEVGM 991 (1035)
Q Consensus 977 dFl~~~dka~kEv~k 991 (1035)
.|...|+....|+.+
T Consensus 343 ~F~~aY~~LL~Ev~R 357 (412)
T PF04108_consen 343 GFLSAYDSLLLEVER 357 (412)
T ss_pred HHHHHHHHHHHHHHH
No 106
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=37.79 E-value=3.2e+02 Score=24.89 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=39.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 881 AAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITE 955 (1035)
Q Consensus 881 AkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~e 955 (1035)
++.++++|..-..+|...+...+++++.. ..+....|+..++ +|..++.....+...+.++..
T Consensus 17 ~~~s~~~i~~~~~~L~~~i~~~~~eLr~~-----------V~~nY~~fI~as~-~I~~m~~~~~~l~~~l~~l~~ 79 (87)
T PF08700_consen 17 KNSSIKEIRQLENKLRQEIEEKDEELRKL-----------VYENYRDFIEASD-EISSMENDLSELRNLLSELQQ 79 (87)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888888877777643 4455566665554 455666666665555555443
No 107
>PHA03265 envelope glycoprotein D; Provisional
Probab=37.70 E-value=9.7 Score=44.05 Aligned_cols=33 Identities=12% Similarity=0.304 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 001663 120 KLLILAFASVSSALVVGGILVFFYCRKRRQNGL 152 (1035)
Q Consensus 120 ~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~~~ 152 (1035)
..+-+.|..+||.||+++.+.||+||||+..++
T Consensus 348 ~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k 380 (402)
T PHA03265 348 TFVGISVGLGIAGLVLVGVILYVCLRRKKELKK 380 (402)
T ss_pred cccceEEccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 346788889999999998777888888776653
No 108
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=37.39 E-value=5.9e+02 Score=27.95 Aligned_cols=195 Identities=21% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCChHHHHHH---HhhhcccccCCChHHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001663 694 TELLESLLKMAPTKEEERKL---KEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAA 770 (1035)
Q Consensus 694 ~E~Le~Llk~lPT~EEi~~L---key~gd~p~~L~~aEqFll~L~~IP~~~~RL~allfk~~F~~~l~~L~~~L~~l~~A 770 (1035)
.+.+..|.++.|.-+|+... +.|..|. ..|.+-| ...|-..++........+..+
T Consensus 79 ~~l~~~l~~l~~~~~e~~~Yy~~k~Y~~D~--------------------~ak~kel--h~~l~~~~~~~~~a~~~~~~~ 136 (276)
T PF12889_consen 79 KELLPALKELYPLINELDSYYDSKDYKDDN--------------------FAKAKEL--HAKLLAAYEEFKAAYDAFDAA 136 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHTT---------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcCch--------------------hHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccccCCCCCccHHHHHHHHHHHhhcccccCCCCCCC
Q 001663 771 CEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARQSGANQNPN 850 (1035)
Q Consensus 771 ~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs~D~k~TLLhyLv~~I~r~e~~~ls~~n~~~~ 850 (1035)
+..+..-.....|=. +|. .|+..-.+.+ +.+...+
T Consensus 137 l~~~~~~~~~~~l~~-------------------------------lk~-~g~~~~y~~~-~~~~~a~------------ 171 (276)
T PF12889_consen 137 LEKINDERRKEQLEA-------------------------------LKK-EGKMIIYYML-KLMIDAE------------ 171 (276)
T ss_dssp HHHHHHHHH-------------------------------------TTT-TTHHHHHHHH-HHHHHHH------------
T ss_pred HHHHHHHHHhHHHHH-------------------------------Hhh-HHHHHHHHHH-HHHHHHH------------
Q ss_pred CCCchhHHHhhcccccccccchhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHH
Q 001663 851 SSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMK 930 (1035)
Q Consensus 851 s~~~dD~~~~kl~lp~V~~Ls~EL~~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~ 930 (1035)
.+.+.| .=......|...+...+.+|++-++..++......... ....|......|+.
T Consensus 172 ------------------~i~~~l-~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 229 (276)
T PF12889_consen 172 ------------------QIIDEL-QSDDNQKFDMAALDAALAELEKLLKDLKKLTKENYDDE---MLSSFMSSADSFKS 229 (276)
T ss_dssp ------------------HHHHHH-T-TTS--HHHHHHH--HHHHHHHHHHHHTS---TT-H-------HHHHHHHHHHH
T ss_pred ------------------HHHHHH-hhccCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccch---hHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHH
Q 001663 931 MAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVC 986 (1035)
Q Consensus 931 ~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~ 986 (1035)
.+++-|..++. .-.....++-.+... ..+..+.....+.+..|.++.
T Consensus 230 ~~~~~i~~vr~-------~~~~~~~~~~~~~~~--~~~~~l~~~yn~lI~~yN~~~ 276 (276)
T PF12889_consen 230 SAKSFIRRVRD-------LQQSESNWMSGEPTE--GSPEKLLKSYNDLISDYNRLI 276 (276)
T ss_dssp HHHHHHHHHHH--------------------HC--TTSS--HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHH-------hcchhhhhhcccCCC--CCHHHHHHHHHHHHHHhccCC
No 109
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=36.71 E-value=23 Score=46.33 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=8.6
Q ss_pred HHHHHhcHHHHHHHHHHH
Q 001663 771 CEELRNSRMFLKLLEAVL 788 (1035)
Q Consensus 771 ~~eLr~S~~L~~LL~iIL 788 (1035)
+++||.++.++.|..+-.
T Consensus 629 M~QIraCKd~KhliyY~f 646 (2365)
T COG5178 629 MKQIRACKDWKHLIYYAF 646 (2365)
T ss_pred HHHHHHhhhHHHHHHHHh
Confidence 444445555555544443
No 110
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.22 E-value=4.9e+02 Score=34.09 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=14.1
Q ss_pred cccChhHHHHHHHHHhhc
Q 001663 656 RVLDPKKSQNIAILLRAL 673 (1035)
Q Consensus 656 sVLD~KRAQNIsI~L~kl 673 (1035)
.+||.+|-.|+.+.|..|
T Consensus 406 kfLdaq~IknLt~YLe~L 423 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEAL 423 (933)
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 568888888888887766
No 111
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=36.21 E-value=4.2e+02 Score=26.47 Aligned_cols=62 Identities=6% Similarity=0.089 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 887 VLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLV 950 (1035)
Q Consensus 887 ~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~ 950 (1035)
.|..+|..|...+..|+......... .+ ........|...+..+...+..++..++.+....
T Consensus 10 ~I~~~i~~i~~~v~~l~~l~~~~~t~-~~-~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~ 71 (151)
T cd00179 10 EIRGNIDKISEDVEELQKLHSQLLTA-PD-ADPELKQELESLVQEIKKLAKEIKGKLKELEESN 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554433322111 11 2356777777777777777777777766655443
No 112
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=35.95 E-value=38 Score=25.77 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=3.7
Q ss_pred Hhhhhhhcc
Q 001663 141 FFYCRKRRQ 149 (1035)
Q Consensus 141 ~~~~~~r~~ 149 (1035)
+++++||++
T Consensus 25 ~~~~~~rk~ 33 (34)
T TIGR01167 25 GLLLRKRKK 33 (34)
T ss_pred HHHheeccc
Confidence 344444443
No 113
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=35.71 E-value=5.1e+02 Score=27.49 Aligned_cols=9 Identities=22% Similarity=-0.053 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 001663 4 SFCLLISLA 12 (1035)
Q Consensus 4 ~~~~~~~~~ 12 (1035)
.+|++..+|
T Consensus 8 ~~~~~~~ll 16 (163)
T PF06679_consen 8 PHLLAPWLL 16 (163)
T ss_pred cchhHHHHH
Confidence 344444433
No 114
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=35.53 E-value=45 Score=34.52 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 001663 119 QKLLILAFASVSSALVVGGILVFFYCRKRRQN 150 (1035)
Q Consensus 119 ~~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~ 150 (1035)
+.++|+.+.+|+..++++..++ ..|+|||.-
T Consensus 120 klilaisvtvv~~iliii~CLi-ei~shr~a~ 150 (154)
T PF14914_consen 120 KLILAISVTVVVMILIIIFCLI-EICSHRRAS 150 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHhccccc
Confidence 3335555555444444443343 334555543
No 115
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.37 E-value=3.6e+02 Score=29.36 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 001663 975 VRDFLTVLDRVCKEVGMINER 995 (1035)
Q Consensus 975 l~dFl~~~dka~kEv~k~~eR 995 (1035)
+++--+.||++..+.....+|
T Consensus 105 vKe~kK~FdK~s~~yd~al~K 125 (202)
T cd07606 105 VKDARRRFDKASLDYEQARSK 125 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666554443
No 116
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=35.35 E-value=1.8e+02 Score=27.03 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 001663 919 KKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINER 995 (1035)
Q Consensus 919 dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~eR 995 (1035)
+.|...+..=++.+...+..+......+...+.++...|.+-.... ...+.|.... +...+..+.+++..+.+|
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~--~~~~~~~~~~-y~~KL~~ikkrm~~l~~~ 79 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVE--QINEPFDLDP-YVKKLVNIKKRMSNLHER 79 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHhhH-HHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888888888888888888887776533211 1122354444 666666666666554443
No 117
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=34.79 E-value=41 Score=31.55 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 001663 118 SQKLLILAFASVSSALVVGGILVFFYCRKRRQ 149 (1035)
Q Consensus 118 ~~~l~~~ais~~~~~~~~~~~~~~~~~~~r~~ 149 (1035)
.+|.++++..+..+|+++.+++.+-||.++.+
T Consensus 52 ~kK~iiiS~i~s~lalli~~~~G~g~y~~~k~ 83 (84)
T PF09716_consen 52 NKKKIIISTIASGLALLIATALGYGYYKKKKK 83 (84)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45544444444444445555666777766543
No 118
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.71 E-value=2.2e+02 Score=36.50 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 001663 886 DVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREE 965 (1035)
Q Consensus 886 e~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee 965 (1035)
.+|+.|+++|+++|+.-++.+...+. .. ..+..+..+-+.+.+.|-..+..|.+.-..|-.-.-.+. +
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~--------~~-~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt-r-- 615 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELES--------EL-QELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET-R-- 615 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH-H--
Confidence 34555666666666665555443321 01 334444222233444444444444443333333222111 1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 001663 966 AHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISN 1000 (1035)
Q Consensus 966 ~~P~~fF~il~dFl~~~dka~kEv~k~~eR~~~~~ 1000 (1035)
--.++|..|.+=.+.++-+...+++ +|++|++.
T Consensus 616 -iKldLfsaLg~akrq~ei~~~~~~~-~d~ei~~l 648 (697)
T PF09726_consen 616 -IKLDLFSALGDAKRQLEIAQGQLRK-KDKEIEEL 648 (697)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 1246888888777777765555443 55555554
No 119
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.65 E-value=2.5e+02 Score=33.02 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCCCCCC
Q 001663 922 SESMNRFMKMAEEEIIRI-----QAHESVALSLVKEITEYFHGNSARE 964 (1035)
Q Consensus 922 ~e~M~~Fl~~Ae~eI~~L-----q~~~~~a~~~~kel~eYFGED~~ke 964 (1035)
.++++.+.++|-++.+.+ .+-.....-+++++++-|.+|.+.|
T Consensus 269 iDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~kq~l~~~A~d~aie 316 (365)
T KOG2391|consen 269 IDILKSKVREALEKAENLEALDIDEAIECTAPLYKQILECYALDLAIE 316 (365)
T ss_pred hHHHHHHHHHHHhhhccCcCCCchhhhhccchHHHHHHHhhhhhhHHH
Confidence 455666666655555443 2333444556777777776665543
No 120
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=34.45 E-value=2.3e+02 Score=30.97 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001663 885 SDVLSSEVSKLSRGLGNIGEVV 906 (1035)
Q Consensus 885 le~L~~dv~kLekgL~kI~eel 906 (1035)
+-.+..++..+++.+...++.+
T Consensus 153 l~~l~~~l~~l~~~l~~~~~~l 174 (292)
T PF01544_consen 153 LFDLRRELSRLRRSLSPLREVL 174 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHH
Confidence 3445556666666666655555
No 121
>PHA03283 envelope glycoprotein E; Provisional
Probab=34.27 E-value=51 Score=40.31 Aligned_cols=16 Identities=38% Similarity=0.376 Sum_probs=8.7
Q ss_pred HHHHHHhhhhh-hccCC
Q 001663 136 GGILVFFYCRK-RRQNG 151 (1035)
Q Consensus 136 ~~~~~~~~~~~-r~~~~ 151 (1035)
++++++|.|.+ |+.++
T Consensus 414 ~~~l~vw~c~~~r~~~~ 430 (542)
T PHA03283 414 LVALVVWGCILYRRSNR 430 (542)
T ss_pred HHHHhhhheeeehhhcC
Confidence 33444666644 66666
No 122
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.14 E-value=5.8e+02 Score=26.89 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcc-hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 001663 890 SEVSKLSRGLGNIGEVVQLNEAMGMDE-SRKKFSESMNRFMKMAEEE-IIRIQAHESVALSLVKEITEYF 957 (1035)
Q Consensus 890 ~dv~kLekgL~kI~eelq~~e~~~~~e-~~dkF~e~M~~Fl~~Ae~e-I~~Lq~~~~~a~~~~kel~eYF 957 (1035)
..++++..+|..+.+.+..... .++ -.++-.+.++.|+..+--- +..+........+.++.+..|.
T Consensus 17 ~~~~~~~~~l~~l~~ai~~~~~--~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~ 84 (204)
T PF04740_consen 17 SSLKELKEQLESLQKAINQFIS--SESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQ 84 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444444444444433221 122 3466677777777775433 3344444444444444444444
No 123
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=34.06 E-value=9.3 Score=40.48 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 001663 119 QKLLILAFASVSSALVVGG 137 (1035)
Q Consensus 119 ~~l~~~ais~~~~~~~~~~ 137 (1035)
.+.|||+|-+++++++++.
T Consensus 157 ~~~laI~lPvvv~~~~~~~ 175 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALIM 175 (189)
T ss_pred ceeEEEEccHHHHHHHHHH
Confidence 3457777777776544443
No 124
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=33.97 E-value=1.9e+02 Score=32.74 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=31.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001663 915 DESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYF 957 (1035)
Q Consensus 915 ~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYF 957 (1035)
++..|+....+++-+-.|...+..--.....+.....++..|+
T Consensus 61 ~e~ed~l~k~i~Ell~~a~~~~~~~~~l~d~~~~l~~Rh~~~~ 103 (271)
T COG5034 61 EEVEDGLLKEIRELLLKAIYIQKEKSDLADRAEKLLRRHRKLL 103 (271)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456778888888888888776666666777777777777765
No 125
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=33.07 E-value=2.9e+02 Score=30.31 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHH
Q 001663 887 VLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKM 931 (1035)
Q Consensus 887 ~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~ 931 (1035)
.+..+..+|.++++.--+.+... ....-.|.+.|..|++.
T Consensus 23 ~~e~~~~kL~k~~K~Y~~av~~m-----~~~q~~~~e~l~~lY~p 62 (211)
T cd07588 23 KQQASANRLQKDLKNYLNSVRAM-----KQASKTLSETLKELYEP 62 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCC
Confidence 34444455555554433332211 12245666666666643
No 126
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=33.06 E-value=1.7e+02 Score=33.02 Aligned_cols=12 Identities=33% Similarity=0.312 Sum_probs=7.7
Q ss_pred cHHHHHHHHHHH
Q 001663 825 TLLHFVVQEIIR 836 (1035)
Q Consensus 825 TLLhyLv~~I~r 836 (1035)
.||+.|+..+++
T Consensus 134 ~ll~~il~~ivd 145 (318)
T TIGR00383 134 YLLYDIFDAIID 145 (318)
T ss_pred HHHHHHHHHHHh
Confidence 467777666654
No 127
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=32.91 E-value=14 Score=44.31 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhh
Q 001663 133 LVVGGILVFFYC 144 (1035)
Q Consensus 133 ~~~~~~~~~~~~ 144 (1035)
+++|+++++|+|
T Consensus 364 livVv~viv~vc 375 (439)
T PF02480_consen 364 LIVVVGVIVWVC 375 (439)
T ss_dssp ------------
T ss_pred HHHHHHHHhhee
Confidence 333334444444
No 128
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=32.82 E-value=75 Score=38.70 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 001663 118 SQKLLILAFASVSSALVVGGILVFFYCRKRRQNG 151 (1035)
Q Consensus 118 ~~~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~~ 151 (1035)
...++|+++..+++.+++|.|++||.||+|++-+
T Consensus 152 ~~~~~al~~~~~v~~l~~lvi~~~~~~r~~k~~~ 185 (534)
T KOG3653|consen 152 EVLIYALIPLLLVSLLAALVILAFLGYRQRKNAR 185 (534)
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3344555555556666677788899998887665
No 129
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=32.75 E-value=1.4e+02 Score=35.70 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=6.0
Q ss_pred CCHHHHHHHHH
Q 001663 675 VTIEEVCEALL 685 (1035)
Q Consensus 675 ls~eeI~~AIl 685 (1035)
++.++...+++
T Consensus 470 vtkDDaY~~FM 480 (487)
T KOG4672|consen 470 VTKDDAYNAFM 480 (487)
T ss_pred CcchHHHHHHH
Confidence 35556555554
No 130
>PRK09752 adhesin; Provisional
Probab=32.40 E-value=43 Score=44.54 Aligned_cols=8 Identities=0% Similarity=-0.193 Sum_probs=4.3
Q ss_pred cccccccc
Q 001663 608 EMVWDHLR 615 (1035)
Q Consensus 608 ~TIW~~l~ 615 (1035)
.++|..+.
T Consensus 985 ~s~W~R~~ 992 (1250)
T PRK09752 985 QTLNLRVI 992 (1250)
T ss_pred cceEEEee
Confidence 35676543
No 131
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=32.12 E-value=1e+03 Score=29.03 Aligned_cols=50 Identities=24% Similarity=0.427 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 001663 933 EEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMI 992 (1035)
Q Consensus 933 e~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~ 992 (1035)
..+++.+.+++..+.+.++++-+|.... .| ++.- ..-..++++|.|-+..
T Consensus 249 ~~qLe~v~kdi~~a~keL~~m~~~i~~e------KP--~WkK--iWE~EL~~VcEEqqfL 298 (426)
T smart00806 249 KKQLETVQKELETARKELKKMEEYIDIE------KP--IWKK--IWEAELDKVCEEQQFL 298 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc------Ch--HHHH--HHHHHHHHHHHHHHHH
Confidence 4456667777777777778777777421 12 1221 1225788899887733
No 132
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=32.00 E-value=29 Score=40.65 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 001663 122 LILAFASVSSALVVGGILVFFYCRKRRQ 149 (1035)
Q Consensus 122 ~~~ais~~~~~~~~~~~~~~~~~~~r~~ 149 (1035)
.+++|+.|+=.+++|++.+++++||+|+
T Consensus 321 ~i~~vgLG~P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 321 MIMAVGLGVPLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred HHHHHHhhHHHHHHHHhhheEEEecccc
Confidence 4445555666666666665555555544
No 133
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.53 E-value=6.3e+02 Score=26.46 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 927 RFMKMAEEEIIRIQAHESVALSLVKEIT 954 (1035)
Q Consensus 927 ~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~ 954 (1035)
.+.+..+++++.++..++++.+.+.++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666655555554
No 134
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=31.49 E-value=4.9e+02 Score=29.00 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 001663 939 IQAHESVALSLVKEITEYFHG 959 (1035)
Q Consensus 939 Lq~~~~~a~~~~kel~eYFGE 959 (1035)
.+.+..+|..++.++-.+|+.
T Consensus 151 Ae~El~~A~~LL~~v~~~~~~ 171 (264)
T PF06008_consen 151 AEDELKEAEDLLSRVQKWFQK 171 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 445556666666777777753
No 135
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=31.28 E-value=7.4e+02 Score=28.87 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=29.5
Q ss_pred hcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccccCCCCCccHHHHHHH
Q 001663 776 NSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQ 832 (1035)
Q Consensus 776 ~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs~D~k~TLLhyLv~ 832 (1035)
.++.++.|--++-.+|-|+|..-.. .||.=-|=.|-|.+-|.|..+
T Consensus 206 g~~~~k~ikpmlsDL~tYlnkaiPD-----------TrLTikkYlDvKfeYLSYCLK 251 (429)
T KOG3651|consen 206 GSESAKPIKPMLSDLQTYLNKAIPD-----------TRLTIKKYLDVKFEYLSYCLK 251 (429)
T ss_pred ccchhhhhhHHHHHHHHHHhccCCc-----------chhhhHHhhhhhHHHHHHHHh
Confidence 5666777777888899999975331 122222334667788888754
No 136
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.16 E-value=3.3e+02 Score=31.11 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=20.2
Q ss_pred hhhhHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q 001663 873 ELSNVKKAAAMDSDVLSSEVSKLSRGLGNIG 903 (1035)
Q Consensus 873 EL~~VkkAAkVdle~L~~dv~kLekgL~kI~ 903 (1035)
+|..+++.-+.-++.+...+++++..|+++.
T Consensus 102 el~e~Ekvlk~aIq~i~~~~q~~~~~Lnnva 132 (338)
T KOG3647|consen 102 ELLEVEKVLKSAIQAIQVRLQSSRAQLNNVA 132 (338)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666555556677777777777777665
No 137
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=30.93 E-value=4.4e+02 Score=26.90 Aligned_cols=69 Identities=12% Similarity=0.287 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001663 884 DSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFH 958 (1035)
Q Consensus 884 dle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFG 958 (1035)
+-..|...+++++..+.++-..+...+ ...++|.+.+.+ +++....+.+++..+.+....++.+-+..-
T Consensus 50 ~Q~~L~~riKevd~~~~~l~~~~~erq-----k~~~k~ae~L~k-v~els~~L~~~~~lL~~~v~~ie~LN~~LP 118 (131)
T PF10158_consen 50 DQNALAKRIKEVDQEIAKLLQQMVERQ-----KRFAKFAEQLEK-VNELSQQLSRCQSLLNQTVPSIETLNEILP 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 444455555555555555443332221 113455555544 444445555555555554444444444443
No 138
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.86 E-value=3.1e+02 Score=25.58 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=28.2
Q ss_pred hHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001663 876 NVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNE 910 (1035)
Q Consensus 876 ~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e 910 (1035)
.+.+-..++..++...+..|+..|++++..++...
T Consensus 14 ~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lp 48 (83)
T PF07544_consen 14 QISKDPPLSSKDLDTATGSLKHKLQKARAAIRELP 48 (83)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333678889999999999999999999887643
No 139
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=30.83 E-value=24 Score=34.08 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=3.6
Q ss_pred hhhccCC
Q 001663 145 RKRRQNG 151 (1035)
Q Consensus 145 ~~r~~~~ 151 (1035)
|.|+++.
T Consensus 88 Rer~~~~ 94 (101)
T PF06024_consen 88 RERQKSI 94 (101)
T ss_pred ecccccc
Confidence 5555543
No 140
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=30.79 E-value=47 Score=35.19 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 001663 118 SQKLLILAFASVSSALVVGGILVFFYCRKRRQN 150 (1035)
Q Consensus 118 ~~~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~ 150 (1035)
...+||-.||||++|||-. ++.||.|.||+.=
T Consensus 113 ~~g~IaGIvsav~valvGA-vsSyiaYqkKKlC 144 (169)
T PF12301_consen 113 EAGTIAGIVSAVVVALVGA-VSSYIAYQKKKLC 144 (169)
T ss_pred ccchhhhHHHHHHHHHHHH-HHHHHHHHhhccc
Confidence 5677888888887755544 6668888766643
No 141
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=30.63 E-value=4e+02 Score=26.76 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001663 886 DVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEY 956 (1035)
Q Consensus 886 e~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eY 956 (1035)
+.+..++..++-.+.+.+-.++.+... -+.-+.....+..-++.++.+|..|+..+..+....+.-.+|
T Consensus 49 e~~l~~l~~~e~~~~k~q~~~~~n~~e--~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ey 117 (139)
T PF05615_consen 49 ERLLKELAQFEFSILKSQLILEMNKRE--RENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEY 117 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555554444332210 012355667777777788888888888887776665555543
No 142
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=30.51 E-value=54 Score=42.01 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC
Q 001663 128 SVSSALVVGGILVFFYCRKRRQN 150 (1035)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~r~~~ 150 (1035)
.+++.++++++.+++|||||+.+
T Consensus 280 G~~~livl~lL~vLl~yCrrkc~ 302 (807)
T PF10577_consen 280 GGTALIVLILLCVLLCYCRRKCL 302 (807)
T ss_pred HHHHHHHHHHHHHHHHhhhcccC
Confidence 33333333334444555555433
No 143
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.50 E-value=3.2e+02 Score=34.83 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001663 918 RKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNS 961 (1035)
Q Consensus 918 ~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~ 961 (1035)
.+.+.+....+++.|.+...+|...+..+.+.+..++.-.|+-.
T Consensus 45 e~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~ 88 (660)
T KOG4302|consen 45 EQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPS 88 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 35577777889999999999999999999999999999888753
No 144
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=30.35 E-value=5.9e+02 Score=30.01 Aligned_cols=41 Identities=12% Similarity=0.308 Sum_probs=24.4
Q ss_pred HHHHHHHhccccccCCCCCceeeeccccccccccccCCCCCccHHHHHHHHHH
Q 001663 783 LLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEII 835 (1035)
Q Consensus 783 LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs~D~k~TLLhyLv~~I~ 835 (1035)
+++-+|.|||-|-- +..+.+|.-.+-.+ +.+||+-|...++
T Consensus 65 ~ikq~Lri~Np~~m-----------~~gm~dLfLaqpfG-~~sLlQrifs~~L 105 (341)
T PF12825_consen 65 VIKQILRITNPATM-----------MKGMMDLFLAQPFG-GRSLLQRIFSMVL 105 (341)
T ss_pred HHHHHHhcCCHHHH-----------HHHHHHHHccCCCC-cCcHHHHHHHHHH
Confidence 46677888875432 11133343345544 5799999987654
No 145
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.32 E-value=59 Score=28.41 Aligned_cols=30 Identities=23% Similarity=0.090 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 001663 122 LILAFASVSSALVVGGILVFFYCRKRRQNG 151 (1035)
Q Consensus 122 ~~~ais~~~~~~~~~~~~~~~~~~~r~~~~ 151 (1035)
+.++++.++.++++.++..+.++|+|++.+
T Consensus 22 l~il~~f~~G~llg~l~~~~~~~~~r~~~~ 51 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLSLPSRLRLRRRIR 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677766666666555556665544
No 146
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=30.29 E-value=2.4e+02 Score=36.36 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=31.3
Q ss_pred hhHHHhhcccccccccchhhhhHHHhhcC------CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001663 855 DDAKCRKLGLQVVSGLSSELSNVKKAAAM------DSDVLSSEVSKLSRGLGNIGEVVQLN 909 (1035)
Q Consensus 855 dD~~~~kl~lp~V~~Ls~EL~~VkkAAkV------dle~L~~dv~kLekgL~kI~eelq~~ 909 (1035)
||.++.+| +-+|.....-|..|....+| .++-|..|...|++.|+-+...++..
T Consensus 354 ~DsE~qRL-itEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreq 413 (861)
T PF15254_consen 354 EDSEVQRL-ITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQ 413 (861)
T ss_pred chHHHHHH-HHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55554443 22333333444444443333 35678888899999998887666543
No 147
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=30.08 E-value=3.7e+02 Score=23.35 Aligned_cols=26 Identities=4% Similarity=0.120 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001663 917 SRKKFSESMNRFMKMAEEEIIRIQAH 942 (1035)
Q Consensus 917 ~~dkF~e~M~~Fl~~Ae~eI~~Lq~~ 942 (1035)
..+.|.+.+..|...+..-+..|...
T Consensus 45 a~~af~~~~~~~~~~~~~~~~~L~~~ 70 (86)
T PF06013_consen 45 AADAFQDKFEEWNQAFRQLNEALEEL 70 (86)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778877777776666555444433
No 148
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.07 E-value=3.1e+02 Score=24.16 Aligned_cols=19 Identities=11% Similarity=0.351 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001663 887 VLSSEVSKLSRGLGNIGEV 905 (1035)
Q Consensus 887 ~L~~dv~kLekgL~kI~ee 905 (1035)
+|..++.+++..+..++.+
T Consensus 4 elEn~~~~~~~~i~tvk~e 22 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKE 22 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555444444433
No 149
>PRK04654 sec-independent translocase; Provisional
Probab=29.81 E-value=4.1e+02 Score=29.34 Aligned_cols=68 Identities=4% Similarity=0.016 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001663 888 LSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNS 961 (1035)
Q Consensus 888 L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~ 961 (1035)
|...++++++.++.+++++...- ..+.+.+.|+++....++--..|++-..++++.-..+-.|++.+.
T Consensus 32 lGk~irk~R~~~~~vk~El~~El------~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~~~~~~~ 99 (214)
T PRK04654 32 AGLWVRRARMQWDSVKQELEREL------EAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALHDDVSRDI 99 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 44556666666666666554321 123344444444332222222333333333333444446776654
No 150
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=29.74 E-value=62 Score=31.40 Aligned_cols=18 Identities=39% Similarity=0.373 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 001663 128 SVSSALVVGGILVFFYCRK 146 (1035)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~ 146 (1035)
+|++|+.++.++ |||-|+
T Consensus 27 sVvvavGl~aGL-fFcvR~ 44 (106)
T PF14654_consen 27 SVVVAVGLFAGL-FFCVRN 44 (106)
T ss_pred HHHHHHHHHHHH-HHHhhh
Confidence 344445555555 555544
No 151
>PF15120 DUF4561: Domain of unknown function (DUF4561)
Probab=29.65 E-value=1.8e+02 Score=31.07 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcC
Q 001663 887 VLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEA 966 (1035)
Q Consensus 887 ~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~ 966 (1035)
++.+.+..|+..++.++.+. -.|..++..--+.|.+++.-+... ..+.+.++.+|-+. .
T Consensus 3 e~~~~L~~lE~~Yk~F~qQQ------------ftFi~ALer~re~a~~~~~pV~tI-----~QV~~y~eh~~~ns----t 61 (171)
T PF15120_consen 3 EVRQQLKSLEQRYKLFQQQQ------------FTFIAALERCRENAHDRTRPVSTI-----GQVQKYMEHHCNNS----T 61 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhchhcccCCccccccH-----HHHHHHHHHHhccc----c
Confidence 34445555666555544322 346666665555555544443211 12333333334222 1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHh
Q 001663 967 HPFRIFMVVRDFLTVLDRVCKEVGMI 992 (1035)
Q Consensus 967 ~P~~fF~il~dFl~~~dka~kEv~k~ 992 (1035)
+ -++|.+|-+.++.+.+.|..+...
T Consensus 62 D-rril~~FL~iv~dL~~l~~~~~~~ 86 (171)
T PF15120_consen 62 D-RRILEMFLDIVRDLSRLCQQLESL 86 (171)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 378888888888888888877643
No 152
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.57 E-value=1.8e+03 Score=31.24 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Q 001663 755 SEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTG 791 (1035)
Q Consensus 755 ~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiG 791 (1035)
..++++...|..+....++|+.+..+..+++.++..+
T Consensus 230 ~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~ 266 (1486)
T PRK04863 230 KAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITES 266 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhh
Confidence 3478899999999999999999999999999886543
No 153
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=29.55 E-value=7.9e+02 Score=27.03 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001663 929 MKMAEEEIIRIQAHESVALSLVKEITEY 956 (1035)
Q Consensus 929 l~~Ae~eI~~Lq~~~~~a~~~~kel~eY 956 (1035)
+..|++++...++.+..+++.+++-+=.
T Consensus 146 L~kae~el~~a~~~Ye~lN~~Lk~ELP~ 173 (224)
T cd07591 146 LPRAEKELDEAKEVYETLNDQLKTELPQ 173 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456666777777776666655444433
No 154
>PHA03246 large tegument protein UL36; Provisional
Probab=29.44 E-value=2.2e+03 Score=32.13 Aligned_cols=79 Identities=11% Similarity=0.213 Sum_probs=54.0
Q ss_pred hhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 874 LSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAM---GMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLV 950 (1035)
Q Consensus 874 L~~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~---~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~ 950 (1035)
|..|+++..+|.+.+. . |+..+..++..... +..+.-..|.+.+.+.+ ..+.+++.|+.++..++..+
T Consensus 1730 L~~vEet~ELDvqAVe-W-------L~hAr~IIDSHpLT~rIDg~GPm~~yaeRIDaL~-~LR~rLd~Lr~~L~~AEaaW 1800 (3095)
T PHA03246 1730 LTKVEETKELDTQTVE-W-------LKHAESVIDSHDLTVRIDESGPMTIYAERIDALV-RLENRLAELKSELALAEVAW 1800 (3095)
T ss_pred HHHhhhccccCHHHHH-H-------HHHHHHHhccCccccccCCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhH
Confidence 6788888888887652 2 23333344333211 11133467888887754 56689999999999999999
Q ss_pred HHHHHhccCCC
Q 001663 951 KEITEYFHGNS 961 (1035)
Q Consensus 951 kel~eYFGED~ 961 (1035)
.++|..|+-+-
T Consensus 1801 DeaW~~F~r~~ 1811 (3095)
T PHA03246 1801 DDTWSTFIHDK 1811 (3095)
T ss_pred HHHHHHHhhcc
Confidence 99999998653
No 155
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=29.39 E-value=4.5e+02 Score=29.09 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCCcC-CcchhhHHHHHHHHHHHHHHHH
Q 001663 918 RKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGN------SAREEA-HPFRIFMVVRDFLTVLDRVCKE 988 (1035)
Q Consensus 918 ~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED------~~kee~-~P~~fF~il~dFl~~~dka~kE 988 (1035)
.|.|++..+.|+...+..|..+......|...-++++.-||.- -..++. ...++|.-+.++...+++....
T Consensus 21 ~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~L~kals~lae~~Ek~~~l~~r 98 (218)
T cd07663 21 VDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTVIKKYLLKVAELFEKLRKVEDR 98 (218)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999888888888888888777641 111221 2345666666666655554443
No 156
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.22 E-value=3.2e+02 Score=34.52 Aligned_cols=75 Identities=9% Similarity=0.161 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 001663 919 KKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHG-NSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINE 994 (1035)
Q Consensus 919 dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGE-D~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~e 994 (1035)
+.-.++++.+++..+.++..|+.+......-+.+-.+-.-+ ...++ .+..+-..-++.+-...+.+..|++.+.+
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~-~e~~~~~~~ik~~r~~~k~~~~e~~~Kee 468 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRE-SESKQKLQEIKELREEIKEIEEEIRQKEE 468 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44458889999999999998888877654433222221111 11111 12234566777888888888888876655
No 157
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=29.16 E-value=8.3e+02 Score=27.13 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHH
Q 001663 923 ESMNRFMKMAEEEIIR----IQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGM 991 (1035)
Q Consensus 923 e~M~~Fl~~Ae~eI~~----Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k 991 (1035)
..|-.++.+.+.++.. .++.......++.++.+|||...+- .+ .+|=..|.+.-..-++..|+.++
T Consensus 131 ~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDp--rd-prF~eml~~kEkeeKKk~K~aKk 200 (217)
T PF10147_consen 131 AKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDP--RD-PRFQEMLQEKEKEEKKKKKEAKK 200 (217)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCC--CC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544 3444444556789999999975332 12 24555555555555555555553
No 158
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.65 E-value=3.6e+02 Score=29.42 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--chhhhHHHHHHHHHH
Q 001663 885 SDVLSSEVSKLSRGLGNIGEVVQLNEAMGMD--ESRKKFSESMNRFMK 930 (1035)
Q Consensus 885 le~L~~dv~kLekgL~kI~eelq~~e~~~~~--e~~dkF~e~M~~Fl~ 930 (1035)
++.+..+|.+|+..|+++.+.+...-..+.+ .....|...|..|-.
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~ 51 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAH 51 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556666666666655443322111110 124667777777755
No 159
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=28.60 E-value=3.7e+02 Score=26.78 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001663 888 LSSEVSKLSRGLGNIGEVVQ 907 (1035)
Q Consensus 888 L~~dv~kLekgL~kI~eelq 907 (1035)
|.+.+..|.++++++++.+.
T Consensus 6 ~~~q~~~l~~~v~~lRed~r 25 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIR 25 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444
No 160
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=28.60 E-value=59 Score=34.14 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcc
Q 001663 126 FASVSSALVVGGILVFFYCRKRRQ 149 (1035)
Q Consensus 126 is~~~~~~~~~~~~~~~~~~~r~~ 149 (1035)
|.+++.|++|..+++||..|+-|+
T Consensus 154 IG~~VlA~~VA~L~~~F~RR~~rr 177 (215)
T PF05084_consen 154 IGAVVLAVSVAMLTWFFLRRTGRR 177 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 344444455555666776544433
No 161
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=28.56 E-value=9.1e+02 Score=27.77 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=21.2
Q ss_pred HHHHHHHHHhccCCCCCCcCCcc----hhhHHHHHHHHHHHHHHH
Q 001663 947 LSLVKEITEYFHGNSAREEAHPF----RIFMVVRDFLTVLDRVCK 987 (1035)
Q Consensus 947 ~~~~kel~eYFGED~~kee~~P~----~fF~il~dFl~~~dka~k 987 (1035)
.+..++|..=|+.+.=..|+.-. ++|..+..|+..+..-++
T Consensus 110 ~~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~Le 154 (277)
T PF15003_consen 110 DRLRQRLQKPYCQENLPVEAQYHRYVVELLELAASFIEKLEEHLE 154 (277)
T ss_pred HHHHHHHHhhhhhcCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666656654332233222 455666677766655555
No 162
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=28.55 E-value=2.5e+02 Score=28.13 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 885 SDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEIT 954 (1035)
Q Consensus 885 le~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~ 954 (1035)
.+.+.....++...+..+...+...-.....+..+...+.+..|.++...+++.|+.+...+.+...+..
T Consensus 41 ~~~~~~~ae~~~~~~~~~a~~~s~~~a~~~~~~~~~ik~~v~~~~e~~q~~~~~l~~ei~~~~~~~sd~~ 110 (115)
T COG4980 41 GDALFELAEDKGTDILMIADKLSKESAETLKDQGGEIKESVKKWKEDIQPEIERLKSEIEDLQEAISDET 110 (115)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433221111112335778888888888888888888888777766655443
No 163
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=28.53 E-value=7.9e+02 Score=27.38 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=41.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001663 881 AAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHG 959 (1035)
Q Consensus 881 AkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGE 959 (1035)
.+..++.+..++..|...+..+.+.+..... ..+........-+..|+.-...++.....+.....++. +|++
T Consensus 43 ~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~-----~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~-~l~~ 115 (264)
T PF06008_consen 43 QKQQLDPLEKELESLEQDVENLQEKATKVSR-----KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVE-SLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCc
Confidence 4445566666677777777776655544321 23445555555555666555555555555555555555 4455
No 164
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=28.38 E-value=1.9e+02 Score=31.91 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHhccCCC
Q 001663 918 RKKFSESMNRFMKMAEEEIIRIQAHESV-ALS--LVKEITEYFHGNS 961 (1035)
Q Consensus 918 ~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~-a~~--~~kel~eYFGED~ 961 (1035)
...+...+.+|-..+...+.+|+..+.+ -.+ ...+++.+||-|.
T Consensus 169 ~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~~e~~~~TM~eL~~~l~ID~ 215 (221)
T PF10376_consen 169 LEQLQSLIKKWRSASQEALYELQSEMSEEEGEKFTMGELIKRLGIDY 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHhCCCc
Confidence 3467777778888888877777766554 111 3567777777654
No 165
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=28.31 E-value=4.7e+02 Score=27.14 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 001663 970 RIFMVVRDFLTVLDRVCKEVGMIN 993 (1035)
Q Consensus 970 ~fF~il~dFl~~~dka~kEv~k~~ 993 (1035)
.+..-+..|+..++.+.+.+++-.
T Consensus 118 ~vi~pl~~~~~~~~~i~~~~kkr~ 141 (229)
T PF03114_consen 118 TVIDPLKEFLKEFKEIKKLIKKRE 141 (229)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 355556777766666555555433
No 166
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=28.19 E-value=28 Score=36.03 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHhhhhhhc
Q 001663 119 QKLLILAFASVSSALVVGG-ILVFFYCRKRR 148 (1035)
Q Consensus 119 ~~l~~~ais~~~~~~~~~~-~~~~~~~~~r~ 148 (1035)
+.+++|.|+..+ |+|++ |-.+|||.||-
T Consensus 9 sv~i~igi~Ll~--lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 9 SVAISIGISLLL--LLLLCGIGCVWHWKHRD 37 (158)
T ss_pred hHHHHHHHHHHH--HHHHHhcceEEEeeccC
Confidence 333444444444 33333 33366665543
No 167
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=27.94 E-value=5.3e+02 Score=28.65 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=7.3
Q ss_pred hcCCHHHHHHHHHH
Q 001663 881 AAMDSDVLSSEVSK 894 (1035)
Q Consensus 881 AkVdle~L~~dv~k 894 (1035)
.++|+|....-+++
T Consensus 145 rRLd~D~~K~r~~k 158 (220)
T cd07617 145 RRLDLDACKARLKK 158 (220)
T ss_pred HHHHHHHHHHHHhc
Confidence 34566655554444
No 168
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=27.82 E-value=6.2e+02 Score=25.64 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 918 RKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEIT 954 (1035)
Q Consensus 918 ~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~ 954 (1035)
.+...+.+..=.+..+-+|..|+.+.+...+.|+++-
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666677777776666666665543
No 169
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=27.69 E-value=91 Score=35.04 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHH
Q 001663 919 KKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLD 983 (1035)
Q Consensus 919 dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~d 983 (1035)
-...+.+..++++..+.+..+...+ +..++....|+ |+..+...+|.+++.|+..|+
T Consensus 100 ~~~~~ll~~l~~~~~~~l~~~~~~f------v~~~i~~~~gE--kDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 100 YAVYQLLDSLLENHREALQSMGDDF------VYGFIQLIDGE--KDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHHHHhHHHHHhchhHH------HHHHHHHhccC--CCHHHHHHHHHHHHHHHHhcc
Confidence 4466777777777666653333222 23344443332 222344678988888888888
No 170
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=27.35 E-value=1.5e+02 Score=35.32 Aligned_cols=6 Identities=33% Similarity=0.899 Sum_probs=2.5
Q ss_pred cccccC
Q 001663 270 EEFYSP 275 (1035)
Q Consensus 270 ~~fysp 275 (1035)
..||+|
T Consensus 217 ~~f~~p 222 (487)
T KOG4672|consen 217 QDFRVP 222 (487)
T ss_pred hhcccc
Confidence 334443
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=27.16 E-value=2.8e+02 Score=32.62 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=11.4
Q ss_pred ccCCHHHHHHHhhccCC
Q 001663 619 FKLNEEMIETLFIVNTP 635 (1035)
Q Consensus 619 ~~LD~~~LE~LF~~k~~ 635 (1035)
+-|-+.+||++...+.+
T Consensus 355 ~plSeAEFEdiM~RNra 371 (498)
T KOG4849|consen 355 FPLSEAEFEDIMTRNRA 371 (498)
T ss_pred ccchHHHHHHHHhhcch
Confidence 45667788887766543
No 172
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=27.15 E-value=67 Score=30.22 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=2.2
Q ss_pred HHHHHHhhhhhhccCCC
Q 001663 136 GGILVFFYCRKRRQNGL 152 (1035)
Q Consensus 136 ~~~~~~~~~~~r~~~~~ 152 (1035)
+-..+|..|||-+++++
T Consensus 22 vW~iv~ieYrk~~rqrk 38 (81)
T PF00558_consen 22 VWTIVYIEYRKIKRQRK 38 (81)
T ss_dssp HHHHH------------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33455666777666654
No 173
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=27.02 E-value=2.3e+02 Score=35.22 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001663 922 SESMNRFMKMAEEEIIRIQAHESVALSLVKEITEY 956 (1035)
Q Consensus 922 ~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eY 956 (1035)
.+.++.-+..++.++.+|+...+++..+++++++-
T Consensus 116 iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 116 IEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 35677788888999999999999999999999874
No 174
>PHA03286 envelope glycoprotein E; Provisional
Probab=26.97 E-value=67 Score=38.67 Aligned_cols=17 Identities=18% Similarity=0.131 Sum_probs=9.6
Q ss_pred HHHHhhhhhhccCCCcc
Q 001663 138 ILVFFYCRKRRQNGLLY 154 (1035)
Q Consensus 138 ~~~~~~~~~r~~~~~~~ 154 (1035)
+.+..+|||||+||+..
T Consensus 409 ~~~~~~~~r~~~~r~~~ 425 (492)
T PHA03286 409 LCIAGLYRRRRRHRTNG 425 (492)
T ss_pred HHhHhHhhhhhhhhccc
Confidence 33344557777777533
No 175
>PRK14156 heat shock protein GrpE; Provisional
Probab=26.78 E-value=3.5e+02 Score=29.03 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=49.4
Q ss_pred CHHHHHHHHhhCCChHHHHHHHhhhcccccCCChHHHHHHHHhCcccHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHH
Q 001663 693 GTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDA---MLYITNFESEVEYLKKSFETLEA 769 (1035)
Q Consensus 693 ~~E~Le~Llk~lPT~EEi~~Lkey~gd~p~~L~~aEqFll~L~~IP~~~~RL~a---llfk~~F~~~l~~L~~~L~~l~~ 769 (1035)
+.+.++....-.....+++.+++-..+ | -|+|+....++.+|+.|++- ...+......+.+|.+-++.|..
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~l~~e~~e----l--kd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLer 92 (177)
T PRK14156 19 TEETVEEVVEETPEKSELELANERADE----F--ENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLER 92 (177)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 456666666666666666666554332 1 47888888889888887753 23344455556777777888877
Q ss_pred HHHHH
Q 001663 770 ACEEL 774 (1035)
Q Consensus 770 A~~eL 774 (1035)
|.+..
T Consensus 93 Al~~~ 97 (177)
T PRK14156 93 ALAVE 97 (177)
T ss_pred HHhCc
Confidence 76543
No 176
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=26.72 E-value=9.3e+02 Score=26.90 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHH----HHHHHHHHHHhh
Q 001663 932 AEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTV----LDRVCKEVGMIN 993 (1035)
Q Consensus 932 Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~----~dka~kEv~k~~ 993 (1035)
+++++...++++.+..+....++.=+-+. + -++-..|.+|+.. +++|...+..++
T Consensus 168 ~e~elr~ae~efees~E~a~~~m~~i~~~------~-~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~ 226 (229)
T cd07616 168 AEQELRITQSEFDRQAEITRLLLEGISST------H-AHHLRCLNDFVEAQMTYYAQCYQYMLDLQ 226 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhc------C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777778888887777777776655431 1 1345556666643 445544444443
No 177
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.61 E-value=6.3e+02 Score=29.25 Aligned_cols=37 Identities=5% Similarity=0.045 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 918 RKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEIT 954 (1035)
Q Consensus 918 ~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~ 954 (1035)
.......|..-+.....+-..|+..++.+.+...+.-
T Consensus 73 ~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~ 109 (297)
T KOG0810|consen 73 DKELKRKLESLVDEIRRRARKIKTKLKALEKENEADE 109 (297)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666666666666666666666666655544433
No 178
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=26.46 E-value=2.7e+02 Score=32.91 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhh
Q 001663 969 FRIFMVVRDFLTVLDRVCKEVGMINE 994 (1035)
Q Consensus 969 ~~fF~il~dFl~~~dka~kEv~k~~e 994 (1035)
+.++.+++-|....+-+.++++|.+-
T Consensus 300 fSiYCvwKif~s~inIvFdrvGk~DP 325 (462)
T KOG2417|consen 300 FSIYCVWKIFMSLINIVFDRVGKVDP 325 (462)
T ss_pred hHHHHHHHHHHHHHHHHhhhccCcCC
Confidence 45788899999999999999987643
No 179
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=26.45 E-value=58 Score=41.51 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhhhh
Q 001663 134 VVGGILVFFYCRKR 147 (1035)
Q Consensus 134 ~~~~~~~~~~~~~r 147 (1035)
++|+.++|+++|||
T Consensus 858 v~LaAla~lLrRRr 871 (872)
T COG3889 858 VGLAALALLLRRRR 871 (872)
T ss_pred HHHHHHHHHHHhhc
Confidence 33445556665554
No 180
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=26.41 E-value=5.9e+02 Score=32.78 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=19.2
Q ss_pred CcchhhH-HHHHHHHHHHHHHHHHHHhhhhhcccc
Q 001663 967 HPFRIFM-VVRDFLTVLDRVCKEVGMINERTIISN 1000 (1035)
Q Consensus 967 ~P~~fF~-il~dFl~~~dka~kEv~k~~eR~~~~~ 1000 (1035)
+-.+++. ++.+....++.+.+.+-+++|+..-.-
T Consensus 123 E~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp 157 (683)
T PF08580_consen 123 EWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSP 157 (683)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3334443 334555556677776767777655544
No 181
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.28 E-value=1.1e+02 Score=33.83 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC
Q 001663 932 AEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISNAHKFPV 1006 (1035)
Q Consensus 932 Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~eR~~~~~a~~f~~ 1006 (1035)
.+.+|+.|-++...+.+...+++.--+.++... ....+=+.||.|.-..|.++|+-+..++||+...+...-..
T Consensus 56 ~~~eie~LLeql~~vndsm~~~~~s~a~~aa~~-htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~ 129 (231)
T KOG3208|consen 56 LENEIEGLLEQLQDVNDSMNDCASSPANSAAVM-HTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADI 129 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444444444444444332222222221 12245688999999999999999999999877665443333
No 182
>PRK09039 hypothetical protein; Validated
Probab=26.26 E-value=3.3e+02 Score=31.89 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001663 884 DSDVLSSEVSKLSRGLGNIGEVVQLNE 910 (1035)
Q Consensus 884 dle~L~~dv~kLekgL~kI~eelq~~e 910 (1035)
++..|..+|..|+..+..++.++...+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776544
No 183
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=26.26 E-value=8.4e+02 Score=28.55 Aligned_cols=72 Identities=14% Similarity=0.322 Sum_probs=29.0
Q ss_pred hhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 874 LSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESV 945 (1035)
Q Consensus 874 L~~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~ 945 (1035)
|..+++.++...+...+++..-..-+...++.++..+..-.++..-.|.......+.++.+++...+.....
T Consensus 74 lk~~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~ 145 (426)
T KOG2008|consen 74 LKRVERQARLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTR 145 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333333333333333333344444433322222222334444444455555555444444333
No 184
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.17 E-value=3.5e+02 Score=33.43 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=6.6
Q ss_pred HHHHHHHhcHHHHHHH
Q 001663 769 AACEELRNSRMFLKLL 784 (1035)
Q Consensus 769 ~A~~eLr~S~~L~~LL 784 (1035)
.|+..+=+...+..+|
T Consensus 43 ~a~~~~p~~~~~~~~l 58 (507)
T PF05600_consen 43 AAIQDMPEHDEIVQLL 58 (507)
T ss_pred HHHHhCcchHHHHHhc
Confidence 4444444444443333
No 185
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=26.12 E-value=2.2e+02 Score=31.46 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001663 932 AEEEIIRIQAHESVALSLVKEITEYFHG 959 (1035)
Q Consensus 932 Ae~eI~~Lq~~~~~a~~~~kel~eYFGE 959 (1035)
.++++...++.+.++.+.....+.=|-+
T Consensus 155 ~eeEl~~Ae~kfe~s~E~a~~~M~~il~ 182 (223)
T cd07592 155 PDEELKQAEEKFEESKELAENSMFNLLE 182 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777777766666654
No 186
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=26.04 E-value=84 Score=36.35 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 001663 120 KLLILAFASVSSALVVGGILVFFYCRKRRQNG 151 (1035)
Q Consensus 120 ~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~~ 151 (1035)
.|++|++.+|+.+++++++. +.|||-+|..+
T Consensus 199 ~lv~Iv~~cvaG~aAliva~-~cW~Rlqr~~r 229 (341)
T PF06809_consen 199 TLVLIVVCCVAGAAALIVAG-YCWYRLQREIR 229 (341)
T ss_pred eeehhHHHHHHHHHHHHHhh-heEEEeccccc
Confidence 44444444444433333333 33334444444
No 187
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=26.03 E-value=1.5e+03 Score=30.85 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=12.0
Q ss_pred HHHHHHHHhhCCChHHHHH
Q 001663 694 TELLESLLKMAPTKEEERK 712 (1035)
Q Consensus 694 ~E~Le~Llk~lPT~EEi~~ 712 (1035)
.+.|+..+.-+|+.++...
T Consensus 986 ~~~L~kaLA~FP~d~qWSa 1004 (1439)
T PF12252_consen 986 MDMLQKALAAFPSDKQWSA 1004 (1439)
T ss_pred HHHHHHHHHhCCCcccchh
Confidence 5566666677777766543
No 188
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=25.97 E-value=7.5e+02 Score=27.38 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=18.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 001663 752 NFESEVEYLKKSFETLEAACEELR 775 (1035)
Q Consensus 752 ~F~~~l~~L~~~L~~l~~A~~eLr 775 (1035)
+|++.+.++...++....+++.|.
T Consensus 4 ~ld~df~~le~~~d~~~~~~~~l~ 27 (223)
T cd07592 4 KLDDEFLEMERKTDATSKLVEDLI 27 (223)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888887764
No 189
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=25.74 E-value=7.6e+02 Score=27.94 Aligned_cols=61 Identities=11% Similarity=0.112 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCC--c--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 886 DVLSSEVSKLSRGLGNIGEVVQLNEAMGM--D--ESRKKFSESMNRFMKMAEEEIIRIQAHESVA 946 (1035)
Q Consensus 886 e~L~~dv~kLekgL~kI~eelq~~e~~~~--~--e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a 946 (1035)
+.|.+.++.|..+|+.|.+.+........ + -.-.+....|..=+.+.+...-.+++..+.+
T Consensus 181 ~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i 245 (254)
T KOG2196|consen 181 ENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKI 245 (254)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34555566666666666655543321100 0 0123444455554555555544454444443
No 190
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=25.43 E-value=6.8e+02 Score=24.89 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 001663 930 KMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMI 992 (1035)
Q Consensus 930 ~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~ 992 (1035)
..+++++...++.+..+...+..-+.-|.+.. -..|-..|..|+......+++..+.
T Consensus 131 ~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~------~~~~~~~L~~~~~~q~~~~~~~~~~ 187 (194)
T cd07307 131 AEAEEELQEAKEKYEELREELIEDLNKLEEKR------KELFLSLLLSFIEAQSEFFKEVLKI 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44455555555555555554444444443321 1235566777777766666666554
No 191
>PRK09546 zntB zinc transporter; Reviewed
Probab=25.31 E-value=2.7e+02 Score=31.83 Aligned_cols=13 Identities=15% Similarity=0.043 Sum_probs=7.9
Q ss_pred cHHHHHHHHHHHh
Q 001663 825 TLLHFVVQEIIRT 837 (1035)
Q Consensus 825 TLLhyLv~~I~r~ 837 (1035)
.+|+.|+..+++.
T Consensus 142 ~ll~~lld~ivd~ 154 (324)
T PRK09546 142 GWLVDVCDALTDH 154 (324)
T ss_pred HHHHHHHHHHHHH
Confidence 4667776666543
No 192
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.04 E-value=6.7e+02 Score=33.46 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccc------cCCCCCceeeeccccccccccccCCC--CCccHHHHHHH
Q 001663 761 KKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMN------VGTNRGDAHAFKLDTLLKLVDVKGAD--GKTTLLHFVVQ 832 (1035)
Q Consensus 761 ~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN------~gt~rG~A~GFkLsSL~KL~dtKs~D--~k~TLLhyLv~ 832 (1035)
...|..+..-|+.|++..-++..|+..|. |++= .|.-|..| ...|.++.+++=.| +-.+.||-+..
T Consensus 436 dGAL~~vgsl~~~L~K~s~~~~~mE~flv--~hVfP~f~s~~g~Lrara----c~vl~~~~~~df~d~~~l~~ale~t~~ 509 (1010)
T KOG1991|consen 436 DGALRMVGSLASILLKKSPYKSQMEYFLV--NHVFPEFQSPYGYLRARA----CWVLSQFSSIDFKDPNNLSEALELTHN 509 (1010)
T ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHH--HHhhHhhcCchhHHHHHH----HHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 34677777778899999999999998876 3331 22222222 23466666444333 33455555544
No 193
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.91 E-value=8.1e+02 Score=31.75 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CcCCcchhhHHHHHHHHHH
Q 001663 930 KMAEEEIIRIQAHESVALSLVKEITEYFHGNSAR-EEAHPFRIFMVVRDFLTVL 982 (1035)
Q Consensus 930 ~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~k-ee~~P~~fF~il~dFl~~~ 982 (1035)
+...++++.+.+..+.+.+.+++++.-.+..... .+++ .+|+.-|..|-..+
T Consensus 596 e~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE-r~~~~EL~~~~~~l 648 (717)
T PF10168_consen 596 EKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE-REFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHH
Confidence 3345566777777777777777777766542111 1111 35665555444443
No 194
>PHA03282 envelope glycoprotein E; Provisional
Probab=24.90 E-value=91 Score=37.81 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 001663 120 KLLILAFASVSSALVVGGILVFFYCRKRRQN 150 (1035)
Q Consensus 120 ~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~ 150 (1035)
.|++|+-+++..|++.|+.-+++-|||||--
T Consensus 409 rl~~vlGaalgLav~glsvw~C~~c~r~ra~ 439 (540)
T PHA03282 409 RLVGVLGAALGLAAAGLSVWACVTCRRARAW 439 (540)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeeehhhhhh
Confidence 5566666665555444444444444555433
No 195
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=24.79 E-value=2.3e+02 Score=34.13 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 001663 229 GDTNCVSPELRPLPPLSQQA 248 (1035)
Q Consensus 229 ~~~k~~spel~plppl~~~~ 248 (1035)
-|-+||-| |||..-+
T Consensus 124 tY~~cD~P-----PpLn~Lt 138 (518)
T KOG1830|consen 124 TYAQCDKP-----PPLNILT 138 (518)
T ss_pred HHhccCCC-----CCccccC
Confidence 46666643 5665544
No 196
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.76 E-value=8.8e+02 Score=26.90 Aligned_cols=66 Identities=8% Similarity=0.087 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 001663 929 MKMAEEEIIRIQAHESVALSLVK-EITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINE 994 (1035)
Q Consensus 929 l~~Ae~eI~~Lq~~~~~a~~~~k-el~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~e 994 (1035)
+..|++++...++.+...+..++ +|=.+|..-..=....-..||.+=..|.....++..++...-.
T Consensus 147 L~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d 213 (225)
T cd07590 147 LEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLD 213 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667777777777766666543 3333332211000012235666667888888888888876544
No 197
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.76 E-value=1.2e+03 Score=27.43 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=17.5
Q ss_pred HHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHH
Q 001663 741 FKRVDAMLYI----TNFESEVEYLKKSFETLEAACEELR 775 (1035)
Q Consensus 741 ~~RL~allfk----~~F~~~l~~L~~~L~~l~~A~~eLr 775 (1035)
..+.+|++.+ .++..+.+.++-.++.|..=+..++
T Consensus 5 ~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LK 43 (319)
T PF09789_consen 5 QSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALK 43 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555443 3344444555555555555555554
No 198
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.62 E-value=3.2e+02 Score=24.28 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001663 888 LSSEVSKLSRGLGNIGEVVQLN 909 (1035)
Q Consensus 888 L~~dv~kLekgL~kI~eelq~~ 909 (1035)
+..++..|++.+.+++..++..
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~ 23 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERL 23 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777666543
No 199
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=24.55 E-value=9.7e+02 Score=26.36 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc-----HHHHHHHHHHHHhccccccCCCCCceeeec-----cccccccccccC
Q 001663 750 ITNFESEVEYLKKSFETLEAACEELRNS-----RMFLKLLEAVLKTGNRMNVGTNRGDAHAFK-----LDTLLKLVDVKG 819 (1035)
Q Consensus 750 k~~F~~~l~~L~~~L~~l~~A~~eLr~S-----~~L~~LL~iILaiGNfLN~gt~rG~A~GFk-----LsSL~KL~dtKs 819 (1035)
....++.++..+..|+.+.++|+.+.++ ...+.+-+.+-.+|+.........-+.+|. +..|..+.
T Consensus 4 v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~---- 79 (215)
T cd07604 4 VGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALF---- 79 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred CCCCccHHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchh-hhhHHHhhcCCHHHHHHHHHHHHHH
Q 001663 820 ADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSE-LSNVKKAAAMDSDVLSSEVSKLSRG 898 (1035)
Q Consensus 820 ~D~k~TLLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~E-L~~VkkAAkVdle~L~~dv~kLekg 898 (1035)
..|++-+...|+.. +..|.++ |..|++-.+=-+|-...++......
T Consensus 80 ----~~L~~~~~~~i~~p-----------------------------L~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k 126 (215)
T cd07604 80 ----KNLMQNLNNIIMFP-----------------------------LDSLLKGDLKGSKGDLKKPFDKAWKDYETKASK 126 (215)
T ss_pred ----HHHHHHHHHHHHHH-----------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhh------------hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcC
Q 001663 899 LGNIGEVVQLNE------------AMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEA 966 (1035)
Q Consensus 899 L~kI~eelq~~e------------~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~ 966 (1035)
+.+.+..-.... ....+.....|...+-.|+-....- +.++-.+.+..++.||+.-
T Consensus 127 ~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~l------q~kKk~e~Le~ll~~~~Aq------ 194 (215)
T cd07604 127 IEKEKKQLAKEAGMIRTEITGAEIAEEMEKERRMFQLQMCEYLIKVNEI------KTKKGVDLLQHLVEYYHAQ------ 194 (215)
T ss_pred HHhccchhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH------
Q ss_pred CcchhhHHHHHHHHHHHHHHHHH
Q 001663 967 HPFRIFMVVRDFLTVLDRVCKEV 989 (1035)
Q Consensus 967 ~P~~fF~il~dFl~~~dka~kEv 989 (1035)
..||..=.+-+..|+--.+++
T Consensus 195 --~~fF~~G~~ll~~l~p~~~~L 215 (215)
T cd07604 195 --NSYFQDGLKVIEHFRPYIEKL 215 (215)
T ss_pred --HHHHHHHHHHHHHHHhhhhcC
No 200
>PHA03281 envelope glycoprotein E; Provisional
Probab=24.42 E-value=94 Score=38.30 Aligned_cols=10 Identities=50% Similarity=0.584 Sum_probs=6.1
Q ss_pred CcCcCccccc
Q 001663 264 VAEDEDEEFY 273 (1035)
Q Consensus 264 ~~e~~~~~fy 273 (1035)
++.|-||||=
T Consensus 612 ~~~~~~~~~~ 621 (642)
T PHA03281 612 EETDTDEEFG 621 (642)
T ss_pred cccchhhhhc
Confidence 4455677773
No 201
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=24.41 E-value=1.6e+03 Score=28.72 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=24.9
Q ss_pred HHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001663 730 FLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEEL 774 (1035)
Q Consensus 730 Fll~L~~IP~~~~RL~allfk~~F~~~l~~L~~~L~~l~~A~~eL 774 (1035)
|-...++-|++++||+|. +.+++...+.|..|++-|++|
T Consensus 8 fsd~~ldsp~fre~l~~h------e~el~~tnkfik~~ikdg~~l 46 (812)
T KOG1451|consen 8 FSDCYLDSPDFRERLKCH------EVELDRTNKFIKELIKDGKEL 46 (812)
T ss_pred ccccccCChHHHHHhhHH------HHHHHHHHHHHHHHHHhHHHH
Confidence 445567889999999984 334444555555555555555
No 202
>PF08807 DUF1798: Bacterial domain of unknown function (DUF1798); InterPro: IPR014913 This family contains many hypothetical proteins. The structure of one of them has been solved and it adopts an all alpha helical fold. ; PDB: 2HUJ_A 2ETS_A 2HFI_A 2IM8_B.
Probab=24.30 E-value=7.1e+02 Score=24.72 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 918 RKKFSESMNRFMKMAEEEIIRIQAHESV 945 (1035)
Q Consensus 918 ~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~ 945 (1035)
+-.|.+.|+.|.+.+.+.++..+.....
T Consensus 25 e~DF~~~VKPf~d~vd~~l~~w~~~a~~ 52 (111)
T PF08807_consen 25 EYDFYEEVKPFADEVDQLLEEWKEYALE 52 (111)
T ss_dssp ---TTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhccchhHHHHHHHHHHHHHHHH
Confidence 4668888999988888888776655433
No 203
>PRK00523 hypothetical protein; Provisional
Probab=24.29 E-value=1e+02 Score=28.44 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001663 122 LILAFASVSSALVVGGILVFFYCRKR 147 (1035)
Q Consensus 122 ~~~ais~~~~~~~~~~~~~~~~~~~r 147 (1035)
+.++|..++.|+++.++..||+-||-
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark~ 29 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKKM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666667765553
No 204
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=24.27 E-value=6.3e+02 Score=28.53 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 001663 934 EEIIRIQAHESVALSLVKEITEYFH 958 (1035)
Q Consensus 934 ~eI~~Lq~~~~~a~~~~kel~eYFG 958 (1035)
.....|..+++.|-+.++++.+-..
T Consensus 178 ~~a~nidsqLk~l~~dL~~ii~~lN 202 (254)
T KOG2196|consen 178 KMAENIDSQLKRLSEDLKQIIKSLN 202 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344455566666666666665543
No 205
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=24.00 E-value=2.6e+02 Score=30.58 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------CcCCcchhhH-HHHHHHHHHHHHHH
Q 001663 922 SESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAR-------EEAHPFRIFM-VVRDFLTVLDRVCK 987 (1035)
Q Consensus 922 ~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~k-------ee~~P~~fF~-il~dFl~~~dka~k 987 (1035)
.+++..=+++|...+...+++|..+...+..+...|-.+-.. .|...-.||. .|..|...+..+|-
T Consensus 152 ~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~cv 225 (236)
T cd07651 152 LEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTLCV 225 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356666777777777777777877777777777666543211 0111124555 46777777776664
No 206
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=23.87 E-value=5.9e+02 Score=32.87 Aligned_cols=142 Identities=16% Similarity=0.154 Sum_probs=85.4
Q ss_pred ccccChhHHHHHHHHHhhcCC-------CHHHHHHHHHcC---------C--CCCCCHHHHHHHHhhCCC----------
Q 001663 655 NRVLDPKKSQNIAILLRALNV-------TIEEVCEALLEG---------N--ADTLGTELLESLLKMAPT---------- 706 (1035)
Q Consensus 655 isVLD~KRAQNIsI~L~klkl-------s~eeI~~AIl~~---------D--~~~L~~E~Le~Llk~lPT---------- 706 (1035)
+.+|+.++-+.+-=.-+.++| +.+|+..|+... | +-.++.+..+.|..++|.
T Consensus 141 ~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI 220 (695)
T PRK13802 141 VAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGV 220 (695)
T ss_pred HhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCC
Confidence 357777666665555556665 568888887632 2 223466778889999983
Q ss_pred --hHHHHHHHhhhcc------cccCCChHHHHHHHHhCccc-HH------HHHHHHHHHHHhHHHH--HHHHHHHHHHHH
Q 001663 707 --KEEERKLKEYKDE------SLTKLGPAEKFLKAVLDVPF-AF------KRVDAMLYITNFESEV--EYLKKSFETLEA 769 (1035)
Q Consensus 707 --~EEi~~Lkey~gd------~p~~L~~aEqFll~L~~IP~-~~------~RL~allfk~~F~~~l--~~L~~~L~~l~~ 769 (1035)
.+|+..++++--| ...+=.+..+.+.+|...-. .+ .|=.-.-|--.|-.++ +.|.+.|+.|.+
T Consensus 221 ~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~pe~l~~~~~~l~~ 300 (695)
T PRK13802 221 FGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKAGARVKASETTPLSEHQGPYWGQFGGRYVPEALITALDELER 300 (695)
T ss_pred CCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhccccccccCCCCcccCCCCCcCCcCCEeCCHHHHHHHHHHHH
Confidence 5677777665211 11122233444444432210 00 0000000112344444 688899999999
Q ss_pred HHHHHHhcHHHHHHHHHHHHhccccccCC
Q 001663 770 ACEELRNSRMFLKLLEAVLKTGNRMNVGT 798 (1035)
Q Consensus 770 A~~eLr~S~~L~~LL~iILaiGNfLN~gt 798 (1035)
|.+.+++...|.+=|..+|. +|+...|
T Consensus 301 ~~~~~~~~~~f~~e~~~~~~--~~iGrpT 327 (695)
T PRK13802 301 VYTQAKADPEFHKELATLNQ--RYVGRPS 327 (695)
T ss_pred HHHHHhcCHHHHHHHHHHHH--hcCCCCC
Confidence 99999999999999999876 7776555
No 207
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.76 E-value=1.8e+03 Score=29.95 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 885 SDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEI 953 (1035)
Q Consensus 885 le~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel 953 (1035)
-++......++++.+.+++-.++.... ...+.=++.+..+++..+.+++.++.....+.+.+.++
T Consensus 776 ~~~~a~k~~ef~~q~~~l~~~l~fe~~----~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~ 840 (1141)
T KOG0018|consen 776 QQEFAKKRLEFENQKAKLENQLDFEKQ----KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI 840 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhheec----ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH
Confidence 455566677778888877766654332 22455678999999999999999998888877777666
No 208
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=23.62 E-value=3.5e+02 Score=32.88 Aligned_cols=63 Identities=10% Similarity=0.201 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Q 001663 882 AMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEE-EIIRIQAHESVALSLVKEITEYF 957 (1035)
Q Consensus 882 kVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~-eI~~Lq~~~~~a~~~~kel~eYF 957 (1035)
.+....|..+-.+|.+.|+++-. ...|.+-|.+|+++.++ +.+.|++.++.+.+.+..+..--
T Consensus 395 ~i~~G~i~~ekA~LQK~Ie~LIl-------------~q~f~qF~~e~~ek~Kk~q~k~l~~l~~~ag~~l~~~~d~i 458 (473)
T PRK15362 395 QINTGMINTEKAKLQKKIEQLIL-------------QQRFLDFIMEQYEKQKKIEQKRLEELYKGSGAALRDALDAI 458 (473)
T ss_pred HhhhchhhHHHhhHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35556666666666666665432 36799999999998874 44567777776666666555433
No 209
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=23.55 E-value=55 Score=36.00 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=17.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHh
Q 001663 116 RSSQKLLILAFASVSSALVVGGILVFF 142 (1035)
Q Consensus 116 ~~~~~l~~~ais~~~~~~~~~~~~~~~ 142 (1035)
+...++|=|||++|++.+|++++.+||
T Consensus 10 RK~N~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 10 RKTNKILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhee
Confidence 345667888888888655555555444
No 210
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=23.53 E-value=8.6e+02 Score=27.70 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001663 885 SDVLSSEVSKLSRGLGNIGEVV 906 (1035)
Q Consensus 885 le~L~~dv~kLekgL~kI~eel 906 (1035)
+++|.....+|+...+.++-++
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~ 75 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQ 75 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 211
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=23.50 E-value=1.1e+02 Score=33.90 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=20.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 001663 116 RSSQKLLILAFASVSSALVVGGILVFFYCRKRR 148 (1035)
Q Consensus 116 ~~~~~l~~~ais~~~~~~~~~~~~~~~~~~~r~ 148 (1035)
+.+..+|.|+|.+++..+++..++.|++.+|..
T Consensus 185 S~S~vilpvvIaliVitl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 185 SYSSVILPVVIALIVITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 336677778777766666666666555545443
No 212
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=23.41 E-value=1.8e+02 Score=28.20 Aligned_cols=9 Identities=56% Similarity=0.922 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001663 925 MNRFMKMAE 933 (1035)
Q Consensus 925 M~~Fl~~Ae 933 (1035)
|..|++.++
T Consensus 5 ~~~~~~~i~ 13 (133)
T PF08359_consen 5 MNRFLERIE 13 (133)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 213
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.37 E-value=4.3e+02 Score=31.87 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC----CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 887 VLSSEVSKLSRGLGNIGEVVQLNEAMG----MDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKE 952 (1035)
Q Consensus 887 ~L~~dv~kLekgL~kI~eelq~~e~~~----~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~ke 952 (1035)
.|..++.++...+.+++..+...+... ...........+..-+....+++.++++++.++.+.+.+
T Consensus 338 ~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 338 ELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555444332211 111122233333444444444555555444444443333
No 214
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=23.17 E-value=8.7e+02 Score=27.40 Aligned_cols=10 Identities=0% Similarity=0.102 Sum_probs=4.0
Q ss_pred HHHhcccccc
Q 001663 787 VLKTGNRMNV 796 (1035)
Q Consensus 787 ILaiGNfLN~ 796 (1035)
.+..|+-|..
T Consensus 66 M~e~~~~lg~ 75 (246)
T cd07618 66 MQEGSAQLGE 75 (246)
T ss_pred HHHHHhcCCC
Confidence 3334444443
No 215
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=23.09 E-value=1.1e+03 Score=28.71 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 918 RKKFSESMNRFMKMAEEEIIRIQAHES 944 (1035)
Q Consensus 918 ~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~ 944 (1035)
...|..-+..++.+.++.+.++.+-+.
T Consensus 294 EqqfL~lQedL~~DL~dDL~ka~eTf~ 320 (426)
T smart00806 294 EQQFLTLQEDLIADLKEDLEKAEETFD 320 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666544443
No 216
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.96 E-value=6.7e+02 Score=29.07 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=17.6
Q ss_pred ccccchhhhhHHHhhcC--CHHHHHHHHHHHHHHHHHHHHH
Q 001663 867 VSGLSSELSNVKKAAAM--DSDVLSSEVSKLSRGLGNIGEV 905 (1035)
Q Consensus 867 V~~Ls~EL~~VkkAAkV--dle~L~~dv~kLekgL~kI~ee 905 (1035)
+..|..+|..+++|-.. .+..|..++.+|......+...
T Consensus 140 I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~ek 180 (294)
T COG1340 140 IKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEK 180 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554332 2334444444444444444433
No 217
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=22.96 E-value=9.7e+02 Score=25.79 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=5.0
Q ss_pred HHHHHHHHHhc
Q 001663 947 LSLVKEITEYF 957 (1035)
Q Consensus 947 ~~~~kel~eYF 957 (1035)
..-+++++.||
T Consensus 99 ~~P~~~~~~~~ 109 (216)
T cd07599 99 ILPAKELKKYI 109 (216)
T ss_pred HHHHHHHHHHH
Confidence 33344444454
No 218
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.95 E-value=1.3e+03 Score=28.98 Aligned_cols=149 Identities=16% Similarity=0.274 Sum_probs=84.6
Q ss_pred CCccccChhHHHHHH----HHHhhc-CCCHHHHHHHHHcCCC-CCCCHHHHHHHHhhCCChHHHHHHHhhhcccccCCCh
Q 001663 653 SENRVLDPKKSQNIA----ILLRAL-NVTIEEVCEALLEGNA-DTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGP 726 (1035)
Q Consensus 653 q~isVLD~KRAQNIs----I~L~kl-kls~eeI~~AIl~~D~-~~L~~E~Le~Llk~lPT~EEi~~Lkey~gd~p~~L~~ 726 (1035)
++.+|+|..-.+-|+ |.|.-. .++++|-+.+|+.|+. +.+..|....|++++-..-- +..|-|- -
T Consensus 439 e~~qI~D~T~~Nlv~frr~IYLti~SSldfeEaaHKLLKmkip~~q~~elc~mii~cc~QerT---y~kFYgl------L 509 (739)
T KOG2140|consen 439 EKLQIIDMTETNLVNFRRTIYLTIQSSLDFEEAAHKLLKMKIPESQEKELCNMIIDCCAQERT---YEKFYGL------L 509 (739)
T ss_pred ccceeeccccchhHHhhhhheeeeeccCcHHHHHHHHHhccCCchhhHHHHHHHHHHhhhHHH---HHHHHHH------H
Confidence 357888876665554 222222 4689999999999873 45666777777776643222 2222221 1
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccccCCCCCceeee
Q 001663 727 AEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAF 806 (1035)
Q Consensus 727 aEqFll~L~~IP~~~~RL~allfk~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GF 806 (1035)
.|+|+..- ..+...|+..+.+-...|+.++. +.|| .+.+++..+|. -++.++
T Consensus 510 ~eRfc~l~------------r~~q~~fe~~f~q~YstIhr~Et--nkLR---nlakffahLls-----------td~lpw 561 (739)
T KOG2140|consen 510 GERFCMLH------------REWQEAFEKCFKQQYSTIHRYET--NKLR---NLAKFFAHLLS-----------TDALPW 561 (739)
T ss_pred HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhH--HHHH---HHHHHHHHHhc-----------ccccch
Confidence 35554321 12334555555444444555533 3333 23444444443 267888
Q ss_pred ccccccccccccCCCCCccHHHHHHHHHHHhh
Q 001663 807 KLDTLLKLVDVKGADGKTTLLHFVVQEIIRTE 838 (1035)
Q Consensus 807 kLsSL~KL~dtKs~D~k~TLLhyLv~~I~r~e 838 (1035)
++=...||.+--++-...=++.|+-++|+..-
T Consensus 562 ~vl~~ikLTEEdTtsssRIfiKilFqELve~l 593 (739)
T KOG2140|consen 562 DVLACIKLTEEDTTSSSRIFIKILFQELVEAL 593 (739)
T ss_pred HHHHHhhcccccCCccceehHHHHHHHHHHHh
Confidence 88777777776665555568888888887643
No 219
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=22.95 E-value=2.6e+02 Score=33.03 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHH
Q 001663 944 SVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVC 986 (1035)
Q Consensus 944 ~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~ 986 (1035)
++....++++.+||-=+|.. .+|..+-.-++..++.++...
T Consensus 59 ~~~e~~i~r~~dffvI~Pv~--ldP~gIv~k~~hll~t~e~~~ 99 (355)
T PF07431_consen 59 EDPESLIDRLLDFFVIEPVD--LDPTGIVRKLKHLLRTYEDRF 99 (355)
T ss_pred cchHHHHHHHHhheecCcCC--CCchhhHHHHHHHHHhhHHHH
Confidence 34467788999999877755 577777777777777765444
No 220
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=22.83 E-value=1e+03 Score=26.05 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCC
Q 001663 923 ESMNRFMKMAEEEIIR----IQAHESVALSLVKEITEYFHGN 960 (1035)
Q Consensus 923 e~M~~Fl~~Ae~eI~~----Lq~~~~~a~~~~kel~eYFGED 960 (1035)
++|-.++.+.+..+.+ .++.......++.++-+|||.-
T Consensus 142 ~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~ 183 (225)
T KOG4848|consen 142 KKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYW 183 (225)
T ss_pred HHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCcc
Confidence 3344444444444433 2333344556788899999963
No 221
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.80 E-value=9.7e+02 Score=29.25 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001663 929 MKMAEEEIIRIQAHESV 945 (1035)
Q Consensus 929 l~~Ae~eI~~Lq~~~~~ 945 (1035)
+..++.++..++..+..
T Consensus 257 L~~l~~~~~~~~~~l~~ 273 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQ 273 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544433
No 222
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=22.74 E-value=54 Score=39.41 Aligned_cols=61 Identities=21% Similarity=0.140 Sum_probs=38.9
Q ss_pred HHHHhcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccc----cCCCCCccHHHHHHHHH
Q 001663 772 EELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDV----KGADGKTTLLHFVVQEI 834 (1035)
Q Consensus 772 ~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dt----Ks~D~k~TLLhyLv~~I 834 (1035)
..+..|....-++-.+|+||||.-.... ..+=..=+.+.||.++ |+.|+..++-|-....+
T Consensus 321 ~sw~~S~d~~l~t~g~LaigNfaR~D~~--ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsAL 385 (604)
T KOG4500|consen 321 ESWFRSDDSNLITMGSLAIGNFARRDDI--CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSAL 385 (604)
T ss_pred HHHhcCCchhHHHHHHHHHHhhhccchH--HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHH
Confidence 4444566667778889999999754321 1111122557777765 67788888888876533
No 223
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.65 E-value=3.7e+02 Score=23.76 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001663 932 AEEEIIRIQAHESVALSLVKEITEYF 957 (1035)
Q Consensus 932 Ae~eI~~Lq~~~~~a~~~~kel~eYF 957 (1035)
.+.+++.|.+...++++.+++++..|
T Consensus 19 vk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555544
No 224
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.64 E-value=1.2e+03 Score=26.85 Aligned_cols=35 Identities=6% Similarity=0.056 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001663 923 ESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYF 957 (1035)
Q Consensus 923 e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYF 957 (1035)
..+..=+..|+..|+.|+.+++.++..+.+...-.
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566777777777777777766665554433
No 225
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=22.59 E-value=1.6e+02 Score=36.56 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=25.3
Q ss_pred CCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 001663 960 NSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTII 998 (1035)
Q Consensus 960 D~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~eR~~~ 998 (1035)
+-.|+...+.++-..|+...+.=+|+.+|+.-.-||.++
T Consensus 442 n~~ke~~~~~e~a~~iw~l~tip~kv~~e~~la~ek~~~ 480 (727)
T PF05642_consen 442 NLIKEKNKPSEVAEGIWKLSTIPDKVVNEFELAIEKIKA 480 (727)
T ss_pred hhhhcccCHHHHHhHhHhhhcCcHHHHHHHHHHHHHhhc
Confidence 344444555666666666667778888888877777544
No 226
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=22.33 E-value=1.9e+03 Score=29.06 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=19.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001663 747 MLYITNFESEVEYLKKSFETLEAACEELR 775 (1035)
Q Consensus 747 llfk~~F~~~l~~L~~~L~~l~~A~~eLr 775 (1035)
.+.+..|..++++++...+...+-...+.
T Consensus 423 ~ii~~g~~~eLd~lr~~~~~~~~~i~~le 451 (843)
T COG0249 423 GIIKEGYNIELDELRDLLNNAKEWIAKLE 451 (843)
T ss_pred hHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888887777765555555554
No 227
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.33 E-value=1e+03 Score=25.74 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001663 884 DSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAR 963 (1035)
Q Consensus 884 dle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~k 963 (1035)
++..|..++..|...++.++..+...+. .-+-...|-. +++..++|..|++....+.+.++.+-+--.+-..+
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~vea------Eik~L~s~Lt-~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpe 152 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEA------EIKELSSALT-TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPE 152 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHHHHHhhh--hhccc
Q 001663 964 EEAHPFRIFMVVRDFLTVLDRVCKEVGMINE--RTIIS 999 (1035)
Q Consensus 964 ee~~P~~fF~il~dFl~~~dka~kEv~k~~e--R~~~~ 999 (1035)
+ -..-.+.|.++|++-++.++ |.|+.
T Consensus 153 d----------k~~v~~~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 153 D----------KEQVYREYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 228
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.26 E-value=7.4e+02 Score=28.76 Aligned_cols=69 Identities=6% Similarity=0.002 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001663 884 DSDVLSSEVSKLSRGLGNIGEVVQLNEAMG-MDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGN 960 (1035)
Q Consensus 884 dle~L~~dv~kLekgL~kI~eelq~~e~~~-~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED 960 (1035)
..+-+.+++.++++.+.+.+..++...... .-+.... .....+.+..|+.++.++...+.++..||+++
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~--------~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~ 240 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQ--------SSAQLSLISTLEGELIRVQAQLAQLRSITPEQ 240 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 345677788888888888877766443211 1011110 11233446667777777777777888888884
No 229
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=22.17 E-value=5.3e+02 Score=26.77 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001663 884 DSDVLSSEVSKLSRGLGNIGE-VVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFH 958 (1035)
Q Consensus 884 dle~L~~dv~kLekgL~kI~e-elq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFG 958 (1035)
.+..|...|..+...+..+.. +.+........+........-..|+.....+-..++..+.++ ..+|.++|.
T Consensus 67 ~L~~l~~~l~~a~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~---~~~l~e~Y~ 139 (145)
T PF14942_consen 67 NLEQLLERLQAANSMCSRLQQKEQEKQKDDYLQANREQRKQEWEEFMKEQQQKKQRVDEEFREK---EERLKEQYS 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 445555555555555554432 111111111112234455555678888877777777776554 455555664
No 230
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.12 E-value=5.4e+02 Score=28.31 Aligned_cols=14 Identities=0% Similarity=-0.133 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 001663 977 DFLTVLDRVCKEVG 990 (1035)
Q Consensus 977 dFl~~~dka~kEv~ 990 (1035)
.|+.-++-+.+.+.
T Consensus 131 ~l~eGvemi~k~l~ 144 (208)
T PRK14154 131 SMRDGMSLTLDLLH 144 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 231
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=21.94 E-value=1.1e+03 Score=25.86 Aligned_cols=14 Identities=0% Similarity=-0.213 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHh
Q 001663 979 LTVLDRVCKEVGMI 992 (1035)
Q Consensus 979 l~~~dka~kEv~k~ 992 (1035)
-..+.++..+..+.
T Consensus 167 ~~k~~k~~~~~~~a 180 (251)
T cd07653 167 KANANLKTQAAEEA 180 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 232
>PRK15396 murein lipoprotein; Provisional
Probab=21.58 E-value=4e+02 Score=25.03 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 884 DSDVLSSEVSKLSRGLGNIGEVVQ 907 (1035)
Q Consensus 884 dle~L~~dv~kLekgL~kI~eelq 907 (1035)
+++.|..+|..|...+..+...++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~ 49 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVN 49 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777666655443
No 233
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=21.54 E-value=5.4e+02 Score=22.74 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 001663 972 FMVVRDFLTVLDRVCKEVGMINE 994 (1035)
Q Consensus 972 F~il~dFl~~~dka~kEv~k~~e 994 (1035)
+....+.+..+.+.+++++.+..
T Consensus 52 ~~~~~~~~k~l~~~Wk~iG~vpr 74 (77)
T PF03993_consen 52 WKEAAEEIKELQQEWKEIGPVPR 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCc
Confidence 44455666677777777776543
No 234
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.52 E-value=5.5e+02 Score=28.12 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001663 927 RFMKMAEEEIIRIQAHESVA 946 (1035)
Q Consensus 927 ~Fl~~Ae~eI~~Lq~~~~~a 946 (1035)
.=+..++.+++.++++.+..
T Consensus 146 ~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 146 NQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 235
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.52 E-value=6.3e+02 Score=27.56 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001663 882 AMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNS 961 (1035)
Q Consensus 882 kVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~ 961 (1035)
+..++.+.+++..|+..+.++-+.+ .++.+..+.|+...+.-...|++... |+++|.
T Consensus 1 r~~i~~~E~d~~~Le~~l~Kl~K~~------------~~~~dag~~~~~a~~~F~~~l~d~~~-----------~~~~De 57 (200)
T cd07638 1 RAALEDVEGDVAELELKLDKLVKLC------------IGMIDAGKAFCQANKQFMNGIRDLAQ-----------YSSKDA 57 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHHHHHHH-----------hCCcch
Q ss_pred CCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcccccccC
Q 001663 962 AREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISNAHKF 1004 (1035)
Q Consensus 962 ~kee~~P~~fF~il~dFl~~~dka~kEv~k~~eR~~~~~a~~f 1004 (1035)
-. ..-+.-|.+.+..+...+..+...-++.|+.-..+|
T Consensus 58 ~i-----~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F 95 (200)
T cd07638 58 VI-----ETSLTKFSDTLQEMINYHTILFDQAQRSIKAQLQTF 95 (200)
T ss_pred hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 236
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=21.51 E-value=1.7e+03 Score=30.84 Aligned_cols=10 Identities=50% Similarity=0.667 Sum_probs=4.1
Q ss_pred cceeeecccc
Q 001663 203 SEFLYLGTLV 212 (1035)
Q Consensus 203 s~flylgt~~ 212 (1035)
+|-.-||-+.
T Consensus 1398 sEnImlgqla 1407 (1605)
T KOG0260|consen 1398 SENIMLGQLA 1407 (1605)
T ss_pred eeeeeecccc
Confidence 3444444433
No 237
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.50 E-value=6.9e+02 Score=28.12 Aligned_cols=151 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHhcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccccCC--------------CCCccHHHHHHHHHHHhhc
Q 001663 774 LRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGA--------------DGKTTLLHFVVQEIIRTEG 839 (1035)
Q Consensus 774 Lr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs~--------------D~k~TLLhyLv~~I~r~e~ 839 (1035)
|..++.|+.+|..- .+-.||=.+..++...|=.+..|.-..-+|.. +-+.+-+.=|++.|.+.+
T Consensus 4 Ls~~~~f~~FLts~-dw~a~~kq~~~~~~~~~~~~~~lna~~kv~~~d~eF~e~~ey~d~l~~~l~~ieki~~Rv~kr~- 81 (240)
T cd07667 4 LSFNEHFNVFLTAK-DLNAYKKQGIALLSKMGESVKYVTGGYKLRSRPLEFAAIGDYLDTFALKLGTIDRIAQRIIKEE- 81 (240)
T ss_pred cccChHHHHHHcch-hHHHHhhcccccccccchHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-
Q ss_pred ccccCCCCCCCCCCchhHHHhhcccccccccchhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhh
Q 001663 840 ARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRK 919 (1035)
Q Consensus 840 ~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~EL~~VkkAAkVdle~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~d 919 (1035)
.|..-. +.++......|..++..-...++.+..-|.+...+++.+.+.. ++
T Consensus 82 ---------------~~l~~d---~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~-----------~~ 132 (240)
T cd07667 82 ---------------IEYLVE---LREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM-----------TE 132 (240)
T ss_pred ---------------HHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001663 920 KFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEY 956 (1035)
Q Consensus 920 kF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eY 956 (1035)
.|...++.++.-++. +..|-..-+...-.|.++.+|
T Consensus 133 ~yl~~Lke~~~Y~~s-lk~vlK~RdqkQ~d~E~l~E~ 168 (240)
T cd07667 133 DFLPVLREYILYSES-MKNVLKKRDQVQAEYEAKLEA 168 (240)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
No 238
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.47 E-value=1e+02 Score=32.00 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhhhhccCC
Q 001663 133 LVVGGILVFFYCRKRRQNG 151 (1035)
Q Consensus 133 ~~~~~~~~~~~~~~r~~~~ 151 (1035)
+++++++++.|+|+|.+.|
T Consensus 27 l~~l~~~~~~Y~r~r~~tK 45 (149)
T PF11694_consen 27 LLVLIFFFIKYLRNRLDTK 45 (149)
T ss_pred HHHHHHHHHHHHHhcCcch
Confidence 3444455577778887776
No 239
>PRK01844 hypothetical protein; Provisional
Probab=21.45 E-value=1.2e+02 Score=27.96 Aligned_cols=23 Identities=39% Similarity=0.392 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 001663 125 AFASVSSALVVGGILVFFYCRKR 147 (1035)
Q Consensus 125 ais~~~~~~~~~~~~~~~~~~~r 147 (1035)
+|-.++.|+++.++..||+-||-
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~ 28 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666656656665543
No 240
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=21.42 E-value=97 Score=30.51 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhhhhccCC
Q 001663 132 ALVVGGILVFFYCRKRRQNG 151 (1035)
Q Consensus 132 ~~~~~~~~~~~~~~~r~~~~ 151 (1035)
+|++++++-+++||..++.+
T Consensus 10 lLll~l~asl~~wr~~~rq~ 29 (107)
T PF15330_consen 10 LLLLSLAASLLAWRMKQRQK 29 (107)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 34444455567776666555
No 241
>PHA00728 hypothetical protein
Probab=21.27 E-value=2.2e+02 Score=28.68 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 001663 884 DSDVLSSEVSKLSRGLGNIGEVVQ 907 (1035)
Q Consensus 884 dle~L~~dv~kLekgL~kI~eelq 907 (1035)
++++|..+-.+|.+.|.+++..+.
T Consensus 6 eveql~keneelkkkla~leal~n 29 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEALMN 29 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHc
Confidence 356666677777777777665543
No 242
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=21.06 E-value=7e+02 Score=27.87 Aligned_cols=68 Identities=7% Similarity=0.073 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHH
Q 001663 920 KFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGM 991 (1035)
Q Consensus 920 kF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k 991 (1035)
.+.+.+..+.....+.-..+...+..+.....++...+.++.. +-.+++..+..++..+.+.-.+++.
T Consensus 213 ~~v~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~----~l~~~l~~l~~~~~~l~~~~~~l~~ 280 (291)
T TIGR00996 213 RLLDNLATLTAQLADRDDALDDALAALSGASAQVRDLLAENRP----NLPQALANLAPVLTLLVDYHPELEQ 280 (291)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHhcchhHHH
Confidence 3444445555444444444444444444444555555544321 1234555556666666555555544
No 243
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=21.05 E-value=1.8e+03 Score=28.23 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 001663 918 RKKFSESMNRFMKMAEEE 935 (1035)
Q Consensus 918 ~dkF~e~M~~Fl~~Ae~e 935 (1035)
.+.|...+..|+...-..
T Consensus 164 ~~~F~~r~~~~l~~~F~~ 181 (701)
T PF09763_consen 164 SDKFCKRLSRFLNNMFKN 181 (701)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777666665533
No 244
>KOG4818 consensus Lysosomal-associated membrane protein [General function prediction only]
Probab=20.96 E-value=57 Score=38.21 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 001663 118 SQKLLILAFASVSSALVVGGILVFFYCRKRRQN 150 (1035)
Q Consensus 118 ~~~l~~~ais~~~~~~~~~~~~~~~~~~~r~~~ 150 (1035)
-..++.+||.+.+++|+++.+.+++.. |||++
T Consensus 325 ~siv~PivVg~~l~gl~~~vliaylIg-rr~~~ 356 (362)
T KOG4818|consen 325 LNIVLPIAVGAILAGLVLVVLIAYLIG-RRRSH 356 (362)
T ss_pred cceecchHHHHHHHHHHHHHHHHhhee-heecc
Confidence 456788899999998888877777776 44444
No 245
>PF12806 Acyl-CoA_dh_C: Acetyl-CoA dehydrogenase C-terminal like
Probab=20.86 E-value=3.2e+02 Score=27.11 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHH
Q 001663 921 FSESMNRFMKMAEE----EIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVL 982 (1035)
Q Consensus 921 F~e~M~~Fl~~Ae~----eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~ 982 (1035)
|.+.|+.|++++.. .+..+.+.+.++.+.+.+++.++.+.... ++..+...=.+|+..+
T Consensus 2 l~~eI~~~~~~~~~~~~~~l~~~~~~L~~a~~~l~~~t~~l~~~~~~---~~~~~~a~A~~yL~~~ 64 (130)
T PF12806_consen 2 LLAEIQAFIAEAAASGDPELAALAAALQQALEALREATAWLLAQAAA---DPELAGAAAVDYLMLF 64 (130)
T ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHhhHHHHHHHH
Confidence 34455555555542 55555555566666666666666654321 2333444444444443
No 246
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.85 E-value=8.8e+02 Score=25.62 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 001663 885 SDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSARE 964 (1035)
Q Consensus 885 le~L~~dv~kLekgL~kI~eelq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~ke 964 (1035)
.+....++..|.+.|..++..+. ..-.+++.|+..+..+...+.++-..|+-....+
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~-----------------------~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~d 78 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVS-----------------------EVIEEVDKLEKRERQARQRLAEVSRNFDRYSEED 78 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHH
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 001663 965 EAHPFRIFMVVRDFLTVLDRVCKEVGMINERT 996 (1035)
Q Consensus 965 e~~P~~fF~il~dFl~~~dka~kEv~k~~eR~ 996 (1035)
++++...-.....++..+++|+
T Consensus 79 ----------ik~AYe~A~~lQ~~L~~~re~E 100 (159)
T PF05384_consen 79 ----------IKEAYEEAHELQVRLAMLRERE 100 (159)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHH
No 247
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.71 E-value=5.3e+02 Score=32.61 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001663 931 MAEEEIIRIQAHESVALSLVKEITEYFHG 959 (1035)
Q Consensus 931 ~Ae~eI~~Lq~~~~~a~~~~kel~eYFGE 959 (1035)
..+.++..+++... +..+++..|+++
T Consensus 266 ~Le~ei~~le~e~~---e~~~~l~~l~~~ 291 (650)
T TIGR03185 266 QLERQLKEIEAARK---ANRAQLRELAAD 291 (650)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhcc
Confidence 33444444443333 334445555543
No 248
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=20.67 E-value=5.4e+02 Score=31.64 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=13.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHH
Q 001663 967 HPFRIFMVVRDFLTVLDRVCKE 988 (1035)
Q Consensus 967 ~P~~fF~il~dFl~~~dka~kE 988 (1035)
+-.++|..|++.+..+-....|
T Consensus 168 ~i~~vF~~Lk~~L~~ll~kv~~ 189 (497)
T COG2317 168 DVDRVFAELKKELVPLLDKVLE 189 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888888877665433333
No 249
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.62 E-value=1.6e+03 Score=27.41 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=28.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHhcccc
Q 001663 751 TNFESEVEYLKKSFETLEAACEELRNSR-MFLKLLEAVLKTGNRM 794 (1035)
Q Consensus 751 ~~F~~~l~~L~~~L~~l~~A~~eLr~S~-~L~~LL~iILaiGNfL 794 (1035)
..+...+..+...|..+....+.|..-+ .=+.+|..+|+.-++|
T Consensus 83 ~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 83 IETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566666667766666666665433 5566777777777766
No 250
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.55 E-value=1.3e+02 Score=27.70 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 001663 123 ILAFASVSSALVVGGILVFFYCRKR 147 (1035)
Q Consensus 123 ~~ais~~~~~~~~~~~~~~~~~~~r 147 (1035)
++||-.++.|+++..+.-||+-||-
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444455555556667766554
No 251
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.49 E-value=1.1e+02 Score=31.76 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=8.1
Q ss_pred CchhHHHHHHHHHHH
Q 001663 117 SSQKLLILAFASVSS 131 (1035)
Q Consensus 117 ~~~~l~~~ais~~~~ 131 (1035)
.++||+++++.++++
T Consensus 14 ~kkkl~ii~l~~l~l 28 (162)
T PRK07021 14 KKRKLWLIILILLLL 28 (162)
T ss_pred CccchhHHHHHHHHH
Confidence 466666555544444
No 252
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=20.41 E-value=3.5e+02 Score=25.64 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCC-cchhhhHHHHHHHHHHHHHHHHHHHH
Q 001663 887 VLSSEVSKLSRGLGNIGEVVQLNEAMGM-DESRKKFSESMNRFMKMAEEEIIRIQ 940 (1035)
Q Consensus 887 ~L~~dv~kLekgL~kI~eelq~~e~~~~-~e~~dkF~e~M~~Fl~~Ae~eI~~Lq 940 (1035)
+|...+..|+..|..+++.+...+.... ..-...=...=+.|+..++.+|..++
T Consensus 43 eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 43 ELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555566666666666666655442100 00011223445567777777766653
No 253
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=20.37 E-value=5.4e+02 Score=30.13 Aligned_cols=112 Identities=24% Similarity=0.406 Sum_probs=63.5
Q ss_pred HHHHHhhhcccccCCChHHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcHHHHHHHHHHH
Q 001663 710 ERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKS-FETLEAACEELRNSRMFLKLLEAVL 788 (1035)
Q Consensus 710 i~~Lkey~gd~p~~L~~aEqFll~L~~IP~~~~RL~allfk~~F~~~l~~L~~~-L~~l~~A~~eLr~S~~L~~LL~iIL 788 (1035)
+-.+++.+.|+ .+++.-+.|.++.+ ...|.|+..|.+.++.|-.. |+.-..|...+-+| ..||.++|
T Consensus 25 e~~VREATNdD--PWGPsG~lMgeIae-------aTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKS---LiLLaYLi 92 (499)
T KOG2057|consen 25 EMDVREATNDD--PWGPSGPLMGEIAE-------ATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKS---LILLAYLI 92 (499)
T ss_pred HHHHHhhccCC--CCCCccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHH
Confidence 34577777765 68888888887763 34566777888777665433 33333333333222 23455555
Q ss_pred HhccccccCCCCCceeeecccccc--ccccccCCCCCccHHHHHHHHHHH
Q 001663 789 KTGNRMNVGTNRGDAHAFKLDTLL--KLVDVKGADGKTTLLHFVVQEIIR 836 (1035)
Q Consensus 789 aiGNfLN~gt~rG~A~GFkLsSL~--KL~dtKs~D~k~TLLhyLv~~I~r 836 (1035)
.-|----... ...+.+.|-.|. ++.|-++.|...++-|-|.+ |++
T Consensus 93 kNGSER~Vqe--AREh~YdLR~LEnYhfiDEhGKDQGINIR~kVKe-ilE 139 (499)
T KOG2057|consen 93 KNGSERFVQE--AREHAYDLRRLENYHFIDEHGKDQGINIRHKVKE-ILE 139 (499)
T ss_pred hcccHHHHHH--HHHHHHHHHhhhhccchhhhCccccccHHHHHHH-HHH
Confidence 5222111111 233555665554 56677888888898888754 543
No 254
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=20.25 E-value=1.3e+02 Score=28.62 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcc
Q 001663 124 LAFASVSSALVVGGILVFFYCRKRRQ 149 (1035)
Q Consensus 124 ~ais~~~~~~~~~~~~~~~~~~~r~~ 149 (1035)
+|.++....++.+++.+.+||.|.+-
T Consensus 20 iA~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 20 IAMGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred HhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 33333333344444444556555443
No 255
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=20.24 E-value=1.2e+03 Score=25.91 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 001663 924 SMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINER 995 (1035)
Q Consensus 924 ~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~eR 995 (1035)
.++.=+..++.+....+.++..+.+..++=+..|..+ + -.+|=..|..|+...-...+|+-..+|.
T Consensus 163 ~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~e--r----~~dfk~~l~~fles~ie~qke~ie~We~ 228 (234)
T cd07664 163 QAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKE--R----VKDFKTVIIKYLESLVQTQQQLIKYWEA 228 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566677777777778888877777777778532 1 1346667778887777777777666665
No 256
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.22 E-value=8.5e+02 Score=30.93 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 001663 921 FSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINE 994 (1035)
Q Consensus 921 F~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka~kEv~k~~e 994 (1035)
-...|..-+..+..+|+.|-+..+.+...|-.+++-.++-| +|.-.+.-...-+...+++-.|++++.+
T Consensus 60 k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaP-----DP~pll~sa~~~l~k~~~~~~e~~~lk~ 128 (629)
T KOG0963|consen 60 KLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAP-----DPVPLLASAAELLNKQQKASEENEELKE 128 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCC-----CCchHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 45677788888999999999999999999999999888754 3444565555666666666666665544
No 257
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.04 E-value=3e+02 Score=33.56 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHH
Q 001663 918 RKKFSESMNRFMKM 931 (1035)
Q Consensus 918 ~dkF~e~M~~Fl~~ 931 (1035)
..+|.+.|..+++-
T Consensus 67 ~~~l~e~l~eiy~p 80 (460)
T KOG3771|consen 67 SKKLAESLQEIYEP 80 (460)
T ss_pred HHHHHHHHHHhcCc
Confidence 45555655555544
Done!