Query 001666
Match_columns 1035
No_of_seqs 610 out of 2841
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 1.1E-91 2.4E-96 837.7 36.1 422 336-760 242-668 (670)
2 KOG4280 Kinesin-like protein [ 100.0 7.8E-85 1.7E-89 756.8 26.4 358 404-766 4-371 (574)
3 KOG0245 Kinesin-like protein [ 100.0 1.6E-83 3.5E-88 757.4 23.7 354 405-763 4-380 (1221)
4 KOG0243 Kinesin-like protein [ 100.0 3.7E-82 8E-87 760.1 27.9 358 404-764 48-424 (1041)
5 PLN03188 kinesin-12 family pro 100.0 1.5E-79 3.2E-84 742.9 38.0 350 404-766 97-468 (1320)
6 cd01370 KISc_KIP3_like Kinesin 100.0 2.4E-78 5.2E-83 680.3 35.3 320 406-732 1-338 (338)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.7E-77 3.8E-82 673.1 36.0 320 405-732 1-337 (337)
8 KOG0240 Kinesin (SMY1 subfamil 100.0 8.7E-78 1.9E-82 681.7 24.0 330 404-742 6-340 (607)
9 cd01368 KISc_KIF23_like Kinesi 100.0 4E-76 8.7E-81 664.0 35.8 315 406-730 2-345 (345)
10 KOG0242 Kinesin-like protein [ 100.0 6.8E-77 1.5E-81 712.8 28.1 355 404-766 5-367 (675)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.7E-74 3.7E-79 653.2 37.6 328 405-736 1-353 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 3.1E-74 6.8E-79 643.1 33.8 314 405-730 1-322 (322)
13 cd01376 KISc_KID_like Kinesin 100.0 1E-73 2.2E-78 638.1 35.6 313 406-730 1-319 (319)
14 KOG0241 Kinesin-like protein [ 100.0 7.2E-75 1.5E-79 671.0 25.8 356 404-764 3-384 (1714)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 3.4E-73 7.5E-78 637.3 37.2 325 405-732 1-333 (333)
16 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.4E-73 9.6E-78 640.6 37.4 332 405-740 2-350 (352)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.9E-73 8.4E-78 634.5 36.2 320 405-732 2-325 (325)
18 cd01366 KISc_C_terminal Kinesi 100.0 1.1E-72 2.3E-77 631.8 38.2 324 404-735 1-329 (329)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 1.1E-72 2.4E-77 630.1 35.5 314 406-732 1-321 (321)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 1.7E-72 3.7E-77 633.0 36.4 320 406-733 2-341 (341)
21 cd01375 KISc_KIF9_like Kinesin 100.0 5.5E-72 1.2E-76 627.9 35.5 319 406-730 1-334 (334)
22 cd00106 KISc Kinesin motor dom 100.0 8.9E-69 1.9E-73 598.8 37.9 321 406-730 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 1.8E-68 3.9E-73 598.6 36.9 324 406-737 1-333 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 3.9E-68 8.5E-73 595.2 25.8 319 412-732 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 8.2E-65 1.8E-69 587.4 24.4 330 402-736 28-440 (809)
26 KOG0246 Kinesin-like protein [ 100.0 3.9E-64 8.4E-69 568.3 29.2 326 405-736 208-545 (676)
27 KOG0244 Kinesin-like protein [ 100.0 1.8E-63 3.9E-68 591.0 7.5 341 413-764 1-350 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 7.9E-59 1.7E-63 551.7 27.9 344 403-763 20-369 (568)
29 cd01363 Motor_domain Myosin an 100.0 3.5E-49 7.5E-54 409.2 19.1 176 466-711 8-186 (186)
30 KOG2046 Calponin [Cytoskeleton 99.9 5.5E-23 1.2E-27 211.0 11.7 119 32-167 12-133 (193)
31 COG5199 SCP1 Calponin [Cytoske 99.7 5.8E-18 1.3E-22 165.9 9.3 105 43-169 15-122 (178)
32 cd00014 CH Calponin homology d 99.5 1E-14 2.3E-19 136.9 8.3 103 42-163 2-106 (107)
33 KOG2128 Ras GTPase-activating 99.5 6.5E-14 1.4E-18 174.0 9.6 122 25-168 22-150 (1401)
34 COG5261 IQG1 Protein involved 99.5 7.6E-14 1.6E-18 165.6 8.3 119 30-169 33-154 (1054)
35 KOG0532 Leucine-rich repeat (L 99.4 9.4E-14 2E-18 160.9 6.8 130 23-163 553-686 (722)
36 KOG2996 Rho guanine nucleotide 99.4 2.3E-13 5E-18 156.0 8.6 115 45-174 6-129 (865)
37 smart00033 CH Calponin homolog 99.4 4.7E-13 1E-17 124.5 8.0 100 43-159 2-103 (103)
38 PF00307 CH: Calponin homology 99.3 1.4E-11 3E-16 115.7 9.5 105 44-164 2-108 (108)
39 COG5059 KIP1 Kinesin-like prot 99.0 4E-12 8.7E-17 152.9 -12.3 269 390-676 291-566 (568)
40 KOG0046 Ca2+-binding actin-bun 97.6 5.1E-05 1.1E-09 88.5 4.5 107 43-162 121-233 (627)
41 PF11971 CAMSAP_CH: CAMSAP CH 97.5 0.00011 2.3E-09 68.2 4.9 72 62-143 7-83 (85)
42 PF06395 CDC24: CDC24 Calponin 96.7 0.003 6.5E-08 59.1 5.9 81 69-159 4-88 (89)
43 KOG0046 Ca2+-binding actin-bun 94.9 0.12 2.5E-06 61.5 9.7 99 45-163 392-494 (627)
44 COG0556 UvrB Helicase subunit 93.1 0.15 3.3E-06 61.0 6.2 92 449-548 3-101 (663)
45 PF00308 Bac_DnaA: Bacterial d 91.2 0.09 2E-06 56.8 1.3 51 449-501 3-53 (219)
46 TIGR01242 26Sp45 26S proteasom 90.6 0.27 5.9E-06 56.9 4.5 18 483-500 157-174 (364)
47 PRK06893 DNA replication initi 88.1 0.33 7.1E-06 52.7 2.6 49 448-501 10-58 (229)
48 COG2805 PilT Tfp pilus assembl 88.0 0.25 5.3E-06 56.0 1.5 31 471-501 114-144 (353)
49 KOG0517 Beta-spectrin [Cytoske 87.8 2 4.4E-05 57.6 9.6 82 45-145 52-135 (2473)
50 COG5069 SAC6 Ca2+-binding acti 87.5 0.65 1.4E-05 54.9 4.6 84 41-135 125-209 (612)
51 PRK06620 hypothetical protein; 87.1 0.25 5.4E-06 53.3 0.9 51 448-501 10-63 (214)
52 PRK14086 dnaA chromosomal repl 86.9 0.32 6.9E-06 60.1 1.9 52 448-501 282-333 (617)
53 PRK12377 putative replication 86.8 0.42 9E-06 52.9 2.5 49 452-501 72-120 (248)
54 COG2804 PulE Type II secretory 86.3 0.35 7.5E-06 58.1 1.6 31 471-501 247-277 (500)
55 PRK08084 DNA replication initi 85.9 0.42 9.2E-06 52.1 2.0 49 448-501 16-64 (235)
56 PRK08116 hypothetical protein; 85.2 0.58 1.2E-05 52.3 2.6 51 450-501 81-133 (268)
57 PRK05642 DNA replication initi 84.9 0.59 1.3E-05 51.0 2.5 52 448-501 13-64 (234)
58 PRK07952 DNA replication prote 84.8 0.52 1.1E-05 52.0 2.1 50 451-501 69-118 (244)
59 PRK14088 dnaA chromosomal repl 84.2 0.47 1E-05 56.6 1.5 51 448-501 99-149 (440)
60 TIGR00362 DnaA chromosomal rep 83.9 0.51 1.1E-05 55.4 1.6 52 448-501 104-155 (405)
61 PRK03992 proteasome-activating 82.9 2.2 4.7E-05 50.2 6.2 18 482-499 165-182 (389)
62 PRK00149 dnaA chromosomal repl 82.6 0.59 1.3E-05 55.7 1.5 52 448-501 116-167 (450)
63 PRK06835 DNA replication prote 82.4 0.62 1.3E-05 53.6 1.5 37 464-501 166-202 (329)
64 TIGR02903 spore_lon_C ATP-depe 82.4 8.3 0.00018 48.2 11.3 27 473-499 166-192 (615)
65 PRK14087 dnaA chromosomal repl 82.1 0.68 1.5E-05 55.5 1.7 50 450-501 111-160 (450)
66 PRK08903 DnaA regulatory inact 81.9 0.98 2.1E-05 48.4 2.7 50 448-501 12-61 (227)
67 TIGR03420 DnaA_homol_Hda DnaA 81.5 1.1 2.3E-05 47.7 2.7 48 449-501 10-57 (226)
68 PTZ00454 26S protease regulato 81.1 7.3 0.00016 46.2 9.7 50 450-499 141-196 (398)
69 PRK09087 hypothetical protein; 80.9 0.76 1.6E-05 50.0 1.4 49 448-501 15-63 (226)
70 COG1484 DnaC DNA replication p 80.4 1.2 2.5E-05 49.5 2.7 49 451-501 76-124 (254)
71 PF04851 ResIII: Type III rest 78.9 0.95 2.1E-05 45.6 1.3 29 473-501 15-44 (184)
72 TIGR02928 orc1/cdc6 family rep 78.8 1.3 2.9E-05 50.6 2.6 40 461-500 18-58 (365)
73 KOG0239 Kinesin (KAR3 subfamil 78.0 0.5 1.1E-05 59.1 -1.2 87 448-553 25-111 (670)
74 COG1474 CDC6 Cdc6-related prot 77.6 1.5 3.2E-05 51.3 2.5 32 468-499 27-59 (366)
75 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.5 28 0.0006 35.0 11.2 72 329-403 60-131 (132)
76 PRK08939 primosomal protein Dn 76.6 1.2 2.5E-05 50.9 1.2 51 451-501 124-175 (306)
77 PRK00411 cdc6 cell division co 76.5 1.8 3.9E-05 50.2 2.8 39 462-500 34-73 (394)
78 PRK08727 hypothetical protein; 75.3 1.8 3.9E-05 47.2 2.2 46 449-501 14-60 (233)
79 cd00009 AAA The AAA+ (ATPases 75.1 1.7 3.8E-05 41.1 1.9 26 475-500 12-37 (151)
80 PRK06526 transposase; Provisio 74.6 1.1 2.5E-05 49.6 0.5 21 479-501 97-117 (254)
81 PF15372 DUF4600: Domain of un 74.6 31 0.00068 34.9 10.4 89 325-413 5-115 (129)
82 PRK08181 transposase; Validate 74.3 2 4.3E-05 48.2 2.3 21 479-501 105-125 (269)
83 smart00053 DYNc Dynamin, GTPas 74.3 3.1 6.6E-05 46.0 3.7 53 580-645 86-138 (240)
84 cd00046 DEXDc DEAD-like helica 74.0 1.1 2.4E-05 42.0 0.2 17 485-501 3-19 (144)
85 PF05673 DUF815: Protein of un 73.3 0.88 1.9E-05 50.4 -0.7 126 451-615 24-155 (249)
86 PF06294 DUF1042: Domain of Un 72.3 5.6 0.00012 41.3 4.9 80 70-160 16-99 (158)
87 PRK10436 hypothetical protein; 72.1 1.7 3.6E-05 52.5 1.1 29 473-501 209-237 (462)
88 PTZ00112 origin recognition co 71.9 1.5 3.2E-05 56.3 0.6 34 467-500 764-799 (1164)
89 PF00270 DEAD: DEAD/DEAH box h 71.2 1.8 4E-05 43.2 1.0 28 472-501 6-33 (169)
90 TIGR02538 type_IV_pilB type IV 71.1 1.8 3.8E-05 53.4 1.1 30 472-501 306-335 (564)
91 KOG0447 Dynamin-like GTP bindi 70.7 30 0.00064 42.4 10.7 38 342-379 226-263 (980)
92 TIGR02533 type_II_gspE general 70.7 2 4.4E-05 52.1 1.4 30 472-501 232-261 (486)
93 PF13245 AAA_19: Part of AAA d 70.4 1.9 4.2E-05 39.2 0.9 27 474-501 3-29 (76)
94 PF13401 AAA_22: AAA domain; P 69.5 1.3 2.8E-05 42.6 -0.5 19 482-500 4-22 (131)
95 PF08581 Tup_N: Tup N-terminal 69.3 98 0.0021 28.8 11.8 44 334-377 31-74 (79)
96 PRK12422 chromosomal replicati 69.0 2.9 6.3E-05 50.2 2.2 52 448-501 105-160 (445)
97 PRK12402 replication factor C 68.6 2.3 4.9E-05 48.0 1.2 43 452-501 13-55 (337)
98 TIGR01420 pilT_fam pilus retra 68.3 2.3 5E-05 49.1 1.2 29 473-501 113-141 (343)
99 PRK06921 hypothetical protein; 68.0 3.4 7.3E-05 46.2 2.4 37 465-501 97-136 (266)
100 smart00382 AAA ATPases associa 67.7 1.7 3.7E-05 40.5 -0.0 19 483-501 3-21 (148)
101 PF01935 DUF87: Domain of unkn 67.4 1.8 3.8E-05 46.5 0.0 17 484-500 25-41 (229)
102 COG0593 DnaA ATPase involved i 66.5 3.1 6.7E-05 49.3 1.8 52 448-501 81-132 (408)
103 cd01131 PilT Pilus retraction 66.5 1.9 4.2E-05 45.7 0.1 18 483-500 2-19 (198)
104 COG1201 Lhr Lhr-like helicases 66.3 8.7 0.00019 49.3 5.7 55 472-541 29-83 (814)
105 COG5008 PilU Tfp pilus assembl 66.1 3.9 8.4E-05 46.0 2.2 34 467-500 110-145 (375)
106 PF12846 AAA_10: AAA-like doma 65.6 2 4.4E-05 46.9 0.0 19 482-500 1-19 (304)
107 TIGR02525 plasmid_TraJ plasmid 65.3 2.9 6.3E-05 49.1 1.2 20 481-500 148-167 (372)
108 PF01637 Arch_ATPase: Archaeal 65.2 2.4 5.2E-05 44.3 0.5 30 471-500 9-38 (234)
109 TIGR02524 dot_icm_DotB Dot/Icm 64.9 3 6.5E-05 48.6 1.3 22 480-501 132-153 (358)
110 PF13191 AAA_16: AAA ATPase do 64.5 1.8 3.9E-05 44.0 -0.6 31 469-499 11-41 (185)
111 cd01129 PulE-GspE PulE/GspE Th 64.5 3.3 7.1E-05 46.2 1.4 30 472-501 70-99 (264)
112 PF13604 AAA_30: AAA domain; P 63.3 3.3 7.2E-05 43.9 1.1 29 472-500 8-36 (196)
113 PF00437 T2SE: Type II/IV secr 62.4 3.1 6.6E-05 45.9 0.7 30 470-500 116-145 (270)
114 PF01695 IstB_IS21: IstB-like 61.5 4.7 0.0001 42.3 1.8 19 483-501 48-66 (178)
115 PF06309 Torsin: Torsin; Inte 61.3 3.5 7.7E-05 41.4 0.8 16 484-499 55-70 (127)
116 KOG3000 Microtubule-binding pr 61.1 21 0.00045 40.8 6.9 103 42-169 16-121 (295)
117 TIGR00635 ruvB Holliday juncti 61.0 5.3 0.00011 44.7 2.2 43 458-500 4-48 (305)
118 COG1222 RPT1 ATP-dependent 26S 61.0 46 0.001 39.2 9.6 47 484-531 187-247 (406)
119 PRK13894 conjugal transfer ATP 60.6 4.6 0.0001 46.4 1.7 28 472-500 139-166 (319)
120 TIGR03015 pepcterm_ATPase puta 60.0 4.9 0.00011 43.8 1.8 25 476-500 37-61 (269)
121 PF00448 SRP54: SRP54-type pro 58.7 3 6.4E-05 44.5 -0.2 17 484-500 3-19 (196)
122 TIGR00631 uvrb excinuclease AB 58.0 11 0.00023 47.7 4.4 93 451-548 2-98 (655)
123 TIGR02782 TrbB_P P-type conjug 58.0 5.5 0.00012 45.3 1.7 28 472-500 123-150 (299)
124 PF13479 AAA_24: AAA domain 57.8 4.2 9.1E-05 43.6 0.7 20 482-501 3-22 (213)
125 KOG0727 26S proteasome regulat 57.5 70 0.0015 36.1 9.9 81 451-531 152-251 (408)
126 PF13207 AAA_17: AAA domain; P 57.1 4.3 9.2E-05 38.7 0.6 16 484-499 1-16 (121)
127 PRK10884 SH3 domain-containing 56.6 40 0.00088 36.6 7.9 32 326-357 91-122 (206)
128 PRK13900 type IV secretion sys 56.1 6 0.00013 45.7 1.7 30 470-500 149-178 (332)
129 PF13086 AAA_11: AAA domain; P 55.7 5 0.00011 41.9 0.8 28 473-501 9-36 (236)
130 PTZ00361 26 proteosome regulat 55.7 99 0.0022 37.4 11.7 16 484-499 219-234 (438)
131 PLN03137 ATP-dependent DNA hel 55.6 42 0.00092 44.8 9.1 27 471-499 466-492 (1195)
132 PRK12723 flagellar biosynthesi 55.6 8.2 0.00018 45.6 2.7 20 482-501 174-193 (388)
133 PF05496 RuvB_N: Holliday junc 54.8 12 0.00026 41.3 3.6 42 457-498 23-66 (233)
134 PRK09183 transposase/IS protei 54.4 6.6 0.00014 43.7 1.6 21 479-501 101-121 (259)
135 TIGR03499 FlhF flagellar biosy 54.3 9.2 0.0002 43.0 2.7 18 484-501 196-213 (282)
136 PRK13833 conjugal transfer pro 54.0 5.8 0.00013 45.8 1.1 28 472-500 135-162 (323)
137 smart00487 DEXDc DEAD-like hel 53.5 7.5 0.00016 38.8 1.7 28 473-501 16-43 (201)
138 COG4962 CpaF Flp pilus assembl 52.9 7.1 0.00015 45.3 1.5 28 471-499 163-190 (355)
139 cd01130 VirB11-like_ATPase Typ 52.5 7.8 0.00017 40.6 1.7 29 471-500 15-43 (186)
140 PF02562 PhoH: PhoH-like prote 52.5 9.4 0.0002 41.3 2.3 25 474-500 13-37 (205)
141 PF00063 Myosin_head: Myosin h 52.1 7.8 0.00017 48.9 1.9 36 464-499 66-102 (689)
142 PF05970 PIF1: PIF1-like helic 51.9 8.5 0.00019 44.8 2.0 37 460-499 3-39 (364)
143 KOG0995 Centromere-associated 51.7 4E+02 0.0086 33.3 15.7 45 42-92 71-120 (581)
144 PF00004 AAA: ATPase family as 51.4 5.9 0.00013 37.8 0.5 16 485-500 1-16 (132)
145 PRK11776 ATP-dependent RNA hel 50.7 8.2 0.00018 46.0 1.7 25 472-498 33-57 (460)
146 KOG0989 Replication factor C, 50.4 11 0.00024 43.2 2.5 20 481-500 56-75 (346)
147 cd00268 DEADc DEAD-box helicas 50.1 9.2 0.0002 39.8 1.8 26 472-499 28-53 (203)
148 PTZ00424 helicase 45; Provisio 50.1 8.2 0.00018 44.8 1.5 27 472-500 57-83 (401)
149 PHA02544 44 clamp loader, smal 49.5 7.7 0.00017 43.6 1.1 23 479-501 39-62 (316)
150 PHA00276 phage lambda Rz-like 49.0 54 0.0012 33.8 6.8 14 404-417 81-94 (144)
151 PRK13342 recombination factor 48.7 8.4 0.00018 45.6 1.4 39 462-500 16-54 (413)
152 TIGR00348 hsdR type I site-spe 48.4 11 0.00024 47.5 2.4 33 468-501 245-282 (667)
153 PF01580 FtsK_SpoIIIE: FtsK/Sp 48.1 5.2 0.00011 42.2 -0.5 18 484-501 40-57 (205)
154 PRK11192 ATP-dependent RNA hel 47.3 9.7 0.00021 45.0 1.6 26 472-499 30-55 (434)
155 KOG1962 B-cell receptor-associ 47.0 77 0.0017 34.8 8.1 22 380-401 189-210 (216)
156 PRK04195 replication factor C 46.7 13 0.00029 44.9 2.6 38 463-500 19-57 (482)
157 PRK06547 hypothetical protein; 46.5 14 0.00031 38.6 2.5 28 472-499 5-32 (172)
158 PF13671 AAA_33: AAA domain; P 46.3 8 0.00017 37.8 0.6 16 484-499 1-16 (143)
159 PF03215 Rad17: Rad17 cell cyc 46.2 11 0.00024 46.3 1.8 32 469-500 30-63 (519)
160 COG1223 Predicted ATPase (AAA+ 46.2 14 0.00029 41.8 2.3 46 484-529 153-211 (368)
161 PF00580 UvrD-helicase: UvrD/R 45.8 7.3 0.00016 42.8 0.2 21 481-501 12-32 (315)
162 PRK13851 type IV secretion sys 45.6 7 0.00015 45.5 0.0 30 471-501 152-181 (344)
163 PF00910 RNA_helicase: RNA hel 45.0 6.1 0.00013 37.7 -0.5 16 485-500 1-16 (107)
164 PRK00080 ruvB Holliday junctio 44.9 14 0.00029 42.3 2.2 40 461-500 28-69 (328)
165 PRK11448 hsdR type I restricti 44.7 13 0.00027 49.8 2.1 28 473-501 425-452 (1123)
166 PF13238 AAA_18: AAA domain; P 44.7 8.3 0.00018 36.6 0.4 15 485-499 1-15 (129)
167 PRK04837 ATP-dependent RNA hel 44.6 11 0.00024 44.5 1.5 26 472-499 37-62 (423)
168 PRK10590 ATP-dependent RNA hel 44.3 12 0.00026 44.7 1.8 26 472-499 30-55 (456)
169 cd01383 MYSc_type_VIII Myosin 44.2 18 0.00039 45.9 3.3 36 464-499 73-109 (677)
170 KOG0335 ATP-dependent RNA heli 44.0 8 0.00017 46.7 0.2 66 474-545 105-189 (482)
171 KOG0926 DEAH-box RNA helicase 43.7 13 0.00029 47.1 2.0 18 482-499 271-288 (1172)
172 KOG4603 TBP-1 interacting prot 43.4 2.8E+02 0.0061 29.6 11.0 19 384-402 162-180 (201)
173 PRK10536 hypothetical protein; 42.8 12 0.00025 42.1 1.2 43 450-501 51-93 (262)
174 PRK13764 ATPase; Provisional 42.7 11 0.00023 47.1 1.0 19 483-501 258-276 (602)
175 cd00124 MYSc Myosin motor doma 42.7 18 0.00038 45.9 2.9 36 464-499 67-103 (679)
176 smart00242 MYSc Myosin. Large 42.5 17 0.00037 46.0 2.7 36 464-499 73-109 (677)
177 PF07728 AAA_5: AAA domain (dy 42.1 7.4 0.00016 38.2 -0.4 16 485-500 2-17 (139)
178 cd01385 MYSc_type_IX Myosin mo 42.0 19 0.00042 45.7 3.1 36 464-499 75-111 (692)
179 cd01381 MYSc_type_VII Myosin m 41.9 21 0.00045 45.3 3.3 36 464-499 67-103 (671)
180 cd01384 MYSc_type_XI Myosin mo 41.8 20 0.00043 45.5 3.1 36 464-499 69-105 (674)
181 PF06414 Zeta_toxin: Zeta toxi 41.2 10 0.00022 40.1 0.4 21 480-500 13-33 (199)
182 cd01378 MYSc_type_I Myosin mot 41.1 21 0.00046 45.2 3.3 36 464-499 67-103 (674)
183 PLN03025 replication factor C 40.9 14 0.00031 42.0 1.6 36 463-501 18-53 (319)
184 PHA00729 NTP-binding motif con 40.6 20 0.00043 39.5 2.5 30 472-501 7-36 (226)
185 PRK13341 recombination factor 40.4 14 0.0003 47.2 1.5 40 462-501 32-71 (725)
186 cd01387 MYSc_type_XV Myosin mo 40.1 23 0.00049 45.0 3.3 36 464-499 68-104 (677)
187 PF07724 AAA_2: AAA domain (Cd 40.0 11 0.00023 39.5 0.4 17 483-499 4-20 (171)
188 PRK11331 5-methylcytosine-spec 39.4 18 0.00038 43.7 2.1 35 697-735 320-356 (459)
189 PF08614 ATG16: Autophagy prot 38.9 1.7E+02 0.0036 31.3 9.2 19 384-402 165-183 (194)
190 cd01380 MYSc_type_V Myosin mot 38.9 22 0.00049 45.1 3.0 36 464-499 67-103 (691)
191 PRK00440 rfc replication facto 38.7 14 0.0003 41.2 1.1 22 479-500 35-56 (319)
192 PRK11889 flhF flagellar biosyn 38.7 20 0.00044 42.8 2.4 18 483-500 242-259 (436)
193 TIGR00614 recQ_fam ATP-depende 38.7 18 0.00038 43.6 2.0 26 472-499 18-43 (470)
194 PRK01297 ATP-dependent RNA hel 38.3 15 0.00033 44.1 1.4 26 472-499 116-141 (475)
195 cd01377 MYSc_type_II Myosin mo 38.3 23 0.0005 45.1 2.9 36 464-499 72-108 (693)
196 TIGR02881 spore_V_K stage V sp 38.2 11 0.00025 41.5 0.2 17 484-500 44-60 (261)
197 cd01382 MYSc_type_VI Myosin mo 37.8 23 0.0005 45.2 2.9 35 465-499 73-108 (717)
198 PF04728 LPP: Lipoprotein leuc 37.7 2.3E+02 0.0049 25.0 7.9 29 337-365 5-33 (56)
199 PRK14722 flhF flagellar biosyn 37.3 12 0.00026 44.1 0.2 19 483-501 138-156 (374)
200 PRK00771 signal recognition pa 37.3 31 0.00066 41.6 3.6 21 481-501 94-114 (437)
201 COG1219 ClpX ATP-dependent pro 37.0 14 0.00031 42.6 0.8 16 483-498 98-113 (408)
202 PRK05703 flhF flagellar biosyn 36.9 22 0.00048 42.5 2.4 18 484-501 223-240 (424)
203 KOG1514 Origin recognition com 36.8 34 0.00073 43.2 3.9 37 465-501 403-441 (767)
204 KOG1853 LIS1-interacting prote 36.8 1.4E+02 0.0029 33.6 8.0 75 326-400 96-180 (333)
205 COG2256 MGS1 ATPase related to 36.2 17 0.00038 43.0 1.3 37 462-498 28-64 (436)
206 PRK10416 signal recognition pa 36.1 27 0.00059 40.2 2.9 18 483-500 115-132 (318)
207 PHA02653 RNA helicase NPH-II; 35.8 26 0.00056 44.5 2.8 25 472-498 171-195 (675)
208 PRK14974 cell division protein 35.7 29 0.00063 40.4 3.0 20 481-500 139-158 (336)
209 KOG2077 JNK/SAPK-associated pr 35.7 72 0.0016 39.3 6.2 43 675-720 630-672 (832)
210 smart00763 AAA_PrkA PrkA AAA d 35.6 20 0.00044 42.0 1.8 46 449-498 44-94 (361)
211 COG2433 Uncharacterized conser 35.5 3.2E+02 0.007 34.3 11.6 24 69-92 57-80 (652)
212 KOG2543 Origin recognition com 35.2 13 0.00028 43.9 0.1 17 484-500 32-48 (438)
213 PRK11664 ATP-dependent RNA hel 34.8 22 0.00049 46.0 2.1 32 466-499 6-37 (812)
214 KOG0742 AAA+-type ATPase [Post 34.7 49 0.0011 39.6 4.6 44 484-529 386-443 (630)
215 PRK06696 uridine kinase; Valid 34.7 33 0.00072 37.0 3.1 34 466-499 6-39 (223)
216 PF00038 Filament: Intermediat 34.6 3.2E+02 0.007 30.8 11.2 12 364-375 259-270 (312)
217 KOG0728 26S proteasome regulat 34.4 2.2E+02 0.0048 32.3 9.2 16 482-497 181-196 (404)
218 PF05729 NACHT: NACHT domain 34.0 15 0.00033 36.3 0.3 17 484-500 2-18 (166)
219 PRK04537 ATP-dependent RNA hel 33.7 21 0.00046 44.2 1.6 26 472-499 38-63 (572)
220 PLN00206 DEAD-box ATP-dependen 33.6 27 0.00059 42.7 2.5 26 472-499 150-175 (518)
221 PF12775 AAA_7: P-loop contain 33.6 18 0.0004 40.6 1.0 28 472-500 24-51 (272)
222 KOG0354 DEAD-box like helicase 33.5 27 0.00058 44.4 2.4 43 454-499 44-93 (746)
223 TIGR01389 recQ ATP-dependent D 33.4 27 0.00059 43.2 2.5 26 472-499 20-45 (591)
224 PF07795 DUF1635: Protein of u 33.4 1.4E+02 0.0031 32.7 7.5 39 344-382 3-41 (214)
225 cd01379 MYSc_type_III Myosin m 33.1 29 0.00063 43.8 2.7 36 464-499 67-103 (653)
226 TIGR00064 ftsY signal recognit 33.1 35 0.00075 38.4 3.0 20 482-501 72-91 (272)
227 PRK11637 AmiB activator; Provi 33.0 3.8E+02 0.0082 32.0 11.9 9 953-961 405-413 (428)
228 TIGR00602 rad24 checkpoint pro 32.7 20 0.00043 45.1 1.1 40 462-501 88-129 (637)
229 PRK10884 SH3 domain-containing 32.6 4.5E+02 0.0097 28.7 11.2 36 334-369 92-127 (206)
230 TIGR02640 gas_vesic_GvpN gas v 32.3 29 0.00062 38.6 2.2 27 471-499 12-38 (262)
231 KOG3631 Alpha-parvin and relat 32.3 1.7E+02 0.0036 33.3 7.8 98 45-163 94-195 (365)
232 PF03961 DUF342: Protein of un 32.2 1.7E+02 0.0036 35.4 8.7 91 324-415 330-422 (451)
233 PHA02244 ATPase-like protein 32.1 36 0.00078 40.3 3.0 24 475-500 114-137 (383)
234 TIGR02788 VirB11 P-type DNA tr 32.1 24 0.00053 40.1 1.7 30 470-500 133-162 (308)
235 PF00735 Septin: Septin; Inte 32.1 18 0.0004 40.8 0.7 20 479-498 1-20 (281)
236 PRK11634 ATP-dependent RNA hel 31.7 29 0.00063 43.7 2.3 26 472-499 35-60 (629)
237 TIGR00376 DNA helicase, putati 31.7 23 0.00051 44.5 1.5 27 474-501 166-192 (637)
238 TIGR01241 FtsH_fam ATP-depende 31.6 24 0.00052 42.8 1.6 51 450-500 51-106 (495)
239 PRK00131 aroK shikimate kinase 31.4 21 0.00045 35.9 0.9 17 483-499 5-21 (175)
240 PRK10865 protein disaggregatio 31.3 31 0.00067 45.0 2.6 44 452-499 566-615 (857)
241 TIGR02902 spore_lonB ATP-depen 31.2 29 0.00063 42.7 2.2 41 452-499 63-103 (531)
242 PRK14723 flhF flagellar biosyn 31.1 32 0.00069 44.2 2.5 18 483-500 186-203 (767)
243 PRK11057 ATP-dependent DNA hel 31.0 30 0.00066 43.1 2.4 26 472-499 32-57 (607)
244 KOG2373 Predicted mitochondria 31.0 40 0.00086 39.5 3.0 29 472-501 261-292 (514)
245 TIGR01618 phage_P_loop phage n 30.9 18 0.0004 39.6 0.4 20 482-501 12-31 (220)
246 cd01386 MYSc_type_XVIII Myosin 30.7 35 0.00077 43.9 2.9 36 464-499 67-103 (767)
247 cd01126 TraG_VirD4 The TraG/Tr 30.5 27 0.00059 40.7 1.7 17 485-501 2-18 (384)
248 PF13851 GAS: Growth-arrest sp 30.0 5.8E+02 0.013 27.7 11.5 19 382-400 112-130 (201)
249 TIGR02237 recomb_radB DNA repa 30.0 27 0.00059 36.8 1.5 25 475-499 2-29 (209)
250 TIGR03819 heli_sec_ATPase heli 29.9 29 0.00063 40.3 1.8 30 470-500 167-196 (340)
251 PRK12724 flagellar biosynthesi 29.5 37 0.0008 40.8 2.6 19 482-500 223-241 (432)
252 PRK10917 ATP-dependent DNA hel 29.5 38 0.00082 43.0 2.8 40 458-500 261-300 (681)
253 PRK11034 clpA ATP-dependent Cl 29.5 38 0.00081 43.6 2.8 37 463-499 463-505 (758)
254 cd01120 RecA-like_NTPases RecA 29.5 22 0.00048 34.7 0.7 17 485-501 2-18 (165)
255 PF15070 GOLGA2L5: Putative go 29.0 3.2E+02 0.0069 34.7 10.5 21 262-282 111-131 (617)
256 PRK09039 hypothetical protein; 28.9 9E+02 0.02 28.3 13.7 27 258-284 38-64 (343)
257 cd01850 CDC_Septin CDC/Septin. 28.9 21 0.00046 40.1 0.5 21 479-499 1-21 (276)
258 PF02456 Adeno_IVa2: Adenoviru 28.9 25 0.00054 40.6 1.0 16 485-500 90-105 (369)
259 PF13173 AAA_14: AAA domain 28.8 19 0.00042 35.2 0.1 17 484-500 4-20 (128)
260 TIGR01359 UMP_CMP_kin_fam UMP- 28.7 23 0.00051 36.3 0.7 14 485-498 2-15 (183)
261 COG1419 FlhF Flagellar GTP-bin 28.7 36 0.00078 40.5 2.3 21 572-592 258-278 (407)
262 PRK06995 flhF flagellar biosyn 28.6 19 0.00042 43.8 0.1 19 483-501 257-275 (484)
263 PRK04328 hypothetical protein; 28.5 36 0.00079 37.5 2.2 26 472-497 10-38 (249)
264 PF13555 AAA_29: P-loop contai 28.4 19 0.00041 31.9 0.0 15 485-499 26-40 (62)
265 cd02021 GntK Gluconate kinase 28.4 23 0.0005 35.2 0.6 15 485-499 2-16 (150)
266 PF05377 FlaC_arch: Flagella a 28.4 2.6E+02 0.0057 24.5 6.8 36 327-362 6-41 (55)
267 CHL00081 chlI Mg-protoporyphyr 28.3 18 0.0004 42.2 -0.2 47 448-501 11-57 (350)
268 cd01123 Rad51_DMC1_radA Rad51_ 28.3 36 0.00078 36.4 2.1 28 472-499 6-36 (235)
269 PRK07261 topology modulation p 28.2 24 0.00052 36.6 0.7 15 485-499 3-17 (171)
270 TIGR01817 nifA Nif-specific re 28.2 31 0.00068 42.2 1.8 45 450-499 192-236 (534)
271 KOG0953 Mitochondrial RNA heli 27.9 26 0.00057 43.0 1.0 42 485-526 194-237 (700)
272 PRK13767 ATP-dependent helicas 27.8 30 0.00066 45.1 1.6 25 473-499 40-64 (876)
273 KOG0976 Rho/Rac1-interacting s 27.8 2E+02 0.0043 37.0 8.2 54 327-380 353-406 (1265)
274 cd01853 Toc34_like Toc34-like 27.6 27 0.00059 38.8 1.0 41 457-499 8-48 (249)
275 PF06048 DUF927: Domain of unk 27.5 41 0.00088 38.0 2.4 28 471-499 183-210 (286)
276 cd01127 TrwB Bacterial conjuga 27.5 20 0.00044 42.5 -0.0 16 484-499 44-59 (410)
277 COG4096 HsdR Type I site-speci 27.5 57 0.0012 42.0 3.8 37 464-501 166-204 (875)
278 PF13476 AAA_23: AAA domain; P 27.1 21 0.00045 36.5 0.0 18 483-500 20-37 (202)
279 PTZ00110 helicase; Provisional 27.1 32 0.00069 42.4 1.5 25 473-499 160-184 (545)
280 PRK13729 conjugal transfer pil 27.0 2E+02 0.0044 35.1 8.0 26 334-359 68-93 (475)
281 TIGR02639 ClpA ATP-dependent C 27.0 42 0.0009 42.9 2.6 37 463-499 459-501 (731)
282 PTZ00014 myosin-A; Provisional 27.0 47 0.001 43.1 3.0 35 465-499 165-200 (821)
283 PF07106 TBPIP: Tat binding pr 26.9 6.8E+02 0.015 25.9 11.1 15 364-378 120-134 (169)
284 TIGR03158 cas3_cyano CRISPR-as 26.8 43 0.00093 39.0 2.5 26 474-499 6-31 (357)
285 PF12004 DUF3498: Domain of un 26.8 21 0.00046 43.5 0.0 28 263-290 387-414 (495)
286 TIGR01069 mutS2 MutS2 family p 26.7 3.8E+02 0.0082 34.9 10.9 17 149-165 266-282 (771)
287 PF10236 DAP3: Mitochondrial r 26.5 41 0.0009 38.5 2.2 24 478-501 19-42 (309)
288 COG1125 OpuBA ABC-type proline 26.5 23 0.00049 40.0 0.1 59 670-736 145-213 (309)
289 PRK06067 flagellar accessory p 26.4 42 0.0009 36.3 2.1 28 472-499 12-42 (234)
290 cd01428 ADK Adenylate kinase ( 26.4 27 0.00059 36.0 0.7 15 485-499 2-16 (194)
291 PLN00020 ribulose bisphosphate 26.3 46 0.00099 39.6 2.5 79 448-526 109-205 (413)
292 PF04111 APG6: Autophagy prote 26.2 7.4E+02 0.016 28.7 12.2 10 493-502 215-224 (314)
293 KOG3859 Septins (P-loop GTPase 26.2 30 0.00065 39.3 1.0 25 475-499 35-59 (406)
294 PRK08118 topology modulation p 26.1 28 0.0006 36.1 0.7 13 485-497 4-16 (167)
295 PRK05580 primosome assembly pr 26.0 39 0.00086 42.8 2.1 37 458-500 144-180 (679)
296 TIGR03817 DECH_helic helicase/ 26.0 41 0.00089 43.2 2.3 26 472-499 43-68 (742)
297 KOG1803 DNA helicase [Replicat 25.7 48 0.0011 41.2 2.7 26 474-500 194-219 (649)
298 PF04156 IncA: IncA protein; 25.6 6.1E+02 0.013 26.5 10.7 7 346-352 134-140 (191)
299 PF15254 CCDC14: Coiled-coil d 25.6 4.3E+02 0.0094 34.2 10.6 11 491-501 638-648 (861)
300 TIGR01313 therm_gnt_kin carboh 25.4 25 0.00053 35.6 0.2 14 485-498 1-14 (163)
301 PRK01172 ski2-like helicase; P 25.4 42 0.00092 42.3 2.3 24 473-498 30-53 (674)
302 KOG0726 26S proteasome regulat 25.4 47 0.001 38.2 2.3 50 484-533 221-283 (440)
303 cd02020 CMPK Cytidine monophos 25.3 30 0.00064 33.8 0.7 15 485-499 2-16 (147)
304 TIGR02322 phosphon_PhnN phosph 25.3 24 0.00052 36.2 0.0 16 484-499 3-18 (179)
305 TIGR03345 VI_ClpV1 type VI sec 25.1 52 0.0011 42.9 3.0 37 463-499 571-613 (852)
306 PRK15455 PrkA family serine pr 25.1 50 0.0011 41.3 2.7 47 449-496 70-117 (644)
307 PRK10867 signal recognition pa 25.1 60 0.0013 39.2 3.3 20 482-501 100-119 (433)
308 cd00464 SK Shikimate kinase (S 25.0 30 0.00065 34.2 0.7 16 484-499 1-16 (154)
309 TIGR02688 conserved hypothetic 24.8 57 0.0012 39.4 3.0 30 470-501 199-228 (449)
310 PRK05342 clpX ATP-dependent pr 24.6 44 0.00096 39.9 2.1 17 483-499 109-125 (412)
311 CHL00176 ftsH cell division pr 24.5 48 0.001 41.9 2.5 47 450-500 179-234 (638)
312 COG0630 VirB11 Type IV secreto 24.3 24 0.00052 40.5 -0.2 18 484-501 145-162 (312)
313 PRK10820 DNA-binding transcrip 24.2 37 0.00081 41.6 1.4 46 449-499 199-244 (520)
314 TIGR02397 dnaX_nterm DNA polym 24.2 48 0.001 37.8 2.2 35 462-499 18-53 (355)
315 KOG0330 ATP-dependent RNA heli 24.1 42 0.00092 39.8 1.7 26 472-499 90-115 (476)
316 PF00931 NB-ARC: NB-ARC domain 24.0 62 0.0013 35.5 3.0 30 470-499 5-36 (287)
317 PRK08233 hypothetical protein; 23.9 32 0.00068 35.1 0.6 16 484-499 5-20 (182)
318 PF10146 zf-C4H2: Zinc finger- 23.9 4.2E+02 0.0091 29.5 9.3 13 366-378 59-71 (230)
319 CHL00181 cbbX CbbX; Provisiona 23.8 31 0.00068 39.0 0.6 16 485-500 62-77 (287)
320 TIGR02746 TraC-F-type type-IV 23.7 26 0.00057 44.9 -0.0 19 482-500 430-448 (797)
321 PRK09361 radB DNA repair and r 23.5 57 0.0012 34.9 2.5 29 472-500 10-41 (225)
322 PRK14963 DNA polymerase III su 23.5 36 0.00078 41.7 1.1 42 452-499 12-53 (504)
323 PF08317 Spc7: Spc7 kinetochor 23.4 4.5E+02 0.0098 30.4 9.9 34 327-360 215-248 (325)
324 PRK12726 flagellar biosynthesi 23.3 29 0.00062 41.3 0.2 18 484-501 208-225 (407)
325 PRK06217 hypothetical protein; 23.2 33 0.00072 35.7 0.6 14 485-498 4-17 (183)
326 KOG2391 Vacuolar sorting prote 23.2 3.8E+02 0.0081 31.5 8.8 56 333-392 223-278 (365)
327 cd01394 radB RadB. The archaea 23.2 51 0.0011 35.0 2.0 28 473-500 7-37 (218)
328 PHA02624 large T antigen; Prov 22.9 59 0.0013 40.9 2.7 30 471-500 418-449 (647)
329 PRK14721 flhF flagellar biosyn 22.8 29 0.00063 41.6 0.1 18 483-500 192-209 (420)
330 TIGR00643 recG ATP-dependent D 22.8 57 0.0012 41.0 2.7 39 458-499 235-273 (630)
331 cd01124 KaiC KaiC is a circadi 22.6 38 0.00082 34.6 0.9 15 485-499 2-16 (187)
332 cd01983 Fer4_NifH The Fer4_Nif 22.5 32 0.00069 30.4 0.3 17 485-501 2-18 (99)
333 PF00158 Sigma54_activat: Sigm 22.5 61 0.0013 33.8 2.4 19 479-497 19-37 (168)
334 PF10186 Atg14: UV radiation r 22.3 9E+02 0.02 26.7 11.8 30 330-359 79-108 (302)
335 PF00485 PRK: Phosphoribulokin 22.3 29 0.00062 36.5 -0.1 15 485-499 2-16 (194)
336 PRK14531 adenylate kinase; Pro 22.2 37 0.0008 35.4 0.7 15 484-498 4-18 (183)
337 PRK06851 hypothetical protein; 22.1 2.9E+02 0.0063 32.8 8.0 28 473-500 205-232 (367)
338 cd02023 UMPK Uridine monophosp 21.9 29 0.00063 36.4 -0.1 15 485-499 2-16 (198)
339 PF07888 CALCOCO1: Calcium bin 21.9 3.7E+02 0.008 33.5 9.0 22 744-765 438-459 (546)
340 PRK14961 DNA polymerase III su 21.9 54 0.0012 38.3 2.0 18 482-499 38-55 (363)
341 cd00820 PEPCK_HprK Phosphoenol 21.7 33 0.00072 33.5 0.3 16 484-499 17-32 (107)
342 PRK00409 recombination and DNA 21.6 4.9E+02 0.011 34.0 10.6 18 149-166 271-288 (782)
343 PRK14729 miaA tRNA delta(2)-is 21.6 42 0.00092 38.5 1.1 14 484-497 6-19 (300)
344 PRK09039 hypothetical protein; 21.6 7.4E+02 0.016 29.0 11.2 12 239-250 35-46 (343)
345 PF02534 T4SS-DNA_transf: Type 21.5 59 0.0013 38.9 2.3 18 483-500 45-62 (469)
346 PRK13729 conjugal transfer pil 21.5 2.9E+02 0.0064 33.8 8.0 36 327-362 68-103 (475)
347 TIGR02880 cbbX_cfxQ probable R 21.4 37 0.0008 38.3 0.6 15 485-499 61-75 (284)
348 COG3883 Uncharacterized protei 21.4 7.7E+02 0.017 28.2 10.7 69 325-397 42-111 (265)
349 TIGR03744 traC_PFL_4706 conjug 21.4 31 0.00066 45.2 -0.1 20 481-500 474-493 (893)
350 TIGR01360 aden_kin_iso1 adenyl 21.3 42 0.00091 34.4 0.9 16 484-499 5-20 (188)
351 PRK14532 adenylate kinase; Pro 21.2 42 0.00091 34.8 0.9 15 484-498 2-16 (188)
352 KOG0729 26S proteasome regulat 21.2 47 0.001 37.7 1.3 45 484-528 213-270 (435)
353 TIGR02173 cyt_kin_arch cytidyl 21.2 41 0.00088 33.9 0.8 16 484-499 2-17 (171)
354 PHA01747 putative ATP-dependen 21.1 51 0.0011 39.1 1.6 31 470-500 178-208 (425)
355 PF10267 Tmemb_cc2: Predicted 21.1 3.9E+02 0.0085 32.1 8.8 38 119-159 29-67 (395)
356 PRK13889 conjugal transfer rel 21.1 46 0.00099 44.1 1.4 28 472-500 353-380 (988)
357 PF07693 KAP_NTPase: KAP famil 21.0 52 0.0011 36.9 1.7 20 480-499 18-37 (325)
358 PRK15429 formate hydrogenlyase 21.0 53 0.0011 41.6 1.9 44 451-499 373-416 (686)
359 PF12325 TMF_TATA_bd: TATA ele 20.9 8.6E+02 0.019 24.4 10.9 10 395-404 100-109 (120)
360 PF10923 DUF2791: P-loop Domai 20.8 70 0.0015 38.4 2.7 34 466-499 33-66 (416)
361 PF10412 TrwB_AAD_bind: Type I 20.7 29 0.00062 40.9 -0.5 17 484-500 17-33 (386)
362 TIGR01425 SRP54_euk signal rec 20.7 82 0.0018 38.0 3.2 20 481-500 99-118 (429)
363 TIGR00231 small_GTP small GTP- 20.7 32 0.00069 32.7 -0.1 16 485-500 4-19 (161)
364 TIGR03689 pup_AAA proteasome A 20.7 35 0.00077 41.9 0.3 16 484-499 218-233 (512)
365 COG5019 CDC3 Septin family pro 20.6 54 0.0012 38.6 1.7 20 479-498 20-39 (373)
366 TIGR01970 DEAH_box_HrpB ATP-de 20.6 64 0.0014 41.9 2.5 28 470-499 7-34 (819)
367 PRK11131 ATP-dependent RNA hel 20.4 69 0.0015 43.5 2.8 32 466-499 75-106 (1294)
368 PF04849 HAP1_N: HAP1 N-termin 20.4 8.9E+02 0.019 28.2 11.1 35 332-366 231-265 (306)
369 PF10234 Cluap1: Clusterin-ass 20.4 6.9E+02 0.015 28.5 10.2 32 347-378 202-236 (267)
370 KOG2264 Exostosin EXT1L [Signa 20.3 5.6E+02 0.012 32.1 9.8 13 404-416 150-164 (907)
371 cd01858 NGP_1 NGP-1. Autoanti 20.3 57 0.0012 32.9 1.6 20 480-499 100-119 (157)
372 smart00489 DEXDc3 DEAD-like he 20.3 58 0.0013 36.9 1.9 38 459-501 9-46 (289)
373 smart00488 DEXDc2 DEAD-like he 20.3 58 0.0013 36.9 1.9 38 459-501 9-46 (289)
374 cd01393 recA_like RecA is a b 20.0 77 0.0017 33.7 2.6 29 472-500 6-37 (226)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.1e-91 Score=837.65 Aligned_cols=422 Identities=48% Similarity=0.710 Sum_probs=394.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHhhhhhhhcCCCCEEEEEE
Q 001666 336 LIELQQRDIVELKQTLHTAKAGMQFLQVKYMEDLDTLGNQLHGLAHAASSYQKVL---EENRKLYNQVQDLKGNIRVYCR 412 (1035)
Q Consensus 336 ~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---~e~r~L~n~~qdlkGnIRV~~R 412 (1035)
.+..++.++++|+..+..++.++..++..+++.+.....++.+|+.+...|.... ++||+|||+++|||||||||||
T Consensus 242 ~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CR 321 (670)
T KOG0239|consen 242 KIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCR 321 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEE
Confidence 3888999999999999999999999999999999999888999998888888777 8999999999999999999999
Q ss_pred eCCCCCCCCC-CCccEEEecC-CcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeecc
Q 001666 413 VRPFLDGQSS-FMSTVEHIEK-GDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQ 490 (1035)
Q Consensus 413 VRP~~~~E~~-~~~~v~~i~~-~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGq 490 (1035)
|||+++++.. ....+...++ +.+.+..|....+...+.|.||+||+|.++|++||.++.|+|+++|||||+|||||||
T Consensus 322 vRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQ 401 (670)
T KOG0239|consen 322 VRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQ 401 (670)
T ss_pred ecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecc
Confidence 9999998876 3444554443 5688888877666556689999999999999999999999999999999999999999
Q ss_pred CCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCcceeeecCCCCCc
Q 001666 491 TGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQNRI 570 (1035)
Q Consensus 491 TGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~Ired~~~gv 570 (1035)
|||||||||.|| +++++|||||++++||..+.....+|.|.+.++|+|||||.|+|||.++....++.|+++.++.+
T Consensus 402 TGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~ 478 (670)
T KOG0239|consen 402 TGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNL 478 (670)
T ss_pred cCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCce
Confidence 999999999997 56789999999999999999888899999999999999999999998875567899999999999
Q ss_pred ccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCcEEEEeeEeeecCCCcccccccc
Q 001666 571 NVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVDLAGSERVDKSEV 650 (1035)
Q Consensus 571 ~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDLAGSER~~ks~a 650 (1035)
+|++++.+.|.+.+|+..+++.|.+||++++|.+|++|||||+||+|+|.+.+...+....|+|+|||||||||++++++
T Consensus 479 ~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~ 558 (670)
T KOG0239|consen 479 MVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGV 558 (670)
T ss_pred ecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHHHHHHHHHHHHhh
Q 001666 651 TGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKFAERVA 730 (1035)
Q Consensus 651 ~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETLsTLrFA~Rak 730 (1035)
+|+|++|+++||+||++||+||.||++++.||||||||||+|||++|||++||+|||+|||...++.||+++|+||+||+
T Consensus 559 tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~ 638 (670)
T KOG0239|consen 559 TGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVR 638 (670)
T ss_pred chhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCChHHHHHHHHHHHHHHHHH
Q 001666 731 TVELGAARVNKDSSDVKELKEQIVSLKAAL 760 (1035)
Q Consensus 731 ~I~~~~~~~n~~~~~i~eLk~eI~~Lk~~L 760 (1035)
.+++|+++.+....+...++..+..++...
T Consensus 639 ~~~lG~a~~~~~~~~~~~~~~~~~~~~~~~ 668 (670)
T KOG0239|consen 639 SVELGSARKQVSTSDDVSLKRFGQLEKLST 668 (670)
T ss_pred ceecccccccccccchhhhhhhhhhhhhhh
Confidence 999999999999888888888777776554
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.8e-85 Score=756.78 Aligned_cols=358 Identities=41% Similarity=0.633 Sum_probs=318.7
Q ss_pred CCCEEEEEEeCCCCCCCCCC--CccEEEe-cCCcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHHhc
Q 001666 404 KGNIRVYCRVRPFLDGQSSF--MSTVEHI-EKGDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLD 479 (1035)
Q Consensus 404 kGnIRV~~RVRP~~~~E~~~--~~~v~~i-~~~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLd 479 (1035)
..+|+|++||||+.+.+... ...+... ..+.+.+..|........+.|+||+||+++++|++||..+ .|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 35899999999998765431 2222222 2345555555443344578899999999999999999996 899999999
Q ss_pred CcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCcc
Q 001666 480 GYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKK 559 (1035)
Q Consensus 480 G~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 559 (1035)
|||+||||||||||||||||.|+. .+..|||||++.+||.++..+.+...|.|+|||+|||||+|+|||.+.. .+.
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~---~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~-~~~ 159 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPD---PELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN-PKG 159 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCC---hhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC-cCC
Confidence 999999999999999999999982 6789999999999999999887777999999999999999999998875 378
Q ss_pred eeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeec-C--CCcEEEEeeEe
Q 001666 560 LEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDL-A--SGTILRGSMHL 636 (1035)
Q Consensus 560 l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~-~--~~~~~~skL~L 636 (1035)
+.|++++..|+||.|++++.|.+++|+..+|..|.++|++++|.||..|||||+||||+|+.... . .....+|+|+|
T Consensus 160 l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnl 239 (574)
T KOG4280|consen 160 LELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNL 239 (574)
T ss_pred ceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999998322 2 22457899999
Q ss_pred eecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CccCCCCcchhhhhhccCCCcceeeEEecCCcccc
Q 001666 637 VDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA-HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEA 715 (1035)
Q Consensus 637 VDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~~-hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~ 715 (1035)
||||||||..+++++|+|++||.+||+||++||+||.||++... ||||||||||+||||||||||||+|||||+|+..+
T Consensus 240 vDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~ 319 (574)
T KOG4280|consen 240 VDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDN 319 (574)
T ss_pred eeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhh
Confidence 99999999999999999999999999999999999999998776 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCcccccCCh--HHHHHHHHHHHHHHHHHhhhcCC
Q 001666 716 LGETISTLKFAERVATVELGAARVNKDS--SDVKELKEQIVSLKAALARKDGD 766 (1035)
Q Consensus 716 ~~ETLsTLrFA~Rak~I~~~~~~~n~~~--~~i~eLk~eI~~Lk~~L~~~~~~ 766 (1035)
++||++||+||+|++.|++. +.+|+++ ..+++|+++|+.||.+|...+..
T Consensus 320 ~~ETlsTLrfA~Rak~I~nk-~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~~ 371 (574)
T KOG4280|consen 320 YEETLSTLRFAQRAKAIKNK-PVINEDPKDALLRELQEEIERLKKELDPGGSP 371 (574)
T ss_pred hHHHHHHHHHHHHHHHhhcc-ccccCCcchhhHHHHHHHHHHHHHhhccccCc
Confidence 99999999999999999864 6778876 46899999999999999876543
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-83 Score=757.44 Aligned_cols=354 Identities=37% Similarity=0.586 Sum_probs=319.9
Q ss_pred CCEEEEEEeCCCCCCCCC-CCccEEEecCCcEEEEcCCCCCCCCCeEEEeceeeCCC-------CchHhHHHhh-HHHHH
Q 001666 405 GNIRVYCRVRPFLDGQSS-FMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPN-------ATQAEVFSDT-RSLIR 475 (1035)
Q Consensus 405 GnIRV~~RVRP~~~~E~~-~~~~v~~i~~~~i~i~~p~~~gk~~~k~F~FD~VF~~~-------atQeeVf~~v-~pLV~ 475 (1035)
.+|+|.||||||+..|.. ...||..+.+++++|..|.... ....|+||+.|+.. ++|..||+++ .++++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k--~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSK--DAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcc--cCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 479999999999999876 4567888888888888875432 34559999999763 7899999997 89999
Q ss_pred HHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhcc-CCCeEEEEEEEEEEEecCeeeecccCC
Q 001666 476 SVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQR-RDTIHYDIFVQMLEIYNEQVRDLLVTD 554 (1035)
Q Consensus 476 svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~-~~~~~~~V~vS~lEIYnE~V~DLL~~~ 554 (1035)
++++|||+||||||||||||||||+|.. .++++|||||++++||..+... .+...|.|.|||+|||||+|+|||+..
T Consensus 82 ~AfEGYN~ClFAYGQTGSGKSYTMMG~~--~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 82 HAFEGYNVCLFAYGQTGSGKSYTMMGFQ--EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHhcccceEEEEeccCCCCcceeeeccC--CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 9999999999999999999999999965 3478999999999999988643 456899999999999999999999965
Q ss_pred CCCcceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCC--C--cEE
Q 001666 555 GLNKKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLAS--G--TIL 630 (1035)
Q Consensus 555 ~~~~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~--~--~~~ 630 (1035)
.....|++|+++-.|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||+|.+.+..... + ...
T Consensus 160 ~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek 239 (1221)
T KOG0245|consen 160 KSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEK 239 (1221)
T ss_pred CCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCccee
Confidence 567889999999999999999999999999999999999999999999999999999999999998876542 2 567
Q ss_pred EEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcC-------CCCccCCCCcchhhhhhccCCCcce
Q 001666 631 RGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQK-------NAHVPYRNSKLTQLLQDSLGGQAKT 703 (1035)
Q Consensus 631 ~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k-------~~hIPYRdSKLT~LLqdsLGGnskT 703 (1035)
+|+|+|||||||||++.+++.|+|||||.+|||||.+||+||+||++. ..+||||||.|||||++.|||||||
T Consensus 240 ~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKT 319 (1221)
T KOG0245|consen 240 VSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKT 319 (1221)
T ss_pred eeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchh
Confidence 899999999999999999999999999999999999999999999852 3489999999999999999999999
Q ss_pred eeEEecCCccccHHHHHHHHHHHHHhhccccCcccccCCh--HHHHHHHHHHHHHHHHHhhh
Q 001666 704 LMFVHISPELEALGETISTLKFAERVATVELGAARVNKDS--SDVKELKEQIVSLKAALARK 763 (1035)
Q Consensus 704 ~mI~~ISP~~~~~~ETLsTLrFA~Rak~I~~~~~~~n~~~--~~i~eLk~eI~~Lk~~L~~~ 763 (1035)
+||++|||+.-||+|||+|||||.||+.|.++ +.+|+++ ..|++|++||.+||..|...
T Consensus 320 aMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~-avVNEdpnaKLIRELreEv~rLksll~~~ 380 (1221)
T KOG0245|consen 320 AMIAALSPADINYEETLSTLRYADRAKQIVNN-AVVNEDPNAKLIRELREEVARLKSLLRAQ 380 (1221)
T ss_pred hhhhccChhhcChHHHHHHHHHhhHhhhhhcc-ceeCCCccHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999865 6788887 45999999999999887543
No 4
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-82 Score=760.05 Aligned_cols=358 Identities=38% Similarity=0.594 Sum_probs=309.6
Q ss_pred CCCEEEEEEeCCCCCCCCCCCccE-EEecC--CcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHh-hHHHHHHHhc
Q 001666 404 KGNIRVYCRVRPFLDGQSSFMSTV-EHIEK--GDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSD-TRSLIRSVLD 479 (1035)
Q Consensus 404 kGnIRV~~RVRP~~~~E~~~~~~v-~~i~~--~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~-v~pLV~svLd 479 (1035)
.-||+|+|||||+++.|....+.+ ...++ ..|.|... -.++.-.+.|+||+||+|.+.|++||+. |.|+|..|+.
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~-~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT-IASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc-cccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 369999999999999887644432 22222 33555543 2233357899999999999999999998 5999999999
Q ss_pred CcceeEEeeccCCCCCceEecCCC----CCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCC
Q 001666 480 GYNVCIFAYGQTGSGKTFTMTGPK----ELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDG 555 (1035)
Q Consensus 480 G~N~~IfAYGqTGSGKTyTM~G~~----~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~ 555 (1035)
|||||||||||||+||||||+|.. ...+...||||||+.+||..++... .+|.|+|||+|+|||.|+|||+++.
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCcc
Confidence 999999999999999999999942 2345778999999999999997654 5899999999999999999999876
Q ss_pred CC-cceeeecCC-----CCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCC--
Q 001666 556 LN-KKLEIRNSS-----QNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASG-- 627 (1035)
Q Consensus 556 ~~-~~l~Ired~-----~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~-- 627 (1035)
.. +.+++..++ .+|+.|.|+.++.|+++.|++.+|.+|...|.+++|.||.+|||||+||+|.|.......+
T Consensus 205 ~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ge 284 (1041)
T KOG0243|consen 205 TSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGE 284 (1041)
T ss_pred ccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcch
Confidence 54 667777665 5899999999999999999999999999999999999999999999999999976543322
Q ss_pred -cEEEEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCcchhhhhhccCCCcceeeE
Q 001666 628 -TILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMF 706 (1035)
Q Consensus 628 -~~~~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI 706 (1035)
-+..|+|+||||||||-++++|+.+.|.+||..||+||.+||+||.||..+..|||||+|||||||||||||.+||+||
T Consensus 285 elvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iI 364 (1041)
T KOG0243|consen 285 ELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCII 364 (1041)
T ss_pred hhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccHHHHHHHHHHHHHhhccccCcccccCCh--HHHHHHHHHHHHHHHHHhhhc
Q 001666 707 VHISPELEALGETISTLKFAERVATVELGAARVNKDS--SDVKELKEQIVSLKAALARKD 764 (1035)
Q Consensus 707 ~~ISP~~~~~~ETLsTLrFA~Rak~I~~~~~~~n~~~--~~i~eLk~eI~~Lk~~L~~~~ 764 (1035)
+||||+..+++||++||.||.||++|+++|-...+-. .-+++|-.+|++||.+|...+
T Consensus 365 ATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 365 ATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAR 424 (1041)
T ss_pred EEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999997654433333 346788888888887775433
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.5e-79 Score=742.94 Aligned_cols=350 Identities=39% Similarity=0.614 Sum_probs=307.4
Q ss_pred CCCEEEEEEeCCCCCCCCCCCccEEEecCCcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHHhcCcc
Q 001666 404 KGNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYN 482 (1035)
Q Consensus 404 kGnIRV~~RVRP~~~~E~~~~~~v~~i~~~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLdG~N 482 (1035)
.++|+|||||||+.+.+.. ..++..+.++.+.+. .+.|.||+||+++++|++||+.+ .|+|+++++|||
T Consensus 97 ds~VkV~VRVRPl~~~E~g-~~iV~~~s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyN 166 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEG-EMIVQKMSNDSLTIN---------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFN 166 (1320)
T ss_pred CCCeEEEEEcCCCCCccCC-CeeEEEcCCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 5799999999999987643 334444555555542 36899999999999999999996 899999999999
Q ss_pred eeEEeeccCCCCCceEecCCCCC------CccchhhHHHHHHHHHHhhhcc-----CCCeEEEEEEEEEEEecCeeeecc
Q 001666 483 VCIFAYGQTGSGKTFTMTGPKEL------TEESLGVNYRALNDLFLISNQR-----RDTIHYDIFVQMLEIYNEQVRDLL 551 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~G~~~~------~~~~~GIipRal~dLF~~~~~~-----~~~~~~~V~vS~lEIYnE~V~DLL 551 (1035)
+||||||||||||||||+|+... ...++||+||++++||..+... ...+.|.|+|||+|||||+|+|||
T Consensus 167 aTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLL 246 (1320)
T PLN03188 167 SSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLL 246 (1320)
T ss_pred ceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecc
Confidence 99999999999999999997531 3467899999999999987542 234689999999999999999999
Q ss_pred cCCCCCcceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecC--C--C
Q 001666 552 VTDGLNKKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA--S--G 627 (1035)
Q Consensus 552 ~~~~~~~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~--~--~ 627 (1035)
.+. .+.+.|+++..++++|.|++++.|.|++|+..+|..|..+|++++|.+|..|||||+||+|+|...... . .
T Consensus 247 sp~--~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~s 324 (1320)
T PLN03188 247 DPS--QKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLS 324 (1320)
T ss_pred ccc--cCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCc
Confidence 875 356899999999999999999999999999999999999999999999999999999999999865432 2 2
Q ss_pred cEEEEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc-----CCCCccCCCCcchhhhhhccCCCcc
Q 001666 628 TILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQ-----KNAHVPYRNSKLTQLLQDSLGGQAK 702 (1035)
Q Consensus 628 ~~~~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~-----k~~hIPYRdSKLT~LLqdsLGGnsk 702 (1035)
....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+. +..|||||+||||+||||+|||||+
T Consensus 325 s~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSK 404 (1320)
T PLN03188 325 SFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAK 404 (1320)
T ss_pred ceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCce
Confidence 35679999999999999999999999999999999999999999999985 4579999999999999999999999
Q ss_pred eeeEEecCCccccHHHHHHHHHHHHHhhccccCcccccCC-hHHHHHHHHHHHHHHHHHhhhcCC
Q 001666 703 TLMFVHISPELEALGETISTLKFAERVATVELGAARVNKD-SSDVKELKEQIVSLKAALARKDGD 766 (1035)
Q Consensus 703 T~mI~~ISP~~~~~~ETLsTLrFA~Rak~I~~~~~~~n~~-~~~i~eLk~eI~~Lk~~L~~~~~~ 766 (1035)
|+|||||||...+++||++||+||+||+.|++.+ .+|.. ..++..|+++|..|+.+|.+.+.+
T Consensus 405 TvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkp-vvNe~~~~~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 405 LAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKA-VVNEVMQDDVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred EEEEEecCCchhhHHHHHHHHHHHHHHhhcCccc-eeccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999765 45544 455777888888888888777655
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.4e-78 Score=680.27 Aligned_cols=320 Identities=38% Similarity=0.640 Sum_probs=291.3
Q ss_pred CEEEEEEeCCCCCCCCC--CCccEEEecCCcEEEEcCCCC---------CCCCCeEEEeceeeCCCCchHhHHHhh-HHH
Q 001666 406 NIRVYCRVRPFLDGQSS--FMSTVEHIEKGDIVITTPSKY---------GKEGRKSFSFNKVFGPNATQAEVFSDT-RSL 473 (1035)
Q Consensus 406 nIRV~~RVRP~~~~E~~--~~~~v~~i~~~~i~i~~p~~~---------gk~~~k~F~FD~VF~~~atQeeVf~~v-~pL 473 (1035)
+|||||||||+.+.|.. ...++...++ .+++..|... .....+.|.||+||+++++|++||+.+ +|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDD-RMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCC-CEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHH
Confidence 69999999999987643 2334444444 4555555432 122468999999999999999999996 799
Q ss_pred HHHHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccC
Q 001666 474 IRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVT 553 (1035)
Q Consensus 474 V~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~ 553 (1035)
|+++++|||+||||||||||||||||+|+. .++||+||++++||..++...+.+.|.|+|||+|||||+|+|||++
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~ 155 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD----SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSP 155 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC----CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCC
Confidence 999999999999999999999999999954 6789999999999999988877889999999999999999999987
Q ss_pred CCCCcceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecC---CCcEE
Q 001666 554 DGLNKKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA---SGTIL 630 (1035)
Q Consensus 554 ~~~~~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~---~~~~~ 630 (1035)
. .+.+.+++++.++++|.|++++.|.+++|++++++.|.++|++++|.+|..|||||+||+|+|.+.+.. .....
T Consensus 156 ~--~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~ 233 (338)
T cd01370 156 S--SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVR 233 (338)
T ss_pred C--CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEE
Confidence 6 567999999999999999999999999999999999999999999999999999999999999988765 55678
Q ss_pred EEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCccCCCCcchhhhhhccCCCcceeeEE
Q 001666 631 RGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN---AHVPYRNSKLTQLLQDSLGGQAKTLMFV 707 (1035)
Q Consensus 631 ~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~---~hIPYRdSKLT~LLqdsLGGnskT~mI~ 707 (1035)
.|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|++++ .|||||+||||+||||+|||||+|+||+
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~ 313 (338)
T cd01370 234 IGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIA 313 (338)
T ss_pred EEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEE
Confidence 8999999999999999999999999999999999999999999999887 8999999999999999999999999999
Q ss_pred ecCCccccHHHHHHHHHHHHHhhcc
Q 001666 708 HISPELEALGETISTLKFAERVATV 732 (1035)
Q Consensus 708 ~ISP~~~~~~ETLsTLrFA~Rak~I 732 (1035)
||||+..+++||++||+||+||++|
T Consensus 314 ~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 314 NISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999876
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.7e-77 Score=673.09 Aligned_cols=320 Identities=41% Similarity=0.614 Sum_probs=284.4
Q ss_pred CCEEEEEEeCCCCCCCCC--CCccEEEecCCcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHHhcCc
Q 001666 405 GNIRVYCRVRPFLDGQSS--FMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGY 481 (1035)
Q Consensus 405 GnIRV~~RVRP~~~~E~~--~~~~v~~i~~~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLdG~ 481 (1035)
.+|||||||||+.+.|.. ...++....+..+++... ..+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~ 74 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGY 74 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 479999999999987753 233444444455544321 257999999999999999999996 89999999999
Q ss_pred ceeEEeeccCCCCCceEecCCCCC----CccchhhHHHHHHHHHHhhhcc----CCCeEEEEEEEEEEEecCeeeecccC
Q 001666 482 NVCIFAYGQTGSGKTFTMTGPKEL----TEESLGVNYRALNDLFLISNQR----RDTIHYDIFVQMLEIYNEQVRDLLVT 553 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~G~~~~----~~~~~GIipRal~dLF~~~~~~----~~~~~~~V~vS~lEIYnE~V~DLL~~ 553 (1035)
|+||||||||||||||||+|+... ...++||+||++++||..+... .....|.|+|||+|||||+|+|||.+
T Consensus 75 n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~ 154 (337)
T cd01373 75 NGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP 154 (337)
T ss_pred ceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC
Confidence 999999999999999999997542 2357899999999999887543 24568999999999999999999976
Q ss_pred CCCCcceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCC--cEEE
Q 001666 554 DGLNKKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASG--TILR 631 (1035)
Q Consensus 554 ~~~~~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~--~~~~ 631 (1035)
. ...+.+++++.++++|.|++++.|.|++|+++++..|.++|.+++|.+|.+|||||+||+|+|.......+ ....
T Consensus 155 ~--~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~ 232 (337)
T cd01373 155 T--SRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRT 232 (337)
T ss_pred C--CCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEE
Confidence 5 35689999999999999999999999999999999999999999999999999999999999987664433 4567
Q ss_pred EeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc----CCCCccCCCCcchhhhhhccCCCcceeeEE
Q 001666 632 GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQ----KNAHVPYRNSKLTQLLQDSLGGQAKTLMFV 707 (1035)
Q Consensus 632 skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~----k~~hIPYRdSKLT~LLqdsLGGnskT~mI~ 707 (1035)
|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||||+|||||+|+|||
T Consensus 233 s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~ 312 (337)
T cd01373 233 SRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIA 312 (337)
T ss_pred EEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999985 468999999999999999999999999999
Q ss_pred ecCCccccHHHHHHHHHHHHHhhcc
Q 001666 708 HISPELEALGETISTLKFAERVATV 732 (1035)
Q Consensus 708 ~ISP~~~~~~ETLsTLrFA~Rak~I 732 (1035)
||||+..+++||++||+||+||+.|
T Consensus 313 ~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 313 NVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999876
No 8
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=8.7e-78 Score=681.68 Aligned_cols=330 Identities=41% Similarity=0.645 Sum_probs=299.2
Q ss_pred CCCEEEEEEeCCCCCCCCCCCc-cEEEec--CCcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHHhc
Q 001666 404 KGNIRVYCRVRPFLDGQSSFMS-TVEHIE--KGDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLD 479 (1035)
Q Consensus 404 kGnIRV~~RVRP~~~~E~~~~~-~v~~i~--~~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLd 479 (1035)
-++|+|+||+||....|....+ -+.+.. +.++.+.. ++ ..+.|.||+||.|+++|++||+.+ .|+|++||.
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~----~~-~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~ 80 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLET----TK-ETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL 80 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEec----cc-ccccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence 4899999999999876643211 222222 34454432 22 238999999999999999999985 899999999
Q ss_pred CcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCcc
Q 001666 480 GYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKK 559 (1035)
Q Consensus 480 G~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 559 (1035)
|||+||||||||||||||||.|... ++...||+||++++||..+........|.|+|||||||+|+|+|||++. +..
T Consensus 81 GYNGTvfaYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~--k~n 157 (607)
T KOG0240|consen 81 GYNGTVFAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE--KTN 157 (607)
T ss_pred ccceeEEEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc--cCC
Confidence 9999999999999999999999765 5567799999999999999998888999999999999999999999876 467
Q ss_pred eeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCcEEEEeeEeeec
Q 001666 560 LEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVDL 639 (1035)
Q Consensus 560 l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDL 639 (1035)
+.+.+|...+++|+|++++.|.++++++++++.|..+|+++.|.||.+|||||+||+|+|.+.+..+.....|+|+||||
T Consensus 158 lsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDL 237 (607)
T KOG0240|consen 158 LSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDL 237 (607)
T ss_pred ceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHH
Q 001666 640 AGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQK-NAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGE 718 (1035)
Q Consensus 640 AGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k-~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~E 718 (1035)
||||+++++++.|.-+.|+.+||+||+|||+||+||+.+ ..|||||||||||||||+|||||+|.+|+|++|+..+..|
T Consensus 238 aGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~E 317 (607)
T KOG0240|consen 238 AGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAE 317 (607)
T ss_pred ccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccc
Confidence 999999999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCcccccCC
Q 001666 719 TISTLKFAERVATVELGAARVNKD 742 (1035)
Q Consensus 719 TLsTLrFA~Rak~I~~~~~~~n~~ 742 (1035)
|.+||+|+.||+.|++ .+.+|.+
T Consensus 318 T~STl~fg~rak~ikN-~v~~n~e 340 (607)
T KOG0240|consen 318 TKSTLRFGNRAKTIKN-TVWVNLE 340 (607)
T ss_pred cccchhhccccccccc-hhhhhhH
Confidence 9999999999999985 4445543
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=4e-76 Score=663.96 Aligned_cols=315 Identities=39% Similarity=0.593 Sum_probs=286.6
Q ss_pred CEEEEEEeCCCCCCCCC--CCccEEEecCCcEEEEcCCCC--------CCCCCeEEEeceeeCCCCchHhHHHhh-HHHH
Q 001666 406 NIRVYCRVRPFLDGQSS--FMSTVEHIEKGDIVITTPSKY--------GKEGRKSFSFNKVFGPNATQAEVFSDT-RSLI 474 (1035)
Q Consensus 406 nIRV~~RVRP~~~~E~~--~~~~v~~i~~~~i~i~~p~~~--------gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV 474 (1035)
+|+|||||||+.+.|.. ...++..++++++++..|... +....+.|.||+||+++++|++||+.+ .|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 69999999999987643 345666677788888776432 123478999999999999999999995 8999
Q ss_pred HHHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCC
Q 001666 475 RSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTD 554 (1035)
Q Consensus 475 ~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~ 554 (1035)
+++++|||+||||||||||||||||+|+ ..++||+||++++||..+.. |.|+|||+|||||+|+|||++.
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~----~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~ 151 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGS----PGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDS 151 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCc
Confidence 9999999999999999999999999995 46889999999999998864 9999999999999999999875
Q ss_pred CC----CcceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecC-----
Q 001666 555 GL----NKKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA----- 625 (1035)
Q Consensus 555 ~~----~~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~----- 625 (1035)
.. .+.+.|++++.++++|.|++++.|.|++|++++|..|.++|.+++|.+|.+|||||+||+|+|......
T Consensus 152 ~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~ 231 (345)
T cd01368 152 PSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDV 231 (345)
T ss_pred cccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccc
Confidence 43 357999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred ---CCcEEEEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc------CCCCccCCCCcchhhhhhc
Q 001666 626 ---SGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQ------KNAHVPYRNSKLTQLLQDS 696 (1035)
Q Consensus 626 ---~~~~~~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~------k~~hIPYRdSKLT~LLqds 696 (1035)
.+....|+|+|||||||||..++++.|++++|+.+||+||++|++||.+|++ +..|||||+||||+||||+
T Consensus 232 ~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~ 311 (345)
T cd01368 232 DQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNY 311 (345)
T ss_pred ccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHh
Confidence 2456789999999999999999999999999999999999999999999986 5789999999999999999
Q ss_pred cCCCcceeeEEecCCccccHHHHHHHHHHHHHhh
Q 001666 697 LGGQAKTLMFVHISPELEALGETISTLKFAERVA 730 (1035)
Q Consensus 697 LGGnskT~mI~~ISP~~~~~~ETLsTLrFA~Rak 730 (1035)
|||||+|+||+||||...+++||++||+||.+|+
T Consensus 312 l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 312 FDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999874
No 10
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-77 Score=712.84 Aligned_cols=355 Identities=40% Similarity=0.615 Sum_probs=305.8
Q ss_pred CCCEEEEEEeCCCCCCCCC--CCccEEEecCCcEEEEcCCC-CCCCCCeEEEeceeeCCCCchHhHHHh-hHHHHHHHhc
Q 001666 404 KGNIRVYCRVRPFLDGQSS--FMSTVEHIEKGDIVITTPSK-YGKEGRKSFSFNKVFGPNATQAEVFSD-TRSLIRSVLD 479 (1035)
Q Consensus 404 kGnIRV~~RVRP~~~~E~~--~~~~v~~i~~~~i~i~~p~~-~gk~~~k~F~FD~VF~~~atQeeVf~~-v~pLV~svLd 479 (1035)
..+|.|+|||||+.+.+.. ..+...++.+..+....... ........|.||+||+++++|++||+. ++|+|.+|+.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 3589999999999887322 12223333444433322111 011115899999999999999999998 6999999999
Q ss_pred CcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCcc
Q 001666 480 GYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKK 559 (1035)
Q Consensus 480 G~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 559 (1035)
|||++|||||||||||||||.| ++.+|||+|+++.+||..+.... ...|.|.|||+|||||.|+|||.+++ ..
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G----~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~--~~ 157 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSG----SEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG--GD 157 (675)
T ss_pred CcccceeeecCCCCCCceEEec----cCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC--CC
Confidence 9999999999999999999999 56789999999999999998776 67999999999999999999999885 34
Q ss_pred eeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCcEEEEeeEeeec
Q 001666 560 LEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVDL 639 (1035)
Q Consensus 560 l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDL 639 (1035)
+.|++|+.+|++|+||++..|.|+++++.+|..|.++|+++.|.+|..|||||+||+|.|......... ..++|+||||
T Consensus 158 L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDL 236 (675)
T KOG0242|consen 158 LRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDL 236 (675)
T ss_pred ceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999987654432 6789999999
Q ss_pred CCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcC--CCCccCCCCcchhhhhhccCCCcceeeEEecCCccccHH
Q 001666 640 AGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQK--NAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALG 717 (1035)
Q Consensus 640 AGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k--~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ 717 (1035)
|||||+.++++.|.|++||.+||+||++||+||.+|+++ ..||||||||||||||++|||||+|+|||||+|+..+++
T Consensus 237 AGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~ 316 (675)
T KOG0242|consen 237 AGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYE 316 (675)
T ss_pred hhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHH
Confidence 999999999999999999999999999999999999976 569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCcccc--cCChHHHHHHHHHHHHHHHHHhhhcCC
Q 001666 718 ETISTLKFAERVATVELGAARV--NKDSSDVKELKEQIVSLKAALARKDGD 766 (1035)
Q Consensus 718 ETLsTLrFA~Rak~I~~~~~~~--n~~~~~i~eLk~eI~~Lk~~L~~~~~~ 766 (1035)
||.+||+||+|++.|++.+... ..+...++.++.++..|+.++......
T Consensus 317 eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~ 367 (675)
T KOG0242|consen 317 ETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKK 367 (675)
T ss_pred HHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999998765332 223344556678888888888664433
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.7e-74 Score=653.15 Aligned_cols=328 Identities=40% Similarity=0.619 Sum_probs=295.6
Q ss_pred CCEEEEEEeCCCCCCCCC-CCccEEEecCCcEEEEcCCCCC--CCCCeEEEeceeeCCC-------CchHhHHHhh-HHH
Q 001666 405 GNIRVYCRVRPFLDGQSS-FMSTVEHIEKGDIVITTPSKYG--KEGRKSFSFNKVFGPN-------ATQAEVFSDT-RSL 473 (1035)
Q Consensus 405 GnIRV~~RVRP~~~~E~~-~~~~v~~i~~~~i~i~~p~~~g--k~~~k~F~FD~VF~~~-------atQeeVf~~v-~pL 473 (1035)
++|+|||||||+...|.. ....+..+.+..+++..|.... ....+.|.||+||+++ ++|++||+.+ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999887654 2334455566888888765311 2246899999999999 9999999995 899
Q ss_pred HHHHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCC-CeEEEEEEEEEEEecCeeeeccc
Q 001666 474 IRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRD-TIHYDIFVQMLEIYNEQVRDLLV 552 (1035)
Q Consensus 474 V~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~ 552 (1035)
|+++++|||+||||||||||||||||+|+. .++||+||++++||..+..... ...|.|+|||+|||||+|+|||+
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~----~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 156 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYK----EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLN 156 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCC
Confidence 999999999999999999999999999954 4789999999999998876554 67899999999999999999998
Q ss_pred CCC-CCcceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecC----CC
Q 001666 553 TDG-LNKKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA----SG 627 (1035)
Q Consensus 553 ~~~-~~~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~----~~ 627 (1035)
+.. ....+.+++++.++++|.|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.... ..
T Consensus 157 ~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~ 236 (356)
T cd01365 157 PKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLT 236 (356)
T ss_pred CCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCC
Confidence 764 4567899999999999999999999999999999999999999999999999999999999999887654 44
Q ss_pred cEEEEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcC--------CCCccCCCCcchhhhhhccCC
Q 001666 628 TILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQK--------NAHVPYRNSKLTQLLQDSLGG 699 (1035)
Q Consensus 628 ~~~~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k--------~~hIPYRdSKLT~LLqdsLGG 699 (1035)
....|+|+|||||||||..+++..|++++|+.+||+||++|++||.+|+.. +.|||||+||||+||||+|||
T Consensus 237 ~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg 316 (356)
T cd01365 237 TEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGG 316 (356)
T ss_pred ceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCC
Confidence 678899999999999999999999999999999999999999999999863 589999999999999999999
Q ss_pred CcceeeEEecCCccccHHHHHHHHHHHHHhhccccCc
Q 001666 700 QAKTLMFVHISPELEALGETISTLKFAERVATVELGA 736 (1035)
Q Consensus 700 nskT~mI~~ISP~~~~~~ETLsTLrFA~Rak~I~~~~ 736 (1035)
+++|+||+||||...+++||++||+||+|+++|++.+
T Consensus 317 ~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~ 353 (356)
T cd01365 317 NSKTAMIATISPADINYEETLSTLRYADRAKKIVNVA 353 (356)
T ss_pred CceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999999999998754
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.1e-74 Score=643.05 Aligned_cols=314 Identities=36% Similarity=0.544 Sum_probs=281.7
Q ss_pred CCEEEEEEeCCCCCCCCCC-CccEEEec-CCcEEEEcCCCC--C--CCCCeEEEeceeeCCCCchHhHHHh-hHHHHHHH
Q 001666 405 GNIRVYCRVRPFLDGQSSF-MSTVEHIE-KGDIVITTPSKY--G--KEGRKSFSFNKVFGPNATQAEVFSD-TRSLIRSV 477 (1035)
Q Consensus 405 GnIRV~~RVRP~~~~E~~~-~~~v~~i~-~~~i~i~~p~~~--g--k~~~k~F~FD~VF~~~atQeeVf~~-v~pLV~sv 477 (1035)
++|+|||||||+.+.|... ...+..+. .+++++..|... + ....+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 4899999999999887532 22333333 346777654321 1 1125789999999999999999998 58999999
Q ss_pred hcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCC
Q 001666 478 LDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLN 557 (1035)
Q Consensus 478 LdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~ 557 (1035)
++|||+||||||||||||||||+|+. .++||+||++++||..++... ..|.|++||+|||||+|+|||++ .
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~---~ 151 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDE----NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND---R 151 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcC----CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC---c
Confidence 99999999999999999999999953 678999999999999987655 58999999999999999999987 4
Q ss_pred cceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCcEEEEeeEee
Q 001666 558 KKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLV 637 (1035)
Q Consensus 558 ~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LV 637 (1035)
+.+.+++++.++++|.|++++.|.|++|+++++..|.++|.+++|.+|..|||||+||+|+|...+. ....|+|+||
T Consensus 152 ~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~v 228 (322)
T cd01367 152 KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFI 228 (322)
T ss_pred cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEe
Confidence 6799999999999999999999999999999999999999999999999999999999999987764 5678999999
Q ss_pred ecCCCccccccc-chhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCcchhhhhhccCCCcceeeEEecCCccccH
Q 001666 638 DLAGSERVDKSE-VTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEAL 716 (1035)
Q Consensus 638 DLAGSER~~ks~-a~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~ 716 (1035)
|||||||...+. ..|++++|+.+||+||++|++||.+|++++.||||||||||+||||+|||||+|+||+||||...++
T Consensus 229 DLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~ 308 (322)
T cd01367 229 DLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSC 308 (322)
T ss_pred ecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhH
Confidence 999999988765 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 001666 717 GETISTLKFAERVA 730 (1035)
Q Consensus 717 ~ETLsTLrFA~Rak 730 (1035)
+||++||+||+|++
T Consensus 309 ~eTl~tL~fa~r~k 322 (322)
T cd01367 309 EHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999985
No 13
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1e-73 Score=638.09 Aligned_cols=313 Identities=39% Similarity=0.589 Sum_probs=286.2
Q ss_pred CEEEEEEeCCCCCCCCCCCccEEEecC-----CcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHh-hHHHHHHHhc
Q 001666 406 NIRVYCRVRPFLDGQSSFMSTVEHIEK-----GDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSD-TRSLIRSVLD 479 (1035)
Q Consensus 406 nIRV~~RVRP~~~~E~~~~~~v~~i~~-----~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~-v~pLV~svLd 479 (1035)
||+|||||||+.+.|.....++...+. ..+.+..|... ...+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~--~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNR--GETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCC--CCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 699999999999888766667666544 35666655322 246899999999999999999999 6999999999
Q ss_pred CcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCcc
Q 001666 480 GYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKK 559 (1035)
Q Consensus 480 G~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 559 (1035)
|||+||||||||||||||||+|+ ..++||+||++++||..++... +.|.|++||+|||||+|+|||.+. ...
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~----~~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--~~~ 150 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGD----PNEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPA--KKE 150 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCC----cCccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCC--CCC
Confidence 99999999999999999999995 4588999999999999876543 689999999999999999999875 456
Q ss_pred eeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCcEEEEeeEeeec
Q 001666 560 LEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVDL 639 (1035)
Q Consensus 560 l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDL 639 (1035)
+.|++++.+++++.|++++.|.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+. .....|+|+||||
T Consensus 151 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDL 228 (319)
T cd01376 151 LPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDL 228 (319)
T ss_pred ceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999999987753 3467899999999
Q ss_pred CCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHHH
Q 001666 640 AGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGET 719 (1035)
Q Consensus 640 AGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ET 719 (1035)
|||||..+++..|.+++|+.+||+||++|++||.+|+.+..|||||+|+||+||+|+|||||+|+||+||||...+++||
T Consensus 229 AGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eT 308 (319)
T cd01376 229 AGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDT 308 (319)
T ss_pred CCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 001666 720 ISTLKFAERVA 730 (1035)
Q Consensus 720 LsTLrFA~Rak 730 (1035)
++||+||+|++
T Consensus 309 l~TL~fa~r~~ 319 (319)
T cd01376 309 LSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHhhC
Confidence 99999999985
No 14
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.2e-75 Score=671.05 Aligned_cols=356 Identities=38% Similarity=0.610 Sum_probs=317.5
Q ss_pred CCCEEEEEEeCCCCCCCCC-CCccEEEecCCcEEEEcCCC-C--CC-CCCeEEEeceeeCCC-------CchHhHHHhh-
Q 001666 404 KGNIRVYCRVRPFLDGQSS-FMSTVEHIEKGDIVITTPSK-Y--GK-EGRKSFSFNKVFGPN-------ATQAEVFSDT- 470 (1035)
Q Consensus 404 kGnIRV~~RVRP~~~~E~~-~~~~v~~i~~~~i~i~~p~~-~--gk-~~~k~F~FD~VF~~~-------atQeeVf~~v- 470 (1035)
..+|||.|||||++.+|.. ...|+..++....++..|.. . +. .++++|.||++|.+. +.|+.||..+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 3689999999999998876 34567777776666665522 1 11 368999999999874 6899999998
Q ss_pred HHHHHHHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhcc-CCCeEEEEEEEEEEEecCeeee
Q 001666 471 RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQR-RDTIHYDIFVQMLEIYNEQVRD 549 (1035)
Q Consensus 471 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~-~~~~~~~V~vS~lEIYnE~V~D 549 (1035)
..+|+++|+|||+||||||||||||||||+| +.+.+|||||.+..||..+... .....|.|.|||+|||||++||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmG----t~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~D 158 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMG----TAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRD 158 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeec----cCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhh
Confidence 6789999999999999999999999999999 6678999999999999988543 4567899999999999999999
Q ss_pred cccCCCCCcceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecC--CC
Q 001666 550 LLVTDGLNKKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA--SG 627 (1035)
Q Consensus 550 LL~~~~~~~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~--~~ 627 (1035)
||.|.+..+.+++++++-.|.+|.||+...|+|++|+..+|..|+++|++++|+||..|||||+||.|.|.+.-.+ ++
T Consensus 159 LLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg 238 (1714)
T KOG0241|consen 159 LLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTG 238 (1714)
T ss_pred hhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876433 33
Q ss_pred c--EEEEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc------CCCCccCCCCcchhhhhhccCC
Q 001666 628 T--ILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQ------KNAHVPYRNSKLTQLLQDSLGG 699 (1035)
Q Consensus 628 ~--~~~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~------k~~hIPYRdSKLT~LLqdsLGG 699 (1035)
. ...|+|.|||||||||+.++++.|+|++|+.+||+||++||.||+||+. ++++||||||.||+||+|+|||
T Consensus 239 ~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGG 318 (1714)
T KOG0241|consen 239 HSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGG 318 (1714)
T ss_pred cchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCC
Confidence 2 3468999999999999999999999999999999999999999999985 3469999999999999999999
Q ss_pred CcceeeEEecCCccccHHHHHHHHHHHHHhhccccCcccccCChH--HHHHHHHHHHHHHHHHhhhc
Q 001666 700 QAKTLMFVHISPELEALGETISTLKFAERVATVELGAARVNKDSS--DVKELKEQIVSLKAALARKD 764 (1035)
Q Consensus 700 nskT~mI~~ISP~~~~~~ETLsTLrFA~Rak~I~~~~~~~n~~~~--~i~eLk~eI~~Lk~~L~~~~ 764 (1035)
||+|+||+||||++++|+|||+|||||.||+.|.+ .+.+|.++. -+++|+++++.|+..|..++
T Consensus 319 NsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN-~avvNedpnarvirElReEve~lr~qL~~ae 384 (1714)
T KOG0241|consen 319 NSRTVMIATVSPAADNYEETLSTLRYADRAKRIVN-HAVVNEDPNARVIRELREEVEKLREQLEQAE 384 (1714)
T ss_pred CceeEEEEEecccccchHHHHHHHHHHHHHHHhhc-cccccCCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999985 466788764 58999999999998887643
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.4e-73 Score=637.28 Aligned_cols=325 Identities=44% Similarity=0.708 Sum_probs=291.3
Q ss_pred CCEEEEEEeCCCCCCCCCC-CccEEEe--cCCcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHh-hHHHHHHHhcC
Q 001666 405 GNIRVYCRVRPFLDGQSSF-MSTVEHI--EKGDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSD-TRSLIRSVLDG 480 (1035)
Q Consensus 405 GnIRV~~RVRP~~~~E~~~-~~~v~~i--~~~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~-v~pLV~svLdG 480 (1035)
.||+|+|||||+.+.|... ...+..+ ..+.+.+..|........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 3899999999999876542 2223333 355666666543333467899999999999999999998 58999999999
Q ss_pred cceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCcce
Q 001666 481 YNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKL 560 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 560 (1035)
||+||||||||||||||||+|+.. ....+||+||++++||..+..... ..|.|.|||+|||||+|+|||.+.. .+.+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~-~~~l 157 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVRE-PPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ-KKKL 157 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCC-cccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC-CCce
Confidence 999999999999999999999654 345899999999999998876554 6899999999999999999998753 4578
Q ss_pred eeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecC---CCcEEEEeeEee
Q 001666 561 EIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA---SGTILRGSMHLV 637 (1035)
Q Consensus 561 ~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~---~~~~~~skL~LV 637 (1035)
.+++++.++++|.|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|+..+.. .+....|+|+||
T Consensus 158 ~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~V 237 (333)
T cd01371 158 ELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLV 237 (333)
T ss_pred eEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987663 445678999999
Q ss_pred ecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CccCCCCcchhhhhhccCCCcceeeEEecCCccccH
Q 001666 638 DLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNA-HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEAL 716 (1035)
Q Consensus 638 DLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~~-hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~ 716 (1035)
|||||||..+++..|.+++|+..||+||.+|++||.+|+.+.. |||||+||||+||+|+|||||+|+||+||+|...++
T Consensus 238 DLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~ 317 (333)
T cd01371 238 DLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNY 317 (333)
T ss_pred ECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccH
Confidence 9999999999999999999999999999999999999998775 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 001666 717 GETISTLKFAERVATV 732 (1035)
Q Consensus 717 ~ETLsTLrFA~Rak~I 732 (1035)
+||++||+||+|++.|
T Consensus 318 ~eTl~TL~fa~r~r~I 333 (333)
T cd01371 318 DETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999999876
No 16
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.4e-73 Score=640.57 Aligned_cols=332 Identities=40% Similarity=0.619 Sum_probs=292.4
Q ss_pred CCEEEEEEeCCCCCCCCCC--CccEEEecC-CcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHh-hHHHHHHHhcC
Q 001666 405 GNIRVYCRVRPFLDGQSSF--MSTVEHIEK-GDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSD-TRSLIRSVLDG 480 (1035)
Q Consensus 405 GnIRV~~RVRP~~~~E~~~--~~~v~~i~~-~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~-v~pLV~svLdG 480 (1035)
+||+|+|||||+.+.|... ..++...++ ..+.+..+ .......+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~-~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTG-GADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCC-CcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 6999999999998877542 233333344 33444332 2223357899999999999999999998 58999999999
Q ss_pred cceeEEeeccCCCCCceEecCCCCC-------CccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccC
Q 001666 481 YNVCIFAYGQTGSGKTFTMTGPKEL-------TEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVT 553 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~G~~~~-------~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~ 553 (1035)
||+||||||||||||||||+|+... ....+||+||++++||..+... ...|.|+|||+|||||+|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997532 1456899999999999998765 568999999999999999999987
Q ss_pred CC-CCcceeeecC--CCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecC---CC
Q 001666 554 DG-LNKKLEIRNS--SQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA---SG 627 (1035)
Q Consensus 554 ~~-~~~~l~Ired--~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~---~~ 627 (1035)
.. ..+++.++++ ..++++|.|++++.|.|++|++.++..|.++|.+++|.+|..|||||+||+|+|...... ..
T Consensus 159 ~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~ 238 (352)
T cd01364 159 ESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEE 238 (352)
T ss_pred ccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCc
Confidence 64 3567999999 589999999999999999999999999999999999999999999999999999876543 23
Q ss_pred cEEEEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCcchhhhhhccCCCcceeeEE
Q 001666 628 TILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFV 707 (1035)
Q Consensus 628 ~~~~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~ 707 (1035)
....|+|+|||||||||..+.++.+.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+
T Consensus 239 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~ 318 (352)
T cd01364 239 LVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIA 318 (352)
T ss_pred cEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccccHHHHHHHHHHHHHhhccccCccccc
Q 001666 708 HISPELEALGETISTLKFAERVATVELGAARVN 740 (1035)
Q Consensus 708 ~ISP~~~~~~ETLsTLrFA~Rak~I~~~~~~~n 740 (1035)
||||...+++||++||+||+|+++|++.+ .+|
T Consensus 319 ~vsp~~~~~~eTl~TL~~a~~~~~i~n~P-~~n 350 (352)
T cd01364 319 TISPASINLEETLSTLEYAHRAKNIKNKP-EVN 350 (352)
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccCcc-ccC
Confidence 99999999999999999999999998765 444
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.9e-73 Score=634.53 Aligned_cols=320 Identities=42% Similarity=0.678 Sum_probs=293.5
Q ss_pred CCEEEEEEeCCCCCCCCC--CCccEEEecCCcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHHhcCc
Q 001666 405 GNIRVYCRVRPFLDGQSS--FMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGY 481 (1035)
Q Consensus 405 GnIRV~~RVRP~~~~E~~--~~~~v~~i~~~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLdG~ 481 (1035)
.+|+|+|||||+.+.|.. ...++...++..+++..+ ...+.|.||+||+++++|++||+.+ .|+|+++++|+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 489999999999887732 344454444556666543 2467999999999999999999995 99999999999
Q ss_pred ceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCccee
Q 001666 482 NVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLE 561 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~ 561 (1035)
|+||||||||||||||||+|+.. ....+||+||++++||..+........|.|++||+|||||+|+|||++. ...+.
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~-~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~ 153 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPG-DPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS--KDNLQ 153 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCC-ccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc--cCCce
Confidence 99999999999999999999654 2457899999999999999887777899999999999999999999876 45689
Q ss_pred eecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCcEEEEeeEeeecCC
Q 001666 562 IRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVDLAG 641 (1035)
Q Consensus 562 Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDLAG 641 (1035)
++++..+++++.|++++.|.|++|+..++..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+||||||
T Consensus 154 i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAG 233 (325)
T cd01369 154 VHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAG 233 (325)
T ss_pred EEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999988888888999999999999
Q ss_pred CcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCC-CCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHHHH
Q 001666 642 SERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN-AHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETI 720 (1035)
Q Consensus 642 SER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~-~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETL 720 (1035)
|||..++++.|.+++|+..||+||++|++||.+|+++. .|||||+||||+||+|+|||+|+|+||+||||...+++||+
T Consensus 234 sE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl 313 (325)
T cd01369 234 SEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETL 313 (325)
T ss_pred CCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHH
Confidence 99999999999999999999999999999999999887 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 001666 721 STLKFAERVATV 732 (1035)
Q Consensus 721 sTLrFA~Rak~I 732 (1035)
+||+||+|+++|
T Consensus 314 ~TL~~a~r~~~i 325 (325)
T cd01369 314 STLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHhhcC
Confidence 999999999876
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.1e-72 Score=631.76 Aligned_cols=324 Identities=56% Similarity=0.878 Sum_probs=295.7
Q ss_pred CCCEEEEEEeCCCCCCCCCCCccEEEe-cC--CcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhhHHHHHHHhcC
Q 001666 404 KGNIRVYCRVRPFLDGQSSFMSTVEHI-EK--GDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDG 480 (1035)
Q Consensus 404 kGnIRV~~RVRP~~~~E~~~~~~v~~i-~~--~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG 480 (1035)
+|+|||+|||||+.+++......+..+ +. ..+.+..+ ....+.|.||+||+++++|++||+.+.|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 699999999999998875433333333 33 33444322 225689999999999999999999999999999999
Q ss_pred cceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCC-CeEEEEEEEEEEEecCeeeecccCCC-CCc
Q 001666 481 YNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRD-TIHYDIFVQMLEIYNEQVRDLLVTDG-LNK 558 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~-~~~ 558 (1035)
+|+||||||+|||||||||+|+ ..++||+||++++||..++...+ ...|.|++||+|||||+|+|||.+.. ...
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~----~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~ 152 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGP----PENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKK 152 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCC----CCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCC
Confidence 9999999999999999999995 36789999999999998877654 67999999999999999999998753 356
Q ss_pred ceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCcEEEEeeEeee
Q 001666 559 KLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVD 638 (1035)
Q Consensus 559 ~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVD 638 (1035)
.++|++++.+++++.|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+|||
T Consensus 153 ~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VD 232 (329)
T cd01366 153 KLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVD 232 (329)
T ss_pred ceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999988878888999999999
Q ss_pred cCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHH
Q 001666 639 LAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGE 718 (1035)
Q Consensus 639 LAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~E 718 (1035)
|||||+..+.++.|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++|
T Consensus 233 LaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~e 312 (329)
T cd01366 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSE 312 (329)
T ss_pred CCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccC
Q 001666 719 TISTLKFAERVATVELG 735 (1035)
Q Consensus 719 TLsTLrFA~Rak~I~~~ 735 (1035)
|++||+||+|+++|++|
T Consensus 313 tl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 313 TLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHHhhcccCC
Confidence 99999999999999864
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.1e-72 Score=630.07 Aligned_cols=314 Identities=40% Similarity=0.646 Sum_probs=286.9
Q ss_pred CEEEEEEeCCCCCCCCCCCccEEEecCC-cEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHHhcCcce
Q 001666 406 NIRVYCRVRPFLDGQSSFMSTVEHIEKG-DIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYNV 483 (1035)
Q Consensus 406 nIRV~~RVRP~~~~E~~~~~~v~~i~~~-~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLdG~N~ 483 (1035)
+|+|+|||||+...|.....++..+.++ .+++..+ ...+.|.||+||+++++|++||+.+ .|+|+++++|+|+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 6999999999998876444455555554 5554432 2468999999999999999999985 8999999999999
Q ss_pred eEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCcceeee
Q 001666 484 CIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIR 563 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~Ir 563 (1035)
||||||||||||||||+|+ ..++||+||++++||..+.... ...|.|+|||+|||||+|+|||.+.. ..++++
T Consensus 76 ~i~ayG~tgSGKT~T~~G~----~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~--~~l~i~ 148 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGD----EQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP--QELRIR 148 (321)
T ss_pred eEEeecCCCCCCceeccCC----CCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC--CCceEE
Confidence 9999999999999999995 4678999999999999887655 45899999999999999999998774 678999
Q ss_pred cCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCC---CcEEEEeeEeeecC
Q 001666 564 NSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLAS---GTILRGSMHLVDLA 640 (1035)
Q Consensus 564 ed~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~---~~~~~skL~LVDLA 640 (1035)
+++.+++++.|++++.|.|++|+..+|..|.++|.+++|.+|.+|||||+||+|+|.+..... +....|+|+|||||
T Consensus 149 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLA 228 (321)
T cd01374 149 EDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLA 228 (321)
T ss_pred ECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999887654 66788999999999
Q ss_pred CCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCC--CCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHH
Q 001666 641 GSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN--AHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGE 718 (1035)
Q Consensus 641 GSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~--~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~E 718 (1035)
||||..+.+ .+.+++|+.+||+||++|++||.+|+.++ .|||||+||||+||+|+|||+++|+||+||||...+++|
T Consensus 229 GsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (321)
T cd01374 229 GSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEE 307 (321)
T ss_pred CCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence 999999998 89999999999999999999999999885 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 001666 719 TISTLKFAERVATV 732 (1035)
Q Consensus 719 TLsTLrFA~Rak~I 732 (1035)
|++||+||+|+++|
T Consensus 308 Tl~TL~~a~r~~~i 321 (321)
T cd01374 308 TLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999875
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.7e-72 Score=632.99 Aligned_cols=320 Identities=40% Similarity=0.649 Sum_probs=288.5
Q ss_pred CEEEEEEeCCCCCCCCCC--CccEEEecCC-cEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHHhcCc
Q 001666 406 NIRVYCRVRPFLDGQSSF--MSTVEHIEKG-DIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGY 481 (1035)
Q Consensus 406 nIRV~~RVRP~~~~E~~~--~~~v~~i~~~-~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLdG~ 481 (1035)
.|+|||||||+.+.|... ..++.....+ .+++ . ..+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-~-------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTV-G-------TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEe-c-------CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999877543 3344333332 3333 1 257899999999999999999995 89999999999
Q ss_pred ceeEEeeccCCCCCceEecCCCC--CCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCC-CCc
Q 001666 482 NVCIFAYGQTGSGKTFTMTGPKE--LTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDG-LNK 558 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~G~~~--~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-~~~ 558 (1035)
|+||||||||||||||||+|+.. ....++||+||++++||..++.......|.|.|||+|||||+|+|||.+.. ...
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 99999999999999999999653 135678999999999999998877778999999999999999999998763 346
Q ss_pred ceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecC----------CCc
Q 001666 559 KLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA----------SGT 628 (1035)
Q Consensus 559 ~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~----------~~~ 628 (1035)
.+.|++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+.. ...
T Consensus 154 ~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd01372 154 PIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNS 233 (341)
T ss_pred CceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCc
Confidence 7999999999999999999999999999999999999999999999999999999999999987763 345
Q ss_pred EEEEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCccCCCCcchhhhhhccCCCcceee
Q 001666 629 ILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN---AHVPYRNSKLTQLLQDSLGGQAKTLM 705 (1035)
Q Consensus 629 ~~~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~---~hIPYRdSKLT~LLqdsLGGnskT~m 705 (1035)
...|+|+|||||||||..++++.|++++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+|||+++|+|
T Consensus 234 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~ 313 (341)
T cd01372 234 TLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLM 313 (341)
T ss_pred eeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEE
Confidence 788999999999999999999999999999999999999999999999876 79999999999999999999999999
Q ss_pred EEecCCccccHHHHHHHHHHHHHhhccc
Q 001666 706 FVHISPELEALGETISTLKFAERVATVE 733 (1035)
Q Consensus 706 I~~ISP~~~~~~ETLsTLrFA~Rak~I~ 733 (1035)
|+||||...+++||++||+||+|+++|+
T Consensus 314 I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 314 IACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999885
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=5.5e-72 Score=627.89 Aligned_cols=319 Identities=44% Similarity=0.649 Sum_probs=283.6
Q ss_pred CEEEEEEeCCCCCCCCCCCccEEEecC-CcEEEEcCCCC------CCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHH
Q 001666 406 NIRVYCRVRPFLDGQSSFMSTVEHIEK-GDIVITTPSKY------GKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSV 477 (1035)
Q Consensus 406 nIRV~~RVRP~~~~E~~~~~~v~~i~~-~~i~i~~p~~~------gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~sv 477 (1035)
.|||+|||||+...+.. .+....+ ..+++..|... .....+.|.||+||++ ++|++||+.+ .|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS---SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCCc---cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 48999999999875443 2333333 34444444221 1224678999999999 9999999996 8999999
Q ss_pred hcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCC--
Q 001666 478 LDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDG-- 555 (1035)
Q Consensus 478 LdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-- 555 (1035)
++|||+||||||||||||||||+|+.. ...++||+||++++||..++... ...|.|++||+|||||+|+|||.+..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTE-SYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCC-cccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccc
Confidence 999999999999999999999999764 34678999999999999987654 45799999999999999999998874
Q ss_pred --CCcceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeee--ecCCCcEEE
Q 001666 556 --LNKKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGR--DLASGTILR 631 (1035)
Q Consensus 556 --~~~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~--~~~~~~~~~ 631 (1035)
..+.+.|++++.++++|.|++++.|.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+. .........
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~ 234 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRL 234 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999987 334556788
Q ss_pred EeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCC-CCccCCCCcchhhhhhccCCCcceeeEEecC
Q 001666 632 GSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN-AHVPYRNSKLTQLLQDSLGGQAKTLMFVHIS 710 (1035)
Q Consensus 632 skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~-~hIPYRdSKLT~LLqdsLGGnskT~mI~~IS 710 (1035)
|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++++ .|||||+||||+||+|+|||+|+|+||+|||
T Consensus 235 s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vs 314 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIW 314 (334)
T ss_pred EEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 999999999999999999999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHHHHhh
Q 001666 711 PELEALGETISTLKFAERVA 730 (1035)
Q Consensus 711 P~~~~~~ETLsTLrFA~Rak 730 (1035)
|...+++||++||+||+|++
T Consensus 315 p~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 315 VEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999984
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=8.9e-69 Score=598.78 Aligned_cols=321 Identities=48% Similarity=0.745 Sum_probs=292.3
Q ss_pred CEEEEEEeCCCCCCCCCCCccEEEecC-CcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHHhcCcce
Q 001666 406 NIRVYCRVRPFLDGQSSFMSTVEHIEK-GDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYNV 483 (1035)
Q Consensus 406 nIRV~~RVRP~~~~E~~~~~~v~~i~~-~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLdG~N~ 483 (1035)
+|+|||||||+...+......+..+.+ +.+++..|........+.|.||+||+++++|++||+.+ .|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999998776433334444444 77887766433333578999999999999999999995 7999999999999
Q ss_pred eEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCC-CeEEEEEEEEEEEecCeeeecccCCCCCcceee
Q 001666 484 CIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRD-TIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEI 562 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~I 562 (1035)
||||||||||||||||+|+ ..++||+||++++||..+..... ...|.|++||+|||+|+|+|||.+......+.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~----~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i 156 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGS----PKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL 156 (328)
T ss_pred eEEEecCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEE
Confidence 9999999999999999994 46789999999999999876653 568999999999999999999988755678999
Q ss_pred ecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCc--EEEEeeEeeecC
Q 001666 563 RNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGT--ILRGSMHLVDLA 640 (1035)
Q Consensus 563 red~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~--~~~skL~LVDLA 640 (1035)
++++.+++++.|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|...+..... ...|+|+|||||
T Consensus 157 ~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLa 236 (328)
T cd00106 157 REDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLA 236 (328)
T ss_pred EEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998876655 889999999999
Q ss_pred CCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCC--CCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHH
Q 001666 641 GSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKN--AHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGE 718 (1035)
Q Consensus 641 GSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~--~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~E 718 (1035)
|+|+..+.+..+.+++|+..||+||++|++||.+|+.++ .|||||+||||+||||+|||+++|+||+||+|...+++|
T Consensus 237 Gse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~e 316 (328)
T cd00106 237 GSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDE 316 (328)
T ss_pred CCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHH
Confidence 999999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 001666 719 TISTLKFAERVA 730 (1035)
Q Consensus 719 TLsTLrFA~Rak 730 (1035)
|++||+||+|++
T Consensus 317 Tl~tL~~a~r~~ 328 (328)
T cd00106 317 TLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.8e-68 Score=598.58 Aligned_cols=324 Identities=49% Similarity=0.748 Sum_probs=293.1
Q ss_pred CEEEEEEeCCCCCCCCC--CCccEEEecCC--cEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHHhcC
Q 001666 406 NIRVYCRVRPFLDGQSS--FMSTVEHIEKG--DIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDG 480 (1035)
Q Consensus 406 nIRV~~RVRP~~~~E~~--~~~~v~~i~~~--~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLdG 480 (1035)
+|+|+|||||+...|.. ...++...+.. .+++..+. .....+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK--NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC--CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 69999999999887754 23333333332 55555432 223578999999999999999999995 8999999999
Q ss_pred cceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCcce
Q 001666 481 YNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKL 560 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 560 (1035)
+|+||||||+|||||||||+|+ ..++||+||++++||..+....+...|.|+|||+|||+|+|+|||.+. .+.+
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~----~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~--~~~l 152 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGT----PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS--PKKL 152 (335)
T ss_pred CceeEEEeCCCCCCCceEecCC----CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--CCCc
Confidence 9999999999999999999995 457899999999999999777767799999999999999999999876 5679
Q ss_pred eeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeee--ecCCCcEEEEeeEeee
Q 001666 561 EIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGR--DLASGTILRGSMHLVD 638 (1035)
Q Consensus 561 ~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~--~~~~~~~~~skL~LVD 638 (1035)
.+++++.+++++.|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|.+. +...+....|+|+|||
T Consensus 153 ~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VD 232 (335)
T smart00129 153 EIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVD 232 (335)
T ss_pred EEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999966 4556678899999999
Q ss_pred cCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc--CCCCccCCCCcchhhhhhccCCCcceeeEEecCCccccH
Q 001666 639 LAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQ--KNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEAL 716 (1035)
Q Consensus 639 LAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~--k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~ 716 (1035)
|||+||..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||..+++
T Consensus 233 LaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~ 312 (335)
T smart00129 233 LAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNL 312 (335)
T ss_pred CCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccch
Confidence 999999999999999999999999999999999999998 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCcc
Q 001666 717 GETISTLKFAERVATVELGAA 737 (1035)
Q Consensus 717 ~ETLsTLrFA~Rak~I~~~~~ 737 (1035)
+||++||+||+++++|++++.
T Consensus 313 ~eTl~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 313 EETLSTLRFASRAKEIKNKAI 333 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999997764
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.9e-68 Score=595.21 Aligned_cols=319 Identities=45% Similarity=0.686 Sum_probs=277.0
Q ss_pred EeCCCCCCCCCCCc--cEEEec-CCcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHHhcCcceeEEe
Q 001666 412 RVRPFLDGQSSFMS--TVEHIE-KGDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLDGYNVCIFA 487 (1035)
Q Consensus 412 RVRP~~~~E~~~~~--~v~~i~-~~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLdG~N~~IfA 487 (1035)
||||+.+.|..... .+.... .................+.|.||+||+++++|++||+.+ .|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999887654222 222111 111111111111223578999999999999999999995 99999999999999999
Q ss_pred eccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCC--eEEEEEEEEEEEecCeeeecccCCC--CCcceeee
Q 001666 488 YGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDT--IHYDIFVQMLEIYNEQVRDLLVTDG--LNKKLEIR 563 (1035)
Q Consensus 488 YGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~--~~~~V~vS~lEIYnE~V~DLL~~~~--~~~~l~Ir 563 (1035)
||+|||||||||+|+ ....++||+||++++||..++..... ..|.|+|||+|||||+|+|||.+.. ..+.+.|+
T Consensus 81 yG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred ecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 999999999999996 13568899999999999999877664 7999999999999999999999873 34679999
Q ss_pred cCCCCC-cccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCc----EEEEeeEeee
Q 001666 564 NSSQNR-INVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGT----ILRGSMHLVD 638 (1035)
Q Consensus 564 ed~~~g-v~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~----~~~skL~LVD 638 (1035)
+++..| ++|.|++++.|.+++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+.+..... ...|+|+|||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 999876 99999999999999999999999999999999999999999999999999998877654 4789999999
Q ss_pred cCCCcccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcC--CCCccCCCCcchhhhhhccCCCcceeeEEecCCcccc
Q 001666 639 LAGSERVDKSEV-TGDRLKEAQHINKSLSALGDVIASLAQK--NAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEA 715 (1035)
Q Consensus 639 LAGSER~~ks~a-~G~rlkEa~~INkSLsaLg~VI~ALa~k--~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~ 715 (1035)
|||+||..+..+ .+.+++|+..||+||.+|++||.+|+++ ..|||||+||||+||+|+|||||+|+||+||||...+
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 999999999886 4889999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 001666 716 LGETISTLKFAERVATV 732 (1035)
Q Consensus 716 ~~ETLsTLrFA~Rak~I 732 (1035)
++||++||+||+++++|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999976
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-65 Score=587.36 Aligned_cols=330 Identities=40% Similarity=0.628 Sum_probs=293.4
Q ss_pred cCCCCEEEEEEeCCCCCCCCCCCccEEEecCCcEEEEcCCC-------CCCCCCeEEEeceeeCCCCchHhHHHhh-HHH
Q 001666 402 DLKGNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSK-------YGKEGRKSFSFNKVFGPNATQAEVFSDT-RSL 473 (1035)
Q Consensus 402 dlkGnIRV~~RVRP~~~~E~~~~~~v~~i~~~~i~i~~p~~-------~gk~~~k~F~FD~VF~~~atQeeVf~~v-~pL 473 (1035)
+.+..|.|||||||+.+ ......|+..+++.++++..|.. .+....+.|.|.+||+|+++|.+||+.+ .|+
T Consensus 28 ~~~d~v~v~~rvrP~~~-~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~pl 106 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD-ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPL 106 (809)
T ss_pred hhhcchheeEeecCCCC-CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHH
Confidence 56778999999999886 33346788889999999987742 2333468999999999999999999985 899
Q ss_pred HHHHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhcc--------------------------
Q 001666 474 IRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQR-------------------------- 527 (1035)
Q Consensus 474 V~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~-------------------------- 527 (1035)
|.+++.|.|..||+||.|||||||||+| ++..+||+||+++-||..+..+
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G----~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~ 182 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTG----TPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQ 182 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeec----CCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 4567899999999999643210
Q ss_pred --------------------------------------CCCeEEEEEEEEEEEecCeeeecccCCCCCc----ceeeecC
Q 001666 528 --------------------------------------RDTIHYDIFVQMLEIYNEQVRDLLVTDGLNK----KLEIRNS 565 (1035)
Q Consensus 528 --------------------------------------~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~----~l~Ired 565 (1035)
...+.|.|+|||+|||||.|||||.+.+... ...+++|
T Consensus 183 lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d 262 (809)
T KOG0247|consen 183 LKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLRED 262 (809)
T ss_pred hhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhc
Confidence 0234689999999999999999998764332 2567899
Q ss_pred CCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecC--CCcEEEEeeEeeecCCCc
Q 001666 566 SQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA--SGTILRGSMHLVDLAGSE 643 (1035)
Q Consensus 566 ~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~--~~~~~~skL~LVDLAGSE 643 (1035)
.++..+|.|+++|.|++.+|++.++..|.++|++++|.+|..|||||+||+|.+-+.... ++....|.|.||||||||
T Consensus 263 ~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSE 342 (809)
T KOG0247|consen 263 TNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSE 342 (809)
T ss_pred cCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999999876554 677889999999999999
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcC-----CCCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHH
Q 001666 644 RVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQK-----NAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGE 718 (1035)
Q Consensus 644 R~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k-----~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~E 718 (1035)
|..+++++|.||+||.+||.||.+||+||.+|.++ +.+|||||||||++++.+|.|..+.+||+||+|..++|+|
T Consensus 343 Rt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 343 RTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred hcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 99999999999999999999999999999999753 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCc
Q 001666 719 TISTLKFAERVATVELGA 736 (1035)
Q Consensus 719 TLsTLrFA~Rak~I~~~~ 736 (1035)
+++.|+||+-+..|.+..
T Consensus 423 nl~vlkFaeiaq~v~v~~ 440 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVAR 440 (809)
T ss_pred HHHHHHHHHhcccccccC
Confidence 999999999998886543
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-64 Score=568.27 Aligned_cols=326 Identities=33% Similarity=0.501 Sum_probs=283.6
Q ss_pred CCEEEEEEeCCCCCCCCCC-CccEEEe-cCCcEEEEcCCCCC----CCCCeEEEeceeeCCCCchHhHHHhh-HHHHHHH
Q 001666 405 GNIRVYCRVRPFLDGQSSF-MSTVEHI-EKGDIVITTPSKYG----KEGRKSFSFNKVFGPNATQAEVFSDT-RSLIRSV 477 (1035)
Q Consensus 405 GnIRV~~RVRP~~~~E~~~-~~~v~~i-~~~~i~i~~p~~~g----k~~~k~F~FD~VF~~~atQeeVf~~v-~pLV~sv 477 (1035)
-.|.|+||-||++..|... ...|..+ .++.+++..|...- .-..+.|.||++||+.++++.||..+ +|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 4699999999999887652 2223334 44555555442110 11357899999999999999999985 8999999
Q ss_pred hcCcceeEEeeccCCCCCceEecCCCCC--CccchhhHHHHHHHHHHhhhc-cCCCeEEEEEEEEEEEecCeeeecccCC
Q 001666 478 LDGYNVCIFAYGQTGSGKTFTMTGPKEL--TEESLGVNYRALNDLFLISNQ-RRDTIHYDIFVQMLEIYNEQVRDLLVTD 554 (1035)
Q Consensus 478 LdG~N~~IfAYGqTGSGKTyTM~G~~~~--~~~~~GIipRal~dLF~~~~~-~~~~~~~~V~vS~lEIYnE~V~DLL~~~ 554 (1035)
|+|--+|+||||||||||||||.|.... .....||..++.+|+|..+.. ......+.|+|+|||||+.+|||||..
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~- 366 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND- 366 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-
Confidence 9999999999999999999999886542 233569999999999998876 334568999999999999999999976
Q ss_pred CCCcceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCcEEEEee
Q 001666 555 GLNKKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSM 634 (1035)
Q Consensus 555 ~~~~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL 634 (1035)
.++|.+.+|....+.|.||++..|.+.+||+.+++.|+..|+.+.|..|..|||||+||+|.+... .+....|++
T Consensus 367 --k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~---~~~k~hGKf 441 (676)
T KOG0246|consen 367 --KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH---GEFKLHGKF 441 (676)
T ss_pred --ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC---CcceeEeEE
Confidence 478999999999999999999999999999999999999999999999999999999999998643 235789999
Q ss_pred EeeecCCCccc-ccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCcchhhhhhccCC-CcceeeEEecCCc
Q 001666 635 HLVDLAGSERV-DKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLGG-QAKTLMFVHISPE 712 (1035)
Q Consensus 635 ~LVDLAGSER~-~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGG-nskT~mI~~ISP~ 712 (1035)
.||||||+||. +.+.+..+...||+.|||||+||..||.||.+.+.|+|||.||||++|+|||=| |++|+||+||||.
T Consensus 442 SlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg 521 (676)
T KOG0246|consen 442 SLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPG 521 (676)
T ss_pred EEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCC
Confidence 99999999994 566778888999999999999999999999999999999999999999999977 9999999999999
Q ss_pred cccHHHHHHHHHHHHHhhccccCc
Q 001666 713 LEALGETISTLKFAERVATVELGA 736 (1035)
Q Consensus 713 ~~~~~ETLsTLrFA~Rak~I~~~~ 736 (1035)
..+.+.||+|||||.||+......
T Consensus 522 ~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 522 ISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred cchhhhhHHHHHHHHHHHhhcCCC
Confidence 999999999999999999886543
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-63 Score=591.01 Aligned_cols=341 Identities=38% Similarity=0.582 Sum_probs=297.9
Q ss_pred eCCCCCCCCC--CCccEEEecC-CcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHh-hHHHHHHHhcCcceeEEee
Q 001666 413 VRPFLDGQSS--FMSTVEHIEK-GDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSD-TRSLIRSVLDGYNVCIFAY 488 (1035)
Q Consensus 413 VRP~~~~E~~--~~~~v~~i~~-~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~-v~pLV~svLdG~N~~IfAY 488 (1035)
|||+...+.. ...|+...+. ..+++. +..+|+||+||+....|.++|+. |.|+++.+++|||++++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig--------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG--------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec--------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 6887765543 2334442222 222221 46789999999999999999998 5999999999999999999
Q ss_pred ccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCcceeeecCCCC
Q 001666 489 GQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLEIRNSSQN 568 (1035)
Q Consensus 489 GqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~Ired~~~ 568 (1035)
|||||||||||.+.........|+|||+++.+|..+..... ..|.|.|+|+|||+|.|+|||.++.....+.+++ +.+
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g 150 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKG 150 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCC
Confidence 99999999999887543444479999999999998876544 7899999999999999999998766555677777 778
Q ss_pred CcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeee-cCCCcEEEEeeEeeecCCCccccc
Q 001666 569 RINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRD-LASGTILRGSMHLVDLAGSERVDK 647 (1035)
Q Consensus 569 gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~-~~~~~~~~skL~LVDLAGSER~~k 647 (1035)
++.+.|++++.|.+..++...+..|.-.|++++|+||..|||||+||||.+.+.. .......+++|||||||||||.++
T Consensus 151 ~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kk 230 (913)
T KOG0244|consen 151 EITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKK 230 (913)
T ss_pred ceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccc
Confidence 8999999999999999999999999999999999999999999999999998743 344456789999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhcCC--CCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHHHHHHHHH
Q 001666 648 SEVTGDRLKEAQHINKSLSALGDVIASLAQKN--AHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETISTLKF 725 (1035)
Q Consensus 648 s~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~--~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETLsTLrF 725 (1035)
++++|+|++|+.+||.+|++||+||+||.... .|||||+|||||||||+||||+.|+||+||||+..+++||++||+|
T Consensus 231 T~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~y 310 (913)
T KOG0244|consen 231 TKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRY 310 (913)
T ss_pred cccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHH
Confidence 99999999999999999999999999998655 4999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCcccccCCh--HHHHHHHHHHHHHHHHHhhhc
Q 001666 726 AERVATVELGAARVNKDS--SDVKELKEQIVSLKAALARKD 764 (1035)
Q Consensus 726 A~Rak~I~~~~~~~n~~~--~~i~eLk~eI~~Lk~~L~~~~ 764 (1035)
|.|++.|++.+ .+|.++ .++..||.||+.|+.+|..+.
T Consensus 311 a~Rak~iknk~-vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 311 ADRAKQIKNKP-VVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred hhHHHHhcccc-cccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999755 456564 678999999999999998775
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.9e-59 Score=551.70 Aligned_cols=344 Identities=40% Similarity=0.610 Sum_probs=296.7
Q ss_pred CCCCEEEEEEeCCCCCCCCCCCccEEEecCCcEEEEcCCCCCCCCCeEEEeceeeCCCCchHhHHHh-hHHHHHHHhcCc
Q 001666 403 LKGNIRVYCRVRPFLDGQSSFMSTVEHIEKGDIVITTPSKYGKEGRKSFSFNKVFGPNATQAEVFSD-TRSLIRSVLDGY 481 (1035)
Q Consensus 403 lkGnIRV~~RVRP~~~~E~~~~~~v~~i~~~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQeeVf~~-v~pLV~svLdG~ 481 (1035)
.-.+++++++..|-..++ .+....+...+-. .......|.||+||++.++|++||+. +.|+++++++||
T Consensus 20 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~ 89 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE-----RLINTSKKSHVSL-----EKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGY 89 (568)
T ss_pred eecCceEEEeecCCCcch-----heeeccccccccc-----ccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcc
Confidence 346788888888854443 1111111111110 01115789999999999999999998 589999999999
Q ss_pred ceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecCeeeecccCCCCCccee
Q 001666 482 NVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNEQVRDLLVTDGLNKKLE 561 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~ 561 (1035)
|+||||||||||||||||.| ....+||||+++.+||..+........|.|.|||+|||||+++|||.+.... +.
T Consensus 90 N~TvfayGqTgsgKtyt~~G----~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--~~ 163 (568)
T COG5059 90 NCTVFAYGQTGSGKTYTMSG----TEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES--LN 163 (568)
T ss_pred cceEEEEcccCCCceeEeec----CccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc--cc
Confidence 99999999999999999999 4578999999999999998877767789999999999999999999876432 67
Q ss_pred eecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCcEEEEeeEeeecCC
Q 001666 562 IRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVDLAG 641 (1035)
Q Consensus 562 Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDLAG 641 (1035)
++++...++.|.+++.+.|.+.+|++.++..|..+|.+++|.+|..|||||+||++++.+.+...+....++|+||||||
T Consensus 164 ~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLag 243 (568)
T COG5059 164 IREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAG 243 (568)
T ss_pred ccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeecc
Confidence 89999999999999999999999999999999999999999999999999999999999988777777778999999999
Q ss_pred CcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc--CCCCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHHH
Q 001666 642 SERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQ--KNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGET 719 (1035)
Q Consensus 642 SER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~--k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ET 719 (1035)
||++..++..+.|++|+..||+||.+||+||.+|.. +..|||||+||||||||++|||+++|.|||||+|...+++||
T Consensus 244 SE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et 323 (568)
T COG5059 244 SERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEET 323 (568)
T ss_pred ccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHH
Confidence 999999999999999999999999999999999997 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCccccc---CChHHHHHHHHHHHHHHHHHhhh
Q 001666 720 ISTLKFAERVATVELGAARVN---KDSSDVKELKEQIVSLKAALARK 763 (1035)
Q Consensus 720 LsTLrFA~Rak~I~~~~~~~n---~~~~~i~eLk~eI~~Lk~~L~~~ 763 (1035)
++||+||.|++.|++. +..+ .....+.+++.++...+......
T Consensus 324 ~~tL~~a~rak~I~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 369 (568)
T COG5059 324 INTLKFASRAKSIKNK-IQVNSSSDSSREIEEIKFDLSEDRSEIEIL 369 (568)
T ss_pred HHHHHHHHHHhhcCCc-ccccCcCcchHHHHHHHhhhhhhhhhhhhH
Confidence 9999999999999854 3333 23456666666666666554433
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=3.5e-49 Score=409.16 Aligned_cols=176 Identities=57% Similarity=0.910 Sum_probs=167.8
Q ss_pred HHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEEEecC
Q 001666 466 VFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLEIYNE 545 (1035)
Q Consensus 466 Vf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lEIYnE 545 (1035)
||+.+.|+|+.+++|||+||||||||||||||||+|+. .+.||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHH--------------------------
Confidence 99997799999999999999999999999999999954 678999999987
Q ss_pred eeeecccCCCCCcceeeecCCCCCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecC
Q 001666 546 QVRDLLVTDGLNKKLEIRNSSQNRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLA 625 (1035)
Q Consensus 546 ~V~DLL~~~~~~~~l~Ired~~~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~ 625 (1035)
+++++..|.++|.+++|.+|+.|||||+||+|+|.+.+..
T Consensus 58 ----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~ 97 (186)
T cd01363 58 ----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNAL 97 (186)
T ss_pred ----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecC
Confidence 7889999999999999999999999999999999987765
Q ss_pred C---CcEEEEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCcchhhhhhccCCCcc
Q 001666 626 S---GTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDSLGGQAK 702 (1035)
Q Consensus 626 ~---~~~~~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnsk 702 (1035)
. +....++|+|||||||||.++++..+++++|+..||+||++|++||.+|++++.|||||+||||+||||+|||||+
T Consensus 98 ~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~ 177 (186)
T cd01363 98 ASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSR 177 (186)
T ss_pred CCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCe
Confidence 4 5677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecCC
Q 001666 703 TLMFVHISP 711 (1035)
Q Consensus 703 T~mI~~ISP 711 (1035)
|+||+||||
T Consensus 178 t~~i~~vsP 186 (186)
T cd01363 178 TLMVACISP 186 (186)
T ss_pred EEEEEEeCc
Confidence 999999998
No 30
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=99.89 E-value=5.5e-23 Score=210.97 Aligned_cols=119 Identities=34% Similarity=0.502 Sum_probs=105.1
Q ss_pred HhHHHHHHhhcHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcccccccCCCCccccCCccc
Q 001666 32 ASRKADEASLRRYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAA 111 (1035)
Q Consensus 32 a~r~a~e~a~r~~ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~KI~~~~~~~~~~~~~a~ 111 (1035)
++.+.+.+.+|+.+++.||++||..++....+ ...+|.++|+||+|||+|+|+|.|+++++++++.
T Consensus 12 ~~v~~k~~~k~~~~~~~el~~WI~~~~~~~~~---~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~----------- 77 (193)
T KOG2046|consen 12 REVQQKIESKYDDELEKELREWIENVVLTELP---ARGDFQDLLKDGVILCKLINKLYPGVVKKINESK----------- 77 (193)
T ss_pred HHHHHHhhcccCHHHHHHHHHHHHHhhccCCC---cccCHHHHHcchHHHHHHHHHhCcCccccccccc-----------
Confidence 67778888999999999999999886433332 2457999999999999999999999999888655
Q ss_pred cccchhhhhHHHHHHHHHHcCCC---CcccchhhccccchhHHHHHHHHHHHhhhhhhc
Q 001666 112 LSAFQYFENVRNFLVAAEELGLP---TFEASDLEQGGKSAMARIVNCVLALKSYSEWKQ 167 (1035)
Q Consensus 112 ~~~F~~~ENI~~FL~ac~~lGlp---~Fet~DL~egkn~~~~kVv~cL~aL~~~~~~k~ 167 (1035)
++|.+||||++||+||+.+||+ .|+++||||+++ +.+|+.||++|++++..+.
T Consensus 78 -~~f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd--~~~V~vtL~aLa~~a~~~~ 133 (193)
T KOG2046|consen 78 -MAFVQMENISNFIKAAKKYGVPEVDLFQTVDLFEGKD--MAQVQVTLLALARKAQKKG 133 (193)
T ss_pred -ccHHHHHHHHHHHHHHHhcCCChhhcccccccccCCC--HHHHHHHHHHHHHHHhhcc
Confidence 8999999999999999999999 599999999888 8999999999999997665
No 31
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.73 E-value=5.8e-18 Score=165.93 Aligned_cols=105 Identities=24% Similarity=0.463 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcccccccCCCCccccCCccccccchhhhhHH
Q 001666 43 RYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVR 122 (1035)
Q Consensus 43 ~~ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~KI~~~~~~~~~~~~~a~~~~F~~~ENI~ 122 (1035)
..|+..||++.++..+... -||.++|+|||+||+++|...|+-| +..+++ ++|.+||||+
T Consensus 15 ~kev~~Wie~~l~~k~~pp-------gdll~~lkdGv~lCril~ea~~~~I-~yKeSk------------mpFVQmenIs 74 (178)
T COG5199 15 QKEVTLWIETVLGEKFEPP-------GDLLSLLKDGVRLCRILNEASPLDI-KYKESK------------MPFVQMENIS 74 (178)
T ss_pred HHHHHHHHHHHHHhhhCCc-------ccHHHHHhcchHHHHHHhhcCcccc-eecccC------------CceeeHHHHH
Confidence 3488899999877655332 2699999999999999999999986 344444 8999999999
Q ss_pred HHHHHHHHcCCC---CcccchhhccccchhHHHHHHHHHHHhhhhhhcCC
Q 001666 123 NFLVAAEELGLP---TFEASDLEQGGKSAMARIVNCVLALKSYSEWKQGG 169 (1035)
Q Consensus 123 ~FL~ac~~lGlp---~Fet~DL~egkn~~~~kVv~cL~aL~~~~~~k~~g 169 (1035)
.||.+.++++|| +|+|+||||.++ ..+|+.||++|+||+..+.++
T Consensus 75 ~Fin~~~k~~vpe~elFQT~DLFE~kd--~~qV~~~l~slSRya~K~~~~ 122 (178)
T COG5199 75 SFINGLKKLRVPEYELFQTNDLFEAKD--LRQVVICLYSLSRYAQKERMF 122 (178)
T ss_pred HHHHHHHHhCCCHHHHHHhhhHHhhcC--HHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999 699999999887 899999999999999766553
No 32
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.55 E-value=1e-14 Score=136.92 Aligned_cols=103 Identities=31% Similarity=0.519 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcccccccCCCCccccCCccccccchhhhhH
Q 001666 42 RRYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENV 121 (1035)
Q Consensus 42 r~~ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~KI~~~~~~~~~~~~~a~~~~F~~~ENI 121 (1035)
.+.++.+|++..++... + ....+|.+.|+||++||+|+|.+.|+.++..... +...|++++||
T Consensus 2 ~~~~l~~Win~~l~~~~----~--~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~-----------~~~~~~~~~Ni 64 (107)
T cd00014 2 QKEELLRWINKVLGEYG----P--VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKIN-----------PLSRFKRLENI 64 (107)
T ss_pred hHHHHHHHHHHHhccCC----C--ccHHHHHHHHhchHHHHHHHHHHCcccccccccc-----------ccchhhHHHHH
Confidence 35688899999765432 1 3468999999999999999999999999776532 23679999999
Q ss_pred HHHHHHHHHcCCC-C-cccchhhccccchhHHHHHHHHHHHhhh
Q 001666 122 RNFLVAAEELGLP-T-FEASDLEQGGKSAMARIVNCVLALKSYS 163 (1035)
Q Consensus 122 ~~FL~ac~~lGlp-~-Fet~DL~egkn~~~~kVv~cL~aL~~~~ 163 (1035)
..||++|+++|+| . |++.||++++| +.+|+.||++|.+++
T Consensus 65 ~~~l~~~~~~gi~~~~~~~~Dl~~~~n--~~~vl~~l~~l~~~~ 106 (107)
T cd00014 65 NLALNFAEKLGVPVVNFDAEDLVEDGD--EKLVLGLLWSLIRKF 106 (107)
T ss_pred HHHHHHHHHcCCceeccCHHHHhhCCC--ceeeHHHHHHHHHhh
Confidence 9999999999999 3 99999998666 799999999999874
No 33
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=99.47 E-value=6.5e-14 Score=173.99 Aligned_cols=122 Identities=30% Similarity=0.525 Sum_probs=97.7
Q ss_pred CCCCcchHhHH----HHHHhhcHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcccccccCC
Q 001666 25 RFSDINLASRK----ADEASLRRYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGP 100 (1035)
Q Consensus 25 ~~~d~~~a~r~----a~e~a~r~~ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~KI~~~~ 100 (1035)
+.+..+|++|+ |.|...|-+||+.||++++ ++++|++. +|.++|||||+|++|.|.+.|..-.++....
T Consensus 22 ~~~~~~~~~rr~~~vaYeyLCr~eE~k~W~e~cl----~edL~ptt---ele~~LRNGV~LAkL~~~f~PD~~~~~~~~~ 94 (1401)
T KOG2128|consen 22 SSSAEEMDERREQNVAYEYLCRVEEAKRWIEECL----GEDLPPTT---ELEEGLRNGVYLAKLGQFFAPDLEQTIYKAN 94 (1401)
T ss_pred cchHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHh----cccCCCch---HHHHHhhhhhHHHHHHhhcCCcceeeeeecC
Confidence 33334454444 4566666679999999966 46677654 7999999999999999999997665555433
Q ss_pred CCccccCCccccccchhhhhHHHHHHHHHHcCCC---CcccchhhccccchhHHHHHHHHHHHhhhhhhcC
Q 001666 101 CDSVVIPDGAALSAFQYFENVRNFLVAAEELGLP---TFEASDLEQGGKSAMARIVNCVLALKSYSEWKQG 168 (1035)
Q Consensus 101 ~~~~~~~~~a~~~~F~~~ENI~~FL~ac~~lGlp---~Fet~DL~egkn~~~~kVv~cL~aL~~~~~~k~~ 168 (1035)
. ..|++.+||..||.|++.+||| .||+.|+|+|+| |+ |+.||+||+.|- .+++
T Consensus 95 ---------~--~~frHtdNi~q~~~~me~iglP~iF~~E~~Dvy~~kN--~p-~i~cihaLs~~l-~k~~ 150 (1401)
T KOG2128|consen 95 ---------D--LHFRHTDNINQWLRAMESIGLPEIFYPETTDVYEGKN--IP-VIYCIHALSLYL-FKQG 150 (1401)
T ss_pred ---------C--ceeecchhHHHHHHHHhhcCCCcccccchhhhhcCCC--Cc-eeeHHHHHHHHH-hcCC
Confidence 2 4499999999999999999999 499999999999 88 999999999986 4443
No 34
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.46 E-value=7.6e-14 Score=165.56 Aligned_cols=119 Identities=28% Similarity=0.466 Sum_probs=104.2
Q ss_pred chHhHHHHHHhhcHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcccccccCCCCccccCCc
Q 001666 30 NLASRKADEASLRRYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDG 109 (1035)
Q Consensus 30 ~~a~r~a~e~a~r~~ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~KI~~~~~~~~~~~~~ 109 (1035)
+....+|.+...|-.||+.||++++++. +| ++.|.+.|||||+|.+|..+++|+.+.+|....
T Consensus 33 ~r~~lraYeyLCRv~EaK~WIee~~~~~----l~----~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~--------- 95 (1054)
T COG5261 33 NRSALRAYEYLCRVSEAKIWIEEVIEEA----LP----ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPAD--------- 95 (1054)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhccC----Cc----hhhHHHHHhccchHHHHHHHhCCCceeEeeecc---------
Confidence 3455778888999999999999987643 33 568999999999999999999999999998542
Q ss_pred cccccchhhhhHHHHHHHHHHcCCC---CcccchhhccccchhHHHHHHHHHHHhhhhhhcCC
Q 001666 110 AALSAFQYFENVRNFLVAAEELGLP---TFEASDLEQGGKSAMARIVNCVLALKSYSEWKQGG 169 (1035)
Q Consensus 110 a~~~~F~~~ENI~~FL~ac~~lGlp---~Fet~DL~egkn~~~~kVv~cL~aL~~~~~~k~~g 169 (1035)
..+|++.+||+.||.....+||| -||..||||+|| +++|+.|||||.+...|++..
T Consensus 96 --~LQfrHtdNIN~Fld~i~~vGlPe~FhFEl~DlYekKN--~pkViyciHaL~~~ls~~g~t 154 (1054)
T COG5261 96 --KLQFRHTDNINAFLDLIEHVGLPESFHFELQDLYEKKN--IPKVIYCIHALISMLSWPGKT 154 (1054)
T ss_pred --cceeeccccHHHHHhHhhhcCCcceeeeehHhhhccCC--cchhHHHHHHHHHHhcCCCCC
Confidence 38999999999999999999999 399999999999 999999999999988766543
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.44 E-value=9.4e-14 Score=160.87 Aligned_cols=130 Identities=26% Similarity=0.352 Sum_probs=110.0
Q ss_pred CCCCCCcchHhH-HHHHHhhcHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcccccccCCC
Q 001666 23 GPRFSDINLASR-KADEASLRRYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPC 101 (1035)
Q Consensus 23 ~~~~~d~~~a~r-~a~e~a~r~~ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~KI~~~~~ 101 (1035)
|..-.|.++.-| +..++...+.|+...|++.|+..+...+| +||.++|.||||||+|+|.|+|.+|+.|+
T Consensus 553 ~~~~~~~s~tir~r~~~q~~eE~eL~~QLRk~iEtRLk~sLp-----~Dl~aALtDGViLChLaN~lRPRSV~SIH---- 623 (722)
T KOG0532|consen 553 NIPNLDPSFTIRPRTGIQNREEKELMLQLRKLIETRLKVSLP-----EDLAAALTDGVILCHLANHLRPRSVASIH---- 623 (722)
T ss_pred CCCCCCccceecccccccchHHHHHHHHHHHHHHHHhcccCc-----hhHHHHhhcchhhHhhhcccCCCCcccee----
Confidence 344567776666 55555555568999999999988888887 68999999999999999999999999998
Q ss_pred CccccCCccccccchhhhhHHHHHHHHHHcCCC---CcccchhhccccchhHHHHHHHHHHHhhh
Q 001666 102 DSVVIPDGAALSAFQYFENVRNFLVAAEELGLP---TFEASDLEQGGKSAMARIVNCVLALKSYS 163 (1035)
Q Consensus 102 ~~~~~~~~a~~~~F~~~ENI~~FL~ac~~lGlp---~Fet~DL~egkn~~~~kVv~cL~aL~~~~ 163 (1035)
|++|....+++.+|+.||.+||.||++|||| ++...|+..+--+++.+|+.++++++..+
T Consensus 624 --VPSPaV~klsmarcrrNVdnFLeaCRkiGVpEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~~a 686 (722)
T KOG0532|consen 624 --VPSPAVPKLSMARCRRNVDNFLEACRKIGVPEADLCSPMDILQKIERNPRKVARTVLTVGKKA 686 (722)
T ss_pred --cCCCccchhHHHHHHHhHHHHHHHHHHcCCChHhhcCHHHhhhhhcccchhHHHHHHhhcccc
Confidence 4567788889999999999999999999999 59999999874455899999999887643
No 36
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=99.42 E-value=2.3e-13 Score=156.04 Aligned_cols=115 Identities=24% Similarity=0.442 Sum_probs=92.3
Q ss_pred HHHHHHHHhhhhhcCCC--CC-CCCCHHHHHHhchhhHHHHHHHhhhcCCcc--cccccCCCCccccCCccccccchhhh
Q 001666 45 EAAGWLRKSVGVVVGKD--LP-AQPSEEEFRLGLRSGIILCNVLNKVQPGAV--AKVVEGPCDSVVIPDGAALSAFQYFE 119 (1035)
Q Consensus 45 ea~~WL~~~ig~~~~~~--lp-~~~seedf~~~LrDGvILC~L~N~l~PgsV--~KI~~~~~~~~~~~~~a~~~~F~~~E 119 (1035)
++++||.++= ++..+ .. +....-||+++|||||+||+|+|.|.|++| ++|+-.|++ ++|-|..
T Consensus 6 qCarWLidck--VLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQm----------SqFLClk 73 (865)
T KOG2996|consen 6 QCARWLIDCK--VLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQM----------SQFLCLK 73 (865)
T ss_pred HHHHHHhhcc--ccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCc----------cchhhHh
Confidence 7899999963 33222 11 134578999999999999999999999998 889988865 8999999
Q ss_pred hHHHHHHHHH-HcCCC---CcccchhhccccchhHHHHHHHHHHHhhhhhhcCCCCCCc
Q 001666 120 NVRNFLVAAE-ELGLP---TFEASDLEQGGKSAMARIVNCVLALKSYSEWKQGGEKGPW 174 (1035)
Q Consensus 120 NI~~FL~ac~-~lGlp---~Fet~DL~egkn~~~~kVv~cL~aL~~~~~~k~~g~~G~~ 174 (1035)
||+.||.+|. .+||. +|++.|||+- .+|.+|+.+|..|++.. ..+.-+..||
T Consensus 74 NIrtFl~~C~~~Fglr~seLF~afDLfdv--~dFgKVi~tlS~LS~t~-ial~rGi~PF 129 (865)
T KOG2996|consen 74 NIRTFLMFCCEKFGLRDSELFEAFDLFDV--RDFGKVIKTLSRLSHTP-IALNRGIRPF 129 (865)
T ss_pred hHHHHHHHHHHHhCCchhhhcchhhhhhh--hhHHHHHHHHHHhccCh-HHHhcCCCCC
Confidence 9999999885 79998 6999999994 45999999999999843 3333344443
No 37
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.41 E-value=4.7e-13 Score=124.48 Aligned_cols=100 Identities=29% Similarity=0.480 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcccccccCCCCccccCCccccccchhhhhHH
Q 001666 43 RYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVR 122 (1035)
Q Consensus 43 ~~ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~KI~~~~~~~~~~~~~a~~~~F~~~ENI~ 122 (1035)
+.++.+|++..++... ....++|.+.|+||++||+|+|.+.|+.+++....+ +...|++++||.
T Consensus 2 ~~~l~~Win~~l~~~~------~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~----------~~~~~~~~~Ni~ 65 (103)
T smart00033 2 EKTLLRWVNSLLAEYG------KPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNA----------SLSRFKKIENIN 65 (103)
T ss_pred hHHHHHHHHHHcccCC------CCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccc----------cccHHHHHHhHH
Confidence 4578899998765321 234679999999999999999999999997654321 236799999999
Q ss_pred HHHHHHHHcCCC--CcccchhhccccchhHHHHHHHHHH
Q 001666 123 NFLVAAEELGLP--TFEASDLEQGGKSAMARIVNCVLAL 159 (1035)
Q Consensus 123 ~FL~ac~~lGlp--~Fet~DL~egkn~~~~kVv~cL~aL 159 (1035)
.||.+|+++|.. .|++.||++|. .++..|+.||+.+
T Consensus 66 ~~l~~~~~~g~~~~~~~~~Dl~~~~-k~~~~v~~~l~~~ 103 (103)
T smart00033 66 LALSFAEKLGGKLVLFEPEDLVEGN-KLILGVIWTLILL 103 (103)
T ss_pred HHHHHHHHcCCeeeccCHHHHhhcc-hHHHHHHHHHHhC
Confidence 999999999953 69999999985 4599999999864
No 38
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.28 E-value=1.4e-11 Score=115.74 Aligned_cols=105 Identities=30% Similarity=0.519 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcccccccCCCCccccCCccccccchhhhhHHH
Q 001666 44 YEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVRN 123 (1035)
Q Consensus 44 ~ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~KI~~~~~~~~~~~~~a~~~~F~~~ENI~~ 123 (1035)
.++..|+++.++.. +...+ ..+|.+.|+||++||+|+|.+.|+.++--.-.+. .. +.|.+++||..
T Consensus 2 ~~ll~Win~~l~~~-~~~~~----v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~--------~~-~~~~~~~Ni~~ 67 (108)
T PF00307_consen 2 KELLKWINSHLEKY-GKGRR----VTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPN--------LK-SPFDKLENIEL 67 (108)
T ss_dssp HHHHHHHHHHHTTS-TTTST----CSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTS--------SS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc-cCCCC----cCcHHHHhcCHHHHHHHHHHHhhccchhhhcccc--------ch-hhhHHHHHHHH
Confidence 47889999987643 21222 2369999999999999999999998732211221 01 77999999999
Q ss_pred HHHHHHH-cCCC-CcccchhhccccchhHHHHHHHHHHHhhhh
Q 001666 124 FLVAAEE-LGLP-TFEASDLEQGGKSAMARIVNCVLALKSYSE 164 (1035)
Q Consensus 124 FL~ac~~-lGlp-~Fet~DL~egkn~~~~kVv~cL~aL~~~~~ 164 (1035)
|+++|++ +|+| .+.+.||+++++ ...|+.||.+|.++++
T Consensus 68 ~l~~~~~~lg~~~~~~~~dl~~~~~--~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 68 ALEAAEKKLGIPPLLSPEDLVEKGD--EKSVLSFLWQLFRYFE 108 (108)
T ss_dssp HHHHHHHHTTSSCTS-HHHHHSTT---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHCcC--HHHHHHHHHHHHHHHC
Confidence 9999998 9999 589999997555 7999999999999864
No 39
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.96 E-value=4e-12 Score=152.94 Aligned_cols=269 Identities=27% Similarity=0.308 Sum_probs=173.6
Q ss_pred HHHHHhhhhhhhcCCCCEEEEEEeCCCCCCCCCCCccEEEec-----CCcEEEEcCCCCCCCCCeEEEeceeeCCCCchH
Q 001666 390 LEENRKLYNQVQDLKGNIRVYCRVRPFLDGQSSFMSTVEHIE-----KGDIVITTPSKYGKEGRKSFSFNKVFGPNATQA 464 (1035)
Q Consensus 390 ~~e~r~L~n~~qdlkGnIRV~~RVRP~~~~E~~~~~~v~~i~-----~~~i~i~~p~~~gk~~~k~F~FD~VF~~~atQe 464 (1035)
-..+|.|++-++..+ +++|+|+|+|..........+..... ...+....+ .........|.||.+|.+...+.
T Consensus 291 skLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~ 368 (568)
T COG5059 291 SKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-SDSSREIEEIKFDLSEDRSEIEI 368 (568)
T ss_pred hHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-CcchHHHHHHHhhhhhhhhhhhh
Confidence 346899999999988 99999999998754322111111111 111111110 11111345799999999999999
Q ss_pred hHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhcc-CCCeEEEEEEEEEEEe
Q 001666 465 EVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQR-RDTIHYDIFVQMLEIY 543 (1035)
Q Consensus 465 eVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~-~~~~~~~V~vS~lEIY 543 (1035)
.++.....+++..++| +++||++++|+++||.- ...++..-.+...|...... ...|.+...+.++++|
T Consensus 369 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 438 (568)
T COG5059 369 LVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS------RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIE 438 (568)
T ss_pred HHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc------hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999964 34456666657777655432 2345666666677777
Q ss_pred cCeeeecccCCCCCcceeeecCCC-CCcccCCCeEEEcCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeee
Q 001666 544 NEQVRDLLVTDGLNKKLEIRNSSQ-NRINVPDANLVPVSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGR 622 (1035)
Q Consensus 544 nE~V~DLL~~~~~~~~l~Ired~~-~gv~V~glt~v~V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~ 622 (1035)
-....+++..........+..... ....+..++ .......+..... .+...+..+++.+|.+++|+|.+|+.+..+.
T Consensus 439 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 516 (568)
T COG5059 439 IDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLS-SIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGS 516 (568)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhh-hcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccch
Confidence 222222222211111000000000 000000011 1111111222222 5677888999999999999999999887655
Q ss_pred ecCCCcEEEEeeEeeecCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001666 623 DLASGTILRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLA 676 (1035)
Q Consensus 623 ~~~~~~~~~skL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALa 676 (1035)
....+... +++|||||+||. .+.+.|.++++...+|++|..++++|.++.
T Consensus 517 ~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 517 NSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 43333222 799999999999 999999999999999999999999998864
No 40
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.59 E-value=5.1e-05 Score=88.47 Aligned_cols=107 Identities=18% Similarity=0.318 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhhh--hcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcc--cccccCCCCccccCCccccccchhh
Q 001666 43 RYEAAGWLRKSVGV--VVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAV--AKVVEGPCDSVVIPDGAALSAFQYF 118 (1035)
Q Consensus 43 ~~ea~~WL~~~ig~--~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV--~KI~~~~~~~~~~~~~a~~~~F~~~ 118 (1035)
+.+-..||...++. .++.-+|.+|...+|.+..+||++||+|+|.=.||.| .-|+.. ..+.+|...
T Consensus 121 k~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~k----------k~Lnp~~~~ 190 (627)
T KOG0046|consen 121 KRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTK----------KKLNPFERN 190 (627)
T ss_pred HHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccC----------CcCChhhhc
Confidence 34667899998763 2344478889999999999999999999999999998 334432 246789999
Q ss_pred hhHHHHHHHHHHcCCCC--cccchhhccccchhHHHHHHHHHHHhh
Q 001666 119 ENVRNFLVAAEELGLPT--FEASDLEQGGKSAMARIVNCVLALKSY 162 (1035)
Q Consensus 119 ENI~~FL~ac~~lGlp~--Fet~DL~egkn~~~~kVv~cL~aL~~~ 162 (1035)
||...-|.-++.+|+.. +-+.||-||+. .-|+--|..+-++
T Consensus 191 EN~~l~lnSAkAiGc~VvNIga~Dl~eGrp---hLVLGLiwQiIki 233 (627)
T KOG0046|consen 191 ENLNLALNSAKAIGCTVVNIGAQDLAEGRP---HLVLGLIWQIIKI 233 (627)
T ss_pred cchhhHHhhcccccceEEecCchhhhcCCc---eeeHHHHHHHHHH
Confidence 99999999999999884 99999999986 6776666666543
No 41
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.54 E-value=0.00011 Score=68.21 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=58.0
Q ss_pred CCCCCCHHHHHHhchhhHHHHHHHhhhcCCccc--ccccCCCCccccCCccccccchhhhhHHHHHHHHH-HcCCCC--c
Q 001666 62 LPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVA--KVVEGPCDSVVIPDGAALSAFQYFENVRNFLVAAE-ELGLPT--F 136 (1035)
Q Consensus 62 lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~--KI~~~~~~~~~~~~~a~~~~F~~~ENI~~FL~ac~-~lGlp~--F 136 (1035)
.|..+..+||...|+||.+||.|++...|+.|+ .|.-.+ ..+.+.++.|+..|..+|. .+|... |
T Consensus 7 ~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~----------~mS~~~~l~N~~ll~~~c~~~l~~~~~~l 76 (85)
T PF11971_consen 7 APYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKT----------TMSQADSLYNLQLLNSFCQSHLGFSCCHL 76 (85)
T ss_pred CCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHccccc----------chHHHHhhhhHHHHHHHHHHHcCCCcCcC
Confidence 445567789999999999999999999999994 455333 3378999999999999997 488774 6
Q ss_pred ccchhhc
Q 001666 137 EASDLEQ 143 (1035)
Q Consensus 137 et~DL~e 143 (1035)
++.||..
T Consensus 77 ~~edl~~ 83 (85)
T PF11971_consen 77 EPEDLLY 83 (85)
T ss_pred CHHHHhc
Confidence 7777753
No 42
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=96.73 E-value=0.003 Score=59.10 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=61.8
Q ss_pred HHHHHhchhhHHHHHHHhhhcCCcccccccCCCCccccCCccccccchhhhhHHHHHHHHH-HcCCC---Ccccchhhcc
Q 001666 69 EEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVRNFLVAAE-ELGLP---TFEASDLEQG 144 (1035)
Q Consensus 69 edf~~~LrDGvILC~L~N~l~PgsV~KI~~~~~~~~~~~~~a~~~~F~~~ENI~~FL~ac~-~lGlp---~Fet~DL~eg 144 (1035)
..+...+|-|.=||.|-|.++|..-..|.+... ...=.+-..|-.|+.||+ ++|+| .|..+|||..
T Consensus 4 t~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~----------~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~ 73 (89)
T PF06395_consen 4 TQLWKLFRQGYPLCVLFNALQPEEPLPVDPVSS----------DDLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGD 73 (89)
T ss_pred HHHHHHHhCcCcHHHHHHccCCccCCCCCCCCc----------chHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccC
Confidence 468999999999999999999975445533221 123345678899999996 79999 5999999975
Q ss_pred ccchhHHHHHHHHHH
Q 001666 145 GKSAMARIVNCVLAL 159 (1035)
Q Consensus 145 kn~~~~kVv~cL~aL 159 (1035)
.-.++.||+..+..|
T Consensus 74 dT~gfvKVi~~V~~v 88 (89)
T PF06395_consen 74 DTNGFVKVIKVVNRV 88 (89)
T ss_pred CCcchhhHHHHHHhh
Confidence 434689998887643
No 43
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=94.91 E-value=0.12 Score=61.51 Aligned_cols=99 Identities=23% Similarity=0.366 Sum_probs=71.3
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcc--cccccCCCCccccCCccccccchhhhhHH
Q 001666 45 EAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAV--AKVVEGPCDSVVIPDGAALSAFQYFENVR 122 (1035)
Q Consensus 45 ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV--~KI~~~~~~~~~~~~~a~~~~F~~~ENI~ 122 (1035)
-...||.. +...|...++.+-||||.||-++..+|.||.| ++++.+| ....++|+..||-.
T Consensus 392 ~fr~WmNS---------lgv~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~--------~~~~~~~kklENcN 454 (627)
T KOG0046|consen 392 TFRLWMNS---------LGVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPP--------SPLKMPFKKVENCN 454 (627)
T ss_pred HHHHHHHh---------cCCcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCC--------CcccccHHHhhcch
Confidence 44577776 22335567899999999999999999999998 5555543 12335688888887
Q ss_pred HHHHHHHHcCCCC--cccchhhccccchhHHHHHHHHHHHhhh
Q 001666 123 NFLVAAEELGLPT--FEASDLEQGGKSAMARIVNCVLALKSYS 163 (1035)
Q Consensus 123 ~FL~ac~~lGlp~--Fet~DL~egkn~~~~kVv~cL~aL~~~~ 163 (1035)
.-.+-.+.++..+ ..-.|+++|.. .-.+--+..|.|++
T Consensus 455 yav~lGk~~~FSLVgi~G~DI~dGNk---~LtLAlvWQLMR~y 494 (627)
T KOG0046|consen 455 YAVKLGKQLKFSLVGIAGQDIVDGNK---TLTLALVWQLMRRY 494 (627)
T ss_pred HHHHHHhhcceeeeccccccccccch---HhHHHHHHHHHHHH
Confidence 7777667666663 88899999854 45555566676654
No 44
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.10 E-value=0.15 Score=60.99 Aligned_cols=92 Identities=24% Similarity=0.342 Sum_probs=57.1
Q ss_pred eEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecCC-------CCCCccchhhHHHHHHHHH
Q 001666 449 KSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGP-------KELTEESLGVNYRALNDLF 521 (1035)
Q Consensus 449 k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~-------~~~~~~~~GIipRal~dLF 521 (1035)
..|....-|.|.-.|-+ .+..||+.+-.|...-+ -.|.|||||||||--- .-.-..+. -...+||
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNK----TLAaQLy 74 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNK----TLAAQLY 74 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecch----hHHHHHH
Confidence 35777777888877753 35667777777765544 4699999999999540 00000111 1234455
Q ss_pred HhhhccCCCeEEEEEEEEEEEecCeee
Q 001666 522 LISNQRRDTIHYDIFVQMLEIYNEQVR 548 (1035)
Q Consensus 522 ~~~~~~~~~~~~~V~vS~lEIYnE~V~ 548 (1035)
.....--........|||+.-|.-..|
T Consensus 75 ~Efk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 75 SEFKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHHhCcCcceEEEeeeccccCcccc
Confidence 554443344567889999999976654
No 45
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.17 E-value=0.09 Score=56.77 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=33.4
Q ss_pred eEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 449 KSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 449 k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
..|+||.-+.. ..++..|..+..+.+.--..+|. +|-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 35899986643 44667777666665552223444 78899999999998754
No 46
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.59 E-value=0.27 Score=56.87 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCCceEec
Q 001666 483 VCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~ 500 (1035)
..|+-||++|+|||+++.
T Consensus 157 ~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358889999999998774
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=88.06 E-value=0.33 Score=52.68 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=33.5
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...++||..+.... ...+ ..+.+.+-.++|-+++-||++|+||||.+.+
T Consensus 10 ~~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 10 IDDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CCcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 34688999886542 2212 2222333457888899999999999999865
No 48
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.95 E-value=0.25 Score=55.98 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=27.6
Q ss_pred HHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 471 RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 471 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.+++..+++--++.|+..|+||||||+||--
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlAa 144 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLAA 144 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHHH
Confidence 4678888999999999999999999999853
No 49
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=87.79 E-value=2 Score=57.64 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcccccccCCCCccccCCccccccchhhhhHHHH
Q 001666 45 EAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVRNF 124 (1035)
Q Consensus 45 ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~KI~~~~~~~~~~~~~a~~~~F~~~ENI~~F 124 (1035)
---.|++..++.+. .. ..||..-|+||+.|-+|+..|.--.++|.+.+. |-.+|.||+..-
T Consensus 52 TFTKWvNShL~rv~-c~------I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGR------------MRIH~LENvdKa 112 (2473)
T KOG0517|consen 52 TFTKWVNSHLARVS-CR------IGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGR------------MRIHCLENVDKA 112 (2473)
T ss_pred hHHHHHHHHHHHhc-ch------hHHHHHHHhhhHHHHHHHHHHccccCCCCCCCc------------eeehhHhhhHHH
Confidence 55679999886542 22 358999999999999999999988888877665 889999999999
Q ss_pred HHHHHHcCCC--Ccccchhhccc
Q 001666 125 LVAAEELGLP--TFEASDLEQGG 145 (1035)
Q Consensus 125 L~ac~~lGlp--~Fet~DL~egk 145 (1035)
|.+.++-.|+ ..-+.|+.+|.
T Consensus 113 LqFLkeqkVhLEniGshDIVDGN 135 (2473)
T KOG0517|consen 113 LQFLKEQKVHLENIGSHDIVDGN 135 (2473)
T ss_pred HHHHHhcccccccCCcccccCCc
Confidence 9999986666 48888888763
No 50
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=87.47 E-value=0.65 Score=54.94 Aligned_cols=84 Identities=20% Similarity=0.376 Sum_probs=63.3
Q ss_pred hcHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcc-cccccCCCCccccCCccccccchhhh
Q 001666 41 LRRYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAV-AKVVEGPCDSVVIPDGAALSAFQYFE 119 (1035)
Q Consensus 41 ~r~~ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV-~KI~~~~~~~~~~~~~a~~~~F~~~E 119 (1035)
-.+..+..|....++ .-.| +...-||...-|||.++|+|+|.-+|..+ +.+..-+ ..+.+.-.|+++|
T Consensus 125 t~~~~lllwc~~~t~----~y~p-~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~q------kknk~~n~~qafe 193 (612)
T COG5069 125 TKHINLLLWCDEDTG----GYKP-EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQ------KKNKALNNFQAFE 193 (612)
T ss_pred Hhhhhhheecccccc----CcCC-CccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchh------hcccchhHHHHHH
Confidence 344566677766443 3344 56678999999999999999999999965 5555422 2345667899999
Q ss_pred hHHHHHHHHHHcCCCC
Q 001666 120 NVRNFLVAAEELGLPT 135 (1035)
Q Consensus 120 NI~~FL~ac~~lGlp~ 135 (1035)
|-..|+.-.+.+|+-.
T Consensus 194 ~a~k~Igi~rli~ved 209 (612)
T COG5069 194 NANKVIGIARLIGVED 209 (612)
T ss_pred HHHHhhchHhhcCcce
Confidence 9999999999999763
No 51
>PRK06620 hypothetical protein; Validated
Probab=87.07 E-value=0.25 Score=53.30 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=35.1
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcc---eeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYN---VCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N---~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||..+-..++ +..|..++.+.+. -|+| -.++-||++||||||.+..
T Consensus 10 ~~~~tfd~Fvvg~~N-~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 10 SSKYHPDEFIVSSSN-DQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCCchhhEecccH-HHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 346889887755444 5577776555432 1444 3589999999999999863
No 52
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.92 E-value=0.32 Score=60.07 Aligned_cols=52 Identities=19% Similarity=0.402 Sum_probs=37.5
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||..+-... +..+|..+..+++..-.+||. ||-||.+|+||||.+..
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 45699998664443 445666666666554456776 89999999999999865
No 53
>PRK12377 putative replication protein; Provisional
Probab=86.79 E-value=0.42 Score=52.94 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=36.5
Q ss_pred EeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 452 SFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 452 ~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
+||........|..++..+..+++.+..+. ..|+-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 455544445567778888788888877654 4578899999999999865
No 54
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.26 E-value=0.35 Score=58.08 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=27.4
Q ss_pred HHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 471 RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 471 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...+..++..-++.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 4567788889999999999999999999975
No 55
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.91 E-value=0.42 Score=52.06 Aligned_cols=49 Identities=10% Similarity=0.328 Sum_probs=33.3
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||.-+.. .+...+..+..++. ......++-||++|+||||.+.+
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 345788866644 55667766655443 22224789999999999999865
No 56
>PRK08116 hypothetical protein; Validated
Probab=85.17 E-value=0.58 Score=52.26 Aligned_cols=51 Identities=18% Similarity=0.390 Sum_probs=37.0
Q ss_pred EEEeceeeCCCCchHhHHHhhHHHHHHHhc--CcceeEEeeccCCCCCceEecC
Q 001666 450 SFSFNKVFGPNATQAEVFSDTRSLIRSVLD--GYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 450 ~F~FD~VF~~~atQeeVf~~v~pLV~svLd--G~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.++||.-. .+..+...|..+...++.+.. ..+..++-||.+|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 35666543 355667778777777877654 3456799999999999998864
No 57
>PRK05642 DNA replication initiation factor; Validated
Probab=84.85 E-value=0.59 Score=50.97 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=31.2
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||.-+.. .+...+..+..+.+.....-.-.++-||++|+||||-+..
T Consensus 13 ~~~~tfdnF~~~--~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 13 RDDATFANYYPG--ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CCcccccccCcC--ChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 346889987743 2344444443333221111124678999999999999754
No 58
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.84 E-value=0.52 Score=52.05 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=34.9
Q ss_pred EEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 451 FSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 451 F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.+||...-....|..++..+...++.+..|+. .++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence 34554333345577788777777776655433 688999999999999865
No 59
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.17 E-value=0.47 Score=56.59 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=35.7
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||.-+-. ..+...|..+..+... -..||. +|-||++|+||||.|..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 456899987743 4556667665555443 122665 99999999999999864
No 60
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.94 E-value=0.51 Score=55.36 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=34.3
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||.-.- ...+...|..+..+...--..+| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 45789988442 34556667666555554212244 477899999999999854
No 61
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=82.94 E-value=2.2 Score=50.20 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=14.9
Q ss_pred ceeEEeeccCCCCCceEe
Q 001666 482 NVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM 499 (1035)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345888999999999765
No 62
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=82.60 E-value=0.59 Score=55.71 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=34.9
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||.-.. ...+...|..+..+.+.--..|| .+|-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 46788988443 23555567666555554323455 478899999999999865
No 63
>PRK06835 DNA replication protein DnaC; Validated
Probab=82.44 E-value=0.62 Score=53.63 Aligned_cols=37 Identities=24% Similarity=0.475 Sum_probs=27.7
Q ss_pred HhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 464 AEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 464 eeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
..+++.+...|+.+-.+. -.|+-||++|+||||.+.+
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 345555566777776554 5699999999999998865
No 64
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=82.42 E-value=8.3 Score=48.22 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=21.3
Q ss_pred HHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 473 LIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 473 LV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
++..+..++...++-||++|+|||+..
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 455556677777888999999999766
No 65
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.08 E-value=0.68 Score=55.47 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=33.8
Q ss_pred EEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 450 SFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 450 ~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.|+||.-+... +++..|..+..++..--..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999866444 455677666555443212245 478999999999999864
No 66
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=81.90 E-value=0.98 Score=48.42 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=32.6
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||..+... .+.++..++.++.. .+....++-||++|+||||.+..
T Consensus 12 ~~~~~~d~f~~~~--~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 12 PPPPTFDNFVAGE--NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CChhhhcccccCC--cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 3458899987322 23445545554442 23445789999999999998754
No 67
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.47 E-value=1.1 Score=47.71 Aligned_cols=48 Identities=21% Similarity=0.475 Sum_probs=33.4
Q ss_pred eEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 449 KSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 449 k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
..|+||.... ..+..++..++.++. ......|+-||++|+||||....
T Consensus 10 ~~~~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 10 DDPTFDNFYA--GGNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CchhhcCcCc--CCcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHH
Confidence 4577777663 245666666655433 45667899999999999998753
No 68
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=81.14 E-value=7.3 Score=46.19 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=30.8
Q ss_pred EEEeceeeCCCCchHhHHHhh-HHHHH-HHhc--C--cceeEEeeccCCCCCceEe
Q 001666 450 SFSFNKVFGPNATQAEVFSDT-RSLIR-SVLD--G--YNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 450 ~F~FD~VF~~~atQeeVf~~v-~pLV~-svLd--G--~N~~IfAYGqTGSGKTyTM 499 (1035)
.++|+.|-+.+..-+++-+.+ .|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 456777776655555555444 34432 2332 2 2346888999999999876
No 69
>PRK09087 hypothetical protein; Validated
Probab=80.89 E-value=0.76 Score=50.01 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=32.4
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||.-+..+++ ..+|..+.. ...-.+-.++-||++||||||.+..
T Consensus 15 ~~~~~~~~Fi~~~~N-~~a~~~l~~----~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 15 DPAYGRDDLLVTESN-RAAVSLVDH----WPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCCCChhceeecCch-HHHHHHHHh----cccCCCCeEEEECCCCCCHHHHHHH
Confidence 346788887754444 446664432 2222355689999999999999863
No 70
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=80.38 E-value=1.2 Score=49.51 Aligned_cols=49 Identities=22% Similarity=0.218 Sum_probs=34.8
Q ss_pred EEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 451 FSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 451 F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
|.|..+-.....+..+|..+..++..+-.|.|. +-||++|+||||...+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl--~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENL--VLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcE--EEECCCCCcHHHHHHH
Confidence 333333334556788888887777777755554 5699999999998865
No 71
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=78.94 E-value=0.95 Score=45.58 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=19.7
Q ss_pred HHHHHhcC-cceeEEeeccCCCCCceEecC
Q 001666 473 LIRSVLDG-YNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 473 LV~svLdG-~N~~IfAYGqTGSGKTyTM~G 501 (1035)
+++.+-.+ ...-++..++||||||++|..
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 34444433 345556677999999999975
No 72
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=78.85 E-value=1.3 Score=50.64 Aligned_cols=40 Identities=30% Similarity=0.543 Sum_probs=27.2
Q ss_pred CchHhHHHhhHHHHHHHhcC-cceeEEeeccCCCCCceEec
Q 001666 461 ATQAEVFSDTRSLIRSVLDG-YNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 461 atQeeVf~~v~pLV~svLdG-~N~~IfAYGqTGSGKTyTM~ 500 (1035)
...++-++.+...+..++.| ...+++-||++|+|||+++.
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 34444455555555555544 55689999999999998874
No 73
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=78.02 E-value=0.5 Score=59.10 Aligned_cols=87 Identities=34% Similarity=0.664 Sum_probs=60.4
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhcc
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQR 527 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~ 527 (1035)
...+.|+.+......+..-+....+-+..++++++.. +|++|+|.+.. ...|+.-+....++......
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 92 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSN----QPGGLLARLFKELIDLANSD 92 (670)
T ss_pred ccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhc----CcchhHHHhhhhcccccccC
Confidence 4567888888776666666666666777777777775 89999999943 34566666666666544333
Q ss_pred CCCeEEEEEEEEEEEecCeeeecccC
Q 001666 528 RDTIHYDIFVQMLEIYNEQVRDLLVT 553 (1035)
Q Consensus 528 ~~~~~~~V~vS~lEIYnE~V~DLL~~ 553 (1035)
... ..++.|++.+.|++..
T Consensus 93 ~~~-------~~~~~~~~~~~~~~~~ 111 (670)
T KOG0239|consen 93 KTS-------NVVEAYNERLRDLLSE 111 (670)
T ss_pred CCc-------hhHHHHHHHHhhhccc
Confidence 221 1678899999999865
No 74
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.60 E-value=1.5 Score=51.30 Aligned_cols=32 Identities=38% Similarity=0.585 Sum_probs=23.3
Q ss_pred HhhHHHHHHHhcCccee-EEeeccCCCCCceEe
Q 001666 468 SDTRSLIRSVLDGYNVC-IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 468 ~~v~pLV~svLdG~N~~-IfAYGqTGSGKTyTM 499 (1035)
+.+...+..++.|.-.. ++.||.||+|||.|+
T Consensus 27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 33444566666655544 999999999999887
No 75
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.54 E-value=28 Score=34.95 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhcC
Q 001666 329 RLLKQQMLIELQQRDIVELKQTLHTAKAGMQFLQVKYMEDLDTLGNQLHGLAHAASSYQKVLEENRKLYNQVQDL 403 (1035)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~e~r~L~n~~qdl 403 (1035)
.+...+..+...+.++.+|+.....++..+...+..|.++-..|...+..+ ...+..+...|+-||++|+.+
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~---~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSEL---EQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhc
Confidence 344555667777788888888888888888888888888887777665544 445666667899999999764
No 76
>PRK08939 primosomal protein DnaI; Reviewed
Probab=76.61 E-value=1.2 Score=50.92 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=33.8
Q ss_pred EEeceeeCCCCchHhHHHhhHHHHHHHhcC-cceeEEeeccCCCCCceEecC
Q 001666 451 FSFNKVFGPNATQAEVFSDTRSLIRSVLDG-YNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 451 F~FD~VF~~~atQeeVf~~v~pLV~svLdG-~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.+||.+-..+..+..++..+...++....| ..-.|+-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455554333335666666556666665543 234689999999999999976
No 77
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=76.50 E-value=1.8 Score=50.19 Aligned_cols=39 Identities=26% Similarity=0.443 Sum_probs=26.2
Q ss_pred chHhHHHhhHHHHHHHhc-CcceeEEeeccCCCCCceEec
Q 001666 462 TQAEVFSDTRSLIRSVLD-GYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 462 tQeeVf~~v~pLV~svLd-G~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.-++-++.+...+..++. +...+++-||++|+|||+++.
T Consensus 34 ~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 34 HREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 344444555555555554 445678999999999998874
No 78
>PRK08727 hypothetical protein; Validated
Probab=75.28 E-value=1.8 Score=47.19 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=28.1
Q ss_pred eEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcc-eeEEeeccCCCCCceEecC
Q 001666 449 KSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYN-VCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 449 k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N-~~IfAYGqTGSGKTyTM~G 501 (1035)
..|+||.-+...+ + ....+..+ ..|+. -.|+-||++|+||||.+..
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~~----~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQAL----AAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHHH----HhccCCCeEEEECCCCCCHHHHHHH
Confidence 4568887664333 2 22222222 22332 3599999999999998865
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=75.12 E-value=1.7 Score=41.12 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=18.1
Q ss_pred HHHhcCcceeEEeeccCCCCCceEec
Q 001666 475 RSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 475 ~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
..+.......++.+|++|+|||+++.
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 33333344568889999999997663
No 80
>PRK06526 transposase; Provisional
Probab=74.58 E-value=1.1 Score=49.60 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=17.4
Q ss_pred cCcceeEEeeccCCCCCceEecC
Q 001666 479 DGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 479 dG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.+.| |+.||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 4555 68899999999999875
No 81
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=74.56 E-value=31 Score=34.89 Aligned_cols=89 Identities=22% Similarity=0.314 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhh----HHHH
Q 001666 325 ESKTRLLKQQMLIELQQRDIVELKQTLHTAKA------------------GMQFLQVKYMEDLDTLGNQLHG----LAHA 382 (1035)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~------------------~~~~~~~~~~~~~~~l~~~~~~----l~~~ 382 (1035)
|-+...+.|.++.++++++|.-|+..+..++. .+..+-.++..+-..|.++++. |...
T Consensus 5 EWktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQE 84 (129)
T PF15372_consen 5 EWKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQE 84 (129)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888888877765542 1122223444455556666654 4567
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCEEEEEEe
Q 001666 383 ASSYQKVLEENRKLYNQVQDLKGNIRVYCRV 413 (1035)
Q Consensus 383 ~~~~~~~~~e~r~L~n~~qdlkGnIRV~~RV 413 (1035)
..+||++-.|||....++....+...|.-|.
T Consensus 85 sKAyhk~ndeRr~ylaEi~~~s~~~~~~k~q 115 (129)
T PF15372_consen 85 SKAYHKANDERRQYLAEISQTSALHQVSKRQ 115 (129)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhhhHhhhccc
Confidence 8899999999999999988877766665444
No 82
>PRK08181 transposase; Validated
Probab=74.31 E-value=2 Score=48.24 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=17.8
Q ss_pred cCcceeEEeeccCCCCCceEecC
Q 001666 479 DGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 479 dG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 78899999999999876
No 83
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=74.30 E-value=3.1 Score=46.03 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHhhhhccccccccccCCCCCcceEEEEEEeeeecCCCcEEEEeeEeeecCCCccc
Q 001666 580 VSSTNDVIEMMNLGQKNRAVGATAMNDRSSRSHSCLTVHVQGRDLASGTILRGSMHLVDLAGSERV 645 (1035)
Q Consensus 580 V~S~eev~~ll~~g~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDLAGSER~ 645 (1035)
+.+++++...+..+... ..+. ...-|.-++.|+|.+.+. -.|+||||+|-.+.
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 46788888888766542 1111 123466688888887653 36899999998643
No 84
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=73.99 E-value=1.1 Score=42.02 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=15.0
Q ss_pred EEeeccCCCCCceEecC
Q 001666 485 IFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~G 501 (1035)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56789999999999976
No 85
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=73.34 E-value=0.88 Score=50.39 Aligned_cols=126 Identities=16% Similarity=0.266 Sum_probs=70.7
Q ss_pred EEeceeeCCCCchHhHHHhhHHHHHHHhcCcce-eEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCC
Q 001666 451 FSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNV-CIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRD 529 (1035)
Q Consensus 451 F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~-~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~ 529 (1035)
..+|...+-+...+.+.+.+ ..++.|..+ .++-||..|+|||.++-+ ++..... +
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlVka------------------ll~~y~~--~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLVKA------------------LLNEYAD--Q 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHHHH------------------HHHHHhh--c
Confidence 44566666555555555555 456667655 366699999999877743 1211111 1
Q ss_pred CeEEEEEEEEEEEecCeeeecccC----CCCCcceeeecCCCCCcccCCCeEEEc-CCHHHHHHHHHhhhhccccccccc
Q 001666 530 TIHYDIFVQMLEIYNEQVRDLLVT----DGLNKKLEIRNSSQNRINVPDANLVPV-SSTNDVIEMMNLGQKNRAVGATAM 604 (1035)
Q Consensus 530 ~~~~~V~vS~lEIYnE~V~DLL~~----~~~~~~l~Ired~~~gv~V~glt~v~V-~S~eev~~ll~~g~~nR~v~sT~~ 604 (1035)
+ +.++||..+.+.||-.- ...+.+.- +++.+|+.-.- .+...+..+|+-|...| ....-+
T Consensus 80 G------LRlIev~k~~L~~l~~l~~~l~~~~~kFI--------lf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~Nvli 144 (249)
T PF05673_consen 80 G------LRLIEVSKEDLGDLPELLDLLRDRPYKFI--------LFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLI 144 (249)
T ss_pred C------ceEEEECHHHhccHHHHHHHHhcCCCCEE--------EEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEE
Confidence 1 56788888877766411 00111111 23445443322 23556667776666554 455566
Q ss_pred cCCCCCcceEE
Q 001666 605 NDRSSRSHSCL 615 (1035)
Q Consensus 605 N~~SSRSH~If 615 (1035)
...|.|-|.|=
T Consensus 145 yATSNRRHLv~ 155 (249)
T PF05673_consen 145 YATSNRRHLVP 155 (249)
T ss_pred EEecchhhccc
Confidence 77788888664
No 86
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=72.26 E-value=5.6 Score=41.30 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=50.0
Q ss_pred HHHHhchhhHHHHHHHhhhcCCcccccccCCCCccccCCccccccchhhhhHHHH-HHHHHHcCCCCcccc---hhhccc
Q 001666 70 EFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVRNF-LVAAEELGLPTFEAS---DLEQGG 145 (1035)
Q Consensus 70 df~~~LrDGvILC~L~N~l~PgsV~KI~~~~~~~~~~~~~a~~~~F~~~ENI~~F-L~ac~~lGlp~Fet~---DL~egk 145 (1035)
.++..+.||++++.++.+..|..|.--+-.+. .+.-..+.|-..| .+.++++|++ |... ++..++
T Consensus 16 n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~----------~s~~~Kl~NW~~Ln~kvl~kl~~~-l~~~~i~~i~~~~ 84 (158)
T PF06294_consen 16 NIRRDFSDGYLVAEILSRYYPKLVDLHNYSNG----------NSVAQKLNNWETLNEKVLKKLGIK-LDKEDIEGIINCK 84 (158)
T ss_dssp -HHHHHTTSHHHHHHHHHH-TTT---SS--------------SSHHHHHHHHHHHHHHTTGGGT-----HHHHHHHHTT-
T ss_pred chHHHcccccHHHHHHHHHCCCCccccccCCC----------CCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhCC
Confidence 58889999999999999999998743332221 1455668899999 8888999986 3333 444555
Q ss_pred cchhHHHHHHHHHHH
Q 001666 146 KSAMARIVNCVLALK 160 (1035)
Q Consensus 146 n~~~~kVv~cL~aL~ 160 (1035)
......++.+|+..-
T Consensus 85 ~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 85 PGAAESLLYQLYTKL 99 (158)
T ss_dssp TTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 544667777776665
No 87
>PRK10436 hypothetical protein; Provisional
Probab=72.06 E-value=1.7 Score=52.46 Aligned_cols=29 Identities=38% Similarity=0.452 Sum_probs=23.9
Q ss_pred HHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 473 LIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 473 LV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.+..++..-++.|+..|+||||||.||..
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 45556677788999999999999999953
No 88
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=71.86 E-value=1.5 Score=56.27 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=24.1
Q ss_pred HHhhHHHHHHHhc--CcceeEEeeccCCCCCceEec
Q 001666 467 FSDTRSLIRSVLD--GYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 467 f~~v~pLV~svLd--G~N~~IfAYGqTGSGKTyTM~ 500 (1035)
+..+..++..++. |-+.|||.||++|+|||.|+.
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHH
Confidence 3344455555554 445678999999999998874
No 89
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=71.18 E-value=1.8 Score=43.22 Aligned_cols=28 Identities=32% Similarity=0.511 Sum_probs=21.6
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.++..+..|.+ ++..|+||||||+.+..
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 34556667777 67889999999988764
No 90
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=71.15 E-value=1.8 Score=53.43 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=24.5
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
..+..++..-++.|+..|+||||||.||..
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 345666777788999999999999999854
No 91
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=70.68 E-value=30 Score=42.41 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001666 342 RDIVELKQTLHTAKAGMQFLQVKYMEDLDTLGNQLHGL 379 (1035)
Q Consensus 342 ~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l 379 (1035)
+....++..++.+..++...|.+|+.++++|++.-+.|
T Consensus 226 K~~vs~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeL 263 (980)
T KOG0447|consen 226 KRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKEL 263 (980)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33445555566666666777888888888777654433
No 92
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=70.67 E-value=2 Score=52.05 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=24.3
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
..+..++..-++.|+..|+||||||.||..
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 345566777778899999999999999964
No 93
>PF13245 AAA_19: Part of AAA domain
Probab=70.41 E-value=1.9 Score=39.16 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=18.6
Q ss_pred HHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 474 IRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 474 V~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
|..++. -+..+...|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 454555 333445589999999998853
No 94
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=69.45 E-value=1.3 Score=42.64 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=13.3
Q ss_pred ceeEEeeccCCCCCceEec
Q 001666 482 NVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~ 500 (1035)
..+++.+|.+|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4578999999999998763
No 95
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=69.35 E-value=98 Score=28.84 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001666 334 QMLIELQQRDIVELKQTLHTAKAGMQFLQVKYMEDLDTLGNQLH 377 (1035)
Q Consensus 334 ~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~ 377 (1035)
..-+.+|..|++.++..+-.+......++..|.+++..|...+.
T Consensus 31 e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 31 EHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478888889999999999999999999999999998877654
No 96
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=69.04 E-value=2.9 Score=50.16 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=35.4
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHH--hcC--cceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSV--LDG--YNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~sv--LdG--~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||.-+-. .+++..|..+..+.+.. ..| ||. +|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 467999987753 35556666665555433 223 454 67899999999999864
No 97
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=68.56 E-value=2.3 Score=47.97 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=27.2
Q ss_pred EeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 452 SFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 452 ~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.||.+.+ |+++.+.+..++. .|....++-||++|+|||+++..
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHH
Confidence 4666654 5555555443333 34433578899999999998743
No 98
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=68.31 E-value=2.3 Score=49.07 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=21.3
Q ss_pred HHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 473 LIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 473 LV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.+..++.--...|+-.|+||||||+||..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 44444443456788999999999999953
No 99
>PRK06921 hypothetical protein; Provisional
Probab=68.04 E-value=3.4 Score=46.20 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=25.3
Q ss_pred hHHHhhHHHHHHHhc---CcceeEEeeccCCCCCceEecC
Q 001666 465 EVFSDTRSLIRSVLD---GYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 465 eVf~~v~pLV~svLd---G~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.++..+...+..+-+ +..-.|+-||++|+||||.+..
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 355545556665532 2344678899999999999865
No 100
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=67.74 E-value=1.7 Score=40.54 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=16.1
Q ss_pred eeEEeeccCCCCCceEecC
Q 001666 483 VCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~G 501 (1035)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999998854
No 101
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=67.44 E-value=1.8 Score=46.47 Aligned_cols=17 Identities=47% Similarity=0.687 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCceEec
Q 001666 484 CIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~ 500 (1035)
-+..+|.||||||+|+.
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34567999999999984
No 102
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=66.55 E-value=3.1 Score=49.33 Aligned_cols=52 Identities=19% Similarity=0.434 Sum_probs=31.9
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+||.-.... ++...|.....+-+.--.-||- ||-||.+|+||||.|..
T Consensus 81 ~~~ytFdnFv~g~-~N~~A~aa~~~va~~~g~~~np-lfi~G~~GlGKTHLl~A 132 (408)
T COG0593 81 NPKYTFDNFVVGP-SNRLAYAAAKAVAENPGGAYNP-LFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCCchhheeeCC-chHHHHHHHHHHHhccCCcCCc-EEEECCCCCCHHHHHHH
Confidence 4568998865443 3444444433222222122554 78999999999999954
No 103
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=66.53 E-value=1.9 Score=45.67 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=16.0
Q ss_pred eeEEeeccCCCCCceEec
Q 001666 483 VCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~ 500 (1035)
+.|+-.|+||||||++|.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999984
No 104
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=66.31 E-value=8.7 Score=49.29 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=34.6
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhHHHHHHHHHHhhhccCCCeEEEEEEEEEE
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALNDLFLISNQRRDTIHYDIFVQMLE 541 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~~~V~vS~lE 541 (1035)
..+..+.+|+|+.|.| +||||||-+- ++| ++..|+..-........+.++||=+-
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAA------------fLp-il~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAA------------FLP-VINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHH------------HHH-HHHHHHhccCCCCCCceEEEEeCcHH
Confidence 3566778999999988 9999998553 344 45556654211222335666666443
No 105
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.08 E-value=3.9 Score=45.99 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=27.6
Q ss_pred HHhh--HHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 467 FSDT--RSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 467 f~~v--~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
|+++ .+++..+.--..+.|+..|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4553 567788777788889999999999999984
No 106
>PF12846 AAA_10: AAA-like domain
Probab=65.62 E-value=2 Score=46.89 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=16.0
Q ss_pred ceeEEeeccCCCCCceEec
Q 001666 482 NVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~ 500 (1035)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999998885
No 107
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=65.34 E-value=2.9 Score=49.05 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=16.9
Q ss_pred cceeEEeeccCCCCCceEec
Q 001666 481 YNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45567889999999999984
No 108
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=65.25 E-value=2.4 Score=44.34 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=21.4
Q ss_pred HHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 471 RSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 471 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
..|.+.+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 444444445668899999999999998773
No 109
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=64.92 E-value=3 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=18.4
Q ss_pred CcceeEEeeccCCCCCceEecC
Q 001666 480 GYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 480 G~N~~IfAYGqTGSGKTyTM~G 501 (1035)
--...|+..|+||||||.||..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHH
Confidence 3467899999999999999853
No 110
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=64.53 E-value=1.8 Score=43.97 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=16.5
Q ss_pred hhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 469 DTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 469 ~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.+..++.....|..-+++-+|..|+|||+.+
T Consensus 11 ~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 11 RLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 3334444334666778999999999999876
No 111
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=64.50 E-value=3.3 Score=46.22 Aligned_cols=30 Identities=37% Similarity=0.509 Sum_probs=22.5
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
..+..++..-...|+-.|.||||||.||..
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 345566655566788889999999999853
No 112
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=63.30 E-value=3.3 Score=43.94 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=21.5
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
..|+.++...+-.++..|..||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 45666766555556668999999999884
No 113
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=62.36 E-value=3.1 Score=45.92 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=19.7
Q ss_pred hHHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 470 TRSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 470 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
+..++..++.+ .+.|+-.|.||||||.+|.
T Consensus 116 ~~~~l~~~v~~-~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 116 IAEFLRSAVRG-RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHHCHHT-TEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhhcccc-ceEEEEECCCccccchHHH
Confidence 34444444444 3445667999999999984
No 114
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=61.46 E-value=4.7 Score=42.31 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCCceEecC
Q 001666 483 VCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~G 501 (1035)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3588899999999998865
No 115
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=61.32 E-value=3.5 Score=41.41 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=12.7
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
.+--.|.||+||||+-
T Consensus 55 VlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS 70 (127)
T ss_pred EEEeecCCCCcHHHHH
Confidence 4556799999999864
No 116
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.10 E-value=21 Score=40.78 Aligned_cols=103 Identities=19% Similarity=0.345 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcc--cccccCCCCccccCCccccccchhhh
Q 001666 42 RRYEAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAV--AKVVEGPCDSVVIPDGAALSAFQYFE 119 (1035)
Q Consensus 42 r~~ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV--~KI~~~~~~~~~~~~~a~~~~F~~~E 119 (1035)
-|.|+..|+.+++.. ++. -.+-|..|..-|.++..+.||.| +||+-. +...+.+.-
T Consensus 16 sR~E~laW~N~~l~~----n~~-------kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~-----------A~~Ehe~i~ 73 (295)
T KOG3000|consen 16 SRLEILAWINDLLQL----NLT-------KIEELCTGAAYCQLMDMLFPPDIPLKKVKFA-----------ARLEHEYIP 73 (295)
T ss_pred chHHHHHHHHhhhhc----chh-------hhhhhcccchhhhhhhhccCCcccccccccc-----------ccccchhhh
Confidence 456899999997642 222 45678899999999999999988 455421 235677788
Q ss_pred hHHHHHHHHHHcCCC-CcccchhhccccchhHHHHHHHHHHHhhhhhhcCC
Q 001666 120 NVRNFLVAAEELGLP-TFEASDLEQGGKSAMARIVNCVLALKSYSEWKQGG 169 (1035)
Q Consensus 120 NI~~FL~ac~~lGlp-~Fet~DL~egkn~~~~kVv~cL~aL~~~~~~k~~g 169 (1035)
|-..+-.+-.++|+. ...+.+|..|+- .--+.-+..+++++....+|
T Consensus 74 Nfk~lQ~~f~klgi~k~v~vdkLvKg~~---qDNlEF~qWfkkffd~~~~g 121 (295)
T KOG3000|consen 74 NFKVLQTCFNKLGIDKVVDVDKLVKGPF---QDNLEFLQWFKKFFDANYGG 121 (295)
T ss_pred hhHHHHHHHHhcCCcccccHHHHhcccc---cchHHHHHHHHHHhhccCCc
Confidence 888888788899998 588888988764 55566677888877655444
No 117
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=60.98 E-value=5.3 Score=44.72 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=27.9
Q ss_pred CCCCchHhHHHhhHHHHHHHhcC--cceeEEeeccCCCCCceEec
Q 001666 458 GPNATQAEVFSDTRSLIRSVLDG--YNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 458 ~~~atQeeVf~~v~pLV~svLdG--~N~~IfAYGqTGSGKTyTM~ 500 (1035)
+.-..|+++.+.+..++.....+ ....++-||+.|+|||+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 33445777777766666554332 12236679999999998764
No 118
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.97 E-value=46 Score=39.20 Aligned_cols=47 Identities=28% Similarity=0.602 Sum_probs=31.8
Q ss_pred eEEeeccCCCCCceEe--------------cCCCCCCccchhhHHHHHHHHHHhhhccCCCe
Q 001666 484 CIFAYGQTGSGKTFTM--------------TGPKELTEESLGVNYRALNDLFLISNQRRDTI 531 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM--------------~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~ 531 (1035)
-|+-||+.|+|||-.- .|+. ....-.|==+|.+++||.....+...+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE-lVqKYiGEGaRlVRelF~lArekaPsI 247 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE-LVQKYIGEGARLVRELFELAREKAPSI 247 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH-HHHHHhccchHHHHHHHHHHhhcCCeE
Confidence 4889999999998532 2210 011223556899999999988776654
No 119
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=60.62 E-value=4.6 Score=46.41 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=19.4
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.++..++.+. ..|+-.|.||||||++|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4555555543 456666999999997774
No 120
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=60.05 E-value=4.9 Score=43.81 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=18.4
Q ss_pred HHhcCcceeEEeeccCCCCCceEec
Q 001666 476 SVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 476 svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
..+......++-+|++|+|||+++.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344445567889999999998764
No 121
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=58.67 E-value=3 Score=44.54 Aligned_cols=17 Identities=47% Similarity=0.581 Sum_probs=15.0
Q ss_pred eEEeeccCCCCCceEec
Q 001666 484 CIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~ 500 (1035)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 57789999999999985
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=58.00 E-value=11 Score=47.65 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=51.4
Q ss_pred EEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecCCCCCCccchhhH----HHHHHHHHHhhhc
Q 001666 451 FSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVN----YRALNDLFLISNQ 526 (1035)
Q Consensus 451 F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIi----pRal~dLF~~~~~ 526 (1035)
|....=|.|.-.|..-+.. +++.+-+|...- ..+|.|||||||||..--... ..+-|+ -....+|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~-~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQV-NRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557788888776655 455555664222 378999999999996511000 000000 0122334433322
Q ss_pred cCCCeEEEEEEEEEEEecCeee
Q 001666 527 RRDTIHYDIFVQMLEIYNEQVR 548 (1035)
Q Consensus 527 ~~~~~~~~V~vS~lEIYnE~V~ 548 (1035)
--........|||+.-|.-..|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 2223357788999999976644
No 123
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=57.96 E-value=5.5 Score=45.32 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=20.2
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.++..++.+ ...|+-.|.||||||++|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555554 3456788999999999884
No 124
>PF13479 AAA_24: AAA domain
Probab=57.84 E-value=4.2 Score=43.65 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=16.9
Q ss_pred ceeEEeeccCCCCCceEecC
Q 001666 482 NVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~G 501 (1035)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 46788999999999987754
No 125
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=57.53 E-value=70 Score=36.09 Aligned_cols=81 Identities=22% Similarity=0.397 Sum_probs=49.1
Q ss_pred EEeceeeCCCCchHhHHHhh-HHHHHHHh---cCcc--eeEEeeccCCCCCceEecCCCC-------------CCccchh
Q 001666 451 FSFNKVFGPNATQAEVFSDT-RSLIRSVL---DGYN--VCIFAYGQTGSGKTFTMTGPKE-------------LTEESLG 511 (1035)
Q Consensus 451 F~FD~VF~~~atQeeVf~~v-~pLV~svL---dG~N--~~IfAYGqTGSGKTyTM~G~~~-------------~~~~~~G 511 (1035)
-++..|=+-+..-++|-+.+ -||...=| =|.+ --++.||+.|+|||-..-.-.. ....-.|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 34445555566666666665 35555433 1332 2478999999999843321100 1123347
Q ss_pred hHHHHHHHHHHhhhccCCCe
Q 001666 512 VNYRALNDLFLISNQRRDTI 531 (1035)
Q Consensus 512 IipRal~dLF~~~~~~~~~~ 531 (1035)
--||.++++|....+....+
T Consensus 232 egprmvrdvfrlakenapsi 251 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENAPSI 251 (408)
T ss_pred cCcHHHHHHHHHHhccCCcE
Confidence 77999999999987766654
No 126
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=57.08 E-value=4.3 Score=38.69 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999765
No 127
>PRK10884 SH3 domain-containing protein; Provisional
Probab=56.62 E-value=40 Score=36.62 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001666 326 SKTRLLKQQMLIELQQRDIVELKQTLHTAKAG 357 (1035)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~ 357 (1035)
...++.+.+..++.++.++.++...+...+++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~ 122 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAE 122 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33334333333444444444444333333333
No 128
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=56.12 E-value=6 Score=45.73 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=20.2
Q ss_pred hHHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 470 TRSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 470 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
+..++..++.+. ..|+..|.||||||.+|-
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 345555555443 336678999999999884
No 129
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=55.72 E-value=5 Score=41.92 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=18.3
Q ss_pred HHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 473 LIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 473 LV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.|..++.--. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 4555554444 456689999999988854
No 130
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=55.65 E-value=99 Score=37.37 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999999776
No 131
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=55.62 E-value=42 Score=44.83 Aligned_cols=27 Identities=37% Similarity=0.767 Sum_probs=21.7
Q ss_pred HHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 471 RSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 471 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..+|..++.|.++.+. -+||+|||.+-
T Consensus 466 ~eaI~aiL~GrDVLVi--mPTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFVL--MPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEEE--cCCCccHHHHH
Confidence 3678899999996554 59999999863
No 132
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.58 E-value=8.2 Score=45.63 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=17.0
Q ss_pred ceeEEeeccCCCCCceEecC
Q 001666 482 NVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|+.+|+||+|||.|+.-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999999853
No 133
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=54.84 E-value=12 Score=41.29 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=29.7
Q ss_pred eCCCCchHhHHHhhHHHHHHHhcCc--ceeEEeeccCCCCCceE
Q 001666 457 FGPNATQAEVFSDTRSLIRSVLDGY--NVCIFAYGQTGSGKTFT 498 (1035)
Q Consensus 457 F~~~atQeeVf~~v~pLV~svLdG~--N~~IfAYGqTGSGKTyT 498 (1035)
|++-..|+.+-...+.+++.+.... =..++-||+.|.|||..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 4556679999988888898886432 23578899999999853
No 134
>PRK09183 transposase/IS protein; Provisional
Probab=54.40 E-value=6.6 Score=43.67 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=16.6
Q ss_pred cCcceeEEeeccCCCCCceEecC
Q 001666 479 DGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 479 dG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4655 45689999999998865
No 135
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=54.29 E-value=9.2 Score=43.03 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=14.8
Q ss_pred eEEeeccCCCCCceEecC
Q 001666 484 CIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~G 501 (1035)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 455669999999999864
No 136
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=53.95 E-value=5.8 Score=45.78 Aligned_cols=28 Identities=46% Similarity=0.572 Sum_probs=19.3
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.++..++.+. ..|+-.|.||||||++|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4444454432 346788999999999984
No 137
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=53.54 E-value=7.5 Score=38.81 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=18.8
Q ss_pred HHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 473 LIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 473 LV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
++..++++. .-++..|+||||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344555552 3346678999999998765
No 138
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=52.89 E-value=7.1 Score=45.34 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=21.4
Q ss_pred HHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 471 RSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 471 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..++..++.++ +-|+-.|.||||||+++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 34555556665 77888999999999886
No 139
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=52.52 E-value=7.8 Score=40.56 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=19.4
Q ss_pred HHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 471 RSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 471 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.+++..++.. ...+.-.|+||||||.+|.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 3455555543 2345667999999998874
No 140
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=52.51 E-value=9.4 Score=41.34 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=16.7
Q ss_pred HHHHhcCcceeEEeeccCCCCCceEec
Q 001666 474 IRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 474 V~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
++.++ .+-.+++.|+.||||||.-.
T Consensus 13 ~~al~--~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 13 LDALL--NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp HHHHH--H-SEEEEE--TTSSTTHHHH
T ss_pred HHHHH--hCCeEEEECCCCCcHHHHHH
Confidence 44444 56689999999999998764
No 141
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=52.11 E-value=7.8 Score=48.95 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=28.5
Q ss_pred HhHHHhhHHHHHHH-hcCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSV-LDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~sv-LdG~N~~IfAYGqTGSGKTyTM 499 (1035)
--||.........+ ..+.|-||+-.|.+|||||+|+
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 35777765555554 4789999999999999999886
No 142
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=51.88 E-value=8.5 Score=44.82 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=26.7
Q ss_pred CCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 460 NATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 460 ~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
+..|+.+|+.+-..+.. .....+|.-|+-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
Confidence 35688999887333332 34456788999999999887
No 143
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.74 E-value=4e+02 Score=33.30 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHhhhhhc-----CCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCc
Q 001666 42 RRYEAAGWLRKSVGVVV-----GKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGA 92 (1035)
Q Consensus 42 r~~ea~~WL~~~ig~~~-----~~~lp~~~seedf~~~LrDGvILC~L~N~l~Pgs 92 (1035)
|+.++.+-|.+.+-.-. +..+-..||..||.. |+-.|-+.|.|+.
T Consensus 71 ~~s~c~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~------iFkfLY~~Ldp~y 120 (581)
T KOG0995|consen 71 YRSQCIRQIYNFLVENGFSHPISIKLLMKPSVKDFIA------IFKFLYGFLDPDY 120 (581)
T ss_pred HHHHHHHHHHHHHHHcCCCCChhhhhcCCCccccHHH------HHHHHHhccCCCc
Confidence 56677777777653221 111223466677776 3446778888753
No 144
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=51.38 E-value=5.9 Score=37.78 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=13.5
Q ss_pred EEeeccCCCCCceEec
Q 001666 485 IFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~ 500 (1035)
|+-||+.|+|||+...
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5789999999998763
No 145
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=50.69 E-value=8.2 Score=46.05 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=19.8
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceE
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFT 498 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyT 498 (1035)
..+..+++|.| +++.++||||||.+
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 45667789988 56677999999965
No 146
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=50.41 E-value=11 Score=43.24 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=15.9
Q ss_pred cceeEEeeccCCCCCceEec
Q 001666 481 YNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.---.+-||+.|+|||.|..
T Consensus 56 ~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred CCceEEeeCCCCCcHhHHHH
Confidence 33356789999999999874
No 147
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=50.13 E-value=9.2 Score=39.80 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=19.3
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..++.++.|.| ++..++||+|||.+.
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 34556667887 467789999999773
No 148
>PTZ00424 helicase 45; Provisional
Probab=50.06 E-value=8.2 Score=44.77 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=21.3
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
..+..+++|.|+. ..++||||||.+..
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~~ 83 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHHH
Confidence 4677788999864 56899999997653
No 149
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=49.50 E-value=7.7 Score=43.64 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=17.3
Q ss_pred cCc-ceeEEeeccCCCCCceEecC
Q 001666 479 DGY-NVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 479 dG~-N~~IfAYGqTGSGKTyTM~G 501 (1035)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 454 34667799999999998743
No 150
>PHA00276 phage lambda Rz-like lysis protein
Probab=49.03 E-value=54 Score=33.75 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=12.3
Q ss_pred CCCEEEEEEeCCCC
Q 001666 404 KGNIRVYCRVRPFL 417 (1035)
Q Consensus 404 kGnIRV~~RVRP~~ 417 (1035)
.||+|+-+|++|..
T Consensus 81 sGn~RLqvr~~a~s 94 (144)
T PHA00276 81 SDNKRLRVRLKPTS 94 (144)
T ss_pred cCCceEEeeeeccc
Confidence 49999999999964
No 151
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.75 E-value=8.4 Score=45.58 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=24.5
Q ss_pred chHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 462 TQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 462 tQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.|+.+......+...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 455555443333333445555567779999999997764
No 152
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=48.44 E-value=11 Score=47.53 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=23.0
Q ss_pred HhhHHHHHHHhc-----CcceeEEeeccCCCCCceEecC
Q 001666 468 SDTRSLIRSVLD-----GYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 468 ~~v~pLV~svLd-----G~N~~IfAYGqTGSGKTyTM~G 501 (1035)
..+..+++++.. |.+..|+. -+||||||+||..
T Consensus 245 ~av~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~~ 282 (667)
T TIGR00348 245 RAVKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHHH
Confidence 345677777765 34555544 3899999999975
No 153
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=48.15 E-value=5.2 Score=42.20 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceEecC
Q 001666 484 CIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~G 501 (1035)
-++.+|+||||||.+|..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 578999999999988853
No 154
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=47.33 E-value=9.7 Score=44.99 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=21.0
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..|..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 45677788987 778899999999763
No 155
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=46.99 E-value=77 Score=34.81 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 001666 380 AHAASSYQKVLEENRKLYNQVQ 401 (1035)
Q Consensus 380 ~~~~~~~~~~~~e~r~L~n~~q 401 (1035)
......|.+.++|..+|.++++
T Consensus 189 e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 189 EGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHcccHHHHHHHHHHHHHHHHh
Confidence 3345578888888888888775
No 156
>PRK04195 replication factor C large subunit; Provisional
Probab=46.69 E-value=13 Score=44.90 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=26.7
Q ss_pred hHhHHHhhHHHHHHHhcCc-ceeEEeeccCCCCCceEec
Q 001666 463 QAEVFSDTRSLIRSVLDGY-NVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 463 QeeVf~~v~pLV~svLdG~-N~~IfAYGqTGSGKTyTM~ 500 (1035)
|+++-..+...+.....|. .-.++-||++|+|||++..
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 4444455566666666665 4568889999999998763
No 157
>PRK06547 hypothetical protein; Provisional
Probab=46.52 E-value=14 Score=38.61 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=19.8
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.++..+..+.-..|.-+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3445555555556777799999999764
No 158
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=46.31 E-value=8 Score=37.81 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
.|+..|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999765
No 159
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=46.23 E-value=11 Score=46.29 Aligned_cols=32 Identities=28% Similarity=0.516 Sum_probs=24.5
Q ss_pred hhHHHHHHHhcCcc--eeEEeeccCCCCCceEec
Q 001666 469 DTRSLIRSVLDGYN--VCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 469 ~v~pLV~svLdG~N--~~IfAYGqTGSGKTyTM~ 500 (1035)
+|+..++..+.|.. -.++.+|++|+|||.|+.
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 46667777776654 467889999999999883
No 160
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=46.21 E-value=14 Score=41.78 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=31.2
Q ss_pred eEEeeccCCCCCceEecCCCC-------------CCccchhhHHHHHHHHHHhhhccCC
Q 001666 484 CIFAYGQTGSGKTFTMTGPKE-------------LTEESLGVNYRALNDLFLISNQRRD 529 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~G~~~-------------~~~~~~GIipRal~dLF~~~~~~~~ 529 (1035)
.|+-||++|+|||++--.-.+ .-.+..|=-.|-+++||....+...
T Consensus 153 nVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aP 211 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAP 211 (368)
T ss_pred eeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 567899999999986432110 1124557777889999988765543
No 161
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=45.75 E-value=7.3 Score=42.84 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=15.8
Q ss_pred cceeEEeeccCCCCCceEecC
Q 001666 481 YNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.+..++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 566777778899999999964
No 162
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=45.55 E-value=7 Score=45.47 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 471 RSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 471 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
..++..++.+ ...|+..|+||||||++|..
T Consensus 152 ~~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 152 EAFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 4455555532 23366789999999998854
No 163
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=44.99 E-value=6.1 Score=37.75 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=13.7
Q ss_pred EEeeccCCCCCceEec
Q 001666 485 IFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~ 500 (1035)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999998773
No 164
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=44.87 E-value=14 Score=42.32 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=26.1
Q ss_pred CchHhHHHhhHHHHHHHhc-C-cceeEEeeccCCCCCceEec
Q 001666 461 ATQAEVFSDTRSLIRSVLD-G-YNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 461 atQeeVf~~v~pLV~svLd-G-~N~~IfAYGqTGSGKTyTM~ 500 (1035)
..|+++-..+..++..... | .-..++-||++|+|||+...
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 4566666665555555432 2 22357779999999998874
No 165
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=44.70 E-value=13 Score=49.77 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=19.6
Q ss_pred HHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 473 LIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 473 LV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
+++.+.+|...+++ ..+||||||+||.+
T Consensus 425 i~~a~~~g~r~~Ll-~maTGSGKT~tai~ 452 (1123)
T PRK11448 425 VEKAIVEGQREILL-AMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHhccCCeEE-EeCCCCCHHHHHHH
Confidence 34444567655444 48999999999875
No 166
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=44.66 E-value=8.3 Score=36.56 Aligned_cols=15 Identities=47% Similarity=0.412 Sum_probs=13.0
Q ss_pred EEeeccCCCCCceEe
Q 001666 485 IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM 499 (1035)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999765
No 167
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.65 E-value=11 Score=44.47 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=19.9
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..|..++.|.|+. +-++||||||.+.
T Consensus 37 ~aip~il~g~dvi--~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDVA--GQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcEE--EECCCCchHHHHH
Confidence 4566788999854 5669999999753
No 168
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=44.27 E-value=12 Score=44.73 Aligned_cols=26 Identities=42% Similarity=0.635 Sum_probs=20.8
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..|..+++|.| |++..+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677889998 567789999999774
No 169
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=44.15 E-value=18 Score=45.87 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=28.8
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 73 PHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 357877655555555 699999999999999999876
No 170
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.03 E-value=8 Score=46.68 Aligned_cols=66 Identities=27% Similarity=0.361 Sum_probs=40.3
Q ss_pred HHHHhcCcceeEEeeccCCCCCceEecCCC----------CCCccchhhHHHH---------HHHHHHhhhccCCCeEEE
Q 001666 474 IRSVLDGYNVCIFAYGQTGSGKTFTMTGPK----------ELTEESLGVNYRA---------LNDLFLISNQRRDTIHYD 534 (1035)
Q Consensus 474 V~svLdG~N~~IfAYGqTGSGKTyTM~G~~----------~~~~~~~GIipRa---------l~dLF~~~~~~~~~~~~~ 534 (1035)
|..+.+|.+. +|++|||||||+...+|- .......|..|++ +.+||.... ...|.
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~----k~~~~ 178 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR----KFSYL 178 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH----hhccc
Confidence 4555677765 899999999999987741 0001111122332 345665443 34677
Q ss_pred EEEEEEEEecC
Q 001666 535 IFVQMLEIYNE 545 (1035)
Q Consensus 535 V~vS~lEIYnE 545 (1035)
-.+-.+.+|+.
T Consensus 179 s~~~~~~~ygg 189 (482)
T KOG0335|consen 179 SGMKSVVVYGG 189 (482)
T ss_pred ccceeeeeeCC
Confidence 77778888976
No 171
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=43.69 E-value=13 Score=47.10 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=15.2
Q ss_pred ceeEEeeccCCCCCceEe
Q 001666 482 NVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM 499 (1035)
|-.++.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 556777899999999887
No 172
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=43.38 E-value=2.8e+02 Score=29.61 Aligned_cols=19 Identities=16% Similarity=0.517 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhhhhhc
Q 001666 384 SSYQKVLEENRKLYNQVQD 402 (1035)
Q Consensus 384 ~~~~~~~~e~r~L~n~~qd 402 (1035)
..|++.-.+|++.|+.+-|
T Consensus 162 ~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 162 QKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555677778887754
No 173
>PRK10536 hypothetical protein; Provisional
Probab=42.80 E-value=12 Score=42.13 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=28.8
Q ss_pred EEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 450 SFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 450 ~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.|.|..|-+-+..|..... .+.+ +..+++.|++||||||....
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La~a 93 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWISAA 93 (262)
T ss_pred hcCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHHHH
Confidence 4556666666666655443 2333 34889999999999987643
No 174
>PRK13764 ATPase; Provisional
Probab=42.71 E-value=11 Score=47.11 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.0
Q ss_pred eeEEeeccCCCCCceEecC
Q 001666 483 VCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~G 501 (1035)
..|+..|+||||||+++..
T Consensus 258 ~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4488999999999999854
No 175
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=42.68 E-value=18 Score=45.92 Aligned_cols=36 Identities=33% Similarity=0.466 Sum_probs=28.8
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||.........++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 457776655555555 599999999999999999886
No 176
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=42.47 E-value=17 Score=46.04 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=28.0
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 457776654444443 689999999999999999886
No 177
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=42.10 E-value=7.4 Score=38.19 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.6
Q ss_pred EEeeccCCCCCceEec
Q 001666 485 IFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~ 500 (1035)
|+-+|++|+|||+.+.
T Consensus 2 vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997763
No 178
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=41.95 E-value=19 Score=45.68 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=27.6
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 347766544444443 689999999999999999886
No 179
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=41.92 E-value=21 Score=45.29 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=27.8
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 347776544444444 699999999999999999886
No 180
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=41.83 E-value=20 Score=45.47 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=27.6
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||........+++ .|.|-||+.-|.+|||||.|.
T Consensus 69 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 69 PHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 347776544444444 689999999999999999886
No 181
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=41.19 E-value=10 Score=40.12 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=15.3
Q ss_pred CcceeEEeeccCCCCCceEec
Q 001666 480 GYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 480 G~N~~IfAYGqTGSGKTyTM~ 500 (1035)
-....||..||.|||||+++.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 345678999999999987763
No 182
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=41.06 E-value=21 Score=45.18 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=28.1
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 67 PHIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 347776654455544 699999999999999999886
No 183
>PLN03025 replication factor C subunit; Provisional
Probab=40.94 E-value=14 Score=42.00 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=21.8
Q ss_pred hHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 463 QAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 463 QeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
|+++...++.++. .|.-.-++-||+.|+|||++...
T Consensus 18 ~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 18 NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHHH
Confidence 4444444433332 23323356699999999998864
No 184
>PHA00729 NTP-binding motif containing protein
Probab=40.59 E-value=20 Score=39.54 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=21.5
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.+++.+..|-=..|+.+|.+|+||||....
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 345555544335799999999999987654
No 185
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=40.37 E-value=14 Score=47.15 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=24.3
Q ss_pred chHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 462 TQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 462 tQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.|+.+-.....+.+.+-.+.-..++-||++|+|||++...
T Consensus 32 GQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 32 GQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred CcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 3455443322333333344445678899999999988743
No 186
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=40.08 E-value=23 Score=44.96 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=28.5
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 347776655555554 799999999999999999886
No 187
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=39.99 E-value=11 Score=39.50 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceEe
Q 001666 483 VCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM 499 (1035)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999865
No 188
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=39.41 E-value=18 Score=43.74 Aligned_cols=35 Identities=6% Similarity=0.194 Sum_probs=22.5
Q ss_pred cCCCcceeeEEecCCccccHHHHHHHHHHH--HHhhccccC
Q 001666 697 LGGQAKTLMFVHISPELEALGETISTLKFA--ERVATVELG 735 (1035)
Q Consensus 697 LGGnskT~mI~~ISP~~~~~~ETLsTLrFA--~Rak~I~~~ 735 (1035)
+.-..+..+|+|++..... +..|.+| .|..-|++.
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~ 356 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIE 356 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEec
Confidence 4557889999999987654 4456555 344444443
No 189
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.91 E-value=1.7e+02 Score=31.27 Aligned_cols=19 Identities=32% Similarity=0.414 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhhhhhc
Q 001666 384 SSYQKVLEENRKLYNQVQD 402 (1035)
Q Consensus 384 ~~~~~~~~e~r~L~n~~qd 402 (1035)
....++..||+.|-..+.+
T Consensus 165 ~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 165 EKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555667666555543
No 190
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=38.89 E-value=22 Score=45.11 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=27.9
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
--||.........++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 67 PHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 347776554444444 799999999999999999876
No 191
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=38.74 E-value=14 Score=41.24 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=16.5
Q ss_pred cCcceeEEeeccCCCCCceEec
Q 001666 479 DGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 479 dG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.|...-++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3444447889999999997763
No 192
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.74 E-value=20 Score=42.76 Aligned_cols=18 Identities=44% Similarity=0.525 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCCceEec
Q 001666 483 VCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~ 500 (1035)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 568889999999999984
No 193
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.67 E-value=18 Score=43.58 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=20.3
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..|..++.|.++ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 467778899985 55579999999764
No 194
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=38.32 E-value=15 Score=44.06 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=20.6
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 46778899999765 459999999664
No 195
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=38.30 E-value=23 Score=45.05 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=28.2
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 457776655555544 699999999999999999876
No 196
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=38.16 E-value=11 Score=41.52 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.4
Q ss_pred eEEeeccCCCCCceEec
Q 001666 484 CIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~ 500 (1035)
-++-||++|+|||++..
T Consensus 44 ~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVAR 60 (261)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46779999999998874
No 197
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=37.82 E-value=23 Score=45.18 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=27.5
Q ss_pred hHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 465 EVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 465 eVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
.||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 73 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 47776544445443 799999999999999999886
No 198
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.69 E-value=2.3e+02 Score=24.97 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001666 337 IELQQRDIVELKQTLHTAKAGMQFLQVKY 365 (1035)
Q Consensus 337 ~~~~~~~~~~l~~~l~~~k~~~~~~~~~~ 365 (1035)
++++..++++|...+..+..++..++...
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666655555433
No 199
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.29 E-value=12 Score=44.13 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=15.9
Q ss_pred eeEEeeccCCCCCceEecC
Q 001666 483 VCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~G 501 (1035)
..|.-+|+||+|||+|+..
T Consensus 138 ~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4666799999999999854
No 200
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=37.27 E-value=31 Score=41.60 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=17.0
Q ss_pred cceeEEeeccCCCCCceEecC
Q 001666 481 YNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.-..|+-+|.+|+|||+|..-
T Consensus 94 ~p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 345788899999999999743
No 201
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.00 E-value=14 Score=42.61 Aligned_cols=16 Identities=50% Similarity=0.667 Sum_probs=13.3
Q ss_pred eeEEeeccCCCCCceE
Q 001666 483 VCIFAYGQTGSGKTFT 498 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyT 498 (1035)
+-|+..|+||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 4578899999999963
No 202
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.90 E-value=22 Score=42.51 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=15.0
Q ss_pred eEEeeccCCCCCceEecC
Q 001666 484 CIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~G 501 (1035)
+|+-.|+||+|||+|+..
T Consensus 223 ~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAK 240 (424)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566669999999999864
No 203
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=36.80 E-value=34 Score=43.25 Aligned_cols=37 Identities=32% Similarity=0.671 Sum_probs=27.6
Q ss_pred hHHHhhHHHHHHHh--cCcceeEEeeccCCCCCceEecC
Q 001666 465 EVFSDTRSLIRSVL--DGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 465 eVf~~v~pLV~svL--dG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
.-|.++...++.++ +|--+|+..-|..|||||.|+.+
T Consensus 403 ~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~ 441 (767)
T KOG1514|consen 403 NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLE 441 (767)
T ss_pred HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHH
Confidence 34555555556555 46777999999999999999865
No 204
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=36.79 E-value=1.4e+02 Score=33.58 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 001666 326 SKTRLLKQQMLIELQQRDIVELKQTLHTA---KA----GMQFLQ---VKYMEDLDTLGNQLHGLAHAASSYQKVLEENRK 395 (1035)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---k~----~~~~~~---~~~~~~~~~l~~~~~~l~~~~~~~~~~~~e~r~ 395 (1035)
+...+..-+.+-+++++.|.+|.+.-+.+ |. .++.+. .+--+..+-|+..+.+-..++...+++..|-|.
T Consensus 96 Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEard 175 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARD 175 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444445566677777777776543322 11 111111 122233334555555555566666666666555
Q ss_pred hhhhh
Q 001666 396 LYNQV 400 (1035)
Q Consensus 396 L~n~~ 400 (1035)
|..++
T Consensus 176 lrqel 180 (333)
T KOG1853|consen 176 LRQEL 180 (333)
T ss_pred HHHHH
Confidence 54433
No 205
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=36.22 E-value=17 Score=43.04 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=28.5
Q ss_pred chHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceE
Q 001666 462 TQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFT 498 (1035)
Q Consensus 462 tQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyT 498 (1035)
.|+.+...-.+|=+.+-.|.=...+-||+.|+|||..
T Consensus 28 GQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4677776656666666677778889999999999964
No 206
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=36.09 E-value=27 Score=40.21 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCCceEec
Q 001666 483 VCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~ 500 (1035)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 466677999999999984
No 207
>PHA02653 RNA helicase NPH-II; Provisional
Probab=35.80 E-value=26 Score=44.50 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=19.2
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceE
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFT 498 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyT 498 (1035)
.++..+++|.++ +..|+||||||..
T Consensus 171 qil~~i~~gkdv--Iv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRKPV--VLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCCCE--EEECCCCCCchhH
Confidence 355666777755 7899999999975
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=35.68 E-value=29 Score=40.38 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=17.1
Q ss_pred cceeEEeeccCCCCCceEec
Q 001666 481 YNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~ 500 (1035)
...+|.-.|.+|+|||.|+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 35688899999999999884
No 209
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=35.68 E-value=72 Score=39.26 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=27.2
Q ss_pred HhcCCCCccCCCCcchhhhhhccCCCcceeeEEecCCccccHHHHH
Q 001666 675 LAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELEALGETI 720 (1035)
Q Consensus 675 La~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETL 720 (1035)
++....-.-.-.|.|.|++-..+ +.+++++|=...|. ++-+|+
T Consensus 630 ~a~e~~e~~~q~SSlVWi~tSt~-~~skv~iiDAnqPg--ni~d~F 672 (832)
T KOG2077|consen 630 LAEEQKELKNQESSLVWICTSTH-SASKVLIIDANQPG--NILDSF 672 (832)
T ss_pred HhhhhhhhhccccceEEEEecCC-CcceEEEEecCCCC--chhhcc
Confidence 33333444445588888886555 56888888888884 454543
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=35.57 E-value=20 Score=42.02 Aligned_cols=46 Identities=22% Similarity=0.479 Sum_probs=27.2
Q ss_pred eEEE-ec-eeeCCCCchHhHHHhhHHHHHHHhcC---cceeEEeeccCCCCCceE
Q 001666 449 KSFS-FN-KVFGPNATQAEVFSDTRSLIRSVLDG---YNVCIFAYGQTGSGKTFT 498 (1035)
Q Consensus 449 k~F~-FD-~VF~~~atQeeVf~~v~pLV~svLdG---~N~~IfAYGqTGSGKTyT 498 (1035)
+.|. |+ .||+.+...+++. .-+.+...| .+..+.-.|++|||||..
T Consensus 44 ~~y~~F~~~~~G~~~~i~~lv----~~l~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 44 KRYRFFDHDFFGMEEAIERFV----NYFKSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred eeccccchhccCcHHHHHHHH----HHHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 3444 34 6777544433333 333444343 456788899999999843
No 211
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.49 E-value=3.2e+02 Score=34.34 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=17.5
Q ss_pred HHHHHhchhhHHHHHHHhhhcCCc
Q 001666 69 EEFRLGLRSGIILCNVLNKVQPGA 92 (1035)
Q Consensus 69 edf~~~LrDGvILC~L~N~l~Pgs 92 (1035)
++..+..+|+-=|-+++..+-||.
T Consensus 57 DnvyEL~~~~~~li~il~~lP~~t 80 (652)
T COG2433 57 DNVYELGADKRDLIRILKRLPEGT 80 (652)
T ss_pred ccHHHHhcChhHHHHHHHhCCCCc
Confidence 457777777777888888877754
No 212
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=35.20 E-value=13 Score=43.85 Aligned_cols=17 Identities=35% Similarity=0.858 Sum_probs=14.6
Q ss_pred eEEeeccCCCCCceEec
Q 001666 484 CIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~ 500 (1035)
.|+-||.+||||||++.
T Consensus 32 ~~~iyG~sgTGKT~~~r 48 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVR 48 (438)
T ss_pred eEEEeccCCCchhHHHH
Confidence 36899999999999873
No 213
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=34.85 E-value=22 Score=45.95 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=23.9
Q ss_pred HHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 466 VFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 466 Vf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
||.....+++.+-++.+ |+..|+||||||..+
T Consensus 6 i~~~~~~i~~~l~~~~~--vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAAVLPELLTALKTAPQ--VLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHHHHHhCCC--EEEEcCCCCCHHHHH
Confidence 56666677777766544 567999999999876
No 214
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=34.72 E-value=49 Score=39.56 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=27.7
Q ss_pred eEEeeccCCCCCce-------------E-ecCCCCCCccchhhHHHHHHHHHHhhhccCC
Q 001666 484 CIFAYGQTGSGKTF-------------T-MTGPKELTEESLGVNYRALNDLFLISNQRRD 529 (1035)
Q Consensus 484 ~IfAYGqTGSGKTy-------------T-M~G~~~~~~~~~GIipRal~dLF~~~~~~~~ 529 (1035)
-|+-||+.|+|||- . |.|.+-..-...|+ -.++.||+.....+.
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV--TkiH~lFDWakkS~r 443 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV--TKIHKLFDWAKKSRR 443 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHH--HHHHHHHHHHhhccc
Confidence 47899999999983 3 34433211122233 468999998866544
No 215
>PRK06696 uridine kinase; Validated
Probab=34.69 E-value=33 Score=36.96 Aligned_cols=34 Identities=21% Similarity=0.102 Sum_probs=21.8
Q ss_pred HHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 466 VFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 466 Vf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
+.+++...|.+.-.+....|.--|.+|||||+..
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 3444433333333566677888999999999754
No 216
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=34.59 E-value=3.2e+02 Score=30.84 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 001666 364 KYMEDLDTLGNQ 375 (1035)
Q Consensus 364 ~~~~~~~~l~~~ 375 (1035)
.|...+..+...
T Consensus 259 ~~~~~i~~le~e 270 (312)
T PF00038_consen 259 EYQAEIAELEEE 270 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhhccchh
Confidence 333334333333
No 217
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.38 E-value=2.2e+02 Score=32.28 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=13.3
Q ss_pred ceeEEeeccCCCCCce
Q 001666 482 NVCIFAYGQTGSGKTF 497 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTy 497 (1035)
---++.||+.|+|||.
T Consensus 181 PKGvlLygppgtGktL 196 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTL 196 (404)
T ss_pred CcceEEecCCCCchhH
Confidence 3458899999999984
No 218
>PF05729 NACHT: NACHT domain
Probab=33.96 E-value=15 Score=36.28 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.4
Q ss_pred eEEeeccCCCCCceEec
Q 001666 484 CIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~ 500 (1035)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 36789999999998774
No 219
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=33.75 E-value=21 Score=44.24 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=20.6
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..|..+++|.|+ ++.++||||||.+.
T Consensus 38 ~~ip~~l~G~Dv--i~~ApTGSGKTlaf 63 (572)
T PRK04537 38 LTLPVALPGGDV--AGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHhCCCCE--EEEcCCCCcHHHHH
Confidence 456778999995 55779999999764
No 220
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=33.59 E-value=27 Score=42.66 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=20.0
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..|..++.|.|+ ++..+||||||.+.
T Consensus 150 ~aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCCE--EEEecCCCCccHHH
Confidence 456777899875 66679999999653
No 221
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=33.57 E-value=18 Score=40.58 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=20.1
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
-+++..+.. +--++-+|++|+|||-++.
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 455555543 4566889999999998774
No 222
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=33.48 E-value=27 Score=44.45 Aligned_cols=43 Identities=33% Similarity=0.479 Sum_probs=30.5
Q ss_pred ceeeCCCCchHhHHHh---h----HHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 454 NKVFGPNATQAEVFSD---T----RSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 454 D~VF~~~atQeeVf~~---v----~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
++-+++++-|..+|.. + ..+++.+| |.|+.|-+ +||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 4445566666666643 1 35889999 99987765 9999999853
No 223
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=33.43 E-value=27 Score=43.24 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=20.6
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.+|..+++|.|+ ++..+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 567788999986 44569999999874
No 224
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=33.42 E-value=1.4e+02 Score=32.74 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001666 344 IVELKQTLHTAKAGMQFLQVKYMEDLDTLGNQLHGLAHA 382 (1035)
Q Consensus 344 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~ 382 (1035)
+.|||+.|--+..+++.+++.-.+++...+..+..|.++
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~L 41 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDL 41 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888777777776666555544443
No 225
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=33.11 E-value=29 Score=43.84 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=27.4
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||.......+.++ .+.|-||+.-|.+|||||.|+
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 67 PHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred CcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 347766544444444 589999999999999999987
No 226
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=33.07 E-value=35 Score=38.40 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=15.2
Q ss_pred ceeEEeeccCCCCCceEecC
Q 001666 482 NVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~G 501 (1035)
..+|...|++|+|||.|..-
T Consensus 72 ~~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 34555569999999998853
No 227
>PRK11637 AmiB activator; Provisional
Probab=32.97 E-value=3.8e+02 Score=32.04 Aligned_cols=9 Identities=11% Similarity=0.409 Sum_probs=5.1
Q ss_pred CCCCccccc
Q 001666 953 SEPDSLWQC 961 (1035)
Q Consensus 953 ~~~~~~~~~ 961 (1035)
..+.|+|.+
T Consensus 405 ~~~~l~fei 413 (428)
T PRK11637 405 GRPSLYFEI 413 (428)
T ss_pred CCCeEEEEE
Confidence 345666654
No 228
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.70 E-value=20 Score=45.13 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=24.5
Q ss_pred chHhHHHhhHHHHHHHhcCc--ceeEEeeccCCCCCceEecC
Q 001666 462 TQAEVFSDTRSLIRSVLDGY--NVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 462 tQeeVf~~v~pLV~svLdG~--N~~IfAYGqTGSGKTyTM~G 501 (1035)
-|......+..++..+.-+. .-+++-||++|+|||.++.-
T Consensus 88 ~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 88 VHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKI 129 (637)
T ss_pred CcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHH
Confidence 34444444544555444322 12478899999999998753
No 229
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.62 E-value=4.5e+02 Score=28.73 Aligned_cols=36 Identities=6% Similarity=0.076 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001666 334 QMLIELQQRDIVELKQTLHTAKAGMQFLQVKYMEDL 369 (1035)
Q Consensus 334 ~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~ 369 (1035)
...+..++.++++|+.+|..+..+........++.+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~ 127 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKV 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555556666666666555555444444444433
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=32.33 E-value=29 Score=38.55 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=18.8
Q ss_pred HHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 471 RSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 471 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
+.++..+..|.+++ -+|++|+|||...
T Consensus 12 ~~~l~~l~~g~~vL--L~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVH--LRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEE--EEcCCCCCHHHHH
Confidence 33445555676665 4899999999765
No 231
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=32.31 E-value=1.7e+02 Score=33.29 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=64.0
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCCHHHHHHhchhhHHHHHHHhhhcCCcccccccCCCCccccCCccccccchhhhhHHHH
Q 001666 45 EAAGWLRKSVGVVVGKDLPAQPSEEEFRLGLRSGIILCNVLNKVQPGAVAKVVEGPCDSVVIPDGAALSAFQYFENVRNF 124 (1035)
Q Consensus 45 ea~~WL~~~ig~~~~~~lp~~~seedf~~~LrDGvILC~L~N~l~PgsV~KI~~~~~~~~~~~~~a~~~~F~~~ENI~~F 124 (1035)
-+..||.+.+ .++.+- .-.+.+-|-||.||-+|..++.---+ .+.+- +.+..-+..-+..-
T Consensus 94 vLi~WiN~~L---~~erIv----Vr~LeEDlfDGqilqkL~ekL~~~kl-ev~ev-----------tqse~~QkqKLq~V 154 (365)
T KOG3631|consen 94 VLIDWINDVL---VPERIV----VRSLEEDLFDGQILQKLFEKLAALKL-EVAEV-----------TQSEIGQKQKLQTV 154 (365)
T ss_pred HHHHHHHHhh---cchhhh----HHhhHHhhhhhHHHHHHHHHHHhhhc-cchhh-----------hhhhHHHHHHHHHH
Confidence 4556666642 233322 34588889999999999999873211 11111 12445566777788
Q ss_pred HHHH-HHcCCCCccc---chhhccccchhHHHHHHHHHHHhhh
Q 001666 125 LVAA-EELGLPTFEA---SDLEQGGKSAMARIVNCVLALKSYS 163 (1035)
Q Consensus 125 L~ac-~~lGlp~Fet---~DL~egkn~~~~kVv~cL~aL~~~~ 163 (1035)
|.++ +.+++|..++ .|+.-+|+ +..++.-|.+|+.++
T Consensus 155 leavnr~L~~~~~q~kWsvdsIh~Kd--l~ailhLLVaLa~~f 195 (365)
T KOG3631|consen 155 LEAVNRSLQLPEWQAKWSVDSIHNKD--LVAILHLLVALAKHF 195 (365)
T ss_pred HHHHHHHhcCchhhhccchhhhccch--HHHHHHHHHHHHHHc
Confidence 8888 5799995332 45555555 899999999999875
No 232
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.22 E-value=1.7e+02 Score=35.35 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhcC
Q 001666 324 EESKTRLLKQQMLIELQQRDIVELKQTLHTAKAGMQFLQVKYMEDLDTLGNQLHGLAHAASSYQKVLEENRKLYNQVQDL 403 (1035)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~e~r~L~n~~qdl 403 (1035)
+++...+......++..+.++.+|+..+...+..-. ......+....+......+....+.+.++.++...|.++++..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555444444455555555555555433332100 0000111112222222223333334444444555666777766
Q ss_pred --CCCEEEEEEeCC
Q 001666 404 --KGNIRVYCRVRP 415 (1035)
Q Consensus 404 --kGnIRV~~RVRP 415 (1035)
.+.|.|.=++.|
T Consensus 409 ~~~~~I~v~~~vyp 422 (451)
T PF03961_consen 409 YKEARIKVRKRVYP 422 (451)
T ss_pred ccceEEEECCEEEC
Confidence 345555555666
No 233
>PHA02244 ATPase-like protein
Probab=32.08 E-value=36 Score=40.30 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=16.8
Q ss_pred HHHhcCcceeEEeeccCCCCCceEec
Q 001666 475 RSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 475 ~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.-+-.|.+++| +|+||+|||+...
T Consensus 114 r~l~~~~PVLL--~GppGtGKTtLA~ 137 (383)
T PHA02244 114 KIVNANIPVFL--KGGAGSGKNHIAE 137 (383)
T ss_pred HHHhcCCCEEE--ECCCCCCHHHHHH
Confidence 33345666544 8999999997764
No 234
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=32.08 E-value=24 Score=40.12 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=21.2
Q ss_pred hHHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 470 TRSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 470 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
+.+++..++.+. ..|+-.|.||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 456666666544 345567999999998764
No 235
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=32.05 E-value=18 Score=40.81 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=17.6
Q ss_pred cCcceeEEeeccCCCCCceE
Q 001666 479 DGYNVCIFAYGQTGSGKTFT 498 (1035)
Q Consensus 479 dG~N~~IfAYGqTGSGKTyT 498 (1035)
.|++-+||..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 48899999999999999853
No 236
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=31.72 E-value=29 Score=43.66 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=20.4
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..|..++.|.+ |++.+|||||||.+.
T Consensus 35 ~ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 35 ECIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 35667788987 567779999999864
No 237
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=31.65 E-value=23 Score=44.52 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=19.1
Q ss_pred HHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 474 IRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 474 V~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
|..++.... .++-.|++|+|||||+..
T Consensus 166 v~~~l~~~~-~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 166 VSFALSSKD-LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHhcCCC-eEEEEcCCCCCHHHHHHH
Confidence 444554323 356899999999999864
No 238
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=31.63 E-value=24 Score=42.84 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=29.0
Q ss_pred EEEeceeeCCCCchHhHHHhhHHHHHH-Hhc--C--cceeEEeeccCCCCCceEec
Q 001666 450 SFSFNKVFGPNATQAEVFSDTRSLIRS-VLD--G--YNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 450 ~F~FD~VF~~~atQeeVf~~v~pLV~s-vLd--G--~N~~IfAYGqTGSGKTyTM~ 500 (1035)
..+||.|.+.+...+++.+.+..+-.. .+. | ..-.|+-||++|+|||+...
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 467888877655544444322211100 111 2 22358889999999998864
No 239
>PRK00131 aroK shikimate kinase; Reviewed
Probab=31.42 E-value=21 Score=35.93 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCceEe
Q 001666 483 VCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM 499 (1035)
.+|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999764
No 240
>PRK10865 protein disaggregation chaperone; Provisional
Probab=31.32 E-value=31 Score=44.95 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=27.3
Q ss_pred EeceeeCCCCchHhHHHhhHHHHHHHhcCcc------eeEEeeccCCCCCceEe
Q 001666 452 SFNKVFGPNATQAEVFSDTRSLIRSVLDGYN------VCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 452 ~FD~VF~~~atQeeVf~~v~pLV~svLdG~N------~~IfAYGqTGSGKTyTM 499 (1035)
-+.+|++. ...-..+...|..+..|.. +.++-+|+||+|||++.
T Consensus 566 l~~~viGQ----~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 566 LHHRVIGQ----NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred hCCeEeCC----HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 35567654 4444444444444443332 56778899999999876
No 241
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=31.15 E-value=29 Score=42.68 Aligned_cols=41 Identities=27% Similarity=0.462 Sum_probs=25.5
Q ss_pred EeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 452 SFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 452 ~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.|+.+++.+ .. ++.+...+..+...-|+-||++|+|||+.-
T Consensus 63 ~f~~iiGqs----~~---i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 63 SFDEIIGQE----EG---IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CHHHeeCcH----HH---HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 466666643 22 233333345556667788999999998643
No 242
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.07 E-value=32 Score=44.19 Aligned_cols=18 Identities=39% Similarity=0.409 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCCceEec
Q 001666 483 VCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~ 500 (1035)
.+|.-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 478889999999999984
No 243
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=31.02 E-value=30 Score=43.14 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=20.1
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..|..++.|.++++. ++||||||.+.
T Consensus 32 ~ai~~il~g~dvlv~--apTGsGKTl~y 57 (607)
T PRK11057 32 EIIDAVLSGRDCLVV--MPTGGGKSLCY 57 (607)
T ss_pred HHHHHHHcCCCEEEE--cCCCchHHHHH
Confidence 456777899987654 69999999753
No 244
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=30.99 E-value=40 Score=39.51 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=21.4
Q ss_pred HHHHHHhcCcc---eeEEeeccCCCCCceEecC
Q 001666 472 SLIRSVLDGYN---VCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 472 pLV~svLdG~N---~~IfAYGqTGSGKTyTM~G 501 (1035)
|.+...|.|.. .|||+ |+||||||.-|.-
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFlsE 292 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLSE 292 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEehH
Confidence 55667777764 45654 9999999998854
No 245
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=30.91 E-value=18 Score=39.56 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=16.9
Q ss_pred ceeEEeeccCCCCCceEecC
Q 001666 482 NVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~G 501 (1035)
...++-||..|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45689999999999998754
No 246
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=30.70 E-value=35 Score=43.92 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=28.0
Q ss_pred HhHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 464 AEVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 464 eeVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-.||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 67 PHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 357776554445544 699999999999999999886
No 247
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=30.55 E-value=27 Score=40.75 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.5
Q ss_pred EEeeccCCCCCceEecC
Q 001666 485 IFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~G 501 (1035)
++.+|.||||||+++.=
T Consensus 2 ~lv~g~tGsGKt~~~vi 18 (384)
T cd01126 2 VLVFAPTRSGKGVGFVI 18 (384)
T ss_pred eeEecCCCCCCccEEEc
Confidence 57899999999998753
No 248
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.05 E-value=5.8e+02 Score=27.65 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 001666 382 AASSYQKVLEENRKLYNQV 400 (1035)
Q Consensus 382 ~~~~~~~~~~e~r~L~n~~ 400 (1035)
....|.++..||..||...
T Consensus 112 L~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 112 LEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666777777666543
No 249
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=29.96 E-value=27 Score=36.79 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=18.2
Q ss_pred HHHhcCc---ceeEEeeccCCCCCceEe
Q 001666 475 RSVLDGY---NVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 475 ~svLdG~---N~~IfAYGqTGSGKTyTM 499 (1035)
+.+|.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445443 567889999999998654
No 250
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=29.92 E-value=29 Score=40.35 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=22.4
Q ss_pred hHHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 470 TRSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 470 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
+..++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 455666666654 678888999999998764
No 251
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.52 E-value=37 Score=40.82 Aligned_cols=19 Identities=42% Similarity=0.662 Sum_probs=15.6
Q ss_pred ceeEEeeccCCCCCceEec
Q 001666 482 NVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~ 500 (1035)
...|+..|++|+|||+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467778999999999874
No 252
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=29.49 E-value=38 Score=42.99 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=27.2
Q ss_pred CCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 458 GPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 458 ~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.+...|+.+..++ ....-.++..-++..|+||||||.+..
T Consensus 261 ~lt~~Q~~ai~~I---~~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 261 ELTGAQKRVVAEI---LADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred CCCHHHHHHHHHH---HHhhhccCCceEEEECCCCCcHHHHHH
Confidence 4666777766654 223334555668899999999997654
No 253
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=29.49 E-value=38 Score=43.63 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=25.0
Q ss_pred hHhHHHhhHHHHHHHhcCc------ceeEEeeccCCCCCceEe
Q 001666 463 QAEVFSDTRSLIRSVLDGY------NVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 463 QeeVf~~v~pLV~svLdG~------N~~IfAYGqTGSGKTyTM 499 (1035)
|++.-..+...|.....|. .+.++-+|+||+|||++.
T Consensus 463 Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 4555555545555544444 357899999999999876
No 254
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=29.48 E-value=22 Score=34.69 Aligned_cols=17 Identities=47% Similarity=0.681 Sum_probs=13.9
Q ss_pred EEeeccCCCCCceEecC
Q 001666 485 IFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~G 501 (1035)
++-||++|+|||+.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 56799999999987643
No 255
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=28.95 E-value=3.2e+02 Score=34.68 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHh
Q 001666 262 SMLSKVMEEFERRLANQNELI 282 (1035)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~~~ 282 (1035)
..|+.+..+-|.||..+.+.+
T Consensus 111 e~Ls~L~~EqEerL~ELE~~l 131 (617)
T PF15070_consen 111 EQLSRLNQEQEERLAELEEEL 131 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777665443
No 256
>PRK09039 hypothetical protein; Validated
Probab=28.91 E-value=9e+02 Score=28.33 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhc
Q 001666 258 ITVESMLSKVMEEFERRLANQNELIKT 284 (1035)
Q Consensus 258 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ 284 (1035)
+++...|+.-+..++..|...+..+..
T Consensus 38 ~~~q~fLs~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 38 VVAQFFLSREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 566777777777777777666555433
No 257
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=28.89 E-value=21 Score=40.06 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=18.6
Q ss_pred cCcceeEEeeccCCCCCceEe
Q 001666 479 DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 479 dG~N~~IfAYGqTGSGKTyTM 499 (1035)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999998655
No 258
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=28.86 E-value=25 Score=40.59 Aligned_cols=16 Identities=44% Similarity=0.650 Sum_probs=13.3
Q ss_pred EEeeccCCCCCceEec
Q 001666 485 IFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~ 500 (1035)
...||+|||||++.+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3569999999998774
No 259
>PF13173 AAA_14: AAA domain
Probab=28.85 E-value=19 Score=35.18 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.7
Q ss_pred eEEeeccCCCCCceEec
Q 001666 484 CIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~ 500 (1035)
.++-+|+.|+|||+.|.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57889999999998874
No 260
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=28.75 E-value=23 Score=36.32 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceE
Q 001666 485 IFAYGQTGSGKTFT 498 (1035)
Q Consensus 485 IfAYGqTGSGKTyT 498 (1035)
|+.+|..|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999865
No 261
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=28.73 E-value=36 Score=40.55 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.0
Q ss_pred cCCCeEEEcCCHHHHHHHHHh
Q 001666 572 VPDANLVPVSSTNDVIEMMNL 592 (1035)
Q Consensus 572 V~glt~v~V~S~eev~~ll~~ 592 (1035)
+-|+....|.++.|+...+..
T Consensus 258 im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 258 IMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred HhCCceEEecCHHHHHHHHHH
Confidence 567788889999999888754
No 262
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.61 E-value=19 Score=43.78 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=16.1
Q ss_pred eeEEeeccCCCCCceEecC
Q 001666 483 VCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~G 501 (1035)
.+|.-.|+||+|||+|+.-
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4678899999999999853
No 263
>PRK04328 hypothetical protein; Provisional
Probab=28.53 E-value=36 Score=37.50 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=21.0
Q ss_pred HHHHHHhcC---cceeEEeeccCCCCCce
Q 001666 472 SLIRSVLDG---YNVCIFAYGQTGSGKTF 497 (1035)
Q Consensus 472 pLV~svLdG---~N~~IfAYGqTGSGKTy 497 (1035)
+-++.+|.| ...+++-+|.+|+|||.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 346777876 57889999999999974
No 264
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=28.44 E-value=19 Score=31.88 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceEe
Q 001666 485 IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM 499 (1035)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999766
No 265
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=28.38 E-value=23 Score=35.17 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceEe
Q 001666 485 IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM 499 (1035)
|+-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998653
No 266
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.37 E-value=2.6e+02 Score=24.50 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001666 327 KTRLLKQQMLIELQQRDIVELKQTLHTAKAGMQFLQ 362 (1035)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~ 362 (1035)
...+.+...-++.+++++++++..++.++..++.+-
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666777777766666665554443
No 267
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=28.34 E-value=18 Score=42.23 Aligned_cols=47 Identities=30% Similarity=0.478 Sum_probs=31.0
Q ss_pred CeEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
...|.|+.|-+. +++- ..|+..+.+-.=+-|+-+|.+|||||+.+-+
T Consensus 11 ~~~~pf~~ivGq----~~~k---~al~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 11 RPVFPFTAIVGQ----EEMK---LALILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCCHHHHhCh----HHHH---HHHHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 347888888774 3322 3444555543334578999999999988743
No 268
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=28.30 E-value=36 Score=36.43 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=21.5
Q ss_pred HHHHHHhcC---cceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDG---YNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG---~N~~IfAYGqTGSGKTyTM 499 (1035)
+-++.++.| ...++.-+|++|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 446777775 4567889999999999765
No 269
>PRK07261 topology modulation protein; Provisional
Probab=28.17 E-value=24 Score=36.59 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceEe
Q 001666 485 IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM 499 (1035)
|+-.|.+|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998654
No 270
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=28.16 E-value=31 Score=42.20 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=29.8
Q ss_pred EEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 450 SFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 450 ~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.+.|+.+++.+..=..+.+.+ ..+ ...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~----~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQA----RVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHHH----HHH-hCcCCCEEEECCCCccHHHHH
Confidence 367788877655444444443 322 256778899999999998654
No 271
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=27.90 E-value=26 Score=43.02 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=24.4
Q ss_pred EEeeccCCCCCceEecCCCC--CCccchhhHHHHHHHHHHhhhc
Q 001666 485 IFAYGQTGSGKTFTMTGPKE--LTEESLGVNYRALNDLFLISNQ 526 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~G~~~--~~~~~~GIipRal~dLF~~~~~ 526 (1035)
||..|+|.|||||--.---. ...---|=+-....++|...+.
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 89999999999996532100 0011123344455677776543
No 272
>PRK13767 ATP-dependent helicase; Provisional
Probab=27.80 E-value=30 Score=45.12 Aligned_cols=25 Identities=44% Similarity=0.557 Sum_probs=19.2
Q ss_pred HHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 473 LIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 473 LV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.+..+++|.|+.| ..+||||||.+.
T Consensus 40 Ai~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 40 AIPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 4556688998766 459999999863
No 273
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=27.78 E-value=2e+02 Score=37.05 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001666 327 KTRLLKQQMLIELQQRDIVELKQTLHTAKAGMQFLQVKYMEDLDTLGNQLHGLA 380 (1035)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~ 380 (1035)
...|+|+......--+.|++++......+..+..++++.++++..+.+++..+.
T Consensus 353 ~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 353 LNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 444666655555555667777777777777788888888888888887765443
No 274
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=27.64 E-value=27 Score=38.78 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=26.2
Q ss_pred eCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 457 FGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 457 F~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
|.++++|....+....+-+. .-....|+..|.||+|||.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 8 FFPDAAQTKALELEAKGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCcHHHHHHHHHHHHHhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 34566666655544444332 234456778999999999775
No 275
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.55 E-value=41 Score=37.98 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=21.6
Q ss_pred HHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 471 RSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 471 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.||+ ..+.--+..+-.||+|++|||.++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3444 455666778889999999999876
No 276
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=27.54 E-value=20 Score=42.46 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
-++.+|.||||||..|
T Consensus 44 h~~i~g~tGsGKt~~i 59 (410)
T cd01127 44 HTMIIGTTGTGKTTQI 59 (410)
T ss_pred cEEEEcCCCCCHHHHH
Confidence 4788999999999765
No 277
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=27.53 E-value=57 Score=42.02 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=29.1
Q ss_pred HhHHHh--hHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 464 AEVFSD--TRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 464 eeVf~~--v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
..-|+. +..+++++-+|.+-.+++. .||+|||+|-+-
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 445654 5789999999999965554 699999999864
No 278
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=27.13 E-value=21 Score=36.50 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceEec
Q 001666 483 VCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~ 500 (1035)
...+-||.+|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 345678999999998774
No 279
>PTZ00110 helicase; Provisional
Probab=27.08 E-value=32 Score=42.44 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=19.5
Q ss_pred HHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 473 LIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 473 LV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.+..++.|.|+. +.++||||||.+.
T Consensus 160 aip~~l~G~dvI--~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDMI--GIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCEE--EEeCCCChHHHHH
Confidence 456678999874 5679999999764
No 280
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.04 E-value=2e+02 Score=35.12 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001666 334 QMLIELQQRDIVELKQTLHTAKAGMQ 359 (1035)
Q Consensus 334 ~~~~~~~~~~~~~l~~~l~~~k~~~~ 359 (1035)
+..+.++|....||+.+|..++.+++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544
No 281
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=26.99 E-value=42 Score=42.95 Aligned_cols=37 Identities=30% Similarity=0.261 Sum_probs=24.0
Q ss_pred hHhHHHhhHHHHHHHhcCc------ceeEEeeccCCCCCceEe
Q 001666 463 QAEVFSDTRSLIRSVLDGY------NVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 463 QeeVf~~v~pLV~svLdG~------N~~IfAYGqTGSGKTyTM 499 (1035)
|++.-+.+...|.....|. .+.++-+|+||+|||++.
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 4555555544444444444 245788999999999765
No 282
>PTZ00014 myosin-A; Provisional
Probab=26.95 E-value=47 Score=43.14 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=27.3
Q ss_pred hHHHhhHHHHHHHh-cCcceeEEeeccCCCCCceEe
Q 001666 465 EVFSDTRSLIRSVL-DGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 465 eVf~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 499 (1035)
-||.......+.++ .+.|-||+.-|.+|||||.+.
T Consensus 165 HifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 165 HVFTTARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 37776655555554 699999999999999999764
No 283
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.92 E-value=6.8e+02 Score=25.94 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhh
Q 001666 364 KYMEDLDTLGNQLHG 378 (1035)
Q Consensus 364 ~~~~~~~~l~~~~~~ 378 (1035)
.+.+++..+...+..
T Consensus 120 ~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 120 ELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 284
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=26.85 E-value=43 Score=38.97 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=21.0
Q ss_pred HHHHhcCcceeEEeeccCCCCCceEe
Q 001666 474 IRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 474 V~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
++.+.+|.+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 45567888777888899999999874
No 285
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=26.84 E-value=21 Score=43.46 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHhhcCccccc
Q 001666 263 MLSKVMEEFERRLANQNELIKTTPKTIQ 290 (1035)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1035)
+.++-.+|.|+||..|.++....+..|.
T Consensus 387 ~S~rkLeEyErrLl~QEqqt~Kll~qyq 414 (495)
T PF12004_consen 387 MSHRKLEEYERRLLSQEQQTQKLLLQYQ 414 (495)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567888999999888876554444443
No 286
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.70 E-value=3.8e+02 Score=34.92 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHhhhhh
Q 001666 149 MARIVNCVLALKSYSEW 165 (1035)
Q Consensus 149 ~~kVv~cL~aL~~~~~~ 165 (1035)
.-.-++|+.++++++..
T Consensus 266 ~l~~lD~l~a~a~~a~~ 282 (771)
T TIGR01069 266 EFDFLDSLQARARYAKA 282 (771)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45557888888887753
No 287
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=26.49 E-value=41 Score=38.49 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.2
Q ss_pred hcCcceeEEeeccCCCCCceEecC
Q 001666 478 LDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 478 LdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
-...+..++-||+.|||||.+|.-
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHHH
Confidence 456777899999999999999853
No 288
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=26.45 E-value=23 Score=40.05 Aligned_cols=59 Identities=31% Similarity=0.525 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCC----ccCCC-Ccch-hhhhhcc----CCCcceeeEEecCCccccHHHHHHHHHHHHHhhccccCc
Q 001666 670 DVIASLAQKNAH----VPYRN-SKLT-QLLQDSL----GGQAKTLMFVHISPELEALGETISTLKFAERVATVELGA 736 (1035)
Q Consensus 670 ~VI~ALa~k~~h----IPYRd-SKLT-~LLqdsL----GGnskT~mI~~ISP~~~~~~ETLsTLrFA~Rak~I~~~~ 736 (1035)
-|++|||....- =||-- -++| .-||+-+ ..-++|++++| ++.+|. ++.|.|+.-..-|.
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVT-----HDidEA---~kLadri~vm~~G~ 213 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT-----HDIDEA---LKLADRIAVMDAGE 213 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEe-----cCHHHH---HhhhceEEEecCCe
Confidence 477888865432 24421 1112 1233322 34578998887 677775 67899887665443
No 289
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=26.38 E-value=42 Score=36.27 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=20.7
Q ss_pred HHHHHHhcCc---ceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGY---NVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~---N~~IfAYGqTGSGKTyTM 499 (1035)
+-++.++.|- ..+++.+|.+|||||+-.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 4466777643 567888899999998654
No 290
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=26.35 E-value=27 Score=35.98 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=12.6
Q ss_pred EEeeccCCCCCceEe
Q 001666 485 IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM 499 (1035)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998544
No 291
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=26.26 E-value=46 Score=39.60 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=46.8
Q ss_pred CeEEEeceeeCCCCchHhHHHhh-HHHHHHHhc--C--cceeEEeeccCCCCCceEe------cCCC-------CCCccc
Q 001666 448 RKSFSFNKVFGPNATQAEVFSDT-RSLIRSVLD--G--YNVCIFAYGQTGSGKTFTM------TGPK-------ELTEES 509 (1035)
Q Consensus 448 ~k~F~FD~VF~~~atQeeVf~~v-~pLV~svLd--G--~N~~IfAYGqTGSGKTyTM------~G~~-------~~~~~~ 509 (1035)
.+.+.|+.+.+.-.--..+.+.+ ..+....+. | .---+.-||+.|+|||+.. .|-. +.....
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 35677888876555545555553 466666663 2 2235777999999999863 2211 111223
Q ss_pred hhhHHHHHHHHHHhhhc
Q 001666 510 LGVNYRALNDLFLISNQ 526 (1035)
Q Consensus 510 ~GIipRal~dLF~~~~~ 526 (1035)
.|=--+.++++|.....
T Consensus 189 vGEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 189 AGEPGKLIRQRYREAAD 205 (413)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 34455778888876643
No 292
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.22 E-value=7.4e+02 Score=28.69 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=4.1
Q ss_pred CCCceEecCC
Q 001666 493 SGKTFTMTGP 502 (1035)
Q Consensus 493 SGKTyTM~G~ 502 (1035)
.+++|.++|+
T Consensus 215 ~~~~~~ly~~ 224 (314)
T PF04111_consen 215 DKTTYPLYSS 224 (314)
T ss_dssp TCEEEESS--
T ss_pred CCeEEecccC
Confidence 3455555554
No 293
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.17 E-value=30 Score=39.31 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=0.0
Q ss_pred HHHhcCcceeEEeeccCCCCCceEe
Q 001666 475 RSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 475 ~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.++-.||.--|+|.|.||.|||..|
T Consensus 35 ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 35 KSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHhcCceEEEEEeccCCccHHHHH
No 294
>PRK08118 topology modulation protein; Reviewed
Probab=26.09 E-value=28 Score=36.08 Aligned_cols=13 Identities=46% Similarity=0.685 Sum_probs=11.6
Q ss_pred EEeeccCCCCCce
Q 001666 485 IFAYGQTGSGKTF 497 (1035)
Q Consensus 485 IfAYGqTGSGKTy 497 (1035)
|+-.|+.|||||+
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 7789999999995
No 295
>PRK05580 primosome assembly protein PriA; Validated
Probab=26.00 E-value=39 Score=42.85 Aligned_cols=37 Identities=32% Similarity=0.365 Sum_probs=23.6
Q ss_pred CCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 458 GPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 458 ~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.....|.++++.+. ... ++ ..++.+|+||||||.+..
T Consensus 144 ~Lt~~Q~~ai~~i~---~~~--~~-~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 144 TLNPEQAAAVEAIR---AAA--GF-SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCHHHHHHHHHHH---hcc--CC-CcEEEECCCCChHHHHHH
Confidence 44556766665542 111 33 348899999999997653
No 296
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=25.99 E-value=41 Score=43.16 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=20.7
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..|..+++|.|+++.| +||||||.+.
T Consensus 43 ~ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 43 RAAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 4567789999976655 8999999864
No 297
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=25.70 E-value=48 Score=41.21 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=18.5
Q ss_pred HHHHhcCcceeEEeeccCCCCCceEec
Q 001666 474 IRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 474 V~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
|.-++.-. ...+-.|+.|+|||||+.
T Consensus 194 v~~~~~~k-~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 194 VSFAINNK-DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred HHHHhccC-CceEeeCCCCCCceeeHH
Confidence 44444444 445678999999999985
No 298
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.64 E-value=6.1e+02 Score=26.53 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001666 346 ELKQTLH 352 (1035)
Q Consensus 346 ~l~~~l~ 352 (1035)
.++....
T Consensus 134 ~l~~~~~ 140 (191)
T PF04156_consen 134 SLDESIK 140 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 299
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.61 E-value=4.3e+02 Score=34.19 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=6.5
Q ss_pred CCCCCceEecC
Q 001666 491 TGSGKTFTMTG 501 (1035)
Q Consensus 491 TGSGKTyTM~G 501 (1035)
.--|.|.+|.+
T Consensus 638 ~~~~~~~~~e~ 648 (861)
T PF15254_consen 638 PQHSNTRSMEE 648 (861)
T ss_pred CCCCCcccccc
Confidence 33466666665
No 300
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=25.45 E-value=25 Score=35.57 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=11.0
Q ss_pred EEeeccCCCCCceE
Q 001666 485 IFAYGQTGSGKTFT 498 (1035)
Q Consensus 485 IfAYGqTGSGKTyT 498 (1035)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999844
No 301
>PRK01172 ski2-like helicase; Provisional
Probab=25.42 E-value=42 Score=42.29 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=17.9
Q ss_pred HHHHHhcCcceeEEeeccCCCCCceE
Q 001666 473 LIRSVLDGYNVCIFAYGQTGSGKTFT 498 (1035)
Q Consensus 473 LV~svLdG~N~~IfAYGqTGSGKTyT 498 (1035)
.+..+++|.| ++..++||||||..
T Consensus 30 ai~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 30 AIEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHHhcCCc--EEEECCCCchHHHH
Confidence 3445678887 46667999999975
No 302
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=25.36 E-value=47 Score=38.18 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=33.5
Q ss_pred eEEeeccCCCCCceEecCCCC-------------CCccchhhHHHHHHHHHHhhhccCCCeEE
Q 001666 484 CIFAYGQTGSGKTFTMTGPKE-------------LTEESLGVNYRALNDLFLISNQRRDTIHY 533 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~G~~~-------------~~~~~~GIipRal~dLF~~~~~~~~~~~~ 533 (1035)
-|+-||..|+|||..--.-.+ .-....|=-|+.+++||.........+.|
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvF 283 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 283 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEE
Confidence 478899999999864322111 01233466689999999998877665443
No 303
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=25.31 E-value=30 Score=33.79 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceEe
Q 001666 485 IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM 499 (1035)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998643
No 304
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=25.30 E-value=24 Score=36.25 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
+|+-.|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999876
No 305
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=25.11 E-value=52 Score=42.94 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=23.7
Q ss_pred hHhHHHhhHHHHHHHhcCcc------eeEEeeccCCCCCceEe
Q 001666 463 QAEVFSDTRSLIRSVLDGYN------VCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 463 QeeVf~~v~pLV~svLdG~N------~~IfAYGqTGSGKTyTM 499 (1035)
|++.-+.+...|..+..|.+ ++++-+|+||+|||++.
T Consensus 571 Q~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 571 QDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 44444444444444444443 46888999999999875
No 306
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=25.11 E-value=50 Score=41.30 Aligned_cols=47 Identities=21% Similarity=0.473 Sum_probs=25.9
Q ss_pred eEEE-eceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCc
Q 001666 449 KSFS-FNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKT 496 (1035)
Q Consensus 449 k~F~-FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKT 496 (1035)
+.|. |+.+|+.+..-+.|.+-+...+.. +......++-.|++|+|||
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~g-l~~~~~IL~LvGPpG~GKS 117 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQG-LEEKKQILYLLGPVGGGKS 117 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHHh-cCCCCceEEEecCCCCCch
Confidence 3444 556666433333333222222222 2445567888999999999
No 307
>PRK10867 signal recognition particle protein; Provisional
Probab=25.10 E-value=60 Score=39.17 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=16.4
Q ss_pred ceeEEeeccCCCCCceEecC
Q 001666 482 NVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~G 501 (1035)
-.+|+..|.+|||||+|...
T Consensus 100 p~vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred CEEEEEECCCCCcHHHHHHH
Confidence 45788889999999998743
No 308
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=24.97 E-value=30 Score=34.21 Aligned_cols=16 Identities=38% Similarity=0.411 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998653
No 309
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=24.84 E-value=57 Score=39.37 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=20.9
Q ss_pred hHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 470 TRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 470 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
+..++.-+=.++|.++ .|++|+||||.-.+
T Consensus 199 L~rl~~fve~~~Nli~--lGp~GTGKThla~~ 228 (449)
T TIGR02688 199 LARLLPLVEPNYNLIE--LGPKGTGKSYIYNN 228 (449)
T ss_pred HHhhHHHHhcCCcEEE--ECCCCCCHHHHHHH
Confidence 3334444447777765 69999999988765
No 310
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=24.60 E-value=44 Score=39.94 Aligned_cols=17 Identities=47% Similarity=0.614 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceEe
Q 001666 483 VCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM 499 (1035)
..|+-+|+||+|||+..
T Consensus 109 ~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 109 SNILLIGPTGSGKTLLA 125 (412)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 56889999999999754
No 311
>CHL00176 ftsH cell division protein; Validated
Probab=24.50 E-value=48 Score=41.86 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=28.5
Q ss_pred EEEeceeeCCCCchHhHHHhhHHHHHHHhcC---------cceeEEeeccCCCCCceEec
Q 001666 450 SFSFNKVFGPNATQAEVFSDTRSLIRSVLDG---------YNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 450 ~F~FD~VF~~~atQeeVf~~v~pLV~svLdG---------~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.++||.|.+.+...+++ ..++..+-+. ...-|+-||++|+|||+...
T Consensus 179 ~~~f~dv~G~~~~k~~l----~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 179 GITFRDIAGIEEAKEEF----EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred CCCHHhccChHHHHHHH----HHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 46788887765444333 3333322211 12348899999999998763
No 312
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.34 E-value=24 Score=40.50 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.0
Q ss_pred eEEeeccCCCCCceEecC
Q 001666 484 CIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~G 501 (1035)
.|+-.|.||||||++|.-
T Consensus 145 siii~G~t~sGKTt~lna 162 (312)
T COG0630 145 SIIICGGTASGKTTLLNA 162 (312)
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 467789999999999853
No 313
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=24.20 E-value=37 Score=41.61 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=31.1
Q ss_pred eEEEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 449 KSFSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 449 k~F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..+.||.+++.+..-..+.+.++.+ ...+.-|+-+|.+||||++.-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-----A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-----AMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-----hCCCCCEEEECCCCccHHHHH
Confidence 4678999888765444444443222 235677999999999997654
No 314
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=24.18 E-value=48 Score=37.76 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=22.4
Q ss_pred chHhHHHhhHHHHHHHhcCc-ceeEEeeccCCCCCceEe
Q 001666 462 TQAEVFSDTRSLIRSVLDGY-NVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 462 tQeeVf~~v~pLV~svLdG~-N~~IfAYGqTGSGKTyTM 499 (1035)
.|+.+.+.+.. .+-.|. .-+++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l~~---~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTLKN---AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHHHH---HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 35555444433 333454 346789999999999766
No 315
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.06 E-value=42 Score=39.76 Aligned_cols=26 Identities=42% Similarity=0.473 Sum_probs=20.4
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
..|-.++.|..+...| |||||||-+.
T Consensus 90 ~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 3566788999986555 9999999765
No 316
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=24.01 E-value=62 Score=35.51 Aligned_cols=30 Identities=27% Similarity=0.207 Sum_probs=23.0
Q ss_pred hHHHHHHHhc--CcceeEEeeccCCCCCceEe
Q 001666 470 TRSLIRSVLD--GYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 470 v~pLV~svLd--G~N~~IfAYGqTGSGKTyTM 499 (1035)
+..+++.+.+ .....|.-||..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 66778899999999999654
No 317
>PRK08233 hypothetical protein; Provisional
Probab=23.93 E-value=32 Score=35.06 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=12.5
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999765
No 318
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.92 E-value=4.2e+02 Score=29.46 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhh
Q 001666 366 MEDLDTLGNQLHG 378 (1035)
Q Consensus 366 ~~~~~~l~~~~~~ 378 (1035)
.++++.|+..+++
T Consensus 59 ~~DIn~lE~iIkq 71 (230)
T PF10146_consen 59 NQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445544443
No 319
>CHL00181 cbbX CbbX; Provisional
Probab=23.79 E-value=31 Score=39.04 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.2
Q ss_pred EEeeccCCCCCceEec
Q 001666 485 IFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~ 500 (1035)
|+-||++|+|||+...
T Consensus 62 ill~G~pGtGKT~lAr 77 (287)
T CHL00181 62 MSFTGSPGTGKTTVAL 77 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5669999999998753
No 320
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=23.73 E-value=26 Score=44.87 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=15.3
Q ss_pred ceeEEeeccCCCCCceEec
Q 001666 482 NVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM~ 500 (1035)
|.-++..|.||||||++|-
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 3346778999999999984
No 321
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=23.52 E-value=57 Score=34.89 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=21.6
Q ss_pred HHHHHHhcCc---ceeEEeeccCCCCCceEec
Q 001666 472 SLIRSVLDGY---NVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 472 pLV~svLdG~---N~~IfAYGqTGSGKTyTM~ 500 (1035)
+-++.++.|- ...+.-||.+|||||....
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4467777543 4577899999999987654
No 322
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.49 E-value=36 Score=41.71 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=25.5
Q ss_pred EeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 452 SFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 452 ~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
+||.|. .|+.+...+...+.+ ......++-||+.|+|||.+.
T Consensus 12 ~~~dvv----Gq~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 12 TFDEVV----GQEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CHHHhc----ChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHH
Confidence 345554 356665554444433 112234689999999999776
No 323
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.38 E-value=4.5e+02 Score=30.37 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001666 327 KTRLLKQQMLIELQQRDIVELKQTLHTAKAGMQF 360 (1035)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~ 360 (1035)
+..+..++..++..+.++.+|+.++...+..++.
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 324
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.26 E-value=29 Score=41.34 Aligned_cols=18 Identities=50% Similarity=0.554 Sum_probs=15.5
Q ss_pred eEEeeccCCCCCceEecC
Q 001666 484 CIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~G 501 (1035)
.|+-.|++|+|||+|+..
T Consensus 208 ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVK 225 (407)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567889999999999864
No 325
>PRK06217 hypothetical protein; Validated
Probab=23.20 E-value=33 Score=35.69 Aligned_cols=14 Identities=43% Similarity=0.563 Sum_probs=12.0
Q ss_pred EEeeccCCCCCceE
Q 001666 485 IFAYGQTGSGKTFT 498 (1035)
Q Consensus 485 IfAYGqTGSGKTyT 498 (1035)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 77889999999854
No 326
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.18 E-value=3.8e+02 Score=31.54 Aligned_cols=56 Identities=25% Similarity=0.238 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001666 333 QQMLIELQQRDIVELKQTLHTAKAGMQFLQVKYMEDLDTLGNQLHGLAHAASSYQKVLEE 392 (1035)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~e 392 (1035)
-++.++.++.+..+||+.-++++.+.++| .++.+.|+.+++.|....+-+.+..+|
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL----~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKL----VAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34556677777777777666666555554 456667777777777777777766665
No 327
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=23.16 E-value=51 Score=35.02 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=20.3
Q ss_pred HHHHHhc-Ccc--eeEEeeccCCCCCceEec
Q 001666 473 LIRSVLD-GYN--VCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 473 LV~svLd-G~N--~~IfAYGqTGSGKTyTM~ 500 (1035)
-++.++. |.. ..+..+|.+|||||....
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 4667775 443 457899999999997653
No 328
>PHA02624 large T antigen; Provisional
Probab=22.85 E-value=59 Score=40.86 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=23.0
Q ss_pred HHHHHHHhcCcce--eEEeeccCCCCCceEec
Q 001666 471 RSLIRSVLDGYNV--CIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 471 ~pLV~svLdG~N~--~IfAYGqTGSGKTyTM~ 500 (1035)
..+++.++.|..- ||+-||+.|||||+-..
T Consensus 418 ~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~ 449 (647)
T PHA02624 418 YDILKLIVENVPKRRYWLFKGPVNSGKTTLAA 449 (647)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHH
Confidence 4456667777655 99999999999987553
No 329
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.82 E-value=29 Score=41.59 Aligned_cols=18 Identities=39% Similarity=0.351 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCCceEec
Q 001666 483 VCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~ 500 (1035)
..|...|+||+|||+|+.
T Consensus 192 ~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTA 209 (420)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 357788999999999984
No 330
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=22.80 E-value=57 Score=40.97 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=24.5
Q ss_pred CCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 458 GPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 458 ~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.+...|..+..++ +...-.....-++..|+||||||...
T Consensus 235 ~lt~~Q~~ai~~I---~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 235 KLTRAQKRVVKEI---LQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCHHHHHHHHHH---HHHhccCCCccEEEECCCCCcHHHHH
Confidence 4555676666553 22222333345788999999999865
No 331
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=22.62 E-value=38 Score=34.64 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.7
Q ss_pred EEeeccCCCCCceEe
Q 001666 485 IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM 499 (1035)
++-+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999998754
No 332
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.50 E-value=32 Score=30.41 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=13.1
Q ss_pred EEeeccCCCCCceEecC
Q 001666 485 IFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~G 501 (1035)
++.+|..|+|||.+...
T Consensus 2 ~~~~g~~G~Gktt~~~~ 18 (99)
T cd01983 2 IVVTGKGGVGKTTLAAN 18 (99)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56678889999987653
No 333
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=22.49 E-value=61 Score=33.80 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=15.5
Q ss_pred cCcceeEEeeccCCCCCce
Q 001666 479 DGYNVCIFAYGQTGSGKTF 497 (1035)
Q Consensus 479 dG~N~~IfAYGqTGSGKTy 497 (1035)
..++..|+-+|.+||||+.
T Consensus 19 a~~~~pVlI~GE~GtGK~~ 37 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKEL 37 (168)
T ss_dssp TTSTS-EEEECSTTSSHHH
T ss_pred hCCCCCEEEEcCCCCcHHH
Confidence 4777999999999999963
No 334
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.33 E-value=9e+02 Score=26.68 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001666 330 LLKQQMLIELQQRDIVELKQTLHTAKAGMQ 359 (1035)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~ 359 (1035)
+...+..++..+..+.+++..++..+..+.
T Consensus 79 i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 79 IERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555544444333
No 335
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=22.26 E-value=29 Score=36.49 Aligned_cols=15 Identities=47% Similarity=0.459 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceEe
Q 001666 485 IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM 499 (1035)
|.-.|++|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999764
No 336
>PRK14531 adenylate kinase; Provisional
Probab=22.19 E-value=37 Score=35.38 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=12.8
Q ss_pred eEEeeccCCCCCceE
Q 001666 484 CIFAYGQTGSGKTFT 498 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyT 498 (1035)
-|+.+|..|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999865
No 337
>PRK06851 hypothetical protein; Provisional
Probab=22.11 E-value=2.9e+02 Score=32.77 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=23.9
Q ss_pred HHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 473 LIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 473 LV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.+++++++.+-.++--|.+|+|||..|.
T Consensus 205 ~~~~l~~~~~~~~~i~G~pG~GKstl~~ 232 (367)
T PRK06851 205 FVPSLTEGVKNRYFLKGRPGTGKSTMLK 232 (367)
T ss_pred hHHhHhcccceEEEEeCCCCCcHHHHHH
Confidence 5667778999999999999999997763
No 338
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=21.91 E-value=29 Score=36.37 Aligned_cols=15 Identities=47% Similarity=0.470 Sum_probs=12.6
Q ss_pred EEeeccCCCCCceEe
Q 001666 485 IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM 499 (1035)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 339
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=21.90 E-value=3.7e+02 Score=33.55 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 001666 744 SDVKELKEQIVSLKAALARKDG 765 (1035)
Q Consensus 744 ~~i~eLk~eI~~Lk~~L~~~~~ 765 (1035)
.+-++|++.|..|+..|.....
T Consensus 438 ~EkQeL~~yi~~Le~r~~~~~~ 459 (546)
T PF07888_consen 438 EEKQELLEYIERLEQRLDKVAD 459 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777888888877755433
No 340
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.87 E-value=54 Score=38.25 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.1
Q ss_pred ceeEEeeccCCCCCceEe
Q 001666 482 NVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 482 N~~IfAYGqTGSGKTyTM 499 (1035)
.-.++-||+.|+|||++.
T Consensus 38 ~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred CeEEEEecCCCCCHHHHH
Confidence 346789999999999866
No 341
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=21.70 E-value=33 Score=33.53 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4567899999999876
No 342
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.61 E-value=4.9e+02 Score=33.98 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHhhhhhh
Q 001666 149 MARIVNCVLALKSYSEWK 166 (1035)
Q Consensus 149 ~~kVv~cL~aL~~~~~~k 166 (1035)
.-.-++|++++++++.+.
T Consensus 271 ~l~~lD~l~a~a~~a~~~ 288 (782)
T PRK00409 271 IFDELDFIFARARYAKAL 288 (782)
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 456679999999987543
No 343
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=21.57 E-value=42 Score=38.48 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=12.5
Q ss_pred eEEeeccCCCCCce
Q 001666 484 CIFAYGQTGSGKTF 497 (1035)
Q Consensus 484 ~IfAYGqTGSGKTy 497 (1035)
.|+-.|+||||||-
T Consensus 6 ii~I~GpTasGKS~ 19 (300)
T PRK14729 6 IVFIFGPTAVGKSN 19 (300)
T ss_pred EEEEECCCccCHHH
Confidence 68889999999985
No 344
>PRK09039 hypothetical protein; Validated
Probab=21.56 E-value=7.4e+02 Score=29.05 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=7.9
Q ss_pred cHHHHHHHHhcc
Q 001666 239 NINVLVRAALSD 250 (1035)
Q Consensus 239 ~l~~~~~~~~~~ 250 (1035)
+++++++-+|++
T Consensus 35 ~~f~~~q~fLs~ 46 (343)
T PRK09039 35 TVFVVAQFFLSR 46 (343)
T ss_pred HHHHHHHHHHHH
Confidence 345777777764
No 345
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=21.53 E-value=59 Score=38.91 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCCceEec
Q 001666 483 VCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 483 ~~IfAYGqTGSGKTyTM~ 500 (1035)
.-++.+|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 457899999999999874
No 346
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.53 E-value=2.9e+02 Score=33.79 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001666 327 KTRLLKQQMLIELQQRDIVELKQTLHTAKAGMQFLQ 362 (1035)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~ 362 (1035)
+..+..++...++++++++.|+.+++.+.+..+.++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle 103 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQ 103 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 555777888889999999999988886665555543
No 347
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=21.43 E-value=37 Score=38.32 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=13.1
Q ss_pred EEeeccCCCCCceEe
Q 001666 485 IFAYGQTGSGKTFTM 499 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM 499 (1035)
|+-+|++|+|||+.-
T Consensus 61 vll~G~pGTGKT~lA 75 (284)
T TIGR02880 61 MSFTGNPGTGKTTVA 75 (284)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677999999999765
No 348
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.37 E-value=7.7e+02 Score=28.15 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-Hhhh
Q 001666 325 ESKTRLLKQQMLIELQQRDIVELKQTLHTAKAGMQFLQVKYMEDLDTLGNQLHGLAHAASSYQKVLEEN-RKLY 397 (1035)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~e~-r~L~ 397 (1035)
++......-+..++.+..++.++...+..++.++.+++. ++..|...+..+..-....+..+.+| |.+|
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~----eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKA----EIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 349
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=21.37 E-value=31 Score=45.20 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=16.7
Q ss_pred cceeEEeeccCCCCCceEec
Q 001666 481 YNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~ 500 (1035)
.|.-.+..|+||||||++|-
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 36667888999999999984
No 350
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=21.33 E-value=42 Score=34.35 Aligned_cols=16 Identities=44% Similarity=0.586 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999865
No 351
>PRK14532 adenylate kinase; Provisional
Probab=21.22 E-value=42 Score=34.79 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=12.8
Q ss_pred eEEeeccCCCCCceE
Q 001666 484 CIFAYGQTGSGKTFT 498 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyT 498 (1035)
.|+..|..|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999864
No 352
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.21 E-value=47 Score=37.67 Aligned_cols=45 Identities=22% Similarity=0.491 Sum_probs=29.4
Q ss_pred eEEeeccCCCCCceEecCCCCC-------------CccchhhHHHHHHHHHHhhhccC
Q 001666 484 CIFAYGQTGSGKTFTMTGPKEL-------------TEESLGVNYRALNDLFLISNQRR 528 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~G~~~~-------------~~~~~GIipRal~dLF~~~~~~~ 528 (1035)
-|+.||+.|+|||..--.-.+. ...-.|--.|.+++||......+
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkk 270 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK 270 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccc
Confidence 4899999999999754321110 11223555788999998875443
No 353
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=21.18 E-value=41 Score=33.87 Aligned_cols=16 Identities=44% Similarity=0.474 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998654
No 354
>PHA01747 putative ATP-dependent protease
Probab=21.12 E-value=51 Score=39.09 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=26.9
Q ss_pred hHHHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 470 TRSLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 470 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
+-|+|++-..+.|.-++=.|+.|+||||+..
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f~ 208 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTFV 208 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHHH
Confidence 4688887778899999999999999999864
No 355
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.08 E-value=3.9e+02 Score=32.07 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHcCCC-CcccchhhccccchhHHHHHHHHHH
Q 001666 119 ENVRNFLVAAEELGLP-TFEASDLEQGGKSAMARIVNCVLAL 159 (1035)
Q Consensus 119 ENI~~FL~ac~~lGlp-~Fet~DL~egkn~~~~kVv~cL~aL 159 (1035)
+||..||+-+..--=+ ..-.--.||.+| .+-..+|-.|
T Consensus 29 ~nv~eyLkl~~~aDk~Q~~rIkq~FekkN---qksa~~i~~l 67 (395)
T PF10267_consen 29 ENVAEYLKLASNADKQQAARIKQVFEKKN---QKSAQTIAQL 67 (395)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHh---HHHHHHHHHH
Confidence 6666666655431111 122223455555 4444444444
No 356
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=21.08 E-value=46 Score=44.07 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=22.6
Q ss_pred HHHHHHhcCcceeEEeeccCCCCCceEec
Q 001666 472 SLIRSVLDGYNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 472 pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 500 (1035)
..|..++.+.+.+| ..|..|+||||+|-
T Consensus 353 ~Av~~il~s~~v~v-v~G~AGTGKTT~l~ 380 (988)
T PRK13889 353 DALAHVTDGRDLGV-VVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHHhcCCCeEE-EEeCCCCCHHHHHH
Confidence 46778888877654 88999999999873
No 357
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=21.01 E-value=52 Score=36.95 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=17.7
Q ss_pred CcceeEEeeccCCCCCceEe
Q 001666 480 GYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 480 G~N~~IfAYGqTGSGKTyTM 499 (1035)
.-+.+|.-||+=|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56788999999999999876
No 358
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=20.98 E-value=53 Score=41.63 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=27.4
Q ss_pred EEeceeeCCCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 451 FSFNKVFGPNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 451 F~FD~VF~~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
+.|+.+++.+..-..+.+.+ .. +...+.-|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~~----~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV----EM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHHH----HH-HhCCCCCEEEECCCCcCHHHHH
Confidence 34566666554444444443 22 2355678899999999998643
No 359
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.90 E-value=8.6e+02 Score=24.44 Aligned_cols=10 Identities=60% Similarity=0.733 Sum_probs=4.7
Q ss_pred hhhhhhhcCC
Q 001666 395 KLYNQVQDLK 404 (1035)
Q Consensus 395 ~L~n~~qdlk 404 (1035)
.|.+.|+|+|
T Consensus 100 EL~~Dv~DlK 109 (120)
T PF12325_consen 100 ELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHH
Confidence 4444455544
No 360
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=20.82 E-value=70 Score=38.42 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=27.5
Q ss_pred HHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 466 VFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 466 Vf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
.-+.+..-++.+-+|..+.-|..|.-||||||.+
T Consensus 33 e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 33 EIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 3344444467788999999999999999999987
No 361
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=20.74 E-value=29 Score=40.92 Aligned_cols=17 Identities=47% Similarity=0.657 Sum_probs=12.5
Q ss_pred eEEeeccCCCCCceEec
Q 001666 484 CIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM~ 500 (1035)
-++..|.||||||.+|.
T Consensus 17 ~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 17 HILIIGATGSGKTQAIR 33 (386)
T ss_dssp -EEEEE-TTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 46788999999997663
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=20.70 E-value=82 Score=38.00 Aligned_cols=20 Identities=45% Similarity=0.444 Sum_probs=17.0
Q ss_pred cceeEEeeccCCCCCceEec
Q 001666 481 YNVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 481 ~N~~IfAYGqTGSGKTyTM~ 500 (1035)
....|+-.|.+|+|||+|..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34678899999999999874
No 363
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=20.68 E-value=32 Score=32.72 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.3
Q ss_pred EEeeccCCCCCceEec
Q 001666 485 IFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 485 IfAYGqTGSGKTyTM~ 500 (1035)
|..+|.+|||||..|.
T Consensus 4 i~~~G~~~~GKstl~~ 19 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLN 19 (161)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6678999999998663
No 364
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=20.66 E-value=35 Score=41.89 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceEe
Q 001666 484 CIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 484 ~IfAYGqTGSGKTyTM 499 (1035)
-|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4788999999999764
No 365
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=20.56 E-value=54 Score=38.60 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=18.4
Q ss_pred cCcceeEEeeccCCCCCceE
Q 001666 479 DGYNVCIFAYGQTGSGKTFT 498 (1035)
Q Consensus 479 dG~N~~IfAYGqTGSGKTyT 498 (1035)
.|+.-+|++.|+.|+|||.-
T Consensus 20 ~Gi~f~im~~G~sG~GKttf 39 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTF 39 (373)
T ss_pred cCCceEEEEecCCCCchhHH
Confidence 69999999999999999963
No 366
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=20.56 E-value=64 Score=41.95 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=18.7
Q ss_pred hHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 470 TRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 470 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
...+++.+-. |-.++..|+||||||..+
T Consensus 7 ~~~i~~~l~~--~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 7 LPALRDALAA--HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred HHHHHHHHHc--CCcEEEECCCCCCHHHHH
Confidence 3445555433 345678899999999765
No 367
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=20.44 E-value=69 Score=43.54 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=19.6
Q ss_pred HHHhhHHHHHHHhcCcceeEEeeccCCCCCceEe
Q 001666 466 VFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 466 Vf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 499 (1035)
||..-..++.. +.+.. .++..|+||||||..+
T Consensus 75 i~~~r~~Il~a-i~~~~-VviI~GeTGSGKTTql 106 (1294)
T PRK11131 75 VSQKKQDILEA-IRDHQ-VVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHHHHHHHHH-HHhCC-eEEEECCCCCCHHHHH
Confidence 44433334443 34434 5667899999999854
No 368
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.41 E-value=8.9e+02 Score=28.19 Aligned_cols=35 Identities=29% Similarity=0.194 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001666 332 KQQMLIELQQRDIVELKQTLHTAKAGMQFLQVKYM 366 (1035)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~ 366 (1035)
.|++.|.++..+|.+|...+...-.+.+.++..+.
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444445555555555444444444444433
No 369
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.36 E-value=6.9e+02 Score=28.49 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Q 001666 347 LKQTLHTAKAGMQFLQV---KYMEDLDTLGNQLHG 378 (1035)
Q Consensus 347 l~~~l~~~k~~~~~~~~---~~~~~~~~l~~~~~~ 378 (1035)
-+.+|+...+.++.||. -|+++++.|+..++.
T Consensus 202 kk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 202 KKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 33334444444444443 356666666555443
No 370
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.35 E-value=5.6e+02 Score=32.05 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=8.9
Q ss_pred CCCEEEEEEeC--CC
Q 001666 404 KGNIRVYCRVR--PF 416 (1035)
Q Consensus 404 kGnIRV~~RVR--P~ 416 (1035)
..+.++++=++ |.
T Consensus 150 ~n~pkl~LP~sllP~ 164 (907)
T KOG2264|consen 150 TNNPKLFLPFSLLPL 164 (907)
T ss_pred hcCCceeeccccCcc
Confidence 35778887776 65
No 371
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=20.32 E-value=57 Score=32.89 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=15.7
Q ss_pred CcceeEEeeccCCCCCceEe
Q 001666 480 GYNVCIFAYGQTGSGKTFTM 499 (1035)
Q Consensus 480 G~N~~IfAYGqTGSGKTyTM 499 (1035)
+....|...|++|.||+..+
T Consensus 100 ~~~~~v~~~G~~nvGKStli 119 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSII 119 (157)
T ss_pred ccceEEEEEeCCCCChHHHH
Confidence 44567777999999998765
No 372
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=20.30 E-value=58 Score=36.87 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=24.2
Q ss_pred CCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 459 PNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 459 ~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
+-..|.++-..+ .+.+.+|.+ ++.-.+||+|||.+..-
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 445566555444 444456755 45667999999987753
No 373
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=20.30 E-value=58 Score=36.87 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=24.2
Q ss_pred CCCchHhHHHhhHHHHHHHhcCcceeEEeeccCCCCCceEecC
Q 001666 459 PNATQAEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMTG 501 (1035)
Q Consensus 459 ~~atQeeVf~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 501 (1035)
+-..|.++-..+ .+.+.+|.+ ++.-.+||+|||.+..-
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 445566555444 444456755 45667999999987753
No 374
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=20.05 E-value=77 Score=33.68 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=21.2
Q ss_pred HHHHHHhcC-c--ceeEEeeccCCCCCceEec
Q 001666 472 SLIRSVLDG-Y--NVCIFAYGQTGSGKTFTMT 500 (1035)
Q Consensus 472 pLV~svLdG-~--N~~IfAYGqTGSGKTyTM~ 500 (1035)
+-++.++.| + ...+.-+|++|+|||..+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 456777754 3 4467789999999997664
Done!