BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001666
(1035 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 283 bits (725), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 150/345 (43%), Positives = 217/345 (62%), Gaps = 17/345 (4%)
Query: 394 RKLYNQVQDLKGNIRVYCRVRPFLDGQSS-----FMSTVEHIEKGDIVITTPSKYGKEGR 448
++ YN ++D+KG IRVYCR+RP + +SS ++TV+ T + + R
Sbjct: 2 KRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEF-------TVEHPWKDDKR 54
Query: 449 KSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEE 508
K +++VF A+Q ++F DT+ L++S +DGYNVCIFAYGQTGSGKTFT+ G E
Sbjct: 55 KQHIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGH----ES 110
Query: 509 SLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-KLEIRNSSQ 567
+ G+ RA +LF I + + + M+E+Y + + DLL+ + KLEI+ S+
Sbjct: 111 NPGLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSK 170
Query: 568 NRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASG 627
+ V + +P+S+ ++ ++ G + R V T MN+ SSRSH L+V ++ DL +
Sbjct: 171 GMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQ 230
Query: 628 TILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNS 687
+ RG + VDLAGSERV KS G++LKEAQ INKSLSALGDVI +L+ N H+PYRN
Sbjct: 231 SAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNH 290
Query: 688 KLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
KLT L+ DSLGG AKTLMFV++SP L ET ++L +A RV T+
Sbjct: 291 KLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 335
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 280 bits (717), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 208/335 (62%), Gaps = 11/335 (3%)
Query: 404 KGNIRVYCRVRPFL--DGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNA 461
KGNIRV RVRP DG+ + + D I GK SF +KVF P A
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKP--VSFELDKVFSPQA 60
Query: 462 TQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLF 521
+Q +VF + ++L+ S +DG+NVCIFAYGQTG+GKT+TM G T E+ G+N RAL LF
Sbjct: 61 SQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG----TAENPGINQRALQLLF 116
Query: 522 LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIR--NSSQNRINVPDANLVP 579
++ Y I V EIYNE +RDLL + +KLEIR ++ VP
Sbjct: 117 SEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQ 175
Query: 580 VSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVDL 639
V S +D+ ++ G NR T +N+ SSRSH+ L V V+G D ++G G ++LVDL
Sbjct: 176 VQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDL 235
Query: 640 AGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLGG 699
AGSERV KS G RL+EAQHINKSLSALGDVIA+L + HVP+RNSKLT LLQDSL G
Sbjct: 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSG 295
Query: 700 QAKTLMFVHISPELEALGETISTLKFAERVATVEL 734
+KTLM V +SP + ET+ +LKFAERV +VEL
Sbjct: 296 DSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 278 bits (711), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 160/384 (41%), Positives = 234/384 (60%), Gaps = 30/384 (7%)
Query: 401 QDLKGNIRVYCRVRPFLDGQ----------SSFMSTVEHIEKGDIVITTPSKYGKEGRKS 450
+D+KG IRVYCR+RP + + S TVEH+ K D K
Sbjct: 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDD------------KAKQ 48
Query: 451 FSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESL 510
+++VF NATQ +VF DT+ L++S +DGYNVCIFAYGQTGSGKTFT+ G + +
Sbjct: 49 HMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGA----DSNP 104
Query: 511 GVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-KLEIRNSSQNR 569
G+ RA+++LF I + + + + M+E+Y + + DLL+ + KL+I+ S+
Sbjct: 105 GLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM 164
Query: 570 INVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTI 629
++V + +V +S+ ++ ++ G + R T MN++SSRSH ++V ++ +L + I
Sbjct: 165 VSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAI 224
Query: 630 LRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKL 689
RG + VDLAGSERV KS G++LKEAQ INKSLSALGDVI++L+ N H+PYRN KL
Sbjct: 225 ARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKL 284
Query: 690 TQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVELGAARVNKDSSDVKEL 749
T L+ DSLGG AKTLMFV+ISP L ET ++L +A RV ++ ++ N S +V L
Sbjct: 285 TMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSK-NVSSKEVARL 343
Query: 750 KEQIVSLKAALARK--DGDLEHLQ 771
K+ + K RK D +LE +Q
Sbjct: 344 KKLVSYWKEQAGRKGDDEELEEIQ 367
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 261 bits (666), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/354 (43%), Positives = 202/354 (57%), Gaps = 27/354 (7%)
Query: 403 LKGNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTP-----------------SKYGK 445
LKGNIRV+CRVRP L G+ + + G + P
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAP 79
Query: 446 EGRKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKEL 505
R FSF++VF P + Q EVF + L++S LDGY VCIFAYGQTGSGKTFTM G
Sbjct: 80 PPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 506 TEESLGVNYRALNDLFLISNQ-RRDTIHYDIFVQMLEIYNEQVRDLLVTD---GLNKKLE 561
+ G+ RAL LF ++ + Y +EIYNE VRDLL T G + E
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECE 199
Query: 562 IRNSSQN--RINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHV 619
IR + + V +A VPVS +V +++L ++NRAV TA N+RSSRSHS + +
Sbjct: 200 IRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQI 259
Query: 620 QGRDLASGTILRGSMHLVDLAGSERVDKSEVTG----DRLKEAQHINKSLSALGDVIASL 675
G + G + LVDLAGSER+D G +RL+E Q IN SLS LG VI +L
Sbjct: 260 SGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL 319
Query: 676 AQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERV 729
+ K +HVPYRNSKLT LLQ+SLGG AK LMFV+ISP E + E++++L+FA +V
Sbjct: 320 SNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 259 bits (662), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 152/357 (42%), Positives = 219/357 (61%), Gaps = 18/357 (5%)
Query: 392 ENRKLYNQVQDLKGNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIV----ITTPSKYGKEG 447
E ++L+N V DL+GNIRV+CR+RP L+ + + M V I +K K G
Sbjct: 54 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAK-SKMG 112
Query: 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTE 507
++ FSF++VF P ++Q+++F LI+S LDGYN+CIFAYGQTGSGKT+TM G
Sbjct: 113 QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDG----VP 168
Query: 508 ESLGVNYRALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSS 566
ES+GV R ++ LF I R Y+I LEIYNE + DLL + K +EIR +
Sbjct: 169 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAK 226
Query: 567 QNRINVPDANLV--PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDL 624
N+ ++ +N+ V N + +M+ + NRA +TA N+RSSRSH+ + + GR
Sbjct: 227 NNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA 286
Query: 625 ASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPY 684
I GS++LVDLAGSE S T R+ E ++IN+SLS L +VI +L QK H+PY
Sbjct: 287 EKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPY 342
Query: 685 RNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVELGAARVNK 741
RNSKLT LL SLGG +KTLMF+++SP + E++ +L+FA V + ++ A+ N+
Sbjct: 343 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 399
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 259 bits (661), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 152/357 (42%), Positives = 219/357 (61%), Gaps = 18/357 (5%)
Query: 392 ENRKLYNQVQDLKGNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIV----ITTPSKYGKEG 447
E ++L+N V DL+GNIRV+CR+RP L+ + + M V I +K K G
Sbjct: 40 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAK-SKMG 98
Query: 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTE 507
++ FSF++VF P ++Q+++F LI+S LDGYN+CIFAYGQTGSGKT+TM G
Sbjct: 99 QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDG----VP 154
Query: 508 ESLGVNYRALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSS 566
ES+GV R ++ LF I R Y+I LEIYNE + DLL + K +EIR +
Sbjct: 155 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAK 212
Query: 567 QNRINVPDANLV--PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDL 624
N+ ++ +N+ V N + +M+ + NRA +TA N+RSSRSH+ + + GR
Sbjct: 213 NNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA 272
Query: 625 ASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPY 684
I GS++LVDLAGSE S T R+ E ++IN+SLS L +VI +L QK H+PY
Sbjct: 273 EKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPY 328
Query: 685 RNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVELGAARVNK 741
RNSKLT LL SLGG +KTLMF+++SP + E++ +L+FA V + ++ A+ N+
Sbjct: 329 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 385
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 256 bits (654), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 218/357 (61%), Gaps = 18/357 (5%)
Query: 392 ENRKLYNQVQDLKGNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIV----ITTPSKYGKEG 447
E ++L+N V DL+GNIRV+CR+RP L+ + + M V I +K K G
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAK-SKMG 101
Query: 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTE 507
++ FSF++VF P ++Q+++F LI+S LDGYN+CIFAYGQTGSGKT+TM G
Sbjct: 102 QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDG----VP 157
Query: 508 ESLGVNYRALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSS 566
ES+GV R ++ LF I R Y+I LEIYNE + DLL + K +EIR +
Sbjct: 158 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAK 215
Query: 567 QNRINVPDANLV--PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDL 624
N+ ++ +N+ V N + +M+ + NRA +TA N+RSSRSH+ + + GR
Sbjct: 216 NNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA 275
Query: 625 ASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPY 684
I GS++LVDLAGSE S T R+ E ++I +SLS L +VI +L QK H+PY
Sbjct: 276 EKQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPY 331
Query: 685 RNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVELGAARVNK 741
RNSKLT LL SLGG +KTLMF+++SP + E++ +L+FA V + ++ A+ N+
Sbjct: 332 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 388
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 256 bits (653), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 218/357 (61%), Gaps = 18/357 (5%)
Query: 392 ENRKLYNQVQDLKGNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIV----ITTPSKYGKEG 447
E ++L+N V DL+ NIRV+CR+RP L+ + + M V I +K K G
Sbjct: 46 ERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAK-SKMG 104
Query: 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTE 507
++ FSF++VF P ++Q+++F LI+S LDGYN+CIFAYGQTGSGKT+TM G
Sbjct: 105 QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDG----VP 160
Query: 508 ESLGVNYRALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSS 566
ES+GV R ++ LF I R Y+I LEIYNE + DLL + K +EIR +
Sbjct: 161 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAK 218
Query: 567 QNRINVPDANLV--PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDL 624
N+ ++ +N+ V N + +M+ + NRA +TA N+RSSRSH+ + + GR
Sbjct: 219 NNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA 278
Query: 625 ASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPY 684
I GS++LVDLAGSE S T R+ E ++IN+SLS L +VI +L QK H+PY
Sbjct: 279 EKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPY 334
Query: 685 RNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVELGAARVNK 741
RNSKLT LL SLGG +KTLMF+++SP + E++ +L+FA V + ++ A+ N+
Sbjct: 335 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 255 bits (651), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 216/358 (60%), Gaps = 23/358 (6%)
Query: 394 RKLYNQVQDLKGNIRVYCRVRPFL----DGQSSFMSTVEHIEKGDIVITTPSKYGKEGR- 448
R L+N++Q+L+GNIRVYCR+RP L + +S ++ E + + +K +
Sbjct: 3 RTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV 62
Query: 449 KSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEE 508
F F+K+F T +VF + L++S LDGYNVCIFAYGQTGSGKTFTM P +
Sbjct: 63 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD---- 118
Query: 509 SLGVNYRALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-------KL 560
G+ ++ +F I+ + Y + + +EIYNE + DLL +D NK K
Sbjct: 119 --GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKH 176
Query: 561 EIRNSSQNRINVPDANLVPVSSTNDVIEM-MNLGQKNRAVGATAMNDRSSRSHSCLTVHV 619
EIR+ + + + +++E+ + K R+ +TA N+ SSRSHS +H+
Sbjct: 177 EIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 236
Query: 620 QGRDLASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN 679
G + +G G+++LVDLAGSER++ S+V GDRL+E Q+INKSLS LGDVI +L Q +
Sbjct: 237 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 296
Query: 680 A---HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVEL 734
+ H+P+RNSKLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 297 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 215/350 (61%), Gaps = 18/350 (5%)
Query: 392 ENRKLYNQVQDLKGNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIV----ITTPSKYGKEG 447
E ++L+N V DL+GNIRV+CR+RP L+ + + M V I +K K G
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAK-SKMG 101
Query: 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTE 507
++ FSF++VF P ++Q+++F LI+S LDGYN+CIFAYGQ+GSGKT+TM G
Sbjct: 102 QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDG----VP 157
Query: 508 ESLGVNYRALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSS 566
ES+GV R ++ LF I R Y+I LEIYNE + DLL + K +EIR +
Sbjct: 158 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAK 215
Query: 567 QNRINVPDANLV--PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDL 624
N+ ++ +N+ V N + +M+ + NRA +TA N+RSSRSH+ + + GR
Sbjct: 216 NNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA 275
Query: 625 ASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPY 684
I GS++LVDLAGSE S T R+ E ++IN+SLS L +VI +L QK H+PY
Sbjct: 276 EKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPY 331
Query: 685 RNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVEL 734
RNSKLT LL SLGG +KTLMF+++SP + E++ +L+FA V + ++
Sbjct: 332 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 381
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/352 (42%), Positives = 220/352 (62%), Gaps = 26/352 (7%)
Query: 403 LKGNIRVYCRVRPFLDGQSSFMSTVEHIEK-----GDIVITTPSKYGKEGRKSFSFNKVF 457
L+GNIRVYCRVRP L + MS + IEK G +T G+ +F F+ +F
Sbjct: 3 LRGNIRVYCRVRPPLLNEPQDMSHIL-IEKFNEAKGAQSLTINRNEGRILSYNFQFDMIF 61
Query: 458 GPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRAL 517
P+ T E+F + R L++S LDGYNVCIFAYGQTGSGKT+TM + G+ L
Sbjct: 62 EPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD------GMIPMTL 115
Query: 518 NDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLL--------VTDGLN-KKLEIRNSSQ 567
+ +F +N + +Y++ + +EIYNE + DLL + + L+ +K +IR+ +
Sbjct: 116 SHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHE 175
Query: 568 NR-INVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLAS 626
+ + + + ++ST+ V ++ K R+ AT N+RSSRSHS VH+ GR+L +
Sbjct: 176 KQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT 235
Query: 627 GTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA---HVP 683
G +G ++LVDLAGSER++ S VTG+RL+E Q+INKSLS LGDVI +L +A ++P
Sbjct: 236 GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIP 295
Query: 684 YRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVELG 735
+RNSKLT LLQ SL G +KTLMFV+I P+ + ET+++L+FA +V + ++
Sbjct: 296 FRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 215/358 (60%), Gaps = 23/358 (6%)
Query: 394 RKLYNQVQDLKGNIRVYCRVRPFL----DGQSSFMSTVEHIEKGDIVITTPSKYGKEGR- 448
R L+N++Q+L+GNIRVY R+RP L + +S ++ E + + +K +
Sbjct: 48 RTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV 107
Query: 449 KSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEE 508
F F+K+F T +VF + L++S LDGYNV IFAYGQTGSGKTFTM P +
Sbjct: 108 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD---- 163
Query: 509 SLGVNYRALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-------KL 560
G+ ++ +F I+ + Y + + +EIYNE + DLL +D NK K
Sbjct: 164 --GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKH 221
Query: 561 EIRNSSQNRINVPDANLVPVSSTNDVIEM-MNLGQKNRAVGATAMNDRSSRSHSCLTVHV 619
EIR+ + + + +++E+ + K R+ +TA N+ SSRSHS +H+
Sbjct: 222 EIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 281
Query: 620 QGRDLASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN 679
G + +G G+++LVDLAGSER++ S+V GDRL+E Q+INKSLSALGDVI +L Q +
Sbjct: 282 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPD 341
Query: 680 A---HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVEL 734
+ H+P+RNSKLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 342 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 247 bits (631), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 212/362 (58%), Gaps = 32/362 (8%)
Query: 394 RKLYNQVQDLKGNIRVYCRVRPFLDGQSSFMSTVEHI-------EKGDIVITTPSKYGKE 446
R L+N++Q+L+GNIRVYCR+RP L + +EHI + GD +T G
Sbjct: 17 RALHNELQELRGNIRVYCRIRPPLPHEDD---NIEHIKVQPFDDDNGDQGMTI--NRGNS 71
Query: 447 GRKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELT 506
F F+K+F T E+F + LI+S LDGYNVCIFAYGQTGSGKT+TM P +
Sbjct: 72 QVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD-- 129
Query: 507 EESLGVNYRALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDG---------L 556
G+ +N +F I Y + + +EIYNE + DLL +
Sbjct: 130 ----GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNA 185
Query: 557 NKKLEIRNSSQNRIN-VPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCL 615
+ K EIR+ + + + + + S + V +++ K R+ +TA N+ SSRSHS
Sbjct: 186 DSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIF 245
Query: 616 TVHVQGRDLASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASL 675
+H++G++ +G +G ++LVDLAGSER++ S V G+RL+E Q INKSLS LGDVI +L
Sbjct: 246 IIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHAL 305
Query: 676 AQKNA---HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
+ H+P+RNSKLT LLQ SL G +KTLMFV+ISP L ETI++L+FA +V
Sbjct: 306 NSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNT 365
Query: 733 EL 734
++
Sbjct: 366 KM 367
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 243 bits (619), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 206/347 (59%), Gaps = 23/347 (6%)
Query: 405 GNIRVYCRVRPFL----DGQSSFMSTVEHIEKGDIVITTPSKYGKEGR-KSFSFNKVFGP 459
GNIRVYCR+RP L + +S ++ E + + +K + F F+K+F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 460 NATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALND 519
T +VF + L++S LDGYNVCIFAYGQTGSGKTFTM P + G+ ++
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTISH 115
Query: 520 LF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-------KLEIRNSSQNRIN 571
+F I+ + Y + + +EIYNE + DLL +D NK K EIR+ + +
Sbjct: 116 IFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTT 175
Query: 572 VPDANLVPVSSTNDVIEM-MNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTIL 630
+ +++E+ + K R+ +TA N+ SSRSHS +H+ G + +G
Sbjct: 176 TITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHS 235
Query: 631 RGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA---HVPYRNS 687
G+++LVDLAGSER++ S+V GDRL+E Q+INKSLS LGDVI +L Q ++ H+P+RNS
Sbjct: 236 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNS 295
Query: 688 KLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVEL 734
KLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 296 KLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 207/349 (59%), Gaps = 23/349 (6%)
Query: 403 LKGNIRVYCRVRPFL----DGQSSFMSTVEHIEKGDIVITTPSKYGKEGR-KSFSFNKVF 457
++GNIRVYCR+RP L + +S ++ E + + +K + F F+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 458 GPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRAL 517
T +VF + L++S LDGYNVCIFAYGQTGSGKTFTM P + G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 518 NDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-------KLEIRNSSQNR 569
+ +F I+ + Y + + +EIYNE + DLL +D NK K EIR+ + +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 570 INVPDANLVPVSSTNDVIEM-MNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGT 628
+ +++E+ + K R+ +TA N+ SSRSHS +H+ G + +G
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 234
Query: 629 ILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA---HVPYR 685
G+++LVDLAGS R++ S+V GDRL+E Q+INKSLS LGDVI +L Q ++ H+P+R
Sbjct: 235 HSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVEL 734
NSKLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 207/349 (59%), Gaps = 23/349 (6%)
Query: 403 LKGNIRVYCRVRPFL----DGQSSFMSTVEHIEKGDIVITTPSKYGKEGR-KSFSFNKVF 457
++GNIRVYCR+RP L + +S ++ E + + +K + F F+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 458 GPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRAL 517
T +VF + L++S LDGYNVCIFAYGQTGSGKTFTM P + G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 518 NDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-------KLEIRNSSQNR 569
+ +F I+ + Y + + +EIYNE + DLL +D NK K EIR+ + +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 570 INVPDANLVPVSSTNDVIEM-MNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGT 628
+ +++E+ + K R+ +TA N+ SSRSHS +H+ G + +G
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 234
Query: 629 ILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA---HVPYR 685
G+++LVDLAGSER++ S+V GDRL+E Q+I KSLS LGDVI +L Q ++ H+P+R
Sbjct: 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVEL 734
NSKLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 207/349 (59%), Gaps = 23/349 (6%)
Query: 403 LKGNIRVYCRVRPFL----DGQSSFMSTVEHIEKGDIVITTPSKYGKEGR-KSFSFNKVF 457
++GNIRVYCR+RP L + +S ++ E + + +K + F F+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 458 GPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRAL 517
T +VF + L++S LDGYNVCIFAYGQTGSGKTFTM P + G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 518 NDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-------KLEIRNSSQNR 569
+ +F I+ + Y + + +EIYNE + DLL +D NK K EIR+ + +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 570 INVPDANLVPVSSTNDVIEM-MNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGT 628
+ +++E+ + K R+ +TA N+ SS SHS +H+ G + +G
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGA 234
Query: 629 ILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA---HVPYR 685
G+++LVDLAGSER++ S+V GDRL+E Q+INKSLS LGDVI +L Q ++ H+P+R
Sbjct: 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVEL 734
NSKLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 212/349 (60%), Gaps = 16/349 (4%)
Query: 407 IRVYCRVRPFLDGQ---SSFMSTVE-HIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNAT 462
+RV R RP ++G+ +S+ V+ ++ G + + P E K+F+F+ V+ NA
Sbjct: 23 VRVVVRCRP-MNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAK 81
Query: 463 QAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLF 521
Q E++ +T R L+ SVL G+N IFAYGQTG+GKT+TM G + E GV + + +F
Sbjct: 82 QFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG-DPEKRGVIPNSFDHIF 140
Query: 522 L-ISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRINVPDANLVPV 580
IS R Y + LEIY E++RDLL D K+LE++ + V D +
Sbjct: 141 THIS--RSQNQQYLVRASYLEIYQEEIRDLLSKDQ-TKRLELKERPDTGVYVKDLSSFVT 197
Query: 581 SSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA---SGTILRGSMHLV 637
S ++ +MN+G +NR+VGAT MN+ SSRSH+ + ++ ++ I G ++LV
Sbjct: 198 KSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLV 257
Query: 638 DLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQ-KNAHVPYRNSKLTQLLQDS 696
DLAGSER K+ G+RLKEA IN SLSALG+VI++L K+ H+PYR+SKLT+LLQDS
Sbjct: 258 DLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 317
Query: 697 LGGQAKTLMFVHISPELEALGETISTLKFAERVATVELGAARVNKDSSD 745
LGG AKT+M ++ P + ET++TL++A R ++ RVN+D D
Sbjct: 318 LGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK-NKPRVNEDPKD 365
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 207/380 (54%), Gaps = 27/380 (7%)
Query: 378 GLAHAASSYQKVLEENRKLYNQVQDLKGNIRVYCRVRPFLDGQSSFM-----STVEHIEK 432
+ +AAS Q V LKGNIRV+CR+R SS +++
Sbjct: 347 AVINAASGRQTVDAALAAAQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAP 406
Query: 433 GDI-------VITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCI 485
DI ++ T + F F+K+F + VF + LI+ LDG NVC+
Sbjct: 407 QDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCV 466
Query: 486 FAYGQTGSGKTFTMTGPKE-LTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYN 544
FAYGQTGSGKTFTM+ P + SL + ND I + Y + + +EIYN
Sbjct: 467 FAYGQTGSGKTFTMSHPTNGMIPLSLK---KIFND---IEELKEKGWSYTVRGKFIEIYN 520
Query: 545 EQVRDLLVTD-GLNKKLEIRNSS-QNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGAT 602
E + DLL N K EI++ + V + + + + S I ++N K R+ AT
Sbjct: 521 EAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAAT 580
Query: 603 AMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHIN 662
ND SSRSHS + +QG + + G+++L+DLAGSER++ S GDRLKE Q IN
Sbjct: 581 KSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAIN 640
Query: 663 KSLSALGDVIASLAQKN-AHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETIS 721
KSLS LGDVI SL K+ +HVPYRNSKLT LL+ SLGG +KTLMFV+ISP + L ETI+
Sbjct: 641 KSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETIN 700
Query: 722 TLKFAERVATVELGAARVNK 741
+L+FA +V R+NK
Sbjct: 701 SLRFATKVNNT-----RINK 715
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 216 bits (550), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 199/337 (59%), Gaps = 25/337 (7%)
Query: 407 IRVYCRVRPFLDGQ----SSFMSTV-EHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNA 461
I+V CR RP D + S F+ ++E+ I I K + F+KVF PNA
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG---------KVYLFDKVFKPNA 63
Query: 462 TQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESL--GVNYRALN 518
+Q +V+++ +S++ VL GYN IFAYGQT SGKT TM G + +S+ G+ R +N
Sbjct: 64 SQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEG---VIGDSVKQGIIPRIVN 120
Query: 519 DLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRI-NVPDANL 577
D+F + + I V EIY +++RDLL +N + + +NR+ V A
Sbjct: 121 DIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSV---HEDKNRVPYVKGATE 177
Query: 578 VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLV 637
VSS DV E++ G+ NR + T MN+ SSRSHS ++V+ +L + L G ++LV
Sbjct: 178 RFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLV 237
Query: 638 DLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN-AHVPYRNSKLTQLLQDS 696
DLAGSE+V K+ G L EA++INKSLSALG+VI++LA N H+PYR+SKLT++LQ+S
Sbjct: 238 DLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQES 297
Query: 697 LGGQAKTLMFVHISPELEALGETISTLKFAERVATVE 733
LGG A+T + + SP ET STL F R TV+
Sbjct: 298 LGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 203/359 (56%), Gaps = 19/359 (5%)
Query: 406 NIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVIT-----TPSKYGKEGRKSFSFNKVFGPN 460
+I+V R RP + VE G ++T T + KE + SF+F++VF +
Sbjct: 7 SIKVVARFRP--------QNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMS 58
Query: 461 ATQAEVFS-DTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALND 519
Q+++F + + +L+GYN +FAYGQTG+GK++TM G + GV R +
Sbjct: 59 CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQ 118
Query: 520 LFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRINVPDANLVP 579
+F I Y + V +EIY E++RDLL N L + + V +
Sbjct: 119 IFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ--NDNLPVHEEKNRGVYVKGLLEIY 176
Query: 580 VSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVDL 639
VSS +V E+M G RAV AT MN SSRSHS + + +++ +G+ G + LVDL
Sbjct: 177 VSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDL 236
Query: 640 AGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQ-KNAHVPYRNSKLTQLLQDSLG 698
AGSE+V K+ +G L+EA+ INKSLSALG VI +L K++HVPYR+SKLT++LQ+SLG
Sbjct: 237 AGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLG 296
Query: 699 GQAKTLMFVHISPELEALGETISTLKFAERVATVELGAARVNKDSSDVKELKEQIVSLK 757
G ++T + ++ SP ET+STL+F R +++ A+VN + S ELK+ + K
Sbjct: 297 GNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK-NKAKVNAELSPA-ELKQMLAKAK 353
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 198/335 (59%), Gaps = 23/335 (6%)
Query: 406 NIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKE-----GRKSFSFNKVFGPN 460
NI+V CR RP + + + +GD I +K+ E K ++F++VF +
Sbjct: 8 NIKVMCRFRPLNESE---------VNRGDKYI---AKFQGEDTVVIASKPYAFDRVFQSS 55
Query: 461 ATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALND 519
+Q +V++D + +++ VL+GYN IFAYGQT SGKT TM G K E +G+ R + D
Sbjct: 56 TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHDPEGMGIIPRIVQD 114
Query: 520 LFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRI-NVPDANLV 578
+F + + + I V EIY +++RDLL N + + +NR+ V
Sbjct: 115 IFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSV---HEDKNRVPYVKGCTER 171
Query: 579 PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVD 638
V S ++V++ ++ G+ NR V T MN+ SSRSHS ++V+ + + L G ++LVD
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVD 231
Query: 639 LAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLG 698
LAGSE+V K+ G L EA++INKSLSALG+VI++LA+ + +VPYR+SK+T++LQDSLG
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLG 291
Query: 699 GQAKTLMFVHISPELEALGETISTLKFAERVATVE 733
G +T + + SP ET STL F +R T++
Sbjct: 292 GNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 211 bits (537), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 197/334 (58%), Gaps = 23/334 (6%)
Query: 406 NIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKE-----GRKSFSFNKVFGPN 460
NI+V CR RP + + + +GD I +K+ E K ++F++VF +
Sbjct: 8 NIKVMCRFRPLNESE---------VNRGDKYI---AKFQGEDTVVIASKPYAFDRVFQSS 55
Query: 461 ATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALND 519
+Q +V++D + +++ VL+GYN IFAYGQT SGKT TM G K E +G+ R + D
Sbjct: 56 TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHDPEGMGIIPRIVQD 114
Query: 520 LFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRI-NVPDANLV 578
+F + + + I V EIY +++RDLL N + + +NR+ V
Sbjct: 115 IFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSV---HEDKNRVPYVKGCTER 171
Query: 579 PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVD 638
V S ++V++ ++ G+ NR V T MN+ SSRSHS ++V+ + + L G ++LVD
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVD 231
Query: 639 LAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLG 698
LAGSE+V K+ G L EA++INKSLSALG+VI++LA+ + +VPYR+SK+T++LQDSLG
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLG 291
Query: 699 GQAKTLMFVHISPELEALGETISTLKFAERVATV 732
G +T + + SP ET STL F +R T+
Sbjct: 292 GNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 209 bits (532), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 205/346 (59%), Gaps = 25/346 (7%)
Query: 406 NIRVYCRVRPFLDGQSSFMSTVEHIEKGDIV----ITTPSKYGKEGRKSFSFNKVFGPNA 461
NI+VY RVRP L+ + + + E + D+V + T + K F+F++ FGP +
Sbjct: 24 NIQVYVRVRP-LNSRERCIRSAEVV---DVVGPREVVTRHTLDSKLTKKFTFDRSFGPES 79
Query: 462 TQAEVFSDTRS-LIRSVLDGYNVCIFAYGQTGSGKTFTMTGPK--ELT-----EESLGVN 513
Q +V+S S LI VL+GYN +FAYGQTG+GKT TM G + EL + +G+
Sbjct: 80 KQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGII 139
Query: 514 YRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRINVP 573
RAL+ LF R + Y + + LE+YNE++ DLL TD K+ I + S + +V
Sbjct: 140 PRALSHLF--DELRMMEVEYTMRISYLELYNEELCDLLSTDD-TTKIRIFDDSTKKGSVI 196
Query: 574 DANL--VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC--LTVHVQGRDLASGTI 629
L +PV S +DV +++ G++ R T MN +SSRSH+ + VH++ + +
Sbjct: 197 IQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDM 256
Query: 630 LR-GSMHLVDLAGSERVDKS-EVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNS 687
L+ G ++LVDLAGSE V K+ G R++E +IN+SL LG VI +L + HVPYR S
Sbjct: 257 LKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRES 316
Query: 688 KLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVE 733
KLT+LLQ+SLGG+ KT + ISP + + ET+STL++A R ++
Sbjct: 317 KLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 209 bits (532), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 198/353 (56%), Gaps = 19/353 (5%)
Query: 406 NIRVYCRVRPF--LDGQSSFMSTVEHIEKGDIVITTP------SKYGKEGRKSFSFNKVF 457
NI+V R RP + + + ++ + E VI P + K+ ++F+F+ V+
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 458 GPNATQAEVF-SDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRA 516
+ +F + + LI +VL+G+N IFAYGQTG+GKT+TM G KE G +
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKE----EPGAIPNS 120
Query: 517 LNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRINVPDAN 576
LF N ++ + LE+YNE++RDL+ N KL ++ I V +
Sbjct: 121 FKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN---NTKLPLKEDKTRGIYVDGLS 177
Query: 577 LVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASG--TILRGSM 634
+ V++ ++ +M+ G NR V AT MND SSRSHS V ++ ++ I G +
Sbjct: 178 MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKL 237
Query: 635 HLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQ 694
+LVDLAGSER K+ TG+ L E IN SLSALG VI+ L + H+PYR+SKLT+LLQ
Sbjct: 238 NLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQ 297
Query: 695 DSLGGQAKTLMFVHISPELEALGETISTLKFAERVATVELGAARVNKDSSDVK 747
DSLGG +KTLM +ISP ET+STL++A+R ++ R+N+D D +
Sbjct: 298 DSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK-NKPRINEDPKDAQ 349
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 209 bits (531), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 197/335 (58%), Gaps = 23/335 (6%)
Query: 406 NIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKE-----GRKSFSFNKVFGPN 460
NI+V CR RP + + + +GD + +K+ E K ++F++VF +
Sbjct: 8 NIKVMCRFRPLNESE---------VNRGDKYV---AKFQGEDTVMIASKPYAFDRVFQSS 55
Query: 461 ATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALND 519
+Q +V++D + +++ VL+GYN IFAYGQT SGK TM G K E +G+ R + D
Sbjct: 56 TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEG-KLHDPEGMGIIPRIVQD 114
Query: 520 LFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRI-NVPDANLV 578
+F + + + I V EIY +++RDLL N + + +NR+ V
Sbjct: 115 IFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSV---HEDKNRVPYVKGCTER 171
Query: 579 PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVD 638
V S ++V++ ++ G+ NR V T MN+ SSRSHS ++V+ + + L G ++LVD
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVD 231
Query: 639 LAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLG 698
LAGSE+V K+ G L EA++INKSLSALG+VI++LA+ + +VPYR+SK+T++LQDSLG
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLG 291
Query: 699 GQAKTLMFVHISPELEALGETISTLKFAERVATVE 733
G +T + + SP ET STL F +R T++
Sbjct: 292 GNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 207/375 (55%), Gaps = 42/375 (11%)
Query: 407 IRVYCRVRPF-----LDGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNA 461
++V R RP G ++ ++ G + + P E K+F+F+ V+ ++
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQILTM--DVKLGQVTLRNPRAAPGELPKTFTFDAVYDASS 80
Query: 462 TQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDL 520
QA+++ +T R LI SVL G+N +FAYGQTG+GKT+TM G + E GV A +
Sbjct: 81 KQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQG-TWVEPELRGVIPNAFEHI 139
Query: 521 FL-ISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRINVPDANLVP 579
F IS R Y + LEIY E++RDLL + K+LE++ + + + + D +
Sbjct: 140 FTHIS--RSQNQQYLVRASYLEIYQEEIRDLLSKEP-GKRLELKENPETGVYIKDLSSFV 196
Query: 580 VSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGT---ILRGSMHL 636
+ ++ +MNLG + RAVG+T MN+ SSRSH+ + V+ + S I G ++L
Sbjct: 197 TKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNL 256
Query: 637 VDLAGSERVDKS------------------------EVTGDRLKEAQHINKSLSALGDVI 672
VDLAGSER +K+ G+R KEA IN SLSALG+VI
Sbjct: 257 VDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVI 316
Query: 673 ASLA-QKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVAT 731
A+LA ++ H+PYR+SKLT+LLQDSLGG AKT+M + P + E++STL+FA R
Sbjct: 317 AALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKN 376
Query: 732 VELGAARVNKDSSDV 746
++ RVN+D D
Sbjct: 377 IK-NKPRVNEDPKDT 390
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 203/347 (58%), Gaps = 25/347 (7%)
Query: 406 NIRVYCRVRPF--LDGQSSFMSTVEHIE-KGDIVITTPSKYGKEGRKSFSFNKVFGPNAT 462
NI+V RVRPF + ++S S VE + ++ + T K RK+++F+ VFG +
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 463 QAEVFSDTRSLIRSVLD----GYNVCIFAYGQTGSGKTFTMTGPKELTEESL-------G 511
Q +V+ RS++ +LD GYN IFAYGQTG+GKTFTM G + EE G
Sbjct: 78 QIDVY---RSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAG 134
Query: 512 VNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLL-VTDGLNKKLEIRNSSQNRI 570
+ R L+ +F + + + V +LEIYNE++ DLL + ++++L++ + +N+
Sbjct: 135 IIPRTLHQIF--EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 571 NVPDANL--VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC--LTVHVQGRDLAS 626
V L + V + ++V +++ G R AT MN SSRSHS +T+H++ +
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 627 GTILR-GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
+++ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ HVPYR
Sbjct: 253 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 312
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
SKLT++LQDSLGG+ +T + ISP L ET+STL++A R +
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 202/347 (58%), Gaps = 25/347 (7%)
Query: 406 NIRVYCRVRPF--LDGQSSFMSTVE-HIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNAT 462
NI+V R RPF + ++S S VE + ++ + T K RK+++F+ VFG +
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 463 QAEVFSDTRSLIRSVLD----GYNVCIFAYGQTGSGKTFTMTGPKELTEESL-------G 511
Q +V+ RS++ +LD GYN IFAYGQTG+GKTFTM G + EE G
Sbjct: 80 QIDVY---RSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 136
Query: 512 VNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLL-VTDGLNKKLEIRNSSQNRI 570
+ R L+ +F + + + V +LEIYNE++ DLL + ++++L++ + +N+
Sbjct: 137 IIPRTLHQIF--EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 194
Query: 571 NVPDANL--VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC--LTVHVQGRDLAS 626
V L + V + ++V +++ G R AT MN SSRSHS +T+H++ +
Sbjct: 195 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 254
Query: 627 GTILR-GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
+++ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ HVPYR
Sbjct: 255 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 314
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
SKLT++LQDSLGG+ +T + ISP L ET+STL++A R +
Sbjct: 315 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 202/347 (58%), Gaps = 25/347 (7%)
Query: 406 NIRVYCRVRPF--LDGQSSFMSTVE-HIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNAT 462
NI+V R RPF + ++S S VE + ++ + T K RK+++F+ VFG +
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 463 QAEVFSDTRSLIRSVLD----GYNVCIFAYGQTGSGKTFTMTGPKELTEESL-------G 511
Q +V+ RS++ +LD GYN IFAYGQTG+GKTFTM G + EE G
Sbjct: 77 QIDVY---RSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 133
Query: 512 VNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLL-VTDGLNKKLEIRNSSQNRI 570
+ R L+ +F + + + V +LEIYNE++ DLL + ++++L++ + +N+
Sbjct: 134 IIPRTLHQIF--EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 191
Query: 571 NVPDANL--VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC--LTVHVQGRDLAS 626
V L + V + ++V +++ G R AT MN SSRSHS +T+H++ +
Sbjct: 192 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 251
Query: 627 GTILR-GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
+++ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ HVPYR
Sbjct: 252 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 311
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
SKLT++LQDSLGG+ +T + ISP L ET+STL++A R +
Sbjct: 312 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 202/347 (58%), Gaps = 25/347 (7%)
Query: 406 NIRVYCRVRPF--LDGQSSFMSTVE-HIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNAT 462
NI+V R RPF + ++S S VE + ++ + T K RK+++F+ VFG +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 463 QAEVFSDTRSLIRSVLD----GYNVCIFAYGQTGSGKTFTMTGPKELTEESL-------G 511
Q +V+ RS++ +LD GYN IFAYGQTG+GKTFTM G + EE G
Sbjct: 78 QIDVY---RSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 134
Query: 512 VNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLL-VTDGLNKKLEIRNSSQNRI 570
+ R L+ +F + + + V +LEIYNE++ DLL + ++++L++ + +N+
Sbjct: 135 IIPRTLHQIF--EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 571 NVPDANL--VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC--LTVHVQGRDLAS 626
V L + V + ++V +++ G R AT MN SSRSHS +T+H++ +
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 627 GTILR-GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
+++ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ HVPYR
Sbjct: 253 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 312
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
SKLT++LQDSLGG+ +T + ISP L ET+STL++A R +
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 202/347 (58%), Gaps = 25/347 (7%)
Query: 406 NIRVYCRVRPF--LDGQSSFMSTVE-HIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNAT 462
NI+V R RPF + ++S S VE + ++ + T K RK+++F+ VFG +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 463 QAEVFSDTRSLIRSVLD----GYNVCIFAYGQTGSGKTFTMTGPKELTEESL-------G 511
Q +V+ RS++ +LD GYN IFAYGQTG+GKTFTM G + EE G
Sbjct: 78 QIDVY---RSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 134
Query: 512 VNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLL-VTDGLNKKLEIRNSSQNRI 570
+ R L+ +F + + + V +LEIYNE++ DLL + ++++L++ + +N+
Sbjct: 135 IIPRTLHQIF--EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 571 NVPDANL--VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC--LTVHVQGRDLAS 626
V L + V + ++V +++ G R AT MN SSRSHS +T+H++ +
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 627 GTILR-GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
+++ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ HVPYR
Sbjct: 253 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 312
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
SKLT++LQDSLGG+ +T + ISP L ET+STL++A R +
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 202/347 (58%), Gaps = 25/347 (7%)
Query: 406 NIRVYCRVRPF--LDGQSSFMSTVE-HIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNAT 462
NI+V R RPF + ++S S VE + ++ + T K RK+++F+ VFG +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 463 QAEVFSDTRSLIRSVLD----GYNVCIFAYGQTGSGKTFTMTGPKELTEESL-------G 511
Q +V+ RS++ +LD GYN IFAYGQTG+GKTFTM G + EE G
Sbjct: 78 QIDVY---RSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDG 134
Query: 512 VNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLL-VTDGLNKKLEIRNSSQNRI 570
+ R L+ +F + + + V +LEIYNE++ DLL + ++++L++ + +N+
Sbjct: 135 IIPRTLHQIF--EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 571 NVPDANL--VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC--LTVHVQGRDLAS 626
V L + V + ++V +++ G R AT MN SSRSHS +T+H++ +
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 627 GTILR-GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
+++ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ HVPYR
Sbjct: 253 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 312
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
SKLT++LQDSLGG+ +T + ISP L ET+STL++A R +
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 202/347 (58%), Gaps = 25/347 (7%)
Query: 406 NIRVYCRVRPF--LDGQSSFMSTVE-HIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNAT 462
NI+V R RPF + ++S S VE + ++ + T K RK+++F+ VFG +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 463 QAEVFSDTRSLIRSVLD----GYNVCIFAYGQTGSGKTFTMTGPKELTEESL-------G 511
Q +V+ RS++ +LD GYN IFAYGQTG+GKTFTM G + EE G
Sbjct: 78 QIDVY---RSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAG 134
Query: 512 VNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLL-VTDGLNKKLEIRNSSQNRI 570
+ R L+ +F + + + V +LEIYNE++ DLL + ++++L++ + +N+
Sbjct: 135 IIPRTLHQIF--EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 571 NVPDANL--VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC--LTVHVQGRDLAS 626
V L + V + ++V +++ G R AT MN SSRSHS +T+H++ +
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 627 GTILR-GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
+++ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ HVPYR
Sbjct: 253 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 312
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
SKLT++LQDSLGG+ +T + ISP L ET+STL++A R +
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 202/347 (58%), Gaps = 25/347 (7%)
Query: 406 NIRVYCRVRPF--LDGQSSFMSTVE-HIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNAT 462
NI+V R RPF + ++S S VE + ++ + T K RK+++F+ VFG +
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 463 QAEVFSDTRSLIRSVLD----GYNVCIFAYGQTGSGKTFTMTGPKELTEESL-------G 511
Q +V+ RS++ +LD GYN IFAYGQTG+GKTFTM G + EE G
Sbjct: 69 QIDVY---RSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 125
Query: 512 VNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLL-VTDGLNKKLEIRNSSQNRI 570
+ R L+ +F + + + V +LEIYNE++ DLL + ++++L++ + +N+
Sbjct: 126 IIPRTLHQIF--EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 183
Query: 571 NVPDANL--VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC--LTVHVQGRDLAS 626
V L + V + ++V +++ G R AT MN SSRSHS +T+H++ +
Sbjct: 184 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 243
Query: 627 GTILR-GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
+++ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ HVPYR
Sbjct: 244 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 303
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
SKLT++LQDSLGG+ +T + ISP L ET+STL++A R +
Sbjct: 304 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 192/341 (56%), Gaps = 30/341 (8%)
Query: 407 IRVYCRVRPFL-----DGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNA 461
+RV RVRP L G S + +E G +T G++ + F F+ V +A
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCL----QVEPGLGRVT----LGRD--RHFGFHVVLAEDA 62
Query: 462 TQAEVF-SDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM--TGPKELTEESLGVNYRALN 518
Q V+ + + L+ + +G+N +FAYGQTGSGKT+TM L E+ G+ RA+
Sbjct: 63 GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMA 122
Query: 519 DLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRINVPDANLV 578
+ F + ++ D + + V LE+Y E+ RDLL ++ +++R + + + V
Sbjct: 123 EAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEV 181
Query: 579 PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLAS--------GTIL 630
V ++V+ ++ +G R GAT +N SSRSH+ TV ++ R A G +L
Sbjct: 182 DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL 241
Query: 631 RGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLA---QKNAHVPYRNS 687
H VDLAGSERV K+ TG+RLKE+ IN SL ALG+VI++L ++ +H+PYR+S
Sbjct: 242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDS 301
Query: 688 KLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAER 728
K+T++L+DSLGG AKT+M +SP ET++TL +A R
Sbjct: 302 KITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 199 bits (507), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 193/353 (54%), Gaps = 32/353 (9%)
Query: 401 QDLKGNIRVYCRVRP-FLDGQSSFMSTVEHIEKGDIVITTPSK------YGKEGRKS--- 450
+DL +++V RVRP +++ V H+ I++ P + +GK+
Sbjct: 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVI 65
Query: 451 --------FSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501
F F+ VF +TQ+EVF T + ++RS L+GYN + AYG TG+GKT TM G
Sbjct: 66 KKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLG 125
Query: 502 PKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLE 561
+ + GV Y + L+ ++ ++ V LE+YNEQ+RDLLV G L
Sbjct: 126 ----SADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSG---PLA 178
Query: 562 IRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQG 621
+R +Q + V L S+ +++ +++ G KNR T MN SSRSH+ ++++
Sbjct: 179 VREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQ 238
Query: 622 RDLASG---TILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLA-- 676
+D + + M L+DLAGSER S G R E +IN+SL ALG+VI +LA
Sbjct: 239 QDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADS 298
Query: 677 -QKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAER 728
+KN H+PYRNSKLT+LL+DSLGG +T+M +SP +T +TLK+A R
Sbjct: 299 KRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANR 351
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 199 bits (507), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 202/347 (58%), Gaps = 25/347 (7%)
Query: 406 NIRVYCRVRPF--LDGQSSFMSTVE-HIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNAT 462
NI+V R RPF + ++S S VE + ++ + T K RK+++F+ VFG +
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 463 QAEVFSDTRSLIRSVLD----GYNVCIFAYGQTGSGKTFTMTGPKELTEESL-------G 511
Q +V+ RS++ +LD GYN IFAYGQTG+GKTFTM G + EE G
Sbjct: 63 QIDVY---RSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 119
Query: 512 VNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLL-VTDGLNKKLEIRNSSQNRI 570
+ R L+ +F + + + V +LEIYNE++ DLL + ++++L++ + +N+
Sbjct: 120 IIPRTLHQIF--EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 177
Query: 571 NVPDANL--VPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC--LTVHVQGRDLAS 626
V L + V + ++V +++ G R AT MN SSRSHS +T+H++ +
Sbjct: 178 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 237
Query: 627 GTILR-GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
+++ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ HVPYR
Sbjct: 238 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 297
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
SKLT++LQDSLGG+ +T + ISP L ET+STL++A R +
Sbjct: 298 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 186/348 (53%), Gaps = 46/348 (13%)
Query: 449 KSFSFNKVFGPNATQAEVFSDTRSLIRSV--------LDGYNVCIFAYGQTGSGKTFTMT 500
KSF+F+K F + T+ E ++ + S+ +GY+ CIFAYGQTGSGK++TM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 501 GPKELTEESLGVNYRALNDLF-LISNQRRDT--IHYDIFVQMLEIYNEQVRDLLVTDGLN 557
G T + G+ R DLF I++ + +T I Y++ V E+YNE VRDLL N
Sbjct: 156 G----TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPN 211
Query: 558 KK---LEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSC 614
K L++R S V D VPV ++I M +G +R V +T MND SSRSH+
Sbjct: 212 KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAV 271
Query: 615 LTVHVQ--GRDLASG-TILRGS-MHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGD 670
T+ ++ DL + T R S + LVDLAGSER +E TG RL+E +INKSL+ LG
Sbjct: 272 FTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGR 331
Query: 671 VIASLAQ----------------------KNAHVPYRNSKLTQLLQDSLGGQAKTLMFVH 708
VIA+LA N+ VPYR+S LT LL+DSLGG +KT M
Sbjct: 332 VIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIAC 391
Query: 709 ISPELEALGETISTLKFAERVATVELGAARVNKDSSDVKELKEQIVSL 756
ISP ET+STL++A++ + A D E QI S+
Sbjct: 392 ISP--TDYDETLSTLRYADQAKRIRTRAVVNQVDGVSAAERDAQIPSI 437
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 195/355 (54%), Gaps = 31/355 (8%)
Query: 405 GNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPN---- 460
+++V RVRPF + S S G K KE KSFSF+ + +
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 79
Query: 461 ----ATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYR 515
A+Q +V+ D +++ +GYNVCIFAYGQTG+GK++TM G +E ++ G+ +
Sbjct: 80 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ--GIIPQ 137
Query: 516 ALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-KLEIRNSSQNRINVP 573
DLF I++ D + Y + V +EIY E+VRDLL + NK L +R V
Sbjct: 138 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVE 195
Query: 574 DANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTV-HVQGRDLASGTILR- 631
D + + V+S ND+ ++M+ G K R V AT MN+ SSRSH+ + Q R A I
Sbjct: 196 DLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 255
Query: 632 --GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA--------- 680
+ LVDLAGSER D + G RLKE +INKSL+ LG VI++LA+ ++
Sbjct: 256 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 315
Query: 681 ---HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
+PYR+S LT LL+++LGG ++T M +SP ET+STL++A+R +
Sbjct: 316 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 195/355 (54%), Gaps = 31/355 (8%)
Query: 405 GNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPN---- 460
+++V RVRPF + S S G K KE KSFSF+ + +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 461 ----ATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYR 515
A+Q +V+ D +++ +GYNVCIFAYGQTG+GK++TM G +E ++ G+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ--GIIPQ 121
Query: 516 ALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-KLEIRNSSQNRINVP 573
DLF I++ D + Y + V +EIY E+VRDLL + NK L +R V
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVE 179
Query: 574 DANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTV-HVQGRDLASGTILR- 631
D + + V+S ND+ ++M+ G K R V AT MN+ SSRSH+ + Q R A I
Sbjct: 180 DLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239
Query: 632 --GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA--------- 680
+ LVDLAGSER D + G RLKE +INKSL+ LG VI++LA+ ++
Sbjct: 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 299
Query: 681 ---HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
+PYR+S LT LL+++LGG ++T M +SP ET+STL++A+R +
Sbjct: 300 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/348 (38%), Positives = 194/348 (55%), Gaps = 30/348 (8%)
Query: 407 IRVYCRVRPFLDGQSSFMS-TVEHIEKGDIVI----TTPSKYGKEGR-KSFSFNKVFGP- 459
++V R+RP ++ + V ++ +++ T SK G+ K F+++ F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 460 -------NATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLG 511
A Q VF +++++ DGYN CIFAYGQTGSGK++TM G T + G
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG----TADQPG 118
Query: 512 VNYRALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRI 570
+ R + LF + + + + V +EIYNE+VRDLL G + L++R S
Sbjct: 119 LIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGP 178
Query: 571 NVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQG--RDLASGT 628
V + + V+S D+ +M+ G K+R V AT MN+ SSRSH+ + + D+ SGT
Sbjct: 179 YVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGT 238
Query: 629 ILR--GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLA------QKNA 680
G + LVDLAGSER K+ GDRLKE +INKSL+ LG VI++LA KN
Sbjct: 239 SGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNK 298
Query: 681 HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAER 728
VPYR+S LT LL+DSLGG +KT M +SP + ET+STL++A+R
Sbjct: 299 FVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADR 346
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 195/355 (54%), Gaps = 31/355 (8%)
Query: 405 GNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPN---- 460
+++V RVRPF + S S G K KE KSFSF+ + +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 461 ----ATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYR 515
A+Q +V+ D +++ +GYNVCIFAYGQTG+GK++TM G +E ++ G+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ--GIIPQ 121
Query: 516 ALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-KLEIRNSSQNRINVP 573
DLF I++ D + Y + V +EIY E+VRDLL + NK L +R V
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVE 179
Query: 574 DANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTV-HVQGRDLASGTILR- 631
D + + V+S ND+ ++M+ G K R V AT MN+ SSRSH+ + Q R A I
Sbjct: 180 DLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239
Query: 632 --GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA--------- 680
+ LVDLAGSER D + G RLKE +INKSL+ LG VI++LA+ ++
Sbjct: 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 299
Query: 681 ---HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
+PYR+S LT LL+++LGG ++T M +SP ET+STL++A+R +
Sbjct: 300 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 196 bits (498), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 195/355 (54%), Gaps = 31/355 (8%)
Query: 405 GNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPN---- 460
+++V RVRPF + S S G K KE KSFSF+ + +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 461 ----ATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYR 515
A+Q +V+ D +++ +GYNVCIFAYGQTG+GK++TM G +E ++ G+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ--GIIPQ 121
Query: 516 ALNDLF-LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK-KLEIRNSSQNRINVP 573
DLF I++ D + Y + V +EIY E+VRDLL + NK L +R V
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVE 179
Query: 574 DANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTV-HVQGRDLASGTILR- 631
D + + V+S ND+ ++M+ G K R V AT MN+ SSRSH+ + Q R A I
Sbjct: 180 DLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239
Query: 632 --GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA--------- 680
+ LVDLAGSER D + G RLKE +INKSL+ LG VI++LA+ ++
Sbjct: 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 299
Query: 681 ---HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
+PYR+S LT LL+++LGG ++T M +SP ET+STL++A+R +
Sbjct: 300 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 190/341 (55%), Gaps = 30/341 (8%)
Query: 407 IRVYCRVRPFL-----DGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNA 461
+RV RVRP L G S + +E G +T G++ + F F+ V +A
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCL----QVEPGLGRVT----LGRD--RHFGFHVVLAEDA 62
Query: 462 TQAEVF-SDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM--TGPKELTEESLGVNYRALN 518
Q V+ + + L+ + +G+N +FAYGQTGSGKT+TM L E+ G+ RA+
Sbjct: 63 GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMA 122
Query: 519 DLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRINVPDANLV 578
+ F + ++ D + + V LE+Y E+ RDLL ++ +++R + + + V
Sbjct: 123 EAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEV 181
Query: 579 PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLAS--------GTIL 630
V ++V+ ++ +G R GAT +N SSRSH+ TV ++ R A G +L
Sbjct: 182 DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLL 241
Query: 631 RGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLA---QKNAHVPYRNS 687
H VDLAGSERV K+ TG+ KE+ IN SL ALG+VI++L ++ +++PYR+S
Sbjct: 242 VSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDS 301
Query: 688 KLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAER 728
K+T++L+DSLGG AKT+M +SP ET++TL +A R
Sbjct: 302 KITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 189 bits (480), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 184/331 (55%), Gaps = 19/331 (5%)
Query: 404 KGNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNATQ 463
+G + V RVRP + S T + K D + Y +G KSF+F++VF N T
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVI----YQVDGSKSFNFDRVFHGNETT 58
Query: 464 AEVFSDTRS-LIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFL 522
V+ + + +I S + GYN IFAYGQT SGKT+TM G +E+ LGV RA++D+F
Sbjct: 59 KNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG----SEDHLGVIPRAIHDIFQ 114
Query: 523 ISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRINVPDANLVPVSS 582
+ D + + V +EIYNE + DLL K L IR + V D V +
Sbjct: 115 KIKKFPDR-EFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYT 173
Query: 583 TNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDL-----ASGTILRGSMHLV 637
+ ++ + G+K+R G T MN RSSRSH+ + ++ R+ G++ ++LV
Sbjct: 174 SEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLV 233
Query: 638 DLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLA--QKNAHVPYRNSKLTQLLQD 695
DLAGSER ++ G RLKE +IN+SL LG VI L+ Q + YR+SKLT++LQ+
Sbjct: 234 DLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQN 293
Query: 696 SLGGQAKTLMFVHISPELEALGETISTLKFA 726
SLGG AKT + I+P + ET++ L+FA
Sbjct: 294 SLGGNAKTRIICTITP--VSFDETLTALQFA 322
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 187/333 (56%), Gaps = 15/333 (4%)
Query: 407 IRVYCRVRPFLDGQS--SFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNATQA 464
+RV R+RPF+DG + S V ++ + I + +E K + F+ +G +TQ
Sbjct: 23 VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNH-QETLK-YQFDAFYGERSTQQ 80
Query: 465 EVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLF-L 522
++++ + + ++R +L+G N + AYG TG+GKT TM G + E GV RAL DL L
Sbjct: 81 DIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG----SPEQPGVIPRALMDLLQL 136
Query: 523 ISNQRRDTIHYDIFVQM--LEIYNEQVRDLLVTDGLNKKLEIRNSSQNRINVPDANLVPV 580
+ + + + V M LEIY E+V DLL D + L IR + I +P + P+
Sbjct: 137 TREEGAEGRPWALSVTMSYLEIYQEKVLDLL--DPASGDLVIREDCRGNILIPGLSQKPI 194
Query: 581 SSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRD-LASGTILRGSMHLVDL 639
SS D +NR VGAT +N RSSRSH+ L V V R+ LA G ++L+DL
Sbjct: 195 SSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDL 254
Query: 640 AGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLGG 699
AGSE ++ G RLKE+ IN SL LG V+ +L Q VPYR+SKLT+LLQDSLGG
Sbjct: 255 AGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGG 314
Query: 700 QAKTLMFVHISPELEALGETISTLKFAERVATV 732
A +++ +I+PE +T+S L FA R V
Sbjct: 315 SAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 176 bits (445), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 162/291 (55%), Gaps = 22/291 (7%)
Query: 449 KSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG--PKEL 505
++F F+ F A+ V+ T R L++++ +G FAYGQTGSGKT TM G +
Sbjct: 121 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS 180
Query: 506 TEESLGVNYRALNDLFLISNQ-RRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIR- 563
S G+ A D+FL+ NQ R ++ +++V EIYN +V DLL NKK ++R
Sbjct: 181 QNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL-----NKKAKLRV 235
Query: 564 -NSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTV--HVQ 620
S+ ++ V V+ +DVI+M+N+G R G T N SSRSH+C + +
Sbjct: 236 LEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK 295
Query: 621 GRDLASGTILRGSMHLVDLAGSER-VDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN 679
GR L G LVDLAG+ER D S E INKSL AL + I +L Q
Sbjct: 296 GR-------LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK 348
Query: 680 AHVPYRNSKLTQLLQDSLGGQ-AKTLMFVHISPELEALGETISTLKFAERV 729
AH P+R SKLTQ+L+DS G+ ++T M ISP + + T++TL++A+RV
Sbjct: 349 AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 399
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 162/291 (55%), Gaps = 22/291 (7%)
Query: 449 KSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG--PKEL 505
++F F+ F A+ V+ T R L++++ +G FAYGQTGSGKT TM G +
Sbjct: 49 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS 108
Query: 506 TEESLGVNYRALNDLFLISNQ-RRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIR- 563
S G+ A D+FL+ NQ R ++ +++V EIYN +V DLL NKK ++R
Sbjct: 109 QNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL-----NKKAKLRV 163
Query: 564 -NSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTV--HVQ 620
S+ ++ V V+ +DVI+M+N+G R G T N SSRSH+C + +
Sbjct: 164 LEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK 223
Query: 621 GRDLASGTILRGSMHLVDLAGSER-VDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN 679
GR L G LVDLAG+ER D S E INKSL AL + I +L Q
Sbjct: 224 GR-------LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK 276
Query: 680 AHVPYRNSKLTQLLQDSLGGQ-AKTLMFVHISPELEALGETISTLKFAERV 729
AH P+R SKLTQ+L+DS G+ ++T M ISP + + T++TL++A+RV
Sbjct: 277 AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 327
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 160/291 (54%), Gaps = 22/291 (7%)
Query: 449 KSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG--PKEL 505
++F F+ F A+ V+ T R L++++ +G FAYGQTGSGKT TM G +
Sbjct: 101 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKA 160
Query: 506 TEESLGVNYRALNDLFLISNQ-RRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIR- 563
S G+ A D+FL+ NQ + +++V EIYN ++ DLL NKK ++R
Sbjct: 161 QNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL-----NKKAKLRV 215
Query: 564 -NSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTV--HVQ 620
+ ++ V V+S +DVI+M+++G R G T N SSRSH+C + +
Sbjct: 216 LEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK 275
Query: 621 GRDLASGTILRGSMHLVDLAGSER-VDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN 679
GR + G LVDLAG+ER D S E INKSL AL + I +L Q
Sbjct: 276 GR-------MHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK 328
Query: 680 AHVPYRNSKLTQLLQDSLGGQ-AKTLMFVHISPELEALGETISTLKFAERV 729
AH P+R SKLTQ+L+DS G+ ++T M ISP + + T++TL++A+RV
Sbjct: 329 AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRV 379
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 155/292 (53%), Gaps = 14/292 (4%)
Query: 450 SFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEE 508
SF + V +A+Q V+ + ++ LDGYN I YGQTG+GKT+TM G E +
Sbjct: 73 SFKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATE-NYK 130
Query: 509 SLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLL-----VTDGLNKKLEIR 563
G+ RAL +F + +R T + V LEIYNE + DLL V + +
Sbjct: 131 HRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVE 189
Query: 564 NSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQG-- 621
N I +L S D ++ G+ NR + + MN SSRSH T++++
Sbjct: 190 NPQGVFIKGLSVHLT--SQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHS 247
Query: 622 RDLASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLA-QKNA 680
R L+ + ++LVDLAGSER+ KS G LKEA +INKSLS L I +L QK
Sbjct: 248 RTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRD 307
Query: 681 HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVATV 732
H+P+R KLT L+DSLGG ++ +I E L ET+S+L+FA R+ V
Sbjct: 308 HIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 150/281 (53%), Gaps = 19/281 (6%)
Query: 451 FSFNKVFGPNATQAEVFSD-TRSLIRSVLDGYNVCIFAYGQTGSGKTFTM--TGPKELTE 507
F F+ F +Q E++ L+ +L+G+ AYGQTG+GK+++M T P E+
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 508 ESLGVNYRALNDLF--LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNS 565
E LG+ RAL D+F + + Q + ++ +EIYNE+ DLL G + + +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL---GSTPHMPMVAA 179
Query: 566 SQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA 625
R +P+ S D+ ++ LG +NR V T MN SSRSH+ +T+HV+ +
Sbjct: 180 RCQR-----CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHH 234
Query: 626 SGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
S M++VDLAGSE V ++ G +E +IN L ++ V+ S+A + +PYR
Sbjct: 235 S------RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYR 288
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFA 726
+S LT +LQ SL Q+ ISP L ET+STL+F
Sbjct: 289 DSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFG 329
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 151/281 (53%), Gaps = 19/281 (6%)
Query: 451 FSFNKVFGPNATQAEVF-SDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM--TGPKELTE 507
F F+ F +Q E++ + L+ +L+G+ AYGQTG+GK+++M T P E+
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 508 ESLGVNYRALNDLF--LISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNS 565
E LG+ RAL D+F + + Q + ++ +EIYNE+ DLL G + + +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL---GSTPHMPMVAA 179
Query: 566 SQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA 625
R +P+ S D+ ++ LG +NR V T MN SSRSH+ +T+HV+ +
Sbjct: 180 RCQR-----CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHH 234
Query: 626 SGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYR 685
S M++VDLAGSE V ++ G +E +IN L ++ V+ S+A + +PYR
Sbjct: 235 S------RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYR 288
Query: 686 NSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFA 726
+S LT +LQ SL Q+ ISP L ET+STL+F
Sbjct: 289 DSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFG 329
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 153/286 (53%), Gaps = 10/286 (3%)
Query: 448 RKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYNVC-IFAYGQTGSGKTFTMTGPKEL 505
R F +KVF V+ +T + LI + + VC FAYGQTGSGKT+TM G +
Sbjct: 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPY 108
Query: 506 TE-ESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRN 564
+ ++ G+ A D+F N IF+ EIY ++ DLL + LE
Sbjct: 109 GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALE--- 165
Query: 565 SSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDL 624
+ + + V D ++ V + ++I M G R +G + ND SSRSH+ L + + +D+
Sbjct: 166 NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDL--KDI 223
Query: 625 ASGTILRGSMHLVDLAGSER-VDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVP 683
T L G + +DLAGSER D + +IN+SL AL + I ++ H+P
Sbjct: 224 NKNTSL-GKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIP 282
Query: 684 YRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERV 729
+R+S+LT++L+D G++K++M +ISP + +T++TL+++ RV
Sbjct: 283 FRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRV 328
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 148/287 (51%), Gaps = 14/287 (4%)
Query: 449 KSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG--PKEL 505
++F F+ F +A V+ T R L+ ++ + FAYGQTGSGKT TM G +
Sbjct: 139 QTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKN 198
Query: 506 TEESLGVNYRALNDLFLISNQ-RRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRN 564
+ S G+ A D+FL+ + + ++ EIY+ +V DLL KL +
Sbjct: 199 QDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLL---NRKTKLRVLE 255
Query: 565 SSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDL 624
+ ++ V V DV++++++G R G T+ N SSRSH+ + ++ +
Sbjct: 256 DGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK 315
Query: 625 ASGTILRGSMHLVDLAGSER-VDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVP 683
L G L+DLAG+ER D S E INKSL AL + I +L + H P
Sbjct: 316 -----LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTP 370
Query: 684 YRNSKLTQLLQDSLGGQ-AKTLMFVHISPELEALGETISTLKFAERV 729
+R SKLTQ+L+DS G+ ++T M ISP + + T++TL++A RV
Sbjct: 371 FRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRV 417
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 138/247 (55%), Gaps = 22/247 (8%)
Query: 406 NIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKE----GR-KSFSFNKVFGPN 460
+I+V CR RP + + I +GD I P G+E G+ K + F++V PN
Sbjct: 7 SIKVMCRFRPLNEAE---------ILRGDKFI--PKFKGEETVVIGQGKPYVFDRVLPPN 55
Query: 461 ATQAEVFSDT-RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALND 519
TQ +V++ + +++ VL+GYN IFAYGQT SGKT TM G K + +G+ R +D
Sbjct: 56 TTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHDPQLMGIIPRIAHD 114
Query: 520 LFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRI-NVPDANLV 578
+F + + + I V EIY +++RDLL N + + +NR+ V
Sbjct: 115 IFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAV---HEDKNRVPYVKGCTER 171
Query: 579 PVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVD 638
VSS +V+++++ G+ NR V T MN+ SSRSHS ++++ ++ + L G ++LVD
Sbjct: 172 FVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVD 231
Query: 639 LAGSERV 645
LAGSE+V
Sbjct: 232 LAGSEKV 238
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 658 AQHINKSLSALGDVIASLAQ-KNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEAL 716
A++INKSLSALG+VI++LA+ HVPYR+SK+T++LQDSL G +T + + SP +
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 717 GETISTLKFAERVATVE 733
ET STL F +R T++
Sbjct: 61 AETKSTLMFGQRAKTIK 77
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 662 NKSLSALGDVIASLAQ-KNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETI 720
NKSLSALG+VI++LA+ HVPYR+SK+T++LQDSLGG +T + + SP + ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 721 STLKFAERVATVE 733
STL F +R T++
Sbjct: 61 STLMFGQRAKTIK 73
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 29/135 (21%)
Query: 38 EASLRRYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVV 97
EA LR W+ G+ +G D F+ GL+ G ILC ++NK+QPG+V K+
Sbjct: 19 EAELRT-----WIEGLTGLSIGPD---------FQKGLKDGTILCTLMNKLQPGSVPKI- 63
Query: 98 EGPCDSVVIPDGAALSAFQYFENVRNFLVAAEELGL---PTFEASDLEQGGKSAMARIVN 154
++ + EN+ NF+ A G+ FEA+DL + G ++
Sbjct: 64 -----------NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSL 112
Query: 155 CVLALKSYSEWKQGG 169
LA K+ ++ Q G
Sbjct: 113 LALAGKAKTKGLQSG 127
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 26/128 (20%)
Query: 42 RRYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPC 101
R E W+ G +G + F GL+ GIILC +NK+QPG+V K+ E
Sbjct: 18 REQELREWIEGVTGRRIGNN---------FMDGLKDGIILCEFINKLQPGSVKKINE--- 65
Query: 102 DSVVIPDGAALSAFQYFENVRNFLVAAEELGLP---TFEASDLEQGGKSAMARIVNCVLA 158
+ + EN+ NF+ A + G+ FEA+DL + + ++ + +LA
Sbjct: 66 ---------STQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFE--NTNHTQVQSTLLA 114
Query: 159 LKSYSEWK 166
L S ++ K
Sbjct: 115 LASMAKTK 122
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 24/96 (25%)
Query: 49 WLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPD 108
W+ + G +G + F GL+ G+ILC ++NK+QPG+V KV +
Sbjct: 11 WIEGATGRRIG---------DNFMDGLKDGVILCELINKLQPGSVQKVND---------- 51
Query: 109 GAALSAFQYFENVRNFLVAAEELGLP---TFEASDL 141
+ + EN+ NFL A + G+ FEA+DL
Sbjct: 52 --PVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDL 85
>pdb|3I6X|A Chain A, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|B Chain B, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|C Chain C, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|D Chain D, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
Length = 193
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 45 EAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSV 104
EA W+ +G+DLP EE GLR+G+ L + N P V+ ++ D
Sbjct: 51 EAKRWME----ACLGEDLPPTTELEE---GLRNGVYLAKLGNFFSPKVVS--LKKIYDRE 101
Query: 105 VIPDGAALSAFQYFENVRNFLVAAEELGLPTF---EASDLEQGGKSAMARIVNCVLALKS 161
A F++ +NV +L A +E+GLP E +D+ + M R + C+ AL
Sbjct: 102 QTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYD--RKNMPRCIYCIHALSL 159
Query: 162 Y 162
Y
Sbjct: 160 Y 160
>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of
An Iqgap Protein From Schizosaccharomyces Pombe
Length = 203
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 28/148 (18%)
Query: 23 GPRFSDINLASRKADEASLRRY-----EAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRS 77
G + S+ LA+++ + Y EA W+ + +G +G P E+ LR+
Sbjct: 32 GTKGSNTRLAAKQRETLQAYDYLCRVDEAKKWIEECLGTDLG---PTSTFEQ----SLRN 84
Query: 78 GIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVRNFLVAAEELGLPT-- 135
G++L ++ K QP + K+ + F++ +N+ FL +GLP
Sbjct: 85 GVVLALLVQKFQPDKLIKIFY-----------SNELQFRHSDNINKFLDFIHGIGLPEIF 133
Query: 136 -FEASDLEQGGKSAMARIVNCVLALKSY 162
FE +D+ +G + +++ C+ AL +
Sbjct: 134 HFELTDIYEGKN--LPKVIYCIHALSYF 159
>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of Rng2
From Schizosaccharomyces Pombe
Length = 159
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 23/131 (17%)
Query: 35 KADEASLRRYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVA 94
+A + R EA W+ + +G +G P E+ LR+G++L ++ K QP +
Sbjct: 5 QAYDYLCRVDEAKKWIEECLGTDLG---PTSTFEQ----SLRNGVVLALLVQKFQPDKLI 57
Query: 95 KVVEGPCDSVVIPDGAALSAFQYFENVRNFLVAAEELGLPT---FEASDLEQGGKSAMAR 151
K+ + F++ +N+ FL +GLP FE +D+ +G + +
Sbjct: 58 KIFY-----------SNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKN--LPK 104
Query: 152 IVNCVLALKSY 162
++ C+ AL +
Sbjct: 105 VIYCIHALSYF 115
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 65 QPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVRNF 124
QP E F+ L+ G +LC ++N + P A V + A+ AF+ E + F
Sbjct: 38 QPGRENFQNWLKDGTVLCELINALYPEGQAPVKK---------IQASTMAFKQMEQISQF 88
Query: 125 LVAAEELGLPT---FEASDLEQGGKSA 148
L AAE G+ T F+ DL +G A
Sbjct: 89 LQAAERYGINTTDIFQTVDLWEGKNMA 115
>pdb|2RR8|A Chain A, Solution Structure Of Calponin Homology Domain Of Iqgap1
Length = 190
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 45 EAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSV 104
EA W+ +G+DLP EE GLR+G+ L + N P V+ ++ D
Sbjct: 29 EAKRWME----ACLGEDLPPTTELEE---GLRNGVYLAKLGNFFSPKVVS--LKKIYDRE 79
Query: 105 VIPDGAALSAFQYFENVRNFLVAAEELGLPTF---EASDLEQGGKSAMARIVNCVLALKS 161
A F++ +NV +L A +E+GLP E +D+ + M R + C+ AL
Sbjct: 80 QTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYD--RKNMPRCIYCIHALSL 137
Query: 162 Y 162
Y
Sbjct: 138 Y 138
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 75 LRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVRNFLV-AAEELGL 133
L+ G++LC +L ++ PG + KV P S + N+R FL L L
Sbjct: 45 LKDGVVLCRLLERLLPGTIEKVYPEP-----------RSESECLSNIREFLRGCGASLRL 93
Query: 134 PTFEASDLEQG 144
TF+A+DL QG
Sbjct: 94 ETFDANDLYQG 104
>pdb|1UJO|A Chain A, Solution Structure Of The Ch Domain From Mouse Trangelin
Length = 144
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 71 FRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVRNFLVAAEE 130
F++ L++G+IL ++N + P EG V +P+ F+ E V FL AAE+
Sbjct: 36 FQVWLKNGVILSKLVNSLYP-------EG-SKPVKVPENPPSMVFKQMEQVAQFLKAAED 87
Query: 131 LGL---PTFEASDLEQGGKSAMARIVNCVLALKSYS 163
G+ F+ DL +G MA + ++AL S +
Sbjct: 88 YGVIKTDMFQTVDLYEG--KDMAAVQRTLMALGSLA 121
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 49 WLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPD 108
WL S+GV+ EE + L++G++LC ++N++ PG+V K P
Sbjct: 14 WLI-SLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDP-------- 64
Query: 109 GAALSAFQYFENVRNFLVAAEELGLPTFEASDLEQGGKSAMARIVNCVLALKSYSE 164
+ N+ +FL L + F+ DL G +++++ +LA+ +E
Sbjct: 65 ---QTEADCINNINDFLKGCATLQVEIFDPDDLYSG--VNFSKVLSTLLAVNKATE 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,845,188
Number of Sequences: 62578
Number of extensions: 1173636
Number of successful extensions: 2432
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2136
Number of HSP's gapped (non-prelim): 90
length of query: 1035
length of database: 14,973,337
effective HSP length: 109
effective length of query: 926
effective length of database: 8,152,335
effective search space: 7549062210
effective search space used: 7549062210
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)