Query 001664
Match_columns 1035
No_of_seqs 465 out of 2021
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 2E-124 5E-129 1105.2 45.8 822 16-913 1-854 (913)
2 KOG0243 Kinesin-like protein [ 100.0 1.7E-89 3.6E-94 821.4 71.4 398 6-433 47-469 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 5E-92 1.1E-96 814.3 29.5 357 6-398 3-368 (574)
4 KOG0245 Kinesin-like protein [ 100.0 2.2E-90 4.8E-95 810.7 32.6 389 7-423 3-416 (1221)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 8.7E-86 1.9E-90 740.0 39.8 338 5-380 4-345 (607)
6 PLN03188 kinesin-12 family pro 100.0 1.3E-83 2.7E-88 776.2 34.7 354 7-394 97-468 (1320)
7 KOG0242 Kinesin-like protein [ 100.0 1.9E-80 4.1E-85 746.5 29.9 350 6-398 4-364 (675)
8 cd01373 KISc_KLP2_like Kinesin 100.0 1.6E-79 3.4E-84 696.7 30.6 325 9-366 2-337 (337)
9 KOG0241 Kinesin-like protein [ 100.0 7.1E-79 1.5E-83 698.7 34.4 362 7-398 3-383 (1714)
10 cd01370 KISc_KIP3_like Kinesin 100.0 5.1E-79 1.1E-83 692.8 29.7 322 9-366 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 5E-77 1.1E-81 677.8 30.7 326 9-364 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.2E-76 2.5E-81 678.8 31.5 336 8-373 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.5E-76 5.3E-81 675.9 30.9 333 8-375 2-352 (352)
14 cd01372 KISc_KIF4 Kinesin moto 100.0 3.6E-76 7.8E-81 672.2 31.2 337 8-367 1-341 (341)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 8.7E-75 1.9E-79 657.6 29.9 323 9-366 2-333 (333)
16 cd01367 KISc_KIF2_like Kinesin 100.0 1E-74 2.2E-79 653.9 29.4 307 9-364 2-322 (322)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.8E-74 4E-79 653.8 31.3 320 8-366 2-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 2.5E-73 5.4E-78 642.0 28.4 308 9-364 1-319 (319)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 6.3E-73 1.4E-77 639.9 29.6 317 9-366 1-321 (321)
20 cd01375 KISc_KIF9_like Kinesin 100.0 8.4E-73 1.8E-77 641.3 29.7 319 9-364 1-334 (334)
21 KOG0239 Kinesin (KAR3 subfamil 100.0 3.1E-72 6.7E-77 672.6 25.2 325 7-372 313-646 (670)
22 cd01366 KISc_C_terminal Kinesi 100.0 4.5E-71 9.8E-76 627.3 30.7 321 7-368 1-328 (329)
23 smart00129 KISc Kinesin motor, 100.0 1.1E-70 2.4E-75 626.0 30.2 327 9-373 1-335 (335)
24 KOG0247 Kinesin-like protein [ 100.0 2.7E-68 5.9E-73 611.5 37.4 336 8-376 31-446 (809)
25 KOG0246 Kinesin-like protein [ 100.0 4.3E-69 9.2E-74 602.1 26.7 324 5-371 205-546 (676)
26 PF00225 Kinesin: Kinesin moto 100.0 8.3E-69 1.8E-73 610.9 20.6 322 15-366 1-335 (335)
27 cd00106 KISc Kinesin motor dom 100.0 1.9E-67 4E-72 598.1 29.4 318 9-364 1-328 (328)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.9E-61 6.2E-66 576.5 29.0 290 45-374 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 6.7E-49 1.4E-53 410.2 17.5 179 64-345 8-186 (186)
30 KOG0161 Myosin class II heavy 99.9 3.1E-23 6.7E-28 267.4 47.8 451 367-911 826-1296(1930)
31 PF01576 Myosin_tail_1: Myosin 99.3 1.5E-13 3.2E-18 173.3 0.0 239 648-932 4-253 (859)
32 KOG0161 Myosin class II heavy 99.3 8.6E-07 1.9E-11 117.1 55.0 69 597-665 1159-1227(1930)
33 KOG0612 Rho-associated, coiled 98.7 0.0001 2.2E-09 92.1 41.2 255 502-809 508-773 (1317)
34 PRK02224 chromosome segregatio 98.7 0.0035 7.5E-08 81.3 57.0 66 841-907 574-639 (880)
35 PRK02224 chromosome segregatio 98.7 0.0025 5.4E-08 82.7 53.5 56 533-596 375-430 (880)
36 TIGR00606 rad50 rad50. This fa 98.7 0.0018 3.8E-08 87.2 53.2 53 379-436 577-629 (1311)
37 PRK03918 chromosome segregatio 98.5 0.013 2.8E-07 76.1 57.4 14 85-98 27-40 (880)
38 PF12128 DUF3584: Protein of u 98.5 0.017 3.7E-07 77.1 56.3 93 498-591 316-408 (1201)
39 PF07888 CALCOCO1: Calcium bin 98.5 0.0041 8.8E-08 74.0 42.9 55 853-907 403-457 (546)
40 TIGR02169 SMC_prok_A chromosom 98.3 0.015 3.2E-07 77.7 46.8 14 85-98 27-40 (1164)
41 COG1196 Smc Chromosome segrega 98.3 0.016 3.5E-07 77.2 46.4 30 66-98 12-41 (1163)
42 PF01576 Myosin_tail_1: Myosin 98.3 1.7E-07 3.6E-12 119.1 0.0 340 496-903 96-448 (859)
43 KOG4674 Uncharacterized conser 98.3 0.059 1.3E-06 71.8 54.8 232 535-766 689-948 (1822)
44 KOG4643 Uncharacterized coiled 98.3 0.034 7.4E-07 69.0 48.4 177 499-699 298-500 (1195)
45 KOG0977 Nuclear envelope prote 98.3 0.00043 9.3E-09 82.1 27.8 94 800-904 293-386 (546)
46 PF00038 Filament: Intermediat 98.2 0.019 4.1E-07 65.2 40.2 78 533-627 16-93 (312)
47 TIGR02169 SMC_prok_A chromosom 98.2 0.014 3E-07 78.0 44.5 18 535-552 191-208 (1164)
48 TIGR02168 SMC_prok_B chromosom 98.2 0.013 2.9E-07 78.0 44.4 16 83-98 25-40 (1179)
49 TIGR00606 rad50 rad50. This fa 98.2 0.09 1.9E-06 71.1 52.0 51 650-700 396-446 (1311)
50 KOG4674 Uncharacterized conser 98.2 0.085 1.9E-06 70.3 49.3 29 494-522 804-832 (1822)
51 COG5059 KIP1 Kinesin-like prot 98.2 2.7E-08 5.9E-13 120.7 -9.4 257 2-305 299-566 (568)
52 PF07888 CALCOCO1: Calcium bin 98.2 0.041 8.9E-07 65.7 41.5 162 498-693 160-324 (546)
53 PRK03918 chromosome segregatio 98.1 0.091 2E-06 68.3 56.9 13 195-207 107-119 (880)
54 KOG0971 Microtubule-associated 98.1 0.029 6.3E-07 68.6 39.1 65 633-697 289-356 (1243)
55 TIGR02168 SMC_prok_B chromosom 98.1 0.031 6.6E-07 74.7 44.3 11 318-328 55-65 (1179)
56 COG1196 Smc Chromosome segrega 98.0 0.1 2.2E-06 69.8 46.7 59 841-899 441-499 (1163)
57 KOG0971 Microtubule-associated 98.0 0.1 2.2E-06 64.2 41.4 44 652-699 400-443 (1243)
58 KOG0964 Structural maintenance 98.0 0.12 2.5E-06 64.3 42.4 228 498-765 187-425 (1200)
59 PF10174 Cast: RIM-binding pro 97.9 0.16 3.5E-06 63.8 48.2 153 497-669 373-535 (775)
60 KOG4673 Transcription factor T 97.9 0.12 2.6E-06 61.8 41.1 74 528-602 402-477 (961)
61 KOG4643 Uncharacterized coiled 97.8 0.2 4.3E-06 62.6 44.1 145 726-900 410-556 (1195)
62 KOG0612 Rho-associated, coiled 97.7 0.32 6.9E-06 62.2 40.4 124 533-656 499-631 (1317)
63 PF10174 Cast: RIM-binding pro 97.7 0.3 6.4E-06 61.6 52.6 70 596-669 239-308 (775)
64 PF12128 DUF3584: Protein of u 97.7 0.55 1.2E-05 63.1 50.0 17 82-98 18-34 (1201)
65 PRK01156 chromosome segregatio 97.7 0.46 9.9E-06 62.0 56.4 16 83-98 25-40 (895)
66 KOG0976 Rho/Rac1-interacting s 97.6 0.35 7.6E-06 58.8 50.8 59 377-440 97-155 (1265)
67 PF09726 Macoilin: Transmembra 97.6 0.014 3E-07 72.7 25.8 30 677-706 492-521 (697)
68 KOG0933 Structural maintenance 97.6 0.46 1E-05 59.6 39.1 128 535-665 677-804 (1174)
69 KOG0996 Structural maintenance 97.6 0.53 1.1E-05 60.1 38.2 19 745-763 473-491 (1293)
70 KOG0963 Transcription factor/C 97.5 0.48 1E-05 56.9 39.5 152 799-956 306-478 (629)
71 PRK04863 mukB cell division pr 97.4 1.2 2.7E-05 60.3 45.7 87 577-666 382-474 (1486)
72 PF09726 Macoilin: Transmembra 97.4 0.043 9.3E-07 68.5 26.2 111 634-766 538-651 (697)
73 KOG0977 Nuclear envelope prote 97.4 0.38 8.1E-06 57.8 32.6 28 795-822 309-336 (546)
74 PRK11637 AmiB activator; Provi 97.4 0.15 3.3E-06 60.7 29.9 53 628-680 199-251 (428)
75 KOG1029 Endocytic adaptor prot 97.3 0.52 1.1E-05 57.4 33.0 18 107-124 43-60 (1118)
76 KOG0250 DNA repair protein RAD 97.3 1 2.2E-05 57.5 46.2 41 725-765 655-696 (1074)
77 PRK04863 mukB cell division pr 97.3 1.5 3.3E-05 59.4 47.9 16 83-98 29-44 (1486)
78 PF05701 WEMBL: Weak chloropla 97.2 0.98 2.1E-05 55.2 50.6 304 572-913 121-439 (522)
79 PF09755 DUF2046: Uncharacteri 97.2 0.33 7.1E-06 54.1 27.7 35 406-440 21-55 (310)
80 KOG0994 Extracellular matrix g 97.2 1.4 2.9E-05 56.1 45.6 81 353-444 1177-1257(1758)
81 PRK11637 AmiB activator; Provi 97.1 0.26 5.6E-06 58.7 28.0 34 975-1015 393-427 (428)
82 KOG0995 Centromere-associated 97.0 1.3 2.8E-05 52.9 43.3 152 607-765 306-460 (581)
83 KOG1029 Endocytic adaptor prot 96.9 1.8 3.8E-05 53.0 36.2 64 737-824 493-556 (1118)
84 PF00038 Filament: Intermediat 96.8 1.4 3E-05 50.1 36.4 37 729-765 267-304 (312)
85 PHA02562 46 endonuclease subun 96.8 1.4 3E-05 54.3 31.9 17 82-98 28-44 (562)
86 KOG4673 Transcription factor T 96.7 2.2 4.8E-05 51.6 43.6 69 640-708 724-792 (961)
87 PF00261 Tropomyosin: Tropomyo 96.7 0.54 1.2E-05 51.4 24.5 96 533-632 132-227 (237)
88 PRK10929 putative mechanosensi 96.6 4 8.6E-05 53.8 34.8 36 666-701 201-236 (1109)
89 KOG0999 Microtubule-associated 96.6 2.3 5.1E-05 50.2 39.2 161 499-667 12-189 (772)
90 COG4942 Membrane-bound metallo 96.6 1.4 3E-05 51.4 27.1 16 680-695 224-239 (420)
91 PRK01156 chromosome segregatio 96.5 4.7 0.0001 52.8 58.0 45 856-900 677-721 (895)
92 PHA02562 46 endonuclease subun 96.5 1.6 3.5E-05 53.7 30.0 125 533-666 218-355 (562)
93 KOG0964 Structural maintenance 96.5 4 8.6E-05 51.5 34.5 81 737-824 342-425 (1200)
94 PRK11281 hypothetical protein; 96.5 4.2 9E-05 53.7 34.0 35 665-699 219-253 (1113)
95 KOG0962 DNA repair protein RAD 96.5 5.3 0.00011 52.5 41.4 377 500-909 242-673 (1294)
96 COG1579 Zn-ribbon protein, pos 96.3 0.52 1.1E-05 51.2 20.4 116 577-697 58-173 (239)
97 PF10481 CENP-F_N: Cenp-F N-te 96.1 0.39 8.4E-06 52.0 17.7 164 577-765 17-190 (307)
98 PF05667 DUF812: Protein of un 96.0 6 0.00013 49.0 37.5 41 725-765 486-526 (594)
99 KOG0996 Structural maintenance 95.9 8.5 0.00018 49.8 50.7 71 840-910 779-849 (1293)
100 COG0556 UvrB Helicase subunit 95.9 0.0049 1.1E-07 72.1 2.8 94 46-145 3-100 (663)
101 KOG0976 Rho/Rac1-interacting s 95.8 7.5 0.00016 48.0 49.2 58 597-654 279-336 (1265)
102 PF14915 CCDC144C: CCDC144C pr 95.7 4.3 9.3E-05 45.1 31.3 197 653-908 43-241 (305)
103 PRK04778 septation ring format 95.7 7.9 0.00017 48.0 41.1 126 577-708 171-310 (569)
104 KOG0946 ER-Golgi vesicle-tethe 95.3 7.6 0.00016 48.3 26.6 26 798-823 857-882 (970)
105 PF05557 MAD: Mitotic checkpoi 95.3 0.014 3.1E-07 73.9 4.2 45 578-622 257-301 (722)
106 KOG0995 Centromere-associated 95.3 9.5 0.00021 45.9 38.5 31 492-522 284-314 (581)
107 PF15619 Lebercilin: Ciliary p 95.3 2.4 5.3E-05 44.8 20.1 54 646-699 123-183 (194)
108 PF15066 CAGE1: Cancer-associa 95.1 8.9 0.00019 44.9 27.8 120 601-764 403-523 (527)
109 COG4942 Membrane-bound metallo 94.9 11 0.00023 44.4 28.0 51 496-551 60-110 (420)
110 COG1340 Uncharacterized archae 94.6 9.7 0.00021 42.6 35.0 45 612-656 30-77 (294)
111 PF09730 BicD: Microtubule-ass 94.6 18 0.00039 45.6 43.4 50 864-913 416-465 (717)
112 KOG0933 Structural maintenance 94.5 20 0.00044 45.8 41.9 11 88-98 32-42 (1174)
113 KOG0962 DNA repair protein RAD 94.4 25 0.00053 46.7 44.8 8 113-120 172-179 (1294)
114 COG1579 Zn-ribbon protein, pos 94.4 6.9 0.00015 42.6 21.1 95 577-692 88-183 (239)
115 PF05622 HOOK: HOOK protein; 94.3 0.013 2.7E-07 74.2 0.0 28 533-560 396-423 (713)
116 PF15070 GOLGA2L5: Putative go 94.0 22 0.00047 44.4 54.7 243 501-765 49-314 (617)
117 PF04849 HAP1_N: HAP1 N-termin 93.9 14 0.0003 41.7 27.2 59 642-704 214-272 (306)
118 PF05010 TACC: Transforming ac 93.9 11 0.00023 40.4 24.7 28 535-562 62-89 (207)
119 PF05557 MAD: Mitotic checkpoi 93.8 0.017 3.7E-07 73.2 0.0 14 752-765 265-278 (722)
120 KOG0999 Microtubule-associated 93.7 20 0.00043 42.8 44.5 21 378-398 7-27 (772)
121 PF00308 Bac_DnaA: Bacterial d 93.2 0.032 7E-07 60.2 0.9 49 46-98 3-51 (219)
122 PF05622 HOOK: HOOK protein; 93.2 0.025 5.5E-07 71.5 0.0 24 799-822 498-521 (713)
123 COG2805 PilT Tfp pilus assembl 93.1 0.048 1E-06 60.3 2.0 32 67-98 111-142 (353)
124 PF05701 WEMBL: Weak chloropla 93.0 28 0.00061 42.7 55.9 137 533-669 170-309 (522)
125 PF15070 GOLGA2L5: Putative go 93.0 31 0.00067 43.0 50.8 89 532-623 119-216 (617)
126 PRK09039 hypothetical protein; 92.9 13 0.00028 43.0 21.4 78 532-627 78-155 (343)
127 PRK09039 hypothetical protein; 92.7 13 0.00029 42.9 21.2 38 632-669 128-165 (343)
128 PRK06893 DNA replication initi 92.6 0.05 1.1E-06 59.1 1.4 46 46-98 11-56 (229)
129 PF05667 DUF812: Protein of un 92.4 36 0.00078 42.3 32.1 25 498-522 331-355 (594)
130 PF08317 Spc7: Spc7 kinetochor 92.2 7.5 0.00016 44.6 18.4 24 609-632 237-260 (325)
131 TIGR03007 pepcterm_ChnLen poly 92.1 24 0.00053 42.8 23.7 109 499-607 165-284 (498)
132 PF13851 GAS: Growth-arrest sp 92.0 19 0.00042 38.4 22.0 23 538-560 110-132 (201)
133 PF14988 DUF4515: Domain of un 92.0 20 0.00043 38.5 24.4 117 578-697 54-173 (206)
134 PF09787 Golgin_A5: Golgin sub 92.0 37 0.00081 41.5 32.1 86 607-699 293-381 (511)
135 COG0419 SbcC ATPase involved i 91.8 55 0.0012 43.1 54.8 18 81-98 25-42 (908)
136 KOG2129 Uncharacterized conser 91.7 30 0.00066 40.0 26.0 38 404-441 42-79 (552)
137 KOG0994 Extracellular matrix g 91.6 54 0.0012 42.7 32.2 35 663-697 1711-1745(1758)
138 COG4372 Uncharacterized protei 91.6 30 0.00065 39.7 27.7 15 907-921 402-416 (499)
139 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.5 16 0.00034 36.3 17.7 28 670-697 102-129 (132)
140 KOG4593 Mitotic checkpoint pro 91.5 44 0.00095 41.4 39.6 61 638-698 162-222 (716)
141 PF14988 DUF4515: Domain of un 91.5 23 0.00049 38.0 24.9 82 527-613 39-125 (206)
142 PRK04778 septation ring format 91.1 48 0.001 41.2 45.1 22 540-561 254-275 (569)
143 PF08317 Spc7: Spc7 kinetochor 91.1 33 0.00072 39.4 22.4 27 570-596 176-202 (325)
144 KOG0980 Actin-binding protein 91.1 54 0.0012 41.6 34.2 86 613-698 390-477 (980)
145 PRK06620 hypothetical protein; 90.8 0.089 1.9E-06 56.6 0.8 48 46-98 11-61 (214)
146 COG0419 SbcC ATPase involved i 90.8 67 0.0015 42.3 48.6 22 500-521 230-251 (908)
147 COG1340 Uncharacterized archae 90.7 33 0.00071 38.5 27.7 115 582-696 111-230 (294)
148 TIGR01843 type_I_hlyD type I s 90.1 45 0.00098 39.2 23.1 24 579-602 166-189 (423)
149 PF04111 APG6: Autophagy prote 89.7 5.1 0.00011 45.7 13.7 28 534-561 42-69 (314)
150 PF15294 Leu_zip: Leucine zipp 89.6 12 0.00026 41.6 15.8 43 650-692 231-276 (278)
151 TIGR03185 DNA_S_dndD DNA sulfu 89.2 72 0.0016 40.3 36.8 16 83-98 30-45 (650)
152 PRK09087 hypothetical protein; 89.2 0.16 3.4E-06 55.2 1.1 46 46-98 16-61 (226)
153 KOG0250 DNA repair protein RAD 89.1 85 0.0018 41.0 55.0 111 578-690 372-485 (1074)
154 KOG4809 Rab6 GTPase-interactin 89.1 59 0.0013 39.1 28.1 141 527-669 420-570 (654)
155 KOG1853 LIS1-interacting prote 89.0 32 0.00069 37.3 17.7 23 536-558 53-75 (333)
156 COG3883 Uncharacterized protei 88.9 42 0.00092 37.2 24.1 44 625-668 174-217 (265)
157 PF08826 DMPK_coil: DMPK coile 88.6 5.6 0.00012 34.0 9.7 49 844-895 12-60 (61)
158 KOG0804 Cytoplasmic Zn-finger 88.5 9.9 0.00021 44.4 14.6 39 193-237 120-159 (493)
159 TIGR03185 DNA_S_dndD DNA sulfu 88.4 81 0.0017 39.9 36.4 106 544-668 184-289 (650)
160 PF12718 Tropomyosin_1: Tropom 88.4 30 0.00065 34.9 18.4 79 501-596 20-98 (143)
161 PF08232 Striatin: Striatin fa 88.3 5.5 0.00012 39.7 11.1 119 846-964 4-122 (134)
162 PRK14086 dnaA chromosomal repl 88.3 0.16 3.4E-06 62.3 0.4 49 46-98 283-331 (617)
163 KOG0018 Structural maintenance 88.2 96 0.0021 40.4 32.6 61 606-666 224-287 (1141)
164 PF12325 TMF_TATA_bd: TATA ele 88.1 16 0.00035 35.7 13.9 89 535-631 30-118 (120)
165 PF04849 HAP1_N: HAP1 N-termin 87.9 53 0.0011 37.2 27.1 39 856-894 265-303 (306)
166 PF06160 EzrA: Septation ring 87.9 80 0.0017 39.1 38.0 328 499-927 98-446 (560)
167 PF10473 CENP-F_leu_zip: Leuci 87.7 33 0.00071 34.5 16.5 60 498-562 20-79 (140)
168 PF11559 ADIP: Afadin- and alp 87.6 16 0.00035 36.9 14.4 72 535-624 52-123 (151)
169 PF08614 ATG16: Autophagy prot 87.6 7.7 0.00017 41.1 12.6 28 534-561 73-100 (194)
170 PF15066 CAGE1: Cancer-associa 87.5 68 0.0015 37.9 27.4 74 608-688 452-525 (527)
171 COG2804 PulE Type II secretory 87.4 0.27 5.9E-06 58.4 1.6 30 70-99 247-276 (500)
172 KOG0804 Cytoplasmic Zn-finger 87.4 11 0.00023 44.1 14.0 28 528-555 375-402 (493)
173 PRK05642 DNA replication initi 87.3 0.29 6.2E-06 53.4 1.6 45 46-98 14-62 (234)
174 TIGR01005 eps_transp_fam exopo 87.2 32 0.00069 44.2 20.2 63 499-561 198-263 (754)
175 KOG1899 LAR transmembrane tyro 87.2 37 0.00079 41.3 18.4 108 585-698 181-299 (861)
176 PF13851 GAS: Growth-arrest sp 87.1 46 0.001 35.5 22.1 143 497-669 29-171 (201)
177 PRK14088 dnaA chromosomal repl 87.0 0.2 4.4E-06 59.7 0.3 49 45-98 99-147 (440)
178 PF12718 Tropomyosin_1: Tropom 86.9 37 0.0008 34.2 19.7 94 798-903 44-137 (143)
179 PRK08727 hypothetical protein; 86.8 0.27 5.8E-06 53.6 1.0 44 46-98 14-58 (233)
180 smart00787 Spc7 Spc7 kinetocho 86.3 35 0.00076 38.9 17.6 52 607-658 230-281 (312)
181 PF10168 Nup88: Nuclear pore c 86.2 43 0.00093 42.7 19.9 25 670-694 686-710 (717)
182 PF10481 CENP-F_N: Cenp-F N-te 86.2 8.8 0.00019 42.0 11.8 28 535-562 18-45 (307)
183 COG1474 CDC6 Cdc6-related prot 85.7 0.83 1.8E-05 53.2 4.4 27 72-98 32-59 (366)
184 PRK14087 dnaA chromosomal repl 85.7 0.83 1.8E-05 54.7 4.5 48 47-98 111-158 (450)
185 COG0593 DnaA ATPase involved i 85.3 0.35 7.6E-06 56.6 1.0 50 45-98 81-130 (408)
186 PRK00149 dnaA chromosomal repl 85.2 0.33 7.3E-06 58.1 0.9 49 46-98 117-165 (450)
187 KOG0978 E3 ubiquitin ligase in 85.2 1.1E+02 0.0025 38.4 50.9 76 678-765 428-503 (698)
188 PRK08084 DNA replication initi 85.1 0.4 8.7E-06 52.3 1.3 46 46-98 17-62 (235)
189 PF10146 zf-C4H2: Zinc finger- 85.0 27 0.00058 38.1 15.1 25 537-561 34-58 (230)
190 PF04851 ResIII: Type III rest 85.0 0.39 8.4E-06 49.1 1.1 30 69-98 12-42 (184)
191 PF00769 ERM: Ezrin/radixin/mo 84.8 42 0.00091 37.0 16.8 33 637-669 64-96 (246)
192 PRK11281 hypothetical protein; 84.1 1.7E+02 0.0036 39.3 32.4 52 862-913 287-338 (1113)
193 PRK12377 putative replication 84.0 0.41 8.9E-06 52.7 0.8 49 47-98 70-118 (248)
194 PF05483 SCP-1: Synaptonemal c 83.8 1.2E+02 0.0027 37.6 51.2 32 589-620 385-416 (786)
195 PF10146 zf-C4H2: Zinc finger- 83.8 30 0.00066 37.7 14.9 55 536-602 2-56 (230)
196 COG4372 Uncharacterized protei 83.7 92 0.002 36.0 34.5 59 292-362 7-67 (499)
197 TIGR03420 DnaA_homol_Hda DnaA 83.6 0.49 1.1E-05 50.7 1.2 46 46-98 10-55 (226)
198 PF05010 TACC: Transforming ac 83.2 71 0.0015 34.3 26.9 22 648-669 161-182 (207)
199 TIGR01420 pilT_fam pilus retra 83.1 0.9 1.9E-05 52.5 3.2 31 68-98 109-139 (343)
200 PF15254 CCDC14: Coiled-coil d 83.0 1.2E+02 0.0025 38.3 20.6 141 497-669 396-543 (861)
201 PRK06526 transposase; Provisio 83.0 0.48 1E-05 52.4 0.8 15 84-98 101-115 (254)
202 cd00009 AAA The AAA+ (ATPases 83.0 0.61 1.3E-05 45.1 1.5 29 70-98 8-36 (151)
203 COG5008 PilU Tfp pilus assembl 82.9 0.88 1.9E-05 49.7 2.7 43 69-111 115-159 (375)
204 PRK08116 hypothetical protein; 82.7 0.44 9.5E-06 53.1 0.4 50 46-98 80-131 (268)
205 COG5185 HEC1 Protein involved 82.6 1.1E+02 0.0024 36.2 34.0 107 570-680 256-362 (622)
206 TIGR01000 bacteriocin_acc bact 82.4 1.2E+02 0.0026 36.5 23.8 23 645-667 240-262 (457)
207 PRK00411 cdc6 cell division co 82.4 0.62 1.3E-05 54.6 1.5 20 79-98 53-72 (394)
208 TIGR00362 DnaA chromosomal rep 82.1 0.65 1.4E-05 54.9 1.5 49 46-98 105-153 (405)
209 KOG1899 LAR transmembrane tyro 81.9 1E+02 0.0023 37.7 19.1 46 605-668 170-215 (861)
210 PF14662 CCDC155: Coiled-coil 81.8 74 0.0016 33.6 23.7 31 531-561 98-128 (193)
211 PF04111 APG6: Autophagy prote 81.8 21 0.00045 40.8 13.4 25 537-561 11-35 (314)
212 TIGR00631 uvrb excinuclease AB 81.8 0.59 1.3E-05 58.5 1.0 93 48-146 2-98 (655)
213 PRK08903 DnaA regulatory inact 81.5 0.73 1.6E-05 49.7 1.6 47 46-98 13-59 (227)
214 TIGR02928 orc1/cdc6 family rep 81.4 0.61 1.3E-05 54.0 1.0 27 72-98 30-57 (365)
215 PF13245 AAA_19: Part of AAA d 81.3 0.81 1.8E-05 40.8 1.5 25 73-98 3-27 (76)
216 PF14992 TMCO5: TMCO5 family 81.2 98 0.0021 34.6 18.3 118 534-663 62-182 (280)
217 PF00270 DEAD: DEAD/DEAH box h 80.9 3 6.5E-05 42.1 5.7 25 72-98 7-31 (169)
218 PRK07952 DNA replication prote 80.6 0.63 1.4E-05 51.1 0.7 50 46-98 67-116 (244)
219 PRK10436 hypothetical protein; 80.6 0.76 1.7E-05 55.1 1.4 28 72-99 209-236 (462)
220 COG2433 Uncharacterized conser 80.3 60 0.0013 39.8 16.6 58 610-668 444-501 (652)
221 PF00437 T2SE: Type II/IV secr 80.3 0.9 1.9E-05 50.4 1.8 34 65-98 108-144 (270)
222 cd00046 DEXDc DEAD-like helica 80.1 0.73 1.6E-05 44.0 0.9 15 84-98 3-17 (144)
223 TIGR02538 type_IV_pilB type IV 80.1 0.77 1.7E-05 56.6 1.3 27 72-98 307-333 (564)
224 TIGR02533 type_II_gspE general 79.9 0.86 1.9E-05 55.1 1.6 28 72-99 233-260 (486)
225 KOG2129 Uncharacterized conser 79.3 1.3E+02 0.0029 35.0 28.0 26 895-920 331-356 (552)
226 PF13401 AAA_22: AAA domain; P 79.0 0.71 1.5E-05 44.7 0.4 18 81-98 4-21 (131)
227 PF10186 Atg14: UV radiation r 79.0 1.1E+02 0.0025 34.0 18.5 26 536-561 21-46 (302)
228 smart00787 Spc7 Spc7 kinetocho 78.9 1.3E+02 0.0028 34.5 20.3 27 570-596 171-197 (312)
229 cd01131 PilT Pilus retraction 78.8 0.8 1.7E-05 48.6 0.7 18 81-98 1-18 (198)
230 TIGR02525 plasmid_TraJ plasmid 78.8 1 2.3E-05 52.4 1.8 27 71-98 140-166 (372)
231 KOG4403 Cell surface glycoprot 78.6 1.4E+02 0.0031 34.9 18.7 41 722-762 334-375 (575)
232 PF09731 Mitofilin: Mitochondr 78.2 1.9E+02 0.004 36.0 24.5 14 137-150 24-37 (582)
233 TIGR02524 dot_icm_DotB Dot/Icm 77.9 1.1 2.5E-05 51.9 1.7 25 74-98 127-151 (358)
234 PF05483 SCP-1: Synaptonemal c 77.9 1.9E+02 0.0042 36.0 51.2 160 534-697 274-446 (786)
235 PF10212 TTKRSYEDQ: Predicted 77.6 1.8E+02 0.0038 35.4 27.3 113 287-425 212-329 (518)
236 PRK10884 SH3 domain-containing 77.6 33 0.00071 36.8 12.4 28 533-560 123-150 (206)
237 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.5 78 0.0017 31.3 19.1 38 726-763 94-131 (132)
238 PF03962 Mnd1: Mnd1 family; I 77.3 69 0.0015 33.9 14.6 29 533-561 67-95 (188)
239 PF15619 Lebercilin: Ciliary p 77.3 1E+02 0.0023 32.7 25.0 56 614-669 55-110 (194)
240 PF01935 DUF87: Domain of unkn 77.1 0.99 2.1E-05 48.7 0.9 17 82-98 24-40 (229)
241 smart00382 AAA ATPases associa 77.0 0.99 2.1E-05 43.0 0.7 17 82-98 3-19 (148)
242 PRK13729 conjugal transfer pil 76.8 24 0.00051 42.1 12.0 30 945-975 158-187 (475)
243 COG2433 Uncharacterized conser 76.7 39 0.00085 41.2 13.7 29 109-137 164-192 (652)
244 PF11932 DUF3450: Protein of u 76.6 74 0.0016 35.0 15.4 42 618-659 96-142 (251)
245 PRK10929 putative mechanosensi 76.6 2.8E+02 0.0061 37.3 34.5 53 862-914 267-319 (1109)
246 PF12846 AAA_10: AAA-like doma 75.6 1.1 2.4E-05 49.8 0.8 18 81-98 1-18 (304)
247 TIGR03017 EpsF chain length de 75.2 1.9E+02 0.004 34.5 21.5 94 500-593 176-276 (444)
248 PRK06835 DNA replication prote 75.1 1.4 3.1E-05 50.5 1.5 28 70-98 173-200 (329)
249 cd01129 PulE-GspE PulE/GspE Th 74.9 1.5 3.3E-05 48.7 1.6 27 72-98 71-97 (264)
250 PF09728 Taxilin: Myosin-like 74.9 1.6E+02 0.0035 33.6 32.7 56 617-672 203-268 (309)
251 PF13604 AAA_30: AAA domain; P 74.8 1.6 3.4E-05 46.2 1.7 28 71-98 8-35 (196)
252 KOG4787 Uncharacterized conser 74.7 2.1E+02 0.0045 34.9 20.7 195 536-765 340-543 (852)
253 PF02841 GBP_C: Guanylate-bind 74.5 26 0.00056 39.7 11.4 112 497-622 185-297 (297)
254 PRK10884 SH3 domain-containing 74.1 38 0.00082 36.3 11.7 19 577-595 92-110 (206)
255 PF05673 DUF815: Protein of un 74.0 2.5 5.3E-05 46.3 2.9 46 47-98 23-69 (249)
256 KOG0946 ER-Golgi vesicle-tethe 73.0 2.7E+02 0.0059 35.4 32.4 23 525-547 612-634 (970)
257 TIGR02680 conserved hypothetic 73.0 3.8E+02 0.0083 37.1 29.8 37 314-351 195-233 (1353)
258 PRK08181 transposase; Validate 72.8 1.4 3.1E-05 49.1 0.7 19 78-98 105-123 (269)
259 TIGR02782 TrbB_P P-type conjug 72.7 1.8 3.8E-05 49.1 1.4 28 70-98 122-149 (299)
260 PRK00106 hypothetical protein; 72.5 2.3E+02 0.0049 35.0 19.1 121 573-698 41-161 (535)
261 KOG0926 DEAH-box RNA helicase 72.4 2.5 5.4E-05 52.4 2.6 19 80-98 270-288 (1172)
262 PF00769 ERM: Ezrin/radixin/mo 72.4 1.6E+02 0.0035 32.5 17.6 24 646-669 87-110 (246)
263 PRK12422 chromosomal replicati 72.3 1.9 4.2E-05 51.6 1.7 50 45-98 105-158 (445)
264 KOG0980 Actin-binding protein 72.1 3E+02 0.0064 35.5 39.5 85 608-692 423-510 (980)
265 PF10168 Nup88: Nuclear pore c 72.1 2.9E+02 0.0063 35.4 22.6 18 169-186 293-310 (717)
266 PF00261 Tropomyosin: Tropomyo 71.8 1.6E+02 0.0034 32.2 31.1 64 606-669 89-162 (237)
267 PF08614 ATG16: Autophagy prot 71.7 43 0.00093 35.4 11.6 52 647-698 129-183 (194)
268 PF05911 DUF869: Plant protein 70.7 3.2E+02 0.0069 35.3 29.1 94 532-628 49-153 (769)
269 KOG1850 Myosin-like coiled-coi 70.6 1.9E+02 0.0042 32.7 41.9 117 813-958 253-371 (391)
270 PRK08939 primosomal protein Dn 70.6 1.4 3.1E-05 50.1 0.1 50 48-99 124-174 (306)
271 PF01637 Arch_ATPase: Archaeal 70.5 1.8 4E-05 45.9 0.9 29 70-98 9-37 (234)
272 PRK13894 conjugal transfer ATP 70.2 2.1 4.5E-05 49.0 1.3 27 71-98 139-165 (319)
273 PF00448 SRP54: SRP54-type pro 70.1 1.7 3.6E-05 46.2 0.5 16 83-98 3-18 (196)
274 PRK06921 hypothetical protein; 69.8 1.6 3.4E-05 48.6 0.2 18 81-98 117-134 (266)
275 PF15294 Leu_zip: Leucine zipp 69.8 88 0.0019 35.0 13.6 44 576-625 188-231 (278)
276 PF09755 DUF2046: Uncharacteri 69.8 2E+02 0.0044 32.6 38.4 83 610-698 78-160 (310)
277 PF01695 IstB_IS21: IstB-like 69.8 2.2 4.8E-05 44.5 1.3 30 69-98 35-64 (178)
278 KOG1265 Phospholipase C [Lipid 69.4 3.4E+02 0.0073 35.1 25.3 65 635-699 1076-1147(1189)
279 PF06309 Torsin: Torsin; Inte 68.7 3.3 7.3E-05 40.7 2.2 55 83-150 54-114 (127)
280 PF00004 AAA: ATPase family as 68.7 2.1 4.5E-05 41.2 0.8 15 84-98 1-15 (132)
281 PF13479 AAA_24: AAA domain 68.7 2 4.4E-05 46.0 0.8 19 81-99 3-21 (213)
282 KOG4593 Mitotic checkpoint pro 68.6 3.1E+02 0.0068 34.4 45.9 44 722-765 363-412 (716)
283 PF04912 Dynamitin: Dynamitin 68.6 2.1E+02 0.0045 33.8 17.5 87 606-692 292-387 (388)
284 PF13207 AAA_17: AAA domain; P 68.5 2 4.3E-05 41.1 0.6 16 83-98 1-16 (121)
285 smart00053 DYNc Dynamin, GTPas 68.2 6.6 0.00014 43.1 4.6 54 194-274 85-138 (240)
286 KOG0340 ATP-dependent RNA heli 68.1 13 0.00027 42.6 6.7 27 72-100 37-63 (442)
287 PF13191 AAA_16: AAA ATPase do 67.9 1.7 3.7E-05 44.6 0.0 22 77-98 20-41 (185)
288 cd01130 VirB11-like_ATPase Typ 67.5 2.7 5.8E-05 44.0 1.4 29 69-98 14-42 (186)
289 PRK13833 conjugal transfer pro 67.5 2.6 5.7E-05 48.2 1.4 27 71-98 135-161 (323)
290 COG1484 DnaC DNA replication p 67.5 2.5 5.4E-05 46.7 1.2 34 62-98 89-122 (254)
291 PHA02544 44 clamp loader, smal 67.4 2.4 5.3E-05 48.0 1.1 21 78-98 39-60 (316)
292 COG5185 HEC1 Protein involved 67.4 2.7E+02 0.0059 33.2 35.6 62 498-561 260-321 (622)
293 PTZ00112 origin recognition co 67.1 2.6 5.6E-05 53.6 1.3 28 71-98 769-798 (1164)
294 PF15397 DUF4618: Domain of un 66.6 2.1E+02 0.0047 31.7 26.3 69 492-561 71-143 (258)
295 PF07798 DUF1640: Protein of u 66.3 1.7E+02 0.0037 30.5 15.8 77 537-622 75-151 (177)
296 KOG0018 Structural maintenance 66.0 4.3E+02 0.0092 34.9 37.6 32 589-620 256-287 (1141)
297 PF04156 IncA: IncA protein; 65.8 1.8E+02 0.0038 30.4 15.8 16 639-654 135-150 (191)
298 PF09789 DUF2353: Uncharacteri 65.8 2.5E+02 0.0054 32.2 29.0 219 533-765 70-314 (319)
299 PF13086 AAA_11: AAA domain; P 65.6 2.8 6.1E-05 44.4 1.1 16 83-98 19-34 (236)
300 TIGR01843 type_I_hlyD type I s 65.3 2.8E+02 0.006 32.5 22.9 14 502-515 81-94 (423)
301 TIGR03015 pepcterm_ATPase puta 65.0 3.7 8E-05 45.2 2.0 21 78-98 40-60 (269)
302 KOG4807 F-actin binding protei 64.6 2.7E+02 0.006 32.3 34.3 31 402-432 288-318 (593)
303 COG4962 CpaF Flp pilus assembl 64.6 3.1 6.7E-05 47.5 1.2 28 70-98 163-190 (355)
304 PF02562 PhoH: PhoH-like prote 64.5 3.7 8E-05 43.9 1.7 25 72-98 12-36 (205)
305 KOG0989 Replication factor C, 64.4 3.4 7.4E-05 46.3 1.5 35 64-98 39-74 (346)
306 KOG0579 Ste20-like serine/thre 64.4 3.7E+02 0.008 33.7 44.2 48 496-544 802-850 (1187)
307 PRK12402 replication factor C 64.3 3.3 7.1E-05 47.2 1.4 21 78-98 33-53 (337)
308 PF08172 CASP_C: CASP C termin 64.3 84 0.0018 34.7 12.2 45 571-632 86-130 (248)
309 KOG0953 Mitochondrial RNA heli 64.3 5.1 0.00011 48.0 2.9 43 83-125 193-238 (700)
310 PRK00409 recombination and DNA 64.0 1.6E+02 0.0034 38.2 16.4 20 537-556 522-541 (782)
311 smart00487 DEXDc DEAD-like hel 63.5 4.6 9.9E-05 41.1 2.2 26 72-98 16-41 (201)
312 PF04156 IncA: IncA protein; 63.5 1.9E+02 0.0042 30.1 17.1 24 535-558 95-118 (191)
313 PF01580 FtsK_SpoIIIE: FtsK/Sp 63.4 2.9 6.2E-05 44.3 0.7 16 83-98 40-55 (205)
314 KOG4360 Uncharacterized coiled 63.3 3.1E+02 0.0066 33.2 16.7 60 606-669 223-282 (596)
315 PF00580 UvrD-helicase: UvrD/R 63.3 3.2 7E-05 46.3 1.1 22 77-98 9-30 (315)
316 PRK13851 type IV secretion sys 63.2 3 6.4E-05 48.2 0.8 27 71-98 153-179 (344)
317 KOG4403 Cell surface glycoprot 63.1 3.1E+02 0.0067 32.3 21.3 52 648-699 309-373 (575)
318 KOG2391 Vacuolar sorting prote 63.1 51 0.0011 37.5 10.1 65 596-685 212-279 (365)
319 PF05266 DUF724: Protein of un 62.9 1.8E+02 0.0038 30.9 13.8 58 603-671 125-182 (190)
320 PRK13900 type IV secretion sys 62.8 3.9 8.5E-05 47.0 1.7 27 71-98 151-177 (332)
321 PF06785 UPF0242: Uncharacteri 62.7 2.8E+02 0.0061 31.7 17.6 25 905-929 263-287 (401)
322 KOG2150 CCR4-NOT transcription 62.6 3.7E+02 0.008 33.0 18.9 168 612-902 4-176 (575)
323 TIGR02903 spore_lon_C ATP-depe 62.6 3.1 6.7E-05 51.9 0.9 43 47-98 150-192 (615)
324 PRK06547 hypothetical protein; 62.5 4.2 9.2E-05 42.2 1.7 30 69-98 3-32 (172)
325 PRK13764 ATPase; Provisional 62.3 3.8 8.2E-05 50.7 1.5 24 75-98 251-274 (602)
326 PRK00409 recombination and DNA 62.2 65 0.0014 41.6 12.5 11 738-748 713-723 (782)
327 COG3883 Uncharacterized protei 62.2 2.6E+02 0.0057 31.2 28.2 20 680-699 87-106 (265)
328 KOG0979 Structural maintenance 62.2 4.8E+02 0.01 34.2 28.8 22 535-556 202-223 (1072)
329 PF07106 TBPIP: Tat binding pr 62.0 79 0.0017 32.6 11.0 25 537-561 81-105 (169)
330 COG1223 Predicted ATPase (AAA+ 61.9 3.3 7.2E-05 45.3 0.8 18 81-98 151-168 (368)
331 KOG0163 Myosin class VI heavy 61.6 3.3E+02 0.0072 34.4 17.0 20 79-98 142-161 (1259)
332 cd07649 F-BAR_GAS7 The F-BAR ( 61.5 2.2E+02 0.0047 31.2 14.7 99 535-644 100-200 (233)
333 PF13671 AAA_33: AAA domain; P 61.4 3.4 7.4E-05 40.6 0.8 15 84-98 2-16 (143)
334 TIGR01000 bacteriocin_acc bact 61.4 3.6E+02 0.0077 32.5 21.1 27 534-560 171-197 (457)
335 PRK09183 transposase/IS protei 61.3 3.4 7.3E-05 45.9 0.7 16 83-98 104-119 (259)
336 KOG2991 Splicing regulator [RN 61.2 1.5E+02 0.0032 32.5 12.7 20 314-333 93-112 (330)
337 TIGR01069 mutS2 MutS2 family p 61.0 1.7E+02 0.0037 37.8 15.9 21 536-556 516-536 (771)
338 TIGR03499 FlhF flagellar biosy 60.3 3.5 7.6E-05 46.3 0.7 16 83-98 196-211 (282)
339 PRK12723 flagellar biosynthesi 60.2 3.7 8.1E-05 48.2 0.9 18 81-98 174-191 (388)
340 PF07724 AAA_2: AAA domain (Cd 60.2 3.5 7.7E-05 42.7 0.6 17 82-98 4-20 (171)
341 PF00910 RNA_helicase: RNA hel 59.9 3.3 7.1E-05 39.3 0.3 15 84-98 1-15 (107)
342 PF09731 Mitofilin: Mitochondr 59.8 4.3E+02 0.0093 32.9 22.3 18 680-697 378-395 (582)
343 PHA00729 NTP-binding motif con 59.8 4.8 0.0001 43.7 1.6 29 70-98 6-34 (226)
344 COG1219 ClpX ATP-dependent pro 59.2 4.3 9.2E-05 45.8 1.1 16 82-97 98-113 (408)
345 cd00268 DEADc DEAD-box helicas 58.9 5.8 0.00013 41.6 2.0 25 72-98 29-53 (203)
346 PRK03992 proteasome-activating 58.8 1.8 3.9E-05 50.9 -2.0 18 81-98 165-182 (389)
347 KOG4657 Uncharacterized conser 58.8 2.4E+02 0.0052 30.5 13.6 125 802-934 36-165 (246)
348 PF13238 AAA_18: AAA domain; P 58.5 4 8.7E-05 39.0 0.7 15 84-98 1-15 (129)
349 PF09787 Golgin_A5: Golgin sub 58.5 4.3E+02 0.0093 32.4 30.9 26 570-595 179-204 (511)
350 KOG3990 Uncharacterized conser 58.5 52 0.0011 35.8 8.8 44 645-692 250-293 (305)
351 PLN00020 ribulose bisphosphate 57.7 4.1 8.8E-05 47.2 0.6 51 47-98 111-165 (413)
352 KOG2373 Predicted mitochondria 57.6 4.7 0.0001 45.7 1.1 27 71-98 261-290 (514)
353 PF07728 AAA_5: AAA domain (dy 57.4 4.1 8.9E-05 40.1 0.6 15 84-98 2-16 (139)
354 PRK14722 flhF flagellar biosyn 57.4 4.4 9.6E-05 47.3 0.9 18 81-98 137-154 (374)
355 KOG0735 AAA+-type ATPase [Post 57.3 5.5 0.00012 49.2 1.6 49 79-127 699-761 (952)
356 PF06120 Phage_HK97_TLTM: Tail 57.2 3.4E+02 0.0074 30.9 20.6 106 788-894 66-175 (301)
357 PTZ00424 helicase 45; Provisio 57.2 5.6 0.00012 46.6 1.7 26 71-98 57-82 (401)
358 PF06156 DUF972: Protein of un 57.1 58 0.0012 31.2 8.1 51 385-440 7-57 (107)
359 cd01126 TraG_VirD4 The TraG/Tr 56.6 4.8 0.0001 47.2 1.0 15 84-98 2-16 (384)
360 TIGR01005 eps_transp_fam exopo 56.5 5.5E+02 0.012 33.1 26.7 63 577-639 236-311 (754)
361 TIGR03345 VI_ClpV1 type VI sec 55.8 16 0.00036 47.4 5.7 17 82-98 597-613 (852)
362 KOG4360 Uncharacterized coiled 55.6 4.5E+02 0.0098 31.8 21.0 73 623-703 197-270 (596)
363 TIGR02881 spore_V_K stage V sp 55.5 5.4 0.00012 44.1 1.1 18 81-98 42-59 (261)
364 PF12072 DUF3552: Domain of un 55.5 2.8E+02 0.0062 29.5 19.1 82 616-697 60-141 (201)
365 PF10473 CENP-F_leu_zip: Leuci 55.2 2.4E+02 0.0051 28.5 19.9 21 607-627 85-105 (140)
366 COG1201 Lhr Lhr-like helicases 55.0 13 0.00028 47.5 4.5 61 72-146 30-90 (814)
367 PRK11776 ATP-dependent RNA hel 54.9 6.9 0.00015 47.0 2.0 25 72-98 34-58 (460)
368 PRK07003 DNA polymerase III su 54.9 7.6 0.00016 49.0 2.3 18 81-98 38-55 (830)
369 PRK10536 hypothetical protein; 54.8 7 0.00015 43.2 1.8 18 81-98 74-91 (262)
370 smart00763 AAA_PrkA PrkA AAA d 54.7 10 0.00022 43.9 3.2 18 81-98 78-95 (361)
371 PF09744 Jnk-SapK_ap_N: JNK_SA 54.5 2.6E+02 0.0057 28.8 13.0 33 608-640 123-155 (158)
372 PF03215 Rad17: Rad17 cell cyc 54.2 6.6 0.00014 47.9 1.7 30 69-98 31-62 (519)
373 PTZ00454 26S protease regulato 53.6 2.3 5E-05 50.1 -2.3 49 48-97 142-195 (398)
374 PF02456 Adeno_IVa2: Adenoviru 53.4 5.4 0.00012 44.8 0.7 15 84-98 90-104 (369)
375 PRK12704 phosphodiesterase; Pr 53.0 5.2E+02 0.011 31.8 24.6 15 1002-1016 391-405 (520)
376 COG1382 GimC Prefoldin, chaper 52.9 2.3E+02 0.005 27.7 12.2 88 531-621 16-110 (119)
377 PF06120 Phage_HK97_TLTM: Tail 52.8 4E+02 0.0087 30.4 19.9 127 500-630 46-176 (301)
378 PF13514 AAA_27: AAA domain 52.7 7.5E+02 0.016 33.5 60.5 57 381-439 152-208 (1111)
379 PRK11192 ATP-dependent RNA hel 52.5 7.8 0.00017 46.1 1.9 25 72-98 31-55 (434)
380 TIGR02231 conserved hypothetic 52.3 1.2E+02 0.0025 37.4 12.0 27 797-823 72-98 (525)
381 PF06414 Zeta_toxin: Zeta toxi 52.1 6.1 0.00013 41.8 0.8 18 81-98 15-32 (199)
382 KOG1853 LIS1-interacting prote 52.0 3.6E+02 0.0078 29.6 21.9 18 675-692 107-124 (333)
383 COG1419 FlhF Flagellar GTP-bin 51.7 7.1 0.00015 45.6 1.3 18 81-98 203-220 (407)
384 PF09304 Cortex-I_coil: Cortex 51.7 2.3E+02 0.0049 27.2 14.8 7 578-584 16-22 (107)
385 KOG3859 Septins (P-loop GTPase 51.6 12 0.00026 41.4 2.9 46 65-110 25-79 (406)
386 PF12795 MscS_porin: Mechanose 51.6 3.6E+02 0.0077 29.5 23.1 164 534-700 37-212 (240)
387 PF07106 TBPIP: Tat binding pr 51.5 2.3E+02 0.005 29.1 12.4 57 497-563 81-137 (169)
388 KOG1103 Predicted coiled-coil 51.4 4.2E+02 0.0092 30.3 17.3 13 753-765 268-280 (561)
389 KOG1003 Actin filament-coating 51.3 3.3E+02 0.0071 28.9 23.0 36 405-440 4-39 (205)
390 PF13555 AAA_29: P-loop contai 51.2 6.3 0.00014 33.9 0.6 15 84-98 26-40 (62)
391 PF15397 DUF4618: Domain of un 51.0 3.9E+02 0.0084 29.7 27.0 85 537-625 8-97 (258)
392 COG2256 MGS1 ATPase related to 50.9 7.7 0.00017 45.2 1.4 43 49-97 22-64 (436)
393 KOG2543 Origin recognition com 50.8 6.4 0.00014 45.4 0.8 38 83-143 32-69 (438)
394 PF15456 Uds1: Up-regulated Du 50.7 1.7E+02 0.0037 28.8 10.5 49 859-907 73-121 (124)
395 PRK04837 ATP-dependent RNA hel 50.6 8.4 0.00018 45.7 1.8 25 72-98 38-62 (423)
396 PF14992 TMCO5: TMCO5 family 50.3 4.1E+02 0.009 29.8 17.0 55 836-890 106-160 (280)
397 COG1136 SalX ABC-type antimicr 50.3 6.7 0.00015 42.5 0.8 26 84-110 34-61 (226)
398 PRK12704 phosphodiesterase; Pr 50.3 5.7E+02 0.012 31.5 22.1 13 624-636 155-167 (520)
399 PF02534 T4SS-DNA_transf: Type 50.2 9.6 0.00021 45.9 2.2 17 82-98 45-61 (469)
400 PF15254 CCDC14: Coiled-coil d 50.1 6.6E+02 0.014 32.1 23.4 24 646-669 534-557 (861)
401 PF11559 ADIP: Afadin- and alp 49.7 2.9E+02 0.0062 27.8 16.2 69 601-669 79-147 (151)
402 KOG4657 Uncharacterized conser 49.7 3.7E+02 0.0081 29.1 16.1 16 670-685 130-145 (246)
403 KOG2751 Beclin-like protein [S 49.5 5.2E+02 0.011 30.7 17.1 89 533-634 141-229 (447)
404 PF12775 AAA_7: P-loop contain 49.2 8.3 0.00018 43.1 1.3 27 71-98 24-50 (272)
405 KOG0249 LAR-interacting protei 49.1 6.6E+02 0.014 31.8 24.9 23 675-697 169-191 (916)
406 CHL00081 chlI Mg-protoporyphyr 49.0 4.4 9.6E-05 46.9 -0.9 44 46-98 12-55 (350)
407 KOG0727 26S proteasome regulat 48.9 6.9 0.00015 42.6 0.6 79 48-127 152-249 (408)
408 PRK11448 hsdR type I restricti 48.9 8 0.00017 51.5 1.3 40 67-116 420-459 (1123)
409 PF10226 DUF2216: Uncharacteri 48.7 2E+02 0.0044 30.2 11.0 109 392-556 18-136 (195)
410 PF10498 IFT57: Intra-flagella 48.7 3.9E+02 0.0085 31.3 14.8 20 540-559 239-258 (359)
411 COG1125 OpuBA ABC-type proline 48.6 7.5 0.00016 42.8 0.8 12 87-98 33-44 (309)
412 PF14662 CCDC155: Coiled-coil 48.5 3.6E+02 0.0078 28.6 26.5 32 729-760 65-97 (193)
413 PF09738 DUF2051: Double stran 48.5 2.7E+02 0.0058 31.8 13.0 54 577-633 83-136 (302)
414 PRK10590 ATP-dependent RNA hel 48.3 10 0.00022 45.5 2.1 25 72-98 31-55 (456)
415 TIGR02902 spore_lonB ATP-depen 48.2 7.5 0.00016 47.7 0.9 44 46-98 60-103 (531)
416 PF14282 FlxA: FlxA-like prote 48.2 76 0.0017 30.3 7.5 20 535-554 19-38 (106)
417 TIGR01618 phage_P_loop phage n 48.2 7.5 0.00016 42.1 0.7 18 81-98 12-29 (220)
418 PF08581 Tup_N: Tup N-terminal 48.1 2.1E+02 0.0046 25.9 10.2 16 603-618 58-73 (79)
419 cd01127 TrwB Bacterial conjuga 48.0 7.5 0.00016 46.1 0.8 18 81-98 42-59 (410)
420 PRK11331 5-methylcytosine-spec 47.9 8.2 0.00018 46.0 1.1 30 331-364 320-349 (459)
421 TIGR00348 hsdR type I site-spe 47.9 9.9 0.00021 48.0 1.9 30 69-99 247-281 (667)
422 TIGR01242 26Sp45 26S proteasom 47.9 7.3 0.00016 45.4 0.6 18 81-98 156-173 (364)
423 PF05262 Borrelia_P83: Borreli 47.9 6E+02 0.013 31.0 16.7 13 335-347 49-61 (489)
424 PRK00440 rfc replication facto 47.8 9 0.00019 43.2 1.4 21 78-98 35-55 (319)
425 KOG0239 Kinesin (KAR3 subfamil 47.7 5.8E+02 0.012 32.5 17.0 18 578-595 241-258 (670)
426 TIGR03238 dnd_assoc_3 dnd syst 47.4 24 0.00051 42.5 4.7 27 74-100 19-51 (504)
427 TIGR02680 conserved hypothetic 47.4 9.7E+02 0.021 33.3 43.5 15 84-98 27-41 (1353)
428 TIGR02338 gimC_beta prefoldin, 47.2 2.6E+02 0.0057 26.7 12.0 28 795-822 9-36 (110)
429 PRK14961 DNA polymerase III su 47.1 6.6 0.00014 45.7 0.2 29 70-98 26-55 (363)
430 cd01120 RecA-like_NTPases RecA 47.0 7.8 0.00017 38.4 0.6 15 84-98 2-16 (165)
431 PF07798 DUF1640: Protein of u 47.0 3.5E+02 0.0077 28.1 15.8 12 577-588 57-68 (177)
432 KOG4807 F-actin binding protei 46.9 5.3E+02 0.011 30.1 22.8 72 571-642 414-489 (593)
433 PLN03025 replication factor C 46.9 9.7 0.00021 43.5 1.5 20 79-98 32-51 (319)
434 PRK09376 rho transcription ter 46.8 31 0.00067 40.6 5.5 52 78-150 168-219 (416)
435 PRK15424 propionate catabolism 46.7 23 0.00051 43.5 4.7 33 180-212 321-353 (538)
436 PRK04328 hypothetical protein; 46.6 12 0.00026 41.2 2.0 27 71-97 10-39 (249)
437 PF07111 HCR: Alpha helical co 46.3 7.2E+02 0.016 31.5 51.2 62 495-556 201-263 (739)
438 PF05970 PIF1: PIF1-like helic 46.2 7.5 0.00016 45.3 0.4 34 61-98 6-39 (364)
439 TIGR03319 YmdA_YtgF conserved 46.0 6.6E+02 0.014 30.9 24.8 38 984-1029 391-428 (514)
440 PF13476 AAA_23: AAA domain; P 45.7 8.1 0.00017 40.0 0.5 17 82-98 20-36 (202)
441 PF05700 BCAS2: Breast carcino 45.6 1.7E+02 0.0036 31.8 10.6 30 599-628 186-215 (221)
442 PRK04195 replication factor C 45.6 11 0.00024 45.7 1.8 30 69-98 26-56 (482)
443 TIGR02788 VirB11 P-type DNA tr 45.4 11 0.00024 42.9 1.6 28 70-98 134-161 (308)
444 TIGR01010 BexC_CtrB_KpsE polys 45.3 5.3E+02 0.011 29.9 15.5 85 500-592 175-263 (362)
445 TIGR03819 heli_sec_ATPase heli 45.3 11 0.00023 43.7 1.5 29 69-98 167-195 (340)
446 KOG0249 LAR-interacting protei 45.3 7.5E+02 0.016 31.4 21.9 59 501-560 176-234 (916)
447 PF05729 NACHT: NACHT domain 45.3 9.1 0.0002 38.2 0.8 16 83-98 2-17 (166)
448 PF12761 End3: Actin cytoskele 45.1 1.5E+02 0.0034 31.4 9.7 48 570-627 131-178 (195)
449 KOG0288 WD40 repeat protein Ti 45.1 3.4E+02 0.0075 31.9 13.1 116 529-645 7-126 (459)
450 PRK10803 tol-pal system protei 45.1 1.1E+02 0.0024 34.0 9.4 70 788-900 32-101 (263)
451 TIGR02237 recomb_radB DNA repa 45.0 10 0.00022 40.2 1.2 25 74-98 2-29 (209)
452 KOG0344 ATP-dependent RNA heli 44.7 26 0.00057 42.5 4.6 19 80-98 172-190 (593)
453 PRK05703 flhF flagellar biosyn 44.6 9.2 0.0002 45.6 0.8 17 82-98 222-238 (424)
454 PF06048 DUF927: Domain of unk 44.5 9.6 0.00021 42.9 0.9 28 70-98 183-210 (286)
455 PF04012 PspA_IM30: PspA/IM30 44.5 4.3E+02 0.0092 28.3 21.3 184 384-627 28-221 (221)
456 cd02021 GntK Gluconate kinase 44.2 9.4 0.0002 38.0 0.7 15 84-98 2-16 (150)
457 TIGR00614 recQ_fam ATP-depende 44.0 14 0.0003 44.7 2.2 26 71-98 18-43 (470)
458 cd03274 ABC_SMC4_euk Eukaryoti 43.9 10 0.00022 40.6 1.0 15 84-98 28-42 (212)
459 KOG2264 Exostosin EXT1L [Signa 43.8 2.1E+02 0.0046 34.7 11.5 64 844-907 84-147 (907)
460 PF06785 UPF0242: Uncharacteri 43.8 5.5E+02 0.012 29.4 21.1 51 653-703 132-182 (401)
461 PRK13342 recombination factor 43.8 13 0.00028 44.1 1.9 27 72-98 27-53 (413)
462 cd01123 Rad51_DMC1_radA Rad51_ 43.7 13 0.00028 40.1 1.7 29 70-98 5-36 (235)
463 PF00063 Myosin_head: Myosin h 43.6 8.6 0.00019 48.8 0.4 36 63-98 67-102 (689)
464 TIGR03794 NHPM_micro_HlyD NHPM 43.5 6.3E+02 0.014 30.0 19.2 10 939-948 389-398 (421)
465 smart00502 BBC B-Box C-termina 43.5 2.9E+02 0.0063 26.1 14.6 44 653-696 51-95 (127)
466 PF13173 AAA_14: AAA domain 43.5 10 0.00022 36.9 0.9 17 82-98 3-19 (128)
467 COG0606 Predicted ATPase with 43.2 10 0.00022 45.1 0.9 25 84-114 201-225 (490)
468 PRK15455 PrkA family serine pr 42.7 25 0.00054 43.3 4.0 67 50-121 75-163 (644)
469 PF12774 AAA_6: Hydrolytic ATP 42.5 14 0.0003 40.4 1.7 44 81-124 32-83 (231)
470 PRK06995 flhF flagellar biosyn 42.5 9.9 0.00022 45.9 0.7 17 82-98 257-273 (484)
471 PHA02244 ATPase-like protein 42.4 13 0.00028 43.3 1.6 26 71-98 111-136 (383)
472 KOG0979 Structural maintenance 42.4 9.5E+02 0.021 31.7 30.3 14 85-98 46-59 (1072)
473 COG1126 GlnQ ABC-type polar am 42.3 10 0.00022 40.8 0.6 14 85-98 32-45 (240)
474 PRK06067 flagellar accessory p 42.3 15 0.00034 39.7 2.1 29 70-98 11-42 (234)
475 TIGR01359 UMP_CMP_kin_fam UMP- 42.2 11 0.00024 38.9 0.9 15 84-98 2-16 (183)
476 PF13779 DUF4175: Domain of un 42.1 5E+02 0.011 33.9 15.5 46 838-884 553-598 (820)
477 PRK07261 topology modulation p 42.1 11 0.00024 38.9 0.9 15 84-98 3-17 (171)
478 PRK11634 ATP-dependent RNA hel 42.1 13 0.00028 46.6 1.7 25 72-98 36-60 (629)
479 KOG4572 Predicted DNA-binding 42.0 8.7E+02 0.019 31.2 16.5 167 496-677 923-1098(1424)
480 PRK00131 aroK shikimate kinase 42.0 11 0.00024 38.2 0.8 17 82-98 5-21 (175)
481 COG3074 Uncharacterized protei 41.8 1.9E+02 0.0042 25.4 7.9 51 381-436 20-70 (79)
482 TIGR03158 cas3_cyano CRISPR-as 41.8 15 0.00033 42.7 2.0 27 72-98 5-31 (357)
483 PRK13822 conjugal transfer cou 41.7 20 0.00044 45.0 3.2 18 81-98 224-241 (641)
484 PF10236 DAP3: Mitochondrial r 41.6 12 0.00026 42.6 1.2 23 76-98 18-40 (309)
485 PF13815 Dzip-like_N: Iguana/D 41.6 1.3E+02 0.0029 29.1 8.2 54 844-897 64-117 (118)
486 PRK00080 ruvB Holliday junctio 41.6 11 0.00025 43.0 1.0 17 82-98 52-68 (328)
487 KOG1103 Predicted coiled-coil 41.5 6E+02 0.013 29.1 21.6 33 666-698 245-277 (561)
488 PRK13897 type IV secretion sys 41.3 23 0.00049 44.2 3.5 17 82-98 159-175 (606)
489 PF10211 Ax_dynein_light: Axon 41.2 4.2E+02 0.0091 28.0 12.5 97 537-633 86-187 (189)
490 PRK13729 conjugal transfer pil 41.1 1.9E+02 0.004 34.9 10.7 61 847-908 57-117 (475)
491 KOG1962 B-cell receptor-associ 41.1 3.6E+02 0.0078 29.2 11.8 99 578-681 114-212 (216)
492 KOG2077 JNK/SAPK-associated pr 41.0 3.3E+02 0.0073 33.2 12.5 53 568-623 319-371 (832)
493 PRK08118 topology modulation p 41.0 12 0.00026 38.6 0.9 14 84-97 4-17 (167)
494 PF00735 Septin: Septin; Inte 40.8 7.8 0.00017 43.6 -0.5 21 78-98 1-21 (281)
495 cd00464 SK Shikimate kinase (S 40.8 12 0.00027 37.1 1.0 16 83-98 1-16 (154)
496 KOG0163 Myosin class VI heavy 40.6 8.9E+02 0.019 30.9 18.9 43 318-360 387-430 (1259)
497 PF06745 KaiC: KaiC; InterPro 40.6 17 0.00036 39.1 2.0 28 71-98 6-36 (226)
498 COG1222 RPT1 ATP-dependent 26S 40.5 12 0.00026 43.0 0.9 12 84-95 188-199 (406)
499 TIGR00635 ruvB Holliday juncti 40.3 13 0.00027 42.0 1.0 21 78-98 27-47 (305)
500 TIGR01313 therm_gnt_kin carboh 40.3 11 0.00023 38.3 0.4 14 84-97 1-14 (163)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-124 Score=1105.15 Aligned_cols=822 Identities=42% Similarity=0.566 Sum_probs=716.8
Q ss_pred eCCCCCchhccCCceEEEEeCCCceeeecC-eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCc
Q 001664 16 VRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK 94 (1035)
Q Consensus 16 vRP~~~~E~~~~~~~~v~v~~~~~~v~~~~-~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGK 94 (1035)
|||+...|..+||..|+.+.+++|+|.++. .+|+||+||++.. .|..+|+.||.|+++.+|.|||+||+|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~~-~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDLE-SQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCch-HHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 699999999999999999999999999976 6899999998764 58999999999999999999999999999999999
Q ss_pred cccccCCCCCCCcc-cchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCcccccccccCCCCCccccCCCC
Q 001664 95 TYTMGTGLREGFQT-GLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRP 173 (1035)
Q Consensus 95 TyTm~G~~~~~~~~-Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1035)
|||||+++...... |||||++.+||..|..... ..|.|.|||+|||++.|+|||.|.. ...
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~-----------------~~~ 141 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR-----------------LKA 141 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh-----------------hhh
Confidence 99999986654444 9999999999999998654 7899999999999999999998543 123
Q ss_pred CceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccCCCCCCCCCCC
Q 001664 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDED 253 (1035)
Q Consensus 174 ~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~~~~~~~~~~~~~~~ 253 (1035)
++.+++ +.|+|++.|+++++|.+..+++.+|..|...|++++|+||.+|||||+||||++++..+...
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~----------- 209 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK----------- 209 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence 478888 88999999999999999999999999999999999999999999999999999998655322
Q ss_pred CCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCCCChhhhhhhccCCC
Q 001664 254 MDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGG 333 (1035)
Q Consensus 254 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkLTrLLqdsLgG 333 (1035)
...++++|||||||||||.++|+++|+|++||++||.||++|||||+||++.++ ++|||||||||||||||+|||
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG 284 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG 284 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence 225789999999999999999999999999999999999999999999999765 679999999999999999999
Q ss_pred CceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHH
Q 001664 334 NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGR 413 (1035)
Q Consensus 334 ns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN~d~~~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~er 413 (1035)
|+.|+||+||||++.|++||++||+||+||++|+|||++|.|+...+|..|+.+|+.|+.+|+...++...+++..|..+
T Consensus 285 ns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e 364 (913)
T KOG0244|consen 285 NSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFE 364 (913)
T ss_pred CcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988766667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCC--------------------ccccccchhccccccccccchhhh
Q 001664 414 IAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGP--------------------VSFVKSDGLKRGFQSIDSSDYQMD 473 (1035)
Q Consensus 414 i~~Le~e~~~L~~eL~e~r~r~~~~E~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~l~ 473 (1035)
+..++..++.+..++.+.+..+.....+...+.... ....+...|.+.++.+.....++.
T Consensus 365 ~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~ 444 (913)
T KOG0244|consen 365 NVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIG 444 (913)
T ss_pred hhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccccccc
Confidence 999999999999999998887754332221111000 000011223333333332211111
Q ss_pred hhhh-cCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 474 EAVS-DGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQE 550 (1035)
Q Consensus 474 e~~~-~~~~~~~eee~~e~e~~~~q~~l~~El~eL~kqLe~kE~~~k~~~~--~d~~~~k~~ye~kl~eLEeei~~LqkE 550 (1035)
.... .+++.........++|...+.+|..++.+++++|++||+.+++... .....++++|+.++..|+.++..++.|
T Consensus 445 ~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E 524 (913)
T KOG0244|consen 445 MNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE 524 (913)
T ss_pred ccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc
Confidence 1111 0111112223456788899999999999999999999999998874 346678999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 551 RDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (1035)
Q Consensus 551 rd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~k 630 (1035)
++.|..++.... ....++.+.|.++|+.||.++..|++++.+|..|.+.+.+.+.....|..||..||.++|+|++
T Consensus 525 ~~~l~~el~~~~----~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~ 600 (913)
T KOG0244|consen 525 RSRLRNELNVFN----RLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR 600 (913)
T ss_pred cHHHHHHHHhhh----HHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999873 2788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 001664 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNS 710 (1035)
Q Consensus 631 kmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~~~ 710 (1035)
+|++|+++|+.|++..+||+.||+++.|+.++++.+++..+.+|..||+|+++|++++++||++++..|+......-..
T Consensus 601 ~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~~~~- 679 (913)
T KOG0244|consen 601 VMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQVTL- 679 (913)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987663211100
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCCCCCCCcccccCC
Q 001664 711 TGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLS 790 (1035)
Q Consensus 711 ~~~~~~~~~~~~~~~~~Wl~~ElE~~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~ 790 (1035)
.+ ++ ........|+.+|+++++.+.+++++|+++++.|+.+..++..++...
T Consensus 680 ~~-~~----~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~----------------------- 731 (913)
T KOG0244|consen 680 GD-NG----ASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG----------------------- 731 (913)
T ss_pred hh-cC----chhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 01 11 345678999999999999999999999999999999999999998721
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001664 791 PNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWE------ 864 (1035)
Q Consensus 791 ~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~------ 864 (1035)
...|.+|+.+++..+++|.+|++++..++++.+.+. +|+++.++.+||+.+.++|+..+..++....
T Consensus 732 ----~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~---~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~r 804 (913)
T KOG0244|consen 732 ----KKLLGSLEPVMELTSDQISSMQDLIITASKDERIKM---RWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGSR 804 (913)
T ss_pred ----HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHHH---HHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 567899999999999999999999999988877655 9999999999999999999999999998884
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001664 865 -KDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (1035)
Q Consensus 865 -~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 913 (1035)
....+.++.+++.+....++..+.+......+...+.+.+..++++...
T Consensus 805 e~~~~~~~l~~kl~~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~~~~ 854 (913)
T KOG0244|consen 805 EKGIKKWDLTQKLLDEQVNLRKDEVQALGVVPEHPVLLSGCKGGILKVWQ 854 (913)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5566677777777777778889999999999999999999999988776
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-89 Score=821.36 Aligned_cols=398 Identities=40% Similarity=0.627 Sum_probs=332.6
Q ss_pred CCCceEEEEEeCCCCCchhccCCceEEEEeCCCceeeec--------CeeEEeceEeCCCCCCCcccccccchhhHHHhh
Q 001664 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (1035)
Q Consensus 6 ~~~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~--------~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l 77 (1035)
...+|+|+|||||++..|....+..+|.+.+....|.+. .++|+||+||||.+. |.+||+.+|.|+|..|+
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~-Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQ-QEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchh-HHHHHHHHHHHHHHHHh
Confidence 456999999999999999988888888777654434431 468999999999864 99999999999999999
Q ss_pred cCCCccEEeeccCCCCccccccCCCC-----CCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCc
Q 001664 78 QGYNATVLAYGQTGSGKTYTMGTGLR-----EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (1035)
Q Consensus 78 ~G~n~tI~aYGqTGSGKTyTm~G~~~-----~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~ 152 (1035)
.|||||||||||||+||||||.|+.. .+...|||||++.+||+.++.. ..+|+|.|||+|+|||+|+|||+|.
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCc
Confidence 99999999999999999999998644 4567899999999999999884 4799999999999999999999986
Q ss_pred ccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEE
Q 001664 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (1035)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI 232 (1035)
.... ....+.+.+++. +..|||+|.|+.+++|+++.|++.+|.+|...|.|++|.||.+|||||+||+|
T Consensus 204 ~~~~--------~~~~~k~~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsI 272 (1041)
T KOG0243|consen 204 DTSD--------KKLRIKDDSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSI 272 (1041)
T ss_pred cccc--------cccccccCCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEE
Confidence 5321 111122233333 67899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCC
Q 001664 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (1035)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~ 312 (1035)
+|.-... ...+.+-..+|||+||||||||...++|+.+.|.+|++.||+||++||+||+||.+..
T Consensus 273 tvhike~-----------t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s---- 337 (1041)
T KOG0243|consen 273 TVHIKEN-----------TPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS---- 337 (1041)
T ss_pred EEEEecC-----------CCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC----
Confidence 9976421 1113355778999999999999999999999999999999999999999999999864
Q ss_pred CCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccc-hHHHHHHHHHHHHH
Q 001664 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI-SSDMQKLRQQLKYL 391 (1035)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN~d~~-~~ei~~Lr~eI~~L 391 (1035)
+|||||+|||||||||||||.++|+|||||||+..+++||++||.||.||++|+|||.+|.-.. ...|..|-.+|++|
T Consensus 338 -~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerL 416 (1041)
T KOG0243|consen 338 -GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERL 416 (1041)
T ss_pred -CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999997543 45678899999999
Q ss_pred HHHHhhhh--CCC--ChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 392 QAELCARA--GGA--PSD-------EVQVLKGRIAWLEATNEDLCQELHEYRS 433 (1035)
Q Consensus 392 q~eL~~~~--~~~--~~~-------e~q~L~eri~~Le~e~~~L~~eL~e~r~ 433 (1035)
+.+|.+.. .|+ +.+ +.+.+.++|..++.+.+.+..+|....+
T Consensus 417 K~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e 469 (1041)
T KOG0243|consen 417 KRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTE 469 (1041)
T ss_pred HHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996542 332 222 3344444455555555444444444433
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-92 Score=814.26 Aligned_cols=357 Identities=46% Similarity=0.687 Sum_probs=329.6
Q ss_pred CCCceEEEEEeCCCCCchhccCCceEEEEeCCCceeee---------cCeeEEeceEeCCCCCCCcccccccchhhHHHh
Q 001664 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (1035)
Q Consensus 6 ~~~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~---------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~ 76 (1035)
..++|+|+|||||+...+...++..++.+.+...++.+ .+++|+||+||+++++ |++||..++.|+|++|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~st-Q~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDST-QDDVYQETVAPLVESV 81 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCC-HHHHHHHHhHHHHHHH
Confidence 46799999999999999999999888888776666655 2468999999998765 8999999999999999
Q ss_pred hcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCccccc
Q 001664 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (1035)
Q Consensus 77 l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~ 156 (1035)
|+||||||||||||||||||||.|+ ++...|||||+|.+||..|+.......|.|+|||+|||||.|+|||++.+
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~--- 156 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN--- 156 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---
Confidence 9999999999999999999999998 47889999999999999999987677899999999999999999998754
Q ss_pred ccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEe
Q 001664 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (1035)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q 236 (1035)
.+.+.|++++..||||.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||||+|++
T Consensus 157 ---------------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~ 221 (574)
T KOG4280|consen 157 ---------------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIES 221 (574)
T ss_pred ---------------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEe
Confidence 14789999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcc
Q 001664 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (1035)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~v 316 (1035)
..+. .+.......|+|||||||||||..+|++.|.|++|+.+||+||++||+||++|+++++ .||
T Consensus 222 ~~~~-----------~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~----~HI 286 (574)
T KOG4280|consen 222 SEKS-----------DGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK----THI 286 (574)
T ss_pred eccc-----------CCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc----CCC
Confidence 3221 1123456789999999999999999999999999999999999999999999999865 399
Q ss_pred cCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHh
Q 001664 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELC 396 (1035)
Q Consensus 317 PyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN~d~~~~ei~~Lr~eI~~Lq~eL~ 396 (1035)
||||||||+||||||||||+|+|||||||++++++||++||+||+||+.|+|||++|.|+....+..|+.+|+.|+.++.
T Consensus 287 PYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 287 PYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELD 366 (574)
T ss_pred CcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hh
Q 001664 397 AR 398 (1035)
Q Consensus 397 ~~ 398 (1035)
..
T Consensus 367 ~~ 368 (574)
T KOG4280|consen 367 PG 368 (574)
T ss_pred cc
Confidence 64
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-90 Score=810.70 Aligned_cols=389 Identities=40% Similarity=0.600 Sum_probs=336.5
Q ss_pred CCceEEEEEeCCCCCchhccCCceEEEEeCCCceeeec-----CeeEEeceEeCCCCC------CCcccccccchhhHHH
Q 001664 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-----THSFTFDHVYGNGGS------PSSAMFGECVAPLVDG 75 (1035)
Q Consensus 7 ~~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~-----~~~F~FD~VF~~~~s------~q~~vy~~~v~plV~~ 75 (1035)
..+|+|+|||||++.+|....|+.+|.+..+..++... ...|+||++|++.++ +|..||+....|+++.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 46899999999999999998887666665555554432 256999999986543 4788999999999999
Q ss_pred hhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhc-ccceEEEEeehhhhhhhHHhhhcCCccc
Q 001664 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (1035)
Q Consensus 76 ~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~V~vS~~EIYnE~v~DLL~~~~~ 154 (1035)
+|+|||+||||||||||||||||.|- .++.++|||||++++||.+|.... .+..|.|.|||+|||||.|+|||+.+.
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~-~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~- 160 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGF-QEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK- 160 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeecc-CCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC-
Confidence 99999999999999999999999884 466889999999999999998753 457899999999999999999998321
Q ss_pred ccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEE
Q 001664 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (1035)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v 234 (1035)
.+++|.+||+|-.|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||||++
T Consensus 161 ----------------~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvf 224 (1221)
T KOG0245|consen 161 ----------------SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVF 224 (1221)
T ss_pred ----------------CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEE
Confidence 2468999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhcc--CCC
Q 001664 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK--RRE 312 (1035)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~--~~~ 312 (1035)
.|..... +........|+|+|||||||||+..+|+.|+|+|||.+||+||++||.||+||++.++ .++
T Consensus 225 tQk~~~~----------~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~k 294 (1221)
T KOG0245|consen 225 TQKKHDQ----------DTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKK 294 (1221)
T ss_pred Eeeeccc----------cCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCC
Confidence 9964321 1112356789999999999999999999999999999999999999999999998664 334
Q ss_pred CCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHH
Q 001664 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQ 392 (1035)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN~d~~~~ei~~Lr~eI~~Lq 392 (1035)
..+||||||-||+||+++|||||+|+|||++||++.||+|||+|||||+|||+|+|+++||.|+....|+.|++|+.+|+
T Consensus 295 s~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLk 374 (1221)
T KOG0245|consen 295 SDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLK 374 (1221)
T ss_pred CccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCC-----------ChHHHHHHHHHHHHHHHHHHH
Q 001664 393 AELCARAGGA-----------PSDEVQVLKGRIAWLEATNED 423 (1035)
Q Consensus 393 ~eL~~~~~~~-----------~~~e~q~L~eri~~Le~e~~~ 423 (1035)
..|.....+. +..++.++.++++.-+....+
T Consensus 375 sll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mae 416 (1221)
T KOG0245|consen 375 SLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAE 416 (1221)
T ss_pred HHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 9987553321 133455555555544433333
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=8.7e-86 Score=740.04 Aligned_cols=338 Identities=42% Similarity=0.689 Sum_probs=312.2
Q ss_pred CCCCceEEEEEeCCCCCchhccCCceEEEEeCCCceeeecC----eeEEeceEeCCCCCCCcccccccchhhHHHhhcCC
Q 001664 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT----HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (1035)
Q Consensus 5 ~~~~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~~----~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~ 80 (1035)
++.|+|+|+||+||++..|...+......+.++...|.+.+ .+|.||+||.|+++ |.+||..++.|+|++||.||
T Consensus 4 ~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnat-Qe~Vy~~~a~~Iv~dVL~GY 82 (607)
T KOG0240|consen 4 SAECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNAT-QEDVYEFAAKPIVDDVLLGY 82 (607)
T ss_pred CCCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCcc-HHHHHHHHHHHHHHHHhccc
Confidence 36799999999999999998888776666666566677765 89999999999876 89999999999999999999
Q ss_pred CccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCccccccccc
Q 001664 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~~ 160 (1035)
|+||||||||||||||||.|...+....|||||++++||++|.+.....+|.|.|||||||+|+|+|||+|.
T Consensus 83 NGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~-------- 154 (607)
T KOG0240|consen 83 NGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE-------- 154 (607)
T ss_pred ceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc--------
Confidence 999999999999999999987766677899999999999999999888999999999999999999999864
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeec
Q 001664 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (1035)
Q Consensus 161 ~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~~ 240 (1035)
+.++.|++|.+.+++|.|++++.|.++++++.++..|..+|+++.|+||.+|||||+||+|+|.|...
T Consensus 155 -----------k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~- 222 (607)
T KOG0240|consen 155 -----------KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENV- 222 (607)
T ss_pred -----------cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccc-
Confidence 35789999999999999999999999999999999999999999999999999999999999998532
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 001664 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (1035)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRd 320 (1035)
.+...++|+|.||||||||+++++|+.|.-+.|+++||+||.|||+||+||+++. .+||||||
T Consensus 223 -------------e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~----~shipYRD 285 (607)
T KOG0240|consen 223 -------------EDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGP----KSHIPYRD 285 (607)
T ss_pred -------------cchhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCC----CCCCcchh
Confidence 2345788999999999999999999999999999999999999999999999985 36999999
Q ss_pred ChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHH
Q 001664 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSD 380 (1035)
Q Consensus 321 SkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN~d~~~~e 380 (1035)
|||||||||+|||||+|++|+|+||+..|..||.+||+|++||+.|+|.+.+|......+
T Consensus 286 SKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~ 345 (607)
T KOG0240|consen 286 SKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEE 345 (607)
T ss_pred hHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHH
Confidence 999999999999999999999999999999999999999999999999999998655444
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.3e-83 Score=776.23 Aligned_cols=354 Identities=41% Similarity=0.615 Sum_probs=304.8
Q ss_pred CCceEEEEEeCCCCCchhccCCceEEEEeCCCceeeecCeeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEe
Q 001664 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (1035)
Q Consensus 7 ~~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~a 86 (1035)
+++|+|||||||++..|. +.. ++... .+..+.+..+.|+||+||+++++ |++||+.++.|+|+++|+|||+||||
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~-iV~~~-s~dsl~I~~qtFtFD~VFdp~aT-QedVFe~vv~PLV~svLdGyNaTIFA 171 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEM-IVQKM-SNDSLTINGQTFTFDSIADPEST-QEDIFQLVGAPLVENCLAGFNSSVFA 171 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCe-eEEEc-CCCeEEEeCcEEeCCeeeCCCCC-HHHHHHHHHHHHHHHHhcCCcceeec
Confidence 579999999999998863 333 33333 34456778899999999999866 89999999999999999999999999
Q ss_pred eccCCCCccccccCCCC-------CCCcccchhHHHHHHHHHHHhh-----cccceEEEEeehhhhhhhHHhhhcCCccc
Q 001664 87 YGQTGSGKTYTMGTGLR-------EGFQTGLIPQVMNALFNKIETL-----RHQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (1035)
Q Consensus 87 YGqTGSGKTyTm~G~~~-------~~~~~Giipr~~~~LF~~i~~~-----~~~~~~~V~vS~~EIYnE~v~DLL~~~~~ 154 (1035)
||||||||||||+|+.. .+..+|||||++++||..|... .....|.|+|||+|||||.|||||++..
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~- 250 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ- 250 (1320)
T ss_pred CCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc-
Confidence 99999999999999653 2457899999999999999653 2346799999999999999999997532
Q ss_pred ccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEE
Q 001664 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (1035)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v 234 (1035)
..+.|++++.++++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 251 ------------------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~V 312 (1320)
T PLN03188 251 ------------------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVV 312 (1320)
T ss_pred ------------------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEE
Confidence 35889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCC
Q 001664 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (1035)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~ 314 (1035)
++..... .+.......|+|+|||||||||.+++++.|.+++|+++||+||++||+||.+|+.....++..
T Consensus 313 es~~k~~----------~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~ 382 (1320)
T PLN03188 313 ESRCKSV----------ADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQR 382 (1320)
T ss_pred EEeeccc----------CCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCC
Confidence 8753211 011233568999999999999999999999999999999999999999999999755444567
Q ss_pred cccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccch------HHHHHHHHHH
Q 001664 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLIS------SDMQKLRQQL 388 (1035)
Q Consensus 315 ~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN~d~~~------~ei~~Lr~eI 388 (1035)
||||||||||+||+|+|||||+|+|||||||+..++.||++||+||+||+.|+|+|++|..... ..|..|+.+|
T Consensus 383 HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL 462 (1320)
T PLN03188 383 HIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDEL 462 (1320)
T ss_pred cCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986422 2344455555
Q ss_pred HHHHHH
Q 001664 389 KYLQAE 394 (1035)
Q Consensus 389 ~~Lq~e 394 (1035)
..|+..
T Consensus 463 ~rLK~~ 468 (1320)
T PLN03188 463 QRVKAN 468 (1320)
T ss_pred HHHHHh
Confidence 555544
No 7
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-80 Score=746.47 Aligned_cols=350 Identities=45% Similarity=0.686 Sum_probs=305.6
Q ss_pred CCCceEEEEEeCCCCCchhccCCceEEEEeCCCceeeec----------CeeEEeceEeCCCCCCCcccccccchhhHHH
Q 001664 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----------THSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (1035)
Q Consensus 6 ~~~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~----------~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~ 75 (1035)
....|.|+|||||+++.+...+ ..|.....++..+... ...|.||+||+++++ |.+||+.+++|+|++
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t-~~~VYe~~tkpiv~~ 81 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARG-DRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEEST-QEDVYERTTKPLLLS 81 (675)
T ss_pred ccceeEEEEEeCCCCccccccC-CccceEecCCceeEeeccccccccccccceeeeeecCCCCC-HHHHHHhccHHHHHH
Confidence 3468999999999999853322 2233333222222111 378999999999877 899999999999999
Q ss_pred hhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCcccc
Q 001664 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (1035)
Q Consensus 76 ~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~ 155 (1035)
|+.||||||||||||||||||||.|. ...|||||.++.+||+.|.... ...|.|.|||+|||||.|+|||+|..
T Consensus 82 ~l~G~N~TVFAYG~TgSGKTyTM~G~---~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~-- 155 (675)
T KOG0242|consen 82 VLEGFNATVFAYGQTGSGKTYTMSGS---EDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG-- 155 (675)
T ss_pred HhcCcccceeeecCCCCCCceEEecc---CCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC--
Confidence 99999999999999999999999885 4559999999999999999876 78999999999999999999998643
Q ss_pred cccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEE
Q 001664 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (1035)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~ 235 (1035)
+++.|+||+.+|++|+||++..|.|.++++.+|..|..+|+++.|++|..|||||+||+|+|.
T Consensus 156 -----------------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~ 218 (675)
T KOG0242|consen 156 -----------------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVE 218 (675)
T ss_pred -----------------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEE
Confidence 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCc
Q 001664 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVH 315 (1035)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~ 315 (1035)
+..+.. . . ..|+|+|||||||||+.+|++.|.|++||.+||+||++||+||++|+++.. ..|
T Consensus 219 s~~~~~-----------~---~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~---~~h 280 (675)
T KOG0242|consen 219 SRGREA-----------S---S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKR---PRH 280 (675)
T ss_pred eccccc-----------c---c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccc---cCC
Confidence 854311 0 1 568999999999999999999999999999999999999999999998754 239
Q ss_pred ccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHH-HHHHHHHHHHHHH
Q 001664 316 VPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM-QKLRQQLKYLQAE 394 (1035)
Q Consensus 316 vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN~d~~~~ei-~~Lr~eI~~Lq~e 394 (1035)
|||||||||||||++|||||+|+|||||+|+..+++||.+||+||+||++|++++.+|.-.....+ ..++.++..|+.+
T Consensus 281 ipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e 360 (675)
T KOG0242|consen 281 IPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAE 360 (675)
T ss_pred CCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999976655443 3445788888888
Q ss_pred Hhhh
Q 001664 395 LCAR 398 (1035)
Q Consensus 395 L~~~ 398 (1035)
+...
T Consensus 361 ~~~~ 364 (675)
T KOG0242|consen 361 LERL 364 (675)
T ss_pred HHhh
Confidence 7654
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.6e-79 Score=696.66 Aligned_cols=325 Identities=42% Similarity=0.604 Sum_probs=289.4
Q ss_pred ceEEEEEeCCCCCchhccCCceEEEEeCCCceeeec--CeeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEe
Q 001664 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (1035)
Q Consensus 9 ~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~--~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~a 86 (1035)
+|+|+|||||+...|...+...|+.+..+...+..+ .+.|.||+||+++++ |++||+.++.|+|+++|+|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~p~v~~~~~G~n~ti~a 80 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTN-QEDVFQSVGKPLVEDCLSGYNGSIFA 80 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCC-HHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 799999999999999877777788776555444333 379999999999866 89999999999999999999999999
Q ss_pred eccCCCCccccccCCCCC-----CCcccchhHHHHHHHHHHHhh----cccceEEEEeehhhhhhhHHhhhcCCcccccc
Q 001664 87 YGQTGSGKTYTMGTGLRE-----GFQTGLIPQVMNALFNKIETL----RHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (1035)
Q Consensus 87 YGqTGSGKTyTm~G~~~~-----~~~~Giipr~~~~LF~~i~~~----~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~ 157 (1035)
||||||||||||+|+... ...+|||||++++||..+... .....|.|+|||+|||||.|||||++..
T Consensus 81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~---- 156 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS---- 156 (337)
T ss_pred eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC----
Confidence 999999999999997653 246899999999999998754 2346899999999999999999997532
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEee
Q 001664 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (1035)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~ 237 (1035)
..+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 157 ---------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 221 (337)
T cd01373 157 ---------------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESW 221 (337)
T ss_pred ---------------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEe
Confidence 35889999999999999999999999999999999999999999999999999999999999875
Q ss_pred eecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCccc
Q 001664 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (1035)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vP 317 (1035)
.... .......|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|++.... +..|||
T Consensus 222 ~~~~------------~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~-~~~~ip 288 (337)
T cd01373 222 EKKA------------SSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG-KQRHVP 288 (337)
T ss_pred ecCC------------CCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC-CCCccC
Confidence 3211 112456799999999999999999999999999999999999999999999875432 357999
Q ss_pred CCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001664 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1035)
Q Consensus 318 yRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~I 366 (1035)
|||||||+||+|+|||||+|+|||||||+..+++||++||+||+||+.|
T Consensus 289 yR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 289 YRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999987
No 9
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-79 Score=698.71 Aligned_cols=362 Identities=42% Similarity=0.633 Sum_probs=321.0
Q ss_pred CCceEEEEEeCCCCCchhccCCceEEEEeCCCceeee-----------cCeeEEeceEeCCCC------CCCcccccccc
Q 001664 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNGG------SPSSAMFGECV 69 (1035)
Q Consensus 7 ~~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~-----------~~~~F~FD~VF~~~~------s~q~~vy~~~v 69 (1035)
+..|+|+|||||++.+|..-...+.|.|..+...+.+ ++++|.||++|.+.+ +.|+.||+...
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 5689999999999999987776666666544333322 358999999998653 24789999999
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhc-ccceEEEEeehhhhhhhHHhhh
Q 001664 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDL 148 (1035)
Q Consensus 70 ~plV~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~V~vS~~EIYnE~v~DL 148 (1035)
..+|+++|+|||+||||||||||||||||.|. ..++|||||++..||..|.... ....|.|.|||+|||||++|||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt---~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGT---AEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeecc---CCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 99999999999999999999999999999884 5679999999999999998654 3568999999999999999999
Q ss_pred cCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEE
Q 001664 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHA 228 (1035)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~ 228 (1035)
|+|... +..+.+++++-.|.||.||++..|+|++++-.+|..|+++|++++|+||..|||||+
T Consensus 160 LdPk~s-----------------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHa 222 (1714)
T KOG0241|consen 160 LDPKGS-----------------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHA 222 (1714)
T ss_pred hCCCCC-----------------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccce
Confidence 998642 357899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhc
Q 001664 229 IFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (1035)
Q Consensus 229 IftI~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~ 308 (1035)
+|.|.|.|.-. .+.++.. -...|+|.|||||||||+.+||+.|.|++||.+||+||++||.||++|++.+
T Consensus 223 VFslvvtQ~l~----D~ktg~S------geKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 223 VFSLVVTQTLY----DLKTGHS------GEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred eEEEEEeeEEe----ccccCcc------hhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 99999998532 1112211 2356899999999999999999999999999999999999999999999865
Q ss_pred cC-CCCCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHH
Q 001664 309 KR-REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQ 387 (1035)
Q Consensus 309 ~~-~~~~~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN~d~~~~ei~~Lr~e 387 (1035)
.. +++.+||||||-||+||+|+|||||+|+||+||||+.+||+|||+|||||.||++|+|..+||.|+....+..++++
T Consensus 293 n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReE 372 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREE 372 (1714)
T ss_pred cCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHH
Confidence 43 24569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 001664 388 LKYLQAELCAR 398 (1035)
Q Consensus 388 I~~Lq~eL~~~ 398 (1035)
++.|+..|...
T Consensus 373 ve~lr~qL~~a 383 (1714)
T KOG0241|consen 373 VEKLREQLEQA 383 (1714)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=5.1e-79 Score=692.78 Aligned_cols=322 Identities=47% Similarity=0.695 Sum_probs=291.8
Q ss_pred ceEEEEEeCCCCCchhccCCceEEEEeCCCceee----------------ecCeeEEeceEeCCCCCCCcccccccchhh
Q 001664 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ----------------IGTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (1035)
Q Consensus 9 ~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~----------------~~~~~F~FD~VF~~~~s~q~~vy~~~v~pl 72 (1035)
+|+|+|||||+.+.|...+...|+.+.++...+. ...+.|+||+||+++++ |++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~-q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETST-QEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCC-HHHHHHHHHHHH
Confidence 5999999999999998888888888765432111 12478999999999876 899999999999
Q ss_pred HHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCc
Q 001664 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (1035)
Q Consensus 73 V~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~ 152 (1035)
|+++++|||+||||||||||||||||+|+. ..+|||||++++||+.++.......|.|+|||+|||||.|+|||++.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD---SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC---CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999864 56899999999999999987777899999999999999999999763
Q ss_pred ccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEE
Q 001664 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (1035)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI 232 (1035)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|
T Consensus 157 -------------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i 217 (338)
T cd01370 157 -------------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQI 217 (338)
T ss_pred -------------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEE
Confidence 2468999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCC
Q 001664 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (1035)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~ 312 (1035)
+|.+.... .+.......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+...+ .
T Consensus 218 ~i~~~~~~-----------~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~ 284 (338)
T cd01370 218 TVRQKDRT-----------ASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--K 284 (338)
T ss_pred EEEEEecC-----------CCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--C
Confidence 99985431 1113456789999999999999999999999999999999999999999999998753 3
Q ss_pred CCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001664 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1035)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~I 366 (1035)
..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 285 ~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 469999999999999999999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=5e-77 Score=677.78 Aligned_cols=326 Identities=36% Similarity=0.591 Sum_probs=286.9
Q ss_pred ceEEEEEeCCCCCchhccCCceEEEEeCCCceeee-----------------cCeeEEeceEeCCCCCCCcccccccchh
Q 001664 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (1035)
Q Consensus 9 ~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~-----------------~~~~F~FD~VF~~~~s~q~~vy~~~v~p 71 (1035)
+|+|+|||||+.+.|...+...|+.+.++. .+.+ ..+.|.||+||+++++ |++||+.++.|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~t-q~~vy~~~~~p 79 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTT-QKEFFEGTALP 79 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCCC-HHHHHHHHHHH
Confidence 799999999999999877777787765433 2221 2468999999999866 89999999999
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCC
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~ 151 (1035)
+|+++++|||+||||||||||||||||+|+. ..+|||||++++||+.+.. |.|+|||+|||||.|||||++
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP---GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCC
Confidence 9999999999999999999999999999964 5799999999999999876 999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEE
Q 001664 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231 (1035)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ift 231 (1035)
.... .....++.|+++++++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+
T Consensus 151 ~~~~-------------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~ 217 (345)
T cd01368 151 SPSS-------------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFT 217 (345)
T ss_pred cccc-------------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEE
Confidence 5421 012357999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCC
Q 001664 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRR 311 (1035)
Q Consensus 232 I~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~ 311 (1035)
|+|.+...... +. ..........|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+......
T Consensus 218 i~v~~~~~~~~-----~~-~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~ 291 (345)
T cd01368 218 IKLVQAPGDSD-----GD-VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG 291 (345)
T ss_pred EEEEEeccCcc-----cc-cccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 99987543211 00 1112345678999999999999999999999999999999999999999999999865443
Q ss_pred -CCCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001664 312 -EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1035)
Q Consensus 312 -~~~~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar 364 (1035)
...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 292 ~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 292 STNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.2e-76 Score=678.82 Aligned_cols=336 Identities=45% Similarity=0.672 Sum_probs=298.7
Q ss_pred CceEEEEEeCCCCCchhccCCceEEEEeCCCceeee---------cCeeEEeceEeCCC-------CCCCcccccccchh
Q 001664 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNG-------GSPSSAMFGECVAP 71 (1035)
Q Consensus 8 ~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~---------~~~~F~FD~VF~~~-------~s~q~~vy~~~v~p 71 (1035)
.+|+|+|||||+...|...+...|+.+.+....+.. ..+.|+||+||++. ++ |++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~t-q~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYAS-QEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCC-HHHHHHHHHHH
Confidence 479999999999999988888888877663332222 23689999999886 55 89999999999
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcc-cceEEEEeehhhhhhhHHhhhcC
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLD 150 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~V~vS~~EIYnE~v~DLL~ 150 (1035)
+|+++++|||+||||||||||||||||+|+.. .+|||||++++||+.+..... ...|.|+|||+|||||.|||||+
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 156 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLN 156 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCC
Confidence 99999999999999999999999999999654 689999999999999987654 57899999999999999999998
Q ss_pred CcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEE
Q 001664 151 SVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (1035)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 230 (1035)
+.. .....+.+++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||
T Consensus 157 ~~~----------------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~ 220 (356)
T cd01365 157 PKK----------------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVF 220 (356)
T ss_pred CCc----------------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEE
Confidence 643 1234689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccC
Q 001664 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKR 310 (1035)
Q Consensus 231 tI~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~ 310 (1035)
+|+|.+...... ........|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.....
T Consensus 221 ~l~v~~~~~~~~----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~ 290 (356)
T cd01365 221 TIVLTQKKLDKE----------TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSA 290 (356)
T ss_pred EEEEEEEecccC----------CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 999988543210 1234567899999999999999999999999999999999999999999999986532
Q ss_pred ---CCCCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 001664 311 ---REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (1035)
Q Consensus 311 ---~~~~~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN 373 (1035)
+...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||++|++|+|+|++|
T Consensus 291 ~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 291 KSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 245799999999999999999999999999999999999999999999999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.5e-76 Score=675.85 Aligned_cols=333 Identities=44% Similarity=0.694 Sum_probs=301.0
Q ss_pred CceEEEEEeCCCCCchhccCCceEEEEeCCCceeee--------cCeeEEeceEeCCCCCCCcccccccchhhHHHhhcC
Q 001664 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (1035)
Q Consensus 8 ~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~--------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G 79 (1035)
++|+|+|||||+...|...++..++.+...+.+|.+ ..+.|+||+||+++++ |++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~-q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEAD-QIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCC-HHHHHHHHHHHHHHHHhCC
Confidence 589999999999999988888888888776666655 3578999999999876 8999999999999999999
Q ss_pred CCccEEeeccCCCCccccccCCCCC--------CCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCC
Q 001664 80 YNATVLAYGQTGSGKTYTMGTGLRE--------GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (1035)
Q Consensus 80 ~n~tI~aYGqTGSGKTyTm~G~~~~--------~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~ 151 (1035)
||+||||||||||||||||+|+... ...+|||||++.+||+.+... ...|.|+|||+|||||.|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997654 456899999999999999874 678999999999999999999986
Q ss_pred cccccccccCCCCCccccCCCCCceEEec--CCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEE
Q 001664 152 VSVSKSVTANGHAGKVSISGRPPIQIRES--SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (1035)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~ire~--~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~I 229 (1035)
.. ....++.++++ +.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+|
T Consensus 159 ~~----------------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i 222 (352)
T cd01364 159 ES----------------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSI 222 (352)
T ss_pred cc----------------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceE
Confidence 43 12457899999 5999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhcc
Q 001664 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK 309 (1035)
Q Consensus 230 ftI~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~ 309 (1035)
|+|+|.+..... ........|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+...
T Consensus 223 ~~i~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~- 290 (352)
T cd01364 223 FSITIHIKETTI-----------SGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS- 290 (352)
T ss_pred EEEEEEEeccCC-----------CCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-
Confidence 999998753210 11233467999999999999999999999999999999999999999999998754
Q ss_pred CCCCCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccc
Q 001664 310 RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (1035)
Q Consensus 310 ~~~~~~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN~d 375 (1035)
.|||||+|+||+||+|+|||||+|+||+||||+..+++||++||+||++|++|+|+|.+|.+
T Consensus 291 ----~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 291 ----PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred ----CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 49999999999999999999999999999999999999999999999999999999999964
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.6e-76 Score=672.22 Aligned_cols=337 Identities=64% Similarity=0.967 Sum_probs=305.5
Q ss_pred CceEEEEEeCCCCCchhccCCceEEEEeCCCceeeec-CeeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEe
Q 001664 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (1035)
Q Consensus 8 ~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~-~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~a 86 (1035)
++|+|+||+||+...|...++..|+.+.++++++.++ .+.|+||+||+++++ |++||+.++.|+|+.+++|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTS-QEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCC-HHHHHHHHHHHHHHHHhCCCccceee
Confidence 5899999999999999988999999999999999887 689999999998876 89999999999999999999999999
Q ss_pred eccCCCCccccccCCCCC---CCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCcccccccccCCC
Q 001664 87 YGQTGSGKTYTMGTGLRE---GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (1035)
Q Consensus 87 YGqTGSGKTyTm~G~~~~---~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~ 163 (1035)
||||||||||||+|+... ...+|||||++++||+.+.......+|.|.|||+|||||.|+|||.+..
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 149 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST---------- 149 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc----------
Confidence 999999999999987642 5679999999999999999877778999999999999999999998643
Q ss_pred CCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccC
Q 001664 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (1035)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~~~~~ 243 (1035)
...+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.......
T Consensus 150 ------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~ 223 (341)
T cd01372 150 ------SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223 (341)
T ss_pred ------cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcc
Confidence 12357899999999999999999999999999999999999999999999999999999999999986542111
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCCCChh
Q 001664 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (1035)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkL 323 (1035)
. ....+.......|+|+||||||||+.+++++.|.+++|+.+||+||++|++||.+|+.+.+ +..|||||||+|
T Consensus 224 ~----~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~L 297 (341)
T cd01372 224 A----PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKL 297 (341)
T ss_pred c----cccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHH
Confidence 0 0111233457889999999999999999999999999999999999999999999997653 356999999999
Q ss_pred hhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhccc
Q 001664 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (1035)
Q Consensus 324 TrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~Ik 367 (1035)
|+||+|+|||||+|+||+||||+..+++||++||+||+||++||
T Consensus 298 T~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 298 TRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999996
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=8.7e-75 Score=657.62 Aligned_cols=323 Identities=48% Similarity=0.713 Sum_probs=293.5
Q ss_pred ceEEEEEeCCCCCchhccCCceEEEEeCCCceeeec---------CeeEEeceEeCCCCCCCcccccccchhhHHHhhcC
Q 001664 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (1035)
Q Consensus 9 ~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~---------~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G 79 (1035)
+|+|+|||||+.+.|...++..++.+.+++.+|.+. .+.|.||+||+++++ |++||+.++.|+|+++++|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNST-QEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCcc-HHHHHHHHHHHHHHHHhCC
Confidence 799999999999999888888888887776666542 367999999999876 8999999999999999999
Q ss_pred CCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCcccccccc
Q 001664 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (1035)
Q Consensus 80 ~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~ 159 (1035)
||+||||||+|||||||||+|+......+|||||++++||+.+..... ..|.|.|||+|||||.|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~------ 153 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ------ 153 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC------
Confidence 999999999999999999999877677899999999999999987543 7899999999999999999997532
Q ss_pred cCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeee
Q 001664 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (1035)
Q Consensus 160 ~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~ 239 (1035)
..++.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|++...
T Consensus 154 ------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 154 ------------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred ------------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 23688999999999999999999999999999999999999999999999999999999999987543
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCC
Q 001664 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (1035)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyR 319 (1035)
.. ........|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+|++++ ..|||||
T Consensus 222 ~~-----------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~----~~~ipyR 286 (333)
T cd01371 222 GE-----------DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK----STHIPYR 286 (333)
T ss_pred cC-----------CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC----CCcCCCc
Confidence 21 11234668999999999999999999999999999999999999999999998754 3599999
Q ss_pred CChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001664 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1035)
Q Consensus 320 dSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~I 366 (1035)
|||||+||+|+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus 287 ~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 287 DSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999987
No 16
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1e-74 Score=653.85 Aligned_cols=307 Identities=42% Similarity=0.623 Sum_probs=277.4
Q ss_pred ceEEEEEeCCCCCchhccCCceEEEEeCCCceeee-------------cCeeEEeceEeCCCCCCCcccccccchhhHHH
Q 001664 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (1035)
Q Consensus 9 ~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~-------------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~ 75 (1035)
+|+|+|||||+.+.|...+...++.+.++ ..+.+ ..+.|+||+||+++++ |++||+.++.|+|+.
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vf~~~~~plv~~ 79 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVT-NEEVYRSTVKPLIPH 79 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCC-HHHHHHHHHHHHHHH
Confidence 79999999999999987666666665443 22222 1478999999999876 899999999999999
Q ss_pred hhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCcccc
Q 001664 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (1035)
Q Consensus 76 ~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~ 155 (1035)
+++|||+||||||||||||||||+|+. ..+|||||++++||+.++... ..|.|+|||+|||||.|+|||++.
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--- 151 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDE---NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDR--- 151 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcC---CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCc---
Confidence 999999999999999999999999864 568999999999999998754 689999999999999999999751
Q ss_pred cccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEE
Q 001664 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (1035)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~ 235 (1035)
+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.
T Consensus 152 -----------------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~ 214 (322)
T cd01367 152 -----------------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILK 214 (322)
T ss_pred -----------------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEE
Confidence 368999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccC-CCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCC
Q 001664 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (1035)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~ 314 (1035)
+... ....|+|+|||||||||...++ ..|.+++|+.+||+||++|++||.+|+.+. .
T Consensus 215 ~~~~-----------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-----~ 272 (322)
T cd01367 215 NKKL-----------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-----A 272 (322)
T ss_pred EecC-----------------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-----C
Confidence 7421 3467999999999999998765 578999999999999999999999998764 4
Q ss_pred cccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001664 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1035)
Q Consensus 315 ~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar 364 (1035)
||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|++
T Consensus 273 ~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 273 HVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred cCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999986
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.8e-74 Score=653.78 Aligned_cols=320 Identities=44% Similarity=0.710 Sum_probs=293.9
Q ss_pred CceEEEEEeCCCCCchhccCCceEEEEeCCCceeeec----CeeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCcc
Q 001664 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (1035)
Q Consensus 8 ~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~----~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~t 83 (1035)
++|+|+|||||+...|...+...|+.+.++ ..|.+. .+.|.||+||+++++ |++||+.++.|+|+.+++|||+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNTT-QEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCCC-HHHHHHHHHHHHHHHHHcCccce
Confidence 589999999999999977777788887655 456554 579999999999866 89999999999999999999999
Q ss_pred EEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCcccccccccCCC
Q 001664 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~ 163 (1035)
|||||+|||||||||+|+......+|||||++++||+.+.......+|.|+|||+|||||.|+|||++.
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------- 148 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS----------- 148 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc-----------
Confidence 999999999999999998776678999999999999999987777899999999999999999999763
Q ss_pred CCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccC
Q 001664 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (1035)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~~~~~ 243 (1035)
...+.+++++.++++|.|++++.|.|.+|+..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 --------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~--- 217 (325)
T cd01369 149 --------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE--- 217 (325)
T ss_pred --------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC---
Confidence 245889999999999999999999999999999999999999999999999999999999999875321
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCCCChh
Q 001664 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (1035)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkL 323 (1035)
......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+++++ .|||||||+|
T Consensus 218 -----------~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~----~~vpyR~S~L 282 (325)
T cd01369 218 -----------TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS----THIPYRDSKL 282 (325)
T ss_pred -----------CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC----CcCCCccCHH
Confidence 1235789999999999999999999999999999999999999999999987642 5999999999
Q ss_pred hhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001664 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1035)
Q Consensus 324 TrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~I 366 (1035)
|+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 283 T~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 283 TRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.5e-73 Score=642.02 Aligned_cols=308 Identities=39% Similarity=0.620 Sum_probs=277.4
Q ss_pred ceEEEEEeCCCCCchhccCCceEEEEeCCCc----eeee-------cCeeEEeceEeCCCCCCCcccccccchhhHHHhh
Q 001664 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP----QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (1035)
Q Consensus 9 ~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~----~v~~-------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l 77 (1035)
+|+|+|||||+.+.|. +...|+.+..+++ .+.+ ..+.|.||+||+++++ |++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECT-QEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCC-HHHHHHHHHHHHHHHHh
Confidence 5899999999998883 4456776654422 3332 2468999999998865 89999999999999999
Q ss_pred cCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCcccccc
Q 001664 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (1035)
Q Consensus 78 ~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~ 157 (1035)
+|||+||||||||||||||||+|++ ..+|||||++++||+.++.. ...|.|+|||+|||||.|+|||++.
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~---~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~----- 147 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDP---NEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPA----- 147 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCc---CccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCC-----
Confidence 9999999999999999999999965 36899999999999988764 3679999999999999999999763
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEee
Q 001664 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (1035)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~ 237 (1035)
...+.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 148 --------------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 213 (319)
T cd01376 148 --------------KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP 213 (319)
T ss_pred --------------CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEE
Confidence 235889999999999999999999999999999999999999999999999999999999999875
Q ss_pred eecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCccc
Q 001664 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (1035)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vP 317 (1035)
.. .....|+|+|||||||||..+++..|.+++|+.+||+||++||+||.+|+.+. .|||
T Consensus 214 ~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ip 272 (319)
T cd01376 214 AS----------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIP 272 (319)
T ss_pred CC----------------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCC
Confidence 21 12568999999999999999999999999999999999999999999998754 5999
Q ss_pred CCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001664 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1035)
Q Consensus 318 yRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar 364 (1035)
||||+||+||+|+|||||+|+||+||||...+++||++||+||+|||
T Consensus 273 yr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 273 YRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999986
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6.3e-73 Score=639.88 Aligned_cols=317 Identities=41% Similarity=0.676 Sum_probs=283.8
Q ss_pred ceEEEEEeCCCCCchhccCCceEEEEeCCCceeeec----CeeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccE
Q 001664 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATV 84 (1035)
Q Consensus 9 ~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~----~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI 84 (1035)
+|+|+||+||+...|. .+...++.+..+ ..+.+. .+.|.||+||+++++ |++||+.++.|+|+++++|||+||
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~vf~~~~~-q~~vy~~~~~p~v~~~l~G~n~~i 77 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRVFGGEST-NREVYERIAKPVVRSALEGYNGTI 77 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeEECCCCC-HHHHHHHHHHHHHHHHHCCCceeE
Confidence 5999999999999886 334445555554 444442 589999999999876 899999999999999999999999
Q ss_pred EeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCcccccccccCCCC
Q 001664 85 LAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHA 164 (1035)
Q Consensus 85 ~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~~ 164 (1035)
||||+|||||||||+|+. ..+|||||++++||..+.... ...|.|+|||+|||||.|||||++..
T Consensus 78 ~ayG~tgSGKT~T~~G~~---~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~----------- 142 (321)
T cd01374 78 FAYGQTSSGKTFTMSGDE---QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP----------- 142 (321)
T ss_pred EeecCCCCCCceeccCCC---CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC-----------
Confidence 999999999999999864 568999999999999997754 66899999999999999999998642
Q ss_pred CccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccCC
Q 001664 165 GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244 (1035)
Q Consensus 165 ~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~~~~~~ 244 (1035)
.++.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.....
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--- 211 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--- 211 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC---
Confidence 468999999999999999999999999999999999999999999999999999999999999854211
Q ss_pred CCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCCCChhh
Q 001664 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLT 324 (1035)
Q Consensus 245 ~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkLT 324 (1035)
+.......|+|+|||||||||..+.+ .|.+++|+.+||+||++|++||.+|+.++. ..||||||||||
T Consensus 212 --------~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT 279 (321)
T cd01374 212 --------SESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLT 279 (321)
T ss_pred --------CCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHH
Confidence 12345678999999999999999998 899999999999999999999999998652 359999999999
Q ss_pred hhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001664 325 RLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1035)
Q Consensus 325 rLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~I 366 (1035)
+||+|+|||||+|+|||||||...+++||++||+||+||++|
T Consensus 280 ~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 280 RILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=8.4e-73 Score=641.27 Aligned_cols=319 Identities=39% Similarity=0.590 Sum_probs=279.8
Q ss_pred ceEEEEEeCCCCCchhccCCceEEEEeCCCceeee---------------cCeeEEeceEeCCCCCCCcccccccchhhH
Q 001664 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (1035)
Q Consensus 9 ~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~---------------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV 73 (1035)
+|+|+||+||+...+. .++.+.+.+.++.+ ..+.|+||+||++ ++ |++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~-q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-AS-QEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CC-HHHHHHHHHHHHH
Confidence 5999999999987442 12333333222111 2357999999998 55 8999999999999
Q ss_pred HHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCcc
Q 001664 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (1035)
Q Consensus 74 ~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~ 153 (1035)
+++++|||+||||||||||||||||+|+..+...+|||||++++||+.++.. ....|.|+|||+|||||.|||||++..
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCc
Confidence 9999999999999999999999999998766678999999999999999874 466899999999999999999998753
Q ss_pred cccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEE
Q 001664 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (1035)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~ 233 (1035)
.. ....+.+.|++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+
T Consensus 153 ~~-------------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~ 219 (334)
T cd01375 153 EA-------------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIH 219 (334)
T ss_pred cc-------------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEE
Confidence 21 12346789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCC
Q 001664 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (1035)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~ 313 (1035)
|.+.... +.......|+|+|||||||||..++++.|..++|+.+||+||++|++||.+|+.+. .
T Consensus 220 v~~~~~~------------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~----~ 283 (334)
T cd01375 220 LESRSRE------------AGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA----R 283 (334)
T ss_pred EEEEecC------------CCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC----C
Confidence 9985421 11235678999999999999999999999999999999999999999999998764 3
Q ss_pred CcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001664 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1035)
Q Consensus 314 ~~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar 364 (1035)
.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus 284 ~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 284 THVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999999999985
No 21
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.1e-72 Score=672.56 Aligned_cols=325 Identities=40% Similarity=0.623 Sum_probs=287.2
Q ss_pred CCceEEEEEeCCCCCchhccCCceEEEEeCCCceeee---------cCeeEEeceEeCCCCCCCcccccccchhhHHHhh
Q 001664 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (1035)
Q Consensus 7 ~~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~---------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l 77 (1035)
.|+|+|+|||||+.+.+....+...+ ..++...+.+ ..+.|.||+||+|.++ |++||.+ +.|+|.++|
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~s-Q~~VF~e-~~~lv~S~l 389 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVI-DTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLAS-QDDVFEE-VSPLVQSAL 389 (670)
T ss_pred hcCceEEEEecCCCcccccccccccc-ccCCcceeEeecCCCCCCCccccceeeeecCCccc-HHHHHHH-HHHHHHHHh
Confidence 47999999999999988754322221 2222111222 1235999999999887 8999988 899999999
Q ss_pred cCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCcccccc
Q 001664 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (1035)
Q Consensus 78 ~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~ 157 (1035)
+|||+||||||||||||||||.|+ .+..+|||||++.+||..+......+.|.+.+||+|||||.|+|||++.+
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~---- 463 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES---- 463 (670)
T ss_pred cCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc----
Confidence 999999999999999999999886 55679999999999999999998899999999999999999999997642
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEee
Q 001664 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (1035)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~ 237 (1035)
....+.|+.++++.++|.|++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|...
T Consensus 464 -------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~ 530 (670)
T KOG0239|consen 464 -------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI 530 (670)
T ss_pred -------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc
Confidence 1246889999999999999999999999999999999999999999999999999999999999753
Q ss_pred eecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCccc
Q 001664 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (1035)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vP 317 (1035)
. ...+....+.|+|||||||||+++++++|.|++|+.+||+||++||+||.||+.. ..|||
T Consensus 531 ~--------------~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k-----~~HiP 591 (670)
T KOG0239|consen 531 N--------------ELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK-----RSHIP 591 (670)
T ss_pred c--------------cCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc-----CCCCc
Confidence 1 1234567789999999999999999999999999999999999999999999874 45999
Q ss_pred CCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccc
Q 001664 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVV 372 (1035)
Q Consensus 318 yRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvv 372 (1035)
|||||||+||||||||+++|+|+++|||...++.||+++|+||.|++.+...+..
T Consensus 592 yRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 592 YRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred ccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 9999999999999999999999999999999999999999999999999887764
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=4.5e-71 Score=627.32 Aligned_cols=321 Identities=42% Similarity=0.670 Sum_probs=287.7
Q ss_pred CCceEEEEEeCCCCCchhccCCceEEEEeCCC-ceeeec-----CeeEEeceEeCCCCCCCcccccccchhhHHHhhcCC
Q 001664 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGN-PQVQIG-----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (1035)
Q Consensus 7 ~~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~-~~v~~~-----~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~ 80 (1035)
.++|+|+||+||+...|. .....++.+..++ ..+.+. .+.|+||+||+++++ |++||+. +.|+|+++++||
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~-q~~v~~~-v~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDAS-QEDVFEE-VSPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCC-HHHHHHH-HHHHHHHHhCCC
Confidence 378999999999998876 3334456666553 444432 368999999998865 8999997 699999999999
Q ss_pred CccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcc-cceEEEEeehhhhhhhHHhhhcCCcccccccc
Q 001664 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~ 159 (1035)
|+||||||+|||||||||+|+. ..+||||+++++||+.+..... ...|.|+|||+|||||.|+|||++..
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~------ 148 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPP---ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP------ 148 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCC---CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc------
Confidence 9999999999999999999964 5689999999999999988755 67899999999999999999998643
Q ss_pred cCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeee
Q 001664 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (1035)
Q Consensus 160 ~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~ 239 (1035)
...+++.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 149 ----------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~ 218 (329)
T cd01366 149 ----------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNL 218 (329)
T ss_pred ----------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcC
Confidence 1245799999999999999999999999999999999999999999999999999999999999987532
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCC
Q 001664 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (1035)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyR 319 (1035)
. +.....|+|+||||||||+..++++.|.+++|+.+||+||++|++||.+|+.+ ..|||||
T Consensus 219 ~--------------~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-----~~~ipyr 279 (329)
T cd01366 219 Q--------------TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-----DSHVPYR 279 (329)
T ss_pred C--------------CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-----CCcCCCc
Confidence 1 23567899999999999999999999999999999999999999999999876 3599999
Q ss_pred CChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccC
Q 001664 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQN 368 (1035)
Q Consensus 320 dSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~Ikn 368 (1035)
||+||+||+|+||||++|+||+||||...+++||++||+||+||+.|+|
T Consensus 280 ~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 280 NSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred ccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999999987
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.1e-70 Score=626.04 Aligned_cols=327 Identities=49% Similarity=0.762 Sum_probs=298.2
Q ss_pred ceEEEEEeCCCCCchhccCCceEEEEeCCCc-eeee-------cCeeEEeceEeCCCCCCCcccccccchhhHHHhhcCC
Q 001664 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP-QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (1035)
Q Consensus 9 ~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~-~v~~-------~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~ 80 (1035)
+|+|+|||||+...|...+...|+.+.++.+ .+.+ ..+.|+||+||+++++ |++||+.++.|+|+.++.|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~-q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATAS-QEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCC-hHHHHHHHHHHHHHHHhcCC
Confidence 5999999999999998888888998877654 3443 2378999999998865 89999999999999999999
Q ss_pred CccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcCCccccccccc
Q 001664 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~~ 160 (1035)
|+||||||+|||||||||+|+. ..+||||+++++||+.+........|.|+|||+|||+|.|+|||++.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~~---~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~-------- 148 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGTP---DSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS-------- 148 (335)
T ss_pred ceeEEEeCCCCCCCceEecCCC---CCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--------
Confidence 9999999999999999998853 46899999999999999887667899999999999999999999763
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeec
Q 001664 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (1035)
Q Consensus 161 ~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~~ 240 (1035)
.+++.|++++++++++.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 149 -----------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~- 216 (335)
T smart00129 149 -----------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIK- 216 (335)
T ss_pred -----------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEec-
Confidence 24689999999999999999999999999999999999999999999999999999999999997521
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCCC
Q 001664 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (1035)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRd 320 (1035)
+........|+|+|||||||||..+.++.|.+++|+..||+||.+|++||.+|+++. +..|||||+
T Consensus 217 -----------~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~---~~~~ip~r~ 282 (335)
T smart00129 217 -----------NSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ---KSRHIPYRD 282 (335)
T ss_pred -----------CCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC---CCCCCCCcC
Confidence 122345788999999999999999999999999999999999999999999998753 256999999
Q ss_pred ChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 001664 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (1035)
Q Consensus 321 SkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN 373 (1035)
|+||+||+++|||+++|+||+||||...+++||++||+||+++++|+|+|++|
T Consensus 283 S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 283 SKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999999999999999999999875
No 24
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-68 Score=611.51 Aligned_cols=336 Identities=36% Similarity=0.573 Sum_probs=291.0
Q ss_pred CceEEEEEeCCCCCchhccCCceEEEEeCCCceeee-------------c--CeeEEeceEeCCCCCCCcccccccchhh
Q 001664 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------G--THSFTFDHVYGNGGSPSSAMFGECVAPL 72 (1035)
Q Consensus 8 ~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~-------------~--~~~F~FD~VF~~~~s~q~~vy~~~v~pl 72 (1035)
.+|.|+||+||+.+.. +...|+.|......+-. + .+.|+|.+||+|+++ |.+||+.|+.|+
T Consensus 31 d~v~v~~rvrP~~~~~---~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~t-Q~dvF~~~~~pl 106 (809)
T KOG0247|consen 31 DPVLVVCRVRPLSDAS---EDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVT-QADVFDTTVAPL 106 (809)
T ss_pred cchheeEeecCCCCCc---cccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCcc-HHHHHHHHhHHH
Confidence 4799999999998633 33445555433322211 1 257999999999876 899999999999
Q ss_pred HHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhh---------------------------
Q 001664 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL--------------------------- 125 (1035)
Q Consensus 73 V~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~--------------------------- 125 (1035)
|.+++.|.|..+|+||.|||||||||+|++ ..+||+||+++.||+.|...
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~~---~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGTP---DRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecCC---CCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 999999999999999999999999998864 45899999999999998531
Q ss_pred -------------------------------------cccceEEEEeehhhhhhhHHhhhcCCcccccccccCCCCCccc
Q 001664 126 -------------------------------------RHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVS 168 (1035)
Q Consensus 126 -------------------------------------~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~~~~~~ 168 (1035)
..+..|.|+|||+|||||.|||||.+.+.. +.
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q------~~----- 252 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQ------GK----- 252 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhcccccc------ch-----
Confidence 012459999999999999999999876421 11
Q ss_pred cCCCC-CceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccCCCCC
Q 001664 169 ISGRP-PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDN 247 (1035)
Q Consensus 169 ~~~~~-~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~~~~~~~~~ 247 (1035)
++ ...+++|.+|..||+|+++|.|+|.+|++.+|..|..+|++++|..|..|||||+||+|.|.+....
T Consensus 253 ---~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~------- 322 (809)
T KOG0247|consen 253 ---LQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS------- 322 (809)
T ss_pred ---hhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc-------
Confidence 12 2568899999999999999999999999999999999999999999999999999999999884321
Q ss_pred CCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCCCChhhhhh
Q 001664 248 GTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLL 327 (1035)
Q Consensus 248 ~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkLTrLL 327 (1035)
........|.|.|||||||||..+|++.|.|++||++||.||++||.||.+|..+++.+...+|||||||||+++
T Consensus 323 -----~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlf 397 (809)
T KOG0247|consen 323 -----QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLF 397 (809)
T ss_pred -----cccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHH
Confidence 123567789999999999999999999999999999999999999999999999888777789999999999999
Q ss_pred hccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccccccc
Q 001664 328 QDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDL 376 (1035)
Q Consensus 328 qdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPvvN~d~ 376 (1035)
+.+|.|..+.+||+||+|.+.+|+|+++.|+||.-|..|.+++.++..+
T Consensus 398 q~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~ 446 (809)
T KOG0247|consen 398 KNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQ 446 (809)
T ss_pred HHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccccC
Confidence 9999999999999999999999999999999999999999988876543
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-69 Score=602.13 Aligned_cols=324 Identities=36% Similarity=0.570 Sum_probs=285.3
Q ss_pred CCCCceEEEEEeCCCCCchhccCCceEEEEeCC------Cceeee------cCeeEEeceEeCCCCCCCcccccccchhh
Q 001664 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHG------NPQVQI------GTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (1035)
Q Consensus 5 ~~~~~VkV~vRvRP~~~~E~~~~~~~~v~v~~~------~~~v~~------~~~~F~FD~VF~~~~s~q~~vy~~~v~pl 72 (1035)
.+...|.||||-||++.+|......++++|... .|...+ .++.|.||++|+..++ ++.||..+++||
T Consensus 205 v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~s-Ne~VYrfTa~Pl 283 (676)
T KOG0246|consen 205 VNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESAS-NELVYRFTAKPL 283 (676)
T ss_pred CccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccc-hHHHHHHhhhHH
Confidence 356789999999999999987776666665332 233222 3579999999998876 899999999999
Q ss_pred HHHhhcCCCccEEeeccCCCCccccccCCCCCC---CcccchhHHHHHHHHHHHhh-cccceEEEEeehhhhhhhHHhhh
Q 001664 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG---FQTGLIPQVMNALFNKIETL-RHQMEFQLHVSFIEILKEEVRDL 148 (1035)
Q Consensus 73 V~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~---~~~Giipr~~~~LF~~i~~~-~~~~~~~V~vS~~EIYnE~v~DL 148 (1035)
|..+|+|--+|+||||||||||||||||.|... ...||.-++.+++|..+... -....+.|+|||||||+.+||||
T Consensus 284 V~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDL 363 (676)
T KOG0246|consen 284 VKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDL 363 (676)
T ss_pred HHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhh
Confidence 999999999999999999999999999998753 34699999999999988652 23467999999999999999999
Q ss_pred cCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEE
Q 001664 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHA 228 (1035)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~ 228 (1035)
|+. +..+.+.||.+..|.|.||++..|.+.+|++.+|+.|+..|++|.|..|..||||||
T Consensus 364 L~~--------------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHA 423 (676)
T KOG0246|consen 364 LND--------------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHA 423 (676)
T ss_pred hcc--------------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccce
Confidence 974 346899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCcccccc-CCCccchhhhHHHhHhhHHHHHHHHHhhhh
Q 001664 229 IFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRT-GSDGLRLKEGIHINRGLLALGNVISALGDE 307 (1035)
Q Consensus 229 IftI~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t-~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~ 307 (1035)
||+|.+... .+....|+|.||||||+||...| .++-.+-.||..||+||+||..||.||+.+
T Consensus 424 vfQIilr~~-----------------~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~n 486 (676)
T KOG0246|consen 424 VFQIILRKH-----------------GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN 486 (676)
T ss_pred eEeeeeecC-----------------CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCC
Confidence 999998652 12457899999999999998554 556677889999999999999999999876
Q ss_pred ccCCCCCcccCCCChhhhhhhccCCC-CceeEEEeecCCCCCCHHHHHHHHHHHHHhhcccCccc
Q 001664 308 KKRREGVHVPYRDSKLTRLLQDSLGG-NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (1035)
Q Consensus 308 ~~~~~~~~vPyRdSkLTrLLqdsLgG-ns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~IknkPv 371 (1035)
+ .|+|||.||||.+|+|||=| ||+|+||+||||+..+.+.||||||||+|++..-..+.
T Consensus 487 k-----~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 487 K-----SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred C-----CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 5 49999999999999999977 99999999999999999999999999999999876654
No 26
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=8.3e-69 Score=610.86 Aligned_cols=322 Identities=48% Similarity=0.747 Sum_probs=279.4
Q ss_pred EeCCCCCchhccCCceEEEEeCC---------CceeeecCeeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEE
Q 001664 15 HVRPLIGDERAQGCKECVAVTHG---------NPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVL 85 (1035)
Q Consensus 15 RvRP~~~~E~~~~~~~~v~v~~~---------~~~v~~~~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~ 85 (1035)
||||++..|...+...++.+... ..........|.||+||+++++ |++||+.++.|+|+++|+|||+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDAT-QEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTST-HHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCC-HHHHHHHHHHHHHHHhhcCCceEEE
Confidence 89999999998888777765421 1111123478999999998866 8999999999999999999999999
Q ss_pred eeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhccc--ceEEEEeehhhhhhhHHhhhcCCcccccccccCCC
Q 001664 86 AYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQ--MEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (1035)
Q Consensus 86 aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~--~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~ 163 (1035)
|||+|||||||||+|+ .....+||||+++++||..+...... ..|.|+|||+|||||.|+|||++...
T Consensus 80 ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~--------- 149 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS--------- 149 (335)
T ss_dssp EEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS---------
T ss_pred eecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc---------
Confidence 9999999999999996 33567999999999999999986654 68999999999999999999987531
Q ss_pred CCccccCCCCCceEEecCCCc-EEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeeccc
Q 001664 164 AGKVSISGRPPIQIRESSNGV-ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHS 242 (1035)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~-~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~~~~ 242 (1035)
....++.|++++..| ++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+......
T Consensus 150 ------~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~ 223 (335)
T PF00225_consen 150 ------KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPS 223 (335)
T ss_dssp ------STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTT
T ss_pred ------ccccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 113478999999866 9999999999999999999999999999999999999999999999999998653211
Q ss_pred CCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCC-CccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCCCC
Q 001664 243 VSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS-DGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDS 321 (1035)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~-~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdS 321 (1035)
........|+|+|||||||||.+++++ .|.+++|+..||+||.+|++||.+|+.+ ....|||||||
T Consensus 224 ----------~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~---~~~~~vpyr~S 290 (335)
T PF00225_consen 224 ----------DDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG---SKQSHVPYRDS 290 (335)
T ss_dssp ----------TEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSTSSSCGGGS
T ss_pred ----------ccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc---ccchhhhhhcc
Confidence 000125789999999999999999886 4888999999999999999999999987 23469999999
Q ss_pred hhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 001664 322 KLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (1035)
Q Consensus 322 kLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar~I 366 (1035)
|||+||+|+|||||+|+||+||||...+++||++||+||++|++|
T Consensus 291 kLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 291 KLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999987
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.9e-67 Score=598.06 Aligned_cols=318 Identities=48% Similarity=0.755 Sum_probs=283.7
Q ss_pred ceEEEEEeCCCCCchhccCCceEEEEeCCCceeeec---------CeeEEeceEeCCCCCCCcccccccchhhHHHhhcC
Q 001664 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (1035)
Q Consensus 9 ~VkV~vRvRP~~~~E~~~~~~~~v~v~~~~~~v~~~---------~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G 79 (1035)
+|+|+||+||+...| ..+...|+.+.+++ .|.+. .+.|.||+||+++++ |++||+.++.|+|+.++.|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNK-TVTLTPPKDGRKAGPKSFTFDHVFDPNST-QEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCC-EEEEecCccccCcCceEEECCeEEcCCCC-HHHHHHHHHHHHHHHHhCC
Confidence 599999999999877 34556677766643 34332 379999999999866 8999999999999999999
Q ss_pred CCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcc-cceEEEEeehhhhhhhHHhhhcCCccccccc
Q 001664 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (1035)
Q Consensus 80 ~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~ 158 (1035)
+|+||||||+|||||||||+|+. ..+||||+++++||..+..... ...|.|++||+|||+|.|+|||++..
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~---~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~----- 149 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSP---KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP----- 149 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-----
Confidence 99999999999999999999964 5689999999999999987543 57899999999999999999998642
Q ss_pred ccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeee
Q 001664 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (1035)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~ 238 (1035)
...++.+++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..
T Consensus 150 ------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~ 217 (328)
T cd00106 150 ------------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRN 217 (328)
T ss_pred ------------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEe
Confidence 13578999999999999999999999999999999999999999999999999999999999999854
Q ss_pred ecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccC
Q 001664 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (1035)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPy 318 (1035)
.... ......|+|+||||||||+..+++..|.+++|+..||+||.+|++||.+|+.+.. ..||||
T Consensus 218 ~~~~------------~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~ 282 (328)
T cd00106 218 TTND------------GRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPY 282 (328)
T ss_pred cCCC------------CccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCC
Confidence 3210 1136789999999999999999999999999999999999999999999998652 359999
Q ss_pred CCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001664 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1035)
Q Consensus 319 RdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar 364 (1035)
|+||||+||+|+|||+++|+||+||||...+++||++||+||+|||
T Consensus 283 r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 283 RDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999986
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-61 Score=576.50 Aligned_cols=290 Identities=49% Similarity=0.757 Sum_probs=267.8
Q ss_pred CeeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHh
Q 001664 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIET 124 (1035)
Q Consensus 45 ~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~ 124 (1035)
...|.||+||++.++ |++||+.++.|+++.++.||||||||||||||||||||.|.. ..+||||+++..||+.++.
T Consensus 55 ~~~~~fdkvf~~~~~-q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~---~~~Gii~~~l~~lf~~l~~ 130 (568)
T COG5059 55 EGTYAFDKVFGPSAT-QEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTE---EEPGIIPLSLKELFSKLED 130 (568)
T ss_pred ceEEEEeeccCCCCc-HHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCc---cccchHHHHHHHHHHHHHh
Confidence 346999999999876 899999999999999999999999999999999999998854 6799999999999999998
Q ss_pred hcccceEEEEeehhhhhhhHHhhhcCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHH
Q 001664 125 LRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAAC 204 (1035)
Q Consensus 125 ~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~l 204 (1035)
......|.|.|||+|||||+++|||.+... .+.++++..++++|.|++++.|.+.+|++.+
T Consensus 131 ~~~~~~~~v~is~lEiYnEk~~DLl~~~~~-------------------~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~ 191 (568)
T COG5059 131 LSMTKDFAVSISYLEIYNEKIYDLLSPNEE-------------------SLNIREDSLLGVKVAGLTEKHVSSKEEILDL 191 (568)
T ss_pred cccCcceeeEeehhHHHhhHHHhhccCccc-------------------cccccccCCCceEeecceEEecCChHHHHHH
Confidence 877778999999999999999999987441 2678899999999999999999999999999
Q ss_pred HHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccch
Q 001664 205 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRL 284 (1035)
Q Consensus 205 l~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~ 284 (1035)
|.+|..+|+++.|.+|..|||||+||+|++.+..+... ....++|+||||||||++..++..+.++
T Consensus 192 l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~--------------~~~~~~l~lvDLagSE~~~~~~~~~~r~ 257 (568)
T COG5059 192 LRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG--------------TSETSKLSLVDLAGSERAARTGNRGTRL 257 (568)
T ss_pred HHHhhhhcccccchhccccccceEEEEEEEEEeccCcc--------------ceecceEEEEeeccccccchhhcccchh
Confidence 99999999999999999999999999999998654221 1223789999999999999999999999
Q ss_pred hhhHHHhHhhHHHHHHHHHhhhhccCCCCCcccCCCChhhhhhhccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001664 285 KEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1035)
Q Consensus 285 kE~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar 364 (1035)
+||..||+||++||+||++|.+.+ +..|||||||||||+|+++|||+++|+|||||+|+..++++|.+||+||+||+
T Consensus 258 ~E~~~iN~sLl~Lg~vI~~L~~~~---~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak 334 (568)
T COG5059 258 KEGASINKSLLTLGNVINALGDKK---KSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAK 334 (568)
T ss_pred hhhhhhHhhHHHHHHHHHHHhccc---cCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHh
Confidence 999999999999999999999752 35699999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccc
Q 001664 365 NIQNKPVVNR 374 (1035)
Q Consensus 365 ~IknkPvvN~ 374 (1035)
.|+|++.+|.
T Consensus 335 ~I~~~~~~~~ 344 (568)
T COG5059 335 SIKNKIQVNS 344 (568)
T ss_pred hcCCcccccC
Confidence 9999999996
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=6.7e-49 Score=410.16 Aligned_cols=179 Identities=50% Similarity=0.806 Sum_probs=163.0
Q ss_pred cccccchhhHHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhh
Q 001664 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (1035)
Q Consensus 64 vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE 143 (1035)
||+.++ |+|+.+++|||+||||||||||||||||+|+. .+.||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~---~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR---EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC---CCCCcchHHHHH--------------------------
Confidence 899988 99999999999999999999999999999864 568999999887
Q ss_pred HHhhhcCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCC
Q 001664 144 EVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223 (1035)
Q Consensus 144 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~S 223 (1035)
++.++..|..+|.+++|.+|..|
T Consensus 58 ---------------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~S 80 (186)
T cd01363 58 ---------------------------------------------------------VIDLMDKGNANRTTAATAMNEHS 80 (186)
T ss_pred ---------------------------------------------------------HHHHHhhccccccccccCCCCcc
Confidence 66778889999999999999999
Q ss_pred CCcEEEEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHH
Q 001664 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303 (1035)
Q Consensus 224 SRSH~IftI~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~a 303 (1035)
||||+||+|+|.+..... ........|+|+||||||||+.+++++.|.+++|+.+||+||++|++||.+
T Consensus 81 SRsH~i~~i~v~~~~~~~-----------~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~ 149 (186)
T cd01363 81 SRSHSVFRIHFGGKNALA-----------SATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISA 149 (186)
T ss_pred CcccEEEEEEEEEeecCC-----------CCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999854321 112345789999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcccCCCChhhhhhhccCCCCceeEEEeecCC
Q 001664 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISP 345 (1035)
Q Consensus 304 L~~~~~~~~~~~vPyRdSkLTrLLqdsLgGns~t~mI~~vSP 345 (1035)
|+++. .||||||||||+||+|+|||||+|+||+||||
T Consensus 150 l~~~~-----~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 150 LAERD-----SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HhcCC-----CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 98754 49999999999999999999999999999999
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.94 E-value=3.1e-23 Score=267.42 Aligned_cols=451 Identities=20% Similarity=0.265 Sum_probs=377.1
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccccc
Q 001664 367 QNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQ 446 (1035)
Q Consensus 367 knkPvvN~d~~~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~~~E~~~~~~~ 446 (1035)
+.||.+.......+|.++..++..++.++... .....+++.....+..+...|..+|..++..++.+++.+..
T Consensus 826 kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~-----e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~-- 898 (1930)
T KOG0161|consen 826 KVKPLLKVTKTEEEMRAKEEEIQKLKEELQKS-----ESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLER-- 898 (1930)
T ss_pred HHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 56788888888899999999999999999766 56677788888889999999999999988888877765433
Q ss_pred CCCccccccchhccccccccccchhhhhhhhcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccH
Q 001664 447 EGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDT 526 (1035)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~l~~~~~~l~e~~~~~~~~~~eee~~e~e~~~~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~ 526 (1035)
+......++..+.+......+++...........++.+++.++.++|++.|..+.++. .++
T Consensus 899 ------------------~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~-~Ek 959 (1930)
T KOG0161|consen 899 ------------------LRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLE-LEK 959 (1930)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1111223333333333333333344444555566778999999999999999887766 455
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001664 527 EALRHH---FGKKIMELEEEKRIVQQERDRLLAEIENL------AANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQ 597 (1035)
Q Consensus 527 ~~~k~~---ye~kl~eLEeei~~LqkErd~Ll~~l~~~------~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~ 597 (1035)
.....+ +++.+..+++.+.+|.+|++.+.+.+..+ ++++..+++|+..+++..|.+|+ ..|.++++.+
T Consensus 960 ~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le---~~le~e~~~r 1036 (1930)
T KOG0161|consen 960 NAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLE---VTLEREKRIR 1036 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 544444 78899999999999999999999988876 34566788899999999999999 8899999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHH
Q 001664 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA---LNQRQ 674 (1035)
Q Consensus 598 ~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~---~~~~q 674 (1035)
.+++|.++|.+.+++.+++.|..++.++.+ |..++++++.|+++|+. +++..
T Consensus 1037 ~e~Ek~~rkle~el~~~~e~~~~~~~~~~e-------------------------l~~~l~kke~El~~l~~k~e~e~~~ 1091 (1930)
T KOG0161|consen 1037 MELEKAKRKLEGELKDLQESIEELKKQKEE-------------------------LDNQLKKKESELSQLQSKLEDEQAE 1091 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999988 99999999999999999 77888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Q 001664 675 KMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQ 753 (1035)
Q Consensus 675 ~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~Wl~~ElE~~-~~~~e~~~~~e~l~e~R 753 (1035)
.+.++++++|+++.++.|.+.|+.++.++.++++.+++ |.+|++.+ ..+.|+.+++..+++.+
T Consensus 1092 ~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~d----------------L~~ele~l~~~Lee~~~~t~~q~e~~ 1155 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKELEEELEAERASRAKAERQRRD----------------LSEELEELKEELEEQGGTTAAQLELN 1155 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88999999999999999999999999999999999988 99999999 68999999999999999
Q ss_pred HHHHHHHHHHHhhchhccCCCCCCCCCCCCcccccCChHHHHHHHHHHHHHHhhchHHHHHHHHHhHHHHHHHHhhhccc
Q 001664 754 AALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRG 833 (1035)
Q Consensus 754 ~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~ 833 (1035)
+++..|+.+|++ .++.+...++ ..++.++..|+..+.++..|+++. .+.++..++.
T Consensus 1156 ~k~e~e~~~l~~----------------------~leee~~~~e-~~~~~lr~~~~~~~~el~~qle~l-~~~k~~leke 1211 (1930)
T KOG0161|consen 1156 KKREAEVQKLRR----------------------DLEEETLDHE-AQIEELRKKHADSLAELQEQLEQL-QKDKAKLEKE 1211 (1930)
T ss_pred HHHHHHHHHHHH----------------------HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999998 4444556666 889999999999999999999999 7888899999
Q ss_pred cchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 001664 834 RWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSE-------AQRKELVKQQRMREQAVTI 906 (1035)
Q Consensus 834 r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~-------~~~~~l~~~~~~~e~~~~~ 906 (1035)
+-+....+++....+..+.....+..+....+|.+|.|++.++.++.+.+.++. .+..++.+++.+.|..++.
T Consensus 1212 k~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~ 1291 (1930)
T KOG0161|consen 1212 KSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSA 1291 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999765544 4444555556666666666
Q ss_pred HHhhh
Q 001664 907 ALASS 911 (1035)
Q Consensus 907 ~~~~~ 911 (1035)
+.+..
T Consensus 1292 ~~r~~ 1296 (1930)
T KOG0161|consen 1292 LSRDK 1296 (1930)
T ss_pred HHHHH
Confidence 65543
No 31
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.34 E-value=1.5e-13 Score=173.33 Aligned_cols=239 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHH
Q 001664 648 KELLKLKKEGRKNEFERHKLEA---LNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKS 724 (1035)
Q Consensus 648 kEi~qLk~~~rK~e~ei~~L~~---~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~~~~~~~~~~~~~~~~~ 724 (1035)
+-...|...+.|++.||..+.. ++......|+++++|+.+.+..|+++|+.+|.++.++++.+++
T Consensus 4 ~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~d------------ 71 (859)
T PF01576_consen 4 RQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRD------------ 71 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 4455699999999999999998 7888899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCCCCCCCcccccCChHHHHHHHHHHHH
Q 001664 725 LQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLEN 803 (1035)
Q Consensus 725 ~~~Wl~~ElE~~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~ 803 (1035)
|..||+.+ ..+.|+.+++.++++.+++++.||.+||+ .|++....++ +.+.+
T Consensus 72 ----L~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr----------------------~LEe~~~~~e-~~~~~ 124 (859)
T PF01576_consen 72 ----LSEELEELKERLEEAGGATQAQIELNKKREAELAKLRR----------------------DLEEANLQHE-ATLAE 124 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHH----------------------HHHHHHHHHH-HHHHH
Confidence 99999999 69999999999999999999999999998 4555566677 88999
Q ss_pred HHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 804 MLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALL 883 (1035)
Q Consensus 804 ~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l 883 (1035)
++.+|++++.+|.+||+++ .+.++..+|.|......+.|+...|+.+....++++..++.++.+|.|++.++++.++.+
T Consensus 125 lrkkh~~~~~eL~eqle~l-qk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~ 203 (859)
T PF01576_consen 125 LRKKHQDAVAELNEQLEQL-QKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQR 203 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHhhhccCCCcccccccccccCCCCC
Q 001664 884 KQSEAQRKELVKQ-------QRMREQAVTIALASSASGSSWRSSKHFADDMSGPLS 932 (1035)
Q Consensus 884 ~~~~~~~~~l~~~-------~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1035)
.++......|+.+ +.+.+.+++.+-+. ..++...++|+...|.
T Consensus 204 ~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~------k~~L~~qLeelk~~le 253 (859)
T PF01576_consen 204 NELTEQKAKLQSENSELTRQLEEAESQLSQLQRE------KSSLESQLEELKRQLE 253 (859)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHH
Confidence 7766665555554 44455555544432 3445555666555444
No 32
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.25 E-value=8.6e-07 Score=117.10 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=49.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 001664 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERH 665 (1035)
Q Consensus 597 ~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~ 665 (1035)
-.++.++++.++.+.......+..|++...+-+..+.+.++.....++..+|+-..|..+..-...++.
T Consensus 1159 e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~ 1227 (1930)
T KOG0161|consen 1159 EAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELE 1227 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888777777777777777777777777766666555544444433
No 33
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.75 E-value=0.0001 Score=92.08 Aligned_cols=255 Identities=20% Similarity=0.208 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhhhhhHHHH
Q 001664 502 KELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA--ANSDGHTQKMQDGHTLK 579 (1035)
Q Consensus 502 ~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~--~~~~~~~~KLke~~e~k 579 (1035)
.+++.|..++.+++++++..+ ++...+.+..+++..+++.|.+...... .+...++.+...++-..
T Consensus 508 ~~~~~l~~~~~~~~eele~~q------------~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~ 575 (1317)
T KOG0612|consen 508 AKKRKLEALVRQLEEELEDAQ------------KKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQ 575 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHH
Confidence 344555555666665554432 3344444555555556666665544432 12233444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQK---VQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1035)
Q Consensus 580 L~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~k---v~L~kkmkee~~~~r~~~~~~~kEi~qLk~~ 656 (1035)
+++.+.+..++..+ ...++..+.++...-+.++.+....+.+. ...+.-++++..-.........+++.+++.
T Consensus 576 iq~~~e~~~~~~d~---l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e- 651 (1317)
T KOG0612|consen 576 IQQELEENRDLEDK---LSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE- 651 (1317)
T ss_pred HHHHhhccccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-
Confidence 55555433333322 33444455555555555555555555444 444777788888888888888888888877
Q ss_pred hhhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHH
Q 001664 657 GRKNEFERH------KLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLE 730 (1035)
Q Consensus 657 ~rK~e~ei~------~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~Wl~ 730 (1035)
+++...|+. .++.++++....++..++.+.+..+++ .|..+ ..
T Consensus 652 l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~-----------------------------e~ 700 (1317)
T KOG0612|consen 652 LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDK-----------------------------EA 700 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH-----------------------------HH
Confidence 665555432 355567777777777777777777777 12111 23
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCCCCCCCcccccCChHHHHHHHHHHHHHHhhch
Q 001664 731 HELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSS 809 (1035)
Q Consensus 731 ~ElE~~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~ 809 (1035)
+--++..||.+.+.++++...++.++++++..|+.+--.+ . ...|..++...............||+.+....
T Consensus 701 ~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~----~--~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~ 773 (1317)
T KOG0612|consen 701 QMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQS----Q--EKLNELRRSKDQLITEVLKLQSMLEQEISKRL 773 (1317)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhh----c--cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445557888889999999999999999999998742211 1 23355555555544444445455665555443
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=98.72 E-value=0.0035 Score=81.33 Aligned_cols=66 Identities=6% Similarity=0.027 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 841 MGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIA 907 (1035)
Q Consensus 841 ~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~ 907 (1035)
+.++...+..+-..+...+ .+.+.+.+|.++...++++...+..++....++..++....+.+..+
T Consensus 574 ~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 574 VAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433344444433 35555566666666666666666666665556666666665555554
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=98.67 E-value=0.0025 Score=82.66 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~ 596 (1035)
++.++..++.++..++.+.+.+...+.... . --+.++..|.+++.++..|+.+...
T Consensus 375 ~~~~l~~~~~~l~~l~~el~el~~~l~~~~-------~-~~~~~e~~l~~l~~~~~~l~~~~~~ 430 (880)
T PRK02224 375 AREAVEDRREEIEELEEEIEELRERFGDAP-------V-DLGNAEDFLEELREERDELREREAE 430 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcch-------h-hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554321 0 1244566666666666666544333
No 36
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=0.0018 Score=87.16 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001664 379 SDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRA 436 (1035)
Q Consensus 379 ~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~ 436 (1035)
..+..+..++..++...... ..++..++.++..+..+...+..+|......+.
T Consensus 577 ~~~~~~~~el~~~~~~~~~~-----~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 577 DWLHSKSKEINQTRDRLAKL-----NKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666655544 455666666666666666666666665554443
No 37
>PRK03918 chromosome segregation protein; Provisional
Probab=98.53 E-value=0.013 Score=76.05 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=11.9
Q ss_pred EeeccCCCCccccc
Q 001664 85 LAYGQTGSGKTYTM 98 (1035)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (1035)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 46899999999776
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.52 E-value=0.017 Score=77.12 Aligned_cols=93 Identities=20% Similarity=0.322 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHH
Q 001664 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (1035)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e 577 (1035)
..+..++..++..|+..+.....+.+.+...+... -+++-++..+...++.+.+.|.....+++.+.+....+++..+.
T Consensus 316 ~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~-~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~ 394 (1201)
T PF12128_consen 316 SALNADLARIKSELDEIEQQKKDYEDADIEQLIAR-VDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFN 394 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444333333 24556666666666677777776666665555555566666666
Q ss_pred HHHHHHHHHHHHHH
Q 001664 578 LKLKALEAQILELK 591 (1035)
Q Consensus 578 ~kL~eLE~el~~Lk 591 (1035)
..+..++.++..++
T Consensus 395 ~~~~~~~~~~~~~~ 408 (1201)
T PF12128_consen 395 RQQERLQAQQDEIR 408 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555554
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.48 E-value=0.0041 Score=73.99 Aligned_cols=55 Identities=24% Similarity=0.229 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 853 NVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIA 907 (1035)
Q Consensus 853 ~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~ 907 (1035)
...-..++++.+...+|.|++.-+.-+..+..++..+.++|..-.+..|+.+-.+
T Consensus 403 ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 403 KEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344456788889999999999888888888889999998777777666666443
No 40
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.27 E-value=0.015 Score=77.70 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.1
Q ss_pred EeeccCCCCccccc
Q 001664 85 LAYGQTGSGKTYTM 98 (1035)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (1035)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 34799999999887
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.27 E-value=0.016 Score=77.23 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=20.3
Q ss_pred cccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 66 ~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
...+.|++-.+..|+|+- .||.||||+-.+
T Consensus 12 KSF~~~~~i~f~~~~t~I---vGPNGSGKSNI~ 41 (1163)
T COG1196 12 KSFADPTEINFSPGFTAI---VGPNGSGKSNIV 41 (1163)
T ss_pred ccCCCCeeeecCCCCeEE---ECCCCCchHHHH
Confidence 333445555566677764 499999998766
No 42
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.27 E-value=1.7e-07 Score=119.05 Aligned_cols=340 Identities=23% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcccccc
Q 001664 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQER-------DRLLAEIENLAANSDGH 568 (1035)
Q Consensus 496 ~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkEr-------d~Ll~~l~~~~~~~~~~ 568 (1035)
..++-+.|+..|.++|+.--..+... ...++..|.+.+.+|.+++..+++.+ ..|..++..+...- +.
T Consensus 96 ~~kkrE~El~~Lrr~LEe~~~~~e~~----~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l-~~ 170 (859)
T PF01576_consen 96 LNKKREAELAKLRRDLEEANLQHEAT----LAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQL-DS 170 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HH
Confidence 34455677888887776543322211 13344455555555555555554444 44444444443222 24
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 569 TQKMQDGHTLKLKALEAQILELKKKQES----QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKA 644 (1035)
Q Consensus 569 ~~KLke~~e~kL~eLE~el~~Lkkk~~~----~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~ 644 (1035)
..+-+...++..+.+|.+|.+|+.+..+ ...+...+.++..++..|...+.+...+...|.
T Consensus 171 ~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~--------------- 235 (859)
T PF01576_consen 171 LQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQ--------------- 235 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 4555566677777777777777655443 223333333333333333333333333322211
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHH
Q 001664 645 SREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKS 724 (1035)
Q Consensus 645 ~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~~~~~~~~~~~~~~~~~ 724 (1035)
|....|..+ -.++...-....+.+..|..+...+...+..|++.++....+.....+.-..
T Consensus 236 ---r~k~~L~~q----Leelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk------------ 296 (859)
T PF01576_consen 236 ---REKSSLESQ----LEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSK------------ 296 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHHHHHH----HHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH------------
Confidence 111111111 1111112224444555555555555555555555555443333322221111
Q ss_pred HHHHHHHHHHHH-HhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhchhccCCCCCCCCCCCCcccccCChHHHHHHHHHHH
Q 001664 725 LQKWLEHELEVS-ANVHEVRFK-YEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLE 802 (1035)
Q Consensus 725 ~~~Wl~~ElE~~-~~~~e~~~~-~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le 802 (1035)
+..||..+ ..+++.... ++.+-+.|+++..+|..+.... +.....++.|+
T Consensus 297 ----~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~l------------------------e~~~~~~~~Le 348 (859)
T PF01576_consen 297 ----LNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQL------------------------EEANAKVSSLE 348 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHH
Confidence 22333333 222222222 3344444555555555544311 11223334555
Q ss_pred HHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 803 NMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVAL 882 (1035)
Q Consensus 803 ~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~ 882 (1035)
......+..+.++...|+.+. -..+..+|.....-..+.|.+..+..+......+......++.++..++..+.++...
T Consensus 349 K~k~rL~~EleDl~~eLe~~~-~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~ 427 (859)
T PF01576_consen 349 KTKKRLQGELEDLTSELEKAQ-AAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQ 427 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHH
Confidence 555555555555555554441 1112333333444455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001664 883 LKQSEAQRKELVKQQRMREQA 903 (1035)
Q Consensus 883 l~~~~~~~~~l~~~~~~~e~~ 903 (1035)
+..++.....|+.++......
T Consensus 428 ~e~lere~k~L~~El~dl~~q 448 (859)
T PF01576_consen 428 LEELERENKQLQDELEDLTSQ 448 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHhhccchhh
Confidence 555555444455444444333
No 43
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.27 E-value=0.059 Score=71.80 Aligned_cols=232 Identities=19% Similarity=0.223 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccchhhhhhH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 001664 535 KKIMELEEEKRIVQQERDRLLAEIENLAA---NSDGHTQKMQDGH---TLKLKALEAQILELKKKQES----QVELLKQK 604 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~---~~~~~~~KLke~~---e~kL~eLE~el~~Lkkk~~~----~~~l~k~k 604 (1035)
+++.-|+..+..+..|.+.|.+....+.. ..+...+.+.+++ ..++..++.++..|+.+..- ..+|....
T Consensus 689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~ 768 (1822)
T KOG4674|consen 689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777665544421 2223334444444 46788999999999977665 55666677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (1035)
Q Consensus 605 ~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE 684 (1035)
.++......|+..+..|+.++..+-.---+.-.++.......++++..|++++..+..+++.+......+-.-++..+++
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~ 848 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDE 848 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 77778888888888888888887766666666778888889999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc--------------ccCCCCCCCCCCchHHHHHHHHHHHHHH----HhHHHHHHHH
Q 001664 685 AAIATKRLKELLEARKSSARENSV--------------NSTGYTTPTGQSNEKSLQKWLEHELEVS----ANVHEVRFKY 746 (1035)
Q Consensus 685 ~~a~~krLke~le~~k~~~~~~e~--------------~~~~~~~~~~~~~~~~~~~Wl~~ElE~~----~~~~e~~~~~ 746 (1035)
+......+...|........+.+- ...+.+.++......-...-|..+++-+ ..+.++....
T Consensus 849 ~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i 928 (1822)
T KOG4674|consen 849 LESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQI 928 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877654433333221 0111011100001111122255555555 4666677777
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 001664 747 EKQSQVQAALADELTILKQV 766 (1035)
Q Consensus 747 e~l~e~R~~l~~El~~Lk~~ 766 (1035)
...++.-...++-|..++..
T Consensus 929 ~~yqe~~~s~eqsl~~~ks~ 948 (1822)
T KOG4674|consen 929 REYQEEYSSLEQSLESVKSE 948 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66677666666666666653
No 44
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.26 E-value=0.034 Score=68.98 Aligned_cols=177 Identities=24% Similarity=0.280 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccccccchhh
Q 001664 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA------ANSDGHTQKM 572 (1035)
Q Consensus 499 ~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~------~~~~~~~~KL 572 (1035)
.+..++..++++|...+.+... ...++.+|..++..|+.+...|...+.-+. +.-+..+.+.
T Consensus 298 tleseiiqlkqkl~dm~~erdt------------dr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e 365 (1195)
T KOG4643|consen 298 TLESEIIQLKQKLDDMRSERDT------------DRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVE 365 (1195)
T ss_pred ChHHHHHHHHHHHHHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHH
Confidence 4566777777777766654322 126677888888888888777765544331 1111122222
Q ss_pred hhhHH------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001664 573 QDGHT------------LKLKALEA-QILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL---QNKIKQEA 636 (1035)
Q Consensus 573 ke~~e------------~kL~eLE~-el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L---~kkmkee~ 636 (1035)
.++.. ..+..|+. +-.++...--.|..|.+.+.+++.++..|++.|.+|.+++++| -|.+..|.
T Consensus 366 ~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ 445 (1195)
T KOG4643|consen 366 NEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFEL 445 (1195)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 11111110 0012223333478888889999999999999999999999985 44444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 001664 637 EQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM----VLQRKTEEAAIATKRLKELLEAR 699 (1035)
Q Consensus 637 ~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~----vL~rK~eE~~a~~krLke~le~~ 699 (1035)
++.........+- +.-..++..+..|.+ ++...++|+.+.++.|+..|..+
T Consensus 446 ekl~~e~~t~~~s------------~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r 500 (1195)
T KOG4643|consen 446 EKLLEETSTVTRS------------LSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNR 500 (1195)
T ss_pred HHHHHHHHHHHHh------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433322222221 111222333333332 23445666777777777766654
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.26 E-value=0.00043 Score=82.05 Aligned_cols=94 Identities=18% Similarity=0.164 Sum_probs=63.5
Q ss_pred HHHHHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 800 SLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDL 879 (1035)
Q Consensus 800 ~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el 879 (1035)
+..+++...-..|..|..+|.+++.+- ......+.|.+..|. ...-.-+..+..++.+|..+.+.+..+
T Consensus 293 ~~rEEl~~~R~~i~~Lr~klselE~~n--------~~L~~~I~dL~~ql~---e~~r~~e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 293 YAREELRRIRSRISGLRAKLSELESRN--------SALEKRIEDLEYQLD---EDQRSFEQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred HHHHHHHHHHhcccchhhhhccccccC--------hhHHHHHHHHHhhhh---hhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 333444445566778888888886432 234456667777763 333444557888999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 880 VALLKQSEAQRKELVKQQRMREQAV 904 (1035)
Q Consensus 880 ~~~l~~~~~~~~~l~~~~~~~e~~~ 904 (1035)
.-++..|=--..-|..|+.-|...+
T Consensus 362 ~~Elq~LlD~ki~Ld~EI~~YRkLL 386 (546)
T KOG0977|consen 362 SVELQKLLDTKISLDAEIAAYRKLL 386 (546)
T ss_pred HHHHHHhhchHhHHHhHHHHHHHHh
Confidence 8888777666666777777776554
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.23 E-value=0.019 Score=65.22 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~ 612 (1035)
|-+++..||.++..|+.+...+.. ........++..|+..+.+|..+|.++..+ +.+.+-++.
T Consensus 16 YIekVr~LE~~N~~Le~~i~~~~~-------~~~~~~~~~~~~ye~el~~lr~~id~~~~e----------ka~l~~e~~ 78 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESEIEELRE-------KKGEEVSRIKEMYEEELRELRRQIDDLSKE----------KARLELEID 78 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHCHHHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHh-------cccccCcccccchhhHHHHhHHhhhhHHHH----------hhHHhhhhh
Confidence 455666666666665544444433 323455678889999999998777776643 345555566
Q ss_pred HHHHHHHHHHHHHHH
Q 001664 613 RLQAEIQSIKAQKVQ 627 (1035)
Q Consensus 613 ~L~~ei~~mK~~kv~ 627 (1035)
.+..++.+++.....
T Consensus 79 ~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 79 NLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 666666665554443
No 47
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.21 E-value=0.014 Score=78.01 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001664 535 KKIMELEEEKRIVQQERD 552 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd 552 (1035)
..+..|+.++..+++.++
T Consensus 191 ~~~~~L~~q~~~l~~~~e 208 (1164)
T TIGR02169 191 LIIDEKRQQLERLRRERE 208 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666665554
No 48
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.21 E-value=0.013 Score=78.03 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.6
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
++.-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4467899999999888
No 49
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=0.09 Score=71.13 Aligned_cols=51 Identities=18% Similarity=0.099 Sum_probs=34.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 650 LLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARK 700 (1035)
Q Consensus 650 i~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k 700 (1035)
+..+++.+.....++..+...++.....++.++.++..........+...+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~ 446 (1311)
T TIGR00606 396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKK 446 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666667777777777777777777777777777776666655555443
No 50
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.18 E-value=0.085 Score=70.33 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=19.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Q 001664 494 ALWQNTMDKELNELNKRLEQKESEMKLFG 522 (1035)
Q Consensus 494 ~~~q~~l~~El~eL~kqLe~kE~~~k~~~ 522 (1035)
...-..|..+++.|.+.+..+...+..+.
T Consensus 804 e~~i~eL~~el~~lk~klq~~~~~~r~l~ 832 (1822)
T KOG4674|consen 804 ESRIKELERELQKLKKKLQEKSSDLRELT 832 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677788888888777776665543
No 51
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.18 E-value=2.7e-08 Score=120.67 Aligned_cols=257 Identities=23% Similarity=0.285 Sum_probs=153.7
Q ss_pred CCCCCCCceEEEEEeCCCCCchhc---------cCCceEEEEeCCC-ceeeecCeeEEeceEeCCCCCCCcccccccchh
Q 001664 2 DTASENCSVKVAVHVRPLIGDERA---------QGCKECVAVTHGN-PQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (1035)
Q Consensus 2 ~~~~~~~~VkV~vRvRP~~~~E~~---------~~~~~~v~v~~~~-~~v~~~~~~F~FD~VF~~~~s~q~~vy~~~v~p 71 (1035)
++-++.+.++|+|+|+|....... .....-..+..+. ..+......|.||.+|..... ...++.. ...
T Consensus 299 ~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~-~~~ 376 (568)
T COG5059 299 DSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEI-EILVFRE-QSQ 376 (568)
T ss_pred HhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhh-hhHHHHH-HHh
Confidence 345667799999999999854210 0010000111111 122223367999999987644 4444433 566
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcc-cceEEEEeehhhhhhhHHhhhcC
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLD 150 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~V~vS~~EIYnE~v~DLL~ 150 (1035)
+++.-+.| +++||++++|+++|| .....++.+-.+...|..+..... .+.+...+-|+++|-....+++.
T Consensus 377 ~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (568)
T COG5059 377 LSQSSLSG----IFAYMQSLKKETETL-----KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLRE 447 (568)
T ss_pred hhhhhhhh----HHHHHhhhhhhhhcc-----cchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777 999999999999999 334456767777888887765433 24455666677777333333332
Q ss_pred CcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEE
Q 001664 151 SVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (1035)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 230 (1035)
....... ..-.. ...++.+. +.-++ .......+.... ......+..+.+..|..++++|.+|
T Consensus 448 e~~~~~~-~~~~~----------~~~~~~~~-----~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~ 509 (568)
T COG5059 448 EELSKKK-TKIHK----------LNKLRHDL-----SSLLS-SIPEETSDRVES-EKASKLRSSASTKLNLRSSRSHSKF 509 (568)
T ss_pred HhcCChH-HHHHH----------HHHHHHHH-----HHhhh-hcchhhhhhhhh-hhhccchhhcccchhhhhcccchhh
Confidence 2110000 00000 00000000 00000 000111111111 1567788899999999999999999
Q ss_pred EEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhHHHhHhhHHHHHHHHHhh
Q 001664 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305 (1035)
Q Consensus 231 tI~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~kE~~~IN~SL~aLg~VI~aL~ 305 (1035)
+......... ....+ ++.|||||+||. -+.+.|.++++..++|++|..+|.+|.++.
T Consensus 510 ~~~~~~~~~~---------------~~~~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 510 RDHLNGSNSS---------------TKELS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhcccchhhh---------------hHHHH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 8765321100 00111 799999999999 889999999999999999999999998874
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.16 E-value=0.041 Score=65.73 Aligned_cols=162 Identities=21% Similarity=0.346 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHH
Q 001664 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (1035)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e 577 (1035)
..|.+++..|..+++.++.++.... ..... +..+..++......+..|++.|..+... .+
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~-ee~e~----L~~~~kel~~~~e~l~~E~~~L~~q~~e---------------~~ 219 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEE-EEMEQ----LKQQQKELTESSEELKEERESLKEQLAE---------------AR 219 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH
Confidence 3455555555555555554443322 01111 1223334444444555555555544432 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 001664 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFR---QWKASREKELLKLK 654 (1035)
Q Consensus 578 ~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r---~~~~~~~kEi~qLk 654 (1035)
.++.+||.+|..|..+..+..++. ..++.+..+...++ .+|..++++...+.+ ........|+..|+
T Consensus 220 ~ri~~LEedi~~l~qk~~E~e~~~-------~~lk~~~~elEq~~---~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~Lk 289 (546)
T PF07888_consen 220 QRIRELEEDIKTLTQKEKEQEKEL-------DKLKELKAELEQLE---AELKQRLKETVVQLKQEETQAQQLQQENEALK 289 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 677888888887776653322211 11222222222222 122222222222211 11223445555566
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 655 KEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLK 693 (1035)
Q Consensus 655 ~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLk 693 (1035)
+++|..+..+..- +++...|.+...++.+...+.-
T Consensus 290 eqLr~~qe~lqaS----qq~~~~L~~EL~~~~~~RDrt~ 324 (546)
T PF07888_consen 290 EQLRSAQEQLQAS----QQEAELLRKELSDAVNVRDRTM 324 (546)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665544333 2344456666666665554443
No 53
>PRK03918 chromosome segregation protein; Provisional
Probab=98.12 E-value=0.091 Score=68.32 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=6.1
Q ss_pred cCCHHHHHHHHHh
Q 001664 195 VNTLQEMAACLEQ 207 (1035)
Q Consensus 195 V~s~~e~~~ll~~ 207 (1035)
..+..++...+..
T Consensus 107 ~~~~~~~~~~i~~ 119 (880)
T PRK03918 107 EEGDSSVREWVER 119 (880)
T ss_pred cccHHHHHHHHHH
Confidence 3444455555544
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.12 E-value=0.029 Score=68.63 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001664 633 KQEAEQFRQWKASREKELLKLKKE--GRKNEFERHKLEALNQRQ-KMVLQRKTEEAAIATKRLKELLE 697 (1035)
Q Consensus 633 kee~~~~r~~~~~~~kEi~qLk~~--~rK~e~ei~~L~~~~~~q-~~vL~rK~eE~~a~~krLke~le 697 (1035)
|.|.+....|+.....|+..+-.- +---+.||..-.++.-.+ .-.|+.+++|+..-..=||...+
T Consensus 289 R~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 289 RKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666776666666554432 122222333222222222 22477788888777777776655
No 55
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.10 E-value=0.031 Score=74.66 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=5.3
Q ss_pred CCCChhhhhhh
Q 001664 318 YRDSKLTRLLQ 328 (1035)
Q Consensus 318 yRdSkLTrLLq 328 (1035)
+|.+++..++.
T Consensus 55 ~r~~~~~~~i~ 65 (1179)
T TIGR02168 55 LRGGKMEDVIF 65 (1179)
T ss_pred hhhccchhhhc
Confidence 34455554444
No 56
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.04 E-value=0.1 Score=69.77 Aligned_cols=59 Identities=27% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 841 MGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRM 899 (1035)
Q Consensus 841 ~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~ 899 (1035)
+.+.+..+..|.......+..+.+++..+..++..+..+...+.....+...|....+.
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555555555555555555555555555555555555555555555554444433
No 57
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.99 E-value=0.1 Score=64.20 Aligned_cols=44 Identities=39% Similarity=0.427 Sum_probs=35.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 652 KLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1035)
Q Consensus 652 qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~ 699 (1035)
.|-+++.++..|+..|. +++-.|+|+++++.+.+..|+|.+++-
T Consensus 400 K~~kelE~k~sE~~eL~----r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELR----RQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37777777777777775 466779999999999999999998864
No 58
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.12 Score=64.32 Aligned_cols=228 Identities=19% Similarity=0.288 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HhhccccHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh
Q 001664 498 NTMDKELNELNKRLEQKESEM---KLFGDIDTEA--LRHH-FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQK 571 (1035)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~---k~~~~~d~~~--~k~~-ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~K 571 (1035)
.+.+..+..|+..|..+|++- .+++..|..- +.-. |+..+.+...++..|+..+-...+.-.+....-+ ...-
T Consensus 187 ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~-~~~d 265 (1200)
T KOG0964|consen 187 EKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALD-KVED 265 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHH-HHHH
Confidence 455666677777776666543 3333233221 1111 5666655555555554433222222111100000 0011
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 572 MQDGHTLKLKALEAQILELKKKQ----ESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASRE 647 (1035)
Q Consensus 572 Lke~~e~kL~eLE~el~~Lkkk~----~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~ 647 (1035)
-.++....+.+|+..|..|+.+. .+..++.+.|-+++-+++.|+++|..=+.++.. ..
T Consensus 266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~------------------~l 327 (1200)
T KOG0964|consen 266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNL------------------AL 327 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhh------------------HH
Confidence 11233445555565555554311 224455666666777777777766655555544 44
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHH
Q 001664 648 KELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQK 727 (1035)
Q Consensus 648 kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~ 727 (1035)
..+..++.+...++.|+.+.+-.++.+..--.+-...++....+.++.+.++ .+ .+...+.+....
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq----------gr----~sqFssk~eRDk 393 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ----------GR----YSQFSSKEERDK 393 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh----------cc----ccccCcHHHHHH
Confidence 4455566777777777777766555544333333333333444444444432 11 123345677899
Q ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 728 WLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQ 765 (1035)
Q Consensus 728 Wl~~ElE~~~-~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1035)
|+..|++-+. .+.+.... +..+..|+..++.
T Consensus 394 wir~ei~~l~~~i~~~ke~-------e~~lq~e~~~~e~ 425 (1200)
T KOG0964|consen 394 WIRSEIEKLKRGINDTKEQ-------ENILQKEIEDLES 425 (1200)
T ss_pred HHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHH
Confidence 9999999884 44444444 3444445544443
No 59
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.91 E-value=0.16 Score=63.84 Aligned_cols=153 Identities=24% Similarity=0.353 Sum_probs=78.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhH
Q 001664 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (1035)
Q Consensus 497 q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ 576 (1035)
...+..|+.++...++.++..+..+. .+|..|++.++.=.++.+.+...+.. .... .+...+...+
T Consensus 373 ~~~~~~Ei~~l~d~~d~~e~ki~~Lq------------~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~-~~~~~~~~~l 438 (775)
T PF10174_consen 373 KSRLQGEIEDLRDMLDKKERKINVLQ------------KKIENLEEQLREKDRQLDEEKERLSS-QADS-SNEDEALETL 438 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhc-cccc-cchHHHHHHH
Confidence 34456677778878888777766655 55666666665544444555555543 2222 2334555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 001664 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI----------KQEAEQFRQWKASR 646 (1035)
Q Consensus 577 e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkm----------kee~~~~r~~~~~~ 646 (1035)
+.-+.+.+..+..|.... .... ......+..++.++.+++.....|.+.+ +++...........
T Consensus 439 Eea~~eker~~e~l~e~r-~~~e-----~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~ 512 (775)
T PF10174_consen 439 EEALREKERLQERLEEQR-ERAE-----KERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKK 512 (775)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchh
Confidence 777777776666665221 1111 1111233455555555555555444433 34444444444444
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Q 001664 647 EKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 647 ~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
.-+|-+|.-.+.+...++.+|+.
T Consensus 513 ~s~i~~l~I~lEk~rek~~kl~~ 535 (775)
T PF10174_consen 513 DSEIERLEIELEKKREKHEKLEK 535 (775)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHH
Confidence 44444444444444444444444
No 60
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.90 E-value=0.12 Score=61.84 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQK--MQDGHTLKLKALEAQILELKKKQESQVELLK 602 (1035)
Q Consensus 528 ~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~K--Lke~~e~kL~eLE~el~~Lkkk~~~~~~l~k 602 (1035)
.++..|-..+..||.++..+-+|||.|..++.++..+-...+.+ |++. -..|..|-.+=..|-|++-.+..+.|
T Consensus 402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEk-dE~I~~lm~EGEkLSK~ql~qs~iIk 477 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEK-DEIINQLMAEGEKLSKKQLAQSAIIK 477 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46677999999999999999999999999988763221111211 2221 23455555555556555555554444
No 61
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.84 E-value=0.2 Score=62.58 Aligned_cols=145 Identities=18% Similarity=0.154 Sum_probs=97.4
Q ss_pred HHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCCCCCCCcccccCChHHHHHHH-HHHHH
Q 001664 726 QKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERI-ASLEN 803 (1035)
Q Consensus 726 ~~Wl~~ElE~~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i-~~Le~ 803 (1035)
.+-|.-+.|++ .++.+....+..+..+-+.+-.|..+|...... .+- .+=+.
T Consensus 410 ~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t--------------------------~~~s~~rq~ 463 (1195)
T KOG4643|consen 410 HKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST--------------------------VTRSLSRQS 463 (1195)
T ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHhHHHHH
Confidence 34588888888 578888888888777788888888877652111 110 11122
Q ss_pred HHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 804 MLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALL 883 (1035)
Q Consensus 804 ~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l 883 (1035)
..+...+++..+.+|+...-+..++. .-+.-.++.++.-.+..|......-+.+.+....++..+..++.+|...+
T Consensus 464 ~e~e~~~q~ls~~~Q~~~et~el~~~----iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l 539 (1195)
T KOG4643|consen 464 LENEELDQLLSLQDQLEAETEELLNQ----IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELL 539 (1195)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456666666666543333221 11334566777888888888888888899999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001664 884 KQSEAQRKELVKQQRMR 900 (1035)
Q Consensus 884 ~~~~~~~~~l~~~~~~~ 900 (1035)
..++.+..-|..+....
T Consensus 540 ~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 540 GNLEEENAHLLKQIQSL 556 (1195)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 88888888777665554
No 62
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.75 E-value=0.32 Score=62.20 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAA------NSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHK 606 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~------~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k 606 (1035)
+++++.+.++++++|..+...+.+++..+.. ...+++.+++.+.+....++..++++.++-.....++.+.-..
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~ 578 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQ 578 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHH
Confidence 5566666666666666666666666655421 1233444555555555556666666655555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 607 SDEAAKRLQAEIQSIKAQK---VQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1035)
Q Consensus 607 ~e~~~~~L~~ei~~mK~~k---v~L~kkmkee~~~~r~~~~~~~kEi~qLk~~ 656 (1035)
.......+.+-+..++..+ .++-++++.+++..+.......-++..|+.+
T Consensus 579 ~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~ 631 (1317)
T KOG0612|consen 579 ELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEE 631 (1317)
T ss_pred HhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5554445554444444433 3345566666666666555555555554443
No 63
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.73 E-value=0.3 Score=61.56 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 596 SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 596 ~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
....+.|.-++++..+..|+..+.-....+-.+++.|...-......|.. +-+++-++.++..|+..+++
T Consensus 239 ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k----~d~~~~eL~rk~~E~~~~qt 308 (775)
T PF10174_consen 239 KIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSK----MDRLKLELSRKKSELEALQT 308 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455666666666555544444433 66677777777777777766
No 64
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.68 E-value=0.55 Score=63.10 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.0
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
|-+--+|-.|+|||+.|
T Consensus 18 G~t~i~GTNG~GKTTlL 34 (1201)
T PF12128_consen 18 GHTHICGTNGVGKTTLL 34 (1201)
T ss_pred CceeeecCCCCcHHHHH
Confidence 44556799999999998
No 65
>PRK01156 chromosome segregation protein; Provisional
Probab=97.67 E-value=0.46 Score=62.03 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.4
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999875
No 66
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.60 E-value=0.35 Score=58.83 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 001664 377 ISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (1035)
Q Consensus 377 ~~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~~~E~ 440 (1035)
....+..++.+|..||..+... +.+.+.|...++.++....+-.-+|++..+++...+.
T Consensus 97 lEddlk~~~sQiriLQn~c~~l-----E~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRL-----EMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456677778888888777665 5666777777777666555555566666665544443
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.59 E-value=0.014 Score=72.72 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001664 677 VLQRKTEEAAIATKRLKELLEARKSSAREN 706 (1035)
Q Consensus 677 vL~rK~eE~~a~~krLke~le~~k~~~~~~ 706 (1035)
.|-||+.|-..+...+...|..+|.++.+.
T Consensus 492 ~LEkrL~eE~~~R~~lEkQL~eErk~r~~e 521 (697)
T PF09726_consen 492 QLEKRLAEERRQRASLEKQLQEERKARKEE 521 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 355666666666666666666555555443
No 68
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.46 Score=59.58 Aligned_cols=128 Identities=23% Similarity=0.318 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001664 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L 614 (1035)
.++.+.+.+++..++|.+.+..+|+.++.. ..+-..|+.+++-++.+|- +..=+..+.++.++..........+..+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~-~~kf~~l~~ql~l~~~~l~--l~~~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEAQ-SQKFRDLKQQLELKLHELA--LLEKRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHhcChHhhHHHHHHHHHHHHHHH
Confidence 568888999999999999999999988533 2345566666666666554 2222355566667777767777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 001664 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERH 665 (1035)
Q Consensus 615 ~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~ 665 (1035)
+.+|.+.....-+-+-+++.=-.....|+..+++++..|.++.......+.
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e 804 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAE 804 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 777766654444444444444455567777888888777776665554433
No 69
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.53 Score=60.05 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001664 745 KYEKQSQVQAALADELTIL 763 (1035)
Q Consensus 745 ~~e~l~e~R~~l~~El~~L 763 (1035)
.++...+...+++++|+-+
T Consensus 473 ~t~~~~~e~~~~ekel~~~ 491 (1293)
T KOG0996|consen 473 ETEGIREEIEKLEKELMPL 491 (1293)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 70
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.46 E-value=0.48 Score=56.93 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=75.6
Q ss_pred HHHHHHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHH-HH-------------HH---
Q 001664 799 ASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAE-TR-------------FQ--- 861 (1035)
Q Consensus 799 ~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~-~r-------------~~--- 861 (1035)
+++.+.+..+..+|.++..++.....-.. .-+.+.+.-.+-+|.|..|..|-.+--. +. ..
T Consensus 306 ~S~~~e~e~~~~qI~~le~~l~~~~~~le--el~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~ 383 (629)
T KOG0963|consen 306 ASLVEEREKHKAQISALEKELKAKISELE--ELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLE 383 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHH
Confidence 44455555555555555555444321110 0133445556677777777666543211 11 11
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccCCCcccccccccccCCCCCCcccC
Q 001664 862 -LWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMRE---QAVTIALASSASGSSWRSSKHFADDMSGPLSPVSLP 937 (1035)
Q Consensus 862 -~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1035)
.+.++.++-.|+.....+..++.++...-.++....-+-. .++..=|..... +.-...+.+...+.++-+++
T Consensus 384 knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~----~~~~~~~~~~~~~~~~~~v~ 459 (629)
T KOG0963|consen 384 KNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQV----SPPAEGATARREEGSGQPVP 459 (629)
T ss_pred HHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhccc----CCCCCcchhhhcccCCcCCC
Confidence 2223344444444444455544455544444433322222 222333333221 11122344445566788889
Q ss_pred CccccccccccccCcccch
Q 001664 938 APKQLKFTPGIVNGSVRES 956 (1035)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~ 956 (1035)
.+...+++|-..++.+-.+
T Consensus 460 e~s~~~~~p~~~~~~~~s~ 478 (629)
T KOG0963|consen 460 ESSIMGGGPSLPNGGVLSR 478 (629)
T ss_pred cccccCCCCCccccccccc
Confidence 9999999998888877655
No 71
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.40 E-value=1.2 Score=60.29 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 001664 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL------QNKIKQEAEQFRQWKASREKEL 650 (1035)
Q Consensus 577 e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L------~kkmkee~~~~r~~~~~~~kEi 650 (1035)
+..+..++.++..|+.+ ..++.......+.++..++..+..+...+.-. ...+......|.......+.++
T Consensus 382 eeEleelEeeLeeLqeq---Laelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL 458 (1486)
T PRK04863 382 EARAEAAEEEVDELKSQ---LADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEL 458 (1486)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544433 33444555555666666666666666555443 2455555555555555555555
Q ss_pred HHHHHHhhhhHHHHHH
Q 001664 651 LKLKKEGRKNEFERHK 666 (1035)
Q Consensus 651 ~qLk~~~rK~e~ei~~ 666 (1035)
..|+.++...+..+..
T Consensus 459 ~elE~kL~~lea~leq 474 (1486)
T PRK04863 459 LSLEQKLSVAQAAHSQ 474 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555444444433
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.37 E-value=0.043 Score=68.45 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 001664 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMV---LQRKTEEAAIATKRLKELLEARKSSARENSVNS 710 (1035)
Q Consensus 634 ee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~v---L~rK~eE~~a~~krLke~le~~k~~~~~~e~~~ 710 (1035)
+-.+..|..+...|.|+.+|+.+++.++.++..|+.+-+..... =...+|.+.+++.-++| -....|...
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd-------k~~~LE~sL 610 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD-------KNQHLENSL 610 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHhh
Confidence 34455677778888899999999999999988888754221111 01123333333332222 112222211
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001664 711 TGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (1035)
Q Consensus 711 ~~~~~~~~~~~~~~~~~Wl~~ElE~~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~ 766 (1035)
++ ..||- |+....+.|+++.+|-......+.+.|+..||..
T Consensus 611 sa-------------EtriK--ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 611 SA-------------ETRIK--LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred hH-------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11222 3445688999999999999999999999999974
No 73
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.36 E-value=0.38 Score=57.79 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHhHHH
Q 001664 795 MERIASLENMLNMSSKALVEMASQLSEA 822 (1035)
Q Consensus 795 ~~~i~~Le~~~~~~~~~i~~l~~ql~~~ 822 (1035)
.+++++|+..-......|.+|..|+++-
T Consensus 309 r~klselE~~n~~L~~~I~dL~~ql~e~ 336 (546)
T KOG0977|consen 309 RAKLSELESRNSALEKRIEDLEYQLDED 336 (546)
T ss_pred hhhhccccccChhHHHHHHHHHhhhhhh
Confidence 3444555555444555555666665553
No 74
>PRK11637 AmiB activator; Provisional
Probab=97.36 E-value=0.15 Score=60.70 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001664 628 LQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQR 680 (1035)
Q Consensus 628 L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~r 680 (1035)
+...+..+.......+..+..++.+|+.+....+.++.+|+.+.++....+.+
T Consensus 199 ~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 199 LLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555566666777777777777777776655555444443
No 75
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.52 Score=57.38 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=12.8
Q ss_pred cccchhHHHHHHHHHHHh
Q 001664 107 QTGLIPQVMNALFNKIET 124 (1035)
Q Consensus 107 ~~Giipr~~~~LF~~i~~ 124 (1035)
..|+-+.++..|+..-+-
T Consensus 43 qS~LP~~VLaqIWALsDl 60 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWALSDL 60 (1118)
T ss_pred hcCCChHHHHHHHHhhhc
Confidence 357888888888865543
No 76
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.32 E-value=1 Score=57.48 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 725 LQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1035)
Q Consensus 725 ~~~Wl~~ElE~~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1035)
+..-++.+++.+ ..+.+....+-.+...|...+..|..++.
T Consensus 655 ~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~ 696 (1074)
T KOG0250|consen 655 DEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEK 696 (1074)
T ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677666 35555555555555556666666666554
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.31 E-value=1.5 Score=59.41 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=13.6
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
++.-+|++|||||.+|
T Consensus 29 ~~~l~G~NGaGKSTll 44 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTM 44 (1486)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4556799999999998
No 78
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.21 E-value=0.98 Score=55.17 Aligned_cols=304 Identities=19% Similarity=0.185 Sum_probs=172.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 572 MQDGHTLKLKALEAQILELKKKQESQVELL--------------KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAE 637 (1035)
Q Consensus 572 Lke~~e~kL~eLE~el~~Lkkk~~~~~~l~--------------k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~ 637 (1035)
.+++|..-+.+|..--.+|.+-+.+...+. ..-.-...++..|..||..+|......--.--+-.+
T Consensus 121 ~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAee 200 (522)
T PF05701_consen 121 AREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEE 200 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666554444444444433332 233344566777888888887777664222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCC
Q 001664 638 QFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPT 717 (1035)
Q Consensus 638 ~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~~~~~~~~~~ 717 (1035)
+.......++.+...++..+...+.++..|..+. -....|..+...+.+.+..|+..|..-+......+....+ ..
T Consensus 201 e~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~---~~ 276 (522)
T PF05701_consen 201 ERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKE---KS 276 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhh---hh
Confidence 3333444566666777777777778788887755 4444566777777777777777776655422221110000 00
Q ss_pred CCCchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCCCCCCCcccccCChHHHHH
Q 001664 718 GQSNEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARME 796 (1035)
Q Consensus 718 ~~~~~~~~~~Wl~~ElE~~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~ 796 (1035)
. .-...-.=+..||+-. ..|..+......+...=..|..||.+.+.
T Consensus 277 ~--~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~------------------------------- 323 (522)
T PF05701_consen 277 S--ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKE------------------------------- 323 (522)
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 0 0001111234444444 34444444444444444444444444433
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 797 RIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQL 876 (1035)
Q Consensus 797 ~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~ 876 (1035)
.+..+.+.....+..+..|..+|..+..+..+..... -..-..+.+....|+.+...+..++........++..++..+
T Consensus 324 el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e-~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~ 402 (522)
T PF05701_consen 324 ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE-EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEA 402 (522)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333433444444444444444444433222211111 011135677888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001664 877 NDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (1035)
Q Consensus 877 ~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 913 (1035)
......+...+.++.-...+.......-+.+|.....
T Consensus 403 e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~ 439 (522)
T PF05701_consen 403 EQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKA 439 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888888887777776666666665443
No 79
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.20 E-value=0.33 Score=54.13 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 001664 406 EVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (1035)
Q Consensus 406 e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~~~E~ 440 (1035)
....|..++..|.+++..|..++..++.++..+..
T Consensus 21 t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~ 55 (310)
T PF09755_consen 21 TREQLRKRIESLQQENRVLKRELETEKARCKHLQE 55 (310)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888888887776544
No 80
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.17 E-value=1.4 Score=56.06 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 353 SLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYR 432 (1035)
Q Consensus 353 Tl~TL~fa~rar~IknkPvvN~d~~~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~e~~~L~~eL~e~r 432 (1035)
+..|=+|-.+|+.|+--+++- ...+.+..|.+.|...+.-|... +++..++ +.|....+.|+++|...+
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g--ay~s~f~~me~kl~~ir~il~~~--svs~~~i-------~~l~~~~~~lr~~l~~~~ 1245 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG--AYASRFLDMEEKLEEIRAILSAP--SVSAEDI-------AQLASATESLRRQLQALT 1245 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch--hhHhHHHHHHHHHHHHHHHhcCC--CccHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 567888999999999888764 56677777787777777766433 2333443 334444555666666666
Q ss_pred HhHHHHHhcccc
Q 001664 433 SRRAVVEHCGTD 444 (1035)
Q Consensus 433 ~r~~~~E~~~~~ 444 (1035)
+++...|....+
T Consensus 1246 e~L~~~E~~Lsd 1257 (1758)
T KOG0994|consen 1246 EDLPQEEETLSD 1257 (1758)
T ss_pred hhhhhhhhhhhh
Confidence 666666555443
No 81
>PRK11637 AmiB activator; Provisional
Probab=97.09 E-value=0.26 Score=58.72 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=17.9
Q ss_pred chhhccCCCCcceeeeccccceeeeee-ecccCcchhhhhhh
Q 001664 975 KKLATVGQPGKLWRWKRSHHQWLLQFK-WKWQKPWKLSEWIK 1015 (1035)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1015 (1035)
-.|+.+|.+|- ....| |+|. |+.-+|-....|++
T Consensus 393 ~~ig~~g~~g~----~~~~~---l~fei~~~~~~vnP~~~l~ 427 (428)
T PRK11637 393 QPIALVGSSGG----QGRPS---LYFEIRRQGQAVNPQPWLG 427 (428)
T ss_pred CeEEeecCCCC----CCCCe---EEEEEEECCEEeChHHHhC
Confidence 34667787772 22122 4444 34445666667764
No 82
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=1.3 Score=52.95 Aligned_cols=152 Identities=20% Similarity=0.169 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAA 686 (1035)
Q Consensus 607 ~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~ 686 (1035)
.|.++..|+.++.+||.+- .++.===+|.++....+....|+|..+..+..+-..++-.+..+.+...--+..+.-+..
T Consensus 306 kEeE~e~lq~~~d~Lk~~I-e~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~ 384 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQI-ELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLN 384 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665543 222111234455555566677788888888888888888888777777778888888888
Q ss_pred HHHHHHHHH-HHHHhhhhhhhccccCCCCCCC-CCCchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 687 IATKRLKEL-LEARKSSARENSVNSTGYTTPT-GQSNEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTIL 763 (1035)
Q Consensus 687 a~~krLke~-le~~k~~~~~~e~~~~~~~~~~-~~~~~~~~~~Wl~~ElE~~-~~~~e~~~~~e~l~e~R~~l~~El~~L 763 (1035)
.++.+|+=. .+..+. -.+....+++ +..-...+.--+...+.-+ ..++++...+..+++.+..++.-++.+
T Consensus 385 ~l~~~i~l~~~~~~~n------~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~ 458 (581)
T KOG0995|consen 385 SLIRRIKLGIAENSKN------LERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEK 458 (581)
T ss_pred HHHHHHHHHHHHHhcc------CCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888654 222111 0011101111 1111222333333333333 356677777777777776666666555
Q ss_pred Hh
Q 001664 764 KQ 765 (1035)
Q Consensus 764 k~ 765 (1035)
++
T Consensus 459 ~~ 460 (581)
T KOG0995|consen 459 IQ 460 (581)
T ss_pred HH
Confidence 44
No 83
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=1.8 Score=53.03 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCCCCCCCcccccCChHHHHHHHHHHHHHHhhchHHHHHHH
Q 001664 737 ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMA 816 (1035)
Q Consensus 737 ~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~~~i~~l~ 816 (1035)
.++-|....+.++.-++..++..+..... + ... ...+...|+..+......+..+.
T Consensus 493 arikE~q~kl~~l~~Ekq~l~~qlkq~q~----a-----------------~~~---~~~~~s~L~aa~~~ke~irq~ik 548 (1118)
T KOG1029|consen 493 ARIKELQEKLQKLAPEKQELNHQLKQKQS----A-----------------HKE---TTQRKSELEAARRKKELIRQAIK 548 (1118)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhh----h-----------------ccC---cchHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777766543322 1 111 12233556555555555566777
Q ss_pred HHhHHHHH
Q 001664 817 SQLSEAEE 824 (1035)
Q Consensus 817 ~ql~~~e~ 824 (1035)
+|+++++.
T Consensus 549 dqldelsk 556 (1118)
T KOG1029|consen 549 DQLDELSK 556 (1118)
T ss_pred HHHHHHHH
Confidence 78888753
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.80 E-value=1.4 Score=50.10 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=26.8
Q ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 729 LEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1035)
Q Consensus 729 l~~ElE~~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1035)
+..|+.-+ ..+......|..|+...-.|..|++..|+
T Consensus 267 le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 267 LEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44455544 46667777788888888888888888776
No 85
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.79 E-value=1.4 Score=54.28 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=12.3
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
+..+-+|++|||||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34456788999998765
No 86
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.74 E-value=2.2 Score=51.60 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 001664 640 RQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSV 708 (1035)
Q Consensus 640 r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~ 708 (1035)
+.......+|...++.+....+-++.+|+..-++++..+.-..++.-..++-.+..++.+++.+-..++
T Consensus 724 ~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~~ll~ve~~~k~~e~~~~~~~~ler 792 (961)
T KOG4673|consen 724 RNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQEVLLHVELIQKDLEREKASRLDLER 792 (961)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhCHHHHhhccc
Confidence 333344555555666666666666666666666666666666666666667777777777777766555
No 87
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.72 E-value=0.54 Score=51.44 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~ 612 (1035)
.+.++..++..+..|+.+.+.+...|..++.. ..+...-.+.|+.+|..|+.++.. ....-....+.-.+++..+.
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~-~~~~~~re~~~e~~i~~L~~~lke---aE~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVGNNLKSLEAS-EEKASEREDEYEEKIRDLEEKLKE---AENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777766422 223344456777778888744433 33444445556666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001664 613 RLQAEIQSIKAQKVQLQNKI 632 (1035)
Q Consensus 613 ~L~~ei~~mK~~kv~L~kkm 632 (1035)
.|.++|...|.....+.+-|
T Consensus 208 ~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 208 RLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666644333
No 88
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.61 E-value=4 Score=53.78 Aligned_cols=36 Identities=8% Similarity=0.250 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001664 666 KLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKS 701 (1035)
Q Consensus 666 ~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~ 701 (1035)
.++...+.|...++.+++.+.+.+..|++.+-.+|.
T Consensus 201 ~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~ 236 (1109)
T PRK10929 201 NRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQ 236 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466667777777888777777777777765443
No 89
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=2.3 Score=50.18 Aligned_cols=161 Identities=17% Similarity=0.282 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----ccc-----
Q 001664 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRH--HFGKKIMELEEEKRIVQQERDRLLAEIENLAA-----NSD----- 566 (1035)
Q Consensus 499 ~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~--~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~-----~~~----- 566 (1035)
.+..|+.-|.+.|++--++.-....+....+++ .+..++.+|+.+...+..|.|.+.+.+..... ..+
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E 91 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE 91 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 456677777777766544332222233344433 36677888888888888888888887766410 001
Q ss_pred -----ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 567 -----GHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (1035)
Q Consensus 567 -----~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~ 641 (1035)
+..+| .+.|-.++-+||.+|..++....+ ......+.+....++.+.=+....+ -.+||.|.+.++-
T Consensus 92 esLLqESaak-E~~yl~kI~eleneLKq~r~el~~---~q~E~erl~~~~sd~~e~~~~~E~q----R~rlr~elKe~Kf 163 (772)
T KOG0999|consen 92 ESLLQESAAK-EEYYLQKILELENELKQLRQELTN---VQEENERLEKVHSDLKESNAAVEDQ----RRRLRDELKEYKF 163 (772)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhcchhhHHH----HHHHHHHHHHHHH
Confidence 01111 345677888888666655533322 1111122222222222111111112 2345666665555
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001664 642 WKASREKELLKLKKEGRKNEFERHKL 667 (1035)
Q Consensus 642 ~~~~~~kEi~qLk~~~rK~e~ei~~L 667 (1035)
..+..-.|-..|.++.---+..+..|
T Consensus 164 RE~RllseYSELEEENIsLQKqVs~L 189 (772)
T KOG0999|consen 164 REARLLSEYSELEEENISLQKQVSNL 189 (772)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 55555555555555544444443333
No 90
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.56 E-value=1.4 Score=51.40 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001664 680 RKTEEAAIATKRLKEL 695 (1035)
Q Consensus 680 rK~eE~~a~~krLke~ 695 (1035)
++.+|+.+--.+|+..
T Consensus 224 ~~l~eL~~~~~~L~~~ 239 (420)
T COG4942 224 KKLEELRANESRLKNE 239 (420)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3333333333333333
No 91
>PRK01156 chromosome segregation protein; Provisional
Probab=96.54 E-value=4.7 Score=52.77 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 856 AETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMR 900 (1035)
Q Consensus 856 ~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~ 900 (1035)
...+.....++.++.++...+..+.+.+..+..+...+..++..+
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~ 721 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDI 721 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333344444555555566666666666666655544444444333
No 92
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.54 E-value=1.6 Score=53.67 Aligned_cols=125 Identities=21% Similarity=0.261 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHK------ 606 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k------ 606 (1035)
+.+++..+..+...++.+.+.+.+++.++.. -...|+..|+.++.++..++..........+.-..
T Consensus 218 l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~--------~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~ 289 (562)
T PHA02562 218 KQNKYDELVEEAKTIKAEIEELTDELLNLVM--------DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPT 289 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4455555555555555555556555555421 12345666777776666666555544443332211
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001664 607 -------SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHK 666 (1035)
Q Consensus 607 -------~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~ 666 (1035)
....+..|.+++.+++.+...+..++.+-....++ .....+++..++...+.....+..
T Consensus 290 C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 290 CTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred CCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14556666666666666666655444433333333 222344555555555444444433
No 93
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=4 Score=51.54 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=44.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-ccCCCCCCCCCCCCcccccCC--hHHHHHHHHHHHHHHhhchHHHH
Q 001664 737 ANVHEVRFKYEKQSQVQAALADELTILKQVDQL-SLNGHSPQRGKNGHSRLSSLS--PNARMERIASLENMLNMSSKALV 813 (1035)
Q Consensus 737 ~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~-~~~~~~~~~~~~~~~~~~~l~--~~~r~~~i~~Le~~~~~~~~~i~ 813 (1035)
..+...+-.++.+.+.-+.+...|+.|++.... -.+ ....+++.+-+ +.-...+|..|-.-|.....+..
T Consensus 342 ~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~K-------qgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~ 414 (1200)
T KOG0964|consen 342 DELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAK-------QGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQEN 414 (1200)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-------hccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 567777777888888777777778777653211 000 00011111111 22334556666666666666666
Q ss_pred HHHHHhHHHHH
Q 001664 814 EMASQLSEAEE 824 (1035)
Q Consensus 814 ~l~~ql~~~e~ 824 (1035)
.++..+.+++.
T Consensus 415 ~lq~e~~~~e~ 425 (1200)
T KOG0964|consen 415 ILQKEIEDLES 425 (1200)
T ss_pred HHHHHHHHHHH
Confidence 66666666643
No 94
>PRK11281 hypothetical protein; Provisional
Probab=96.49 E-value=4.2 Score=53.73 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 665 HKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1035)
Q Consensus 665 ~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~ 699 (1035)
..++...+.|...+..+++.....+..|++.+-.+
T Consensus 219 ~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k 253 (1113)
T PRK11281 219 TQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK 253 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777777888888888888888888777653
No 95
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.47 E-value=5.3 Score=52.53 Aligned_cols=377 Identities=20% Similarity=0.190 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHH
Q 001664 500 MDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLK 579 (1035)
Q Consensus 500 l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~k 579 (1035)
++.++.++.+.|+..+..+..+. ++..++..|+.+...+.++...+...+......++..+.++-..++++
T Consensus 242 ~e~e~~~~~~~i~ei~~~~~el~---------k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~ 312 (1294)
T KOG0962|consen 242 LENELGPIEAKIEEIEKSLKELE---------KLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEER 312 (1294)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHH
Confidence 34455555555555554443332 122444455555555555555555554433334444444444444444
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Q 001664 580 LKALEAQILELKKK----QESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ-------------------------- 629 (1035)
Q Consensus 580 L~eLE~el~~Lkkk----~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~-------------------------- 629 (1035)
+.+++..+.+++++ ..++..+...|.+++.....++.+....+..+.++-
T Consensus 313 ~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 392 (1294)
T KOG0962|consen 313 LEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKK 392 (1294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHH
Confidence 44444333333321 144566666777777777777777766655554431
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001664 630 ----------NKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEAL---NQR-QKMVLQRKTEEAAIATKRLKEL 695 (1035)
Q Consensus 630 ----------kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~---~~~-q~~vL~rK~eE~~a~~krLke~ 695 (1035)
.-+-.....+...-..++-.+..++...+++..++...... ... ....+..+.........+++..
T Consensus 393 ~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~k~l~~~~~~~e~s~~~~~~~ 472 (1294)
T KOG0962|consen 393 DFRNLILERFGGLEDDIKQRKKDIAELETNALDLIKEITDREVSLEAQKRIKDEIKKLESKGLKDKSFQYEDSTDDLKKL 472 (1294)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhHHHH
Confidence 11222333444444555556666777777777776555542 112 2234555666666666677777
Q ss_pred HHHHhhhhhhhccccCCCCCCCCCCc----------hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 696 LEARKSSARENSVNSTGYTTPTGQSN----------EKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1035)
Q Consensus 696 le~~k~~~~~~e~~~~~~~~~~~~~~----------~~~~~~Wl~~ElE~~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1035)
++..+.+.+..+........+..... -....+-++++++.+....+....++-+........+++.+.+.
T Consensus 473 ~~r~~~~~~~~~s~~~~~~~~~l~e~i~~~q~~~~~l~~~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~ 552 (1294)
T KOG0962|consen 473 DERLKEAERLLESAEKNNDELALKEKIAEKQNEMAQLEIQKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKS 552 (1294)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77655555444332211000000000 01123334445555544555555555555556666666666654
Q ss_pred hchhccCCCCCCCCCCCCcccccCChHHHHHHHHHHHHHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHH-H
Q 001664 766 VDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGD-A 844 (1035)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~e-A 844 (1035)
.... . ++......+..- .+++......+..+..|.+.+..+ ...++..+..+.....++.+ -
T Consensus 553 ~~~~-------~-----~~~~~~~~~~~~----~~le~~~~~~~~~~~~~~ek~~~l-~~~~~~~e~~~~~~~~~~e~~~ 615 (1294)
T KOG0962|consen 553 RLSD-------E-----KGRAIEFPLTND----RSLEKELHKLSKEIQEMEERLRML-QLEEQSLEINRNGIRKDLEDRK 615 (1294)
T ss_pred hcch-------h-----hhhhhccCccch----hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHH
Confidence 2211 0 111112221110 355556666666667777766666 34444444555555566653 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 845 KNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALA 909 (1035)
Q Consensus 845 k~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~~~ 909 (1035)
+-.++..-.. +...-.-+.++-..+..+...+......+.-|+--...|+..+-..-.
T Consensus 616 ~e~~k~~~~~-------lk~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~ 673 (1294)
T KOG0962|consen 616 EEELKSKEFF-------LKDESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACR 673 (1294)
T ss_pred HHHHHHHHHH-------HHhhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 2222222222 222222233333444444444444555555566666667777766665
No 96
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.29 E-value=0.52 Score=51.15 Aligned_cols=116 Identities=23% Similarity=0.255 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1035)
Q Consensus 577 e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~ 656 (1035)
+.....++.+|.+++.+...-...+ ...+.+.+...|+.|++..+...+.| ..+...........++++.-|+.+
T Consensus 58 e~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~l----e~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 58 ENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSL----EDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333322222 44455555666666666666665553 233333444444455555556666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 657 GRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1035)
Q Consensus 657 ~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le 697 (1035)
..+.+..+...+..-......+.++...+......|++.+.
T Consensus 133 ~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 133 LERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666666666555555555555555555555555555544
No 97
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.06 E-value=0.39 Score=52.03 Aligned_cols=164 Identities=26% Similarity=0.299 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 577 TLKLKALEAQILELKKKQES--------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREK 648 (1035)
Q Consensus 577 e~kL~eLE~el~~Lkkk~~~--------~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~k 648 (1035)
-++|++||.+++.|+++.+. .+-|.|.|+|.+..- .++..|| -|...+.+.-...+|
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek----~e~s~Lk-----------REnq~l~e~c~~lek 81 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEK----NEYSALK-----------RENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh----hhhhhhh-----------hhhhhHHHHHHHHHH
Confidence 47899999999999877655 234444454444332 2233333 333333333333444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCC-CCCc-hHHHH
Q 001664 649 ELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPT-GQSN-EKSLQ 726 (1035)
Q Consensus 649 Ei~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~~~~~~~~~~-~~~~-~~~~~ 726 (1035)
--..|--++.=++..+.-|+. |-+-.++.++-+...++|+|..||+-..+.......-...++|- .... ..-.+
T Consensus 82 ~rqKlshdlq~Ke~qv~~lEg----Ql~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q 157 (307)
T PF10481_consen 82 TRQKLSHDLQVKESQVNFLEG----QLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQ 157 (307)
T ss_pred HHHHhhHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhh
Confidence 444455555666666666654 45556778899999999999999965444332221111101110 0000 00000
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 727 KWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1035)
Q Consensus 727 ~Wl~~ElE~~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1035)
.. .-...+|.+..|..-.++|+.++.|+..|.-
T Consensus 158 ~~------~~sk~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 158 YY------SDSKYEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred hh------hhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 00 1134667788889999999999999999874
No 98
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.04 E-value=6 Score=48.95 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1035)
Q Consensus 725 ~~~Wl~~ElE~~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1035)
...+..+.+||+-.+.-.+....+-+.+-+.+-+|++.|..
T Consensus 486 Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 486 RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999988764
No 99
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.93 E-value=8.5 Score=49.79 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001664 840 FMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALAS 910 (1035)
Q Consensus 840 s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~~~~ 910 (1035)
++..+...|..+...+-....+..+.+.++.++...+.+|...+..+....+.+-.+....+..++.+=+.
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666777777777777666666666665555444445555444443
No 100
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.0049 Score=72.07 Aligned_cols=94 Identities=24% Similarity=0.448 Sum_probs=63.4
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchh----HHHHHHHHH
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIP----QVMNALFNK 121 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giip----r~~~~LF~~ 121 (1035)
..|..-.-|.|.+.|. .++..||+++-.|.-.-++ .|.|||||||||..=...-..|-+|- -....||+.
T Consensus 3 ~~F~l~s~f~PaGDQP-----~AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 3 KPFKLHSPFKPAGDQP-----EAIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CceEeccCCCCCCCcH-----HHHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHH
Confidence 3577778888877643 3467888888888766554 59999999999932111111122221 245677777
Q ss_pred HHhhcccceEEEEeehhhhhhhHH
Q 001664 122 IETLRHQMEFQLHVSFIEILKEEV 145 (1035)
Q Consensus 122 i~~~~~~~~~~V~vS~~EIYnE~v 145 (1035)
....-+...+...||||..|+-+-
T Consensus 77 fk~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 77 FKEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HHHhCcCcceEEEeeeccccCccc
Confidence 777667777888999999887553
No 101
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.78 E-value=7.5 Score=48.01 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=32.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK 654 (1035)
Q Consensus 597 ~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk 654 (1035)
.+.|-+.+...+..++.++++++.+|+...+-+....+-.+=.....+...++++.++
T Consensus 279 ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadir 336 (1265)
T KOG0976|consen 279 NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIR 336 (1265)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777777777777777766444443333333333344444444443
No 102
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.75 E-value=4.3 Score=45.06 Aligned_cols=197 Identities=18% Similarity=0.147 Sum_probs=114.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHH
Q 001664 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHE 732 (1035)
Q Consensus 653 Lk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~Wl~~E 732 (1035)
|++.++-++.-+.+--..+..|-++|+- .+.+|.-.|+.+|..+.. |.-|
T Consensus 43 Lqk~lKLneE~ltkTi~qy~~QLn~L~a-------ENt~L~SkLe~EKq~ker-----------------------LEtE 92 (305)
T PF14915_consen 43 LQKSLKLNEETLTKTIFQYNGQLNVLKA-------ENTMLNSKLEKEKQNKER-----------------------LETE 92 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHH-------HHHHHhHHHHHhHHHHHH-----------------------HHHH
Confidence 5555555555556666677778777763 445555666666655422 5555
Q ss_pred HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCCCCCCCcccccCChHHHHHHHHHHHHHHhhchHH
Q 001664 733 LEVS-ANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKA 811 (1035)
Q Consensus 733 lE~~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~~~ 811 (1035)
+|-. .++.-|-...+.-+ -.++.-|++-.+...+ |. .+ -+-.+..|+.|...-.
T Consensus 93 iES~rsRLaaAi~d~dqsq--~skrdlelafqr~rdE------------w~-----~l-qdkmn~d~S~lkd~ne----- 147 (305)
T PF14915_consen 93 IESYRSRLAAAIQDHDQSQ--TSKRDLELAFQRARDE------------WV-----RL-QDKMNSDVSNLKDNNE----- 147 (305)
T ss_pred HHHHHHHHHHHHhhHHHHH--hhHHHHHHHHHHHhhH------------HH-----HH-HHHhcchHHhHHHHhH-----
Confidence 5554 34444444333222 2334444444443211 11 00 0222333444433333
Q ss_pred HHHHHHHhHHHHHHHHhhhccccchhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 812 LVEMASQLSEAEERERALVGRGRWNHL-RFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQR 890 (1035)
Q Consensus 812 i~~l~~ql~~~e~r~~~~~~k~r~~~~-~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~ 890 (1035)
-|.+||+.++.+.. +-+..+.+. .++.|---+|..++..+..+.|+.++.+.-.+--+.+++.-.+.-.-++.++
T Consensus 148 --~LsQqLskaesK~n--sLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL 223 (305)
T PF14915_consen 148 --ILSQQLSKAESKFN--SLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERL 223 (305)
T ss_pred --HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556666654332 122222222 3445556689999999999999999999888888888888888777888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001664 891 KELVKQQRMREQAVTIAL 908 (1035)
Q Consensus 891 ~~l~~~~~~~e~~~~~~~ 908 (1035)
..++.++....+++--+-
T Consensus 224 ~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 224 SQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888877765443
No 103
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.73 E-value=7.9 Score=47.95 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-------
Q 001664 577 TLKLKALEAQILELK--KKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL----QNKIKQEAEQFRQWK------- 643 (1035)
Q Consensus 577 e~kL~eLE~el~~Lk--kk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L----~kkmkee~~~~r~~~------- 643 (1035)
+++|..+|.+..... ...+.+.+-...-.+.+..+..|..-|..+-.--..+ =.++.+=..-+++..
T Consensus 171 e~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~ 250 (569)
T PRK04778 171 EKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLD 250 (569)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCC
Confidence 455555554444433 1222233333333444444455554444442222222 123333333333333
Q ss_pred -HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 001664 644 -ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSV 708 (1035)
Q Consensus 644 -~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~ 708 (1035)
..-+.+|.+|+++.......|..|.-+... -+++++...+..|-+.++++..++...++
T Consensus 251 ~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~------~~~~~i~~~Id~Lyd~lekE~~A~~~vek 310 (569)
T PRK04778 251 HLDIEKEIQDLKEQIDENLALLEELDLDEAE------EKNEEIQERIDQLYDILEREVKARKYVEK 310 (569)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcChHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888777777654333 35566666677777788877777766654
No 104
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=7.6 Score=48.29 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=17.9
Q ss_pred HHHHHHHHhhchHHHHHHHHHhHHHH
Q 001664 798 IASLENMLNMSSKALVEMASQLSEAE 823 (1035)
Q Consensus 798 i~~Le~~~~~~~~~i~~l~~ql~~~e 823 (1035)
...|++.+..+++-|.++.+++.-++
T Consensus 857 ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 857 LSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 34577777777777777777766653
No 105
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.29 E-value=0.014 Score=73.90 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001664 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIK 622 (1035)
Q Consensus 578 ~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK 622 (1035)
.++.+||.+...|..+.+......+...=++++...|+..+..|.
T Consensus 257 ~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E 301 (722)
T PF05557_consen 257 AHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLE 301 (722)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455566655555555444433333344444444455555444444
No 106
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.27 E-value=9.5 Score=45.91 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=24.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Q 001664 492 EHALWQNTMDKELNELNKRLEQKESEMKLFG 522 (1035)
Q Consensus 492 e~~~~q~~l~~El~eL~kqLe~kE~~~k~~~ 522 (1035)
++......|.+.+..++..|+.||++++.+.
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788889999999999999888776
No 107
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.26 E-value=2.4 Score=44.83 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 646 REKELLKLKKEGRKNEFERHKLEA-------LNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1035)
Q Consensus 646 ~~kEi~qLk~~~rK~e~ei~~L~~-------~~~~q~~vL~rK~eE~~a~~krLke~le~~ 699 (1035)
..+++..+..++...+..|..|+. .+.+|-+...+|+.++...++.|.+.+..-
T Consensus 123 L~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L 183 (194)
T PF15619_consen 123 LQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRL 183 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544 567777788888888888888887776643
No 108
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.14 E-value=8.9 Score=44.87 Aligned_cols=120 Identities=26% Similarity=0.234 Sum_probs=77.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001664 601 LKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQR 680 (1035)
Q Consensus 601 ~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~r 680 (1035)
.|.-+.+..+-..|+-++..||.-.|.|+-+-..|.++.-.. --.-+.+.+-+-+++.||.+|+. |+.
T Consensus 403 qk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnks----vsqclEmdk~LskKeeeverLQ~--------lkg 470 (527)
T PF15066_consen 403 QKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKS----VSQCLEMDKTLSKKEEEVERLQQ--------LKG 470 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhH----HHHHHHHHHHhhhhHHHHHHHHH--------HHH
Confidence 333344555566788888888888888876655555432221 12334577888889999988875 666
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001664 681 KTEEAA-IATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADE 759 (1035)
Q Consensus 681 K~eE~~-a~~krLke~le~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~Wl~~ElE~~~~~~e~~~~~e~l~e~R~~l~~E 759 (1035)
+.|.|. +++.+||..- ..+|-|.+.-.+|...+=..-+++|.+|-..
T Consensus 471 elEkat~SALdlLkrEK--------------------------------e~~EqefLslqeEfQk~ekenl~ERqkLKs~ 518 (527)
T PF15066_consen 471 ELEKATTSALDLLKREK--------------------------------ETREQEFLSLQEEFQKHEKENLEERQKLKSR 518 (527)
T ss_pred HHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777766 6666665432 3445555554556666556666778888777
Q ss_pred HHHHH
Q 001664 760 LTILK 764 (1035)
Q Consensus 760 l~~Lk 764 (1035)
+++|=
T Consensus 519 leKLv 523 (527)
T PF15066_consen 519 LEKLV 523 (527)
T ss_pred HHHHH
Confidence 77763
No 109
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.88 E-value=11 Score=44.37 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=31.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQER 551 (1035)
Q Consensus 496 ~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkEr 551 (1035)
...+|+.++.+++..|...+..+..+. .+ ....+++|..++..+.+|+.++
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~-~~----l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETA-DD----LKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hH----HHHHHhhHHHHHHHHHHHHHHH
Confidence 345667777777777777776665544 22 2234466777777776666554
No 110
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.58 E-value=9.7 Score=42.58 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 612 KRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREKELLKLKKE 656 (1035)
Q Consensus 612 ~~L~~ei~~mK~~kv~L---~kkmkee~~~~r~~~~~~~kEi~qLk~~ 656 (1035)
..|..++..+...+-+| .+.|++....++..+.....+|.+|+.+
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~k 77 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEK 77 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 4455566666666666666666666554
No 111
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.56 E-value=18 Score=45.56 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001664 864 EKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (1035)
Q Consensus 864 ~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 913 (1035)
..+.++.+|+..+..+.....+....+.-.+.++-..-+-++.|-+-.-.
T Consensus 416 e~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 416 EDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555666666666666666666554433
No 112
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.48 E-value=20 Score=45.82 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.9
Q ss_pred ccCCCCccccc
Q 001664 88 GQTGSGKTYTM 98 (1035)
Q Consensus 88 GqTGSGKTyTm 98 (1035)
|-.||||+-.+
T Consensus 32 GlNGSGKSNIL 42 (1174)
T KOG0933|consen 32 GLNGSGKSNIL 42 (1174)
T ss_pred cCCCCCchHHH
Confidence 66789998777
No 113
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.44 E-value=25 Score=46.67 Aligned_cols=8 Identities=13% Similarity=0.584 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 001664 113 QVMNALFN 120 (1035)
Q Consensus 113 r~~~~LF~ 120 (1035)
.-+++||.
T Consensus 172 kkfD~IF~ 179 (1294)
T KOG0962|consen 172 KKFDDIFS 179 (1294)
T ss_pred HHHHHHHH
Confidence 34445554
No 114
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.39 E-value=6.9 Score=42.63 Aligned_cols=95 Identities=18% Similarity=0.301 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1035)
Q Consensus 577 e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~ 656 (1035)
...+.+|+.++..+++... .++.++..+.+++..+......|..++...-..+...+...+-++..++++
T Consensus 88 ~~e~~aL~~E~~~ak~r~~----------~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~ 157 (239)
T COG1579 88 ERELRALNIEIQIAKERIN----------SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677766665554333 233444444444444444444444444444444444444444444433333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001664 657 GRKNEFERHKLEALNQRQKMVLQRKTEE-AAIATKRL 692 (1035)
Q Consensus 657 ~rK~e~ei~~L~~~~~~q~~vL~rK~eE-~~a~~krL 692 (1035)
.. .+..+...|..++.. +.+.-.|+
T Consensus 158 ~~-----------~~~~~~~~L~~~l~~ell~~yeri 183 (239)
T COG1579 158 GQ-----------ELSSKREELKEKLDPELLSEYERI 183 (239)
T ss_pred HH-----------HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 22 344445555555543 33333333
No 115
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.25 E-value=0.013 Score=74.24 Aligned_cols=28 Identities=43% Similarity=0.534 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIEN 560 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~ 560 (1035)
+.+++..|+.+...+..|++.|.+.+.+
T Consensus 396 L~ek~~~l~~eke~l~~e~~~L~e~~ee 423 (713)
T PF05622_consen 396 LEEKLEALEEEKERLQEERDSLRETNEE 423 (713)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666554433
No 116
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.02 E-value=22 Score=44.39 Aligned_cols=243 Identities=17% Similarity=0.221 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHH
Q 001664 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKL 580 (1035)
Q Consensus 501 ~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL 580 (1035)
...+.+|.+.|..+...+......+.... ....-..|+.++..|.+|++.|..++...-. ....+..+....+.+|
T Consensus 49 ~~~V~eLE~sL~eLk~q~~~~~~~~~pa~---pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~-~ne~Ls~L~~EqEerL 124 (617)
T PF15070_consen 49 ISRVQELERSLSELKNQMAEPPPPEPPAG---PSEVEQQLQAEAEHLRKELESLEEQLQAQVE-NNEQLSRLNQEQEERL 124 (617)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCcccccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34456666666665555443321211110 0122245666777777777777766654321 2335667777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001664 581 KALEAQILELKKKQESQVELL--------------KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKAS- 645 (1035)
Q Consensus 581 ~eLE~el~~Lkkk~~~~~~l~--------------k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~- 645 (1035)
.+||..+.+++....++.+|+ .....+..++..|++-+..|-..+.+|.-++..|...-++....
T Consensus 125 ~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl 204 (617)
T PF15070_consen 125 AELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKL 204 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 999988888887666655544 34455555555555555555555555555555554444433322
Q ss_pred --HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh--hhhhccccCCCCCCCC
Q 001664 646 --REKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRK---TEEAAIATKRLKELLEARKSS--ARENSVNSTGYTTPTG 718 (1035)
Q Consensus 646 --~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK---~eE~~a~~krLke~le~~k~~--~~~~e~~~~~~~~~~~ 718 (1035)
.+-++-.++..+.-+..|+..|+.....-..-|+.= ..-+++....|...+--+... +-+..
T Consensus 205 ~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~e----------- 273 (617)
T PF15070_consen 205 GELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHE----------- 273 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 223344566666666667777766444333333322 222222222222221111110 00000
Q ss_pred CCchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 719 QSNEKSLQKWLEHELEVS-ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1035)
Q Consensus 719 ~~~~~~~~~Wl~~ElE~~-~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1035)
-.|-.-.+|.. ..+.++...++++......+...|..+..
T Consensus 274 -------E~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 274 -------ESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred -------HhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 01112223333 45667777788877778888888776654
No 117
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.88 E-value=14 Score=41.68 Aligned_cols=59 Identities=31% Similarity=0.334 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001664 642 WKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSAR 704 (1035)
Q Consensus 642 ~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~ 704 (1035)
.-.....||+.-..+..+.+.||.+|.+ |..-|+++.+...+.+..|...|..-|.+++
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~Lls----qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~ 272 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLS----QIVDLQQRCKQLAAENEELQQHLQASKESQR 272 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3345666777777777777778888865 5566888899999999999888877665553
No 118
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.87 E-value=11 Score=40.39 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001664 535 KKIMELEEEKRIVQQERDRLLAEIENLA 562 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~ 562 (1035)
.+-.....++..+..||+.+.+.|.+++
T Consensus 62 ~~~~~~~~~i~~~~~erdq~~~dL~s~E 89 (207)
T PF05010_consen 62 KQKELSEAEIQKLLKERDQAYADLNSLE 89 (207)
T ss_pred hhHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344445667777777777777777663
No 119
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.83 E-value=0.017 Score=73.21 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHh
Q 001664 752 VQAALADELTILKQ 765 (1035)
Q Consensus 752 ~R~~l~~El~~Lk~ 765 (1035)
....+..|+..|+.
T Consensus 265 en~~l~~Elk~Lr~ 278 (722)
T PF05557_consen 265 ENRRLREELKHLRQ 278 (722)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455555554
No 120
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=20 Score=42.80 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 001664 378 SSDMQKLRQQLKYLQAELCAR 398 (1035)
Q Consensus 378 ~~ei~~Lr~eI~~Lq~eL~~~ 398 (1035)
...+..|+.+|..|-.+|...
T Consensus 7 eq~ve~lr~eierLT~el~q~ 27 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQT 27 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 456788999999998888654
No 121
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.21 E-value=0.032 Score=60.17 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=28.3
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..||||..+..+ + +...|.. +..+.+.--..|| .+|-||++|+||||-|
T Consensus 3 ~~~tFdnfv~g~-~-N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVGE-S-NELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--TT-T-THHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHH
T ss_pred CCCccccCCcCC-c-HHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHH
Confidence 369999988433 3 4444433 3334333111233 4788999999999977
No 122
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.18 E-value=0.025 Score=71.52 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHhhchHHHHHHHHHhHHH
Q 001664 799 ASLENMLNMSSKALVEMASQLSEA 822 (1035)
Q Consensus 799 ~~Le~~~~~~~~~i~~l~~ql~~~ 822 (1035)
..|+......+..+..++.++.++
T Consensus 498 ~~Le~~~~~~~~~~~~lq~qle~l 521 (713)
T PF05622_consen 498 EKLEEENREANEKILELQSQLEEL 521 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555554
No 123
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.13 E-value=0.048 Score=60.34 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=29.2
Q ss_pred ccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 67 ~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
-.+.|+|..+.+--++.|+..|+||||||+||
T Consensus 111 LglP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 111 LGLPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred cCCCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 34678899999999999999999999999998
No 124
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.05 E-value=28 Score=42.69 Aligned_cols=137 Identities=22% Similarity=0.232 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSD---GHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDE 609 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~---~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~ 609 (1035)
..+++.+|..+|..+....+.........+...- .........|+..|.+-+.++..|+.....-..|...-.....
T Consensus 170 ~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~ 249 (522)
T PF05701_consen 170 NEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASA 249 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666554333222211000 0011233456666666776677776655333333332223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 610 ~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
.+..|+.++...+..+.......+.....+...-.....|+.+.+..+.+...|+..|..
T Consensus 250 ~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~ 309 (522)
T PF05701_consen 250 ELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRA 309 (522)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554443333211122223333333444555666666666666666555554
No 125
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.00 E-value=31 Score=43.05 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccchhh--hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHH-
Q 001664 532 HFGKKIMELEEEKRIVQQE---RDRLLAEIENLAANSDGHTQKM--QDGHTLKLKALEAQILELKKKQ---ESQVELLK- 602 (1035)
Q Consensus 532 ~ye~kl~eLEeei~~LqkE---rd~Ll~~l~~~~~~~~~~~~KL--ke~~e~kL~eLE~el~~Lkkk~---~~~~~l~k- 602 (1035)
..+.+|.+|+..+..++.+ +..|++.+++ ++..-.+-+ ..+...+|.+|+.-...|-... ...-....
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqs---dk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~ 195 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQS---DKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQH 195 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 3456677777766666544 3344444433 222111111 1233455556655444444332 12222222
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 001664 603 QKHKSDEAAKRLQAEIQSIKA 623 (1035)
Q Consensus 603 ~k~k~e~~~~~L~~ei~~mK~ 623 (1035)
.++.+..++..|+.++..|+.
T Consensus 196 ~~keL~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 196 VKKELQKKLGELQEKLHNLKE 216 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566665555543
No 126
>PRK09039 hypothetical protein; Validated
Probab=92.89 E-value=13 Score=43.03 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001664 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (1035)
Q Consensus 532 ~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~ 611 (1035)
.++..+.+|+.+...++.+|..|.......... ...-+.++..++.+|..++..- ...-.++
T Consensus 78 ~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~--------~~~~~~~~~~l~~~L~~~k~~~----------se~~~~V 139 (343)
T PRK09039 78 DLQDSVANLRASLSAAEAERSRLQALLAELAGA--------GAAAEGRAGELAQELDSEKQVS----------ARALAQV 139 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------cchHHHHHHHHHHHHHHHHHHH----------HHhhHHH
Confidence 367889999999999999999888877643100 0122344444443333333222 2233456
Q ss_pred HHHHHHHHHHHHHHHH
Q 001664 612 KRLQAEIQSIKAQKVQ 627 (1035)
Q Consensus 612 ~~L~~ei~~mK~~kv~ 627 (1035)
..|+.+|..|+.|...
T Consensus 140 ~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 140 ELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777888888877444
No 127
>PRK09039 hypothetical protein; Validated
Probab=92.66 E-value=13 Score=42.92 Aligned_cols=38 Identities=13% Similarity=-0.009 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 632 IKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 632 mkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
.+.++......-.....+|..||.++..-+.+|...+.
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666777888888887777777777766
No 128
>PRK06893 DNA replication initiation factor; Validated
Probab=92.65 E-value=0.05 Score=59.07 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=32.3
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..++||..++.. + .. .+..+...+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~-~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADN-N-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCC-h-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 468999999643 2 11 1233334444578888899999999999998
No 129
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.40 E-value=36 Score=42.30 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 001664 498 NTMDKELNELNKRLEQKESEMKLFG 522 (1035)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~ 522 (1035)
..++.++.+|..+++..+..++.+.
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777776665544
No 130
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.23 E-value=7.5 Score=44.65 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 609 EAAKRLQAEIQSIKAQKVQLQNKI 632 (1035)
Q Consensus 609 ~~~~~L~~ei~~mK~~kv~L~kkm 632 (1035)
.++..+..+|..+..++.++...|
T Consensus 237 ~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 237 EELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 131
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.09 E-value=24 Score=42.80 Aligned_cols=109 Identities=18% Similarity=0.251 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cccc
Q 001664 499 TMDKELNELNKRLEQKESEMKLFGD-ID--TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN-------SDGH 568 (1035)
Q Consensus 499 ~l~~El~eL~kqLe~kE~~~k~~~~-~d--~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~-------~~~~ 568 (1035)
=++.++.++..+|+..|..+..+.. +. .......+...+..++++...++.++..+...+..+... ....
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~ 244 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAG 244 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcc
Confidence 3466777777778777777765531 10 001111244566666666666666666666555544210 0000
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhH
Q 001664 569 TQKMQDGHTLKLKALEAQILELKKKQES-QVELLKQKHKS 607 (1035)
Q Consensus 569 ~~KLke~~e~kL~eLE~el~~Lkkk~~~-~~~l~k~k~k~ 607 (1035)
....-...+.+|.+++.++..|...-.. |-.+...+++.
T Consensus 245 ~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi 284 (498)
T TIGR03007 245 SSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREI 284 (498)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 0112235567889999888888754443 55554444433
No 132
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.04 E-value=19 Score=38.39 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001664 538 MELEEEKRIVQQERDRLLAEIEN 560 (1035)
Q Consensus 538 ~eLEeei~~LqkErd~Ll~~l~~ 560 (1035)
..|++...+++.||+.|......
T Consensus 110 evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 110 EVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777766554
No 133
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=92.01 E-value=20 Score=38.45 Aligned_cols=117 Identities=24% Similarity=0.277 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001664 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK--K 655 (1035)
Q Consensus 578 ~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk--~ 655 (1035)
..|-+.+..+..|+.+...-....+.|...+.+|..|+.++..+...+...++.|+. +|=..++..++++..++ .
T Consensus 54 ~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~---qfl~EK~~LEke~~e~~i~~ 130 (206)
T PF14988_consen 54 DQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAES---QFLQEKARLEKEASELKILQ 130 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHH
Confidence 444445555556666666666777777777777777777777777777765555543 45555555555552221 1
Q ss_pred HhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 656 EGRKNEFER-HKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1035)
Q Consensus 656 ~~rK~e~ei-~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le 697 (1035)
-..+...++ .+.++..-.-+..+-.-+.-+.+.|.+|...|.
T Consensus 131 l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~ 173 (206)
T PF14988_consen 131 LGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELL 173 (206)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222221 122222333344455555555666666655443
No 134
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.95 E-value=37 Score=41.52 Aligned_cols=86 Identities=29% Similarity=0.279 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL---KKEGRKNEFERHKLEALNQRQKMVLQRKTE 683 (1035)
Q Consensus 607 ~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qL---k~~~rK~e~ei~~L~~~~~~q~~vL~rK~e 683 (1035)
++.++..|..|+++++.+. ..+.+.|++.....+--+..+ +.+.+....|+..+.....++..-+..++.
T Consensus 293 l~~Qi~~l~~e~~d~e~~~-------~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~ 365 (511)
T PF09787_consen 293 LERQIEQLRAELQDLEAQL-------EGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLK 365 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 3344445555555555444 344444444433333333223 677788888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 001664 684 EAAIATKRLKELLEAR 699 (1035)
Q Consensus 684 E~~a~~krLke~le~~ 699 (1035)
+-...+.+|...+-++
T Consensus 366 ~ke~E~q~lr~~l~~~ 381 (511)
T PF09787_consen 366 EKESEIQKLRNQLSAR 381 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888999998877754
No 135
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.75 E-value=55 Score=43.06 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=13.9
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
++..+-+|+||||||..|
T Consensus 25 ~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 25 SGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 344456899999999876
No 136
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.71 E-value=30 Score=39.99 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 001664 404 SDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHC 441 (1035)
Q Consensus 404 ~~e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~~~E~~ 441 (1035)
+.-...|..++..|.++|..|.-+|+.+...|..+.+.
T Consensus 42 P~~~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qee 79 (552)
T KOG2129|consen 42 PSPGESLGARVSSLSQRNKVLKGELETLKGKCKIMQEE 79 (552)
T ss_pred CCCHHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhc
Confidence 34456788899999999999999999888888765443
No 137
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.64 E-value=54 Score=42.71 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 663 ERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1035)
Q Consensus 663 ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le 697 (1035)
.|..|+..+..-.+.|-+|--|+.-.++|+...|.
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 35566656666666777777777777777766554
No 138
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.60 E-value=30 Score=39.73 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=7.2
Q ss_pred HHhhhccCCCccccc
Q 001664 907 ALASSASGSSWRSSK 921 (1035)
Q Consensus 907 ~~~~~~~~~~~~~~~ 921 (1035)
.++++..++|..|..
T Consensus 402 ~~at~~~~pss~s~~ 416 (499)
T COG4372 402 GRATPRCGPSSGSCR 416 (499)
T ss_pred ccccCccCCCCccHH
Confidence 345555554444443
No 139
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.52 E-value=16 Score=36.28 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 670 LNQRQKMVLQRKTEEAAIATKRLKELLE 697 (1035)
Q Consensus 670 ~~~~q~~vL~rK~eE~~a~~krLke~le 697 (1035)
.......-++++++++...|+=|-+.|+
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455566677777777776666655
No 140
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.49 E-value=44 Score=41.40 Aligned_cols=61 Identities=15% Similarity=0.101 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 638 QFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1035)
Q Consensus 638 ~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~ 698 (1035)
+|...-...+.++.-.+...+.....+.+++....+|...++.+...+++...+|.+.-+.
T Consensus 162 k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~ 222 (716)
T KOG4593|consen 162 KLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADH 222 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666677777888888888888888888888888888888888887777665443
No 141
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=91.45 E-value=23 Score=38.01 Aligned_cols=82 Identities=16% Similarity=0.390 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 001664 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQE-----SQVELL 601 (1035)
Q Consensus 527 ~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~-----~~~~l~ 601 (1035)
..+-..|..++.+|+.+...-.++...+..+|..+ ....++++..+..|++|+.++...+.+-. -+.+.+
T Consensus 39 ~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l-----~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl 113 (206)
T PF14988_consen 39 QELVSRYAKQTSELQDQLLQKEKEQAKLQQELQAL-----KEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFL 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556789999999999999999999999999887 35678899999999999988888764433 366666
Q ss_pred HHHhhHHHHHHH
Q 001664 602 KQKHKSDEAAKR 613 (1035)
Q Consensus 602 k~k~k~e~~~~~ 613 (1035)
..|..++.++..
T Consensus 114 ~EK~~LEke~~e 125 (206)
T PF14988_consen 114 QEKARLEKEASE 125 (206)
T ss_pred HHHHHHHHHHHH
Confidence 777777666533
No 142
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.15 E-value=48 Score=41.18 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001664 540 LEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 540 LEeei~~LqkErd~Ll~~l~~~ 561 (1035)
++.++..++.+....+..+.++
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l 275 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL 275 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555554
No 143
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.13 E-value=33 Score=39.36 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001664 570 QKMQDGHTLKLKALEAQILELKKKQES 596 (1035)
Q Consensus 570 ~KLke~~e~kL~eLE~el~~Lkkk~~~ 596 (1035)
..+......+...|+.++..|+....+
T Consensus 176 ~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 176 DELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556666677666666654443
No 144
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.07 E-value=54 Score=41.64 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 613 RLQAEIQSIKAQKVQLQNKI--KQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATK 690 (1035)
Q Consensus 613 ~L~~ei~~mK~~kv~L~kkm--kee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~k 690 (1035)
.|++|+..+.+.+.++.+.. .+|.++.-.....+-.++...=.+++....++.+--.+-++|..+-+.-+.++.-.+.
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~ 469 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT 469 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88888888888888876665 3333332222222222222222233333333333333444555555555555555555
Q ss_pred HHHHHHHH
Q 001664 691 RLKELLEA 698 (1035)
Q Consensus 691 rLke~le~ 698 (1035)
.|-+.|+.
T Consensus 470 ~L~d~le~ 477 (980)
T KOG0980|consen 470 NLNDQLEE 477 (980)
T ss_pred HHHHHHHH
Confidence 55555553
No 145
>PRK06620 hypothetical protein; Validated
Probab=90.82 E-value=0.089 Score=56.58 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=31.6
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCC---ccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n---~tI~aYGqTGSGKTyTm 98 (1035)
..|+||..+... + +...|..+ ..+.+. -|+| -.++-||++||||||.+
T Consensus 11 ~~~tfd~Fvvg~-~-N~~a~~~~-~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 11 SKYHPDEFIVSS-S-NDQAYNII-KNWQCG--FGVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCchhhEecc-c-HHHHHHHH-HHHHHc--cccCCCcceEEEECCCCCCHHHHH
Confidence 469999988543 3 45555543 222221 1444 34899999999999998
No 146
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.78 E-value=67 Score=42.26 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001664 500 MDKELNELNKRLEQKESEMKLF 521 (1035)
Q Consensus 500 l~~El~eL~kqLe~kE~~~k~~ 521 (1035)
+..++..++.++..++...+.+
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~ 251 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERL 251 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666665555554443
No 147
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.68 E-value=33 Score=38.50 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001664 582 ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ--LQNKIKQEAEQFRQWKASREKELLKLKKEGRK 659 (1035)
Q Consensus 582 eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~--L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK 659 (1035)
.++.+|..|..++.+..=-...-.+.-+.|..|..++..-+++.-. =++-+..++..++........+|..|-.+...
T Consensus 111 ~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe 190 (294)
T COG1340 111 SLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQE 190 (294)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445554444442222223344455555566666555443321 13344455555555555555555556555555
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 660 NEFERHKLEA---LNQRQKMVLQRKTEEAAIATKRLKELL 696 (1035)
Q Consensus 660 ~e~ei~~L~~---~~~~q~~vL~rK~eE~~a~~krLke~l 696 (1035)
.-.+|.++-. ...+...-+-.++.+......++.+.+
T Consensus 191 ~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~ 230 (294)
T COG1340 191 YHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEF 230 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5555555544 222223345555555555555554443
No 148
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.08 E-value=45 Score=39.17 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 579 KLKALEAQILELKKKQESQVELLK 602 (1035)
Q Consensus 579 kL~eLE~el~~Lkkk~~~~~~l~k 602 (1035)
.+..++.++..+++.......|.+
T Consensus 166 ~l~~~~~~l~~~~~~~~~~~~L~~ 189 (423)
T TIGR01843 166 QLQALRQQLEVISEELEARRKLKE 189 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333333333
No 149
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.68 E-value=5.1 Score=45.74 Aligned_cols=28 Identities=46% Similarity=0.637 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 534 GKKIMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
...+.++++++..+++|.+.+.+++..+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666555
No 150
>PF15294 Leu_zip: Leucine zipper
Probab=89.58 E-value=12 Score=41.59 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 001664 650 LLKLKKEGRKNEFERHKLEA---LNQRQKMVLQRKTEEAAIATKRL 692 (1035)
Q Consensus 650 i~qLk~~~rK~e~ei~~L~~---~~~~q~~vL~rK~eE~~a~~krL 692 (1035)
++.+..+++-.+.++.+.-. .+..-+.+|..|.+++.+..+||
T Consensus 231 lL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 231 LLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHh
Confidence 33344444444444443332 45555666777777777666665
No 151
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.23 E-value=72 Score=40.29 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.8
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
+++-||+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999988
No 152
>PRK09087 hypothetical protein; Validated
Probab=89.22 E-value=0.16 Score=55.17 Aligned_cols=46 Identities=28% Similarity=0.257 Sum_probs=31.3
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|+||..+..+ + +...|. ++.....-.|..++-||++||||||-+
T Consensus 16 ~~~~~~~Fi~~~-~-N~~a~~-----~l~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 16 PAYGRDDLLVTE-S-NRAAVS-----LVDHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCChhceeecC-c-hHHHHH-----HHHhcccCCCCeEEEECCCCCCHHHHH
Confidence 468999999533 2 344555 333333223555899999999999998
No 153
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.15 E-value=85 Score=41.01 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREKELLKLK 654 (1035)
Q Consensus 578 ~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L---~kkmkee~~~~r~~~~~~~kEi~qLk 654 (1035)
..+..|+++|.++++.- ...+...+.+.+.+++.|+.++..+..+.+.| ...++++...-++.+-..+.+|.+|+
T Consensus 372 ~~~d~l~k~I~~~~~~~--~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQT--NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566777777776554 56777778888888888888888888776665 44555555566666666778888888
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 655 KEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATK 690 (1035)
Q Consensus 655 ~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~k 690 (1035)
+..+-...+|..|..-..-+.+..=..+-++..++.
T Consensus 450 k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~ 485 (1074)
T KOG0250|consen 450 KKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIE 485 (1074)
T ss_pred HHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHH
Confidence 888888888888876444444555455555444433
No 154
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.11 E-value=59 Score=39.13 Aligned_cols=141 Identities=19% Similarity=0.233 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q 001664 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-----QVELL 601 (1035)
Q Consensus 527 ~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~-----~~~l~ 601 (1035)
.....+++......+++-.+.+.|.|++++-+.+.+-.+.+...|+.+-- ...++-.+.+.+|+.++.. -+.+.
T Consensus 420 ~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele-r~~kdqnkkvaNlkHk~q~Ekkk~aq~le 498 (654)
T KOG4809|consen 420 ADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE-RHMKDQNKKVANLKHKQQLEKKKNAQLLE 498 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC-chhhhhhhHHhhHHHHHHHHHHHHHHHHH
Confidence 34456678888888888899999999999887776544444555543222 2333333334444422221 11111
Q ss_pred HHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 602 KQKHKSD-----EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 602 k~k~k~e-----~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
...+..+ .+.-...++|..|.+.|.. .-.++.-..-.++..+.++--+.+|+-+-|+.-.++-.+..
T Consensus 499 e~rrred~~~d~sqhlq~eel~~alektkQe-l~~tkarl~stqqslaEke~HL~nLr~errk~Lee~lemK~ 570 (654)
T KOG4809|consen 499 EVRRREDSMADNSQHLQIEELMNALEKTKQE-LDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKK 570 (654)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHhhC-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1222111 1222245566666666655 34455556666777788888888888888887777666654
No 155
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.97 E-value=32 Score=37.27 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001664 536 KIMELEEEKRIVQQERDRLLAEI 558 (1035)
Q Consensus 536 kl~eLEeei~~LqkErd~Ll~~l 558 (1035)
++.+++..+++++.+...|.-++
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~ 75 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQ 75 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 156
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.88 E-value=42 Score=37.17 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001664 625 KVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1035)
Q Consensus 625 kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~ 668 (1035)
.+-++..+..........+...+.=+.+|+.+..+...|+..|+
T Consensus 174 l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 174 LVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444444445555566666667777777777777777776
No 157
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.62 E-value=5.6 Score=34.05 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 844 AKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVK 895 (1035)
Q Consensus 844 Ak~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~ 895 (1035)
||..| ...+...+......+.+|+|...+..+|...+..+..++.++..
T Consensus 12 akQ~~---~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 12 AKQAI---QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666 67777777788888888999888888888888888888877653
No 158
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.51 E-value=9.9 Score=44.39 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=21.5
Q ss_pred EEcCCHHHHHHHHHhcccCcccccCCCCC-CCCCcEEEEEEEEEee
Q 001664 193 VAVNTLQEMAACLEQGSLSRATGSTNMNN-QSSRSHAIFTITLEQM 237 (1035)
Q Consensus 193 ~~V~s~~e~~~ll~~g~~~R~~~~T~~N~-~SSRSH~IftI~v~q~ 237 (1035)
+...+..++..++..=+ . ..+|. .+--.|++|...|+-.
T Consensus 120 IkFr~q~da~~Fy~efN-G-----k~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFN-G-----KQFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred EEeccchhHHHHHHHcC-C-----CcCCCCCccceeEEEEEEEEEE
Confidence 56677777777775421 1 11221 1124688888777653
No 159
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.44 E-value=81 Score=39.86 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001664 544 KRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA 623 (1035)
Q Consensus 544 i~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~ 623 (1035)
+..|....+.+....... ... .....++.+++.++.++..+ ....+.++..++.++.+..+
T Consensus 184 ~~~L~~dl~~~~~~~~~~-----~~~----~~~~~~~~~le~el~~l~~~----------~e~l~~~i~~l~~ele~a~~ 244 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKS-----ELP----SSILSEIEALEAELKEQSEK----------YEDLAQEIAHLRNELEEAQR 244 (650)
T ss_pred HHHHHHHHHHHHHHHHhc-----ccc----hHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 666666666655443321 011 11234555555444444433 23344555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001664 624 QKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1035)
Q Consensus 624 ~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~ 668 (1035)
....+..+++.+...+-..+...++++.+++.+......++.++-
T Consensus 245 ~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 245 SLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666555566666666666666665555555443
No 160
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.37 E-value=30 Score=34.86 Aligned_cols=79 Identities=23% Similarity=0.322 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHH
Q 001664 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKL 580 (1035)
Q Consensus 501 ~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL 580 (1035)
...+..++.....+|.++..+. .++..|+.++..++.....+...+.... +...-.+.+.+++
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~------------~K~~~lE~eld~~~~~l~~~k~~lee~~-----~~~~~~E~l~rri 82 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQ------------KKNQQLEEELDKLEEQLKEAKEKLEESE-----KRKSNAEQLNRRI 82 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHhHHHHHhhH
Confidence 3444444444444444443333 4555555555555555544444444321 1112223567777
Q ss_pred HHHHHHHHHHHHHHHH
Q 001664 581 KALEAQILELKKKQES 596 (1035)
Q Consensus 581 ~eLE~el~~Lkkk~~~ 596 (1035)
+.||.++....+...+
T Consensus 83 q~LEeele~ae~~L~e 98 (143)
T PF12718_consen 83 QLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888666666555444
No 161
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=88.29 E-value=5.5 Score=39.68 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccccccc
Q 001664 846 NLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASGSSWRSSKHFAD 925 (1035)
Q Consensus 846 ~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1035)
.+|.||+..-...+.....-+.+=.||+.++..|+++++..+.-..+|..-.++.|-++-.-=...+.......+.....
T Consensus 4 GVl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~~~~~ 83 (134)
T PF08232_consen 4 GVLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLNQSQK 83 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 47889999999999888888999999999999999999999999999999999999998766555433111111100000
Q ss_pred ccCCCCCCcccCCccccccccccccCcccchhhhhhhcc
Q 001664 926 DMSGPLSPVSLPAPKQLKFTPGIVNGSVRESAAFVDQTR 964 (1035)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1035)
..+........+......=.|++.+...+.|-.|+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~L~~~l 122 (134)
T PF08232_consen 84 KKSSSSDEELEEDSDEESSSPEIDESKWKKSRQLLRKYL 122 (134)
T ss_pred cccccccccccCCcccccCCCcccHHHHHHHHHHHHHHH
Confidence 000111111223333334446666777778888888743
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.28 E-value=0.16 Score=62.31 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=33.0
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|+||..+... + +...|. .+..++...-.+||. ||-||.+|+||||-+
T Consensus 283 ~~~TFDnFvvG~-s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL 331 (617)
T PRK14086 283 PKYTFDTFVIGA-S-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLL 331 (617)
T ss_pred CCCCHhhhcCCC-c-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHH
Confidence 469999877432 2 333443 344455544446776 889999999999998
No 163
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.15 E-value=96 Score=40.41 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHH
Q 001664 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWK---ASREKELLKLKKEGRKNEFERHK 666 (1035)
Q Consensus 606 k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~---~~~~kEi~qLk~~~rK~e~ei~~ 666 (1035)
..+..+..+.++|..+++..-+++..|-.....-+..+ ...-|++.+..++.+.++..+..
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555554444433333322222 34455666666666666655555
No 164
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.15 E-value=16 Score=35.65 Aligned_cols=89 Identities=24% Similarity=0.366 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001664 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L 614 (1035)
..+..+.+++..++.+|+.+.+++-.+-...+ .. ......+..|+.++.+|+.+... ++-+--...+++..|
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e-~~----~~~~~~~~~L~~el~~l~~ry~t---~LellGEK~E~veEL 101 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENE-EL----RALKKEVEELEQELEELQQRYQT---LLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHhcchHHHHHHH
Confidence 44566777778888888888887776522211 11 22346777888777777765544 444444556789999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001664 615 QAEIQSIKAQKVQLQNK 631 (1035)
Q Consensus 615 ~~ei~~mK~~kv~L~kk 631 (1035)
+.+|.+||...-..+..
T Consensus 102 ~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 102 RADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999877665443
No 165
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.95 E-value=53 Score=37.18 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 856 AETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELV 894 (1035)
Q Consensus 856 ~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~ 894 (1035)
..++-....+.++|.|++.|..+....+.+...++..+-
T Consensus 265 ~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 265 QASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444455678899999999999988888887776653
No 166
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=87.85 E-value=80 Score=39.15 Aligned_cols=328 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHH
Q 001664 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL 578 (1035)
Q Consensus 499 ~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~ 578 (1035)
+....+.++...|+..|..+..+. +.+.+|-+.-.+-..+.+.|......+ -..+-.-+-.|-.
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~------------~~l~~L~~~e~~nr~~i~~l~~~y~~l----rk~ll~~~~~~G~ 161 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEIL------------DELDELLESEEKNREEIEELKEKYREL----RKELLAHSFSYGP 161 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhch
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 579 KLKALEAQILELKKKQES---------QVELLKQKHKSDEAAKRLQAEIQSI----KAQKVQLQNKIKQEAEQFRQWKAS 645 (1035)
Q Consensus 579 kL~eLE~el~~Lkkk~~~---------~~~l~k~k~k~e~~~~~L~~ei~~m----K~~kv~L~kkmkee~~~~r~~~~~ 645 (1035)
-+..||.+|..+...-.. +.+-...-.+.+..+..|...|..+ +.-+..+=.++.+=..-+++....
T Consensus 162 a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~ 241 (560)
T PF06160_consen 162 AIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEE 241 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHC
Q ss_pred --------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCC
Q 001664 646 --------REKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPT 717 (1035)
Q Consensus 646 --------~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~~~~e~~~~~~~~~~ 717 (1035)
-.++|.+++++.......|..|.-+..... ++++...+..|=+.++.+-.++....+....
T Consensus 242 gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~------~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~----- 310 (560)
T PF06160_consen 242 GYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEE------NEEIEERIDQLYDILEKEVEAKKYVEKNLKE----- 310 (560)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----
Q ss_pred CCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCCCCCCCcccccCChHHHHHH
Q 001664 718 GQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMER 797 (1035)
Q Consensus 718 ~~~~~~~~~~Wl~~ElE~~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~ 797 (1035)
....+....+....+..|+..+++ ...+..+.....
T Consensus 311 ------------------------l~~~l~~~~~~~~~l~~e~~~v~~--------------------sY~L~~~e~~~~ 346 (560)
T PF06160_consen 311 ------------------------LYEYLEHAKEQNKELKEELERVSQ--------------------SYTLNHNELEIV 346 (560)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHH--------------------hcCCCchHHHHH
Q ss_pred HHHHHHHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 798 IASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLN 877 (1035)
Q Consensus 798 i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~ 877 (1035)
..++..+.........+...+.+- ....+...-.+.+...+|.+.+.+..
T Consensus 347 -~~l~~~l~~l~~~~~~~~~~i~~~-----------------------------~~~yS~i~~~l~~~~~~l~~ie~~q~ 396 (560)
T PF06160_consen 347 -RELEKQLKELEKRYEDLEERIEEQ-----------------------------QVPYSEIQEELEEIEEQLEEIEEEQE 396 (560)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcC-----------------------------CcCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccccccccc
Q 001664 878 DLVALLKQSEAQRKELVKQQRMREQAVTIALASSASGSSWRSSKHFADDM 927 (1035)
Q Consensus 878 el~~~l~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1035)
++...+..+...-.+....+......+...-+.....+=|+-...|.+.+
T Consensus 397 ~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~ 446 (560)
T PF06160_consen 397 EINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYF 446 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
No 167
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.68 E-value=33 Score=34.47 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001664 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (1035)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~ 562 (1035)
..+...+..|.+.|+..+.....+. .+..+ ....+..|+.++..+..++..|..+|.++.
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~-~daEn----~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLI-LDAEN----SKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443322 22222 235566777777777777777777777663
No 168
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.63 E-value=16 Score=36.93 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001664 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L 614 (1035)
.....|.+++..+..+.+.|...+..+ +.++.+++.++..++. ....+.+.-...+..++.+
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL---------------~~~~~~~ere~~~~~~---~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERL---------------KEQLEELERELASAEE---KERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 445666667777666666665555433 2344455544433322 2223333333444445555
Q ss_pred HHHHHHHHHH
Q 001664 615 QAEIQSIKAQ 624 (1035)
Q Consensus 615 ~~ei~~mK~~ 624 (1035)
.+|++.++..
T Consensus 114 kee~~klk~~ 123 (151)
T PF11559_consen 114 KEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 169
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.56 E-value=7.7 Score=41.06 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 534 GKKIMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
+.++..+.++...+.+.+..+...+-.+
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~ 100 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVEL 100 (194)
T ss_dssp ----------------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4555566666666666666666555544
No 170
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=87.52 E-value=68 Score=37.94 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 608 DEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAI 687 (1035)
Q Consensus 608 e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a 687 (1035)
+..+..=.++|.+|+.-|.+|=+....-+......+..++.|.+-|..+..|.+.+ +-..+..|+-+.+.+.|
T Consensus 452 dk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke-------nl~ERqkLKs~leKLva 524 (527)
T PF15066_consen 452 DKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE-------NLEERQKLKSRLEKLVA 524 (527)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHH
Confidence 44444445677777777777777777777777778888888888888888777765 22223335555555554
Q ss_pred H
Q 001664 688 A 688 (1035)
Q Consensus 688 ~ 688 (1035)
.
T Consensus 525 q 525 (527)
T PF15066_consen 525 Q 525 (527)
T ss_pred h
Confidence 3
No 171
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.43 E-value=0.27 Score=58.38 Aligned_cols=30 Identities=33% Similarity=0.345 Sum_probs=25.8
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCcccccc
Q 001664 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (1035)
Q Consensus 70 ~plV~~~l~G~n~tI~aYGqTGSGKTyTm~ 99 (1035)
...+..++..-++.|+.-|+||||||+||+
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 345667788899999999999999999994
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.40 E-value=11 Score=44.12 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 528 ALRHHFGKKIMELEEEKRIVQQERDRLL 555 (1035)
Q Consensus 528 ~~k~~ye~kl~eLEeei~~LqkErd~Ll 555 (1035)
..++-.+.++.+++.++.++++|...+.
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555555554444444
No 173
>PRK05642 DNA replication initiation factor; Validated
Probab=87.26 E-value=0.29 Score=53.40 Aligned_cols=45 Identities=22% Similarity=0.508 Sum_probs=28.5
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhc---CC-CccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ---GY-NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~---G~-n~tI~aYGqTGSGKTyTm 98 (1035)
..|+||..+.. + +.. +...+....+ ++ ...++-||++|+||||-+
T Consensus 14 ~~~tfdnF~~~--~-~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYPG--A-NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCcC--C-hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHH
Confidence 46899998832 2 222 2333333322 22 246789999999999998
No 174
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.16 E-value=32 Score=44.18 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccc-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 499 TMDKELNELNKRLEQKESEMKLFGDID-TEALR--HHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 499 ~l~~El~eL~kqLe~kE~~~k~~~~~d-~~~~k--~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
=++.++.++.++++..|..+..+.... ..... .-.+.++.+|+.+....+.++......+..+
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888887776653110 00000 1134778888888888887777766665554
No 175
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=87.16 E-value=37 Score=41.32 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001664 585 AQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFER 664 (1035)
Q Consensus 585 ~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei 664 (1035)
.++.+||-+ ..-|+|.+...|.+.+.-++.|+++.+.||..+-+- --++..--..-.-|+++|+++..-+..|+
T Consensus 181 aevSeLKLk---ltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~e---rlqye~klkstk~e~a~L~Eq~~eK~~e~ 254 (861)
T KOG1899|consen 181 AEVSELKLK---LTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQE---RLQYETKLKSTKGEMAPLREQRSEKNDEE 254 (861)
T ss_pred HHHHHhHHH---HHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHhhcccccchhhhHHHHHhhhhhHH
Confidence 344444433 234667777788888888888888887777743322 22222211222346777777777666665
Q ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 665 HKLEA-----------LNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1035)
Q Consensus 665 ~~L~~-----------~~~~q~~vL~rK~eE~~a~~krLke~le~ 698 (1035)
-+|.. .+.-+.+-|+.-++++.+++..-....+.
T Consensus 255 ~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~ 299 (861)
T KOG1899|consen 255 MRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIES 299 (861)
T ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHH
Confidence 55443 34455667777788877777554444443
No 176
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.05 E-value=46 Score=35.53 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=80.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhH
Q 001664 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (1035)
Q Consensus 497 q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ 576 (1035)
-..|..++.++.+..+..+..|..+. .+...|.+-+..++.|+..|...+...+..+ ..-...
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~------------~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK-----~~L~~~ 91 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEIS------------QENKRLSEPLKKAEEEVEELRKQLKNYEKDK-----QSLQNL 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 34555666666665555555443332 3445555666666666667766666542111 111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (1035)
Q Consensus 577 e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~ 656 (1035)
+.++..++.+|.+|+-+.. -++.+...++.|-.++...-...+.-+ ..+...-..-.++.+..|...
T Consensus 92 k~rl~~~ek~l~~Lk~e~e----------vL~qr~~kle~ErdeL~~kf~~~i~ev---qQk~~~kn~lLEkKl~~l~~~ 158 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHE----------VLEQRFEKLEQERDELYRKFESAIQEV---QQKTGLKNLLLEKKLQALSEQ 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4566666766666664433 234444455555555554444433222 234444556778888888888
Q ss_pred hhhhHHHHHHHHH
Q 001664 657 GRKNEFERHKLEA 669 (1035)
Q Consensus 657 ~rK~e~ei~~L~~ 669 (1035)
+.+++.++..+-+
T Consensus 159 lE~keaqL~evl~ 171 (201)
T PF13851_consen 159 LEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877665
No 177
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.00 E-value=0.2 Score=59.74 Aligned_cols=49 Identities=22% Similarity=0.391 Sum_probs=31.8
Q ss_pred CeeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 45 ~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
+..|+||..+.. .+ +...|..+ ..++.. -..||. +|-||++|+||||.+
T Consensus 99 ~~~~tFdnFv~g-~~-n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 99 NPDYTFENFVVG-PG-NSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCCcccccccC-Cc-hHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 357999988843 23 44455443 233332 123665 899999999999998
No 178
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.91 E-value=37 Score=34.25 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=48.8
Q ss_pred HHHHHHHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 798 IASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLN 877 (1035)
Q Consensus 798 i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~ 877 (1035)
+..|+..+......+.+..+.+.+.+++. ....-+..-+..|-..+..+...+......|.++..+..
T Consensus 44 ~~~lE~eld~~~~~l~~~k~~lee~~~~~------------~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 44 NQQLEEELDKLEEQLKEAKEKLEESEKRK------------SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455555555555555555555554322 111123333444455555555666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 878 DLVALLKQSEAQRKELVKQQRMREQA 903 (1035)
Q Consensus 878 el~~~l~~~~~~~~~l~~~~~~~e~~ 903 (1035)
.+++....++.+...+...+...+.+
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666666666655555555444443
No 179
>PRK08727 hypothetical protein; Validated
Probab=86.76 E-value=0.27 Score=53.56 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=26.9
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCC-ccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n-~tI~aYGqTGSGKTyTm 98 (1035)
..|+||..+... + + .+. .+..+..|+. -.|+-||++||||||.+
T Consensus 14 ~~~~f~~f~~~~-~-n--~~~-----~~~~~~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIAAP-D-G--LLA-----QLQALAAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccCCc-H-H--HHH-----HHHHHHhccCCCeEEEECCCCCCHHHHH
Confidence 457899877432 2 1 111 1122222433 35999999999999998
No 180
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.31 E-value=35 Score=38.95 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001664 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGR 658 (1035)
Q Consensus 607 ~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~r 658 (1035)
.+.++..+...|.....++.++...+.+--....+.+---.+||..|+.+.+
T Consensus 230 ~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3344455555555555555555554444444444444444455555555443
No 181
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.20 E-value=43 Score=42.66 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 670 LNQRQKMVLQRKTEEAAIATKRLKE 694 (1035)
Q Consensus 670 ~~~~q~~vL~rK~eE~~a~~krLke 694 (1035)
+++.-+.+|+...++....++.+|.
T Consensus 686 Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 686 QKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566788877777777666654
No 182
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.16 E-value=8.8 Score=42.01 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001664 535 KKIMELEEEKRIVQQERDRLLAEIENLA 562 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~ 562 (1035)
.||.+||.++.+|.+|+..-.-.|.+++
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlE 45 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLE 45 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5677778888888777766666666653
No 183
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=0.83 Score=53.21 Aligned_cols=27 Identities=33% Similarity=0.653 Sum_probs=19.8
Q ss_pred hHHHhhcCC-CccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~-n~tI~aYGqTGSGKTyTm 98 (1035)
++..++.|. ...++.||.||||||.|+
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 344445444 444999999999999987
No 184
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.67 E-value=0.83 Score=54.74 Aligned_cols=48 Identities=27% Similarity=0.389 Sum_probs=29.8
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.|+||..+.. .+ +...|.. +..++..--..|| .+|-||++|+||||.|
T Consensus 111 ~~tFdnFv~g-~~-n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVIG-SS-NEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccCC-Cc-HHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 5999997743 33 3444432 3333332111244 4788999999999998
No 185
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.28 E-value=0.35 Score=56.57 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=31.1
Q ss_pred CeeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 45 ~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
+..|+||...... + +...|. +..-|.....+.--.||-||++|+||||-|
T Consensus 81 ~~~ytFdnFv~g~-~-N~~A~a--a~~~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 81 NPKYTFDNFVVGP-S-NRLAYA--AAKAVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCCchhheeeCC-c-hHHHHH--HHHHHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 3579999887433 3 333332 222233333333446888999999999999
No 186
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.22 E-value=0.33 Score=58.14 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=29.5
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|+||..... .. +...|.. +..+...--..|| .+|-||++|+||||.+
T Consensus 117 ~~~tfd~fv~g-~~-n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 117 PKYTFDNFVVG-KS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCcccccccC-CC-cHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 57899885532 22 3334433 3333333212344 4788999999999998
No 187
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=85.19 E-value=1.1e+02 Score=38.35 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001664 678 LQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALA 757 (1035)
Q Consensus 678 L~rK~eE~~a~~krLke~le~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~Wl~~ElE~~~~~~e~~~~~e~l~e~R~~l~ 757 (1035)
..|+++++....+.|+...+.-+......+... .++-....+-.-.++.+.+..+..=+++-.|.+..
T Consensus 428 ~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~g------------sA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~ 495 (698)
T KOG0978|consen 428 AERQIRQVEELSEELQKKEKNFKCLLSEMETIG------------SAFEDMQEQNQKLLQELREKDDKNFKLMSERIKAN 495 (698)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666777677777666655553333222111 12222233333344678888888888888888888
Q ss_pred HHHHHHHh
Q 001664 758 DELTILKQ 765 (1035)
Q Consensus 758 ~El~~Lk~ 765 (1035)
+....|+.
T Consensus 496 q~~k~L~~ 503 (698)
T KOG0978|consen 496 QKHKLLRE 503 (698)
T ss_pred HHHHHHHH
Confidence 88877776
No 188
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.12 E-value=0.4 Score=52.29 Aligned_cols=46 Identities=13% Similarity=0.340 Sum_probs=29.0
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|+||..+.. . +...+.. +..++. ......++-||++|+||||.+
T Consensus 17 ~~~~fd~f~~~--~-n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 17 DDETFASFYPG--D-NDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CcCCccccccC--c-cHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 56889877743 3 3344432 222221 223357899999999999998
No 189
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.02 E-value=27 Score=38.09 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 537 IMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
|.++..++..|..||....++|..+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555554443
No 190
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=84.96 E-value=0.39 Score=49.10 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=22.0
Q ss_pred chhhHHHhhcC-CCccEEeeccCCCCccccc
Q 001664 69 VAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 69 v~plV~~~l~G-~n~tI~aYGqTGSGKTyTm 98 (1035)
+..+++.+-.+ .+..++..|+||||||++|
T Consensus 12 i~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~ 42 (184)
T PF04851_consen 12 IARIINSLENKKEERRVLLNAPTGSGKTIIA 42 (184)
T ss_dssp HHHHHHHHHTTSGCSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCcChhh
Confidence 44555555544 4666777899999999999
No 191
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.78 E-value=42 Score=37.01 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 637 EQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 637 ~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
.+.+.......+|-.+|..+.+..+.++..|..
T Consensus 64 ~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~e 96 (246)
T PF00769_consen 64 QRLEEEAEMQEEEKEQLEQELREAEAEIARLEE 96 (246)
T ss_dssp HHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444555555555555555554
No 192
>PRK11281 hypothetical protein; Provisional
Probab=84.05 E-value=1.7e+02 Score=39.33 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001664 862 LWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (1035)
Q Consensus 862 ~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 913 (1035)
+.++-..|.+...+++.+..+..+.+.+.+.+....+...++++.+--+...
T Consensus 287 N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l 338 (1113)
T PRK11281 287 NLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLL 338 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 4455566777777788888777778888888776666666677665555444
No 193
>PRK12377 putative replication protein; Provisional
Probab=84.02 E-value=0.41 Score=52.68 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=32.0
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..+||........ +..++.. +..++..+..+. ..++-||++|+||||.+
T Consensus 70 ~~tFdnf~~~~~~-~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 70 KCSFANYQVQNDG-QRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCcCCcccCChh-HHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHH
Confidence 3478776543222 3334443 556666666554 46788999999999998
No 194
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=83.85 E-value=1.2e+02 Score=37.61 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001664 589 ELKKKQESQVELLKQKHKSDEAAKRLQAEIQS 620 (1035)
Q Consensus 589 ~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~ 620 (1035)
+|+++-.+-.++.+.+..-+-++..|...+..
T Consensus 385 eLqkks~eleEmtk~k~~ke~eleeL~~~L~e 416 (786)
T PF05483_consen 385 ELQKKSSELEEMTKQKNNKEVELEELKKILAE 416 (786)
T ss_pred HHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444445555566666666666666555544
No 195
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.83 E-value=30 Score=37.69 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLK 602 (1035)
Q Consensus 536 kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k 602 (1035)
.|.++..+...+++=+..+..+++.++. -++.|.+++.++..|..+...|.+-++
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~------------ee~~L~e~~kE~~~L~~Er~~h~eeLr 56 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLEN------------EEKCLEEYRKEMEELLQERMAHVEELR 56 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777788877776521 135677777777777766666555444
No 196
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=83.73 E-value=92 Score=36.02 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=33.5
Q ss_pred HhhHHHHHHHHHhhhhccCCCC-CcccCCCChhhhhhhccCC-CCceeEEEeecCCCCCCHHHHHHHHHHHHH
Q 001664 292 RGLLALGNVISALGDEKKRREG-VHVPYRDSKLTRLLQDSLG-GNSKTVMIACISPADINAEESLNTLKYANR 362 (1035)
Q Consensus 292 ~SL~aLg~VI~aL~~~~~~~~~-~~vPyRdSkLTrLLqdsLg-Gns~t~mI~~vSP~~~~~~ETl~TL~fa~r 362 (1035)
-+.+.||-||..++|.-..+-+ .|. + .|| -.-.|.+|++|-.+.--..-||..|=.+++
T Consensus 7 ~~vlvLgGVIA~~gD~ig~kvGkarL--------r----lF~LRPkqTAvlvtvltG~liSA~tLailf~~~~ 67 (499)
T COG4372 7 PFVLVLGGVIAYAGDTIGKKVGKARL--------R----LFGLRPKQTAVLVTVLTGMLISAATLAILFLLNR 67 (499)
T ss_pred HHHHHHHhHHHHHhhHHHhhhhHHHH--------h----HhccCcccceeehhhhhcchhhHHHHHHHHHhhh
Confidence 3578899999999883221111 111 0 122 134677888876655444567766655543
No 197
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.57 E-value=0.49 Score=50.71 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=29.8
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|+||.... + . +...+.. +..+ +..+....|+-||++||||||..
T Consensus 10 ~~~~~~~~~~-~-~-~~~~~~~-l~~~---~~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA-G-G-NAELLAA-LRQL---AAGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc-C-C-cHHHHHH-HHHH---HhcCCCCeEEEECCCCCCHHHHH
Confidence 3578887773 2 2 2333332 2222 23566778999999999999997
No 198
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=83.16 E-value=71 Score=34.31 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHH
Q 001664 648 KELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 648 kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
-|++.|+..+||.+..+..|+.
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777666664
No 199
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=83.08 E-value=0.9 Score=52.50 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=24.2
Q ss_pred cchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 68 CVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 68 ~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
...|.+..++.--.+.|+-.|+||||||+||
T Consensus 109 g~~~~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 109 GLPPVLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CCCHHHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 3445666666555688999999999999999
No 200
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=83.02 E-value=1.2e+02 Score=38.35 Aligned_cols=141 Identities=22% Similarity=0.332 Sum_probs=75.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhcc----ccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 001664 497 QNTMDKELNELNKRLEQKESEMKLFGD----IDT---EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHT 569 (1035)
Q Consensus 497 q~~l~~El~eL~kqLe~kE~~~k~~~~----~d~---~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~ 569 (1035)
-.+|.+.|+-||.+|.+.|...+.... .+. +.+.--++.++.+.......|+.-.++|+..+++.. + ..
T Consensus 396 NaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~---~-En 471 (861)
T PF15254_consen 396 NAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK---E-EN 471 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH---H-HH
Confidence 456788999999999998876654331 111 222223566666666666677666666666666542 1 11
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 570 QKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKE 649 (1035)
Q Consensus 570 ~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kE 649 (1035)
++ +...+++-+.+|.+.+ +.-..+..+.|-..++. +..||.-+.+ . ...+||
T Consensus 472 k~----~~~~~~ekd~~l~~~k--q~~d~e~~rik~ev~ea-------l~~~k~~q~k-------------L--e~sekE 523 (861)
T PF15254_consen 472 KR----LRKMFQEKDQELLENK--QQFDIETTRIKIEVEEA-------LVNVKSLQFK-------------L--EASEKE 523 (861)
T ss_pred HH----HHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHH-------HHHHHHHhhh-------------H--HHHHhh
Confidence 12 2233333343332222 22223333333333222 2223332222 2 234566
Q ss_pred HHHHHHHhhhhHHHHHHHHH
Q 001664 650 LLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 650 i~qLk~~~rK~e~ei~~L~~ 669 (1035)
-.-|.--+|.++.||.+|..
T Consensus 524 N~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 524 NQILGITLRQRDAEIERLRE 543 (861)
T ss_pred hhHhhhHHHHHHHHHHHHHH
Confidence 66688889999999888875
No 201
>PRK06526 transposase; Provisional
Probab=83.02 E-value=0.48 Score=52.40 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=14.3
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
|+.||++|+||||.+
T Consensus 101 lll~Gp~GtGKThLa 115 (254)
T PRK06526 101 VVFLGPPGTGKTHLA 115 (254)
T ss_pred EEEEeCCCCchHHHH
Confidence 789999999999998
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=82.95 E-value=0.61 Score=45.06 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=20.4
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..+...+.......|+.+|++|+|||+++
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 34444444434557889999999999876
No 203
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.85 E-value=0.88 Score=49.72 Aligned_cols=43 Identities=35% Similarity=0.476 Sum_probs=32.5
Q ss_pred chhhHHHhhcCCCccEEeeccCCCCcccccc--CCCCCCCcccch
Q 001664 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGLREGFQTGLI 111 (1035)
Q Consensus 69 v~plV~~~l~G~n~tI~aYGqTGSGKTyTm~--G~~~~~~~~Gii 111 (1035)
+.|++..+.--.-+.|+..|+|||||++||. -++.+....|=|
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHI 159 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCce
Confidence 5677888877888899999999999999982 234455556644
No 204
>PRK08116 hypothetical protein; Validated
Probab=82.72 E-value=0.44 Score=53.12 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=33.0
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhc--CCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~--G~n~tI~aYGqTGSGKTyTm 98 (1035)
..++||.... +.. +...|.. +...++.+.. +.|..++-||++||||||.+
T Consensus 80 ~~~tFdnf~~-~~~-~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFLF-DKG-SEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred HhcchhcccC-ChH-HHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 3578887653 222 3344443 5666666544 34556999999999999998
No 205
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=82.56 E-value=1.1e+02 Score=36.20 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=71.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 570 QKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKE 649 (1035)
Q Consensus 570 ~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kE 649 (1035)
+.++-.+++..+.+-.+++.|+....+--+..+.-.|..+.++.|.+--..|+.--+.++..|+.=-.+.+.|-- -
T Consensus 256 ~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g----~ 331 (622)
T COG5185 256 QELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG----K 331 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch----H
Confidence 445555666677777777777777777777777777777778887777777777777765555444444444443 3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001664 650 LLKLKKEGRKNEFERHKLEALNQRQKMVLQR 680 (1035)
Q Consensus 650 i~qLk~~~rK~e~ei~~L~~~~~~q~~vL~r 680 (1035)
+.+|+.+..+++.||..|++...-...++.+
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4557888888888888888755555554443
No 206
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.39 E-value=1.2e+02 Score=36.47 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Q 001664 645 SREKELLKLKKEGRKNEFERHKL 667 (1035)
Q Consensus 645 ~~~kEi~qLk~~~rK~e~ei~~L 667 (1035)
..+.++.+|+.+....+.++..+
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555555555555543
No 207
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.37 E-value=0.62 Score=54.57 Aligned_cols=20 Identities=45% Similarity=0.675 Sum_probs=17.2
Q ss_pred CCCccEEeeccCCCCccccc
Q 001664 79 GYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 79 G~n~tI~aYGqTGSGKTyTm 98 (1035)
+....++-||++|+|||+++
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 45567899999999999987
No 208
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=82.14 E-value=0.65 Score=54.88 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=28.7
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|+||.... +.. +...|.. +..+...--..|| .++-||++|+||||.+
T Consensus 105 ~~~tfd~fi~-g~~-n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 105 PKYTFDNFVV-GKS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCccccccc-CCc-HHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 5789998542 222 3334433 3333333111234 4778999999999998
No 209
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.94 E-value=1e+02 Score=37.68 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001664 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1035)
Q Consensus 605 ~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~ 668 (1035)
..+|.+--+|-.||.+||=..+- .|||-..-++++|+.+++|+.+.
T Consensus 170 tsLETqKlDLmaevSeLKLklta------------------lEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTA------------------LEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHH------------------HHHHhhhHHHHHHhHHHHHHHHH
Confidence 44555555666667666655555 45555555666666666665554
No 210
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.79 E-value=74 Score=33.55 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 531 ~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
+++..+|..|++++.++..|++.+......+
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 4456777777777777777777777766665
No 211
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.79 E-value=21 Score=40.83 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 537 IMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
+..|+.+...+++|++....-+..+
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l 35 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKL 35 (314)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777776666555
No 212
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=81.75 E-value=0.59 Score=58.53 Aligned_cols=93 Identities=25% Similarity=0.418 Sum_probs=56.1
Q ss_pred EEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccch--h--HHHHHHHHHHH
Q 001664 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLI--P--QVMNALFNKIE 123 (1035)
Q Consensus 48 F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Gii--p--r~~~~LF~~i~ 123 (1035)
|....-|.|.+. |..- +..++.++-.|.... ..+|.|||||||||..-......+-|| | .....|++.+.
T Consensus 2 f~~~~~~~~~~~-Q~~a----i~~l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 2 FKLHSPFQPAGD-QPKA----IAKLVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ceeccCCCCChH-HHHH----HHHHHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 444455777665 4443 345666666664333 378999999999994322111122222 2 24566777766
Q ss_pred hhcccceEEEEeehhhhhhhHHh
Q 001664 124 TLRHQMEFQLHVSFIEILKEEVR 146 (1035)
Q Consensus 124 ~~~~~~~~~V~vS~~EIYnE~v~ 146 (1035)
..-+...+...||||..|.-+.|
T Consensus 76 ~f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 76 EFFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HhCCCCeEEEEeeecccCCcccc
Confidence 65455557889999999876643
No 213
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=81.47 E-value=0.73 Score=49.67 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=30.0
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|+||.+++. . ...++. .+..++.. .+.+..|+-||++||||||.+
T Consensus 13 ~~~~~d~f~~~--~-~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG--E-NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC--C-cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 46999998832 2 223332 23333331 234567899999999999987
No 214
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.43 E-value=0.61 Score=54.00 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=20.4
Q ss_pred hHHHhhc-CCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~-G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+..++. +...+++-||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444443 45678999999999999987
No 215
>PF13245 AAA_19: Part of AAA domain
Probab=81.31 E-value=0.81 Score=40.84 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.1
Q ss_pred HHHhhcCCCccEEeeccCCCCccccc
Q 001664 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 73 V~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
|...+. -+..++..|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 344445 3333445899999999998
No 216
>PF14992 TMCO5: TMCO5 family
Probab=81.21 E-value=98 Score=34.62 Aligned_cols=118 Identities=22% Similarity=0.294 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001664 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQ---DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEA 610 (1035)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLk---e~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~ 610 (1035)
+..+.+|+.+..+|+++-+.+-..+.++..+.+.+..++. ....+.++..+ ..|+.-...-+.+.+.-.|.+..
T Consensus 62 e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk---~~lqql~~~~~~qE~ei~kve~d 138 (280)
T PF14992_consen 62 ETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSK---NKLQQLLESCASQEKEIAKVEDD 138 (280)
T ss_pred HHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhh---hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888899988888886666665444343434332 22335555555 33332222222333322222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001664 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE 663 (1035)
Q Consensus 611 ~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~e 663 (1035)
-.++..+-.....-++++|+.. +. ...+||+..|.++.++.+..
T Consensus 139 ----~~~v~~l~eDq~~~i~klkE~L---~r--mE~ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 139 ----YQQVHQLCEDQANEIKKLKEKL---RR--MEEEKEMLLLEKELSKYQMQ 182 (280)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHhch
Confidence 1123333344444566666644 22 22267777777766665554
No 217
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=80.87 E-value=3 Score=42.08 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=19.8
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
++..+..|.| ++..|+||||||+..
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHH
Confidence 4455666766 788999999999997
No 218
>PRK07952 DNA replication protein DnaC; Validated
Probab=80.63 E-value=0.63 Score=51.10 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=30.0
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
...+||..... ...+..++.. +...++.+..|+ ..++-||.+|+||||.+
T Consensus 67 ~~~tFdnf~~~-~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRVE-CEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccCC-CchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHH
Confidence 35678775432 2223334443 333444443443 36888999999999998
No 219
>PRK10436 hypothetical protein; Provisional
Probab=80.59 E-value=0.76 Score=55.10 Aligned_cols=28 Identities=36% Similarity=0.382 Sum_probs=23.2
Q ss_pred hHHHhhcCCCccEEeeccCCCCcccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm~ 99 (1035)
.+..++..-++.|+..|+||||||+||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3455666788999999999999999993
No 220
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.33 E-value=60 Score=39.76 Aligned_cols=58 Identities=17% Similarity=0.363 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001664 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (1035)
Q Consensus 610 ~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~ 668 (1035)
.+..++.+|..|+.....+.+.++.+..+-++ -..++++|..|++++..+...+..|+
T Consensus 444 ~~ee~k~eie~L~~~l~~~~r~~~~~~~~~re-i~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 444 ELEELKREIEKLESELERFRREVRDKVRKDRE-IRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555533322222 22345555556555555555544444
No 221
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=80.25 E-value=0.9 Score=50.41 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=24.8
Q ss_pred ccccchhhHHHhhcCC---CccEEeeccCCCCccccc
Q 001664 65 FGECVAPLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 65 y~~~v~plV~~~l~G~---n~tI~aYGqTGSGKTyTm 98 (1035)
+.....+.+..++... .+.|+..|.||||||.+|
T Consensus 108 ~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 108 ESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred CchhhHHHHHHHHhhccccceEEEEECCCccccchHH
Confidence 3334445556666555 777888899999999998
No 222
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=80.09 E-value=0.73 Score=44.04 Aligned_cols=15 Identities=53% Similarity=0.618 Sum_probs=13.8
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 578999999999998
No 223
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=80.08 E-value=0.77 Score=56.64 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.2
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+..++..-++.|+..|+||||||+||
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 455666777899999999999999998
No 224
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=79.93 E-value=0.86 Score=55.12 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=22.9
Q ss_pred hHHHhhcCCCccEEeeccCCCCcccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm~ 99 (1035)
.+..++..-++.|+..|+||||||+||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455666777889999999999999993
No 225
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.33 E-value=1.3e+02 Score=35.02 Aligned_cols=26 Identities=27% Similarity=0.114 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcccc
Q 001664 895 KQQRMREQAVTIALASSASGSSWRSS 920 (1035)
Q Consensus 895 ~~~~~~e~~~~~~~~~~~~~~~~~~~ 920 (1035)
++.-+----+.++++.+++...+.|.
T Consensus 331 Ne~~~~g~s~~Va~~asas~~~~~sa 356 (552)
T KOG2129|consen 331 NEFVDFGDSVEVALHASASQKYNGSA 356 (552)
T ss_pred hhhhccCCceeeecccchhhhCCCCC
Confidence 33333333456777777776666653
No 226
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=79.02 E-value=0.71 Score=44.69 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=13.3
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
+.+++.||++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999998
No 227
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.95 E-value=1.1e+02 Score=34.00 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 536 KIMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 536 kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
.+..+...+..+..+++.|..++...
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666554
No 228
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.87 E-value=1.3e+02 Score=34.51 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001664 570 QKMQDGHTLKLKALEAQILELKKKQES 596 (1035)
Q Consensus 570 ~KLke~~e~kL~eLE~el~~Lkkk~~~ 596 (1035)
..+......+...|+.++..|++-..+
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344455566667777777777655554
No 229
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=78.82 E-value=0.8 Score=48.55 Aligned_cols=18 Identities=50% Similarity=0.695 Sum_probs=16.1
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
++.|+-.|+||||||+|+
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367888999999999998
No 230
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=78.80 E-value=1 Score=52.43 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=20.7
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
++++.++. .++.|+..|+||||||+||
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 34444443 5677889999999999998
No 231
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=78.57 E-value=1.4e+02 Score=34.94 Aligned_cols=41 Identities=32% Similarity=0.392 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 722 EKSLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTI 762 (1035)
Q Consensus 722 ~~~~~~Wl~~ElE~~~-~~~e~~~~~e~l~e~R~~l~~El~~ 762 (1035)
..+++.||..--|+=+ -..--+-..+.|+...+.+++.|.+
T Consensus 334 P~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 334 PLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3579999865444432 2333344456666666666666654
No 232
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=78.20 E-value=1.9e+02 Score=36.04 Aligned_cols=14 Identities=14% Similarity=0.508 Sum_probs=8.6
Q ss_pred hhhhhhhHHhhhcC
Q 001664 137 FIEILKEEVRDLLD 150 (1035)
Q Consensus 137 ~~EIYnE~v~DLL~ 150 (1035)
||-.||+.++|++.
T Consensus 24 ~yA~~n~~f~d~f~ 37 (582)
T PF09731_consen 24 YYAKQNDNFRDFFE 37 (582)
T ss_pred HHhhcChHHHHHHH
Confidence 44456777777763
No 233
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=77.95 E-value=1.1 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.2
Q ss_pred HHhhcCCCccEEeeccCCCCccccc
Q 001664 74 DGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 74 ~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..++.--++.|+..|+||||||+||
T Consensus 127 ~~~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 127 IDAIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHHHhccCCEEEEECCCCCCHHHHH
Confidence 3344445789999999999999998
No 234
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=77.87 E-value=1.9e+02 Score=36.03 Aligned_cols=160 Identities=23% Similarity=0.321 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHH
Q 001664 534 GKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKMQDGHTLKLKALEAQILELK-KKQESQVELLKQKHKSDE 609 (1035)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~~~~~---~~~~~~KLke~~e~kL~eLE~el~~Lk-kk~~~~~~l~k~k~k~e~ 609 (1035)
++......+-......+.+.|..+|..+... +...-..|. ..|+.--..+..|. .+...-.++-+.+.....
T Consensus 274 eE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le----~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~ 349 (786)
T PF05483_consen 274 EEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALE----EDLQQATKTLIQLTEEKEAQMEELNKAKAQHSF 349 (786)
T ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333444455566777777777754110 011112222 22222222233333 222233445556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHH-----HHHHHH
Q 001664 610 AAKRLQAEIQSIKAQKVQLQNKIKQ---EAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA-LNQRQ-----KMVLQR 680 (1035)
Q Consensus 610 ~~~~L~~ei~~mK~~kv~L~kkmke---e~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~-~~~~q-----~~vL~r 680 (1035)
.+..++..|..|+....-.+.+.+. ++.-....=..+..|+....+....++.++..|.. ....| +..+-+
T Consensus 350 ~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~ek 429 (786)
T PF05483_consen 350 VVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEK 429 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665554443333322 22222222222333333333344444444444433 12222 123444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001664 681 KTEEAAIATKRLKELLE 697 (1035)
Q Consensus 681 K~eE~~a~~krLke~le 697 (1035)
=.+++.+....|...|.
T Consensus 430 i~E~lq~~eqel~~llq 446 (786)
T PF05483_consen 430 IAEELQGTEQELTGLLQ 446 (786)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555554
No 235
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=77.59 E-value=1.8e+02 Score=35.42 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=55.0
Q ss_pred hHHHhHhhHHHHHHHHHhhhhccCCCCCcccCCCChhhhhhh-ccCCCCceeEEEeecCCCCCCHHHHHHHHHHHHHh--
Q 001664 287 GIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQ-DSLGGNSKTVMIACISPADINAEESLNTLKYANRA-- 363 (1035)
Q Consensus 287 ~~~IN~SL~aLg~VI~aL~~~~~~~~~~~vPyRdSkLTrLLq-dsLgGns~t~mI~~vSP~~~~~~ETl~TL~fa~ra-- 363 (1035)
+-.|+.||-.|.++...++.- =.+-|-.+-. -+.|..+-|.+ ++|.. .+.+ |.|-.||
T Consensus 212 ~~c~~~sl~~l~~~~~k~a~f-----------~~nnld~~~~~~~y~~~~~~~~---~~~~~---~~~~--~~~~~~a~~ 272 (518)
T PF10212_consen 212 NECILSSLVSLTNGTGKIAAF-----------FSNNLDFFTSSSGYGPKGATTF---TNPLS---AECM--LQYKKRAAA 272 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHH-----------HhcchHHhhcccccCCCccccc---CCccc---hHHH--HHHHHHHHH
Confidence 346778888887777766542 1222222211 12233333433 34532 1232 5554443
Q ss_pred --hcccCccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001664 364 --RNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLC 425 (1035)
Q Consensus 364 --r~IknkPvvN~d~~~~ei~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~e~~~L~ 425 (1035)
..+ .+|.....|....+..-+ |-.--.+-. .+-...++...++|+.|+.+++...
T Consensus 273 ~~~~~-~~p~~~svpy~~a~~n~r--il~sstes~----e~L~qqV~qs~EKIa~LEqEKEHw~ 329 (518)
T PF10212_consen 273 YMSSL-KKPCPESVPYEEALANRR--ILLSSTESR----EGLAQQVQQSQEKIAKLEQEKEHWM 329 (518)
T ss_pred HHHHh-cCCCCccCChHHHHhhhH--HHhhhHHhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 467777777765553211 110000000 0013567777888888888877644
No 236
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.58 E-value=33 Score=36.80 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIEN 560 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~ 560 (1035)
+.+++.+.++.+..|+.|.+.|.+++..
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666654
No 237
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.46 E-value=78 Score=31.32 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 726 QKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTIL 763 (1035)
Q Consensus 726 ~~Wl~~ElE~~~~~~e~~~~~e~l~e~R~~l~~El~~L 763 (1035)
.+|..++-..-..+.++...++.|...++.|-..|..|
T Consensus 94 ~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 94 ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45777777777777888888888888888877777543
No 238
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.27 E-value=69 Score=33.86 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
...++..|..++..+..+...+...++..
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777666666666666655
No 239
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.27 E-value=1e+02 Score=32.68 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 614 LQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 614 L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
-++++-++=.++..-++-+++...+........++.+-....++-+...++..|+.
T Consensus 55 ~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 55 TEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556666666666666666666666666666666666666666666554
No 240
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=77.15 E-value=0.99 Score=48.70 Aligned_cols=17 Identities=41% Similarity=0.729 Sum_probs=14.2
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
--+..+|.||||||||+
T Consensus 24 ~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTV 40 (229)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34556799999999999
No 241
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=76.98 E-value=0.99 Score=43.04 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=15.2
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 46788999999999998
No 242
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.84 E-value=24 Score=42.14 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=18.4
Q ss_pred ccccccCcccchhhhhhhccccccccccccc
Q 001664 945 TPGIVNGSVRESAAFVDQTRKMVPVGHLSMK 975 (1035)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1035)
+||-.-+.+-...+|.+ ..-.+|++.+++.
T Consensus 158 ~p~~~~~~~~~~~~~~~-g~~~~~~~~~~yq 187 (475)
T PRK13729 158 FPPQGSVAVPPPTAFYP-GNGVTPPPQVTYQ 187 (475)
T ss_pred cCcccccCCCCCCCcCC-CCCCCCCcccccc
Confidence 45544445666677776 4566777777654
No 243
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.70 E-value=39 Score=41.24 Aligned_cols=29 Identities=14% Similarity=0.391 Sum_probs=15.0
Q ss_pred cchhHHHHHHHHHHHhhcccceEEEEeeh
Q 001664 109 GLIPQVMNALFNKIETLRHQMEFQLHVSF 137 (1035)
Q Consensus 109 Giipr~~~~LF~~i~~~~~~~~~~V~vS~ 137 (1035)
|.|.++...|=..+....-+++..|.=+|
T Consensus 164 ~av~~~~reIee~L~~agldyDl~vr~~~ 192 (652)
T COG2433 164 GAVKRVVREIEEKLDEAGLDYDLEVRESY 192 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeecc
Confidence 66666666666666553333333333333
No 244
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.63 E-value=74 Score=35.05 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhh
Q 001664 618 IQSIKAQKVQLQNKIKQEAEQFRQ-----WKASREKELLKLKKEGRK 659 (1035)
Q Consensus 618 i~~mK~~kv~L~kkmkee~~~~r~-----~~~~~~kEi~qLk~~~rK 659 (1035)
|...+...+-+|.+|-++++.|=. ....|.+-|..|+..+.+
T Consensus 96 ~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 96 IEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhc
Confidence 334444455668888888888766 333444445545444433
No 245
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=76.58 E-value=2.8e+02 Score=37.26 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 001664 862 LWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASG 914 (1035)
Q Consensus 862 ~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 914 (1035)
+.++-.+|.....+++.+..+..+.+.+...+...++..++++..+--+...|
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg 319 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALG 319 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 44455667777777888887777788888887777777777776666555553
No 246
>PF12846 AAA_10: AAA-like domain
Probab=75.65 E-value=1.1 Score=49.78 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=16.1
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
|..++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 567888999999999998
No 247
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=75.24 E-value=1.9e+02 Score=34.54 Aligned_cols=94 Identities=10% Similarity=0.123 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhh
Q 001664 500 MDKELNELNKRLEQKESEMKLFGDI-DTEALRH---HFGKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKM 572 (1035)
Q Consensus 500 l~~El~eL~kqLe~kE~~~k~~~~~-d~~~~k~---~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~---~~~~~~KL 572 (1035)
++.++.++..+|+..|..+..|... ....... ....++.+|+.+....+.++......+...... .+-.....
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPI 255 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChH
Confidence 4567777777777777766655311 0000000 112567777777777777766555554332100 00001112
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 001664 573 QDGHTLKLKALEAQILELKKK 593 (1035)
Q Consensus 573 ke~~e~kL~eLE~el~~Lkkk 593 (1035)
-..++.+|.+++.++..|...
T Consensus 256 i~~l~~~l~~le~~l~~l~~~ 276 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQR 276 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 234567777777777776543
No 248
>PRK06835 DNA replication protein DnaC; Validated
Probab=75.12 E-value=1.4 Score=50.48 Aligned_cols=28 Identities=29% Similarity=0.587 Sum_probs=21.5
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
...|+.+-.+. ..|+-||+||+||||.+
T Consensus 173 ~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 173 KNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 34666655444 66999999999999987
No 249
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=74.94 E-value=1.5 Score=48.72 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=21.4
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+..++..-.+.|+-.|+||||||+||
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 345556555677888999999999998
No 250
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=74.85 E-value=1.6e+02 Score=33.64 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhhHHHHHHHHHHHH
Q 001664 617 EIQSIKAQKVQLQNKIKQEAEQFRQWKASRE----------KELLKLKKEGRKNEFERHKLEALNQ 672 (1035)
Q Consensus 617 ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~----------kEi~qLk~~~rK~e~ei~~L~~~~~ 672 (1035)
.+..|..+-..|-.++.--+++|.+...... +|+..+-++.++-+.|-..+...+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888888776543 4555555555555555444444333
No 251
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=74.82 E-value=1.6 Score=46.25 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.5
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|..++.+.+..++..|+.||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 3456666666656667899999999998
No 252
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.73 E-value=2.1e+02 Score=34.91 Aligned_cols=195 Identities=17% Similarity=0.200 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHH
Q 001664 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQI---LELKKKQESQVELLKQKHKSDEAAK 612 (1035)
Q Consensus 536 kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el---~~Lkkk~~~~~~l~k~k~k~e~~~~ 612 (1035)
++.-|...+.++++++|.|...+.++....+ -.-+.+.+ +++.++..++ .+++++.....++++.+-......+
T Consensus 340 ~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~--R~~~s~A~-~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~~~s~~~r 416 (852)
T KOG4787|consen 340 QVQHLNTKIERLEKTNDHLNKKIVELEADCK--RGGVTSAH-SKAGEFKLTPEMEKDMSKMIVTISELERKNLELTTQVK 416 (852)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhc--ccchHHHH-HHhhhhhcChHhHhHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3555667788888999999988888743221 11111112 4444444332 3444555555555555555554555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 001664 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA----LNQRQKMVLQRKTEEAAIA 688 (1035)
Q Consensus 613 ~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~----~~~~q~~vL~rK~eE~~a~ 688 (1035)
.|+.-.+ ++++ |-. +-.--++++++-+.+|..|+- +.-.+..-|+.+.+.|.-.
T Consensus 417 ~L~~~~~------------~~~~---~~~-------~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~ 474 (852)
T KOG4787|consen 417 QLETKVT------------PKPN---FVV-------PSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQ 474 (852)
T ss_pred HHhhccc------------cchh---hcC-------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 4443221 1111 000 111134445555666666665 3444555577777776654
Q ss_pred HHHHHHHHHH-HhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 689 TKRLKELLEA-RKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQ 765 (1035)
Q Consensus 689 ~krLke~le~-~k~~~~~~e~~~~~~~~~~~~~~~~~~~~Wl~~ElE~~~-~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1035)
=+=|..-|-+ .+.+-+..+- +. ......+-|.+|+-+-. -..+.-..++.+.--+++++.++.-|.+
T Consensus 475 CRIL~~RL~K~~R~q~R~~~~---------~~-~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~ 543 (852)
T KOG4787|consen 475 CRILNERLNKLHRKQVRDGEI---------QY-SDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAA 543 (852)
T ss_pred hHHHHHHHhHHHHHHHhhhhh---------cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHH
Confidence 4444443321 1111111111 11 11122333555554432 2234445555566667777777777765
No 253
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=74.52 E-value=26 Score=39.67 Aligned_cols=112 Identities=23% Similarity=0.327 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhH
Q 001664 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (1035)
Q Consensus 497 q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~ 576 (1035)
+..+..-+...++.|..+|..+.... .+...++.+...++...+.....++.......++...|.++.
T Consensus 185 ~~~~~~~ilq~d~~L~~~ek~~~~~~------------~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekm 252 (297)
T PF02841_consen 185 KESMENSILQADQQLTEKEKEIEEEQ------------AKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKM 252 (297)
T ss_dssp CHHHHHHHHHH-TTS-HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001664 577 TLKLKALEAQILEL-KKKQESQVELLKQKHKSDEAAKRLQAEIQSIK 622 (1035)
Q Consensus 577 e~kL~eLE~el~~L-kkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK 622 (1035)
+..-..+..+...+ ..+..++.+++ +.....++..|+.||.+|+
T Consensus 253 e~e~~~~~~e~e~~l~~k~~eq~~~l--~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 253 EEEREQLLQEQERLLEQKLQEQEELL--KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
No 254
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.07 E-value=38 Score=36.32 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001664 577 TLKLKALEAQILELKKKQE 595 (1035)
Q Consensus 577 e~kL~eLE~el~~Lkkk~~ 595 (1035)
+.++.+||.|+.+|+.+..
T Consensus 92 ~~rlp~le~el~~l~~~l~ 110 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLN 110 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566677777777764443
No 255
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=74.02 E-value=2.5 Score=46.27 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=29.0
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhcCCCcc-EEeeccCCCCccccc
Q 001664 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT-VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~t-I~aYGqTGSGKTyTm 98 (1035)
...+|...+-+. +...+.. -...++.|..+. |+-||..|||||.++
T Consensus 23 ~~~l~~L~Gie~-Qk~~l~~-----Nt~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 23 PIRLDDLIGIER-QKEALIE-----NTEQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCCHHHhcCHHH-HHHHHHH-----HHHHHHcCCCCcceEEecCCCCCHHHHH
Confidence 345566665432 2222222 235677887654 777999999998887
No 256
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.97 E-value=2.7e+02 Score=35.45 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 001664 525 DTEALRHHFGKKIMELEEEKRIV 547 (1035)
Q Consensus 525 d~~~~k~~ye~kl~eLEeei~~L 547 (1035)
.+..+..+|-+-..++|--|+++
T Consensus 612 ~k~~lD~~f~kL~kele~~i~k~ 634 (970)
T KOG0946|consen 612 TKLALDFEFKKLFKELEGLIAKL 634 (970)
T ss_pred chhhhhHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666655
No 257
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.97 E-value=3.8e+02 Score=37.10 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=22.6
Q ss_pred CcccCCCC--hhhhhhhccCCCCceeEEEeecCCCCCCHH
Q 001664 314 VHVPYRDS--KLTRLLQDSLGGNSKTVMIACISPADINAE 351 (1035)
Q Consensus 314 ~~vPyRdS--kLTrLLqdsLgGns~t~mI~~vSP~~~~~~ 351 (1035)
+.++|+-. .|+.+|.++|.+-+... |..++-+..+++
T Consensus 195 P~Ls~~~~~~~l~~~l~~~l~~l~~~~-i~~l~e~~~~~~ 233 (1353)
T TIGR02680 195 PQLSKKPDEGVLSDALTEALPPLDDDE-LTDVADALEQLD 233 (1353)
T ss_pred CCCCCCCChHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHH
Confidence 35676666 58999999997755433 444444333333
No 258
>PRK08181 transposase; Validated
Probab=72.81 E-value=1.4 Score=49.09 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=16.2
Q ss_pred cCCCccEEeeccCCCCccccc
Q 001664 78 QGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 78 ~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.|.| |+-||++|+||||-+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa 123 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLA 123 (269)
T ss_pred cCce--EEEEecCCCcHHHHH
Confidence 4554 889999999999998
No 259
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=72.65 E-value=1.8 Score=49.14 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=21.1
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..++..++.+ .+.|+-.|+||||||++|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455555553 467888999999999998
No 260
>PRK00106 hypothetical protein; Provisional
Probab=72.51 E-value=2.3e+02 Score=34.98 Aligned_cols=121 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 573 QDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLK 652 (1035)
Q Consensus 573 ke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~q 652 (1035)
+..-++-+.+-+.+-..+.++....++-.+.+.+.+.+ .++...+....+..+.-+.+..+....-..++..+.+
T Consensus 41 ~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEae-----eEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~Lek 115 (535)
T PRK00106 41 EQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAK-----EEARKYREEIEQEFKSERQELKQIESRLTERATSLDR 115 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1035)
Q Consensus 653 Lk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~ 698 (1035)
-.+.+.+++.++...+..-..+..-|.++.+++..........|+.
T Consensus 116 Ree~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~ 161 (535)
T PRK00106 116 KDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELER 161 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 261
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=72.40 E-value=2.5 Score=52.41 Aligned_cols=19 Identities=47% Similarity=0.665 Sum_probs=16.0
Q ss_pred CCccEEeeccCCCCccccc
Q 001664 80 YNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 80 ~n~tI~aYGqTGSGKTyTm 98 (1035)
-|-.|+.+|+||||||+-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3556788899999999987
No 262
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.36 E-value=1.6e+02 Score=32.49 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 646 REKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 646 ~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
.+.+|.+|.....+++.|...|+.
T Consensus 87 ~~~~i~~l~ee~~~ke~Ea~~lq~ 110 (246)
T PF00769_consen 87 AEAEIARLEEESERKEEEAEELQE 110 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666555553
No 263
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=72.31 E-value=1.9 Score=51.59 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=30.5
Q ss_pred CeeEEeceEeCCCCCCCcccccccchhhHHHh--hcC--CCccEEeeccCCCCccccc
Q 001664 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGL--FQG--YNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 45 ~~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~--l~G--~n~tI~aYGqTGSGKTyTm 98 (1035)
+..|+||..+.. .+ +...|.. +..+.... ..| ||. +|-||++|+||||.+
T Consensus 105 ~~~~tFdnFv~g-~~-N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 105 DPLMTFANFLVT-PE-NDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred CccccccceeeC-Cc-HHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 357999988843 23 3333332 33343322 223 443 677999999999998
No 264
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=72.12 E-value=3e+02 Score=35.48 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 608 DEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQ---FRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (1035)
Q Consensus 608 e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~---~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE 684 (1035)
+.+...+.+-+.++..-++.|.+|..+=.++ .++..-..++++..|...+.+.+.+...+++.++-+..+|..--.|
T Consensus 423 e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~E 502 (980)
T KOG0980|consen 423 ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQE 502 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333344444444444444444443332222 2223335667777777777777777777666555555544444444
Q ss_pred HHHHHHHH
Q 001664 685 AAIATKRL 692 (1035)
Q Consensus 685 ~~a~~krL 692 (1035)
+.....++
T Consensus 503 l~~l~~e~ 510 (980)
T KOG0980|consen 503 LALLLIEL 510 (980)
T ss_pred HHHHHHHH
Confidence 44333333
No 265
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.05 E-value=2.9e+02 Score=35.38 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=11.2
Q ss_pred cCCCCCceEEecCCCcEE
Q 001664 169 ISGRPPIQIRESSNGVIT 186 (1035)
Q Consensus 169 ~~~~~~l~ire~~~~~~~ 186 (1035)
++..|++-+--..+|.++
T Consensus 293 l~~~p~~~via~~~G~l~ 310 (717)
T PF10168_consen 293 LPSLPPVLVIATSNGKLY 310 (717)
T ss_pred ecCCCCEEEEEecCCeEE
Confidence 344566666666677665
No 266
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=71.81 E-value=1.6e+02 Score=32.21 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 606 KSDEAAKRLQAEIQSIKAQKVQLQ----------NKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 606 k~e~~~~~L~~ei~~mK~~kv~L~----------kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
..+.++..|...+...+..--..- .-+..+.++...--...+..+..|..+++.-.+.+..|+.
T Consensus 89 ~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 89 SDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 344455555555544444433332 2234445555555555666666666666666666666665
No 267
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=71.75 E-value=43 Score=35.45 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 647 EKELLKLKKEGRKNEFERHKLEAL---NQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1035)
Q Consensus 647 ~kEi~qLk~~~rK~e~ei~~L~~~---~~~q~~vL~rK~eE~~a~~krLke~le~ 698 (1035)
+.++.+|+.+++-+..-+..|+.. -+-+-+++..|.+.+...++.|=+-+-.
T Consensus 129 ~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 129 EEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333332 1234455666666666666665444333
No 268
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=70.75 E-value=3.2e+02 Score=35.25 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Q 001664 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQE-----------SQVEL 600 (1035)
Q Consensus 532 ~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~-----------~~~~l 600 (1035)
|++.-+.++-.+++....|.+..+...-. .+...-.|++.+++.+|.++..++..+..+.. --.+|
T Consensus 49 hld~aLkec~~qlr~~ree~eq~i~~~~~---~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l 125 (769)
T PF05911_consen 49 HLDGALKECMRQLRQVREEQEQKIHEAVA---KKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAEL 125 (769)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45566677777777776666555443322 12234446666777777777776665554433 23445
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001664 601 LKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (1035)
Q Consensus 601 ~k~k~k~e~~~~~L~~ei~~mK~~kv~L 628 (1035)
.+.|...+.++..|...++.+.+.-..|
T Consensus 126 ~~~~~~~e~~~~~l~~~l~~~eken~~L 153 (769)
T PF05911_consen 126 SEEKSQAEAEIEDLMARLESTEKENSSL 153 (769)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665555443
No 269
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=70.65 E-value=1.9e+02 Score=32.71 Aligned_cols=117 Identities=23% Similarity=0.356 Sum_probs=69.0
Q ss_pred HHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 813 VEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKE 892 (1035)
Q Consensus 813 ~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~ 892 (1035)
.-|.-.+..+|.. +..=+.+|+. |...| ..++..-. .....+.-++.++.-|+...+-+...+++
T Consensus 253 ekmtKk~kklEKE--~l~wr~K~e~------aNk~v---L~la~ekt----~~~k~~~~lq~kiq~LekLcRALq~erne 317 (391)
T KOG1850|consen 253 EKMTKKIKKLEKE--TLIWRTKWEN------ANKAV---LQLAEEKT----VRDKEYETLQKKIQRLEKLCRALQTERNE 317 (391)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhh------hhHHH---HHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344455555322 2344667765 44444 44444322 22344556778888899888999999988
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcccccccccccCCCCCCc--ccCCccccccccccccCcccchhh
Q 001664 893 LVKQQRMREQAVTIALASSASGSSWRSSKHFADDMSGPLSPV--SLPAPKQLKFTPGIVNGSVRESAA 958 (1035)
Q Consensus 893 l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1035)
|..-+...+..++. +...-|+++|.+.. ..+..+++.-+|-.+-|+.-+..+
T Consensus 318 l~~~~~~~e~~v~~--------------k~~~~~la~pe~~~~~~~~~~~~~~ts~~~a~a~~~~gep 371 (391)
T KOG1850|consen 318 LNKKLEDLEAQVSA--------------KNAMKDLATPESKPCIILDSEKKLNTSSKRAAASHLEGEP 371 (391)
T ss_pred HHHHHHHHhcccch--------------hhhhhhhcCccccccccccchhccCCchhcccccCCCCCc
Confidence 88888777766654 45556677776644 334555666555555554444333
No 270
>PRK08939 primosomal protein DnaI; Reviewed
Probab=70.60 E-value=1.4 Score=50.05 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=28.7
Q ss_pred EEeceEeCCCCCCCcccccccchhhHHHhhcC-CCccEEeeccCCCCcccccc
Q 001664 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 99 (1035)
Q Consensus 48 F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G-~n~tI~aYGqTGSGKTyTm~ 99 (1035)
.+||.+-..+. ....++.. +...++....| ....++-||++|+||||-+.
T Consensus 124 atf~~~~~~~~-~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDR-DRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCCh-HHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 45555432221 23334443 34455544433 23468999999999999983
No 271
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=70.54 E-value=1.8 Score=45.90 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=21.9
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|...+-.|.+.+|+-||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 44555555677899999999999999987
No 272
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=70.18 E-value=2.1 Score=48.96 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=20.0
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.++..++.+ ...|+-.|.||||||++|
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 455555554 456777799999999887
No 273
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=70.09 E-value=1.7 Score=46.20 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.2
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4677899999999998
No 274
>PRK06921 hypothetical protein; Provisional
Probab=69.82 E-value=1.6 Score=48.65 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=16.0
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
...|+-||++|+||||.+
T Consensus 117 ~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 456888999999999998
No 275
>PF15294 Leu_zip: Leucine zipper
Probab=69.80 E-value=88 Score=35.00 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001664 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQK 625 (1035)
Q Consensus 576 ~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~k 625 (1035)
..+.+.+||..+..|+.+ +.+.-...+...+.|.+.+..-|..-
T Consensus 188 ~~q~l~dLE~k~a~lK~e------~ek~~~d~~~~~k~L~e~L~~~Khel 231 (278)
T PF15294_consen 188 KAQDLSDLENKMAALKSE------LEKALQDKESQQKALEETLQSCKHEL 231 (278)
T ss_pred cccchhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888633 33333444444555555555444443
No 276
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.77 E-value=2e+02 Score=32.64 Aligned_cols=83 Identities=27% Similarity=0.276 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIAT 689 (1035)
Q Consensus 610 ~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~ 689 (1035)
-...|-.-|+.+++.|..|+.+...|-+-... ...|.+.||+.+--..+ ..|+...+.+.+.|++++..+.+..
T Consensus 78 isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn---~L~rkl~qLr~EK~~lE---~~Le~EqE~~V~kL~k~i~~Le~e~ 151 (310)
T PF09755_consen 78 ISNTLLKKLQQLKKEKETLALKYEQEEEFLTN---DLSRKLNQLRQEKVELE---NQLEQEQEYLVNKLQKKIERLEKEK 151 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777777777666665555443 33444444444333222 2444456666778889999887766
Q ss_pred HHHHHHHHH
Q 001664 690 KRLKELLEA 698 (1035)
Q Consensus 690 krLke~le~ 698 (1035)
..+...|+.
T Consensus 152 ~~~q~~le~ 160 (310)
T PF09755_consen 152 SAKQEELER 160 (310)
T ss_pred HHhHHHHHH
Confidence 666666653
No 277
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.75 E-value=2.2 Score=44.50 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=18.7
Q ss_pred chhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 69 v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
+..+...-+-.-.-.++-||++|+||||..
T Consensus 35 ~~~l~~~~~~~~~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 35 IAQLAALEFIENGENLILYGPPGTGKTHLA 64 (178)
T ss_dssp HHHHHHH-S-SC--EEEEEESTTSSHHHHH
T ss_pred HHHHhcCCCcccCeEEEEEhhHhHHHHHHH
Confidence 444433333333445889999999999997
No 278
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=69.43 E-value=3.4e+02 Score=35.05 Aligned_cols=65 Identities=29% Similarity=0.309 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 635 EAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA-------LNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1035)
Q Consensus 635 e~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~-------~~~~q~~vL~rK~eE~~a~~krLke~le~~ 699 (1035)
...++...|...++|--.|++++.|+..|-.+-.. .+....-+-..-++|....++||.+..+++
T Consensus 1076 q~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~ 1147 (1189)
T KOG1265|consen 1076 QTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKR 1147 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888898888887777333211 233334455666777778888887766544
No 279
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=68.75 E-value=3.3 Score=40.68 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=31.9
Q ss_pred cEEee-ccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEE-----EeehhhhhhhHHhhhcC
Q 001664 83 TVLAY-GQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQL-----HVSFIEILKEEVRDLLD 150 (1035)
Q Consensus 83 tI~aY-GqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V-----~vS~~EIYnE~v~DLL~ 150 (1035)
.|+++ |+||+||||+- ..+.+.||..--...--..|.. .-+.+.-|.+++.+.+.
T Consensus 54 LVlSfHG~tGtGKn~v~-------------~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~ 114 (127)
T PF06309_consen 54 LVLSFHGWTGTGKNFVS-------------RLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIR 114 (127)
T ss_pred EEEEeecCCCCcHHHHH-------------HHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHHH
Confidence 46654 99999999985 3456777754221110011111 12456778888777764
No 280
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=68.73 E-value=2.1 Score=41.23 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.5
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999986
No 281
>PF13479 AAA_24: AAA domain
Probab=68.71 E-value=2 Score=46.01 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=16.1
Q ss_pred CccEEeeccCCCCcccccc
Q 001664 81 NATVLAYGQTGSGKTYTMG 99 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm~ 99 (1035)
+..|+.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999999873
No 282
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.64 E-value=3.1e+02 Score=34.37 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 722 EKSLQKWLEHELEVS------ANVHEVRFKYEKQSQVQAALADELTILKQ 765 (1035)
Q Consensus 722 ~~~~~~Wl~~ElE~~------~~~~e~~~~~e~l~e~R~~l~~El~~Lk~ 765 (1035)
....+-|=....+++ ..+-+..-++...+..|+-+..+...|.+
T Consensus 363 ~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~ 412 (716)
T KOG4593|consen 363 ERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNR 412 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466655555555 24555555666777777777666666654
No 283
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=68.63 E-value=2.1e+02 Score=33.76 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001664 606 KSDEAAKRLQAEIQSIKAQK---------VQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM 676 (1035)
Q Consensus 606 k~e~~~~~L~~ei~~mK~~k---------v~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~ 676 (1035)
..+.+|..|-+-+..++..- .+-++.|-+++..|-..-...+.....+...+.+.+.-|..++........
T Consensus 292 ~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~ 371 (388)
T PF04912_consen 292 EQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENME 371 (388)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655432 333677788888898888889999999999999999999999888777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 001664 677 VLQRKTEEAAIATKRL 692 (1035)
Q Consensus 677 vL~rK~eE~~a~~krL 692 (1035)
++...++.+...+..|
T Consensus 372 ~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 372 TIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 7888877777666655
No 284
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=68.55 E-value=2 Score=41.06 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.1
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999886
No 285
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=68.15 E-value=6.6 Score=43.07 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=32.2
Q ss_pred EcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccCCCCCCCCCCCCCcceEEeeeeeeecCCCcc
Q 001664 194 AVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSER 273 (1035)
Q Consensus 194 ~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~IftI~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr 273 (1035)
.+.+++++..++..... +..++ + ..-|.-++.|.|... . +-.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~-~~~~~---~--~~~s~~~i~l~i~~p--------~-------------~~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETD-RVTGT---N--KGISPVPINLRVYSP--------H-------------VLNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHH-HhcCC---C--CcccCcceEEEEeCC--------C-------------CCceEEEeCCCccc
Confidence 34678888888776432 11111 1 234556777777531 0 13599999999954
Q ss_pred c
Q 001664 274 A 274 (1035)
Q Consensus 274 ~ 274 (1035)
.
T Consensus 138 ~ 138 (240)
T smart00053 138 V 138 (240)
T ss_pred c
Confidence 3
No 286
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=68.08 E-value=13 Score=42.59 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=21.3
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccccC
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm~G 100 (1035)
.|..+++|.+| +.+..||||||..+-.
T Consensus 37 cIpkILeGrdc--ig~AkTGsGKT~AFaL 63 (442)
T KOG0340|consen 37 CIPKILEGRDC--IGCAKTGSGKTAAFAL 63 (442)
T ss_pred hhHHHhccccc--ccccccCCCcchhhhH
Confidence 45667889987 5677999999998744
No 287
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=67.90 E-value=1.7 Score=44.58 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=13.3
Q ss_pred hcCCCccEEeeccCCCCccccc
Q 001664 77 FQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 77 l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|...+|+-+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 4566788999999999999987
No 288
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=67.52 E-value=2.7 Score=43.99 Aligned_cols=29 Identities=31% Similarity=0.325 Sum_probs=20.7
Q ss_pred chhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 69 v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..+++..++.. ...|+-.|+||||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 44555555554 345677899999999987
No 289
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=67.49 E-value=2.6 Score=48.18 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=19.6
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.++..++.+ .+.|+-.|.||||||++|
T Consensus 135 ~~L~~~v~~-~~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDS-RLNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 444555543 245788899999999998
No 290
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.48 E-value=2.5 Score=46.73 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=22.1
Q ss_pred cccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 62 SAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 62 ~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
...|.. +..++..+- -...++-||++|+||||-.
T Consensus 89 ~~~l~~-~~~~~~~~~--~~~nl~l~G~~G~GKThLa 122 (254)
T COG1484 89 KKALED-LASLVEFFE--RGENLVLLGPPGVGKTHLA 122 (254)
T ss_pred HHHHHH-HHHHHHHhc--cCCcEEEECCCCCcHHHHH
Confidence 344433 445555544 3344667999999999997
No 291
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=67.38 E-value=2.4 Score=48.02 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.3
Q ss_pred cCC-CccEEeeccCCCCccccc
Q 001664 78 QGY-NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 78 ~G~-n~tI~aYGqTGSGKTyTm 98 (1035)
.|. ...+|-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 453 345666999999999987
No 292
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=67.37 E-value=2.7e+02 Score=33.19 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 498 ~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
....+-...|+.+++-+..+...+-..-..++ ....++..|+++.+.|+..--.+...+..+
T Consensus 260 ~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~--k~s~~i~~l~ek~r~l~~D~nk~~~~~~~m 321 (622)
T COG5185 260 LGFEKFVHIINTDIANLKTQNDNLYEKIQEAM--KISQKIKTLREKWRALKSDSNKYENYVNAM 321 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455666677777666544433220001121 134667777777777665555555544443
No 293
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=67.13 E-value=2.6 Score=53.58 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=20.4
Q ss_pred hhHHHhhc--CCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~--G~n~tI~aYGqTGSGKTyTm 98 (1035)
.++..++. |-+.+||.||+||+|||.|+
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 34444443 44556789999999999998
No 294
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.63 E-value=2.1e+02 Score=31.72 Aligned_cols=69 Identities=22% Similarity=0.370 Sum_probs=38.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 492 EHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTE----ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 492 e~~~~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~----~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
++..+..++..++..|..+++.+++.+.+.. .+.. -+.+.|--+.....+-.+.++.-++...+++.++
T Consensus 71 eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~-~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel 143 (258)
T PF15397_consen 71 ELQEWEEKEESKLSKLQQQLEQLDAKIQKTQ-EELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666677777777777776665544 2211 2334466555555555555555566666665544
No 295
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.32 E-value=1.7e+02 Score=30.46 Aligned_cols=77 Identities=29% Similarity=0.409 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001664 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQA 616 (1035)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ 616 (1035)
+..|..+...|+.|.+.|..+|.. ...+++...+--+..-..++.+...... .++.....+.+.++..|+.
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~~-------ei~~l~a~~klD~n~eK~~~r~e~~~~~--~ki~e~~~ki~~ei~~lr~ 145 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELRE-------EINKLRAEVKLDLNLEKGRIREEQAKQE--LKIQELNNKIDTEIANLRT 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555442 1233333222222222222222222222 2244455556666666666
Q ss_pred HHHHHH
Q 001664 617 EIQSIK 622 (1035)
Q Consensus 617 ei~~mK 622 (1035)
+|+..|
T Consensus 146 ~iE~~K 151 (177)
T PF07798_consen 146 EIESLK 151 (177)
T ss_pred HHHHHH
Confidence 666543
No 296
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.01 E-value=4.3e+02 Score=34.93 Aligned_cols=32 Identities=9% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001664 589 ELKKKQESQVELLKQKHKSDEAAKRLQAEIQS 620 (1035)
Q Consensus 589 ~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~ 620 (1035)
.+....+++..+.+...+.+..+......+.+
T Consensus 256 ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 256 EIRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455666666666666666666666655
No 297
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=65.80 E-value=1.8e+02 Score=30.44 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001664 639 FRQWKASREKELLKLK 654 (1035)
Q Consensus 639 ~r~~~~~~~kEi~qLk 654 (1035)
++..-....+++..|.
T Consensus 135 l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 135 LDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 298
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.77 E-value=2.5e+02 Score=32.19 Aligned_cols=219 Identities=17% Similarity=0.209 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHH
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK--KKQESQVELLKQKHKSDEA 610 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lk--kk~~~~~~l~k~k~k~e~~ 610 (1035)
+..-+.+..+++..|+.|.+.|...+.++.. | .|+ ++.++..++..-..+- .--.++..+...-++...+
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG--D---~Kl---LR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q 141 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQG--D---IKL---LREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQ 141 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--h---HHH---HHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655421 1 111 1122222211111111 1113455666666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 001664 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMV---LQRKTEEAAI 687 (1035)
Q Consensus 611 ~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~v---L~rK~eE~~a 687 (1035)
+..|+.+++.+---|.+ +..|-.-|+.--...+.|+..+=.-...+-..|-.|-+++.-++.. ++....=+-+
T Consensus 142 ~~qLe~d~qs~lDEkeE----l~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~ 217 (319)
T PF09789_consen 142 IEQLERDLQSLLDEKEE----LVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766555544 5567777888778888888887777666666677776655444443 4445555667
Q ss_pred HHHHHHHHHHHHhhhhhhhccccCC-CCCCCCCCchHHHHHHHHHHH---------------HHH-----HhHHHHHHHH
Q 001664 688 ATKRLKELLEARKSSARENSVNSTG-YTTPTGQSNEKSLQKWLEHEL---------------EVS-----ANVHEVRFKY 746 (1035)
Q Consensus 688 ~~krLke~le~~k~~~~~~e~~~~~-~~~~~~~~~~~~~~~Wl~~El---------------E~~-----~~~~e~~~~~ 746 (1035)
.+.+-|.+|+.++.... .+...+ .++.++-...+-|+..|..+. ..+ ..++|=--++
T Consensus 218 ~i~KYK~~le~k~~~~~--~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~~al 295 (319)
T PF09789_consen 218 TINKYKSALERKRKKGI--IKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKNLAL 295 (319)
T ss_pred HHHHHHHHHHhhccccc--cccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 77788888886432211 111101 011112245667777663333 322 1233334444
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001664 747 EKQSQVQAALADELTILKQ 765 (1035)
Q Consensus 747 e~l~e~R~~l~~El~~Lk~ 765 (1035)
..|-.-.+.|+..++.|.+
T Consensus 296 ~Hqr~tNkILg~rv~ELE~ 314 (319)
T PF09789_consen 296 QHQRKTNKILGNRVAELEK 314 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445666666666654
No 299
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=65.58 E-value=2.8 Score=44.45 Aligned_cols=16 Identities=44% Similarity=0.650 Sum_probs=12.3
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
..+..|+.|||||+|+
T Consensus 19 ~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp -EEEE-STTSSHHHHH
T ss_pred CEEEECCCCCChHHHH
Confidence 4566899999999998
No 300
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=65.32 E-value=2.8e+02 Score=32.52 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 001664 502 KELNELNKRLEQKE 515 (1035)
Q Consensus 502 ~El~eL~kqLe~kE 515 (1035)
.++..+..+++..+
T Consensus 81 ~~l~~l~~~~~~l~ 94 (423)
T TIGR01843 81 ADAAELESQVLRLE 94 (423)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444333
No 301
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=64.98 E-value=3.7 Score=45.20 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.1
Q ss_pred cCCCccEEeeccCCCCccccc
Q 001664 78 QGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 78 ~G~n~tI~aYGqTGSGKTyTm 98 (1035)
....+.++-+|++|||||+++
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHH
Confidence 334567888999999999887
No 302
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=64.64 E-value=2.7e+02 Score=32.25 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 402 APSDEVQVLKGRIAWLEATNEDLCQELHEYR 432 (1035)
Q Consensus 402 ~~~~e~q~L~eri~~Le~e~~~L~~eL~e~r 432 (1035)
.+++-+..|+++|..|.+..+..+.+++...
T Consensus 288 ~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q 318 (593)
T KOG4807|consen 288 PPSDGHEALEKEVQALRAQLEAWRLQGEAPQ 318 (593)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhccCch
Confidence 4566778888888877777766666654433
No 303
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=64.62 E-value=3.1 Score=47.48 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=21.0
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..++-.+..+. +.|+-.|.||||||+++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 34444445555 78899999999999987
No 304
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=64.46 E-value=3.7 Score=43.88 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=17.0
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.++.++ .+-.|++.|+.||||||.-
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHH
Confidence 344555 5668899999999999885
No 305
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=64.44 E-value=3.4 Score=46.32 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=22.3
Q ss_pred cccccchhhHHHhhcC-CCccEEeeccCCCCccccc
Q 001664 64 MFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 64 vy~~~v~plV~~~l~G-~n~tI~aYGqTGSGKTyTm 98 (1035)
++.+.|-.++.+.+.| .--..+-||+.|+|||.|.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3333334444444444 4444678999999999997
No 306
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.41 E-value=3.7e+02 Score=33.66 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=23.1
Q ss_pred HHhhHHHHHHHHHHH-HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 001664 496 WQNTMDKELNELNKR-LEQKESEMKLFGDIDTEALRHHFGKKIMELEEEK 544 (1035)
Q Consensus 496 ~q~~l~~El~eL~kq-Le~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei 544 (1035)
+|+.-....++|+.. +.+.|...++|. .+....+..|+..|..||.+-
T Consensus 802 LQkeE~R~qqqL~~k~~~q~Eq~~rrFe-qE~~~kkr~~d~EmenlErqQ 850 (1187)
T KOG0579|consen 802 LQKEEARQQQQLQAKGIKQVEQQARRFE-QEQTNKKRTSDLEMENLERQQ 850 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHH
Confidence 444444444445433 334444445554 333344555666666665443
No 307
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=64.34 E-value=3.3 Score=47.21 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=17.0
Q ss_pred cCCCccEEeeccCCCCccccc
Q 001664 78 QGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 78 ~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.|....++-||++|||||++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 454446888999999999987
No 308
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=64.33 E-value=84 Score=34.72 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=31.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (1035)
Q Consensus 571 KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkm 632 (1035)
+-++.+++|..+||.|+..+ ..++..|+.||..+++-=++|--|+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~-----------------~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQ-----------------QQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888888888555433 3456678888888888888855444
No 309
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=64.25 E-value=5.1 Score=48.02 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=33.0
Q ss_pred cEEeeccCCCCccccc---cCCCCCCCcccchhHHHHHHHHHHHhh
Q 001664 83 TVLAYGQTGSGKTYTM---GTGLREGFQTGLIPQVMNALFNKIETL 125 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm---~G~~~~~~~~Giipr~~~~LF~~i~~~ 125 (1035)
-||..|+|+|||||-- ++....+--.|=+-....++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 3899999999999985 333345556677788888999888764
No 310
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.05 E-value=1.6e+02 Score=38.21 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001664 537 IMELEEEKRIVQQERDRLLA 556 (1035)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~ 556 (1035)
|..|+++...++.+++++..
T Consensus 522 i~~l~~~~~~~e~~~~~~~~ 541 (782)
T PRK00409 522 IASLEELERELEQKAEEAEA 541 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333
No 311
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=63.53 E-value=4.6 Score=41.08 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=18.3
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
++..+..+. ..++..|+||||||+++
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAA 41 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHH
Confidence 344445443 45567799999999987
No 312
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.48 E-value=1.9e+02 Score=30.12 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 535 KKIMELEEEKRIVQQERDRLLAEI 558 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l 558 (1035)
+++.++++.+..++.+.+.+....
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~ 118 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDL 118 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555544444444433
No 313
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=63.40 E-value=2.9 Score=44.30 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=13.0
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
.++.+|.||||||++|
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 6889999999999998
No 314
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=63.26 E-value=3.1e+02 Score=33.17 Aligned_cols=60 Identities=27% Similarity=0.255 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 606 k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
+.-.++..+++|+..|-.+.|++.+|+|.=.....+ +.--+...+...|..+.|...|+-
T Consensus 223 ~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekee----l~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEE----LDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334456667777777778888877777654433322 111222234445555566555553
No 315
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=63.25 E-value=3.2 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=17.1
Q ss_pred hcCCCccEEeeccCCCCccccc
Q 001664 77 FQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 77 l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
+.-.++.++..|..|||||+||
T Consensus 9 i~~~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 9 IRSTEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp HHS-SSEEEEEE-TTSSHHHHH
T ss_pred HhCCCCCEEEEeCCCCCchHHH
Confidence 3347888899999999999999
No 316
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=63.25 E-value=3 Score=48.22 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=18.9
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.++..+.. ..+.|+..|+||||||++|
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 33444433 3455788899999999998
No 317
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=63.15 E-value=3.1e+02 Score=32.34 Aligned_cols=52 Identities=29% Similarity=0.260 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhhHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 648 KELLKLKKEGRKNEFERH------------K-LEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (1035)
Q Consensus 648 kEi~qLk~~~rK~e~ei~------------~-L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~ 699 (1035)
|||.||+.+++|.+.|+. + |+.-|+-...-+.+|-.-+...++.-+|..|+-
T Consensus 309 kelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~ekl 373 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKL 373 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 699999999999999842 2 222455555555555555555555555555543
No 318
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.14 E-value=51 Score=37.49 Aligned_cols=65 Identities=28% Similarity=0.270 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHH
Q 001664 596 SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA---LNQ 672 (1035)
Q Consensus 596 ~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~---~~~ 672 (1035)
.++-.+|++++.++++.+++.++..+|+.... |+.-..+.+.++.+|+. .-+
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~Ee-------------------------L~~G~~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEE-------------------------LNIGKQKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------------------------HHhhHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888888888888888888877 33333333334444443 123
Q ss_pred HHHHHHHHHHHHH
Q 001664 673 RQKMVLQRKTEEA 685 (1035)
Q Consensus 673 ~q~~vL~rK~eE~ 685 (1035)
++--||.+|.+|+
T Consensus 267 ~niDIL~~k~~ea 279 (365)
T KOG2391|consen 267 KNIDILKSKVREA 279 (365)
T ss_pred hhhHHHHHHHHHH
Confidence 3445899999983
No 319
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=62.91 E-value=1.8e+02 Score=30.88 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=35.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001664 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALN 671 (1035)
Q Consensus 603 ~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~ 671 (1035)
.+.+.|..+..|+..|.+|+.+...+ ...+....+||.+|+.....-..++..++..+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~-----------~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKL-----------KEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777666665542 22223334777777777776666666665433
No 320
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=62.78 E-value=3.9 Score=47.04 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=19.0
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.++..++.+ .+.|+..|.||||||++|
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHHH
Confidence 344444433 345778899999999998
No 321
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=62.67 E-value=2.8e+02 Score=31.68 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=13.9
Q ss_pred HHHHhhhccCCCcccccccccccCC
Q 001664 905 TIALASSASGSSWRSSKHFADDMSG 929 (1035)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1035)
|.-|.++..-+++.|+.+|+-|.+.
T Consensus 263 A~slTasry~~~e~svhnysLdcRr 287 (401)
T PF06785_consen 263 ASSLTASRYINSESSVHNYSLDCRR 287 (401)
T ss_pred HHHhhHHhhhccCCccccchHHHHH
Confidence 3444444555566677777655543
No 322
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=62.63 E-value=3.7e+02 Score=33.04 Aligned_cols=168 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 001664 612 KRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA-----LNQRQKMVLQRKTEEAA 686 (1035)
Q Consensus 612 ~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~-----~~~~q~~vL~rK~eE~~ 686 (1035)
++|+.|| -++.||+.|-.+.|.. =..++.+ +.++-..=|+|.++.++
T Consensus 4 RKLq~eI-------dr~lkKv~Egve~Fd~---------------------i~ek~~~~~n~sqkeK~e~DLKkEIKKLQ 55 (575)
T KOG2150|consen 4 RKLQQEI-------DRCLKKVDEGVEIFDE---------------------IYEKLHSANNVSQKEKLESDLKKEIKKLQ 55 (575)
T ss_pred hHHHHHH-------HHHHHHhhhhHHHHHH---------------------HHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001664 687 IATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (1035)
Q Consensus 687 a~~krLke~le~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~Wl~~ElE~~~~~~e~~~~~e~l~e~R~~l~~El~~Lk~~ 766 (1035)
||++ .|+.|+.-. |.++. ..|+.-|+-++..++..|.+
T Consensus 56 ----RlRd-----------------------------QIKtW~ss~--------dIKDK-~~L~d~RrlIE~~MErfK~v 93 (575)
T KOG2150|consen 56 ----RLRD-----------------------------QIKTWQSSS--------DIKDK-DSLLDNRRLIEQRMERFKAV 93 (575)
T ss_pred ----HHHH-----------------------------HHHhhhccc--------ccccH-HHHHHHHHHHHHHHHHHHHH
Q ss_pred chhccCCCCCCCCCCCCcccccCChHHHHHHHHHHHHHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHH
Q 001664 767 DQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKN 846 (1035)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~ 846 (1035)
...... -+-.+.|......++|..+..+ ..+.-.+++|.+|..|++..| |
T Consensus 94 Eke~Kt---Ka~SkegL~~~~klDPkEkek~-----d~~~wi~~~ideLe~q~d~~e--------------------a-- 143 (575)
T KOG2150|consen 94 EKEMKT---KAFSKEGLSAAEKLDPKEKEKR-----DTMDWISNQIDELERQVDSFE--------------------A-- 143 (575)
T ss_pred HHHhhc---cccchhhccccccCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHH--------------------H--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 847 LLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQ 902 (1035)
Q Consensus 847 ~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~ 902 (1035)
.+++..+.--.-....++..+..|.+..-..+.
T Consensus 144 -----------------------~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~ 176 (575)
T KOG2150|consen 144 -----------------------EELERFIERHRWHQQKLELILRLLDNDELDPEA 176 (575)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHhhccccCHHH
No 323
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=62.60 E-value=3.1 Score=51.92 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=31.5
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.-+||.+++.+ .. +..++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGqs-----~~----~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQE-----RA----IKALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeCc-----HH----HHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46788887532 22 234566666788888999999999999876
No 324
>PRK06547 hypothetical protein; Provisional
Probab=62.50 E-value=4.2 Score=42.19 Aligned_cols=30 Identities=43% Similarity=0.446 Sum_probs=20.3
Q ss_pred chhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 69 v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
|..++..+..+.---|+.+|.+|||||+.-
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555555455555666799999999875
No 325
>PRK13764 ATPase; Provisional
Probab=62.25 E-value=3.8 Score=50.68 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.6
Q ss_pred HhhcCCCccEEeeccCCCCccccc
Q 001664 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 75 ~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..+......|+..|+||||||+++
T Consensus 251 ~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 251 ERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH
Confidence 333344556899999999999998
No 326
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=62.24 E-value=65 Score=41.59 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=4.3
Q ss_pred hHHHHHHHHHH
Q 001664 738 NVHEVRFKYEK 748 (1035)
Q Consensus 738 ~~~e~~~~~e~ 748 (1035)
.++||...++.
T Consensus 713 ~~eeA~~~l~~ 723 (782)
T PRK00409 713 RYEEALERLDK 723 (782)
T ss_pred CHHHHHHHHHH
Confidence 33344433333
No 327
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.21 E-value=2.6e+02 Score=31.17 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001664 680 RKTEEAAIATKRLKELLEAR 699 (1035)
Q Consensus 680 rK~eE~~a~~krLke~le~~ 699 (1035)
.+++++...++..++.|..|
T Consensus 87 ~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 87 KEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666654
No 328
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.17 E-value=4.8e+02 Score=34.24 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001664 535 KKIMELEEEKRIVQQERDRLLA 556 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~ 556 (1035)
.++..|++++.++.++.+.+.+
T Consensus 202 ~~l~~L~~~~~~l~kdVE~~re 223 (1072)
T KOG0979|consen 202 EKLNRLEDEIDKLEKDVERVRE 223 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444443
No 329
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.95 E-value=79 Score=32.57 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 537 IMELEEEKRIVQQERDRLLAEIENL 561 (1035)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~ 561 (1035)
+.+|++++..+..+...|..++.++
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 330
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=61.92 E-value=3.3 Score=45.31 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=15.4
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
.-+|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 456899999999999875
No 331
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=61.57 E-value=3.3e+02 Score=34.39 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.6
Q ss_pred CCCccEEeeccCCCCccccc
Q 001664 79 GYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 79 G~n~tI~aYGqTGSGKTyTm 98 (1035)
-.+-+|+.-|.+|+|||-+-
T Consensus 142 k~SQSIIVSGESGAGKTEst 161 (1259)
T KOG0163|consen 142 KLSQSIIVSGESGAGKTEST 161 (1259)
T ss_pred hhcccEEEecCCCCCcchhH
Confidence 56778999999999999653
No 332
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=61.45 E-value=2.2e+02 Score=31.20 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHH
Q 001664 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQ--ESQVELLKQKHKSDEAAK 612 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~--~~~~~l~k~k~k~e~~~~ 612 (1035)
+....++..+.++++..-..... +.|.++.|..++++++.....++.+. ..+.++.|++.|.+....
T Consensus 100 k~~k~~e~~~~k~~K~~~~~~~~-----------~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~ 168 (233)
T cd07649 100 KDMKKLDHHIADLRKQLASRYAA-----------VEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGD 168 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 34555666666665555443333 34567789999999987655554432 235667888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKA 644 (1035)
Q Consensus 613 ~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~ 644 (1035)
.++..+...+..+.+-+..|..-.++|.....
T Consensus 169 e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee 200 (233)
T cd07649 169 DLMRCVDLYNQAQSKWFEEMVTTSLELERLEV 200 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877777777766666443
No 333
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=61.42 E-value=3.4 Score=40.61 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999886
No 334
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.39 E-value=3.6e+02 Score=32.48 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 534 GKKIMELEEEKRIVQQERDRLLAEIEN 560 (1035)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~ 560 (1035)
...+..+..++..++.+...+...+..
T Consensus 171 ~~~~~~~~~~i~~~~~~~~~~~~~~~~ 197 (457)
T TIGR01000 171 EKTKAQLDQQISKTDQKLQDYQALKNA 197 (457)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443
No 335
>PRK09183 transposase/IS protein; Provisional
Probab=61.29 E-value=3.4 Score=45.85 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.0
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
.|+-||++|+||||.+
T Consensus 104 ~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 104 NIVLLGPSGVGKTHLA 119 (259)
T ss_pred eEEEEeCCCCCHHHHH
Confidence 3667999999999998
No 336
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=61.16 E-value=1.5e+02 Score=32.53 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.2
Q ss_pred CcccCCCChhhhhhhccCCC
Q 001664 314 VHVPYRDSKLTRLLQDSLGG 333 (1035)
Q Consensus 314 ~~vPyRdSkLTrLLqdsLgG 333 (1035)
.+||--.++-||||-|.+.|
T Consensus 93 ~~v~a~e~~~~rll~d~i~n 112 (330)
T KOG2991|consen 93 AYVQALEGKYTRLLSDDITN 112 (330)
T ss_pred HHHHHhcCcccchhHHHHHh
Confidence 47888888999999988754
No 337
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.96 E-value=1.7e+02 Score=37.76 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001664 536 KIMELEEEKRIVQQERDRLLA 556 (1035)
Q Consensus 536 kl~eLEeei~~LqkErd~Ll~ 556 (1035)
-|..|+++...++.+++++..
T Consensus 516 li~~L~~~~~~~e~~~~~~~~ 536 (771)
T TIGR01069 516 LIEKLSALEKELEQKNEHLEK 536 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 338
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=60.28 E-value=3.5 Score=46.31 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.9
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
.|+-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999998
No 339
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.20 E-value=3.7 Score=48.18 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=16.1
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
...|+.+|+||+|||+|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999998
No 340
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=60.19 E-value=3.5 Score=42.72 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.8
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999976
No 341
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=59.93 E-value=3.3 Score=39.28 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999988
No 342
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=59.79 E-value=4.3e+02 Score=32.86 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001664 680 RKTEEAAIATKRLKELLE 697 (1035)
Q Consensus 680 rK~eE~~a~~krLke~le 697 (1035)
.++.++.+.++.|.+.+.
T Consensus 378 ~~l~~~~~~~~~le~~~~ 395 (582)
T PF09731_consen 378 AKLAELNSRLKALEEALD 395 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 343
>PHA00729 NTP-binding motif containing protein
Probab=59.76 E-value=4.8 Score=43.66 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=21.0
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..++..+..|--..|+.+|.+|+||||..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 34555555433347999999999999886
No 344
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.17 E-value=4.3 Score=45.78 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=14.0
Q ss_pred ccEEeeccCCCCcccc
Q 001664 82 ATVLAYGQTGSGKTYT 97 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyT 97 (1035)
+.|+..||||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 5689999999999974
No 345
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=58.89 E-value=5.8 Score=41.57 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=18.9
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.++.++.|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455566777 577899999999884
No 346
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=58.83 E-value=1.8 Score=50.91 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.5
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 456899999999999876
No 347
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.80 E-value=2.4e+02 Score=30.49 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=78.7
Q ss_pred HHHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 802 ENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVA 881 (1035)
Q Consensus 802 e~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~ 881 (1035)
+......-..+++...+|++...... ..+.++.++-+.+...-.....-.......+.+++..+++++-+.+
T Consensus 36 q~~r~~~~nS~~efar~lS~~~~e~e--------~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~ 107 (246)
T KOG4657|consen 36 QSPRRRSMNSLVEFARALSQSQVELE--------NLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRR 107 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666667766533221 4556677777777666565555555667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhccCCCcccccccccccCCCCCCc
Q 001664 882 LLKQSEAQRKELVKQQRMREQAVTIALA-----SSASGSSWRSSKHFADDMSGPLSPV 934 (1035)
Q Consensus 882 ~l~~~~~~~~~l~~~~~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1035)
.++.++.++..+..-+...-++++-.-. ..-+..-+.++.-|-|-++-.+.|+
T Consensus 108 n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 108 NLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHhcCceeeec
Confidence 9998888888876666666654422222 1122334455666666666555444
No 348
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=58.54 E-value=4 Score=39.00 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=13.3
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999886
No 349
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=58.50 E-value=4.3e+02 Score=32.44 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=12.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001664 570 QKMQDGHTLKLKALEAQILELKKKQE 595 (1035)
Q Consensus 570 ~KLke~~e~kL~eLE~el~~Lkkk~~ 595 (1035)
......|-+++..++.....|.....
T Consensus 179 ~~~~~~fl~rtl~~e~~~~~L~~~~~ 204 (511)
T PF09787_consen 179 ITAVVEFLKRTLKKEIERQELEERPK 204 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555544444444333
No 350
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.49 E-value=52 Score=35.76 Aligned_cols=44 Identities=30% Similarity=0.490 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 645 SREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRL 692 (1035)
Q Consensus 645 ~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krL 692 (1035)
.++|.|.-|+.. +++. ..|+..|.-....|++|++|+.-++..|
T Consensus 250 eKdkqisnLKad---~e~~-~~~ek~Hke~v~qL~~k~~~~lk~~a~l 293 (305)
T KOG3990|consen 250 EKDKQISNLKAD---KEYQ-KELEKKHKERVQQLQKKKEESLKAIAQL 293 (305)
T ss_pred hhhhhhhccCcc---hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544 2222 4455566666777888888876554444
No 351
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=57.73 E-value=4.1 Score=47.25 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=33.5
Q ss_pred eEEeceEeCCCCCCCcccccccchhhHHHhhc--C--CCccEEeeccCCCCccccc
Q 001664 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ--G--YNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 47 ~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~--G--~n~tI~aYGqTGSGKTyTm 98 (1035)
++.||++.+.-.. -..|.+.++-.++.+++. | .---|+-||+.|+|||+..
T Consensus 111 ~~~f~~~~g~~~~-~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 111 TRSFDNLVGGYYI-APAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hcchhhhcCcccc-CHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 4666777654333 345666666677777663 2 2334778999999999874
No 352
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=57.56 E-value=4.7 Score=45.71 Aligned_cols=27 Identities=44% Similarity=0.722 Sum_probs=20.6
Q ss_pred hhHHHhhcCCC---ccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n---~tI~aYGqTGSGKTyTm 98 (1035)
|.+...+.|-- -|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 66777777753 46665 99999999887
No 353
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=57.45 E-value=4.1 Score=40.06 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999886
No 354
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.44 E-value=4.4 Score=47.29 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.7
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
...|+-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456778899999999998
No 355
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=57.30 E-value=5.5 Score=49.22 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=33.0
Q ss_pred CCCccEEeeccCCCCccccccCCCC-------C--C-----CcccchhHHHHHHHHHHHhhcc
Q 001664 79 GYNATVLAYGQTGSGKTYTMGTGLR-------E--G-----FQTGLIPQVMNALFNKIETLRH 127 (1035)
Q Consensus 79 G~n~tI~aYGqTGSGKTyTm~G~~~-------~--~-----~~~Giipr~~~~LF~~i~~~~~ 127 (1035)
-....|+-||+.|+||||..+.-.. + | ..-|---..+++||.+.....+
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKP 761 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCC
Confidence 3456799999999999998622110 0 0 1236667788999988776543
No 356
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=57.21 E-value=3.4e+02 Score=30.91 Aligned_cols=106 Identities=13% Similarity=0.179 Sum_probs=61.6
Q ss_pred cCChHHHHHHHHHHHHHHhhchHHHHHHHHHhHHHHHHHHhh----hccccchhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 788 SLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERAL----VGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLW 863 (1035)
Q Consensus 788 ~l~~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~----~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~ 863 (1035)
.|+.......|+.+.+.|......|.++..++.++......+ ..++.+..- .+...-..++......+.....+.
T Consensus 66 ~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~-~~~n~~~~~~~~t~~la~~t~~L~ 144 (301)
T PF06120_consen 66 EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENG-YIINHLMSQADATRKLAEATRELA 144 (301)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667778889999999999999999999999886555321 111111110 000000112223344444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 864 EKDTEIKEIKEQLNDLVALLKQSEAQRKELV 894 (1035)
Q Consensus 864 ~~e~~l~El~~k~~el~~~l~~~~~~~~~l~ 894 (1035)
..+.++..+..+..+....+..+..+.-.+.
T Consensus 145 ~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 145 VAQERLEQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666665433
No 357
>PTZ00424 helicase 45; Provisional
Probab=57.15 E-value=5.6 Score=46.64 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=20.1
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 345667788884 56789999999875
No 358
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.12 E-value=58 Score=31.23 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 001664 385 RQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (1035)
Q Consensus 385 r~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~~~E~ 440 (1035)
-..+..+...+... ..++..|+..+..|.++|..|+.|.+.++.++...++
T Consensus 7 ~~~l~~le~~l~~l-----~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQL-----LEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555444 5677888889999999999999999999988876654
No 359
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=56.61 E-value=4.8 Score=47.17 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
++.+|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 678999999999987
No 360
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=56.54 E-value=5.5e+02 Score=33.07 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHH-----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 577 TLKLKALEAQILELKKKQES-QVELLKQKHKSDEA-----AK-------RLQAEIQSIKAQKVQLQNKIKQEAEQF 639 (1035)
Q Consensus 577 e~kL~eLE~el~~Lkkk~~~-~~~l~k~k~k~e~~-----~~-------~L~~ei~~mK~~kv~L~kkmkee~~~~ 639 (1035)
.++|.+++.++...+.+... ++++...+...... +- .+...|++|+.+..++..++.+-+.++
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y 311 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTM 311 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47788888777777643333 33333333222110 00 111456666666666666665555544
No 361
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=55.81 E-value=16 Score=47.40 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=15.0
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
++++-+|+||+|||++.
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999986
No 362
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=55.58 E-value=4.5e+02 Score=31.83 Aligned_cols=73 Identities=26% Similarity=0.247 Sum_probs=49.6
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001664 623 AQKV-QLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKS 701 (1035)
Q Consensus 623 ~~kv-~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~ 701 (1035)
.+-+ .+.|.++.-..+.+. ..+||.++-+++-+...|+.+|.+ |-.-+++|++.......++.+.|.+-+.
T Consensus 197 q~~y~~~~KelrdtN~q~~s----~~eel~~kt~el~~q~Ee~skLls----ql~d~qkk~k~~~~Ekeel~~~Lq~~~d 268 (596)
T KOG4360|consen 197 QQLYGDCVKELRDTNTQARS----GQEELQSKTKELSRQQEENSKLLS----QLVDLQKKIKYLRHEKEELDEHLQAYKD 268 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 556666666555543 456667777777777777777765 3334778889998888888888876655
Q ss_pred hh
Q 001664 702 SA 703 (1035)
Q Consensus 702 ~~ 703 (1035)
+.
T Consensus 269 a~ 270 (596)
T KOG4360|consen 269 AQ 270 (596)
T ss_pred hH
Confidence 44
No 363
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=55.53 E-value=5.4 Score=44.13 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.3
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
...|+-||++|||||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345788999999999987
No 364
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=55.46 E-value=2.8e+02 Score=29.47 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 616 AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKEL 695 (1035)
Q Consensus 616 ~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~ 695 (1035)
+++..++...-+.++.-+.+..+...+-..++.-+..-...+.+++.++......-..+...|..+..++..........
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~ 139 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQE 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333334444444444444444444444444445555555555554444444445555555555444444444
Q ss_pred HH
Q 001664 696 LE 697 (1035)
Q Consensus 696 le 697 (1035)
|+
T Consensus 140 Le 141 (201)
T PF12072_consen 140 LE 141 (201)
T ss_pred HH
Confidence 43
No 365
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=55.20 E-value=2.4e+02 Score=28.47 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001664 607 SDEAAKRLQAEIQSIKAQKVQ 627 (1035)
Q Consensus 607 ~e~~~~~L~~ei~~mK~~kv~ 627 (1035)
+...+...+..|.++......
T Consensus 85 L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 85 LDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 333333334444444443333
No 366
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=54.99 E-value=13 Score=47.46 Aligned_cols=61 Identities=28% Similarity=0.436 Sum_probs=38.3
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHh
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVR 146 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~ 146 (1035)
.+..+++|.|+.|+| |||||||-+- ++| +++.|+..-.....+.-+.++||=+---|..|.
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA-----------fLp-il~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~ 90 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA-----------FLP-VINELLSLGKGKLEDGIYALYISPLKALNNDIR 90 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH-----------HHH-HHHHHHhccCCCCCCceEEEEeCcHHHHHHHHH
Confidence 455678999998887 9999999774 233 445555432111123457778877766555443
No 367
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=54.92 E-value=6.9 Score=47.03 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=19.6
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+..+++|.| |++.++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 3455678887 778889999999774
No 368
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=54.91 E-value=7.6 Score=49.04 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=14.9
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
.-.++-||+.|+|||.+.
T Consensus 38 ~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445678999999999875
No 369
>PRK10536 hypothetical protein; Provisional
Probab=54.81 E-value=7 Score=43.22 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.8
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
+..|+..|++||||||..
T Consensus 74 ~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 74 KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 358999999999999985
No 370
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=54.65 E-value=10 Score=43.95 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=14.5
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
+..|+-.|++|||||+..
T Consensus 78 r~il~L~GPPGsGKStla 95 (361)
T smart00763 78 KQILYLLGPVGGGKSSLV 95 (361)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 455778899999999764
No 371
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=54.49 E-value=2.6e+02 Score=28.75 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 608 DEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFR 640 (1035)
Q Consensus 608 e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r 640 (1035)
+..-..|..+...|.....++|++.++-.++.+
T Consensus 123 ee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 123 EEREAELKKEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566666666666666666666544
No 372
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=54.23 E-value=6.6 Score=47.92 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=21.9
Q ss_pred chhhHHHhhcCCC--ccEEeeccCCCCccccc
Q 001664 69 VAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 69 v~plV~~~l~G~n--~tI~aYGqTGSGKTyTm 98 (1035)
|+..+...+.|.. ..++-+||+|||||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4455666565543 45678999999999998
No 373
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=53.62 E-value=2.3 Score=50.15 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=0.0
Q ss_pred EEeceEeCCCCCCCcccccccchhhHH-HhhcCCC----ccEEeeccCCCCcccc
Q 001664 48 FTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGYN----ATVLAYGQTGSGKTYT 97 (1035)
Q Consensus 48 F~FD~VF~~~~s~q~~vy~~~v~plV~-~~l~G~n----~tI~aYGqTGSGKTyT 97 (1035)
++|+.|.|.+.. -..+.+.+..|+.. .+|..+. ..|+-||++|+|||+.
T Consensus 142 v~~~digGl~~~-k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 142 VTYSDIGGLDIQ-KQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCHHHcCCHHHH-HHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHH
No 374
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=53.44 E-value=5.4 Score=44.82 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
...||+|||||++-+
T Consensus 90 ~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEECCCCCCHHHHH
Confidence 456999999999987
No 375
>PRK12704 phosphodiesterase; Provisional
Probab=53.01 E-value=5.2e+02 Score=31.81 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=7.6
Q ss_pred ecccCcchhhhhhhc
Q 001664 1002 WKWQKPWKLSEWIKH 1016 (1035)
Q Consensus 1002 ~~~~~~~~~~~~~~~ 1016 (1035)
.+|.-|..+...|.+
T Consensus 391 ~~~~~~~~v~~aI~~ 405 (520)
T PRK12704 391 KKYKESPVVINAIAA 405 (520)
T ss_pred HHcCCCHHHHHHHHH
Confidence 344455555555443
No 376
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=52.92 E-value=2.3e+02 Score=27.71 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccchh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAA-NSDGHTQK------MQDGHTLKLKALEAQILELKKKQESQVELLKQ 603 (1035)
Q Consensus 531 ~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~-~~~~~~~K------Lke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~ 603 (1035)
+++..++..+-.++..++.+..+....+.+++. ..|...-| ++..+..-..+|+..+..|..+.+. |.+.
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~t---LekQ 92 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKT---LEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHH
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 001664 604 KHKSDEAAKRLQAEIQSI 621 (1035)
Q Consensus 604 k~k~e~~~~~L~~ei~~m 621 (1035)
-++.+.++..|+.+|..+
T Consensus 93 e~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 93 EEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
No 377
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=52.76 E-value=4e+02 Score=30.37 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccccccchhhhhh
Q 001664 500 MDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA----ANSDGHTQKMQDG 575 (1035)
Q Consensus 500 l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~----~~~~~~~~KLke~ 575 (1035)
..++-.+....|+..-+.++.+..........+..+.|.++...|..++++.+.|...+.... ........-+-..
T Consensus 46 Ar~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~ 125 (301)
T PF06120_consen 46 ARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINH 125 (301)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHH
Confidence 334445555555555555555543333344444556666666666666666666666664331 1111011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (1035)
Q Consensus 576 ~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~k 630 (1035)
+ ..+.+....+..+..+. ............++...+..+..+..+.+.+++
T Consensus 126 ~-~~~~~~t~~la~~t~~L---~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir 176 (301)
T PF06120_consen 126 L-MSQADATRKLAEATREL---AVAQERLEQMQSKASETQATLNDLTEQRIDLIR 176 (301)
T ss_pred H-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12333332233222221 112222233444566677777777888887664
No 378
>PF13514 AAA_27: AAA domain
Probab=52.71 E-value=7.5e+02 Score=33.52 Aligned_cols=57 Identities=28% Similarity=0.296 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001664 381 MQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVE 439 (1035)
Q Consensus 381 i~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~~~E 439 (1035)
|..+..++..++.++.... ....++..+...+..++.+...+..++...+.+...++
T Consensus 152 in~~l~~l~e~~~~l~~~~--~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~le 208 (1111)
T PF13514_consen 152 INQALKELKELERELREAE--VRAAEYQELQQALEEAEEELEELRAELKELRAELRRLE 208 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555655554331 22566777777777777777777777776666555444
No 379
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=52.47 E-value=7.8 Score=46.15 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.1
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556678876 888899999999874
No 380
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.32 E-value=1.2e+02 Score=37.38 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhHHHH
Q 001664 797 RIASLENMLNMSSKALVEMASQLSEAE 823 (1035)
Q Consensus 797 ~i~~Le~~~~~~~~~i~~l~~ql~~~e 823 (1035)
.+..|+..+....+.+..++.++.-++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~ 98 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALK 98 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544455555555444443
No 381
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=52.14 E-value=6.1 Score=41.79 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=13.9
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
...||..|+.|||||+++
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 456788899999999887
No 382
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=51.97 E-value=3.6e+02 Score=29.61 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001664 675 KMVLQRKTEEAAIATKRL 692 (1035)
Q Consensus 675 ~~vL~rK~eE~~a~~krL 692 (1035)
+-.|++-++|+..+|.-|
T Consensus 107 keql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 107 KEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHhccHH
Confidence 334555555555555444
No 383
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=51.72 E-value=7.1 Score=45.65 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.1
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
..-|.-.||||.|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 555666799999999998
No 384
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=51.70 E-value=2.3e+02 Score=27.19 Aligned_cols=7 Identities=43% Similarity=0.572 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 001664 578 LKLKALE 584 (1035)
Q Consensus 578 ~kL~eLE 584 (1035)
.+|..|+
T Consensus 16 n~La~Le 22 (107)
T PF09304_consen 16 NRLASLE 22 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 385
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.61 E-value=12 Score=41.39 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccccchhhHHHhh-cCCCccEEeeccCCCCccccc--------cCCCCCCCcccc
Q 001664 65 FGECVAPLVDGLF-QGYNATVLAYGQTGSGKTYTM--------GTGLREGFQTGL 110 (1035)
Q Consensus 65 y~~~v~plV~~~l-~G~n~tI~aYGqTGSGKTyTm--------~G~~~~~~~~Gi 110 (1035)
|+..-..||.... +||.-.|+|.|.||.|||+.| .+.+.+...+++
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V 79 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNV 79 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCc
No 386
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=51.56 E-value=3.6e+02 Score=29.45 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001664 534 GKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKM-QDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDE 609 (1035)
Q Consensus 534 e~kl~eLEeei~~LqkErd~Ll~~l~~~~~~---~~~~~~KL-ke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~ 609 (1035)
..+..+|+..+...-++.+.+..++..+... .......+ -.+.+++|.....++..++ ...+.....-.....
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q---~~l~~~~~~l~~~~~ 113 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQ---EQLQQENSQLIEIQT 113 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHc
Confidence 3445555555555555555555555554221 11111111 2344555555554444433 333333334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHH
Q 001664 610 AAKRLQAEIQSIKAQKVQLQNKIK-------QEAEQFRQWKASREKELLKLKKEGRKNEFE-RHKLEALNQRQKMVLQRK 681 (1035)
Q Consensus 610 ~~~~L~~ei~~mK~~kv~L~kkmk-------ee~~~~r~~~~~~~kEi~qLk~~~rK~e~e-i~~L~~~~~~q~~vL~rK 681 (1035)
....++..|.+.....-++-..+. ......+.|....+.....++-.....+-. ...+......+...+..+
T Consensus 114 ~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~ 193 (240)
T PF12795_consen 114 RPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKAR 193 (240)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH
Confidence 566667777777777777766666 455677777777666665544444333332 344555777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001664 682 TEEAAIATKRLKELLEARK 700 (1035)
Q Consensus 682 ~eE~~a~~krLke~le~~k 700 (1035)
+..+...+.-|++.+-.++
T Consensus 194 ~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 194 IQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888887776543
No 387
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.53 E-value=2.3e+02 Score=29.14 Aligned_cols=57 Identities=28% Similarity=0.370 Sum_probs=37.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001664 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA 563 (1035)
Q Consensus 497 q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~ 563 (1035)
-..+..++.+|...+..+++++..+...-+ ..+|...|..++.|...+...|..+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t----------~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPT----------NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777766542211 245666677777777777777777643
No 388
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=51.40 E-value=4.2e+02 Score=30.27 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 001664 753 QAALADELTILKQ 765 (1035)
Q Consensus 753 R~~l~~El~~Lk~ 765 (1035)
.+.+.+|+..||.
T Consensus 268 ~K~lKeEmeSLke 280 (561)
T KOG1103|consen 268 QKMLKEEMESLKE 280 (561)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555543
No 389
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=51.26 E-value=3.3e+02 Score=28.94 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 001664 405 DEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (1035)
Q Consensus 405 ~e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~~~E~ 440 (1035)
.++..++.+|..|+.+.+.-+..+......+.++++
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq 39 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQ 39 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666666666655555555555555555544
No 390
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=51.17 E-value=6.3 Score=33.85 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.8
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999887
No 391
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=51.04 E-value=3.9e+02 Score=29.74 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHH
Q 001664 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK-----KKQESQVELLKQKHKSDEAA 611 (1035)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lk-----kk~~~~~~l~k~k~k~e~~~ 611 (1035)
+.+|.....-|.+....|...+.+++..+..++.++=.+| .-+-.-++.|. ..+..+++|..++.+.+.++
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy----~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l 83 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQY----DIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKL 83 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHH----HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHH
Confidence 4445555555556666666666666544444444443333 22222222222 33444566777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 001664 612 KRLQAEIQSIKAQK 625 (1035)
Q Consensus 612 ~~L~~ei~~mK~~k 625 (1035)
..|+.++..+++..
T Consensus 84 ~~Lq~ql~~l~akI 97 (258)
T PF15397_consen 84 SKLQQQLEQLDAKI 97 (258)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766665554433
No 392
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=50.86 E-value=7.7 Score=45.16 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=28.9
Q ss_pred EeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCcccc
Q 001664 49 TFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYT 97 (1035)
Q Consensus 49 ~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyT 97 (1035)
+||.|+| |+.+... ..||-..+-.|--.+.+-||+.|+|||..
T Consensus 22 ~lde~vG-----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG-----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC-----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4566663 3444443 34555555567777788899999999975
No 393
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=50.75 E-value=6.4 Score=45.44 Aligned_cols=38 Identities=29% Similarity=0.535 Sum_probs=27.2
Q ss_pred cEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhh
Q 001664 83 TVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE 143 (1035)
.|+-||.+||||||+. +.+|+... .-.|.++++|-|.=
T Consensus 32 ~~~iyG~sgTGKT~~~-----------------r~~l~~~n------~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV-----------------RQLLRKLN------LENVWLNCVECFTY 69 (438)
T ss_pred eEEEeccCCCchhHHH-----------------HHHHhhcC------CcceeeehHHhccH
Confidence 3588999999999997 33454431 23588888888753
No 394
>PF15456 Uds1: Up-regulated During Septation
Probab=50.66 E-value=1.7e+02 Score=28.82 Aligned_cols=49 Identities=18% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 859 RFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIA 907 (1035)
Q Consensus 859 r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~ 907 (1035)
+-...+.+.++.++..+++++...+..++.+..++...+-++-.+|.++
T Consensus 73 ~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~AavL~l 121 (124)
T PF15456_consen 73 RESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLEHTAAVLQL 121 (124)
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999998888887777654
No 395
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.64 E-value=8.4 Score=45.74 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=19.0
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+..++.|.| |++.++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 3445678877 566789999999875
No 396
>PF14992 TMCO5: TMCO5 family
Probab=50.31 E-value=4.1e+02 Score=29.85 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=30.1
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 836 NHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQR 890 (1035)
Q Consensus 836 ~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~ 890 (1035)
..-+++.+.+..++.+....+..+.+....+....+...-.++.-..+..+...+
T Consensus 106 ~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L 160 (280)
T PF14992_consen 106 QLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL 160 (280)
T ss_pred chhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667666666666666666665555554444444333333333333
No 397
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=50.28 E-value=6.7 Score=42.53 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=17.2
Q ss_pred EEeeccCCCCccccc--cCCCCCCCcccc
Q 001664 84 VLAYGQTGSGKTYTM--GTGLREGFQTGL 110 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm--~G~~~~~~~~Gi 110 (1035)
|.-.|++|||||+-| .|+...+ ..|.
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~p-t~G~ 61 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDKP-TSGE 61 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC-CCce
Confidence 456799999999886 4444333 3444
No 398
>PRK12704 phosphodiesterase; Provisional
Probab=50.27 E-value=5.7e+02 Score=31.47 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 001664 624 QKVQLQNKIKQEA 636 (1035)
Q Consensus 624 ~kv~L~kkmkee~ 636 (1035)
.|..|+.++++++
T Consensus 155 a~~~l~~~~~~~~ 167 (520)
T PRK12704 155 AKEILLEKVEEEA 167 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 399
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=50.24 E-value=9.6 Score=45.87 Aligned_cols=17 Identities=53% Similarity=0.751 Sum_probs=15.4
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56899999999999987
No 400
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=50.13 E-value=6.6e+02 Score=32.12 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 646 REKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 646 ~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
|+.||..|++--|--+.-|.+|..
T Consensus 534 rDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 534 RDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555555555555
No 401
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.74 E-value=2.9e+02 Score=27.82 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=43.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001664 601 LKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (1035)
Q Consensus 601 ~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~rK~e~ei~~L~~ 669 (1035)
...-...+.++..++.....++.+...+..++|.+.+.+...+.....--.|..-+.||++.|+.+|+.
T Consensus 79 ~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 79 KEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555556666666666666666666666666666655555666677777777777777764
No 402
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.70 E-value=3.7e+02 Score=29.12 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 001664 670 LNQRQKMVLQRKTEEA 685 (1035)
Q Consensus 670 ~~~~q~~vL~rK~eE~ 685 (1035)
.-.++.++++||..++
T Consensus 130 ~~Ka~e~~~kRkQdsa 145 (246)
T KOG4657|consen 130 LSKAKENAGKRKQDSA 145 (246)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3445555566655443
No 403
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=49.49 E-value=5.2e+02 Score=30.73 Aligned_cols=89 Identities=17% Similarity=0.258 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001664 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (1035)
Q Consensus 533 ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~ 612 (1035)
-+--+..|..+.+.+..|++.-..=++-+++.. +.- .+ .++-.++..++.+ -.+|...+.+++.+-.
T Consensus 141 ~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~-----~~~-~~----~~~~~e~~~l~~e---E~~L~q~lk~le~~~~ 207 (447)
T KOG2751|consen 141 MDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQN-----QDV-SE----EDLLKELKNLKEE---EERLLQQLEELEKEEA 207 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----ccc-ch----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 334455566666666666666555555443221 110 22 2222222334333 3345555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001664 613 RLQAEIQSIKAQKVQLQNKIKQ 634 (1035)
Q Consensus 613 ~L~~ei~~mK~~kv~L~kkmke 634 (1035)
.+-.++.+....++++-.++-+
T Consensus 208 ~l~~~l~e~~~~~~~~~e~~~~ 229 (447)
T KOG2751|consen 208 ELDHQLKELEFKAERLNEEEDQ 229 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665444433
No 404
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.16 E-value=8.3 Score=43.10 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=19.7
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
-+++.++.. +--|+-+|++|||||-++
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 344444443 567788999999999887
No 405
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.14 E-value=6.6e+02 Score=31.82 Aligned_cols=23 Identities=26% Similarity=0.098 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001664 675 KMVLQRKTEEAAIATKRLKELLE 697 (1035)
Q Consensus 675 ~~vL~rK~eE~~a~~krLke~le 697 (1035)
...++|+.-|+.-++.+++...+
T Consensus 169 ~~~~qe~naeL~rarqreemnee 191 (916)
T KOG0249|consen 169 EEQLEELNAELQRARQREKMNEE 191 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34456666666666666655444
No 406
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=49.01 E-value=4.4 Score=46.86 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=30.1
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|.|+.|-|. +++ ..-|+..+.+-.-+.|+-+|.+||||||++
T Consensus 12 ~~~pf~~ivGq-----~~~----k~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ-----EEM----KLALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh-----HHH----HHHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 36899999864 332 334444444433356889999999999987
No 407
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.92 E-value=6.9 Score=42.59 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=45.5
Q ss_pred EEeceEeCCCCCCCcccccccchhhHHHhh---cCCC--ccEEeeccCCCCccccccC-------CCC----C---CCcc
Q 001664 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLF---QGYN--ATVLAYGQTGSGKTYTMGT-------GLR----E---GFQT 108 (1035)
Q Consensus 48 F~FD~VF~~~~s~q~~vy~~~v~plV~~~l---~G~n--~tI~aYGqTGSGKTyTm~G-------~~~----~---~~~~ 108 (1035)
.+|..|=+-+. +.++|-+.+--|+...-+ =|.+ -.|+.||+.|+|||...-. .|- + ..-.
T Consensus 152 vsy~diggld~-qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl 230 (408)
T KOG0727|consen 152 VSYADIGGLDV-QKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 230 (408)
T ss_pred ccccccccchh-hHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence 34444444332 334555555556666543 1543 4589999999999854310 000 0 0123
Q ss_pred cchhHHHHHHHHHHHhhcc
Q 001664 109 GLIPQVMNALFNKIETLRH 127 (1035)
Q Consensus 109 Giipr~~~~LF~~i~~~~~ 127 (1035)
|-=||.++++|.......+
T Consensus 231 gegprmvrdvfrlakenap 249 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLAKENAP 249 (408)
T ss_pred ccCcHHHHHHHHHHhccCC
Confidence 6669999999987765433
No 408
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=48.86 E-value=8 Score=51.54 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=0.0
Q ss_pred ccchhhHHHhhcCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHH
Q 001664 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMN 116 (1035)
Q Consensus 67 ~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~ 116 (1035)
.++..+++.+-.|...+++. .+||||||+|| .+++-+.+.
T Consensus 420 ~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~ta---------i~li~~L~~ 459 (1123)
T PRK11448 420 DAIQAVEKAIVEGQREILLA-MATGTGKTRTA---------IALMYRLLK 459 (1123)
T ss_pred HHHHHHHHHHHhccCCeEEE-eCCCCCHHHHH---------HHHHHHHHh
No 409
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=48.69 E-value=2e+02 Score=30.24 Aligned_cols=109 Identities=24% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCCccccccchhccccccccccchh
Q 001664 392 QAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQ 471 (1035)
Q Consensus 392 q~eL~~~~~~~~~~e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 471 (1035)
+++|..+--....+.+..+-+.-..+.+-|..|+..|.+.+.-...-.....+
T Consensus 18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqed--------------------------- 70 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQED--------------------------- 70 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Q ss_pred hhhhhhcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHhhccccHHHHHHH---HHHHHHHHH
Q 001664 472 MDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQ-------KESEMKLFGDIDTEALRHH---FGKKIMELE 541 (1035)
Q Consensus 472 l~e~~~~~~~~~~eee~~e~e~~~~q~~l~~El~eL~kqLe~-------kE~~~k~~~~~d~~~~k~~---ye~kl~eLE 541 (1035)
++||.+|-.=|++ ...+-+.|+++-..+|++. |..||.+||
T Consensus 71 -----------------------------NqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE 121 (195)
T PF10226_consen 71 -----------------------------NQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELE 121 (195)
T ss_pred -----------------------------HHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 001664 542 EEKRIVQQERDRLLA 556 (1035)
Q Consensus 542 eei~~LqkErd~Ll~ 556 (1035)
.....|-+|..+|.+
T Consensus 122 ~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 122 DKQEELIRENLELKE 136 (195)
T ss_pred HHHHHHHHhHHHHHH
No 410
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.69 E-value=3.9e+02 Score=31.25 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001664 540 LEEEKRIVQQERDRLLAEIE 559 (1035)
Q Consensus 540 LEeei~~LqkErd~Ll~~l~ 559 (1035)
......++..+...-++.+.
T Consensus 239 ~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 239 TKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 411
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=48.57 E-value=7.5 Score=42.76 Aligned_cols=12 Identities=58% Similarity=0.880 Sum_probs=11.2
Q ss_pred eccCCCCccccc
Q 001664 87 YGQTGSGKTYTM 98 (1035)
Q Consensus 87 YGqTGSGKTyTm 98 (1035)
.|++|||||+||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 499999999998
No 412
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=48.49 E-value=3.6e+02 Score=28.60 Aligned_cols=32 Identities=22% Similarity=0.121 Sum_probs=14.4
Q ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Q 001664 729 LEHELEVS-ANVHEVRFKYEKQSQVQAALADEL 760 (1035)
Q Consensus 729 l~~ElE~~-~~~~e~~~~~e~l~e~R~~l~~El 760 (1035)
+..|+|-+ ..+...+-....+++.+..+++|-
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555 333333333344444444444443
No 413
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=48.46 E-value=2.7e+02 Score=31.77 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (1035)
Q Consensus 577 e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmk 633 (1035)
.-.|.++| ..-++.--.-++|.-.|..+--++..|.+.|.+|..+..++.|..+
T Consensus 83 k~~l~evE---ekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 83 KDSLAEVE---EKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHHH---HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666 5666777778888888888888999999999999888888555543
No 414
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=48.33 E-value=10 Score=45.53 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=20.0
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+..+++|.| |++.++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3556678887 678889999999875
No 415
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=48.23 E-value=7.5 Score=47.73 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=31.3
Q ss_pred eeEEeceEeCCCCCCCcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 46 ~~F~FD~VF~~~~s~q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
+..+|+.+++.+. .+..+...++.+....|+-||++|+|||+.-
T Consensus 60 rp~~f~~iiGqs~---------~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQEE---------GIKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcHH---------HHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4567888886431 1344455566677788899999999999864
No 416
>PF14282 FlxA: FlxA-like protein
Probab=48.22 E-value=76 Score=30.27 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001664 535 KKIMELEEEKRIVQQERDRL 554 (1035)
Q Consensus 535 ~kl~eLEeei~~LqkErd~L 554 (1035)
..|..|+.+|..|+.+...|
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 417
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=48.15 E-value=7.5 Score=42.08 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=15.9
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
...++-||.+|+|||++.
T Consensus 12 ~~~~liyG~~G~GKtt~a 29 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTI 29 (220)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 455899999999999987
No 418
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=48.13 E-value=2.1e+02 Score=25.89 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=6.7
Q ss_pred HHhhHHHHHHHHHHHH
Q 001664 603 QKHKSDEAAKRLQAEI 618 (1035)
Q Consensus 603 ~k~k~e~~~~~L~~ei 618 (1035)
+|.+.|.+|..|..+|
T Consensus 58 mK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 58 MKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 419
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=48.05 E-value=7.5 Score=46.09 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.5
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
+--++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 456789999999999877
No 420
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=47.92 E-value=8.2 Score=46.03 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=21.5
Q ss_pred CCCCceeEEEeecCCCCCCHHHHHHHHHHHHHhh
Q 001664 331 LGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (1035)
Q Consensus 331 LgGns~t~mI~~vSP~~~~~~ETl~TL~fa~rar 364 (1035)
+.-..+..+|||++.++.+ +..|.+|-+=|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRR 349 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRR 349 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhh
Confidence 4557899999999998864 44566665433
No 421
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=47.92 E-value=9.9 Score=48.05 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=20.1
Q ss_pred chhhHHHhhc-----CCCccEEeeccCCCCcccccc
Q 001664 69 VAPLVDGLFQ-----GYNATVLAYGQTGSGKTYTMG 99 (1035)
Q Consensus 69 v~plV~~~l~-----G~n~tI~aYGqTGSGKTyTm~ 99 (1035)
|..+++.+.. |.+..|+. -+||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 4456666665 34455544 489999999993
No 422
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=47.89 E-value=7.3 Score=45.37 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.4
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
...|+-||++|+|||++.
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345899999999999887
No 423
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=47.89 E-value=6e+02 Score=31.01 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=8.2
Q ss_pred ceeEEEeecCCCC
Q 001664 335 SKTVMIACISPAD 347 (1035)
Q Consensus 335 s~t~mI~~vSP~~ 347 (1035)
++..+|-+|.|..
T Consensus 49 ~~y~ii~~vd~~~ 61 (489)
T PF05262_consen 49 GRYYIIHAVDPEE 61 (489)
T ss_pred CcEEEEEecCccc
Confidence 4566777776653
No 424
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=47.83 E-value=9 Score=43.21 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.9
Q ss_pred cCCCccEEeeccCCCCccccc
Q 001664 78 QGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 78 ~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 454445788999999999887
No 425
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=47.75 E-value=5.8e+02 Score=32.51 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001664 578 LKLKALEAQILELKKKQE 595 (1035)
Q Consensus 578 ~kL~eLE~el~~Lkkk~~ 595 (1035)
+++..|..++..|+++..
T Consensus 241 ~~i~~l~~~l~~l~~~~~ 258 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELK 258 (670)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 335555544444444333
No 426
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=47.42 E-value=24 Score=42.52 Aligned_cols=27 Identities=19% Similarity=0.511 Sum_probs=19.6
Q ss_pred HHhhcCCC------ccEEeeccCCCCccccccC
Q 001664 74 DGLFQGYN------ATVLAYGQTGSGKTYTMGT 100 (1035)
Q Consensus 74 ~~~l~G~n------~tI~aYGqTGSGKTyTm~G 100 (1035)
..++.|.| -.|+-+|++|||||+.|-+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHhc
Confidence 34566633 4467789999999999853
No 427
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=47.40 E-value=9.7e+02 Score=33.29 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=12.6
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
++-.|++|||||.+|
T Consensus 27 ~~~~G~NGsGKS~~l 41 (1353)
T TIGR02680 27 LLLRGNNGAGKSKVL 41 (1353)
T ss_pred EEEECCCCCcHHHHH
Confidence 345699999999998
No 428
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=47.24 E-value=2.6e+02 Score=26.66 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHhHHH
Q 001664 795 MERIASLENMLNMSSKALVEMASQLSEA 822 (1035)
Q Consensus 795 ~~~i~~Le~~~~~~~~~i~~l~~ql~~~ 822 (1035)
......+++.+.....++..+..++.+.
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~ 36 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEA 36 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555554
No 429
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.13 E-value=6.6 Score=45.74 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=20.3
Q ss_pred hhhHHHhhcC-CCccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~G-~n~tI~aYGqTGSGKTyTm 98 (1035)
..+...+-.| ..-+++-||+.|+|||++.
T Consensus 26 ~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 26 TAISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred HHHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 3444444444 3456789999999999886
No 430
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=46.98 E-value=7.8 Score=38.37 Aligned_cols=15 Identities=53% Similarity=0.853 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
++-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 567999999999987
No 431
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.95 E-value=3.5e+02 Score=28.09 Aligned_cols=12 Identities=8% Similarity=0.260 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 001664 577 TLKLKALEAQIL 588 (1035)
Q Consensus 577 e~kL~eLE~el~ 588 (1035)
+..+.+|..++.
T Consensus 57 ~a~~~eLr~el~ 68 (177)
T PF07798_consen 57 KAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 432
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=46.93 E-value=5.3e+02 Score=30.08 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=50.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 571 KMQDGHTLKLKALEAQILELK----KKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQW 642 (1035)
Q Consensus 571 KLke~~e~kL~eLE~el~~Lk----kk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~ 642 (1035)
-|+..|-..++.+..+|.-|- .|.-+-+.|...-...+..+...+.|=+++-+--..|-.++-.|..+.|..
T Consensus 414 aLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtl 489 (593)
T KOG4807|consen 414 ALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTL 489 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455566666666666666664 555666777777777777777788888887777777777777777777654
No 433
>PLN03025 replication factor C subunit; Provisional
Probab=46.91 E-value=9.7 Score=43.47 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=15.7
Q ss_pred CCCccEEeeccCCCCccccc
Q 001664 79 GYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 79 G~n~tI~aYGqTGSGKTyTm 98 (1035)
|.-..++-||++|+|||++.
T Consensus 32 ~~~~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSI 51 (319)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33334677999999999998
No 434
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=46.82 E-value=31 Score=40.60 Aligned_cols=52 Identities=29% Similarity=0.388 Sum_probs=32.6
Q ss_pred cCCCccEEeeccCCCCccccccCCCCCCCcccchhHHHHHHHHHHHhhcccceEEEEeehhhhhhhHHhhhcC
Q 001664 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLD 150 (1035)
Q Consensus 78 ~G~n~tI~aYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~ 150 (1035)
.|.-++| +|+.|+||| || +..|++.+... ..++.+.|..+.=+-++|.|+..
T Consensus 168 kGQR~lI--vgppGvGKT-TL----------------aK~Ian~I~~n--hFDv~~~VvLIgER~~EVtdiqr 219 (416)
T PRK09376 168 KGQRGLI--VAPPKAGKT-VL----------------LQNIANSITTN--HPEVHLIVLLIDERPEEVTDMQR 219 (416)
T ss_pred cCceEEE--eCCCCCChh-HH----------------HHHHHHHHHhh--cCCeEEEEEEeCCchhHHHHHHH
Confidence 4555555 589999999 44 45577776653 23344444444446678888874
No 435
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=46.65 E-value=23 Score=43.47 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.5
Q ss_pred cCCCcEEEcCceEEEcCCHHHHHHHHHhcccCc
Q 001664 180 SSNGVITLAGSTEVAVNTLQEMAACLEQGSLSR 212 (1035)
Q Consensus 180 ~~~~~~~v~glte~~V~s~~e~~~ll~~g~~~R 212 (1035)
..+|.+++.++.+.+..--..++.+|..+.-.|
T Consensus 321 A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 321 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 346778888888888777778888887765444
No 436
>PRK04328 hypothetical protein; Provisional
Probab=46.57 E-value=12 Score=41.20 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=21.6
Q ss_pred hhHHHhhcC---CCccEEeeccCCCCcccc
Q 001664 71 PLVDGLFQG---YNATVLAYGQTGSGKTYT 97 (1035)
Q Consensus 71 plV~~~l~G---~n~tI~aYGqTGSGKTyT 97 (1035)
|-+|.++.| ...+++-+|++|||||.-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 456778876 578889999999999754
No 437
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=46.28 E-value=7.2e+02 Score=31.46 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 495 LWQNTMDKELNELNKRLEQKESEMKLFGDIDT-EALRHHFGKKIMELEEEKRIVQQERDRLLA 556 (1035)
Q Consensus 495 ~~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~-~~~k~~ye~kl~eLEeei~~LqkErd~Ll~ 556 (1035)
.++..+.+--.+|..+....+...+-++...+ ....+.++..-.+|-+.+..|+++|+.|-.
T Consensus 201 ~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~ 263 (739)
T PF07111_consen 201 LLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQA 263 (739)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444432221 212222333344555555566666655443
No 438
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=46.21 E-value=7.5 Score=45.31 Aligned_cols=34 Identities=15% Similarity=0.395 Sum_probs=24.7
Q ss_pred CcccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 61 SSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 61 q~~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
|..+|+.++..+ .......+|..|+.|+||||.+
T Consensus 6 Q~~~~~~v~~~~----~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 6 QRRVFDTVIEAI----ENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHH----HccCCcEEEEEcCCCCChhHHH
Confidence 567777654433 3345567788999999999997
No 439
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.97 E-value=6.6e+02 Score=30.92 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=21.9
Q ss_pred CcceeeeccccceeeeeeecccCcchhhhhhhccchhhhccCCCch
Q 001664 984 GKLWRWKRSHHQWLLQFKWKWQKPWKLSEWIKHSDETIMKSRPRPQ 1029 (1035)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1035)
..+..+-++||- . ..|..+--||-+-...+...||..+
T Consensus 391 ~~V~~aI~~HH~-~-------~~~~~~~a~IV~~AD~lsa~rpgar 428 (514)
T TIGR03319 391 PEVVNAIAAHHG-D-------VEPTSIEAVLVAAADALSAARPGAR 428 (514)
T ss_pred HHHHHHHHHhCC-C-------CCCCCHHHHHHHHHHHhcCCCCCCc
Confidence 345555566773 1 1455556666666666666777654
No 440
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=45.68 E-value=8.1 Score=39.99 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.3
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
+..+-||++|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567899999999987
No 441
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=45.64 E-value=1.7e+02 Score=31.76 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=21.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001664 599 ELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (1035)
Q Consensus 599 ~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L 628 (1035)
++..-.-..+..+..|+.+|.++|+...++
T Consensus 186 ~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 186 ELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567778888888888888877763
No 442
>PRK04195 replication factor C large subunit; Provisional
Probab=45.64 E-value=11 Score=45.66 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=21.4
Q ss_pred chhhHHHhhcCC-CccEEeeccCCCCccccc
Q 001664 69 VAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 69 v~plV~~~l~G~-n~tI~aYGqTGSGKTyTm 98 (1035)
+...+.....|. ...++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344444444554 556888999999999887
No 443
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=45.38 E-value=11 Score=42.89 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=19.4
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+++..++.+. .+|+-.|+||||||+.|
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 34455555433 46677799999999987
No 444
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.34 E-value=5.3e+02 Score=29.90 Aligned_cols=85 Identities=22% Similarity=0.245 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q 001664 500 MDKELNELNKRLEQKESEMKLFGD----IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG 575 (1035)
Q Consensus 500 l~~El~eL~kqLe~kE~~~k~~~~----~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~ 575 (1035)
+++++.++..+++.-|..+..+.. .+...--..+...+.+|+.++..++.+...+.. ...+..-.+. .
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~-------~~~~~~P~v~-~ 246 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS-------ITPEQNPQVP-S 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCCCchH-H
Confidence 456667777777777766665531 122211111334455555555555444433322 1122222221 1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001664 576 HTLKLKALEAQILELKK 592 (1035)
Q Consensus 576 ~e~kL~eLE~el~~Lkk 592 (1035)
.+.++..|+.+|....+
T Consensus 247 l~~~i~~l~~~i~~e~~ 263 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRN 263 (362)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 23556666666555443
No 445
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=45.32 E-value=11 Score=43.67 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=22.4
Q ss_pred chhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 69 v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
...++..++.+ .+.|+-.|.||||||.+|
T Consensus 167 ~~~~L~~~v~~-~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAA-RLAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhC-CCeEEEECCCCCCHHHHH
Confidence 44566666665 478888999999999887
No 446
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=45.27 E-value=7.5e+02 Score=31.36 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (1035)
Q Consensus 501 ~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~ 560 (1035)
+.||...+..++.-++--+.+.+.-.+-+.-|..+.+..|++ +..|..|.+.+..++..
T Consensus 176 naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~-kn~L~~e~~s~kk~l~~ 234 (916)
T KOG0249|consen 176 NAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALED-KNRLEQELESVKKQLEE 234 (916)
T ss_pred HHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 444555544444433322222211112233333344444432 33344444444444443
No 447
>PF05729 NACHT: NACHT domain
Probab=45.27 E-value=9.1 Score=38.19 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.3
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
.|+-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999988
No 448
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.13 E-value=1.5e+02 Score=31.37 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001664 570 QKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (1035)
Q Consensus 570 ~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~ 627 (1035)
.=++.++++-|+=.+.++.+|.. -+.+....++...++|..++.|---
T Consensus 131 ~lvk~e~EqLL~YK~~ql~~~~~----------~~~~~~~~l~~v~~Dl~~ie~QV~~ 178 (195)
T PF12761_consen 131 ALVKREFEQLLDYKERQLRELEE----------GRSKSGKNLKSVREDLDTIEEQVDG 178 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc----------cCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455555555444444433321 1223334445555555555544444
No 449
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=45.11 E-value=3.4e+02 Score=31.93 Aligned_cols=116 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 001664 529 LRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK----KKQESQVELLKQK 604 (1035)
Q Consensus 529 ~k~~ye~kl~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lk----kk~~~~~~l~k~k 604 (1035)
++.+.++++..|+.++..-++.-..+.+++.-+..++....+|+ ...|--|..|+.|...|. +..-+-..+.+..
T Consensus 7 ~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~-~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~ 85 (459)
T KOG0288|consen 7 QKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKL-QEKELELNRLQEENTQLNEERVREEATEKTLTVDV 85 (459)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKAS 645 (1035)
Q Consensus 605 ~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~ 645 (1035)
...|..--.+..||.++..+++..+.++=-.-+..|+.+..
T Consensus 86 ~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~ 126 (459)
T KOG0288|consen 86 LIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIA 126 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHH
No 450
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.08 E-value=1.1e+02 Score=33.99 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHHHhhchHHHHHHHHHhHHHHHHHHhhhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 788 SLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDT 867 (1035)
Q Consensus 788 ~l~~~~r~~~i~~Le~~~~~~~~~i~~l~~ql~~~e~r~~~~~~k~r~~~~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~ 867 (1035)
++.......+++.|+.++..++..+.+|+.||+++. .
T Consensus 32 ~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq-------------------------------------------~ 68 (263)
T PRK10803 32 SVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQ-------------------------------------------S 68 (263)
T ss_pred HcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------------------------------------------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 868 EIKEIKEQLNDLVALLKQSEAQRKELVKQQRMR 900 (1035)
Q Consensus 868 ~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~ 900 (1035)
+|.+|+-+++++..++.++..+..++..++..+
T Consensus 69 ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 69 DIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 451
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=45.03 E-value=10 Score=40.15 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=18.4
Q ss_pred HHhhcCC---CccEEeeccCCCCccccc
Q 001664 74 DGLFQGY---NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 74 ~~~l~G~---n~tI~aYGqTGSGKTyTm 98 (1035)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4445443 567889999999999765
No 452
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.74 E-value=26 Score=42.51 Aligned_cols=19 Identities=47% Similarity=0.578 Sum_probs=15.4
Q ss_pred CCccEEeeccCCCCccccc
Q 001664 80 YNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 80 ~n~tI~aYGqTGSGKTyTm 98 (1035)
...-|+|+++||||||+..
T Consensus 172 ~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 172 EKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccceEEeccCCCcchhhh
Confidence 3445799999999998776
No 453
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.60 E-value=9.2 Score=45.56 Aligned_cols=17 Identities=47% Similarity=0.601 Sum_probs=14.5
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
..|+-.|+||+|||+|+
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667799999999998
No 454
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=44.53 E-value=9.6 Score=42.87 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=21.1
Q ss_pred hhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.||+ ..+.--+..|--||+|++|||.++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3444 445556677889999999999987
No 455
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.50 E-value=4.3e+02 Score=28.31 Aligned_cols=184 Identities=16% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCCccccccchhccccc
Q 001664 384 LRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQ 463 (1035)
Q Consensus 384 Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1035)
|...|..++..+... ...+.........++.+...+......+..+...+-....+
T Consensus 28 l~q~ird~e~~l~~a-----~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~e------------------- 83 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKA-----RQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGRE------------------- 83 (221)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-------------------
Q ss_pred cccccchhhhhhhhcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 001664 464 SIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEE 543 (1035)
Q Consensus 464 ~l~~~~~~l~e~~~~~~~~~~eee~~e~e~~~~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEee 543 (1035)
.--.+....+..+..++..+..+++........+. ..+..|+.+
T Consensus 84 ------------------------dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~------------~~l~~l~~k 127 (221)
T PF04012_consen 84 ------------------------DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLK------------EQLEELEAK 127 (221)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHh--hccccccchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------
Q 001664 544 KRIVQQERDRLLAEIENL--AANSDGHTQKMQ-DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL------ 614 (1035)
Q Consensus 544 i~~LqkErd~Ll~~l~~~--~~~~~~~~~KLk-e~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L------ 614 (1035)
+..++.+++.|....... ...-.....-+. ......+..++..|..+..+-.....+.....-.+.++..+
T Consensus 128 l~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~~~~~~~~ 207 (221)
T PF04012_consen 128 LEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELADSDQDLEAELEELERDSSV 207 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCcc
Q ss_pred -HHHHHHHHHHHHH
Q 001664 615 -QAEIQSIKAQKVQ 627 (1035)
Q Consensus 615 -~~ei~~mK~~kv~ 627 (1035)
.+++..||+.+.+
T Consensus 208 ~~~~La~LK~~~~~ 221 (221)
T PF04012_consen 208 SEDELAALKAKQGQ 221 (221)
T ss_pred hHHHHHHHHhHccC
No 456
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=44.22 E-value=9.4 Score=38.03 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=13.0
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
|+-+|.+|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999874
No 457
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.97 E-value=14 Score=44.66 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=20.1
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
..|..++.|.| +++..+||||||.+.
T Consensus 18 ~ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 45667788986 566689999999764
No 458
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=43.93 E-value=10 Score=40.65 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
+.-.|+.|||||.+|
T Consensus 28 ~~ivGpNGaGKSTll 42 (212)
T cd03274 28 SAIVGPNGSGKSNVI 42 (212)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999998
No 459
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=43.82 E-value=2.1e+02 Score=34.71 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 844 AKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIA 907 (1035)
Q Consensus 844 Ak~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~ 907 (1035)
.+-++..+.-++.+.+....++.++|.++..+++++.+.+-+-..++..|..+.+..+-+.--|
T Consensus 84 ~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 84 QKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 4444455567788888888999999999999999999888766666666655555444444333
No 460
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=43.80 E-value=5.5e+02 Score=29.43 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=33.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001664 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA 703 (1035)
Q Consensus 653 Lk~~~rK~e~ei~~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~~k~~~ 703 (1035)
|+.-.++.+.|-+.|+.+-+.-...-..|.||++..+++|.|++.-+..-.
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555667888999999999999887654433
No 461
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.78 E-value=13 Score=44.12 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=20.1
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
+...+-.+.-..++-||++|+|||++.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 444444566667788999999999886
No 462
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=43.73 E-value=13 Score=40.08 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=22.3
Q ss_pred hhhHHHhhcC---CCccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~G---~n~tI~aYGqTGSGKTyTm 98 (1035)
-+-+|.++.| ...++.-||++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3556777775 4566788999999999876
No 463
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=43.56 E-value=8.6 Score=48.79 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=25.4
Q ss_pred ccccccchhhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 63 AMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 63 ~vy~~~v~plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.||..+-.-.-.-.-.|.|-||+..|.+|||||+|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 455443222222233689999999999999999997
No 464
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=43.49 E-value=6.3e+02 Score=29.96 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=5.5
Q ss_pred cccccccccc
Q 001664 939 PKQLKFTPGI 948 (1035)
Q Consensus 939 ~~~~~~~~~~ 948 (1035)
.+.+.++||.
T Consensus 389 g~~~~l~~GM 398 (421)
T TIGR03794 389 GPDIKISAGT 398 (421)
T ss_pred CCCCcCCCCC
Confidence 3456666664
No 465
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=43.49 E-value=2.9e+02 Score=26.07 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=22.9
Q ss_pred HHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 653 LKKEGRKNEFE-RHKLEALNQRQKMVLQRKTEEAAIATKRLKELL 696 (1035)
Q Consensus 653 Lk~~~rK~e~e-i~~L~~~~~~q~~vL~rK~eE~~a~~krLke~l 696 (1035)
|..-+...+.+ +..|...+......|......+......|....
T Consensus 51 l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~ 95 (127)
T smart00502 51 LRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAI 95 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333 455555555555566666666665555554443
No 466
>PF13173 AAA_14: AAA domain
Probab=43.47 E-value=10 Score=36.93 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.8
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
-.++-+|+.|+|||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLL 19 (128)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35678999999999998
No 467
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=43.22 E-value=10 Score=45.10 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=18.9
Q ss_pred EEeeccCCCCccccccCCCCCCCcccchhHH
Q 001664 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQV 114 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm~G~~~~~~~~Giipr~ 114 (1035)
+|.||+.|||||.+. .--+||+|-.
T Consensus 201 Ll~~GpPGtGKTmla------~Rl~~lLPpl 225 (490)
T COG0606 201 LLLVGPPGTGKTMLA------SRLPGLLPPL 225 (490)
T ss_pred EEEecCCCCchHHhh------hhhcccCCCC
Confidence 677999999999886 2236777753
No 468
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=42.66 E-value=25 Score=43.33 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=37.5
Q ss_pred eceEeCCCCCCCcccccccchhhHHHhh--cCCCccEEeeccCCCCccc---------------cccC----CCCCCCcc
Q 001664 50 FDHVYGNGGSPSSAMFGECVAPLVDGLF--QGYNATVLAYGQTGSGKTY---------------TMGT----GLREGFQT 108 (1035)
Q Consensus 50 FD~VF~~~~s~q~~vy~~~v~plV~~~l--~G~n~tI~aYGqTGSGKTy---------------Tm~G----~~~~~~~~ 108 (1035)
|+.+||- +++-+.+|..+..++. ..-...++-.||+|+|||. ++-| ++-...-.
T Consensus 75 F~d~yGl-----ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 75 FEEFYGM-----EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPL 149 (644)
T ss_pred hhcccCc-----HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCC
Confidence 5666653 3444455555544433 3344456667999999994 4433 22223345
Q ss_pred cch-hHHHHHHHHH
Q 001664 109 GLI-PQVMNALFNK 121 (1035)
Q Consensus 109 Gii-pr~~~~LF~~ 121 (1035)
|+| |.-...+|..
T Consensus 150 ~L~p~~~~~~~le~ 163 (644)
T PRK15455 150 GLFDPDEDGPILEE 163 (644)
T ss_pred CCCChhhhHHHHHH
Confidence 888 4556666644
No 469
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=42.52 E-value=14 Score=40.37 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=28.1
Q ss_pred CccEEeeccCCCCccccc------cCCCC--CCCcccchhHHHHHHHHHHHh
Q 001664 81 NATVLAYGQTGSGKTYTM------GTGLR--EGFQTGLIPQVMNALFNKIET 124 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm------~G~~~--~~~~~Giipr~~~~LF~~i~~ 124 (1035)
+-+-..+|++|||||.|+ .|-+- -...+++=..++..||..+..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 344456999999999998 23211 012356777788888877755
No 470
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=42.50 E-value=9.9 Score=45.89 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.7
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
..|.-.|+||+|||+|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 45667799999999998
No 471
>PHA02244 ATPase-like protein
Probab=42.40 E-value=13 Score=43.29 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=17.5
Q ss_pred hhHHHhhcCCCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+...+-.|.+ |+-+|+||+|||+..
T Consensus 111 ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 111 DIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 33333334554 566999999999876
No 472
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.36 E-value=9.5e+02 Score=31.74 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.8
Q ss_pred EeeccCCCCccccc
Q 001664 85 LAYGQTGSGKTYTM 98 (1035)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (1035)
|-.|+.||||+...
T Consensus 46 mIiGpNGSGKSSiV 59 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIV 59 (1072)
T ss_pred eEECCCCCCchHHH
Confidence 45799999999875
No 473
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=42.35 E-value=10 Score=40.82 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=11.8
Q ss_pred EeeccCCCCccccc
Q 001664 85 LAYGQTGSGKTYTM 98 (1035)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (1035)
.-.|++|||||+.+
T Consensus 32 ~iiGpSGSGKSTlL 45 (240)
T COG1126 32 VIIGPSGSGKSTLL 45 (240)
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999876
No 474
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=42.31 E-value=15 Score=39.65 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=21.8
Q ss_pred hhhHHHhhc-CC--CccEEeeccCCCCccccc
Q 001664 70 APLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 70 ~plV~~~l~-G~--n~tI~aYGqTGSGKTyTm 98 (1035)
-|-+|.++. |+ ..+++.+|.+|||||+-.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 355677775 43 677888999999998765
No 475
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=42.16 E-value=11 Score=38.87 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.3
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
|+.+|+.|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999874
No 476
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=42.13 E-value=5e+02 Score=33.88 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=30.4
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 838 LRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLK 884 (1035)
Q Consensus 838 ~~s~~eAk~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~ 884 (1035)
..++.+|..+|..|.+++.+.+....+ ...-.++++.+++|...++
T Consensus 553 ~G~~~~A~q~L~qlq~mmenmq~~~~q-~~~~~~~~q~m~~L~dl~r 598 (820)
T PF13779_consen 553 SGRMDEARQLLEQLQQMMENMQNAQPQ-QQQQQEMQQAMEELGDLLR 598 (820)
T ss_pred cCCHHHHHHHHHHHHHHHHhccccCCC-chhhHHHHHHHHHHHHHHH
Confidence 356788999999999999887755544 2344455555555554443
No 477
>PRK07261 topology modulation protein; Provisional
Probab=42.10 E-value=11 Score=38.91 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 001664 84 VLAYGQTGSGKTYTM 98 (1035)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (1035)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999775
No 478
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=42.06 E-value=13 Score=46.60 Aligned_cols=25 Identities=44% Similarity=0.636 Sum_probs=19.8
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4455677866 788899999999886
No 479
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=42.02 E-value=8.7e+02 Score=31.18 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-hccccccchhhh
Q 001664 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRI-VQQERDRLLAEIENL-AANSDGHTQKMQ 573 (1035)
Q Consensus 496 ~q~~l~~El~eL~kqLe~kE~~~k~~~~~d~~~~k~~ye~kl~eLEeei~~-LqkErd~Ll~~l~~~-~~~~~~~~~KLk 573 (1035)
++..-++++.+|...++----+++..-+++.-.. +....|..+|+. |++|+.++.+-.... +...|+--.+-.
T Consensus 923 l~eeKDqei~EleailekQNca~eeakqn~eis~-----Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~ 997 (1424)
T KOG4572|consen 923 LIEEKDQEIEELEAILEKQNCAHEEAKQNDEISE-----EDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHE 997 (1424)
T ss_pred HHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 001664 574 DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL-------QNKIKQEAEQFRQWKASR 646 (1035)
Q Consensus 574 e~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L-------~kkmkee~~~~r~~~~~~ 646 (1035)
..++....++..++..++++.. ..-.++..+..+|-+||.--+.+ ...=+-..+.-=......
T Consensus 998 kefE~~mrdhrselEe~kKe~e----------aiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eae 1067 (1424)
T KOG4572|consen 998 KEFEIEMRDHRSELEEKKKELE----------AIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAE 1067 (1424)
T ss_pred HHHHHHHHHhHhhHHHHHHHHH----------HHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhh
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001664 647 EKELLKLKKEGRKNEFERHKLEALNQRQKMV 677 (1035)
Q Consensus 647 ~kEi~qLk~~~rK~e~ei~~L~~~~~~q~~v 677 (1035)
.-|+..++.++|-++.++.+....|.-+..+
T Consensus 1068 mdeik~~~~edrakqkei~k~L~ehelenLr 1098 (1424)
T KOG4572|consen 1068 MDEIKDGKCEDRAKQKEIDKILKEHELENLR 1098 (1424)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
No 480
>PRK00131 aroK shikimate kinase; Reviewed
Probab=41.99 E-value=11 Score=38.23 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.8
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
-+|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36889999999999884
No 481
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.85 E-value=1.9e+02 Score=25.35 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001664 381 MQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRA 436 (1035)
Q Consensus 381 i~~Lr~eI~~Lq~eL~~~~~~~~~~e~q~L~eri~~Le~e~~~L~~eL~e~r~r~~ 436 (1035)
|.-|+-+|..|++..... ..+++.+......|+.+|+.|..+-..+++++.
T Consensus 20 I~LLQmEieELKEknn~l-----~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 20 ITLLQMEIEELKEKNNSL-----SQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHhhHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555444333 455666666667777777777777777776654
No 482
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=41.82 E-value=15 Score=42.66 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.2
Q ss_pred hHHHhhcCCCccEEeeccCCCCccccc
Q 001664 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 72 lV~~~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+..+.+|.+..||..++||||||...
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 345677888888888999999999874
No 483
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=41.74 E-value=20 Score=44.97 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.7
Q ss_pred CccEEeeccCCCCccccc
Q 001664 81 NATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 81 n~tI~aYGqTGSGKTyTm 98 (1035)
+.-++++|+||||||..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSV 241 (641)
T ss_pred CceEEEEeCCCCCccceE
Confidence 456899999999999986
No 484
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=41.62 E-value=12 Score=42.61 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.5
Q ss_pred hhcCCCccEEeeccCCCCccccc
Q 001664 76 LFQGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 76 ~l~G~n~tI~aYGqTGSGKTyTm 98 (1035)
-..+-+.-++-||..|||||.||
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHH
Confidence 34566777999999999999999
No 485
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=41.61 E-value=1.3e+02 Score=29.12 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 844 AKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQ 897 (1035)
Q Consensus 844 Ak~~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~ 897 (1035)
|...++||+..-...-..+..++.++..+...+..+...+.+...+...|..|.
T Consensus 64 aQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778877776666667777777777777777777777777777777766554
No 486
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=41.57 E-value=11 Score=43.03 Aligned_cols=17 Identities=47% Similarity=0.643 Sum_probs=15.0
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
..++-||++|+|||+..
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 46788999999999987
No 487
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=41.51 E-value=6e+02 Score=29.14 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 666 KLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (1035)
Q Consensus 666 ~L~~~~~~q~~vL~rK~eE~~a~~krLke~le~ 698 (1035)
++-.........|+-+.+......+-||+..+.
T Consensus 245 k~i~EfdiEre~LRAel~ree~r~K~lKeEmeS 277 (561)
T KOG1103|consen 245 KLIEEFDIEREFLRAELEREEKRQKMLKEEMES 277 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444443
No 488
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=41.34 E-value=23 Score=44.19 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=15.0
Q ss_pred ccEEeeccCCCCccccc
Q 001664 82 ATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (1035)
..++.+|+||||||.++
T Consensus 159 ~hvLviapTgSGKg~g~ 175 (606)
T PRK13897 159 QHALLFAPTGSGKGVGF 175 (606)
T ss_pred ceEEEEcCCCCCcceEE
Confidence 45889999999999887
No 489
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=41.25 E-value=4.2e+02 Score=28.01 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-----H
Q 001664 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEA-----A 611 (1035)
Q Consensus 537 l~eLEeei~~LqkErd~Ll~~l~~~~~~~~~~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~-----~ 611 (1035)
+..+.+++..+-.--..|.+..-.....+.-.....+..+..++.+|+.++..|+.+......-...-.+...+ .
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001664 612 KRLQAEIQSIKAQKVQLQNKIK 633 (1035)
Q Consensus 612 ~~L~~ei~~mK~~kv~L~kkmk 633 (1035)
+..++||..+|++-.+|-.+++
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 490
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.12 E-value=1.9e+02 Score=34.90 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001664 847 LLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIAL 908 (1035)
Q Consensus 847 ~l~~l~~~~~~~r~~~~~~e~~l~El~~k~~el~~~l~~~~~~~~~l~~~~~~~e~~~~~~~ 908 (1035)
++...|...++. ..+.+.+....|++.+++.+..++..+..+.++++..++.+|+.+..|-
T Consensus 57 vV~~~FddkVnq-SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 57 VVDTTFDDKVRQ-HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred eecchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344445444332 2333334444455555555444444344444444444444444444443
No 491
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=41.06 E-value=3.6e+02 Score=29.18 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001664 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEG 657 (1035)
Q Consensus 578 ~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~~kv~L~kkmkee~~~~r~~~~~~~kEi~qLk~~~ 657 (1035)
.++--+=.++..++.-.+-+.+...++.+.+..-+ |+++...++.-... +++|++.-...=...++....|+++.
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~-~~~~~~~~~~~~~k----L~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSK-LEEENDKLKADLEK----LETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccc-hhhhHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 001664 658 RKNEFERHKLEALNQRQKMVLQRK 681 (1035)
Q Consensus 658 rK~e~ei~~L~~~~~~q~~vL~rK 681 (1035)
.....|..+|..++++.++.+..+
T Consensus 189 e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 189 EGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHcccHHHHHHHHHHHHHHHHhcc
No 492
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=41.03 E-value=3.3e+02 Score=33.21 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=33.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001664 568 HTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA 623 (1035)
Q Consensus 568 ~~~KLke~~e~kL~eLE~el~~Lkkk~~~~~~l~k~k~k~e~~~~~L~~ei~~mK~ 623 (1035)
.++-+|.+.-.+..+|-.+-.-|+-+.... .-.|.|++.+++.|.+||...|+
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~---kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAV---KQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777666666544432 22566788888888877744443
No 493
>PRK08118 topology modulation protein; Reviewed
Probab=40.99 E-value=12 Score=38.57 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.2
Q ss_pred EEeeccCCCCcccc
Q 001664 84 VLAYGQTGSGKTYT 97 (1035)
Q Consensus 84 I~aYGqTGSGKTyT 97 (1035)
|+..|++|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999954
No 494
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=40.79 E-value=7.8 Score=43.56 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.7
Q ss_pred cCCCccEEeeccCCCCccccc
Q 001664 78 QGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 78 ~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 388899999999999999765
No 495
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=40.76 E-value=12 Score=37.11 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=14.1
Q ss_pred cEEeeccCCCCccccc
Q 001664 83 TVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (1035)
+|+.+|.+|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 5889999999999875
No 496
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=40.64 E-value=8.9e+02 Score=30.91 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=27.8
Q ss_pred CCCChhhhhhhccCCCCceeEEEeecCCC-CCCHHHHHHHHHHH
Q 001664 318 YRDSKLTRLLQDSLGGNSKTVMIACISPA-DINAEESLNTLKYA 360 (1035)
Q Consensus 318 yRdSkLTrLLqdsLgGns~t~mI~~vSP~-~~~~~ETl~TL~fa 360 (1035)
.|-+--+|++|..-||---|++-+.+-|. .++..+.|+--=|.
T Consensus 387 lr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYS 430 (1259)
T KOG0163|consen 387 LRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYS 430 (1259)
T ss_pred HHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHH
Confidence 34455578888888888788888877664 33444555544443
No 497
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=40.58 E-value=17 Score=39.12 Aligned_cols=28 Identities=43% Similarity=0.576 Sum_probs=21.1
Q ss_pred hhHHHhhc-C--CCccEEeeccCCCCccccc
Q 001664 71 PLVDGLFQ-G--YNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 71 plV~~~l~-G--~n~tI~aYGqTGSGKTyTm 98 (1035)
|-+|.++. | .+++++.+|++|||||.-.
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 34567774 4 4788999999999998653
No 498
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.49 E-value=12 Score=42.98 Aligned_cols=12 Identities=67% Similarity=1.135 Sum_probs=0.0
Q ss_pred EEeeccCCCCcc
Q 001664 84 VLAYGQTGSGKT 95 (1035)
Q Consensus 84 I~aYGqTGSGKT 95 (1035)
|+-||+.|+|||
T Consensus 188 VLLYGPPGTGKT 199 (406)
T COG1222 188 VLLYGPPGTGKT 199 (406)
T ss_pred eEeeCCCCCcHH
No 499
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=40.31 E-value=13 Score=41.97 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=0.0
Q ss_pred cCCCccEEeeccCCCCccccc
Q 001664 78 QGYNATVLAYGQTGSGKTYTM 98 (1035)
Q Consensus 78 ~G~n~tI~aYGqTGSGKTyTm 98 (1035)
.+....++-||++|+|||+..
T Consensus 27 ~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 27 QEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CCCCCeEEEECCCCCCHHHHH
No 500
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=40.27 E-value=11 Score=38.30 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=0.0
Q ss_pred EEeeccCCCCcccc
Q 001664 84 VLAYGQTGSGKTYT 97 (1035)
Q Consensus 84 I~aYGqTGSGKTyT 97 (1035)
|+-.|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Done!