Query 001663
Match_columns 1035
No_of_seqs 247 out of 1084
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 15:48:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001663.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_962-965//hhsearch_pdb/001663hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j1d_G DAAM1, disheveled-assoc 1.0 1 1 604.9 41.7 373 589-992 11-398 (483)
2 3obv_E Protein diaphanous homo 1.0 1 1 593.6 38.9 374 589-993 6-387 (457)
3 4eah_A Formin-like protein 3, 1.0 1 1 592.0 36.1 379 574-995 3-386 (402)
4 1ux5_A BNI1 protein; structura 1.0 1 1 561.7 23.4 369 589-995 5-404 (411)
5 1v9d_A Diaphanous protein homo 1.0 1 1 524.7 33.2 314 650-994 4-317 (340)
6 3iot_A Maltose-binding protein 1.0 1 1 34.7 0.0 11 975-985 377-387 (449)
7 2z73_A Rhodopsin; visual pigme 1.0 1 1 28.9 0.0 57 511-567 389-445 (448)
8 2ks1_B Epidermal growth factor 1.0 1 1 27.5 3.1 30 122-151 13-42 (44)
9 2l2t_A Receptor tyrosine-prote 1.0 1 1 27.3 4.6 32 121-152 11-42 (44)
10 2l9u_A Receptor tyrosine-prote 1.0 1 1 26.4 3.9 31 122-152 8-38 (40)
No 1
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=1.00 E-value=1 Score=604.86 Aligned_cols=373 Identities=25% Similarity=0.399 Sum_probs=335.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHCCCCCCC--------CCCC-C-CC-CCCCCCCCCC
Q ss_conf 4787532101011347887641112456634--6789999987510699999--------9999-9-98-7789999974
Q 001663 589 LKPKLKPLHWDKVRASSDREMVWDHLRSSSF--KLNEEMIETLFIVNTPSSK--------PSQT-T-PR-TVLPTPNSEN 655 (1035)
Q Consensus 589 pk~KLK~LhW~KI~~~~~k~TIW~~l~~~~~--~lDed~LE~LF~~k~~~~k--------~k~~-~-~r-~~~~~~~k~i 655 (1035)
|+.+||+|||+||....+++|||+++++..+ .+|+++||++|+++..... .+.. . .. ....++.+++
T Consensus 11 P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~kk~~~v 90 (483)
T 2j1d_G 11 PTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKEL 90 (483)
T ss_dssp CSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC-----------------------------CCB
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998896934898101259866758731211446999999998512033433344433233346643222223577743
Q ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC-CCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 1038457998999886249998999999982898-998989999999609996999998741013346899388999998
Q 001663 656 RVLDPKKSQNIAILLRALNVTIEEVCEALLEGNA-DTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAV 734 (1035)
Q Consensus 656 sVLD~KRAQNIaI~L~klkls~eeI~~AIl~~D~-~~L~~E~Le~Llk~lPt~EE~~~Lke~~gd~p~~L~~aEqFL~~L 734 (1035)
+|||+||+|||+|+|++|+++.++|++||+.||. +.|+.|.|+.|++++|++||+.+|++|.+|. ..|+.+|||+++|
T Consensus 91 ~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~-~~L~~aEqFl~~l 169 (483)
T 2j1d_G 91 SVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHEL-DRMAKADRFLFEM 169 (483)
T ss_dssp CCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCG-GGBCHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHCCHHHHHHHHH
T ss_conf 227778898999998437989899999998168524589999999998499979999998725682-3148899999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 18446898999999999769999999998999999999998218899999999971543456788884344403230010
Q 001663 735 LDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKL 814 (1035)
Q Consensus 735 ~~IP~l~~RL~allfk~~F~~~~~~L~~~L~~l~~A~eeLr~S~~L~~LL~iILaiGNfLN~Gt~rG~A~GFkLsSL~KL 814 (1035)
++||+|+.||+||+|+.+|++.+.+|...|..|..||++|++|+.|+.||++||++|||||+| .||+|+||+|++|.||
T Consensus 170 ~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~sL~KL 248 (483)
T 2j1d_G 170 SRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLNKI 248 (483)
T ss_dssp HTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGGGGGGG
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC-CCCCCEEEEHHHHHHH
T ss_conf 577648888999999999999999999999999999999983568999999999986553368-7777323516899865
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 123578-9972078999999998303435689899999983047875306651034100034479961279799999999
Q 001663 815 VDVKGA-DGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVS 893 (1035)
Q Consensus 815 ~dvKs~-D~k~TLLhyIv~~Iir~e~~~ls~~n~~~~s~f~dD~~~~~lgL~~V~~Ls~EL~~VkkAAkvdle~L~~ev~ 893 (1035)
.|||++ |+++|||||||+.|.++ ++.+.+|.+||.+|.+|++|+++.|..++.
T Consensus 249 ~d~Ks~~d~k~TLLhylv~~v~~~--------------------------~p~l~~f~~eL~~v~~Askv~~~~l~~~~~ 302 (483)
T 2j1d_G 249 ADTKSSIDKNITLLHYLITIVENK--------------------------YPSVLNLNEELRDIPQAAKVNMTELDKEIS 302 (483)
T ss_dssp GGSBCSSCTTCBHHHHHHHHHHHH--------------------------CGGGGGHHHHTTTHHHHHTCCHHHHHHHHH
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHH--------------------------CCHHHCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 202057899864999999999974--------------------------830622277776188873289999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 99997999999999754128750246689999999999999999999999999999999997606998877578110458
Q 001663 894 KLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFM 973 (1035)
Q Consensus 894 kL~~~L~ki~~~lq~~e~~~~~e~~d~F~e~M~~Fl~~Ae~ei~~Lq~~~~~a~~~~kel~~YFGED~~kee~~P~~fF~ 973 (1035)
+|.++++.++.+++...... .+..+.|.+.|..|+..|+.++..|+..+..|.+.|++++.|||||+.+ ..+.+||.
T Consensus 303 ~L~~~l~~v~~~l~~~~~~~-~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~~--~~~~~fF~ 379 (483)
T 2j1d_G 303 TLRSGLKAVETELEYQKSQP-PQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGK--IQPDEFFG 379 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTSC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTS--CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHH
T ss_conf 99999999999999865268-8720058999999999999999999999999999999999993989787--88999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999885
Q 001663 974 VVRDFLTVLDRVCKEVGMI 992 (1035)
Q Consensus 974 il~dFl~~ldka~kEi~k~ 992 (1035)
+|.+|+..|++|++|+.++
T Consensus 380 ~~~~F~~~f~~A~~en~~~ 398 (483)
T 2j1d_G 380 IFDQFLQAVSEAKQENENM 398 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 2
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=1.00 E-value=1 Score=593.57 Aligned_cols=374 Identities=29% Similarity=0.426 Sum_probs=335.5
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC--CCHHHHHHHHHCCCCCCCCCC---C--CCCCCCCCCCCCCCCCCH
Q ss_conf 478753210101134788-76411124566346--789999987510699999999---9--998778999997410384
Q 001663 589 LKPKLKPLHWDKVRASSD-REMVWDHLRSSSFK--LNEEMIETLFIVNTPSSKPSQ---T--TPRTVLPTPNSENRVLDP 660 (1035)
Q Consensus 589 pk~KLK~LhW~KI~~~~~-k~TIW~~l~~~~~~--lDed~LE~LF~~k~~~~k~k~---~--~~r~~~~~~~k~isVLD~ 660 (1035)
|+.+||+|||++|....+ ++|||+++++..+. .+++.||.+|+++....+++. . .++....++.++++|||+
T Consensus 6 P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~lLD~ 85 (457)
T 3obv_E 6 PEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKVLDS 85 (457)
T ss_dssp CSSCBCCCCCCEECTTTTCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCSSSCH
T ss_pred CCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH
T ss_conf 99997088753578655678850000762113674589999988545655434555544453321112367863575677
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 57998999886249998999999982898998989999999609996999998741013346899388999998184468
Q 001663 661 KKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFA 740 (1035)
Q Consensus 661 KRAQNIaI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPt~EE~~~Lke~~gd~p~~L~~aEqFL~~L~~IP~l 740 (1035)
||+|||+|+|++|++++++|++||+.||.+.|+.|.|+.|++++|++||+.+|++|.++. ..|+.+|||+++|+.||+|
T Consensus 86 kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~-~~L~~~EqF~~~l~~Ip~~ 164 (457)
T 3obv_E 86 KTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY-DDLAESEQFGVVMGTVPRL 164 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSG-GGSCHHHHHHHHHTSSTTH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHCCHHHHHHHHHHCCCCH
T ss_conf 788689999833698999999999938835479999999998697989999999824672-0058799999999765648
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 98999999999769999999998999999999998218899999999971543456788884344403230010123578
Q 001663 741 FKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGA 820 (1035)
Q Consensus 741 ~~RL~allfk~~F~~~~~~L~~~L~~l~~A~eeLr~S~~L~~LL~iILaiGNfLN~Gt~rG~A~GFkLsSL~KL~dvKs~ 820 (1035)
..||+||+|+.+|++.+.+|...|..|..||++|++|+.|+.||++||++|||||+|+.+|+|+||+|++|.||.|||++
T Consensus 165 ~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~ 244 (457)
T 3obv_E 165 RPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSA 244 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCBCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCC
T ss_conf 99999999999889999999999999999999987067799999999997425016886777435733788877750067
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 99720789999999983034356898999999830478753066510341000344799612797999999999999799
Q 001663 821 DGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLG 900 (1035)
Q Consensus 821 D~k~TLLhyIv~~Iir~e~~~ls~~n~~~~s~f~dD~~~~~lgL~~V~~Ls~EL~~VkkAAkvdle~L~~ev~kL~~~L~ 900 (1035)
|+++|||||||+.+.++ ++.+.+|.+||.+|.+|++|++++|..++.+|.++++
T Consensus 245 d~k~TLLh~l~~~v~~~--------------------------~p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~ 298 (457)
T 3obv_E 245 DQKMTLLHFLAELCEND--------------------------HPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIA 298 (457)
T ss_dssp STTCBHHHHHHHHHHHH--------------------------CGGGGGHHHHCTTHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHC--------------------------CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 88841899999999970--------------------------8301377224243776512799999999999999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999997541287502466899999999999999999999999999999999976069988775781104589999999
Q 001663 901 NIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLT 980 (1035)
Q Consensus 901 ki~~~lq~~e~~~~~e~~d~F~e~M~~Fl~~Ae~ei~~Lq~~~~~a~~~~kel~~YFGED~~kee~~P~~fF~il~dFl~ 980 (1035)
.++.+++.... ..+..++|.+.|..|+..|++++..|+..++.|.+.|+++++|||||+.+ ..+.+||.+|.+|+.
T Consensus 299 ~v~~~l~~~~~--~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~--~~~~eFF~~~~~F~~ 374 (457)
T 3obv_E 299 DVERDVQNFPA--ATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK--LSVEEFFMDLHNFRN 374 (457)
T ss_dssp HHHHHHHSCCC--CSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHH
T ss_conf 99999984457--73414779999999999999999999999999999999999985779787--999999999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999998852
Q 001663 981 VLDRVCKEVGMIN 993 (1035)
Q Consensus 981 ~ldka~kEi~k~~ 993 (1035)
.|++|++|+.+..
T Consensus 375 ~fkkA~~eN~~r~ 387 (457)
T 3obv_E 375 MFLQAVKENQKRR 387 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 3
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=1.00 E-value=1 Score=592.03 Aligned_cols=379 Identities=23% Similarity=0.388 Sum_probs=333.1
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHCCCCCCCCCCC-CCCCCCCC
Q ss_conf 9999986310110134787532101011347887641112456634--67899999875106999999999-99877899
Q 001663 574 LPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSF--KLNEEMIETLFIVNTPSSKPSQT-TPRTVLPT 650 (1035)
Q Consensus 574 LP~~~k~~~~~~~~~pk~KLK~LhW~KI~~~~~k~TIW~~l~~~~~--~lDed~LE~LF~~k~~~~k~k~~-~~r~~~~~ 650 (1035)
+|.|++++. +.. ++.|||+|||++|...++++|||+++++..+ .+|+++||++|+++......... .++....+
T Consensus 3 ~~~~~~~Kk--~~~-~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~~~k 79 (402)
T 4eah_A 3 GLSAIRIKK--PIK-TKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQK 79 (402)
T ss_dssp -------CC--CCC-CSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC-----------------
T ss_pred CCCCCCCCC--CCC-CCCCCCCCCCEECCHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCC
T ss_conf 987899899--999-88777786854597675358605577603430456899999997412467765520000233346
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC--CCCCCHHH
Q ss_conf 9997410384579989998862499989999999828989989899999996099969999987410133--46899388
Q 001663 651 PNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDES--LTKLGPAE 728 (1035)
Q Consensus 651 ~~k~isVLD~KRAQNIaI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPt~EE~~~Lke~~gd~--p~~L~~aE 728 (1035)
..++++|||+||+|||+|+|++|++++++|++||+.||.+.|+.|.|+.|++++|++||+..|++|.++. +..|+++|
T Consensus 80 ~~~~v~lLd~kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~E 159 (402)
T 4eah_A 80 AASKVTLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAED 159 (402)
T ss_dssp ---CBCSSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHH
T ss_pred CCCCEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCHHH
T ss_conf 88712557778998999998637989999999998088344899999999860989799999998643578644416799
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
Q ss_conf 99999818446898999999999769999999998999999999998218899999999971543456788884344403
Q 001663 729 KFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKL 808 (1035)
Q Consensus 729 qFL~~L~~IP~l~~RL~allfk~~F~~~~~~L~~~L~~l~~A~eeLr~S~~L~~LL~iILaiGNfLN~Gt~rG~A~GFkL 808 (1035)
||+++|+.||+|.+||+||+|+.+|++.+.+|.+.+..+..||++|++|+.|+.||++||++|||||+| .||+|.||+|
T Consensus 160 qF~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL 238 (402)
T 4eah_A 160 RFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKL 238 (402)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCG
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC-CCCCCCEEEH
T ss_conf 999999735639999999999999999999999999999999999871488999999999874132678-7776232417
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHH
Q ss_conf 23001012357899720789999999983034356898999999830478753066510341000344799612797999
Q 001663 809 DTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVL 888 (1035)
Q Consensus 809 sSL~KL~dvKs~D~k~TLLhyIv~~Iir~e~~~ls~~n~~~~s~f~dD~~~~~lgL~~V~~Ls~EL~~VkkAAkvdle~L 888 (1035)
++|.||.|||++|+++|||||||+.+.++ ++.+.+|.+||..|.+|++|+++.|
T Consensus 239 ~sL~KL~d~Ks~d~k~TLLh~l~~~~~~~--------------------------~p~l~~f~~eL~~v~~Aa~v~~~~l 292 (402)
T 4eah_A 239 QSLDLLLDTKSTDRKMTLLHFIALTVKEK--------------------------YPELANFWQELHFVEKAAAVSLENV 292 (402)
T ss_dssp GGGGSSSSSBCTTSSSBHHHHHHHHHHHH--------------------------CGGGGTCSTTCCSHHHHHTCCHHHH
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 88888884457889862999999999963--------------------------0899877665533998964999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999979999999997541287502466899999999999999999999999999999999976069988775781
Q 001663 889 SSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHP 968 (1035)
Q Consensus 889 ~~ev~kL~~~L~ki~~~lq~~e~~~~~e~~d~F~e~M~~Fl~~Ae~ei~~Lq~~~~~a~~~~kel~~YFGED~~kee~~P 968 (1035)
..++.+|+++++.++.++... + ...|..|+..|++++..|+..++.+++.|+++++|||||+++ ..+
T Consensus 293 ~~d~~~L~~~l~~~~~e~~~~---------d--~~~l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~--~~~ 359 (402)
T 4eah_A 293 LLDVKELGRGMELIRRECSIH---------D--NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKT--TPP 359 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---------C--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT--CCH
T ss_pred HHHHHHHHHHHHHHHHHHCCC---------C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCH
T ss_conf 999999999999999985303---------2--489999999999999999999999999999999994889787--999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 104589999999999999999885210
Q 001663 969 FRIFMVVRDFLTVLDRVCKEVGMINER 995 (1035)
Q Consensus 969 ~~fF~il~dFl~~ldka~kEi~k~~eR 995 (1035)
.+||.+|.+|+..|++|++|+.+.+++
T Consensus 360 ~~fF~~~~~F~~~fk~A~~en~~r~~~ 386 (402)
T 4eah_A 360 SVFFPVFVRFIRSYKEAEQENEARKKQ 386 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 4
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=1.00 E-value=1 Score=561.67 Aligned_cols=369 Identities=19% Similarity=0.272 Sum_probs=317.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C----CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 47875321010113478876411124566346--7----89999987510699999999999877899999741038457
Q 001663 589 LKPKLKPLHWDKVRASSDREMVWDHLRSSSFK--L----NEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKK 662 (1035)
Q Consensus 589 pk~KLK~LhW~KI~~~~~k~TIW~~l~~~~~~--l----Ded~LE~LF~~k~~~~k~k~~~~r~~~~~~~k~isVLD~KR 662 (1035)
|+.|||+|||+||.. .++|||+++++..+. + |+++||++|+++..... ..++ .+..++++|||+||
T Consensus 5 P~~klK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~---~~~k---~~~~~~v~lLd~kr 76 (411)
T 1ux5_A 5 PHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSL---ASKR---KEDLQKITFLSRDI 76 (411)
T ss_dssp CSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHH---HHHH---HHTTTSBCCSCHHH
T ss_pred CCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCC---CCCC---CCCCCEEEECCHHH
T ss_conf 999988868415999--999907677617778765110229999998434656543---4466---67777025247678
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHHHCCCCCCCCHHH-HHH------------HH-HHCCCHHHHHH------HHHHHCCCC
Q ss_conf 99899988624-99989999999828989989899-999------------99-60999699999------874101334
Q 001663 663 SQNIAILLRAL-NVTIEEVCEALLEGNADTLGTEL-LES------------LL-KMAPTKEEERK------LKEYKDESL 721 (1035)
Q Consensus 663 AQNIaI~L~kl-kls~eeI~~AIl~~D~~~L~~E~-Le~------------Ll-k~lPt~EE~~~------Lke~~gd~p 721 (1035)
+|||+|+|++| ++++++|++||+.||.+.|+.+. ++. |+ +++|+.+|.+. ++.|.||.
T Consensus 77 aqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~~~~~d~- 155 (411)
T 1ux5_A 77 SQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDP- 155 (411)
T ss_dssp HHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCS-
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH-
T ss_conf 9989899874179899999999980596536978999870236777667899985389944678887788765336995-
Q ss_pred CCCCHHHHHHHHHH-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 68993889999981-84-46898999999999769999999998999999999998218899999999971543456788
Q 001663 722 TKLGPAEKFLKAVL-DV-PFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTN 799 (1035)
Q Consensus 722 ~~L~~aEqFL~~L~-~I-P~l~~RL~allfk~~F~~~~~~L~~~L~~l~~A~eeLr~S~~L~~LL~iILaiGNfLN~Gt~ 799 (1035)
..|+++|||+++++ .| +++.+||+||+|+.+|++.+.+|...+..+..||++|++|+.|+.||++||++|||||+|+.
T Consensus 156 ~~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~ 235 (411)
T 1ux5_A 156 NDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSK 235 (411)
T ss_dssp TTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 66788889999999850266999999999999889999999999999999999998465899999999998380248998
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 88434440323001012357899720789999999983034356898999999830478753066510341000344799
Q 001663 800 RGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKK 879 (1035)
Q Consensus 800 rG~A~GFkLsSL~KL~dvKs~D~k~TLLhyIv~~Iir~e~~~ls~~n~~~~s~f~dD~~~~~lgL~~V~~Ls~EL~~Vkk 879 (1035)
+|+||+|++|.||.|||++|+++|||||||+.+.++ ++.+.+|.+||.+|.+
T Consensus 236 --~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~--------------------------~p~l~~f~~eL~~v~~ 287 (411)
T 1ux5_A 236 --QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN--------------------------YPSFNDFLSELEPVLD 287 (411)
T ss_dssp --CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH--------------------------CGGGGGHHHHTHHHHH
T ss_pred --CEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH--------------------------CCCCCCCCCHHHHHHH
T ss_conf --805762468888887008889856999999999986--------------------------9202154003544999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6127979999999999997999999999754128--75024668999999999999999999999999999999999760
Q 001663 880 AAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMG--MDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYF 957 (1035)
Q Consensus 880 AAkvdle~L~~ev~kL~~~L~ki~~~lq~~e~~~--~~e~~d~F~e~M~~Fl~~Ae~ei~~Lq~~~~~a~~~~kel~~YF 957 (1035)
|++|+++.|..++.+|.+++++++.+++...... ..+..++|...|..|+..|+.++..|+..++.+.+.|++++.||
T Consensus 288 Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yf 367 (411)
T 1ux5_A 288 VVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTY 367 (411)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97789999999999999999999999983257752235852378999999999999999999999999999999999994
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69988775781104589999999999999999885210
Q 001663 958 HGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINER 995 (1035)
Q Consensus 958 GED~~kee~~P~~fF~il~dFl~~ldka~kEi~k~~eR 995 (1035)
|||++. ...+.+||.+|.+|+..|++|++|+.+..|.
T Consensus 368 ged~~~-~~~~~~fF~~~~~F~~~f~~a~~en~~~~e~ 404 (411)
T 1ux5_A 368 GEDSGD-KFAKISFFKKFADFINEYKKAQAQNLAAEEE 404 (411)
T ss_dssp TCCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889878-7898999999999999999999999999999
No 5
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=1.00 E-value=1 Score=524.69 Aligned_cols=314 Identities=31% Similarity=0.448 Sum_probs=292.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99997410384579989998862499989999999828989989899999996099969999987410133468993889
Q 001663 650 TPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEK 729 (1035)
Q Consensus 650 ~~~k~isVLD~KRAQNIaI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPt~EE~~~Lke~~gd~p~~L~~aEq 729 (1035)
++.++++|||+||+|||+|+|++|++++++|++||+.||.+.|+.|.|+.|++++||+||+..|++|.++. ..|+.+||
T Consensus 4 kk~~~i~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~-~~L~~~Eq 82 (340)
T 1v9d_A 4 KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY-DDLAESEQ 82 (340)
T ss_dssp --CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGG-GGSCHHHH
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCH-HHCCHHHH
T ss_conf 77780155477888589999800697999999999958820099999999970499989999999821884-22688989
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC
Q ss_conf 99998184468989999999997699999999989999999999982188999999999715434567888843444032
Q 001663 730 FLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLD 809 (1035)
Q Consensus 730 FL~~L~~IP~l~~RL~allfk~~F~~~~~~L~~~L~~l~~A~eeLr~S~~L~~LL~iILaiGNfLN~Gt~rG~A~GFkLs 809 (1035)
|+++|+.||+|..||+||+|+.+|++.+.+|.+.+.++..||++|++|+.|+.||++||++|||||+|+.+|+|+||+|+
T Consensus 83 F~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~ 162 (340)
T 1v9d_A 83 FGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNIS 162 (340)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------C
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHH
T ss_conf 99999778977999999999966899999999999999999999984858999999999975857888887763343148
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHH
Q ss_conf 30010123578997207899999999830343568989999998304787530665103410003447996127979999
Q 001663 810 TLLKLVDVKGADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLS 889 (1035)
Q Consensus 810 SL~KL~dvKs~D~k~TLLhyIv~~Iir~e~~~ls~~n~~~~s~f~dD~~~~~lgL~~V~~Ls~EL~~VkkAAkvdle~L~ 889 (1035)
+|.||.|||++|+++|||||||+.+.++ ++.+.+|.+||.+|.+|++|+++.|.
T Consensus 163 sL~KL~d~Ks~d~k~TLLh~lv~~~~~~--------------------------~p~l~~f~~eL~~v~~Askvs~~~l~ 216 (340)
T 1v9d_A 163 FLCKLRDTKSADQKMTLLHFLAELCEND--------------------------HPEVLKFPDELAHVEKASRVSAENLQ 216 (340)
T ss_dssp CHHHHHHSBCSSTTSBHHHHHHHHHHHS--------------------------CCTTSSGGGGCTTHHHHHHCCHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHH--------------------------CCHHCCCHHHHHHHHHHHHCCHHHHH
T ss_conf 8886554107899762999999999973--------------------------90521663578859999757799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999799999999975412875024668999999999999999999999999999999999760699887757811
Q 001663 890 SEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPF 969 (1035)
Q Consensus 890 ~ev~kL~~~L~ki~~~lq~~e~~~~~e~~d~F~e~M~~Fl~~Ae~ei~~Lq~~~~~a~~~~kel~~YFGED~~kee~~P~ 969 (1035)
.++.+|.+++..++..++.... ..+..++|.+.|..|+..|++++..|+..++.+.+.|+++++|||||+++ ..+.
T Consensus 217 ~~l~~l~~~~~~~~~~l~~~~~--~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~--~~~~ 292 (340)
T 1v9d_A 217 KSLDQMKKQIADVERDVQNFPA--ATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK--LSVE 292 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC--CSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT--SCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCHH
T ss_conf 9999999999999999985403--55400889999888999999999999999999999999999982989887--9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0458999999999999999988521
Q 001663 970 RIFMVVRDFLTVLDRVCKEVGMINE 994 (1035)
Q Consensus 970 ~fF~il~dFl~~ldka~kEi~k~~e 994 (1035)
+||.+|.+|+..|++||+|+.+.++
T Consensus 293 ~fF~~~~~F~~~f~~a~~en~~r~e 317 (340)
T 1v9d_A 293 EFFMDLHNFRNMFLQAVKENQKRRE 317 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999
No 6
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=1.00 E-value=1 Score=34.65 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q 001663 975 VRDFLTVLDRV 985 (1035)
Q Consensus 975 l~dFl~~ldka 985 (1035)
+..+...|++.
T Consensus 377 ~~~~~~~~~~~ 387 (449)
T 3iot_A 377 LMKAFESLKSF 387 (449)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999864
No 7
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=1.00 E-value=1 Score=28.91 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999999860000557788644688998989999889999652236788
Q 001663 511 VPPPPPPPPPPPPPPLVLSRQRKQWELPVVSTPAGQAVSQPPALIPPSRPFVMQNTT 567 (1035)
Q Consensus 511 ~~~pp~pppppPPpP~p~~~~~~~~~~p~~~~p~~~~~~~pP~~~PP~~p~~~~~~~ 567 (1035)
.+++.+|||+++||+..|+.+-..-+-|.+..|++++..+|++.+||++|...+.++
T Consensus 389 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (448)
T 2z73_A 389 PPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDNQA 445 (448)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 878999876788988988789897697989989789898989999888778999999
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=27.54 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999876543212589
Q 001663 122 LILAFASVSSALVVGGILVFFYCRKRRQNG 151 (1035)
Q Consensus 122 ~~~ais~~~~~~~~~~~~~~~~~~~r~~~~ 151 (1035)
+|..+-.+++.++++.+++|||+|||++.+
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 886404799999999999999851237640
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=27.25 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 89999999999999999998765432125898
Q 001663 121 LLILAFASVSSALVVGGILVFFYCRKRRQNGL 152 (1035)
Q Consensus 121 l~~~ais~~~~~~~~~~~~~~~~~~~r~~~~~ 152 (1035)
.+|..+-.+++.++++.+++|||+|||+++++
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 58875027999999999999997514666532
No 10
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=26.35 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999999998765432125898
Q 001663 122 LILAFASVSSALVVGGILVFFYCRKRRQNGL 152 (1035)
Q Consensus 122 ~~~ais~~~~~~~~~~~~~~~~~~~r~~~~~ 152 (1035)
.|+.+-++++.+.++++..|+|||-||.|.|
T Consensus 8 malt~i~gl~vif~~lg~tflywrgrrhhhh 38 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTFLYWRGRRHHHH 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 9999999899999986764688735544546
Done!