Query 001667
Match_columns 1034
No_of_seqs 238 out of 411
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1057 Arp2/3 complex-interac 100.0 2E-296 3E-301 2484.9 60.2 962 5-1034 39-1017(1018)
2 COG0189 RimK Glutathione synth 99.9 4.5E-28 9.7E-33 266.5 12.2 246 13-288 35-287 (318)
3 PF08443 RimK: RimK-like ATP-g 99.9 1.3E-26 2.9E-31 235.8 5.9 171 94-295 1-174 (190)
4 PRK10446 ribosomal protein S6 99.9 2.8E-23 6E-28 224.5 15.8 247 8-288 2-263 (300)
5 TIGR00768 rimK_fam alpha-L-glu 99.9 1.3E-21 2.9E-26 205.0 14.9 248 9-289 2-255 (277)
6 PRK05246 glutathione synthetas 99.9 9E-22 1.9E-26 215.1 9.6 197 52-288 75-284 (316)
7 PLN02941 inositol-tetrakisphos 99.8 3.1E-20 6.8E-25 205.5 19.3 266 4-307 19-321 (328)
8 TIGR02144 LysX_arch Lysine bio 99.8 8.8E-21 1.9E-25 200.8 13.8 236 22-288 11-252 (280)
9 TIGR01380 glut_syn glutathione 99.8 2.9E-21 6.4E-26 211.3 10.0 197 52-288 74-283 (312)
10 PRK12458 glutathione synthetas 99.8 2.4E-20 5.2E-25 206.7 10.4 199 52-288 75-296 (338)
11 PF00328 His_Phos_2: Histidine 99.8 1.8E-18 3.9E-23 184.4 20.6 151 676-938 197-347 (347)
12 TIGR03103 trio_acet_GNAT GNAT- 99.7 5.7E-17 1.2E-21 190.1 8.2 177 84-291 285-526 (547)
13 TIGR02291 rimK_rel_E_lig alpha 99.7 1.7E-16 3.7E-21 175.3 10.9 180 84-287 25-267 (317)
14 PRK01372 ddl D-alanine--D-alan 99.6 9.2E-15 2E-19 157.4 16.6 245 6-288 4-268 (304)
15 TIGR02068 cya_phycin_syn cyano 99.6 1.9E-15 4.1E-20 185.5 8.6 173 86-288 203-444 (864)
16 PRK14016 cyanophycin synthetas 99.6 2.5E-15 5.4E-20 181.6 8.3 176 83-288 201-445 (727)
17 PRK02471 bifunctional glutamat 99.5 6.1E-14 1.3E-18 170.0 8.9 179 83-288 475-724 (752)
18 TIGR01205 D_ala_D_alaTIGR D-al 99.4 2.4E-12 5.3E-17 139.2 14.5 212 55-293 62-289 (315)
19 PRK14571 D-alanyl-alanine synt 99.4 6.5E-12 1.4E-16 136.1 15.1 232 20-289 18-264 (299)
20 TIGR01435 glu_cys_lig_rel glut 99.3 9.8E-13 2.1E-17 158.6 5.8 175 85-287 464-709 (737)
21 PF02955 GSH-S_ATP: Prokaryoti 99.3 3.6E-12 7.7E-17 130.7 6.7 123 147-290 34-162 (173)
22 PRK14569 D-alanyl-alanine synt 99.3 7.1E-11 1.5E-15 128.7 15.0 246 6-290 3-268 (296)
23 KOG1057 Arp2/3 complex-interac 99.2 1.2E-12 2.6E-17 153.9 0.9 84 837-944 781-864 (1018)
24 PRK12767 carbamoyl phosphate s 99.2 7E-11 1.5E-15 128.3 13.2 195 56-288 69-268 (326)
25 PRK01966 ddl D-alanyl-alanine 99.2 9.2E-11 2E-15 129.8 12.7 204 56-287 81-298 (333)
26 PRK06849 hypothetical protein; 99.2 1E-10 2.2E-15 131.2 12.5 193 57-287 77-273 (389)
27 PRK14572 D-alanyl-alanine synt 99.2 1.2E-10 2.5E-15 129.8 11.1 187 72-287 105-312 (347)
28 TIGR01142 purT phosphoribosylg 99.1 2.1E-10 4.4E-15 127.6 12.4 210 57-300 63-289 (380)
29 cd07061 HP_HAP_like Histidine 99.1 3.5E-10 7.6E-15 118.6 13.3 49 495-547 28-78 (242)
30 PRK14568 vanB D-alanine--D-lac 99.1 1.4E-09 3.1E-14 120.9 16.6 198 56-287 90-307 (343)
31 PRK14570 D-alanyl-alanine synt 99.1 1.3E-09 2.7E-14 123.0 15.0 203 56-287 87-313 (364)
32 PRK13790 phosphoribosylamine-- 99.0 1.3E-09 2.9E-14 122.9 10.9 196 67-288 36-248 (379)
33 PRK09288 purT phosphoribosylgl 98.9 4.2E-09 9E-14 117.8 10.4 197 56-287 75-282 (395)
34 PF13535 ATP-grasp_4: ATP-gras 98.9 1.1E-09 2.5E-14 107.9 5.0 161 93-288 1-177 (184)
35 TIGR01161 purK phosphoribosyla 98.9 6E-09 1.3E-13 115.7 10.9 191 57-287 61-262 (352)
36 PF05770 Ins134_P3_kin: Inosit 98.9 7.8E-09 1.7E-13 114.7 11.4 257 4-300 5-299 (307)
37 PRK00885 phosphoribosylamine-- 98.9 6.7E-09 1.5E-13 118.0 9.9 207 57-288 63-286 (420)
38 PRK07206 hypothetical protein; 98.8 7.6E-08 1.6E-12 108.7 14.5 207 57-287 71-285 (416)
39 PRK05294 carB carbamoyl phosph 98.7 1.7E-08 3.8E-13 127.3 9.3 198 56-288 629-839 (1066)
40 PRK05586 biotin carboxylase; V 98.7 2.8E-08 6E-13 114.2 9.0 202 55-288 73-291 (447)
41 PRK07178 pyruvate carboxylase 98.7 4E-08 8.6E-13 114.1 9.5 203 56-288 73-290 (472)
42 PRK06019 phosphoribosylaminoim 98.7 4.2E-08 9.1E-13 110.4 9.4 195 56-288 63-265 (372)
43 PRK02186 argininosuccinate lya 98.7 6.2E-08 1.3E-12 120.3 11.6 202 51-287 65-274 (887)
44 PF02655 ATP-grasp_3: ATP-gras 98.7 4.5E-08 9.7E-13 98.3 7.2 146 95-287 2-155 (161)
45 PRK08654 pyruvate carboxylase 98.6 4E-08 8.7E-13 115.2 7.6 203 56-288 74-290 (499)
46 PRK08463 acetyl-CoA carboxylas 98.6 4.6E-08 9.9E-13 113.8 8.0 204 56-288 73-291 (478)
47 TIGR00877 purD phosphoribosyla 98.6 8.2E-08 1.8E-12 108.9 9.6 203 57-287 65-287 (423)
48 PRK08462 biotin carboxylase; V 98.6 9.6E-08 2.1E-12 109.4 10.0 197 56-287 76-292 (445)
49 TIGR01369 CPSaseII_lrg carbamo 98.6 9E-08 1.9E-12 120.9 10.5 199 56-288 629-839 (1050)
50 PRK08591 acetyl-CoA carboxylas 98.6 5.3E-08 1.1E-12 111.5 7.0 205 56-288 74-291 (451)
51 PRK06111 acetyl-CoA carboxylas 98.5 3.6E-07 7.9E-12 104.4 11.6 203 57-288 75-291 (450)
52 PRK06395 phosphoribosylamine-- 98.5 2E-07 4.3E-12 107.6 8.9 204 57-287 66-290 (435)
53 PF14397 ATPgrasp_ST: Sugar-tr 98.5 1.6E-07 3.5E-12 103.0 7.8 186 86-289 16-257 (285)
54 TIGR00514 accC acetyl-CoA carb 98.5 2.6E-07 5.5E-12 106.3 9.4 198 56-287 74-290 (449)
55 PLN02257 phosphoribosylamine-- 98.5 6.5E-07 1.4E-11 103.5 11.3 194 67-287 71-287 (434)
56 PRK14573 bifunctional D-alanyl 98.5 3.3E-06 7.2E-11 104.2 17.9 207 56-287 526-753 (809)
57 TIGR01235 pyruv_carbox pyruvat 98.4 2.5E-07 5.3E-12 117.5 7.3 199 56-287 74-290 (1143)
58 PF15632 ATPgrasp_Ter: ATP-gra 98.4 1.5E-06 3.3E-11 97.5 11.8 197 56-287 66-278 (329)
59 PRK12833 acetyl-CoA carboxylas 98.4 5.2E-07 1.1E-11 104.8 8.1 202 56-288 77-294 (467)
60 PLN02948 phosphoribosylaminoim 98.4 1E-06 2.2E-11 105.3 10.7 193 57-287 84-287 (577)
61 PRK12815 carB carbamoyl phosph 98.4 8.4E-07 1.8E-11 112.5 10.3 195 56-287 630-836 (1068)
62 PRK05294 carB carbamoyl phosph 98.3 1.7E-06 3.7E-11 109.7 10.0 195 56-287 82-301 (1066)
63 PRK12999 pyruvate carboxylase; 98.3 1.3E-06 2.7E-11 111.4 8.7 198 56-287 78-294 (1146)
64 PRK06524 biotin carboxylase-li 98.3 2.4E-06 5.2E-11 100.2 9.8 185 72-287 117-320 (493)
65 PF07478 Dala_Dala_lig_C: D-al 98.2 1.4E-06 3E-11 91.3 5.7 159 103-290 1-178 (203)
66 PLN02735 carbamoyl-phosphate s 98.2 4.5E-06 9.7E-11 106.3 11.0 201 55-290 97-322 (1102)
67 COG1181 DdlA D-alanine-D-alani 98.2 8.6E-06 1.9E-10 91.1 10.7 189 71-287 77-283 (317)
68 PLN02735 carbamoyl-phosphate s 98.2 3.5E-06 7.7E-11 107.2 8.3 197 56-287 649-873 (1102)
69 COG1821 Predicted ATP-utilizin 98.1 1.2E-05 2.6E-10 87.2 10.4 166 56-287 73-253 (307)
70 PRK13789 phosphoribosylamine-- 98.1 9.4E-06 2E-10 93.8 10.3 202 57-288 69-293 (426)
71 TIGR01369 CPSaseII_lrg carbamo 98.1 7.8E-06 1.7E-10 103.7 10.2 196 56-287 81-299 (1050)
72 TIGR02712 urea_carbox urea car 97.9 2.4E-05 5.2E-10 100.5 9.6 202 56-288 73-290 (1201)
73 PRK12815 carB carbamoyl phosph 97.9 3.1E-05 6.6E-10 98.7 10.5 197 56-287 82-300 (1068)
74 PRK05784 phosphoribosylamine-- 97.9 5.5E-05 1.2E-09 89.1 10.2 202 57-287 70-307 (486)
75 PF02750 Synapsin_C: Synapsin, 97.7 7.1E-05 1.5E-09 78.8 6.8 168 86-291 1-179 (203)
76 PF14398 ATPgrasp_YheCD: YheC/ 97.6 0.00011 2.5E-09 79.9 7.8 188 80-289 7-232 (262)
77 PRK13278 purP 5-formaminoimida 97.2 0.0093 2E-07 68.3 16.6 178 79-289 107-311 (358)
78 COG2232 Predicted ATP-dependen 96.9 0.0029 6.3E-08 71.4 8.8 154 83-287 107-271 (389)
79 COG0439 AccC Biotin carboxylas 96.8 0.0023 5E-08 75.1 7.4 200 56-287 74-290 (449)
80 PF02786 CPSase_L_D2: Carbamoy 96.7 0.00022 4.9E-09 75.6 -1.6 161 96-288 1-178 (211)
81 PRK13277 5-formaminoimidazole- 96.5 0.028 6.1E-07 64.7 13.0 163 95-297 125-325 (366)
82 COG0458 CarB Carbamoylphosphat 96.0 0.03 6.4E-07 65.0 10.0 198 56-290 70-291 (400)
83 PF01071 GARS_A: Phosphoribosy 95.0 0.011 2.4E-07 62.7 1.8 164 96-287 2-186 (194)
84 PF14305 ATPgrasp_TupA: TupA-l 92.7 2.4 5.2E-05 46.3 14.1 175 89-286 13-214 (239)
85 COG0027 PurT Formate-dependent 91.3 0.8 1.7E-05 52.3 8.7 220 11-286 38-281 (394)
86 PF02222 ATP-grasp: ATP-grasp 91.2 0.61 1.3E-05 48.7 7.2 148 104-286 1-157 (172)
87 KOG3672 Histidine acid phospha 91.1 0.14 3.1E-06 59.1 2.8 62 495-563 178-243 (487)
88 KOG3895 Synaptic vesicle prote 90.1 0.38 8.3E-06 55.2 4.9 203 74-318 178-394 (488)
89 COG0026 PurK Phosphoribosylami 89.2 1.7 3.6E-05 50.6 9.2 168 72-281 76-257 (375)
90 PF14243 DUF4343: Domain of un 82.4 9.6 0.00021 38.2 9.6 80 194-290 34-117 (130)
91 PRK10172 phosphoanhydride phos 74.1 2.4 5.1E-05 50.4 3.0 54 492-547 77-135 (436)
92 COG0151 PurD Phosphoribosylami 72.5 9.4 0.0002 45.4 7.2 213 27-287 55-286 (428)
93 PF03133 TTL: Tubulin-tyrosine 72.2 1.3 2.8E-05 48.7 0.2 54 146-217 67-126 (292)
94 KOG3720 Lysosomal & prostatic 68.7 5.2 0.00011 47.1 4.2 52 495-548 80-133 (411)
95 cd07040 HP Histidine phosphata 68.6 4.5 9.8E-05 38.9 3.1 25 519-543 47-71 (153)
96 PHA02117 glutathionylspermidin 65.4 12 0.00027 44.1 6.3 65 146-228 309-379 (397)
97 KOG3720 Lysosomal & prostatic 65.2 4.2 9E-05 47.9 2.4 33 908-946 317-349 (411)
98 PRK10172 phosphoanhydride phos 64.3 4.9 0.00011 47.9 2.8 56 859-936 322-379 (436)
99 COG3919 Predicted ATP-grasp en 54.8 9.5 0.00021 43.7 2.8 152 98-287 116-285 (415)
100 cd02639 R3H_RRM R3H domain of 52.9 15 0.00033 32.6 3.3 34 235-268 11-44 (60)
101 PRK10507 bifunctional glutathi 50.8 31 0.00066 43.1 6.5 66 146-228 529-600 (619)
102 PF00300 His_Phos_1: Histidine 46.6 16 0.00034 35.3 2.7 21 522-542 50-70 (158)
103 PRK10173 glucose-1-phosphatase 46.2 15 0.00032 43.5 2.8 55 492-547 75-133 (413)
104 TIGR03162 ribazole_cobC alpha- 40.0 20 0.00044 36.1 2.3 21 522-542 46-66 (177)
105 cd07067 HP_PGM_like Histidine 39.2 22 0.00047 34.8 2.4 21 522-542 50-70 (153)
106 TIGR01016 sucCoAbeta succinyl- 37.9 13 0.00029 42.9 0.8 42 98-152 6-48 (386)
107 PF08442 ATP-grasp_2: ATP-gras 36.1 11 0.00024 40.6 -0.3 42 99-153 6-48 (202)
108 PRK03482 phosphoglycerate muta 32.6 33 0.00071 36.2 2.6 20 522-541 50-69 (215)
109 PRK13463 phosphatase PhoE; Pro 31.8 33 0.00072 36.1 2.4 20 522-541 51-70 (203)
110 PRK10173 glucose-1-phosphatase 31.8 37 0.0008 40.3 3.1 46 859-921 304-350 (413)
111 TIGR00640 acid_CoA_mut_C methy 30.0 31 0.00067 34.7 1.8 72 6-79 54-125 (132)
112 COG0406 phoE Broad specificity 29.8 37 0.0008 35.3 2.4 23 521-543 52-74 (208)
113 smart00855 PGAM Phosphoglycera 28.9 42 0.0009 33.2 2.5 21 522-542 51-71 (155)
114 PTZ00123 phosphoglycerate muta 27.3 44 0.00096 36.3 2.5 21 522-542 39-59 (236)
115 PRK00696 sucC succinyl-CoA syn 27.2 22 0.00047 41.3 0.1 42 98-152 6-48 (388)
116 COG1038 PycA Pyruvate carboxyl 27.1 1.3E+02 0.0028 39.1 6.5 181 82-293 107-302 (1149)
117 PRK15004 alpha-ribazole phosph 27.0 42 0.00092 35.0 2.2 20 522-541 49-68 (199)
118 TIGR03848 MSMEG_4193 probable 26.3 46 0.00099 34.8 2.3 21 522-542 49-69 (204)
119 TIGR00249 sixA phosphohistidin 25.7 52 0.0011 33.4 2.6 21 522-542 47-67 (152)
120 COG1181 DdlA D-alanine-D-alani 24.1 25 0.00054 40.3 -0.1 72 144-228 87-160 (317)
121 PF13549 ATP-grasp_5: ATP-gras 23.9 21 0.00046 38.9 -0.7 94 97-213 12-115 (222)
122 PRK14046 malate--CoA ligase su 23.4 38 0.00082 39.8 1.2 42 99-153 7-49 (392)
123 cd02071 MM_CoA_mut_B12_BD meth 23.0 44 0.00096 32.6 1.4 70 6-78 51-121 (122)
124 PLN00124 succinyl-CoA ligase [ 22.7 28 0.0006 41.6 -0.1 22 98-119 33-54 (422)
125 PRK01295 phosphoglyceromutase; 21.3 70 0.0015 34.0 2.6 21 522-542 53-73 (206)
126 PRK14115 gpmA phosphoglyceromu 21.2 70 0.0015 35.2 2.6 21 522-542 51-71 (247)
127 PTZ00122 phosphoglycerate muta 20.2 82 0.0018 35.8 2.9 22 522-543 156-177 (299)
No 1
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=100.00 E-value=1.5e-296 Score=2484.92 Aligned_cols=962 Identities=54% Similarity=0.837 Sum_probs=875.3
Q ss_pred CeeEEEEeecCcccCChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCcc
Q 001667 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFL 84 (1034)
Q Consensus 5 ~~~~iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiFgd~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~ 84 (1034)
++|+||||||++|++||||++||+||+.+++|++|||+|+|||+|||||||.|||||||||+||||+||++|++||+||+
T Consensus 39 r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnPFv 118 (1018)
T KOG1057|consen 39 RQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPFV 118 (1018)
T ss_pred cceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCCee
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEec
Q 001667 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (1034)
Q Consensus 85 iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp 164 (1034)
||||.||++|||||.||+||++.|||+|++.+++|++|+++++++++++|+|+|||++|.||||||||+|||||||||||
T Consensus 119 iNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~EDHNIYIYYP 198 (1018)
T KOG1057|consen 119 INDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNIYIYYP 198 (1018)
T ss_pred eccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCcccccEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCce
Q 001667 165 SSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244 (1034)
Q Consensus 165 ~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~ 244 (1034)
+|+|||+++|||||||+||+|+|++ .+|+.|||||||||+|+|||||||||||+|||||+|||||+||+|+||+||||+
T Consensus 199 sSaGGGsqrLFRKIgnRSS~y~P~~-~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rns~GKEv 277 (1018)
T KOG1057|consen 199 SSAGGGSQRLFRKIGNRSSEYHPDS-SVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVVDGKVERNSDGKEV 277 (1018)
T ss_pred CCCCccHHHHHHHhcccccccCCcc-ccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccccceeeecCCCcee
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeCCCeEEEeecCceecccchhhHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 001667 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAIPP 324 (1034)
Q Consensus 245 r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNGwSFVK~n~kYYDdcA~iL~~~~l~~~~~~~~~~~p~ 324 (1034)
||||.||++||+||+|||.||+|+||||||||++|+|||||||||||||||+|||||||+||++||+.+.+++..+.+|+
T Consensus 278 RYpv~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G~SYVcDVNGfSFVKns~kYYDd~AkIL~~~~~~ak~~~~~~~iP~ 357 (1018)
T KOG1057|consen 278 RYPVILNSSEKQIARKVCIAFKQTVCGFDLLRANGKSYVCDVNGFSFVKNSNKYYDDCAKILGKMNLSARALAPASQIPW 357 (1018)
T ss_pred eceeecChhhHHHHhHHHhhccccccchHHhhcCCceEEEeccceeeeecchhhhHHHHHHHhhhhhhhhccCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCCcceEEEEEEEEEcCCCCccceeeEEechHHHHHHHHhhcCCCCccceeeccH
Q 001667 325 ILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSA 404 (1034)
Q Consensus 325 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~eLr~vvaViRHgDRTPKQK~K~~~~~~~fi~L~~~~~~~~~~~e~kLk~~ 404 (1034)
++||..+++ .++.+++ ++++++|||||||||||||||||||||++|++++||+||++|+|++ ++|+|||+|
T Consensus 358 ~~p~~~~~~---~~~~v~~-----~~g~~~elrcviaViRHgDRTPKQK~K~~vt~~~f~~L~ek~~G~~-~~e~klk~~ 428 (1018)
T KOG1057|consen 358 SLPGIRNEK---VEPWVPT-----SSGGMMELRCVIAVIRHGDRTPKQKMKLSVTSPKFLGLFEKYDGYK-KEETKLKSA 428 (1018)
T ss_pred CCcccccCC---CCCceec-----CCCccceeeeeEEEEecCCCCccceeeEEeccHHHHHHHHhhCCcc-ccceeeCCH
Confidence 888877655 2344443 5679999999999999999999999999999999999999999876 789999999
Q ss_pred HhHHHHHHHHHhhcccCCCCCCCCCchhhhhhhhhhHHHHHHHhcCCCCCCcce-eeccchhhhhcccccccccCCccee
Q 001667 405 VQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFN-VQDVLLSIQCHLLLANLVSGQFIDF 483 (1034)
Q Consensus 405 ~qLq~vld~~r~~l~~~~~g~~~~~~~e~~e~~~Kl~ql~~vLe~~~~fsGinr-vQlKp~~~~~~~~~~~~~~~~~~~l 483 (1034)
+|||+|||++|.++++.+ ++++++.|...||+||++||||||||||||| |||||+.|. ..++++++.++..++
T Consensus 429 ~QLq~vLd~ar~ll~e~~-----~~~~~die~~~KleQlk~vLE~~ghFsGinrKVQlk~l~~~-~~k~se~e~~r~~~l 502 (1018)
T KOG1057|consen 429 NQLQEVLDAARLLLEEKE-----DKDAEDIEEAKKLEQLKNVLEMYGHFSGINRKVQLKPLKWV-YVKKSEGELEREPQL 502 (1018)
T ss_pred HHHHHHHHHHHhhhcccc-----cCcccchhhHHHHHHHHHHHHhhCCCCCccceeeeeecccc-CCCCCccccccCcce
Confidence 999999999999998754 2234445667899999999999999999999 999999997 445555566666789
Q ss_pred EEEEeccCcch---------HHHHHHhc--c-CCCCcchhhhhhcccccceEeecCCchHHHHHHHHHhhhcccCCCCCc
Q 001667 484 LIEQFYQDNGV---------NEIAYWWG--S-HSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 551 (1034)
Q Consensus 484 lLIlKW~~GGE---------e~LG~~fR--Y-p~~~~GLLrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~legeLtP 551 (1034)
+||+|| ||| |+|||+|| | +|+|+|||||||||||||||||||||||||||||||||||+|||+|||
T Consensus 503 lliLKw--GGelT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~lEgelTp 580 (1018)
T KOG1057|consen 503 LLILKW--GGELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTP 580 (1018)
T ss_pred eEEeee--CCEecchhHhhHHHHHHHHHhcCCCCCCcceeeehhhhhccceeEecCcchHHHHHHHHHHHHHhhccCCcH
Confidence 999999 999 99999999 5 578999999999999999999999999999999999999999999999
Q ss_pred ceeeeEecCCCCcCCCccchHHHHHHHHHHHHHHhcCCCccCCCCCCCCcCcccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 001667 552 ILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQV 631 (1034)
Q Consensus 552 ilv~~V~Kd~~lLD~s~~a~~~md~vK~kL~~lL~~~~~~~~~~~~~~~~w~~~~~~~~~~P~~~~~~~~~l~~~~~~~l 631 (1034)
||||||+||+.|||++++|+++|++||++||+||+.|.++ .++|+||.. + |+|++++.+++++|+.++..+
T Consensus 581 iLvqmVkkdn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~-----~~e~~~~~~---~-P~~~~~l~~~ve~vk~~~k~~ 651 (1018)
T KOG1057|consen 581 ILVQMVKKDNTLLDDDNAASSYMDKVKARLHEILQAGREF-----TPEFDWPEL---M-PNPSEVLTQVVELVKNPVKVC 651 (1018)
T ss_pred HHHHHHHhcchhhcCcchhHHHHHHHHHHHHHHHhcCCcC-----CCccchhhc---C-CcHhHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999965 567899975 3 599999999999999998888
Q ss_pred HHHhhhcchhcccCCCCCCCCChhhhhhccCCccchhhhccCCCCCCCCHHHHHHHHHHHHHHhhccccCccccCCCCcc
Q 001667 632 RQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDV 711 (1034)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~c~gE~~~L~~eRW~KL~~dF~~~k~~kfD~SKIpdi 711 (1034)
++.+.. ..++ ..|+++.+|.+|+||+|+|+||++||+|||+|||+. .++|||||||||
T Consensus 652 ~e~~~~-------------~~~~--------~~i~v~~~~~r~~~~sE~~~Lm~~RW~Kl~rdf~~k-~~r~DiSKIpdi 709 (1018)
T KOG1057|consen 652 DENFAL-------------IEPL--------DHIDVERIQPRWPCHSETPDLMRERWEKLERDFYNK-RERFDISKIPDI 709 (1018)
T ss_pred HHhhhc-------------cccc--------cceeeecccCCCCcCCCCHHHHHHHHHHHHHHHhhh-ccccCccccchH
Confidence 764421 1122 348899999999999999999999999999999975 599999999999
Q ss_pred hhccccccccccccccccHHHHHHHHHHhcceeccccccCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHhHHhhhccc
Q 001667 712 YDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQKLKIGSKIARRLLGKLLIDLRNTREEAISVAELKSS 791 (1034)
Q Consensus 712 YD~iKYD~lHN~~l~l~~l~ELY~laK~LaD~V~PqEYGI~~~EKl~IG~~i~~pLL~KI~~DL~~~~ee~~~~~~~~~~ 791 (1034)
|||||||+|||++|.++++.|||.+||.|||+|+||||||+++|||+||..+|.|||+||+.||+++++ +..++.++.
T Consensus 710 YD~~KYD~~HN~~l~~~~~~ely~~ak~lad~vip~eYgi~~~~kl~I~~~~~~~ll~Ki~~dL~~~~e--~~~~et~~~ 787 (1018)
T KOG1057|consen 710 YDTIKYDLLHNRQLLLNGFDELYKYAKLLADIVIPQEYGINPQEKLKIGQGICTPLLGKILSDLVRTLE--LESAETKNR 787 (1018)
T ss_pred HhhhhHHhhcchhhhhccccHHHHHHHhhcccccccccCCCHHHhhhhhhhhcchhhhhhhHhhhcchh--hcchhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999886 456666666
Q ss_pred ccccccccccc--ccCCCCCCccccccccccCCCCccCCCCCCCCCcccccccccCcccCCCCCCccceeeEEEeecchh
Q 001667 792 QDQVSKSTKTE--KEDKDYPPKLFIKADDTRRSSTTSDISMDQDDDDDKETQYRLDPKYANVKTPERHVRTRLYFTSESH 869 (1034)
Q Consensus 792 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~RL~p~ya~V~SP~RhvRTrlYFTsESH 869 (1034)
.+++. .++.+ ..+-...++..+......+-+. +.-...++..++.+||.+.+....++.||++||+|||+|||
T Consensus 788 ~~p~~-~sp~~~~r~~lY~~sk~~v~sl~~~ryG~----~~~~~ln~~~~t~~~L~~~~~~d~~~e~~~~~rlyFtresh 862 (1018)
T KOG1057|consen 788 LNPVY-LSPRRHVRTRLYFTSKSHVHSLLLRRYGI----SDVEKLNDGLLTSIRLYEQILNDPTSERHFHTRLYFTRESH 862 (1018)
T ss_pred cCccc-cChhHHHHHHHhhhhHhhhhhhhhhhcCC----chhhhhcccchhceeechhhccCCcccccceeEEEeccchh
Confidence 55531 11111 1111111222222222222111 11122345678999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCeeEEEEEecCCCC-CCCCCc
Q 001667 870 IHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELTFSRGAD-LSPLEK 948 (1034)
Q Consensus 870 IhSLLNvlr~g~l~~~~~~~~~~i~~~A~~~l~~i~ELdYLSqIvf~lYE~~~~~~~~~~rf~Iei~~SpG~~-~~pl~~ 948 (1034)
||||+||+++|.++.+..|.+++++++|+..++..+|||||+||||||||++..+ .++||+|||++||||+ .+|||
T Consensus 863 i~~l~nv~~~~~~dEs~~g~~~~~~~~~l~r~~~~~eld~~~~i~fel~e~t~~S--~~Kr~~~~lt~s~g~~~~~plD- 939 (1018)
T KOG1057|consen 863 IYTLMNVIRYCNLDESDRGLPMKICRNALPRLCDLKELDYLSQIVFELFENTEAS--GPKRFSIRLTSSRGCDLSCPLD- 939 (1018)
T ss_pred hhhhhhHhhhccccccccCCccccCcccCcccccchhhhhHHHHHHHHhcccccc--cCcccceEEeecCCccccCchh-
Confidence 9999999999999998889999999999999999999999999999999999775 5699999999999998 55998
Q ss_pred CCCccCCCCCCccccCC-CCccccccCCcccHHHHHHhhcccCCCCCCCCCCCCCCCcceeeccchhHHHHHhccccCCC
Q 001667 949 NDSEASSLHQEHTLPIM-GPERLQEVGSYLTLEKMEKMIRPFAMPAEDFPPPSTPAGFTGYFAKSASVLERLVNLWPFHK 1027 (1034)
Q Consensus 949 ~~~~~~~ld~~H~i~~~-pr~~L~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1034)
.+|+.+|++||+ |+++|+ .+|+|++|+++++++++|.. +|+..+|.++++++++..+++||++++||+.+
T Consensus 940 -----~~l~~~~~ip~i~P~~~l~---~~Lsl~~v~~~lr~~~~~~~-~P~~~~~~~~~s~~s~~~~~~~r~~~~~~~~~ 1010 (1018)
T KOG1057|consen 940 -----ENLDARHYIPIIGPLESLT---NHLSLEQVEKKLRDFATPVI-PPPRFTPVNFTSNSSKSAAKLERLVNLVPPLK 1010 (1018)
T ss_pred -----hhhhccCcccccCcHHHHh---hccCHHHHHHHHHhhccccc-CCcccCcccccccchhHHHHHHHHhhccCCcc
Confidence 789999999999 999999 99999999999999999988 89999999999999999999999999999999
Q ss_pred ccCcCCC
Q 001667 1028 NANSNGK 1034 (1034)
Q Consensus 1028 ~~~~~~~ 1034 (1034)
++.++|+
T Consensus 1011 ~~~~sg~ 1017 (1018)
T KOG1057|consen 1011 NPASSGK 1017 (1018)
T ss_pred CccccCC
Confidence 9878875
No 2
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.5e-28 Score=266.49 Aligned_cols=246 Identities=23% Similarity=0.279 Sum_probs=200.9
Q ss_pred ecCcccCChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCch-HHHHHHHHHcCCcccCCcchh
Q 001667 13 VMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLVNELEPQ 91 (1034)
Q Consensus 13 AMd~Ka~SkPm~~IL~RL~~~~~feviiFgd~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~iNdl~~q 91 (1034)
.++.--++-++..+..+.....-.+++-+..+.+...+...-..+|++|.+-...+.. ..+++.++.++.++||+..+.
T Consensus 35 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~viN~p~~i 114 (318)
T COG0189 35 ILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATRFLRLAERKGVPVINDPQSI 114 (318)
T ss_pred EEcccccccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHHHHHHHHHcCCeEECCHHHH
Confidence 3333344555555555544444456777888888888888888999999999999888 788889999999999999999
Q ss_pred hHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChH
Q 001667 92 HLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGM 171 (1034)
Q Consensus 92 ~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~ 171 (1034)
...+|+..++++|+++|||+|.|+++.+. . +.-..+. +.++.|+|+||++|. .|.|+
T Consensus 115 ~~~~nK~~~~~~l~~~~ipvP~T~i~~~~--~-------~~~~~~~---~~~g~pvVlKp~~Gs-----------~G~gV 171 (318)
T COG0189 115 RRCRNKLYTTQLLAKAGIPVPPTLITRDP--D-------EAAEFVA---EHLGFPVVLKPLDGS-----------GGRGV 171 (318)
T ss_pred HhhhhHHHHHHHHHhcCCCCCCEEEEcCH--H-------HHHHHHH---HhcCCCEEEeeCCCC-----------Cccce
Confidence 99999999999999999999999999883 1 1222222 222359999999998 78887
Q ss_pred HHHHhhhC-CCcccccCCccccccc--cceEEeeccCC-CCeeeEEEEECCceEE--EeeccCCCCCCeeeecCCCCcee
Q 001667 172 KELFRKVG-NRSSEFHPDVRRVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAH--AEARKSPVVDGVVMRNPDGKEVR 245 (1034)
Q Consensus 172 ~~Lfrkig-n~sS~~~p~~~~~r~~--gsyIyEEFi~~-~G~DVKvytVG~~~vh--Ae~RKSPvvDG~vrrN~hgke~r 245 (1034)
- +.+.-. +-.+..+ ..... ..+|.||||++ ++.|++|+++|+.+++ |++|.++ .|.||.|.|+|+..
T Consensus 172 ~-~v~~~d~~l~~~~e----~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~--~~~~R~N~a~Gg~~ 244 (318)
T COG0189 172 F-LVEDADPELLSLLE----TLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA--SGDFRSNLARGGRA 244 (318)
T ss_pred E-EecCCChhHHHHHH----HHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC--CCCceeeccccccc
Confidence 4 555444 3333333 33333 46999999999 7789999999999999 9999885 99999999999999
Q ss_pred eeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeCCCeEEEeecC
Q 001667 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNG 288 (1034)
Q Consensus 246 ~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNG 288 (1034)
.++.||++++++|.++|+++|+.+||+|++++++|.||||||.
T Consensus 245 e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~EVN~ 287 (318)
T COG0189 245 EPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNV 287 (318)
T ss_pred cccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEEEeC
Confidence 9999999999999999999999999999999999999999996
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.93 E-value=1.3e-26 Score=235.79 Aligned_cols=171 Identities=29% Similarity=0.431 Sum_probs=98.3
Q ss_pred HhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEEeccCCCChHH
Q 001667 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMK 172 (1034)
Q Consensus 94 l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~ 172 (1034)
+.||..++++|+++|||+|.|.+++.. + +....+. ++ .+|+|.||+.|. .|.|+.
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~--~-------~~~~~~~~~~----~~p~ViKp~~g~-----------~G~gV~ 56 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSP--E-------EAKEFIEELG----GFPVVIKPLRGS-----------SGRGVF 56 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSH--H-------HHHHHHHHH------SSEEEE-SB------------------E
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCH--H-------HHHHHHHHhc----CCCEEEeeCCCC-----------CCCEEE
Confidence 368999999999999999999999872 1 2333343 32 379999999998 677773
Q ss_pred HHHhhhCCCcccccCCcccc-ccccceEEeeccCC-CCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeC
Q 001667 173 ELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLL 250 (1034)
Q Consensus 173 ~Lfrkign~sS~~~p~~~~~-r~~gsyIyEEFi~~-~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~L 250 (1034)
+++......+.++ .+ ..+..+++|+||+. +|.|+||||||+++++|+.|.++ +|+||+|.+.|+...++.|
T Consensus 57 -~i~~~~~~~~~l~----~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~--~~d~r~n~~~g~~~~~~~l 129 (190)
T PF08443_consen 57 -LINSPDELESLLD----AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP--EGDFRTNLSRGGKVEPYDL 129 (190)
T ss_dssp -EEESHCHHHHHHH---------TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------EE---
T ss_pred -EecCHHHHHHHHH----HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC--cccchhhhccCceEEEecC
Confidence 5555544444444 32 35788899999999 67999999999999999999997 9999999998888899999
Q ss_pred CHHHHHHHHHHHHHhCCeeeeEeeeeeCCCeEEEeecCceecccc
Q 001667 251 TPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS 295 (1034)
Q Consensus 251 t~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNGwSFVK~n 295 (1034)
+++++++|.++++++|+++|||||+++++++||||||.+.-.++.
T Consensus 130 ~~e~~~~a~~~~~~lgl~~~giDi~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 130 PEEIKELALKAARALGLDFAGIDILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEETT---TTH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEecCCchHhHH
Confidence 999999999999999999999999999999999999987755554
No 4
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.90 E-value=2.8e-23 Score=224.55 Aligned_cols=247 Identities=20% Similarity=0.288 Sum_probs=182.8
Q ss_pred EEEEeecCcccCChhHHHHHHHhhccCCeEEEEeCc-ceeec--CC-------CcccCCcCeeeccccCC--CchHHHHH
Q 001667 8 TIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGD-KVILE--DP-------IEKWPICDCLIAFYSSG--YPLEKAES 75 (1034)
Q Consensus 8 ~iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiFgd-~vIL~--e~-------ve~wP~~D~lIsf~s~g--fpl~kai~ 75 (1034)
+|||-+.+....| -+.+++-+.+.| ++++++.- +..++ .. ......+|++|++.... +.-....+
T Consensus 2 ~~~i~~~~~s~~s--~~~~~~a~~~~g-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 78 (300)
T PRK10446 2 KIAILSRDGTLYS--CKRLREAAIQRG-HLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALR 78 (300)
T ss_pred eEEEEecCCcchh--HHHHHHHHHHcC-CeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHH
Confidence 4677766655444 345555555545 66655543 22221 11 12345789999976543 22244577
Q ss_pred HHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccc
Q 001667 76 YATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHG 154 (1034)
Q Consensus 76 y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~g 154 (1034)
.++..+|+++|+..+..+.+||..++++|+++|||+|++.++... . +..+.+. .+| .|+|+||++|
T Consensus 79 ~le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~~~~~~----~P~VvKP~~g 145 (300)
T PRK10446 79 QFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSP--D-------DTSDLIDMVGG----APLVVKLVEG 145 (300)
T ss_pred HHHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCH--H-------HHHHHHHHhCC----CCEEEEECCC
Confidence 899999999999999999999999999999999999999987541 1 1112221 223 6999999999
Q ss_pred cCcceEEEeccCCCChHHHHHhhhCCCcccccCCcccc-ccccceEEeeccCC-CCeeeEEEEECCceEEEeeccCCCCC
Q 001667 155 DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVD 232 (1034)
Q Consensus 155 edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~-r~~gsyIyEEFi~~-~G~DVKvytVG~~~vhAe~RKSPvvD 232 (1034)
. .|.|+. +++........++ .. ..+..+|+||||+. .|.|+||+++|+++++|+.|.++ .
T Consensus 146 ~-----------~g~GV~-~v~~~~~~~~~~~----~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~--~ 207 (300)
T PRK10446 146 T-----------QGIGVV-LAETRQAAESVID----AFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAK--E 207 (300)
T ss_pred C-----------CcccEE-EEcCHHHHHHHHH----HHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecC--C
Confidence 7 666664 3332221112222 11 23457999999988 79999999999999999999886 6
Q ss_pred CeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeCCCeEEEeecC
Q 001667 233 GVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNG 288 (1034)
Q Consensus 233 G~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNG 288 (1034)
|.|+.|.+.|+..++..|+++.+++|.++++++|..++|||++...+|+||+|||.
T Consensus 208 ~~~~~n~~~g~~~~~~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~~g~~vlEvN~ 263 (300)
T PRK10446 208 GDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNA 263 (300)
T ss_pred CchhheeccCCeeccCCCCHHHHHHHHHHHHHhCCCEEEEEEEEcCCCcEEEEEEC
Confidence 89999999888899999999999999999999999999999999987899999993
No 5
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.87 E-value=1.3e-21 Score=204.95 Aligned_cols=248 Identities=21% Similarity=0.238 Sum_probs=177.8
Q ss_pred EEEeecCcccCChhHHHHHHHhhccCCeEEEEeCc---ceeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCccc
Q 001667 9 IGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGD---KVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLV 85 (1034)
Q Consensus 9 iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiFgd---~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~i 85 (1034)
|||++=.... =++.+.+.+.+.| +++.+|.- .+-++..-..||.+|+++.+...+..-..+.+.++..+..++
T Consensus 2 ~~~~~~~~~~---~~~~l~~a~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~ 77 (277)
T TIGR00768 2 LAILYDRIRL---DEKMLKEAAEELG-IDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGVPVI 77 (277)
T ss_pred EEEEEcCCCH---HHHHHHHHHHHcC-CceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHCCCeee
Confidence 6777654332 4455555555555 66666653 233333223489999999987544444467788888998889
Q ss_pred CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEecc
Q 001667 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (1034)
Q Consensus 86 Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~ 165 (1034)
|+..+..+.+||+..+++|+++|||+|++..+... . +....+. .++.|+|+||..|.
T Consensus 78 ~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~--~-------~~~~~~~----~~~~p~vvKP~~g~---------- 134 (277)
T TIGR00768 78 NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSP--E-------EALKLIE----EIGFPVVLKPVFGS---------- 134 (277)
T ss_pred CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCH--H-------HHHHHHH----hcCCCEEEEECcCC----------
Confidence 99999999999999999999999999999988652 1 1122222 12359999999986
Q ss_pred CCCChHHHHHhhhCCCcccccCCcccc-ccccceEEeeccCC-CCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCc
Q 001667 166 SAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE 243 (1034)
Q Consensus 166 ~~GgG~~~Lfrkign~sS~~~p~~~~~-r~~gsyIyEEFi~~-~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke 243 (1034)
.|.|+. +++........+. .+... .....||+||||+. .|.|++|+++|+++++++.|.. .+.++.|.+.++
T Consensus 135 -~g~gv~-~i~~~~~l~~~~~-~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~---~~~~~~n~~~g~ 208 (277)
T TIGR00768 135 -WGRLVS-LARDKQAAETLLE-HFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRIT---SGHWRTNLARGG 208 (277)
T ss_pred -CCCceE-EEcCHHHHHHHHH-HHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcC---CCchhhhhhcCC
Confidence 344442 2221111011111 00001 11257999999998 5699999999999999998873 678999999888
Q ss_pred eeeeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeC-CCeEEEeecCc
Q 001667 244 VRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNGW 289 (1034)
Q Consensus 244 ~r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~-g~s~V~DVNGw 289 (1034)
...++.|+++.+++|.++++++|..+||||++.+. |++||+|||..
T Consensus 209 ~~~~~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~~g~~~viEiN~~ 255 (277)
T TIGR00768 209 KAEPCPLTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPN 255 (277)
T ss_pred eeeecCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCCCCeEEEEEcCC
Confidence 88899999999999999999999999999999985 48999999963
No 6
>PRK05246 glutathione synthetase; Provisional
Probab=99.85 E-value=9e-22 Score=215.15 Aligned_cols=197 Identities=16% Similarity=0.187 Sum_probs=154.5
Q ss_pred cccCCcCeeeccccCCCch-----HHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccc
Q 001667 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (1034)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~ 126 (1034)
-.||.+|+++.+-...|+. ...+++++.++..++|+..+.....||+..++++. ++|.|.+.+.. .
T Consensus 75 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~--~--- 145 (316)
T PRK05246 75 LPLADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK--A--- 145 (316)
T ss_pred CccccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH--H---
Confidence 4578899999886555552 45788999899999999999999999999999766 89999887651 1
Q ss_pred ccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhh-CCCcccccCCccccc--cccceEEeec
Q 001667 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV-GNRSSEFHPDVRRVR--REGSYIYEEF 203 (1034)
Q Consensus 127 ~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrki-gn~sS~~~p~~~~~r--~~gsyIyEEF 203 (1034)
...+.+.-.| |+|+||+.|. +|.|+.+ .++- .+..+.++ ... ....||.|+|
T Consensus 146 ----~~~~~~~~~~-----~vVlKP~~G~-----------~G~gV~~-i~~~~~~~~~~~~----~l~~~~~~~~lvQ~~ 200 (316)
T PRK05246 146 ----EIRAFRAEHG-----DIILKPLDGM-----------GGAGIFR-VKADDPNLGSILE----TLTEHGREPVMAQRY 200 (316)
T ss_pred ----HHHHHHHHCC-----CEEEEECCCC-----------CccceEE-EeCCCccHHHHHH----HHHHccCCeEEEEec
Confidence 1223333223 8999999997 6666642 2211 11111222 222 2468999999
Q ss_pred cCC-CCeeeEEEEECCceEE-EeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhCCeeeeEeeeeeC
Q 001667 204 MPT-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCE 278 (1034)
Q Consensus 204 i~~-~G~DVKvytVG~~~vh-Ae~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~---~afgq~VCGfDLLRs~ 278 (1034)
|+. .+.|+||+++|++++| |+.|.++ .|.||.|.|.|+...++.||++|++||.+++ ++.|+..|||||+
T Consensus 201 I~~~~~~D~Rv~vv~g~vv~~a~~R~~~--~~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli--- 275 (316)
T PRK05246 201 LPEIKEGDKRILLVDGEPVGYALARIPA--GGETRGNLAAGGRGEATPLTERDREICAAIGPELKERGLIFVGIDVI--- 275 (316)
T ss_pred cccCCCCCEEEEEECCEEhhheeEecCC--CCCcccCccCCceEeccCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe---
Confidence 998 6789999999999999 9999986 7999999999999999999999999999999 5779999999999
Q ss_pred CCeEEEeecC
Q 001667 279 GRSYVCDVNG 288 (1034)
Q Consensus 279 g~s~V~DVNG 288 (1034)
+.||+|||.
T Consensus 276 -~~~l~EvN~ 284 (316)
T PRK05246 276 -GDYLTEINV 284 (316)
T ss_pred -CCEEEEEeC
Confidence 458999993
No 7
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.85 E-value=3.1e-20 Score=205.52 Aligned_cols=266 Identities=20% Similarity=0.225 Sum_probs=185.1
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHH-HcCC
Q 001667 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT-LRKP 82 (1034)
Q Consensus 4 ~~~~~iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiFgd~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~-lr~p 82 (1034)
.+..+||-|--.||.+|==-..|+..+.+.| ++++--..+- |++.=-.+|++|-...+-.=-....+|.. -.+.
T Consensus 19 ~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~G-i~~v~Id~~~----pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 19 QKRFVVGYALTPKKVKSFLQPSLEALARSKG-IDLVAIDPSR----PLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred CCceEEEEEECHHHHHHHhhHHHHHHHHHCC-CeEEEecCCC----CccccCCcCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 3578999888888888766666777777665 5554443332 44322247999988754321233444543 3457
Q ss_pred cccCCcchhhHHhhHHHHHHHHHhCC-------CCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeecccc
Q 001667 83 FLVNELEPQHLLHDRRKVYEQLEKYG-------IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (1034)
Q Consensus 83 ~~iNdl~~q~~l~DR~~vlqiL~~~g-------Ip~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~ge 155 (1034)
.+||.+.++..+.||...+++|++.| ||+|+++++...... ........ .++.|+|.||+-|.
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~a--------l~~~~~~~--~l~~P~V~KPl~g~ 163 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESS--------IPDAVALA--GLKFPLVAKPLVAD 163 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHH--------HHHHHHHh--cCCCCEEEeecccC
Confidence 89999999999999999999999999 999999999873100 00001122 24679999999992
Q ss_pred CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCee
Q 001667 156 DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVV 235 (1034)
Q Consensus 156 dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~v 235 (1034)
. ++.|-|+..+|..- + ....+..|+.||||.-+|.|+||||||+.+ +|+.|+| .+.+
T Consensus 164 G--------ss~gh~m~lv~~~~----~-------L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v-~~~~R~S---~~n~ 220 (328)
T PLN02941 164 G--------SAKSHKMSLAYDQE----G-------LSKLEPPLVLQEFVNHGGVLFKVYVVGDYV-KCVRRFS---LPDV 220 (328)
T ss_pred C--------CccccceEEecCHH----H-------HHhcCCcEEEEEecCCCCEEEEEEEECCEE-EEEEecC---Cccc
Confidence 0 22454443222211 0 011344699999999999999999999995 9999998 5666
Q ss_pred e---ecCCCC----------------ce-------eeeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeC---CCeEEEee
Q 001667 236 M---RNPDGK----------------EV-------RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE---GRSYVCDV 286 (1034)
Q Consensus 236 r---rN~hgk----------------e~-------r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~---g~s~V~DV 286 (1034)
+ .|++.| +. ..+...+++=+++|.++++++|+.++||||+|.. ++.+|+||
T Consensus 221 ~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidV 300 (328)
T PLN02941 221 SEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDI 300 (328)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEe
Confidence 6 677755 22 3344455678899999999999999999999996 47899999
Q ss_pred cCceecccchhhHHHHHHHHH
Q 001667 287 NGWSFVKNSYKYYDDAACVLR 307 (1034)
Q Consensus 287 NGwSFVK~n~kYYDdcA~iL~ 307 (1034)
|++==-|+-..|+..-.+.|.
T Consensus 301 N~fP~~k~~p~~~~~l~~~~~ 321 (328)
T PLN02941 301 NYFPGYAKMPGYETVLTDFLL 321 (328)
T ss_pred cCCCccccCCchHHHHHHHHH
Confidence 977656777888854443333
No 8
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.84 E-value=8.8e-21 Score=200.84 Aligned_cols=236 Identities=19% Similarity=0.198 Sum_probs=169.9
Q ss_pred hHHHHHHHhhccCCeEEE-EeCcc--eeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHH
Q 001667 22 PMGQILDRLQAFGEFEVI-HFGDK--VILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRR 98 (1034)
Q Consensus 22 Pm~~IL~RL~~~~~fevi-iFgd~--vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~ 98 (1034)
.++.+..-|.+.| +++. +.-++ +-++++...|..||++|.+-..+...-.....++..+..++|+.....+.+||.
T Consensus 11 ~~~~l~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n~~~~~~~~~dK~ 89 (280)
T TIGR02144 11 DEKMLIEELEKLG-LPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVINSSHVIEACGDKI 89 (280)
T ss_pred HHHHHHHHHHHcC-CceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEECcHHHHHHHhhHH
Confidence 3556666666655 4433 23333 344666679999999998743333223445667888988899999999999999
Q ss_pred HHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhh
Q 001667 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 178 (1034)
Q Consensus 99 ~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrki 178 (1034)
..+++|+++|||+|.+..+... . +..+.+. .++.|+|+||..|. .|.|+. ++...
T Consensus 90 ~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~~----~~~~P~vvKP~~g~-----------~g~gv~-~v~~~ 144 (280)
T TIGR02144 90 FTYLKLAKAGVPTPRTYLAFDR--E-------AALKLAE----ALGYPVVLKPVIGS-----------WGRLVA-LIRDK 144 (280)
T ss_pred HHHHHHHHCCcCCCCeEeeCCH--H-------HHHHHHH----HcCCCEEEEECcCC-----------CcCCEE-EECCH
Confidence 9999999999999999988641 1 1111111 13469999999985 344442 11111
Q ss_pred CCCcccccCCcccc--ccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHH
Q 001667 179 GNRSSEFHPDVRRV--RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ 256 (1034)
Q Consensus 179 gn~sS~~~p~~~~~--r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~ 256 (1034)
......+.. .... ..+..+|+||||+..|.|++++++|+.++|++.|.+ +.++.|.+.++...++.++++.++
T Consensus 145 ~~l~~~~~~-~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~----~~~~~~~~~g~~~~~~~~~~~~~~ 219 (280)
T TIGR02144 145 DELESLLEH-KEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS----NHWRTNTARGGKAEPCPLDEEVEE 219 (280)
T ss_pred HHHHHHHHH-HHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC----CchhhhhhcCCceeccCCCHHHHH
Confidence 000000000 0001 124579999999977899999999999999999876 678889887778889999999999
Q ss_pred HHHHHHHHhCCeeeeEeeeeeC-CCeEEEeecC
Q 001667 257 MAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNG 288 (1034)
Q Consensus 257 iA~k~~~afgq~VCGfDLLRs~-g~s~V~DVNG 288 (1034)
+|.++++++|..++|||+++.. |++||+|||.
T Consensus 220 ~a~~~~~~lg~~~~~vD~~~~~~g~~~v~EvN~ 252 (280)
T TIGR02144 220 LAVKAAEAVGGGVVAIDIFESKERGLLVNEVNH 252 (280)
T ss_pred HHHHHHHHhCCCeEEEEEEEcCCCCEEEEEEeC
Confidence 9999999999999999999984 5899999995
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.84 E-value=2.9e-21 Score=211.29 Aligned_cols=197 Identities=16% Similarity=0.198 Sum_probs=153.2
Q ss_pred cccCCcCeeeccccCCCch-----HHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccc
Q 001667 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (1034)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~ 126 (1034)
-.|+.+|++|.+-...|.. ...+++++..+..++|+..+.....||...++++. ++|.|++.+...
T Consensus 74 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~~----- 144 (312)
T TIGR01380 74 LSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDKA----- 144 (312)
T ss_pred cccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCHH-----
Confidence 4588999999987665553 46889999999999999999999999998888763 899999876521
Q ss_pred ccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhh-hCCCcccccCCccccc--cccceEEeec
Q 001667 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK-VGNRSSEFHPDVRRVR--REGSYIYEEF 203 (1034)
Q Consensus 127 ~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrk-ign~sS~~~p~~~~~r--~~gsyIyEEF 203 (1034)
+..+.+.-.| |+|+||+.|. .|.|+.+ ++. -.+.++..+ ... ....|++|+|
T Consensus 145 ----~~~~~~~~~g-----~vVvKPl~G~-----------~G~gv~~-v~~~~~~~~~~~~----~~~~~~~~~~~vQ~y 199 (312)
T TIGR01380 145 ----EIRAFLAEHG-----DIVLKPLDGM-----------GGEGIFR-LDPGDPNFNSILE----TMTQRGREPVMAQRY 199 (312)
T ss_pred ----HHHHHHHHcC-----CEEEEECCCC-----------CCceEEE-EcCCCccHHHHHH----HHHhccCCcEEEEec
Confidence 1222232222 8999999997 6666642 221 111111111 111 2357999999
Q ss_pred cCC-CCeeeEEEEECCceE-EEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhCCeeeeEeeeeeC
Q 001667 204 MPT-GGTDVKVYTVGPEYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCE 278 (1034)
Q Consensus 204 i~~-~G~DVKvytVG~~~v-hAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~---~afgq~VCGfDLLRs~ 278 (1034)
|++ .+.|+||++||++++ ||+.|.++ +|+||.|.+.|+...++.||++|+++|.+++ +++|+..||||||
T Consensus 200 I~~~~~~D~Rv~vv~g~vv~~ai~R~~~--~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~~~gl~~agVDii--- 274 (312)
T TIGR01380 200 LPEIKEGDKRILLIDGEPIGAAVARIPA--GGEFRGNLAVGGRGEATELSERDREICADVAPELKRRGLLFVGIDVI--- 274 (312)
T ss_pred cccccCCCEEEEEECCeEEEEEEEecCC--CCCccccccCCceeeccCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe---
Confidence 998 778999999999965 69999986 8999999999899999999999999999998 7789999999999
Q ss_pred CCeEEEeecC
Q 001667 279 GRSYVCDVNG 288 (1034)
Q Consensus 279 g~s~V~DVNG 288 (1034)
++||+|||.
T Consensus 275 -g~~v~EvN~ 283 (312)
T TIGR01380 275 -GGYLTEVNV 283 (312)
T ss_pred -CCEEEEEec
Confidence 479999995
No 10
>PRK12458 glutathione synthetase; Provisional
Probab=99.82 E-value=2.4e-20 Score=206.73 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=151.2
Q ss_pred cccCCcCeeeccccCCCch--HHHHHH--------HHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccC
Q 001667 52 EKWPICDCLIAFYSSGYPL--EKAESY--------ATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREV 121 (1034)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl--~kai~y--------~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~ 121 (1034)
-.|..+|+++.+-...|.. ...+.+ ++..+.+++|+........||+..+++++ +++|.|++.+..
T Consensus 75 ~~l~~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 75 LPLAGFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNK- 150 (338)
T ss_pred CchhhCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCH-
Confidence 3578899999887655544 223333 36778999999999999999998866544 789999987551
Q ss_pred CCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhC--CCcccccCCccccccccce
Q 001667 122 PYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG--NRSSEFHPDVRRVRREGSY 198 (1034)
Q Consensus 122 p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkig--n~sS~~~p~~~~~r~~gsy 198 (1034)
. +..+.+. .+| .|+|+||++|. .|.|+. +.+.-. |..+.++ .....+.+
T Consensus 151 -~-------~~~~~~~~~~~----~pvVvKPl~G~-----------gG~gV~-~v~~~~~~~~~~ile----~~~~~~~~ 202 (338)
T PRK12458 151 -E-------YIREFLEESPG----DKMILKPLQGS-----------GGQGVF-LIEKSAQSNLNQILE----FYSGDGYV 202 (338)
T ss_pred -H-------HHHHHHHHcCC----CeEEEEECCCC-----------CccCeE-EEecCChhhHHHHHH----HHhhCCCE
Confidence 1 1222332 343 36999999997 666664 222111 1122222 22236689
Q ss_pred EEeeccCC-CCeeeEEEEECCceE------EEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh---CCe
Q 001667 199 IYEEFMPT-GGTDVKVYTVGPEYA------HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQA 268 (1034)
Q Consensus 199 IyEEFi~~-~G~DVKvytVG~~~v------hAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~af---gq~ 268 (1034)
|+||||++ .+-|+||++||++++ ||+.|.++ .|+||.|.+-|+...++.||++++++|.+++.++ |+.
T Consensus 203 ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~--~~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~ 280 (338)
T PRK12458 203 IAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPA--GGDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLF 280 (338)
T ss_pred EEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecC--CCCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCe
Confidence 99999998 778999999999999 99999885 7999999998888899999999999999999988 999
Q ss_pred eeeEeeeeeCCCeEEEeecC
Q 001667 269 VCGFDLLRCEGRSYVCDVNG 288 (1034)
Q Consensus 269 VCGfDLLRs~g~s~V~DVNG 288 (1034)
+||+|++ +.+|+|||-
T Consensus 281 ~~gVDli----~~~l~EIN~ 296 (338)
T PRK12458 281 FVGLDIV----GDKLVEVNV 296 (338)
T ss_pred EEeEEEE----CCEEEEEeC
Confidence 9999999 568999994
No 11
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=99.80 E-value=1.8e-18 Score=184.40 Aligned_cols=151 Identities=22% Similarity=0.359 Sum_probs=105.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccccCccccCCCCcchhccccccccccccccccHHHHHHHHHHhcceeccccccCCchh
Q 001667 676 CGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQ 755 (1034)
Q Consensus 676 c~gE~~~L~~eRW~KL~~dF~~~k~~kfD~SKIpdiYD~iKYD~lHN~~l~l~~l~ELY~laK~LaD~V~PqEYGI~~~E 755 (1034)
|.|+....+...|..++..+|.. ...+.+++|++|+.+++|++++..+ ..+.++|.. ||.+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~~ 260 (347)
T PF00328_consen 197 IPGEDNLTFFDVWAIFDDCLYEQ--IYNDGSPFPEWFTDMKEDALQLEYL--EDLKEYYQY------------YGYSDEI 260 (347)
T ss_dssp STTCEECTHHHHHHHHHHHHHHH--HHHTT-GGGGGSCHTSHHHHHHHHH--HHHHHHHHH------------CSTTHHH
T ss_pred cCccccccchhhhhhhhhhhhhh--ccCCCCCCchhhcccchHHHHHHhh--hhHHHHhhc------------ccCCchH
Confidence 56666667899999999999865 2689999999999999999998773 334555655 8888874
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHhHHhhhccccccccccccccccCCCCCCccccccccccCCCCccCCCCCCCCC
Q 001667 756 KLKIGSKIARRLLGKLLIDLRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADDTRRSSTTSDISMDQDDD 835 (1034)
Q Consensus 756 Kl~IG~~i~~pLL~KI~~DL~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1034)
+...+.|||+.|+..+...-.. .
T Consensus 261 ----~~~~~~~ll~~ll~~l~~~~~~-----------------------------------~------------------ 283 (347)
T PF00328_consen 261 ----ARLQGGPLLNELLRRLKQAING-----------------------------------N------------------ 283 (347)
T ss_dssp ----HHHHHHHHHHHHHHHHHHCHSS-----------------------------------T------------------
T ss_pred ----HHHHHhHHHHHHHHHHhhcccc-----------------------------------c------------------
Confidence 5566678888888877753200 0
Q ss_pred cccccccccCcccCCCCCCccceeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceE
Q 001667 836 DDKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVL 915 (1034)
Q Consensus 836 ~~~E~~~RL~p~ya~V~SP~RhvRTrlYFTsESHIhSLLNvlr~g~l~~~~~~~~~~i~~~A~~~l~~i~ELdYLSqIvf 915 (1034)
++.+..|-.+||+..+.|..||.+| |+.....+. .. .--.|-|+|+|
T Consensus 284 -----------------~~~~~~k~~~~s~HD~tl~~ll~~L---gl~~~~~~~-----------~~--~~pp~as~l~f 330 (347)
T PF00328_consen 284 -----------------SPGRPPKLVLYSGHDTTLMPLLSAL---GLDNYSPPY-----------QS--YWPPYASNLVF 330 (347)
T ss_dssp -----------------CSCSSCSEEEEEE-HHHHHHHHHHT---TCTTTSTTT-----------HS--SCSSTT-EEEE
T ss_pred -----------------cccccceEEEEecCHHHHHHHHHHh---CCCccCccc-----------cC--CCCCccceeEE
Confidence 0122367899999999999999999 455432110 01 33468899999
Q ss_pred EEEecCCCCCCCCCeeEEEEEec
Q 001667 916 RMFENTAVALEDPKRFRIELTFS 938 (1034)
Q Consensus 916 ~lYE~~~~~~~~~~rf~Iei~~S 938 (1034)
|||++ +.+.|.||+.+.
T Consensus 331 El~~~------~~~~~~Vr~~yN 347 (347)
T PF00328_consen 331 ELYRD------SGKNYYVRVLYN 347 (347)
T ss_dssp EEEEE------TTTEEEEEEEET
T ss_pred EEEEe------CCCcEEEEEEEC
Confidence 99998 223499999874
No 12
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.67 E-value=5.7e-17 Score=190.15 Aligned_cols=177 Identities=24% Similarity=0.378 Sum_probs=133.3
Q ss_pred ccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEe
Q 001667 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (1034)
Q Consensus 84 ~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYy 163 (1034)
.+|+..+..+..||..+.++|+++|||+|.+.+++.. . +..+.+.-.| |+|+||++|.
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~--~-------~~~~~~~~~G-----~vVVKP~~G~-------- 342 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG--E-------AVEAFLAEHG-----AVVVKPVRGE-------- 342 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH--H-------HHHHHHHHhC-----CEEEEECCCC--------
Confidence 6678888999999999999999999999999998752 1 1112222123 7999999998
Q ss_pred ccCCCChHHHHHhhhCCCcccccCCccc-cccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCC--CCe------
Q 001667 164 PSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (1034)
Q Consensus 164 p~~~GgG~~~Lfrkign~sS~~~p~~~~-~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvv--DG~------ 234 (1034)
+|.|+. + .+.+... +..-+.. .+....+|.|+|++ |.|+||+|||+++++|+.|..|-+ ||.
T Consensus 343 ---~G~Gv~-v--~v~~~~e-L~~a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~L 413 (547)
T TIGR03103 343 ---QGKGIS-V--DVRTPDD-LEAAIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDL 413 (547)
T ss_pred ---CCcCeE-E--ecCCHHH-HHHHHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHH
Confidence 777774 3 1222211 1110111 23455899999995 999999999999999999998743 331
Q ss_pred ------------------------------------------------eeecCCCCceeeee--eCCHHHHHHHHHHHHH
Q 001667 235 ------------------------------------------------VMRNPDGKEVRYPV--LLTPNEKQMAREVCIA 264 (1034)
Q Consensus 235 ------------------------------------------------vrrN~hgke~r~~v--~Lt~~Ek~iA~k~~~a 264 (1034)
.+.|+|-|+....| .+.|+.+++|.++|++
T Consensus 414 ie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~ 493 (547)
T TIGR03103 414 IEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARA 493 (547)
T ss_pred HHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHH
Confidence 15788877777777 7999999999999999
Q ss_pred hCCeeeeEeeeeeC-CCe--EEEeec---Ccee
Q 001667 265 FRQAVCGFDLLRCE-GRS--YVCDVN---GWSF 291 (1034)
Q Consensus 265 fgq~VCGfDLLRs~-g~s--~V~DVN---GwSF 291 (1034)
+|+.||||||+... .+| +||||| |+.-
T Consensus 494 ~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~ 526 (547)
T TIGR03103 494 LDIPVVGIDFLVPDVTGPDYVIIEANERPGLAN 526 (547)
T ss_pred hCCCeEEEEEEeccCCCCCeEEEEecCCccccc
Confidence 99999999999874 556 999999 6553
No 13
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.67 E-value=1.7e-16 Score=175.31 Aligned_cols=180 Identities=17% Similarity=0.133 Sum_probs=131.1
Q ss_pred ccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEE
Q 001667 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIY 162 (1034)
Q Consensus 84 ~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~IY 162 (1034)
..|+=+.-.++.||..+.++|.++|||+|.|..+....- ..++... +.+ ..|+|+||++|+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~--------~~~~l~~~~~~---~~~VVVKPl~Gs------- 86 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQA--------EVKTIHNIVKD---HPDFVIKPAQGS------- 86 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchh--------hHHHHHHHHcc---CCCEEEEECCCC-------
Confidence 357778888999999999999999999999887665210 1122222 333 247999999999
Q ss_pred eccCCCChHHHHHhhhCCCc------cc-----ccCC----ccc-cccc--cceEEeeccCC-C----------CeeeEE
Q 001667 163 YPSSAGGGMKELFRKVGNRS------SE-----FHPD----VRR-VRRE--GSYIYEEFMPT-G----------GTDVKV 213 (1034)
Q Consensus 163 yp~~~GgG~~~Lfrkign~s------S~-----~~p~----~~~-~r~~--gsyIyEEFi~~-~----------G~DVKv 213 (1034)
+|.|+. +.+...+.. .+ ++.. +.. .... ..+.|+||+-. + +.||||
T Consensus 87 ----~GrGI~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV 161 (317)
T TIGR02291 87 ----GGKGIL-VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRI 161 (317)
T ss_pred ----CccCeE-EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEE
Confidence 999985 554432211 01 1100 000 1112 22344466433 2 379999
Q ss_pred EEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCC--------------------------------HHHHHHHHHH
Q 001667 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT--------------------------------PNEKQMAREV 261 (1034)
Q Consensus 214 ytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt--------------------------------~~Ek~iA~k~ 261 (1034)
+|||++.++||.|.+. -.|.++.|.|.|++..++.|. ++-.++|.+|
T Consensus 162 ~vv~~~~vaa~~R~~~-~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 162 IVFKGYPVMAMMRLPT-RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred EEECCEEEEEEEEccC-ccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 9999999999999762 357899999999999999986 5667999999
Q ss_pred HHHhCCeeeeEeeeee-CCCeEEEeec
Q 001667 262 CIAFRQAVCGFDLLRC-EGRSYVCDVN 287 (1034)
Q Consensus 262 ~~afgq~VCGfDLLRs-~g~s~V~DVN 287 (1034)
++++|+.++|+|++.+ .++++|+|||
T Consensus 241 ~~~~g~~~~GvDii~~~~~g~~VlEVN 267 (317)
T TIGR02291 241 WELTGLGYMGVDMVLDKEEGPLVLELN 267 (317)
T ss_pred HHhcCCCeEEEEEEEeCCCCEEEEEeC
Confidence 9999999999999986 7899999999
No 14
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.61 E-value=9.2e-15 Score=157.39 Aligned_cols=245 Identities=16% Similarity=0.176 Sum_probs=164.4
Q ss_pred eeEEEEee------cCcccCChhHHHHHHHhhccCCeEEEEeCc-ceeecCCCcccCCcCeeeccccCCCchH-HHHHHH
Q 001667 6 KITIGVCV------MEKKVFSAPMGQILDRLQAFGEFEVIHFGD-KVILEDPIEKWPICDCLIAFYSSGYPLE-KAESYA 77 (1034)
Q Consensus 6 ~~~iGVCA------Md~Ka~SkPm~~IL~RL~~~~~feviiFgd-~vIL~e~ve~wP~~D~lIsf~s~gfpl~-kai~y~ 77 (1034)
+++|+||+ -+....|. +.|++=|.+.| +++++... +-+++ +-.+..+|+++..+...+..+ .+-..+
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~--~~i~~al~~~g-~~v~~i~~~~~~~~--~~~~~~~D~v~~~~~g~~~~~~~~~~~l 78 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSG--AAVLAALREAG-YDAHPIDPGEDIAA--QLKELGFDRVFNALHGRGGEDGTIQGLL 78 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhH--HHHHHHHHHCC-CEEEEEecCcchHH--HhccCCCCEEEEecCCCCCCccHHHHHH
Confidence 45788888 45544443 66777776644 66666632 22222 122457899998876545442 344566
Q ss_pred HHcCCcccC-CcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccC
Q 001667 78 TLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (1034)
Q Consensus 78 ~lr~p~~iN-dl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~ged 156 (1034)
+..+...+| +.....+..||....++|+++|||+|++..+.... +....+. .++.|+|+||..|.
T Consensus 79 e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~---------~~~~~~~----~~~~P~ivKP~~g~- 144 (304)
T PRK01372 79 ELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREE---------DLLAAID----KLGLPLVVKPAREG- 144 (304)
T ss_pred HHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcc---------hHHHHHh----hcCCCEEEeeCCCC-
Confidence 777765554 57888999999999999999999999999987721 1111111 23469999999985
Q ss_pred cceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCC--
Q 001667 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG-- 233 (1034)
Q Consensus 157 Hni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG-- 233 (1034)
.|.|+. ++.|.....+ -+. .......+|+|||++ |.++.|.++|+.+.++..+..+ .|
T Consensus 145 ----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~--~~~~ 205 (304)
T PRK01372 145 ----------SSVGVS----KVKEEDELQA-ALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA--GEFY 205 (304)
T ss_pred ----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEec--CCEE
Confidence 344442 1212111100 000 011256799999997 8999999999999888877763 44
Q ss_pred eeeecCCCCceee--eeeCCHHH----HHHHHHHHHHhCCe-eeeEeeeeeC-CCeEEEeecC
Q 001667 234 VVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNG 288 (1034)
Q Consensus 234 ~vrrN~hgke~r~--~v~Lt~~E----k~iA~k~~~afgq~-VCGfDLLRs~-g~s~V~DVNG 288 (1034)
.++.+.+.++..+ |..+++++ +++|.+++++||.. +|+||++... |++||+|||.
T Consensus 206 ~~~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~ 268 (304)
T PRK01372 206 DYEAKYLAGGTQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNT 268 (304)
T ss_pred eeeccccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecC
Confidence 4566776555443 34577654 57899999999985 8999999997 7799999994
No 15
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.58 E-value=1.9e-15 Score=185.51 Aligned_cols=173 Identities=20% Similarity=0.302 Sum_probs=127.1
Q ss_pred CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEecc
Q 001667 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (1034)
Q Consensus 86 Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~ 165 (1034)
++..+-.+.+||..+.++|+++|||+|.+.++.... +..+.+. .++.|+|+||.+|.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~---------ea~~~~~----~ig~PvVVKP~~g~---------- 259 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAE---------DAWEAAQ----DLGYPVVIKPYDGN---------- 259 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHH----HcCCCEEEEECCCC----------
Confidence 456677899999999999999999999999886621 1222221 12369999999996
Q ss_pred CCCChHHHH-HhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCC-----------
Q 001667 166 SAGGGMKEL-FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG----------- 233 (1034)
Q Consensus 166 ~~GgG~~~L-frkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG----------- 233 (1034)
+|.|+. + .+........|.- .......+|+|+|++ |.|+||+|||+++++|+.|.+|-|-|
T Consensus 260 -~G~GV~-l~v~s~~el~~a~~~---a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~ 332 (864)
T TIGR02068 260 -HGRGVT-INILTRDEIESAYEA---AVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIE 332 (864)
T ss_pred -CccCEE-EEeCCHHHHHHHHHH---HHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHH
Confidence 555653 2 1111100111110 112346799999996 89999999999999999999997655
Q ss_pred -------------------------------------------e---e--eecCCCCceeeee--eCCHHHHHHHHHHHH
Q 001667 234 -------------------------------------------V---V--MRNPDGKEVRYPV--LLTPNEKQMAREVCI 263 (1034)
Q Consensus 234 -------------------------------------------~---v--rrN~hgke~r~~v--~Lt~~Ek~iA~k~~~ 263 (1034)
. + ++|.+-|+...-+ .++|+.+++|.++|+
T Consensus 333 ~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~ 412 (864)
T TIGR02068 333 QINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAK 412 (864)
T ss_pred HhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHH
Confidence 1 3 4677777777766 999999999999999
Q ss_pred HhCCeeeeEeeeee-------CCCeEEEeecC
Q 001667 264 AFRQAVCGFDLLRC-------EGRSYVCDVNG 288 (1034)
Q Consensus 264 afgq~VCGfDLLRs-------~g~s~V~DVNG 288 (1034)
++|+.||||||+-. ..+-.|||||+
T Consensus 413 ~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~ 444 (864)
T TIGR02068 413 IIGLDIAGVDIVTEDISRPLRDTDGAIVEVNA 444 (864)
T ss_pred HhCCCeEEEEEEecCCCCCccccCcEEEEEcC
Confidence 99999999999753 22338999993
No 16
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.57 E-value=2.5e-15 Score=181.56 Aligned_cols=176 Identities=20% Similarity=0.314 Sum_probs=130.7
Q ss_pred cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEE
Q 001667 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (1034)
Q Consensus 83 ~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IY 162 (1034)
.+-++..+..++.||..+.++|+++|||+|++..+.... +....+. .++.|+|+||.+|.
T Consensus 201 ~~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~---------~a~~~a~----~iG~PvVVKP~~G~------- 260 (727)
T PRK14016 201 TDQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAE---------DAWEAAE----EIGYPVVVKPLDGN------- 260 (727)
T ss_pred CCCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHH---------HHHHHHH----HcCCCEEEEECCCC-------
Confidence 356777788899999999999999999999999876521 1111121 23479999999997
Q ss_pred eccCCCChHHHH-HhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCC--e-----
Q 001667 163 YPSSAGGGMKEL-FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--V----- 234 (1034)
Q Consensus 163 yp~~~GgG~~~L-frkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG--~----- 234 (1034)
.|.|+. + .+....-...|+. ..+....+|+|+||+ |.|+||++||+++++|..|.+|-+-| .
T Consensus 261 ----~G~GV~-~~v~~~~el~~a~~~---a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~ 330 (727)
T PRK14016 261 ----HGRGVT-VNITTREEIEAAYAV---ASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRE 330 (727)
T ss_pred ----CCCceE-EecCCHHHHHHHHHH---HHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHH
Confidence 566663 2 1111111111110 112346899999997 89999999999999999999985422 2
Q ss_pred --------------------------------------------------ee--ecCCCCceeeeee--CCHHHHHHHHH
Q 001667 235 --------------------------------------------------VM--RNPDGKEVRYPVL--LTPNEKQMARE 260 (1034)
Q Consensus 235 --------------------------------------------------vr--rN~hgke~r~~v~--Lt~~Ek~iA~k 260 (1034)
+| .|.+.|+....+. ++|+-+++|.+
T Consensus 331 Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~ 410 (727)
T PRK14016 331 LIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAER 410 (727)
T ss_pred HHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHH
Confidence 23 3788777777775 99999999999
Q ss_pred HHHHhCCeeeeEeeeeeC-------CCeEEEeecC
Q 001667 261 VCIAFRQAVCGFDLLRCE-------GRSYVCDVNG 288 (1034)
Q Consensus 261 ~~~afgq~VCGfDLLRs~-------g~s~V~DVNG 288 (1034)
||+++|+.||||||+... .+..|||||.
T Consensus 411 aa~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~ 445 (727)
T PRK14016 411 AAKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNA 445 (727)
T ss_pred HHHhcCCCEEEEEEEecCcccccccCCcEEEEEcC
Confidence 999999999999998853 5669999994
No 17
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.47 E-value=6.1e-14 Score=170.01 Aligned_cols=179 Identities=20% Similarity=0.249 Sum_probs=126.1
Q ss_pred cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEE
Q 001667 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMI 161 (1034)
Q Consensus 83 ~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~I 161 (1034)
...|...+-.+.+||..+.++|+++|||+|++..+... . +..+.+. +.| .|+|+||++|.
T Consensus 475 t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~--e-------~a~~~~~~~~g----~PvVVKP~~g~------ 535 (752)
T PRK02471 475 TSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL--E-------EALADYSLFAD----KAIVVKPKSTN------ 535 (752)
T ss_pred cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH--H-------HHHHHHHHhcC----CCEEEEECCCC------
Confidence 34555556678889999999999999999999887651 1 1112221 233 69999999998
Q ss_pred EeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeee-----
Q 001667 162 YYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM----- 236 (1034)
Q Consensus 162 Yyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vr----- 236 (1034)
.|.|+. +++.+.+.......=-...+.+..+|+||||+ |.|+||+|||+++++|+.|.+|-|.|+=.
T Consensus 536 -----~G~GV~-~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~e 607 (752)
T PRK02471 536 -----FGLGIS-IFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRE 607 (752)
T ss_pred -----CcCCeE-EecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHH
Confidence 788874 66655444433331000223456799999995 99999999999999999999996655421
Q ss_pred ----ecC---CCCceeee-------------------------------------------------eeCCHHHHHHHHH
Q 001667 237 ----RNP---DGKEVRYP-------------------------------------------------VLLTPNEKQMARE 260 (1034)
Q Consensus 237 ----rN~---hgke~r~~-------------------------------------------------v~Lt~~Ek~iA~k 260 (1034)
.|. -|.+.+.| -.+.|+=+++|.+
T Consensus 608 Li~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~ 687 (752)
T PRK02471 608 LVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVK 687 (752)
T ss_pred HHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHH
Confidence 111 12221211 1456677899999
Q ss_pred HHHHhCCeeeeEeeeeeC-------C--CeEEEeecC
Q 001667 261 VCIAFRQAVCGFDLLRCE-------G--RSYVCDVNG 288 (1034)
Q Consensus 261 ~~~afgq~VCGfDLLRs~-------g--~s~V~DVNG 288 (1034)
||+++|+.||||||+-.. . +-.|||||+
T Consensus 688 aa~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~ 724 (752)
T PRK02471 688 AAKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNF 724 (752)
T ss_pred HHHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecC
Confidence 999999999999999653 1 557899994
No 18
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.40 E-value=2.4e-12 Score=139.17 Aligned_cols=212 Identities=15% Similarity=0.187 Sum_probs=132.3
Q ss_pred CCcCeeeccccCCCch-HHHHHHHHHcCCcccC-CcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccccc
Q 001667 55 PICDCLIAFYSSGYPL-EKAESYATLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (1034)
Q Consensus 55 P~~D~lIsf~s~gfpl-~kai~y~~lr~p~~iN-dl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~ 132 (1034)
..+|++++..-..+.. ..+-+.++..+...+| +..+..+.+||....++|+++|||+|++..+.++. . +.
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~-~-------~~ 133 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNR-A-------SA 133 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEeccc-c-------cc
Confidence 3579988854221222 3566788888855555 57899999999999999999999999999987321 0 00
Q ss_pred CCe-E-EEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCe
Q 001667 133 EDF-V-EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGT 209 (1034)
Q Consensus 133 ~d~-i-~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~ 209 (1034)
.+. + .+ ...+..|+|+||..|. .|.|+. ++.|... +..-+. ..+.+..+|+||||+ |.
T Consensus 134 ~~~~~~~~-~~~~~~P~vvKP~~~~-----------~s~Gv~----~v~~~~e-l~~~~~~~~~~~~~~lvEe~i~--G~ 194 (315)
T TIGR01205 134 DELECEQV-AEPLGFPVIVKPAREG-----------SSVGVS----KVKSEEE-LQAALDEAFEYDEEVLVEQFIK--GR 194 (315)
T ss_pred hhhhHHHH-HHhcCCCEEEEeCCCC-----------CccCEE----EECCHHH-HHHHHHHHHhcCCcEEEEcCCC--CE
Confidence 110 0 00 0123469999999985 333431 1111111 100000 112356799999995 99
Q ss_pred eeEEEEEC-CceEEEeeccCCCC-CCeeeecCCCCcee--eeeeCCHHH----HHHHHHHHHHhCC-eeeeEeeeeeC-C
Q 001667 210 DVKVYTVG-PEYAHAEARKSPVV-DGVVMRNPDGKEVR--YPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-G 279 (1034)
Q Consensus 210 DVKvytVG-~~~vhAe~RKSPvv-DG~vrrN~hgke~r--~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~-g 279 (1034)
++.|.++| +.....+.+-.... --.+..+.+.++.. .|..|+++. +++|.++++++|. .+|+||++... |
T Consensus 195 e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g 274 (315)
T TIGR01205 195 ELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEG 274 (315)
T ss_pred EEEEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCC
Confidence 99999999 44333333222100 00123333333333 344677765 7899999999998 59999999885 5
Q ss_pred CeEEEeec-Cceecc
Q 001667 280 RSYVCDVN-GWSFVK 293 (1034)
Q Consensus 280 ~s~V~DVN-GwSFVK 293 (1034)
++||+||| -+.|-.
T Consensus 275 ~~~viEvN~~pg~~~ 289 (315)
T TIGR01205 275 EIYLNEINTIPGMTA 289 (315)
T ss_pred CEEEEEeeCCCCCCC
Confidence 79999999 344433
No 19
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.37 E-value=6.5e-12 Score=136.14 Aligned_cols=232 Identities=16% Similarity=0.216 Sum_probs=147.7
Q ss_pred ChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCch-HHHHHHHHHcCCccc-CCcchhhHHhhH
Q 001667 20 SAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDR 97 (1034)
Q Consensus 20 SkPm~~IL~RL~~~~~feviiFgd~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR 97 (1034)
-+--++|++=|.+.| ++++.++..--+-..+...+.+|+++......|-. ..+-+.++..+...+ ++..+..+.+||
T Consensus 18 l~s~~~i~~al~~~g-~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK 96 (299)
T PRK14571 18 LRSGERVKKALEKLG-YEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDK 96 (299)
T ss_pred HHHHHHHHHHHHHcC-CeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCH
Confidence 344567777777654 66666643211111122234678888875433323 356678888885544 668899999999
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhh
Q 001667 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK 177 (1034)
Q Consensus 98 ~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrk 177 (1034)
....++|+ +|||+|++..+... .. ...+..|+|+||.+|. .|.|+. +
T Consensus 97 ~~~k~~l~-~~ip~p~~~~~~~~------------~~-----~~~l~~P~vvKP~~g~-----------~s~Gv~-~--- 143 (299)
T PRK14571 97 LLTYRFLK-GTVEIPDFVEIKEF------------MK-----TSPLGYPCVVKPRREG-----------SSIGVF-I--- 143 (299)
T ss_pred HHHHHHHh-cCCCCCCEEEEech------------hh-----hhhcCCCEEEecCCCC-----------CcCCEE-E---
Confidence 99999998 58999999888541 00 1124579999999985 344442 1
Q ss_pred hCCCcccccCCcc-ccccccceEEeeccCCCCeeeEEEEECCc---eEEEeeccCCCCCC--eeeecCCCCcee--eeee
Q 001667 178 VGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEVR--YPVL 249 (1034)
Q Consensus 178 ign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVKvytVG~~---~vhAe~RKSPvvDG--~vrrN~hgke~r--~~v~ 249 (1034)
+.|...... -+. ..+....+|+||||+ |.++.|-++|.. .+.+....-| .++ .+..+.++++.. .|..
T Consensus 144 v~~~~el~~-~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~-~~~~~~~~~k~~~g~~~~~~p~~ 219 (299)
T PRK14571 144 CESDEEFQH-ALKEDLPRYGSVIVQEYIP--GREMTVSILETEKGFEVLPILELRP-KRRFYDYVAKYTKGETEFILPAP 219 (299)
T ss_pred ECCHHHHHH-HHHHHHhhCCcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEec-CCCccccccccCCCCeeEEeCCC
Confidence 111111100 000 112345799999996 899999999753 3555543322 122 123334444444 3556
Q ss_pred CCHHH----HHHHHHHHHHhCC-eeeeEeeeeeCCCeEEEeecCc
Q 001667 250 LTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNGW 289 (1034)
Q Consensus 250 Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~g~s~V~DVNGw 289 (1034)
|+++. +++|.++++++|. .+|++|+.-..|++||+|||.-
T Consensus 220 l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~~~~~viEiN~~ 264 (299)
T PRK14571 220 LNPEEERLVKETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINTV 264 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCcEEEEEeeCC
Confidence 88764 4589999999995 7999999888899999999943
No 20
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.32 E-value=9.8e-13 Score=158.64 Aligned_cols=175 Identities=21% Similarity=0.307 Sum_probs=120.3
Q ss_pred cCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEcceecCCCEEEeeccccCcceEEEe
Q 001667 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (1034)
Q Consensus 85 iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i-~v~G~~~~kPfVeKpv~gedHni~IYy 163 (1034)
..+..+-.+..||..+-++|+++|||+|....+.... +....+ .+.| .|+|+||++|.
T Consensus 464 ~tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~---------~a~~~~~~~~g----~PVVVKP~~g~-------- 522 (737)
T TIGR01435 464 KDNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQA---------LALEAFSLFEN----KAIVVKPKSTN-------- 522 (737)
T ss_pred CccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHHhcC----CCEEEeeCCCC--------
Confidence 3444556788999999999999999999998886621 111111 2333 69999999998
Q ss_pred ccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeee------
Q 001667 164 PSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM------ 236 (1034)
Q Consensus 164 p~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vr------ 236 (1034)
+|.|+. +++...+. .++..-+. .++.+..+|+||||+ |+|+||+|+|+++++|..|..|-|-|+=+
T Consensus 523 ---~G~GVs-i~~~~~~~-eel~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eL 595 (737)
T TIGR01435 523 ---YGLGIT-IFKNGFTL-EDFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVREL 595 (737)
T ss_pred ---CcCCeE-EecCcCCH-HHHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHH
Confidence 777773 44433221 12221111 234566899999996 99999999999999999999886655421
Q ss_pred ---ecC---CCCcee-----------------------------------------------eee-eCCHHHHHHHHHHH
Q 001667 237 ---RNP---DGKEVR-----------------------------------------------YPV-LLTPNEKQMAREVC 262 (1034)
Q Consensus 237 ---rN~---hgke~r-----------------------------------------------~~v-~Lt~~Ek~iA~k~~ 262 (1034)
.|. .|++.+ -.+ .+.|+-+++|.+||
T Consensus 596 I~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa 675 (737)
T TIGR01435 596 VAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIA 675 (737)
T ss_pred HHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHH
Confidence 111 122222 222 34567799999999
Q ss_pred HHhCCeeeeEeeeeeC---------CCeEEEeec
Q 001667 263 IAFRQAVCGFDLLRCE---------GRSYVCDVN 287 (1034)
Q Consensus 263 ~afgq~VCGfDLLRs~---------g~s~V~DVN 287 (1034)
+|+|+.||||||+-.. .+--|||||
T Consensus 676 ~algl~i~GVDii~~di~~p~~~~~~~~~iiEvN 709 (737)
T TIGR01435 676 TAVGAAICGVDLIIPDETIPDTDKHAIWGVIEAN 709 (737)
T ss_pred HhcCCCEEEEEEEecCCCCCccccccceEEEEEc
Confidence 9999999999999532 123478998
No 21
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.29 E-value=3.6e-12 Score=130.69 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=85.0
Q ss_pred EEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcccccc--ccceEEeeccCC-CCeeeEEEEECCceEEE
Q 001667 147 FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRR--EGSYIYEEFMPT-GGTDVKVYTVGPEYAHA 223 (1034)
Q Consensus 147 fVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~--~gsyIyEEFi~~-~G~DVKvytVG~~~vhA 223 (1034)
+|+||+.|- .|.|+-++-+.-.|.+++++ ..-. ...++.|+|+++ ..-|.|++++++.++||
T Consensus 34 ~VlKPl~g~-----------gG~gV~~i~~~~~n~~~i~e----~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~a 98 (173)
T PF02955_consen 34 IVLKPLDGM-----------GGRGVFRISRDDPNLNSILE----TLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHA 98 (173)
T ss_dssp EEEEESS-------------TTTT-EEE-TT-TTHHHHHH----HHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SE
T ss_pred EEEEECCCC-----------CCcCEEEEcCCCCCHHHHHH----HHHhcCCccEEEEeccccccCCCEEEEEECCEEhHH
Confidence 999999997 66677544444445555555 3323 345999999999 55599999999999999
Q ss_pred eeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh---CCeeeeEeeeeeCCCeEEEeecCce
Q 001667 224 EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQAVCGFDLLRCEGRSYVCDVNGWS 290 (1034)
Q Consensus 224 e~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~af---gq~VCGfDLLRs~g~s~V~DVNGwS 290 (1034)
..|..+ .|+||.|.+-|+...++.||++|++||.+++..+ |+.-+|+|+| |.|+.|||=.|
T Consensus 99 v~R~P~--~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~Gl~f~GiDvi----g~~l~EiNvts 162 (173)
T PF02955_consen 99 VRRIPA--KGDFRSNLAAGGSAEPAELTEREREICEQIGPKLREDGLLFVGIDVI----GDKLTEINVTS 162 (173)
T ss_dssp EEEE----SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHTT--EEEEEEE----TTEEEEEE-SS
T ss_pred eecCCC--CCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhcCcEEEEEecc----ccceEEEeccC
Confidence 999996 9999999998888899999999999999999887 7889999999 56999999544
No 22
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.25 E-value=7.1e-11 Score=128.67 Aligned_cols=246 Identities=15% Similarity=0.173 Sum_probs=151.5
Q ss_pred eeEEEEeec----CcccCChhHHHHHHHhhccCCeEEEEeCc--ceeecCCCcccCCcCeeec-cccCCCchHHHHHHHH
Q 001667 6 KITIGVCVM----EKKVFSAPMGQILDRLQAFGEFEVIHFGD--KVILEDPIEKWPICDCLIA-FYSSGYPLEKAESYAT 78 (1034)
Q Consensus 6 ~~~iGVCAM----d~Ka~SkPm~~IL~RL~~~~~feviiFgd--~vIL~e~ve~wP~~D~lIs-f~s~gfpl~kai~y~~ 78 (1034)
+++|+|-+= +.-..-+-.++|++-|.+. .++++.++- +-++..-.+. .+|+++. ++|..--.-.+...++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~-g~~~~~~~~~~~~~~~~l~~~--~~d~vf~~lhG~~ge~~~i~~~le 79 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQ-GYDAVGVDASGKELVAKLLEL--KPDKCFVALHGEDGENGRVSALLE 79 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHc-CCEEEEEcCCchhHHHHhhcc--CCCEEEEeCCCCCCCChHHHHHHH
Confidence 445666442 2222335567888888774 478777742 1112111111 3565544 4433222246677888
Q ss_pred HcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCc
Q 001667 79 LRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (1034)
Q Consensus 79 lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedH 157 (1034)
+.+ ||.-++..+..+.+||..+.++|+++|||||++.++.... ..+ ..++.|+|+||.+|.
T Consensus 80 ~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~------------~~~----~~~~~P~vVKP~~gg-- 141 (296)
T PRK14569 80 MLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKL------------VAE----DEISFPVAVKPSSGG-- 141 (296)
T ss_pred HcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchhh------------hhH----hhcCCCEEEEeCCCC--
Confidence 888 6777889999999999999999999999999998775410 001 234579999999975
Q ss_pred ceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeee
Q 001667 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMR 237 (1034)
Q Consensus 158 ni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrr 237 (1034)
.|.|+. ++.|... +..-+........+|+||||+ |.++.|.++|+....+.....+ ++.+..
T Consensus 142 ---------ss~Gv~----~v~~~~e-L~~a~~~~~~~~~~lvEefI~--G~E~tv~vl~~~~~~~~~i~~~--~~~~~~ 203 (296)
T PRK14569 142 ---------SSIATF----KVKSIQE-LKHAYEEASKYGEVMIEQWVT--GKEITVAIVNDEVYSSVWIEPQ--NEFYDY 203 (296)
T ss_pred ---------CCcCeE----EcCCHHH-HHHHHHHHHhcCCEEEEcccc--cEEEEEEEECCcCcceEEEecC--CCcCCh
Confidence 333432 1111111 110000111224689999995 8999999999875444444332 222221
Q ss_pred -cCCCCceee--eeeCCH----HHHHHHHHHHHHhCC-eeeeEeeeee-CCCeEEEeec---Cce
Q 001667 238 -NPDGKEVRY--PVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVN---GWS 290 (1034)
Q Consensus 238 -N~hgke~r~--~v~Lt~----~Ek~iA~k~~~afgq-~VCGfDLLRs-~g~s~V~DVN---GwS 290 (1034)
+.+.+...+ |..+++ +=+++|.++++++|. .+|.||++-. +|.+||+||| |+.
T Consensus 204 ~~k~~~~~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t 268 (296)
T PRK14569 204 ESKYSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMT 268 (296)
T ss_pred hhccCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCC
Confidence 122233333 445553 445689999999995 6999999876 5779999999 753
No 23
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.25 E-value=1.2e-12 Score=153.93 Aligned_cols=84 Identities=38% Similarity=0.659 Sum_probs=76.7
Q ss_pred ccccccccCcccCCCCCCccceeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceEE
Q 001667 837 DKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLR 916 (1034)
Q Consensus 837 ~~E~~~RL~p~ya~V~SP~RhvRTrlYFTsESHIhSLLNvlr~g~l~~~~~~~~~~i~~~A~~~l~~i~ELdYLSqIvf~ 916 (1034)
..|+.++|||.| .||.||||||||||+|||+|||+ ++||| + +.+.||||++|+++|
T Consensus 781 ~~et~~~~~p~~---~sp~~~~r~~lY~~sk~~v~sl~-~~ryG-~-------------------~~~~~ln~~~~t~~~ 836 (1018)
T KOG1057|consen 781 SAETKNRLNPVY---LSPRRHVRTRLYFTSKSHVHSLL-LRRYG-I-------------------SDVEKLNDGLLTSIR 836 (1018)
T ss_pred chhhhcccCccc---cChhHHHHHHHhhhhHhhhhhhh-hhhcC-C-------------------chhhhhcccchhcee
Confidence 568999999999 49999999999999999999999 99999 2 446899999999999
Q ss_pred EEecCCCCCCCCCeeEEEEEecCCCCCC
Q 001667 917 MFENTAVALEDPKRFRIELTFSRGADLS 944 (1034)
Q Consensus 917 lYE~~~~~~~~~~rf~Iei~~SpG~~~~ 944 (1034)
|||....++.+.++||+|++|+.-.|.+
T Consensus 837 L~~~~~~d~~~e~~~~~rlyFtreshi~ 864 (1018)
T KOG1057|consen 837 LYEQILNDPTSERHFHTRLYFTRESHIY 864 (1018)
T ss_pred echhhccCCcccccceeEEEeccchhhh
Confidence 9999999999999999999999877643
No 24
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.23 E-value=7e-11 Score=128.32 Aligned_cols=195 Identities=20% Similarity=0.237 Sum_probs=127.8
Q ss_pred CcCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001667 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 133 (1034)
.+|++|+.+....++ .+.-..++..+ +++.|+.+...+++||....++|+++|||+|++..+.... +..
T Consensus 69 ~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~---------~~~ 139 (326)
T PRK12767 69 KIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLE---------DFK 139 (326)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHH---------HHH
Confidence 357888765433333 23333444445 4678999999999999999999999999999998775511 111
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001667 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1034)
Q Consensus 134 d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1034)
..... ..+..|+|+||.+|. .|.|+. +++ +. .++.. .++....+|.||||.-..-.|-+
T Consensus 140 ~~~~~--~~~~~P~viKP~~g~-----------~s~gv~-~v~---~~-~el~~---~~~~~~~~lvqeyi~G~e~~v~~ 198 (326)
T PRK12767 140 AALAK--GELQFPLFVKPRDGS-----------ASIGVF-KVN---DK-EELEF---LLEYVPNLIIQEFIEGQEYTVDV 198 (326)
T ss_pred hhhhc--ccCCCCEEEEeCCCC-----------CccCeE-EeC---CH-HHHHH---HHHhCCCeEEEeccCCceEEEEE
Confidence 11111 123579999999986 444442 221 11 11110 22223489999999545566667
Q ss_pred EEE-CCceEEEeeccCCCCCCeeeecCCCCc-eeeeeeCCHHHHHHHHHHHHHhCCe-eeeEeeeeeCCCeEEEeecC
Q 001667 214 YTV-GPEYAHAEARKSPVVDGVVMRNPDGKE-VRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNG 288 (1034)
Q Consensus 214 ytV-G~~~vhAe~RKSPvvDG~vrrN~hgke-~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLRs~g~s~V~DVNG 288 (1034)
|+. ++.+++...++-- ...+|. ....+...++=+++|.++++++|.+ +++||+++..|++||+|+|.
T Consensus 199 ~~~~~G~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~g~~~viEiNp 268 (326)
T PRK12767 199 LCDLNGEVISIVPRKRI--------EVRAGETSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINP 268 (326)
T ss_pred EEcCCCCEEEEEEeeee--------eecCCceeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEECCeEEEEEEeC
Confidence 776 6777776665531 112222 2223344677789999999999995 99999999999999999995
No 25
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.20 E-value=9.2e-11 Score=129.78 Aligned_cols=204 Identities=18% Similarity=0.242 Sum_probs=128.9
Q ss_pred CcCeeeccccCCCchH-HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001667 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 133 (1034)
.+|++++-..-.+..+ .+..++++.+ ||+=++..+..+.+||..+.++|.++|||+|++..+.... +..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~---------~~~ 151 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGD---------WEE 151 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccc---------cch
Confidence 6899888754333443 4667888877 6666788999999999999999999999999999887621 000
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeE
Q 001667 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (1034)
Q Consensus 134 d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVK 212 (1034)
..+..-...++.|+|+||.+|. .+.|+. + +.+. .++..-+. ..+.+..+|+|+||+ |.++.
T Consensus 152 ~~~~~~~~~~~~P~vVKP~~~g-----------sS~Gv~-~---v~~~-~el~~a~~~~~~~~~~vlvEefI~--G~E~~ 213 (333)
T PRK01966 152 ASLAEIEAKLGLPVFVKPANLG-----------SSVGIS-K---VKNE-EELAAALDLAFEYDRKVLVEQGIK--GREIE 213 (333)
T ss_pred hhHHHHHHhcCCCEEEEeCCCC-----------CccCEE-E---ECCH-HHHHHHHHHHHhcCCcEEEEcCcC--CEEEE
Confidence 0000000123479999999975 334432 1 1111 11111000 123457899999998 89999
Q ss_pred EEEECCc-eEEEeeccCCCCCCeee--ec-CCC-CceeeeeeCCHHH----HHHHHHHHHHhCC-eeeeEeeeee-CCCe
Q 001667 213 VYTVGPE-YAHAEARKSPVVDGVVM--RN-PDG-KEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRC-EGRS 281 (1034)
Q Consensus 213 vytVG~~-~vhAe~RKSPvvDG~vr--rN-~hg-ke~r~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs-~g~s 281 (1034)
|-++|.+ .+.....--+ -++-+. .. ..| .+...|..|+++. +++|.++++++|. .+|.+|++-. +|.+
T Consensus 214 v~vl~~~~~~~~~~ei~~-~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~ 292 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVK-PDDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEI 292 (333)
T ss_pred EEEECCCCeEcccEEEec-CCceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCE
Confidence 9999852 1111111100 011111 11 122 2344577787754 6889999999997 6899999986 4569
Q ss_pred EEEeec
Q 001667 282 YVCDVN 287 (1034)
Q Consensus 282 ~V~DVN 287 (1034)
||+|||
T Consensus 293 ~vlEiN 298 (333)
T PRK01966 293 YLNEIN 298 (333)
T ss_pred EEEEee
Confidence 999999
No 26
>PRK06849 hypothetical protein; Provisional
Probab=99.19 E-value=1e-10 Score=131.19 Aligned_cols=193 Identities=16% Similarity=0.264 Sum_probs=127.3
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001667 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i 136 (1034)
+|++||-.+..+.+.++.+.++..-.+..++.+....++||...++++++.|||+|++..++... +..+..
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~---------~l~~~~ 147 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDPE---------AIRNFM 147 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHH---------HHHHHh
Confidence 68888887765444444444433445667999999999999999999999999999999987621 111111
Q ss_pred -EEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEE
Q 001667 137 -EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (1034)
Q Consensus 137 -~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvyt 215 (1034)
+.. +.|+|+||+.|. .|.|+.+ +.+. ..+. .+ ....+..+|+||||+-....+-+++
T Consensus 148 ~~~~----~~P~vlKP~~~~-----------~~~~v~~----~~~~-~~l~-~~-~~~~~~~~ivQe~I~G~e~~~~~~~ 205 (389)
T PRK06849 148 FKTP----HTPYVLKPIYSR-----------FVRRVDL----LPKE-AALK-EL-PISKDNPWVMQEFIQGKEYCSYSIV 205 (389)
T ss_pred hcCC----CCcEEEEeCccc-----------CCCeEEE----ecCH-HHhc-cc-ccCCCCCeEEEEEecCCeEEEEEEE
Confidence 111 379999999986 3444431 1121 1111 00 1123456999999996555677788
Q ss_pred ECCceEEEeeccCCCCCCeeeecCCCC-ceeeeeeCCHHHHHHHHHHHHHhCCe-eeeEeeeee-CCCeEEEeec
Q 001667 216 VGPEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVN 287 (1034)
Q Consensus 216 VG~~~vhAe~RKSPvvDG~vrrN~hgk-e~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLRs-~g~s~V~DVN 287 (1034)
.++++++....+. ... ..|+ .+.+.....++=.++|.++++++|.+ +++||++.. +|..||+|+|
T Consensus 206 ~~G~v~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiN 273 (389)
T PRK06849 206 RSGELRAHSCYKP-----EYC--AGSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECN 273 (389)
T ss_pred ECCEEEEEEEeec-----ccc--CCCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEec
Confidence 8887665444221 111 1111 12222234566678999999999988 999999998 7889999999
No 27
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.16 E-value=1.2e-10 Score=129.77 Aligned_cols=187 Identities=13% Similarity=0.171 Sum_probs=121.3
Q ss_pred HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEe
Q 001667 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (1034)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeK 150 (1034)
.+..++++.+ ||+-++..+..+.+||..+.++|+++|||+|++..+.+..- ....++.+..- ..++.|+|+|
T Consensus 105 ~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~------~~~~~~~~~~~-~~l~~PvvVK 177 (347)
T PRK14572 105 RIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKY------LNSPRKTLLKL-ESLGFPQFLK 177 (347)
T ss_pred HHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEcccc------ccChHHHHHHH-HhcCCCEEEe
Confidence 5777888888 56667889999999999999999999999999998876310 00011111100 1245799999
Q ss_pred ecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECC----ce---EE
Q 001667 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP----EY---AH 222 (1034)
Q Consensus 151 pv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~----~~---vh 222 (1034)
|.+|. ..+|++..... -....++.. +..+..+|+||||+ |+++.|-++|. +. +-
T Consensus 178 P~~ggsS~GV~~v~~~~---el~~a~~~~-------------~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~l 239 (347)
T PRK14572 178 PVEGGSSVSTYKITNAE---QLMTLLALI-------------FESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIAL 239 (347)
T ss_pred cCCCCCCCCEEEECCHH---HHHHHHHHH-------------HhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCceec
Confidence 99974 33333322211 111111111 12355789999995 89999999973 21 11
Q ss_pred --EeeccCCCCCCe---eeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhCCe-eeeEeeeeeCCCeEEEeec
Q 001667 223 --AEARKSPVVDGV---VMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVN 287 (1034)
Q Consensus 223 --Ae~RKSPvvDG~---vrrN~hgke~--r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs~g~s~V~DVN 287 (1034)
.|-+ | .|. ++...+.++. ..|..|+++ =+++|.++++++|.. ++++|++-..|++||+|||
T Consensus 240 ~~~ei~--~--~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~~~~vlEiN 312 (347)
T PRK14572 240 PATEIV--P--GGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETN 312 (347)
T ss_pred ccEEEe--c--CCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEECCcEEEEeee
Confidence 1222 1 222 2222222222 346667765 378999999999976 9999999888999999999
No 28
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.15 E-value=2.1e-10 Score=127.59 Aligned_cols=210 Identities=19% Similarity=0.252 Sum_probs=131.9
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHH-HhCCCCCCcEEEEeccCCCcccccccccCCe
Q 001667 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL-~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~ 135 (1034)
+|++++-+.. .+. .+++.++..+.++.++..+..+.+||....++| +++|||+|++..++... +....
T Consensus 63 id~v~~~~e~-v~~-~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~---------~~~~~ 131 (380)
T TIGR01142 63 PDYIVPEIEA-IAT-DALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLD---------ELREA 131 (380)
T ss_pred CCEEEeccCc-cCH-HHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHH---------HHHHH
Confidence 7887765543 333 345677888877788999999999999999975 89999999999886621 11111
Q ss_pred EEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc-cccccccceEEeeccCCCCeeeEEE
Q 001667 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV-RRVRREGSYIYEEFMPTGGTDVKVY 214 (1034)
Q Consensus 136 i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~-~~~r~~gsyIyEEFi~~~G~DVKvy 214 (1034)
+. .++.|+|+||++|. .|.|+. +.+....-...++--. .....++.+|+||||+ .+..+-|.
T Consensus 132 ~~----~~g~P~VvKP~~g~-----------~s~gv~-~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~ 194 (380)
T TIGR01142 132 VE----KIGYPCVVKPVMSS-----------SGKGQS-VVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID-FDYEITLL 194 (380)
T ss_pred HH----HcCCCEEEEECCCc-----------CCCCeE-EECCHHHHHHHHHHHHhhccCCCCCEEEEEecC-CCEEEEEE
Confidence 11 23469999999986 334432 2221110000111000 0001245799999996 35677777
Q ss_pred EE---CCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhCC-eeeeEeeeeeCCCeEEEee
Q 001667 215 TV---GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDV 286 (1034)
Q Consensus 215 tV---G~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~g~s~V~DV 286 (1034)
++ +++.+.. .| .+.+..+..-.+...|..|+++. +++|.++++++|. -++++|++-+++++||+||
T Consensus 195 ~~~~~~g~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~~~viEi 268 (380)
T TIGR01142 195 TVRHVDGNTTFC----AP--IGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDEVIFSEV 268 (380)
T ss_pred EEEcCCCCEEEe----cC--cceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCcEEEEEe
Confidence 76 3332221 12 22332222222344677788764 4678899999997 6789999999999999999
Q ss_pred c----C---ceecccchhhHH
Q 001667 287 N----G---WSFVKNSYKYYD 300 (1034)
Q Consensus 287 N----G---wSFVK~n~kYYD 300 (1034)
| | |..+..+..+|+
T Consensus 269 npR~~~~~~~~~~~~g~~~~~ 289 (380)
T TIGR01142 269 SPRPHDTGMVTLISQGLSEFA 289 (380)
T ss_pred ecCCCCCceEEeeecCCCHHH
Confidence 9 2 445555666664
No 29
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=99.15 E-value=3.5e-10 Score=118.56 Aligned_cols=49 Identities=43% Similarity=0.512 Sum_probs=39.6
Q ss_pred HHHHHHhc--cCCCCcchhhhhhcccccceEeecCCchHHHHHHHHHhhhcccCC
Q 001667 495 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (1034)
Q Consensus 495 e~LG~~fR--Yp~~~~GLLrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (1034)
.++|+.+| |+. ++.+......++.|+||+..||+.||++|+.||+.-.+
T Consensus 28 ~~~G~~lr~~y~~----~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~ 78 (242)
T cd07061 28 FELGRYFRQRYGE----LLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDG 78 (242)
T ss_pred HHHHHHHHHHHHH----hcccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCcc
Confidence 46888888 753 33334556789999999999999999999999998664
No 30
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.11 E-value=1.4e-09 Score=120.86 Aligned_cols=198 Identities=16% Similarity=0.261 Sum_probs=131.9
Q ss_pred CcCeeeccccCCCchH-HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001667 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 133 (1034)
.+|++++-..-++-.+ .+..++++.+ ||.-++..+..+.+||..+.++|+++|||+|++..+.+..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~------------ 157 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADE------------ 157 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCc------------
Confidence 4788877654445553 6788899888 6777899999999999999999999999999999887621
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeE
Q 001667 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (1034)
Q Consensus 134 d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVK 212 (1034)
+ +. -..+..|+|+||.+|- .+.|+. + +.|.. ++..-+. ..+-+..+|+||||+ |.++-
T Consensus 158 ~-~~--~~~l~~P~iVKP~~~g-----------sS~Gv~-~---v~~~~-eL~~a~~~a~~~~~~vlVEe~I~--G~E~s 216 (343)
T PRK14568 158 R-PD--AATLTYPVFVKPARSG-----------SSFGVS-K---VNSAD-ELDYAIESARQYDSKVLIEEAVV--GSEVG 216 (343)
T ss_pred h-hh--hhhcCCCEEEEeCCCC-----------CCCCEE-E---eCCHH-HHHHHHHHHHhcCCcEEEECCcC--CEEEE
Confidence 0 11 1235579999999975 233332 1 11111 1111000 122356789999997 88999
Q ss_pred EEEECCc---eEEEeeccCCCCCCeeeec----CC----CCceeeeeeCCHHH----HHHHHHHHHHhCC-eeeeEeeee
Q 001667 213 VYTVGPE---YAHAEARKSPVVDGVVMRN----PD----GKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLR 276 (1034)
Q Consensus 213 vytVG~~---~vhAe~RKSPvvDG~vrrN----~h----gke~r~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLR 276 (1034)
|-++|.. .+....+..+ ..|.++.. .+ ......|..|+++. +++|.++++++|. .+|.+|++-
T Consensus 217 v~vl~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l 295 (343)
T PRK14568 217 CAVLGNGADLVVGEVDQIRL-SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFL 295 (343)
T ss_pred EEEEcCCCCcceecceEEec-CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 8888753 2222222222 13333311 11 11235677788753 5789999999999 699999987
Q ss_pred e-CCCeEEEeec
Q 001667 277 C-EGRSYVCDVN 287 (1034)
Q Consensus 277 s-~g~s~V~DVN 287 (1034)
. +|.+||+|||
T Consensus 296 ~~~g~~~llEIN 307 (343)
T PRK14568 296 QEDGTVVLNEVN 307 (343)
T ss_pred eCCCCEEEEEee
Confidence 6 5779999999
No 31
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.08 E-value=1.3e-09 Score=122.99 Aligned_cols=203 Identities=13% Similarity=0.180 Sum_probs=128.2
Q ss_pred CcCeeeccccCCCchH-HHHHHHHHcCCcccCCc-chhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001667 56 ICDCLIAFYSSGYPLE-KAESYATLRKPFLVNEL-EPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p~~iNdl-~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 133 (1034)
.+|++++...-.+-.+ .+..++++.+...++.- .+..+.+||..+.++|+++|||||.+..+.+... ..+.+
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~------~~~~~ 160 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDY------FLDKE 160 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccc------ccchH
Confidence 4787777654334443 78899999996666655 6999999999999999999999999887765210 00111
Q ss_pred CeEE-EcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeee
Q 001667 134 DFVE-VHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (1034)
Q Consensus 134 d~i~-v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DV 211 (1034)
+... +. ..++.|+|+||..+- ..+|.+-.... .|-+.+ + ..++-+..+|+||||. |.++
T Consensus 161 ~~~~~~~-~~lg~PviVKP~~~GsS~Gv~~v~~~~------el~~al-------~---~a~~~~~~vlVEefI~--GrEi 221 (364)
T PRK14570 161 GIKKDIK-EVLGYPVIVKPAVLGSSIGINVAYNEN------QIEKCI-------E---EAFKYDLTVVIEKFIE--AREI 221 (364)
T ss_pred HHHHHHH-HhcCCCEEEEeCCCCCCCcEEEeCCHH------HHHHHH-------H---HHHhCCCCEEEECCcC--CEEE
Confidence 1111 10 124579999999964 23333221111 111111 1 0123356689999997 8999
Q ss_pred EEEEECCceEEEeeccCCCC-----CCeee-----ecCC-CCce--eeeeeCCH----HHHHHHHHHHHHhCC-eeeeEe
Q 001667 212 KVYTVGPEYAHAEARKSPVV-----DGVVM-----RNPD-GKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFD 273 (1034)
Q Consensus 212 KvytVG~~~vhAe~RKSPvv-----DG~vr-----rN~h-gke~--r~~v~Lt~----~Ek~iA~k~~~afgq-~VCGfD 273 (1034)
.|-++|..... -+|+. ++.|- ...+ |+.. ..|..|++ +-+++|.++++++|. .+|.+|
T Consensus 222 ~v~Vlg~~~~~----v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvD 297 (364)
T PRK14570 222 ECSVIGNEQIK----IFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARID 297 (364)
T ss_pred EEEEECCCCce----EeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 99999975321 12211 11111 1111 3322 23556765 567889999999999 588999
Q ss_pred eeee--CCCeEEEeec
Q 001667 274 LLRC--EGRSYVCDVN 287 (1034)
Q Consensus 274 LLRs--~g~s~V~DVN 287 (1034)
++=. +|.+||+|||
T Consensus 298 f~l~~~~g~~yvlEiN 313 (364)
T PRK14570 298 FLIEKDTGLIYLNEIN 313 (364)
T ss_pred EEEECCCCcEEEEEee
Confidence 9776 3779999999
No 32
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.00 E-value=1.3e-09 Score=122.94 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=123.0
Q ss_pred CCch-HHHHHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecC
Q 001667 67 GYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 144 (1034)
Q Consensus 67 gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~ 144 (1034)
..|| .....+++..+. +.-.+..+-.+.+||....++|+++|||+|++..+.... +..+.+. .++
T Consensus 36 E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~---------ea~~~~~----~~g 102 (379)
T PRK13790 36 EQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKK---------DALTYIE----NCE 102 (379)
T ss_pred cHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCHH---------HHHHHHH----hcC
Confidence 3455 456678888884 444666888899999999999999999999998776510 1222222 134
Q ss_pred CCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEE--
Q 001667 145 KPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAH-- 222 (1034)
Q Consensus 145 kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vh-- 222 (1034)
.|+|+||..|. .|.|+. +.+......+.+.- +.....++.+|+||||.-.--.|-+++-|..++.
T Consensus 103 ~PvVvKp~~~~-----------~gkGV~-iv~~~~el~~a~~~-~~~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~ 169 (379)
T PRK13790 103 LPVVVKKDGLA-----------AGKGVI-IADTIEAARSAIEI-MYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFD 169 (379)
T ss_pred CCEEEEeCCCC-----------CCCCEE-EECCHHHHHHHHHH-HHhcCCCCeEEEEEcccCceEEEEEEeeCCEEEecc
Confidence 69999999875 334442 21111111111110 0001224579999999766678888887765432
Q ss_pred EeeccC-CCCCCeeeecCCCCceeeee-eCCHHH-----HHHHHHHHHHh---CCeeee---EeeeeeCCCeEEEeecC
Q 001667 223 AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 288 (1034)
Q Consensus 223 Ae~RKS-PvvDG~vrrN~hgke~r~~v-~Lt~~E-----k~iA~k~~~af---gq~VCG---fDLLRs~g~s~V~DVNG 288 (1034)
+..++. ...+|+..-|+.|-+.-.|+ .++++. ++||.++++++ |...+| +|++-+.+++||+|||.
T Consensus 170 ~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g~~viEiN~ 248 (379)
T PRK13790 170 CIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNA 248 (379)
T ss_pred cccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEEc
Confidence 222222 12466555565443333344 467653 67899999998 545455 59988888999999996
No 33
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.91 E-value=4.2e-09 Score=117.82 Aligned_cols=197 Identities=19% Similarity=0.242 Sum_probs=120.5
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHH-hCCCCCCcEEEEeccCCCcccccccccCC
Q 001667 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLE-KYGIPVPRYALVNREVPYQELDYFIEEED 134 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~-~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 134 (1034)
.+|++|+.... .+. .+++.++..+..+..+..+-.+.+||....++|. ++|||+|++..++... +...
T Consensus 75 ~id~vi~~~e~-~~~-~~~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~---------~l~~ 143 (395)
T PRK09288 75 KPDYIVPEIEA-IAT-DALVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLE---------ELRA 143 (395)
T ss_pred CCCEEEEeeCc-CCH-HHHHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHH---------HHHH
Confidence 38889886654 333 3345566667666688889999999999999885 7899999999887621 1111
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccc-cccceEEeeccCCCCeeeE
Q 001667 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVK 212 (1034)
Q Consensus 135 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r-~~gsyIyEEFi~~~G~DVK 212 (1034)
.+. .++.|+|+||..|. -.++++..... -....++..-. ..| ....+|+||||+ .|..+-
T Consensus 144 ~~~----~~g~P~VvKP~~g~~s~Gv~~v~~~~---el~~~~~~~~~----------~~~~~~~~~lvEefi~-~~~E~s 205 (395)
T PRK09288 144 AVE----EIGYPCVVKPVMSSSGKGQSVVRSPE---DIEKAWEYAQE----------GGRGGAGRVIVEEFID-FDYEIT 205 (395)
T ss_pred HHH----hcCCCEEEEeCCCcCCCCeEEECCHH---HHHHHHHHHHh----------hccccCCCEEEEEecC-CCEEEE
Confidence 111 23469999999885 12222222111 11112221100 001 136799999996 456677
Q ss_pred EEEECC---ceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCC-eeeeEeeeeeCCCeEEE
Q 001667 213 VYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 284 (1034)
Q Consensus 213 vytVG~---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek----~iA~k~~~afgq-~VCGfDLLRs~g~s~V~ 284 (1034)
|.++.. ...... | . +.++.+-+-.+.-.|..|+++.. ++|.++++++|. -++.+|+.-+++++||+
T Consensus 206 v~~~~~~~~~~~~~~----~-~-~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~~~vi 279 (395)
T PRK09288 206 LLTVRAVDGGTHFCA----P-I-GHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFS 279 (395)
T ss_pred EEEEEcCCCCEEEec----C-c-ccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCeEEEE
Confidence 766532 222221 1 1 22222211122345777887654 488999999984 45678999888899999
Q ss_pred eec
Q 001667 285 DVN 287 (1034)
Q Consensus 285 DVN 287 (1034)
|+|
T Consensus 280 Ein 282 (395)
T PRK09288 280 EVS 282 (395)
T ss_pred Eec
Confidence 999
No 34
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.91 E-value=1.1e-09 Score=107.89 Aligned_cols=161 Identities=23% Similarity=0.327 Sum_probs=94.7
Q ss_pred HHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEEeccCCCChH
Q 001667 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGM 171 (1034)
Q Consensus 93 ~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~ 171 (1034)
++.||....+++.+.|||+|++..+.... +..+.+. ++ .|+|+||..|. .|.|+
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~---------~~~~~~~~~~-----~p~vvKp~~g~-----------gs~gv 55 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE---------ELRAFAEDLG-----FPFVVKPVDGS-----------GSRGV 55 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH---------HHHHHHHHSS-----SSEEEEESS-S-----------TTTT-
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHHcC-----CCEEEEcCccc-----------cCCCE
Confidence 36789999999999999999999987731 1222222 22 59999999996 34444
Q ss_pred HHHHhhhCCCcccccCCcccc-----ccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCC---Cc
Q 001667 172 KELFRKVGNRSSEFHPDVRRV-----RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG---KE 243 (1034)
Q Consensus 172 ~~Lfrkign~sS~~~p~~~~~-----r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hg---ke 243 (1034)
. +++.. + ++..-+..+ ..+..||.||||+...-.+.+++.+++++.+...+.- .....+. ..
T Consensus 56 ~-~~~~~---~-~l~~~~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~ 125 (184)
T PF13535_consen 56 F-IVHSP---E-ELEAALAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYV-----RQSPGHFSGGVP 125 (184)
T ss_dssp E-EESSH---H-HHHHHHHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEE-----EEETCCCSSSEE
T ss_pred E-EeCCH---H-HHHHHHHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEe-----ccccccccccee
Confidence 2 22111 1 111000011 2357899999999655777888888887555544331 1112222 23
Q ss_pred eeeeeeCC----HHHHHHHHHHHHHhCC--eeeeEeeeeeCCC-eEEEeecC
Q 001667 244 VRYPVLLT----PNEKQMAREVCIAFRQ--AVCGFDLLRCEGR-SYVCDVNG 288 (1034)
Q Consensus 244 ~r~~v~Lt----~~Ek~iA~k~~~afgq--~VCGfDLLRs~g~-s~V~DVNG 288 (1034)
..+....+ ++=++.+.++++++|. -++++|+++..+| .|++|||.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 126 TGYSVPSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINP 177 (184)
T ss_dssp EEEEES--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEES
T ss_pred eeeecccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECc
Confidence 33443222 5667788999999997 9999999999877 69999994
No 35
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.90 E-value=6e-09 Score=115.66 Aligned_cols=191 Identities=19% Similarity=0.273 Sum_probs=117.8
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001667 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i 136 (1034)
||++ ++-....|. .++++++..+..+.++..+..+.+||....++|+++|||+|++..+.... +....+
T Consensus 61 ~dvi-t~e~e~i~~-~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~---------~~~~~~ 129 (352)
T TIGR01161 61 CDVI-TFEFEHVDV-EALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEE---------ELDAAL 129 (352)
T ss_pred CCEE-EeCcCcCCH-HHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHH---------HHHHHH
Confidence 5654 433333443 45677777766677999999999999999999999999999999987621 111222
Q ss_pred EEcceecCCCEEEeecccc--CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEE
Q 001667 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (1034)
Q Consensus 137 ~v~G~~~~kPfVeKpv~ge--dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvy 214 (1034)
. .++.|+|+||..|. -.++++..... -....++. . .+..+|.||||+ .|..+-|.
T Consensus 130 ~----~~g~P~vvKp~~~g~~g~Gv~~v~~~~---el~~a~~~--------------~-~~~~~lvEe~I~-~~~E~sv~ 186 (352)
T TIGR01161 130 Q----ELGFPVVLKARTGGYDGRGQYRIRNEA---DLPQAAKE--------------L-GDRECIVEEFVP-FERELSVI 186 (352)
T ss_pred H----HcCCCEEEEeCCCCCCCCCEEEECCHH---HHHHHHHh--------------c-CCCcEEEEecCC-CCeEEEEE
Confidence 1 12369999999863 22333222111 01111111 1 134799999996 35667666
Q ss_pred EEC---CceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCCe-eeeEeeeeeCCC-eEEEe
Q 001667 215 TVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCD 285 (1034)
Q Consensus 215 tVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs~g~-s~V~D 285 (1034)
++. +++.. -|+..- +.++-.......|..++++ =+++|.+++++||.. ++++|+..+.+| +||+|
T Consensus 187 ~~~~~~G~~~~-----~~~~~~-~~~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~E 260 (352)
T TIGR01161 187 VARSADGETAF-----YPVVEN-IHQDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINE 260 (352)
T ss_pred EEEcCCCCEEE-----ECCccc-EEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEE
Confidence 552 23221 232221 1121111112235556643 367899999999985 899999988655 99999
Q ss_pred ec
Q 001667 286 VN 287 (1034)
Q Consensus 286 VN 287 (1034)
||
T Consensus 261 in 262 (352)
T TIGR01161 261 LA 262 (352)
T ss_pred ec
Confidence 99
No 36
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.89 E-value=7.8e-09 Score=114.66 Aligned_cols=257 Identities=23% Similarity=0.388 Sum_probs=150.8
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCch-HHHHHHHHHcC-
Q 001667 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRK- 81 (1034)
Q Consensus 4 ~~~~~iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiFgd~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~- 81 (1034)
.+..+||.|--.+|.+|==-+ -|--+.+...+++|--. ++.|+++=--.||+|-=..+. .. ....+|.+..-
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~-~~~~~~~~~gi~~v~id----~~~pl~~QgpfDvIlHKltd~-~~~~~l~~y~~~hP~ 78 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQP-SFIDLARSRGIDFVPID----LSKPLEEQGPFDVILHKLTDE-DWVQQLEEYIKKHPE 78 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCC-HHCCCCCCCTTEEEEEE----CCSSSGCC--SCEEEE--CHC-HHHHHHHHHHHH-TT
T ss_pred ccceEEEEEECHHHHHHhhHH-HHHHHHHhcCCEEEEcC----CCCCcccCCCcEEEEEeCCCH-HHHHHHHHHHHHCCC
Confidence 467899988777776543222 22234444557766433 466666554589999877763 33 56667777632
Q ss_pred CcccCCcchhhHHhhHHHHHHHHHhC-------CCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccc
Q 001667 82 PFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 154 (1034)
Q Consensus 82 p~~iNdl~~q~~l~DR~~vlqiL~~~-------gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~g 154 (1034)
..+|..++++..|.||...|++|++. +|.+|+.+++..+. . +..+.+.-.| +.-|+|.||+-+
T Consensus 79 v~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-~-------~~~~~l~~ag--L~fPlI~KPlvA 148 (307)
T PF05770_consen 79 VVVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDA-E-------SLPELLKEAG--LKFPLICKPLVA 148 (307)
T ss_dssp SEEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSH-C-------CHHHHHHCTT--S-SSEEEEESB-
T ss_pred eEEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCH-H-------HHHHHHHHCC--CcccEEeeehhh
Confidence 35788889999999998888888764 78999999998642 1 1112222344 578999999984
Q ss_pred ----cCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccC-C
Q 001667 155 ----DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS-P 229 (1034)
Q Consensus 155 ----edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKS-P 229 (1034)
+-|...|-|... |-.. + +...+.||||.-+|.=-||||||..+.. ..|+| |
T Consensus 149 ~Gsa~SH~Maivf~~~---gL~~-----------L---------~~P~VlQeFVNHggvLfKVyVvGd~v~~-v~R~SLp 204 (307)
T PF05770_consen 149 CGSADSHKMAIVFNEE---GLKD-----------L---------KPPCVLQEFVNHGGVLFKVYVVGDKVFV-VKRPSLP 204 (307)
T ss_dssp SSTSCCCEEEEE-SGG---GGTT----------------------SSEEEEE----TTEEEEEEEETTEEEE-EEEE---
T ss_pred cCCccceEEEEEECHH---HHhh-----------c---------CCCEEEEEeecCCCEEEEEEEecCEEEE-EECCCCC
Confidence 568888888643 3321 1 2345999999999999999999977555 66666 2
Q ss_pred CC-CCe-------ee----ecCCCCce-------eeeeeCCHHH--HHHHHHHHHHhCCeeeeEeeeeeCC---CeEEEe
Q 001667 230 VV-DGV-------VM----RNPDGKEV-------RYPVLLTPNE--KQMAREVCIAFRQAVCGFDLLRCEG---RSYVCD 285 (1034)
Q Consensus 230 vv-DG~-------vr----rN~hgke~-------r~~v~Lt~~E--k~iA~k~~~afgq~VCGfDLLRs~g---~s~V~D 285 (1034)
=+ .|+ |. ++.+-... -..+.+.+++ +.+|..+-+++|++..|||++|.++ .-||+|
T Consensus 205 n~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VID 284 (307)
T PF05770_consen 205 NVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVID 284 (307)
T ss_dssp ---SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEE
T ss_pred CCCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEE
Confidence 11 111 11 11110000 0112222222 6799999999999999999999864 499999
Q ss_pred ecCceecccchhhHH
Q 001667 286 VNGWSFVKNSYKYYD 300 (1034)
Q Consensus 286 VNGwSFVK~n~kYYD 300 (1034)
||=|==-|+-..|+.
T Consensus 285 INyFPgY~~vp~f~~ 299 (307)
T PF05770_consen 285 INYFPGYKKVPDFES 299 (307)
T ss_dssp EEES--TTTSCTHHH
T ss_pred eccCCCccCCCChHH
Confidence 996544466667773
No 37
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.86 E-value=6.7e-09 Score=117.97 Aligned_cols=207 Identities=15% Similarity=0.165 Sum_probs=123.0
Q ss_pred cCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001667 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 134 (1034)
+|++|+ +...|+ ......++..+ |+.-++..+-.+.+||....++|+++|||+|++..++.. . +..+
T Consensus 63 id~vi~--~~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~--~-------~~~~ 131 (420)
T PRK00885 63 IDLTVV--GPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDA--E-------EALA 131 (420)
T ss_pred CCEEEE--CCchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH--H-------HHHH
Confidence 466664 334555 23445667677 555577778889999999999999999999999887551 0 1122
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001667 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1034)
Q Consensus 135 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1034)
.+. .++.|+|+||..|. -.++++..... -....++.+-+. +.+. +....+|+||||+-.--.|-+
T Consensus 132 ~~~----~~~~P~VvKP~~~~gs~Gv~~v~~~~---el~~~~~~~~~~-~~~~------~~~~~vlvEe~i~G~E~sv~~ 197 (420)
T PRK00885 132 YLD----EKGAPIVVKADGLAAGKGVVVAMTLE---EAKAAVDDMLAG-NKFG------DAGARVVIEEFLDGEEASFFA 197 (420)
T ss_pred HHH----HcCCCEEEEeCCCCCCCcEEEeCCHH---HHHHHHHHHhhc-cccc------CCCCeEEEEEccCCcEEEEEE
Confidence 221 12369999999875 12222222111 011122221110 0010 134679999999743344445
Q ss_pred EEECCceEE-Eeecc-CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhC---C---eeeeEeeeeeCC
Q 001667 214 YTVGPEYAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR---Q---AVCGFDLLRCEG 279 (1034)
Q Consensus 214 ytVG~~~vh-Ae~RK-SPvvDG~vrrN~hgke~r~~v~-Lt~~Ek-----~iA~k~~~afg---q---~VCGfDLLRs~g 279 (1034)
++-|..+.. ..+|. -...+|...-|+.|-+.-.|.. |+++.. .|+.++.++++ . -++.+|+.-+.+
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~ 277 (420)
T PRK00885 198 FVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKD 277 (420)
T ss_pred EECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECC
Confidence 554444332 22221 1124666656666666666764 777533 36667777654 3 567899999999
Q ss_pred CeEEEeecC
Q 001667 280 RSYVCDVNG 288 (1034)
Q Consensus 280 ~s~V~DVNG 288 (1034)
++||+|+|.
T Consensus 278 g~~viEin~ 286 (420)
T PRK00885 278 GPKVIEFNA 286 (420)
T ss_pred CcEEEEEec
Confidence 999999993
No 38
>PRK07206 hypothetical protein; Provisional
Probab=98.77 E-value=7.6e-08 Score=108.69 Aligned_cols=207 Identities=14% Similarity=0.178 Sum_probs=120.9
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001667 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i 136 (1034)
+|++|+..-.+.++ |-+-.+..++...|+...-...+||....+.|.++|||+|++..+.... +..+.+
T Consensus 71 ~d~vi~~~e~~~~~--~a~l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~---------e~~~~~ 139 (416)
T PRK07206 71 PEAIIAGAESGVEL--ADRLAEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADWE---------EAEAWL 139 (416)
T ss_pred CCEEEECCCccHHH--HHHHHHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHH---------HHHHHH
Confidence 68999865444443 2222344555557888888899999999999999999999999876511 122222
Q ss_pred EEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEE
Q 001667 137 EVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (1034)
Q Consensus 137 ~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvyt 215 (1034)
.-.|- +..|+|+||++|. -.+|++..... -.+..++..-+..+.+. ..+..+|.||||+-.--.|-+++
T Consensus 140 ~~~g~-~~~P~VvKP~~g~gs~gv~~v~~~~---el~~~~~~~~~~~~~~~------~~~~~~lvEe~i~G~E~sv~~~~ 209 (416)
T PRK07206 140 RENGL-IDRPVVIKPLESAGSDGVFICPAKG---DWKHAFNAILGKANKLG------LVNETVLVQEYLIGTEYVVNFVS 209 (416)
T ss_pred HhcCC-CCCCEEEeCCCCCCCCCEEEeCCHH---HHHHHHHHHHhccccCC------CCCCeEEEEEccccEEEEEEEEE
Confidence 11110 1349999999984 23344333221 12223333321111111 12468999999975334555676
Q ss_pred ECCceEE-Eeec--cCCCCCCeeeecCCCCceeeee--eCCHHHHHHHHHHHHHhCC--eeeeEeeeeeCCCeEEEeec
Q 001667 216 VGPEYAH-AEAR--KSPVVDGVVMRNPDGKEVRYPV--LLTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGRSYVCDVN 287 (1034)
Q Consensus 216 VG~~~vh-Ae~R--KSPvvDG~vrrN~hgke~r~~v--~Lt~~Ek~iA~k~~~afgq--~VCGfDLLRs~g~s~V~DVN 287 (1034)
.+++... +..+ +.+..+|.+.... .. ..|. ...++=.++|.++++++|. -++.+|+..+.+|++|+|||
T Consensus 210 ~~G~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEin 285 (416)
T PRK07206 210 LDGNHLVTEIVRYHKTSLNSGSTVYDY--DE-FLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIG 285 (416)
T ss_pred ECCEEEEEEeEEeeecccCCCCceecc--cc-cCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEEC
Confidence 6666433 2232 2222233221110 00 0111 1112234568899999998 47889999999999999999
No 39
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.75 E-value=1.7e-08 Score=127.33 Aligned_cols=198 Identities=17% Similarity=0.263 Sum_probs=129.1
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001667 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 134 (1034)
..|.+|+.+|.-.|+ .....++..+ |+.-|+..+..+++||.+..++|+++|||+|++..+.... +..+
T Consensus 629 ~~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~e---------e~~~ 698 (1066)
T PRK05294 629 KPKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVE---------EALE 698 (1066)
T ss_pred CCCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHH---------HHHH
Confidence 368899988877666 4556677777 4556888999999999999999999999999999886510 1112
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCC-CeeeE
Q 001667 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVK 212 (1034)
Q Consensus 135 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~-G~DVK 212 (1034)
.+. .++.|+|+||..|. -.+++|.+... -....++..- ....+..+|.||||+-. .-+|-
T Consensus 699 ~~~----~igyPvvVKP~~~~Gg~Gv~iv~~~e---eL~~~~~~a~-----------~~s~~~~vlIEefI~G~~E~sV~ 760 (1066)
T PRK05294 699 VAE----EIGYPVLVRPSYVLGGRAMEIVYDEE---ELERYMREAV-----------KVSPDHPVLIDKFLEGAIEVDVD 760 (1066)
T ss_pred HHH----hcCCCeEEEeCCCCCCCcEEEECCHH---HHHHHHHHHH-----------hhCCCCcEEEEecCCCCEEEEEE
Confidence 222 23469999998875 12222222111 0111111100 01235679999999764 67888
Q ss_pred EEEECCce-EEE-eeccCCCCCCeeeecCCCCceee---eeeCCHHH----HHHHHHHHHHhCC-eeeeEeeeeeCCCeE
Q 001667 213 VYTVGPEY-AHA-EARKSPVVDGVVMRNPDGKEVRY---PVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSY 282 (1034)
Q Consensus 213 vytVG~~~-vhA-e~RKSPvvDG~vrrN~hgke~r~---~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~g~s~ 282 (1034)
++.-|..+ +.+ +.+..+ ...|.|+... +..|++++ +++|.++++++|. -++++|++..++++|
T Consensus 761 ~v~dg~~v~i~~i~e~i~~-------~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~~y 833 (1066)
T PRK05294 761 AICDGEDVLIGGIMEHIEE-------AGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVY 833 (1066)
T ss_pred EEecCCeEEEeeeEEeeee-------ccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCeEE
Confidence 88766532 222 222221 2345454433 35677643 4578888999998 456699999999999
Q ss_pred EEeecC
Q 001667 283 VCDVNG 288 (1034)
Q Consensus 283 V~DVNG 288 (1034)
|+|||.
T Consensus 834 ViEiNp 839 (1066)
T PRK05294 834 VIEVNP 839 (1066)
T ss_pred EEEEec
Confidence 999994
No 40
>PRK05586 biotin carboxylase; Validated
Probab=98.72 E-value=2.8e-08 Score=114.20 Aligned_cols=202 Identities=18% Similarity=0.272 Sum_probs=118.7
Q ss_pred CCcCeeeccccCCCchH-HHHH-HHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEE--EeccCCCcccccc
Q 001667 55 PICDCLIAFYSSGYPLE-KAES-YATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYF 129 (1034)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~-y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~--~~r~~p~~~~~~~ 129 (1034)
..||+++|-| ||-.+ ..++ -++..+ ||+..+..+..+++||....++|+++|||+|++.. +..
T Consensus 73 ~~~d~i~p~~--~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~---------- 140 (447)
T PRK05586 73 TGAQAIHPGF--GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIEN---------- 140 (447)
T ss_pred cCCCEEEcCc--cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCC----------
Confidence 5799999865 33221 2333 344455 57889999999999999999999999999998743 222
Q ss_pred cccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCC
Q 001667 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (1034)
Q Consensus 130 ~e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G 208 (1034)
.+|....- ..++.|+|+||++|. -.++++..... -....|+...+.+- . .+ .++.+|.||||. ++
T Consensus 141 --~~e~~~~~-~~igyPvvvKP~~gggg~Gv~~v~~~~---el~~a~~~~~~~~~---~---~~-~~~~vivEe~i~-g~ 206 (447)
T PRK05586 141 --EEEALEIA-KEIGYPVMVKASAGGGGRGIRIVRSEE---ELIKAFNTAKSEAK---A---AF-GDDSMYIEKFIE-NP 206 (447)
T ss_pred --HHHHHHHH-HHcCCCEEEEECCCCCCCeeEEECCHH---HHHHHHHHHHHHHH---H---hc-CCCeEEEEecCC-CC
Confidence 11111100 123479999999986 12222222111 11122222111000 0 01 146799999996 34
Q ss_pred eeeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCceee-e-eeCCHHH----HHHHHHHHHHhCCeeee-Eeeeee-
Q 001667 209 TDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRY-P-VLLTPNE----KQMAREVCIAFRQAVCG-FDLLRC- 277 (1034)
Q Consensus 209 ~DVKvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~-~-v~Lt~~E----k~iA~k~~~afgq~VCG-fDLLRs- 277 (1034)
..+-+.+++ +++++.-.|... ..+++ ++-+.. | ..|+++. +++|.++++++|..-++ +|++-.
T Consensus 207 ~ei~v~v~~d~~G~~~~~~~~~~~----~~~~~--~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~ 280 (447)
T PRK05586 207 KHIEFQILGDNYGNVVHLGERDCS----LQRRN--QKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK 280 (447)
T ss_pred eEEEEEEEECCCCCEEEEeceecc----eEecc--cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC
Confidence 668887776 355555333221 12222 122221 2 2467643 46789999999976555 999987
Q ss_pred CCCeEEEeecC
Q 001667 278 EGRSYVCDVNG 288 (1034)
Q Consensus 278 ~g~s~V~DVNG 288 (1034)
+|.+||||||.
T Consensus 281 ~g~~~~iEvNp 291 (447)
T PRK05586 281 DGNFYFMEMNT 291 (447)
T ss_pred CCCEEEEEEEC
Confidence 45589999993
No 41
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.70 E-value=4e-08 Score=114.07 Aligned_cols=203 Identities=18% Similarity=0.248 Sum_probs=120.4
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccccc
Q 001667 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~ 132 (1034)
.||++++-| ||-- ..+.+.++..+ ||+-++.....+++||....++|+++|||+|.+....-. +.
T Consensus 73 ~~D~I~pg~--g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~----------~~ 140 (472)
T PRK07178 73 GCDALHPGY--GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLA----------DL 140 (472)
T ss_pred CCCEEEeCC--CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCC----------CH
Confidence 489999855 3322 23445666666 567788999999999999999999999999876532110 01
Q ss_pred CCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCCCCe
Q 001667 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGT 209 (1034)
Q Consensus 133 ~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~~~G~ 209 (1034)
++....- ..++.|+|+||.+|. -|.|++ +.+....-...|+--.. ..-.+..++.|+||. ++.
T Consensus 141 ~e~~~~~-~~igyPvvvKp~~gg-----------Gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~ 206 (472)
T PRK07178 141 DEALAEA-ERIGYPVMLKATSGG-----------GGRGIR-RCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPK 206 (472)
T ss_pred HHHHHHH-HHcCCcEEEEeCCCC-----------CCCCce-EeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCe
Confidence 1111100 123479999999986 344543 22211111111110000 000134688999994 455
Q ss_pred eeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCe-eeeEeeeee-CCC
Q 001667 210 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQA-VCGFDLLRC-EGR 280 (1034)
Q Consensus 210 DVKvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek----~iA~k~~~afgq~-VCGfDLLRs-~g~ 280 (1034)
.+-|-++| ++++|...|... .-+++..--|..-...|+++.+ ++|.++++++|.. ++.+|++-. +|+
T Consensus 207 eiev~v~~d~~G~~v~~~er~~s----~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~ 282 (472)
T PRK07178 207 HIEVQILADSHGNVVHLFERDCS----IQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGE 282 (472)
T ss_pred EEEEEEEEECCCCEEEEEccccc----eEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCC
Confidence 56555554 356666555431 1122222222221226777655 4899999999975 455999985 788
Q ss_pred eEEEeecC
Q 001667 281 SYVCDVNG 288 (1034)
Q Consensus 281 s~V~DVNG 288 (1034)
+||+|||.
T Consensus 283 ~y~iEiNp 290 (472)
T PRK07178 283 VYFMEMNT 290 (472)
T ss_pred EEEEEEeC
Confidence 99999993
No 42
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.69 E-value=4.2e-08 Score=110.36 Aligned_cols=195 Identities=19% Similarity=0.249 Sum_probs=117.9
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCe
Q 001667 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~ 135 (1034)
.||++ +|-....|. .++++++.. ..+.++..+..+.+||...-+.|+++|||+|++..+.... +....
T Consensus 63 ~~dvi-t~e~e~i~~-~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~---------~l~~~ 130 (372)
T PRK06019 63 QCDVI-TYEFENVPA-EALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAE---------DLEAA 130 (372)
T ss_pred cCCEE-EeCcCCCCH-HHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHH---------HHHHH
Confidence 57764 443344554 566777666 5577999999999999999999999999999999887621 11122
Q ss_pred EEEcceecCCCEEEeeccc-c-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001667 136 VEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1034)
Q Consensus 136 i~v~G~~~~kPfVeKpv~g-e-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1034)
+. .++.|+|+||..| . -+++++-.... -....++.+ ....+|+||||+- |..+-|
T Consensus 131 ~~----~~g~P~vlKp~~~g~~g~Gv~~v~~~~---el~~a~~~~---------------~~~~~ivEe~I~~-~~E~sv 187 (372)
T PRK06019 131 LA----DLGLPAVLKTRRGGYDGKGQWVIRSAE---DLEAAWALL---------------GSVPCILEEFVPF-EREVSV 187 (372)
T ss_pred HH----HcCCcEEEEeCCCCcCCCCeEEECCHH---HHHHHHHhc---------------CCCCEEEEecCCC-CeEEEE
Confidence 21 1346999999984 3 23443332211 111122221 2357999999973 455666
Q ss_pred EEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCe-eeeEeeeeeCCC-eEEEeec
Q 001667 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVN 287 (1034)
Q Consensus 214 ytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~iA~k~~~afgq~-VCGfDLLRs~g~-s~V~DVN 287 (1034)
.+++.. .-+.+--|+.. .+.++-.-.....|..+++ +=+++|.+++++||.. |+++|+..+.++ +||+|+|
T Consensus 188 ~~~~~~--~G~~~~~p~~e-~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~Ein 264 (372)
T PRK06019 188 IVARGR--DGEVVFYPLVE-NVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIA 264 (372)
T ss_pred EEEECC--CCCEEEeCCcc-cEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEec
Confidence 555321 00011122111 1111100011223445654 3457889999999975 888999998555 9999999
Q ss_pred C
Q 001667 288 G 288 (1034)
Q Consensus 288 G 288 (1034)
-
T Consensus 265 p 265 (372)
T PRK06019 265 P 265 (372)
T ss_pred C
Confidence 3
No 43
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.69 E-value=6.2e-08 Score=120.34 Aligned_cols=202 Identities=14% Similarity=0.108 Sum_probs=126.7
Q ss_pred CcccCCcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccc
Q 001667 51 IEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (1034)
Q Consensus 51 ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~ 130 (1034)
+..++.+|+++++.-.+ ..-|-+-.+..+.. -|+.++-.+.+||...-+.|+++|||+|++..++...
T Consensus 65 ~~~~~~i~~V~~~se~~--v~~aa~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~--------- 132 (887)
T PRK02186 65 VSSLDGVAGIMSSSEYF--IEVASEVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRA--------- 132 (887)
T ss_pred HHhcCCCCEEEeCchhh--HHHHHHHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHH---------
Confidence 45666788888873322 32333444444533 3778889999999999999999999999999887621
Q ss_pred ccCCeEEEcceecCCCEEEeeccccC-cceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCe
Q 001667 131 EEEDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (1034)
Q Consensus 131 e~~d~i~v~G~~~~kPfVeKpv~ged-Hni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~ 209 (1034)
+..+.+. .+..|+|+||++|.. .+|++. .+.. -....+..+. . ...+.||.||||+-.--
T Consensus 133 e~~~~~~----~~~~PvVVKP~~g~gS~GV~~v--~~~~-el~~a~~~~~-----------~-~~~~~~lvEEfI~G~E~ 193 (887)
T PRK02186 133 VALDALD----GLTYPVVVKPRMGSGSVGVRLC--ASVA-EAAAHCAALR-----------R-AGTRAALVQAYVEGDEY 193 (887)
T ss_pred HHHHHHH----hCCCCEEEEeCCCCCCCCeEEE--CCHH-HHHHHHHHHH-----------h-cCCCcEEEeecccCCcE
Confidence 1122222 234699999999861 222221 1110 0011111110 0 12678999999986556
Q ss_pred eeEEEEECCc-eEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhCC--eeeeEeeeeeCCCeE
Q 001667 210 DVKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ--AVCGFDLLRCEGRSY 282 (1034)
Q Consensus 210 DVKvytVG~~-~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~E----k~iA~k~~~afgq--~VCGfDLLRs~g~s~ 282 (1034)
.|-+++.++. ++.+..++.......|.-. +.-+|..++++. .+++.++++++|. -++++|+....+++|
T Consensus 194 sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~----g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g~~ 269 (887)
T PRK02186 194 SVETLTVARGHQVLGITRKHLGPPPHFVEI----GHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVV 269 (887)
T ss_pred EEEEEEECCcEEEEEEEeeecCCCCCeEEe----ccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCCEE
Confidence 6777776543 4555555542111112111 123567777643 4678999999998 468899999999999
Q ss_pred EEeec
Q 001667 283 VCDVN 287 (1034)
Q Consensus 283 V~DVN 287 (1034)
|||||
T Consensus 270 liEIn 274 (887)
T PRK02186 270 IIEIN 274 (887)
T ss_pred EEEEC
Confidence 99999
No 44
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.65 E-value=4.5e-08 Score=98.28 Aligned_cols=146 Identities=25% Similarity=0.351 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHH
Q 001667 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 174 (1034)
Q Consensus 95 ~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~L 174 (1034)
.||++.++.|+++|||+|.++...... .. ..|+|+||..|. -|.|+ +.
T Consensus 2 ~dK~~~~~~L~~~gi~~P~~~~~~~~~---------------~~-----~~~~viKp~~G~-----------Gg~~i-~~ 49 (161)
T PF02655_consen 2 SDKLKTYKFLKELGIPVPTTLRDSEPE---------------PI-----DGPWVIKPRDGA-----------GGEGI-RI 49 (161)
T ss_dssp TSHHHHHHHHTTT-S--------EESS----------------------SSSEEEEESS-------------------B-
T ss_pred CCHHHHHHHHHccCCCCCCcccccccc---------------cc-----CCcEEEEeCCCC-----------CCCCe-EE
Confidence 589999999999999999554333210 01 369999999997 34444 24
Q ss_pred HhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCc---eEEEeeccCCC-CCCeeeecCCCCceeeeee-
Q 001667 175 FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPV-VDGVVMRNPDGKEVRYPVL- 249 (1034)
Q Consensus 175 frkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~---~vhAe~RKSPv-vDG~vrrN~hgke~r~~v~- 249 (1034)
++.- .+... . .....|+||||+ |+-.-+.++... .+-+..|+-=. -++.|+ .+|++ .+..
T Consensus 50 ~~~~----~~~~~----~-~~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~---~~G~~-~~~~~ 114 (161)
T PF02655_consen 50 VDSE----DELEE----F-LNKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFR---YCGGI-VPADT 114 (161)
T ss_dssp -SS------TTE------------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----TE---EEEEE-ES---
T ss_pred ECCc----hhhcc----c-cccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccceee---ecccc-cccCC
Confidence 4322 11111 0 111129999997 555555444322 33444444310 011121 22222 2333
Q ss_pred -CCHHHHHHHHHHHHHh-CC-eeeeEeeeeeCCCeEEEeec
Q 001667 250 -LTPNEKQMAREVCIAF-RQ-AVCGFDLLRCEGRSYVCDVN 287 (1034)
Q Consensus 250 -Lt~~Ek~iA~k~~~af-gq-~VCGfDLLRs~g~s~V~DVN 287 (1034)
..++=..+|.+++++| |+ -.+|||++...+++||+|||
T Consensus 115 ~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~~~~~viEIN 155 (161)
T PF02655_consen 115 PLKEEIIELARRIAEALPGLRGYVGIDFILDDGGPYVIEIN 155 (161)
T ss_dssp -HHHHHHHHHHHHHTTSTT--EEEEEEEEESS-SEEEEEEE
T ss_pred chHHHHHHHHHHHHHHcCCCeeeEeEEEEEeCCcEEEEEEc
Confidence 3455567889999999 76 58999999999999999999
No 45
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.65 E-value=4e-08 Score=115.15 Aligned_cols=203 Identities=16% Similarity=0.232 Sum_probs=122.0
Q ss_pred CcCeeeccccCCCchH--HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccccc
Q 001667 56 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~--kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~ 132 (1034)
.+|++++.| ||..+ ...+.++..+ ||+-++.+...++.||....++|+++|||+|......-..+ .+.
T Consensus 74 ~~daI~pg~--gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~-------~e~ 144 (499)
T PRK08654 74 GADAIHPGY--GFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDI-------EEA 144 (499)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCH-------HHH
Confidence 368899876 34332 3455666666 56778899999999999999999999999987654211000 011
Q ss_pred CCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeee
Q 001667 133 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (1034)
Q Consensus 133 ~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DV 211 (1034)
...+. .++.|+|+||..|. -.++.+-.... -....|+... ++-. ..+ .++.++.|+||. ++..+
T Consensus 145 ~~~a~----~igyPvvIKp~~GgGG~Gv~iv~~~~---eL~~a~~~~~---~~a~---~~f-~~~~v~vE~~I~-~~r~i 209 (499)
T PRK08654 145 KEIAE----EIGYPVIIKASAGGGGIGMRVVYSEE---ELEDAIESTQ---SIAQ---SAF-GDSTVFIEKYLE-KPRHI 209 (499)
T ss_pred HHHHH----HhCCCEEEEeCCCCCCCeEEEeCCHH---HHHHHHHHHH---HHHH---HhC-CCCeEEEEeCCC-CCcEE
Confidence 11121 23469999999986 12222221110 1112222211 0000 011 156799999996 35667
Q ss_pred EEEEECC---ceEEEeeccCCCCCCeeeecCCCCceee-e-eeCCHHH----HHHHHHHHHHhCCeeee-EeeeeeCCCe
Q 001667 212 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRY-P-VLLTPNE----KQMAREVCIAFRQAVCG-FDLLRCEGRS 281 (1034)
Q Consensus 212 KvytVG~---~~vhAe~RKSPvvDG~vrrN~hgke~r~-~-v~Lt~~E----k~iA~k~~~afgq~VCG-fDLLRs~g~s 281 (1034)
-|-++|. +++|.-.|...+ -|| |+|-+-+ | ..|+++- .++|.++++++|..=+| ||++-.+|++
T Consensus 210 eVqvl~d~~G~vv~l~~recsi----qrr--~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~g~~ 283 (499)
T PRK08654 210 EIQILADKHGNVIHLGDRECSI----QRR--HQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNF 283 (499)
T ss_pred EEEEEEcCCCCEEEEeeecccc----ccC--ccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCcE
Confidence 7766653 566665565321 122 2332211 2 2366643 46799999999988666 9999888999
Q ss_pred EEEeecC
Q 001667 282 YVCDVNG 288 (1034)
Q Consensus 282 ~V~DVNG 288 (1034)
||||||.
T Consensus 284 yflEiNp 290 (499)
T PRK08654 284 YFLEMNT 290 (499)
T ss_pred EEEEEEC
Confidence 9999993
No 46
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.64 E-value=4.6e-08 Score=113.78 Aligned_cols=204 Identities=16% Similarity=0.195 Sum_probs=120.1
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcE-EEEeccCCCcccccccc
Q 001667 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRY-ALVNREVPYQELDYFIE 131 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~-~~~~r~~p~~~~~~~~e 131 (1034)
.+|++++.|+ |-. -...+.++..+ +|+-++.+...+++||....++|+++|||+|.. ....... ..+
T Consensus 73 ~iDaI~pg~g--~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~-------~~~ 143 (478)
T PRK08463 73 GADAIHPGYG--FLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSES-------MEE 143 (478)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCC-------HHH
Confidence 4789998763 321 12445566666 455588999999999999999999999999774 3322110 001
Q ss_pred cCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCee
Q 001667 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (1034)
Q Consensus 132 ~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~D 210 (1034)
..+.+. .++.|+|+||.+|. -.+|++-.... .....|+... ++ ....-.++.++.|+||.. +..
T Consensus 144 ~~~~~~----~igyPvvvKP~~ggGg~Gv~iv~~~~---eL~~a~~~~~---~~----a~~~~~~~~vlvEefI~~-~~~ 208 (478)
T PRK08463 144 IKIFAR----KIGYPVILKASGGGGGRGIRVVHKEE---DLENAFESCK---RE----ALAYFNNDEVFMEKYVVN-PRH 208 (478)
T ss_pred HHHHHH----HhCCCEEEEeCCCCCCCceEEeCCHH---HHHHHHHHHH---HH----HHHhcCCCcEEEEecCCC-CeE
Confidence 111221 23479999999985 12222222111 1111222110 00 001113567999999974 555
Q ss_pred eEEEEEC---CceEEEeeccCCCCCCeeeecCCCCceeeee-eCCHHHH----HHHHHHHHHhCCeeee-EeeeeeC-CC
Q 001667 211 VKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPNEK----QMAREVCIAFRQAVCG-FDLLRCE-GR 280 (1034)
Q Consensus 211 VKvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v-~Lt~~Ek----~iA~k~~~afgq~VCG-fDLLRs~-g~ 280 (1034)
+-+-++| ++++|...|...+ .+++..--+.. |. .|+++.+ ++|.++++++|..-|| +|++-.. |+
T Consensus 209 iev~v~~d~~g~v~~~~er~~s~----~~~~~~~ie~~-P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~ 283 (478)
T PRK08463 209 IEFQILGDNYGNIIHLCERDCSI----QRRHQKVIEIA-PCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR 283 (478)
T ss_pred EEEEEEEcCCCCEEEEeccCCcc----ccccCceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCC
Confidence 6655554 3466666554321 12221111221 22 4777666 4889999999987666 9999874 78
Q ss_pred eEEEeecC
Q 001667 281 SYVCDVNG 288 (1034)
Q Consensus 281 s~V~DVNG 288 (1034)
+||||||.
T Consensus 284 ~y~iEiN~ 291 (478)
T PRK08463 284 FYFMEMNT 291 (478)
T ss_pred EEEEEEEC
Confidence 99999993
No 47
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.64 E-value=8.2e-08 Score=108.92 Aligned_cols=203 Identities=16% Similarity=0.218 Sum_probs=116.4
Q ss_pred cCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001667 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 134 (1034)
+|++|+.. ..++ ..+.+.++..+ |+.-++..+-.+.+||....++|+++|||+|++..+... . +...
T Consensus 65 id~vi~~~--e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~--~-------~~~~ 133 (423)
T TIGR00877 65 IDLAVIGP--EAPLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDP--E-------EALS 133 (423)
T ss_pred CCEEEECC--chHHHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCH--H-------HHHH
Confidence 67777643 2344 34667788888 666688889999999999999999999999999888662 0 1112
Q ss_pred eEEEcceecCCC-EEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeE
Q 001667 135 FVEVHGNRFWKP-FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (1034)
Q Consensus 135 ~i~v~G~~~~kP-fVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVK 212 (1034)
.+. .++.| +|+||..|. -.++++..... -....+++.-+.+ +. +.+..+|+||||. |..+-
T Consensus 134 ~~~----~~g~P~~VvKp~~~~gg~Gv~~v~~~~---el~~~~~~~~~~~--~g------~~~~~~lvEe~i~--G~E~s 196 (423)
T TIGR00877 134 YIQ----EKGAPAIVVKADGLAAGKGVIVAKTNE---EAIKAVEEILEQK--FG------DAGERVVIEEFLD--GEEVS 196 (423)
T ss_pred HHH----hcCCCeEEEEECCCCCCCCEEEECCHH---HHHHHHHHHHHHh--cC------CCCCeEEEEECcc--CceEE
Confidence 222 13469 999999875 12222222111 1111222211110 10 1245799999997 44554
Q ss_pred E--EEECCceEE-EeeccC-CCCCCeeeecCCCCceeeee-eCCHH-----HHHHHHHHHHHhC------CeeeeEeeee
Q 001667 213 V--YTVGPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPN-----EKQMAREVCIAFR------QAVCGFDLLR 276 (1034)
Q Consensus 213 v--ytVG~~~vh-Ae~RKS-PvvDG~vrrN~hgke~r~~v-~Lt~~-----Ek~iA~k~~~afg------q~VCGfDLLR 276 (1034)
| +.-|..+.. ..+|.- ...+|..--++.|-+.-.|. .|+++ .++++.++.++++ .-++.+|+..
T Consensus 197 v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~ 276 (423)
T TIGR00877 197 LLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLML 276 (423)
T ss_pred EEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEE
Confidence 4 433544332 122211 11222221122221222232 35443 2456666777774 3678899999
Q ss_pred eCCCeEEEeec
Q 001667 277 CEGRSYVCDVN 287 (1034)
Q Consensus 277 s~g~s~V~DVN 287 (1034)
+.+++||||+|
T Consensus 277 t~~g~~viEin 287 (423)
T TIGR00877 277 TKEGPKVLEFN 287 (423)
T ss_pred ECCCcEEEEEE
Confidence 98889999999
No 48
>PRK08462 biotin carboxylase; Validated
Probab=98.63 E-value=9.6e-08 Score=109.43 Aligned_cols=197 Identities=18% Similarity=0.296 Sum_probs=116.6
Q ss_pred CcCeeeccccCCC-ch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEE--EeccCCCccccccc
Q 001667 56 ICDCLIAFYSSGY-PL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYFI 130 (1034)
Q Consensus 56 ~~D~lIsf~s~gf-pl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~--~~r~~p~~~~~~~~ 130 (1034)
.+|+++|-++ | .. ....+.++..+ ||+-++.++..+++||....++|.++|||+|.+.. +.. ..
T Consensus 76 ~~D~i~pg~g--~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~---------~~ 144 (445)
T PRK08462 76 EADAIFPGYG--FLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKS---------YE 144 (445)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCC---------HH
Confidence 4889998874 3 11 22334677777 46789999999999999999999999999988653 222 00
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccC----CccccccccceEEeeccCC
Q 001667 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP----DVRRVRREGSYIYEEFMPT 206 (1034)
Q Consensus 131 e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p----~~~~~r~~gsyIyEEFi~~ 206 (1034)
+..+.+. .++-|+|+||.+|. .|.|+. +.+....-...|.- -...+ .++.+|.||||..
T Consensus 145 ~~~~~~~----~~g~PvvvKP~~g~-----------gs~Gv~-~v~~~~eL~~~~~~~~~~~~~~~-~~~~vlvEe~i~g 207 (445)
T PRK08462 145 EAKKIAK----EIGYPVILKAAAGG-----------GGRGMR-VVEDESDLENLYLAAESEALSAF-GDGTMYMEKFINN 207 (445)
T ss_pred HHHHHHH----HcCCCEEEEeCCCC-----------CCCCeE-EECCHHHHHHHHHHHHHHHHhcc-CCCcEEEeccCCC
Confidence 1111121 23469999999986 344442 22111100000100 00011 2567999999954
Q ss_pred CCeeeEEEEECC---ceEEEeeccCCCCCCeeeecCCCCce-eeee-eCCH----HHHHHHHHHHHHhCCee-eeEeeee
Q 001667 207 GGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEV-RYPV-LLTP----NEKQMAREVCIAFRQAV-CGFDLLR 276 (1034)
Q Consensus 207 ~G~DVKvytVG~---~~vhAe~RKSPvvDG~vrrN~hgke~-r~~v-~Lt~----~Ek~iA~k~~~afgq~V-CGfDLLR 276 (1034)
+..+.|.++|. ++++.-.|...+ .++ |.+-+ ..|. .|++ +=+++|.++++++|..= +-||++-
T Consensus 208 -~~e~~v~v~~~~~g~~~~~g~~~~~~----~~~--~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~ 280 (445)
T PRK08462 208 -PRHIEVQILGDKHGNVIHVGERDCSL----QRR--HQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLL 280 (445)
T ss_pred -CeEEEEEEEECCCCCEEEEEeccccc----eec--ccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEE
Confidence 55577766643 444442222210 111 11111 1122 4665 34568899999999853 3399987
Q ss_pred e-CCCeEEEeec
Q 001667 277 C-EGRSYVCDVN 287 (1034)
Q Consensus 277 s-~g~s~V~DVN 287 (1034)
. +|++||||||
T Consensus 281 ~~~g~~~viEiN 292 (445)
T PRK08462 281 DSNLDFYFMEMN 292 (445)
T ss_pred eCCCCEEEEEEE
Confidence 7 4689999999
No 49
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.63 E-value=9e-08 Score=120.88 Aligned_cols=199 Identities=18% Similarity=0.278 Sum_probs=127.7
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001667 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 134 (1034)
.+|.+|+.++.-.++ .+-..++..+ |+.-|+......++||.+..++|+++|||+|++..+.... +..+
T Consensus 629 ~idgVI~~~gg~~~~-~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~e---------e~~~ 698 (1050)
T TIGR01369 629 KPEGVIVQFGGQTPL-NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVE---------EAVE 698 (1050)
T ss_pred CCCEEEEccCcHhHH-HHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCHH---------HHHH
Confidence 478999888765444 2233444555 4456899999999999999999999999999999887621 1222
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC-CCeeeE
Q 001667 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVK 212 (1034)
Q Consensus 135 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~-~G~DVK 212 (1034)
.+. .++.|+|+||..|. -.++.+.+... -.+..++..- ....+..+|.||||+. .--+|-
T Consensus 699 ~~~----~igyPvIVKP~~~~Gg~gv~iv~~~e---eL~~~l~~a~-----------~~s~~~~vlVeefI~~G~E~~Vd 760 (1050)
T TIGR01369 699 FAS----EIGYPVLVRPSYVLGGRAMEIVYNEE---ELRRYLEEAV-----------EVSPEHPVLIDKYLEDAVEVDVD 760 (1050)
T ss_pred HHH----hcCCCEEEEECCCCCCCCeEEECCHH---HHHHHHHHHH-----------HhCCCCCEEEeecCCCCeEEEEE
Confidence 222 12469999999874 23333332211 1111122110 1123567999999974 456888
Q ss_pred EEEECCceEEEe-eccCCCCCCeeeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhCC-eeeeEeeeeeCCCeEE
Q 001667 213 VYTVGPEYAHAE-ARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (1034)
Q Consensus 213 vytVG~~~vhAe-~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~----Ek~iA~k~~~afgq-~VCGfDLLRs~g~s~V 283 (1034)
++..|++++... ... ..+.+.|.|... +|. .|+++ =+++|.++++++|. -+|.||++...+++||
T Consensus 761 ~l~d~g~v~i~~i~e~------~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~~yv 834 (1050)
T TIGR01369 761 AVSDGEEVLIPGIMEH------IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVYV 834 (1050)
T ss_pred EEEeCCEEEEEEEEEe------ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCeEEE
Confidence 888887665432 111 112345655543 333 67764 35678999999985 3445899999999999
Q ss_pred EeecC
Q 001667 284 CDVNG 288 (1034)
Q Consensus 284 ~DVNG 288 (1034)
+|||.
T Consensus 835 IEvNp 839 (1050)
T TIGR01369 835 IEVNP 839 (1050)
T ss_pred EEEeC
Confidence 99994
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.61 E-value=5.3e-08 Score=111.47 Aligned_cols=205 Identities=14% Similarity=0.151 Sum_probs=115.3
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEE--EEeccCCCccccccccc
Q 001667 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~--~~~r~~p~~~~~~~~e~ 132 (1034)
.||++|+.++--.--..+.+.++..+ ||+.++.++-.+++||....++|+++|||+|.+. .++.. . +.
T Consensus 74 ~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~--~-------~~ 144 (451)
T PRK08591 74 GADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDE--E-------EA 144 (451)
T ss_pred CCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCH--H-------HH
Confidence 48999997732111123455667667 4677999999999999999999999999998864 33220 0 11
Q ss_pred CCeEEEcceecCCCEEEeeccccC-cceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeee
Q 001667 133 EDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (1034)
Q Consensus 133 ~d~i~v~G~~~~kPfVeKpv~ged-Hni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DV 211 (1034)
.+.+. .++.|+|+||++|.. .++++-. +.. -....++.....+ . ....+..+++||||+. +..+
T Consensus 145 ~~~~~----~~g~PvvvKP~~g~gs~Gv~iv~--~~~-el~~~~~~~~~~~---~----~~~~~~~vlvEe~i~g-~~e~ 209 (451)
T PRK08591 145 LAIAK----EIGYPVIIKATAGGGGRGMRVVR--TEA-ELEKAFSMARAEA---K----AAFGNPGVYMEKYLEN-PRHI 209 (451)
T ss_pred HHHHH----HcCCCEEEEECCCCCCceEEEEC--CHH-HHHHHHHHHHHHH---H----HhcCCCCEEEEeCCCC-CcEE
Confidence 11111 234699999999861 2222222 111 1112222210000 0 0001457899999964 4445
Q ss_pred EEEEEC---CceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCe-eeeEeeeee-CCCeE
Q 001667 212 KVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC-EGRSY 282 (1034)
Q Consensus 212 KvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~iA~k~~~afgq~-VCGfDLLRs-~g~s~ 282 (1034)
-+-++| +++++.-.|... ..+++..-.+..-+..|++ +=.++|.++++++|.. ++.||++.. +|++|
T Consensus 210 ~v~v~~d~~g~~~~~~~~~~~----~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~ 285 (451)
T PRK08591 210 EIQVLADGHGNAIHLGERDCS----LQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFY 285 (451)
T ss_pred EEEEEEcCCCCEEEEeccccc----ceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEE
Confidence 544443 345554222211 0010000000000123554 3346889999999976 344999988 78899
Q ss_pred EEeecC
Q 001667 283 VCDVNG 288 (1034)
Q Consensus 283 V~DVNG 288 (1034)
|+|||.
T Consensus 286 viEINp 291 (451)
T PRK08591 286 FIEMNT 291 (451)
T ss_pred EEEEEC
Confidence 999994
No 51
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.55 E-value=3.6e-07 Score=104.39 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=113.8
Q ss_pred cCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001667 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 134 (1034)
+|++++.++- .+. ..+...++..+ |+.-++..+-.+.+||....++|.++|||+|++.......+ .+..+
T Consensus 75 id~I~p~~~~-~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~-------~e~~~ 146 (450)
T PRK06111 75 AEAIHPGYGL-LSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDA-------EEAIA 146 (450)
T ss_pred CCEEEeCCCc-cccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCH-------HHHHH
Confidence 4778876521 111 22445666666 45668888899999999999999999999998632111110 01111
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001667 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1034)
Q Consensus 135 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1034)
.+. .++.|+|+||.+|. -+++++..... -....++........+ ..++.+|.||||.- +..+-+
T Consensus 147 ~~~----~~~~P~VvKP~~g~gs~Gv~iv~~~~---el~~a~~~~~~~~~~~-------~~~~~~lvEe~i~g-~~e~~v 211 (450)
T PRK06111 147 IAR----QIGYPVMLKASAGGGGIGMQLVETEQ---ELTKAFESNKKRAANF-------FGNGEMYIEKYIED-PRHIEI 211 (450)
T ss_pred HHH----HhCCCEEEEeCCCCCCceEEEECCHH---HHHHHHHHHHHHHHHh-------cCCCcEEEEcccCC-CcEEEE
Confidence 121 23469999999985 24444443222 1222333321100000 12457999999973 344554
Q ss_pred EEEC---CceEEEeeccCCCCCCeeeecCCCCcee-eee-eCCH----HHHHHHHHHHHHhCC-eeeeEeeeeeCCC-eE
Q 001667 214 YTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVR-YPV-LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SY 282 (1034)
Q Consensus 214 ytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r-~~v-~Lt~----~Ek~iA~k~~~afgq-~VCGfDLLRs~g~-s~ 282 (1034)
-+++ ++.++.-.|..++.. . |.+-.. .|. .+++ +=+++|.++++++|. .++.||++...++ +|
T Consensus 212 ~v~~~~~g~~~~~~~~~~~~~~----~--~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~ 285 (450)
T PRK06111 212 QLLADTHGNTVYLWERECSVQR----R--HQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFY 285 (450)
T ss_pred EEEEcCCCCEEEEEeecccccc----c--ccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEE
Confidence 3333 334444333322110 0 111000 011 1332 345788899999998 4777999988666 99
Q ss_pred EEeecC
Q 001667 283 VCDVNG 288 (1034)
Q Consensus 283 V~DVNG 288 (1034)
|||||.
T Consensus 286 viEiN~ 291 (450)
T PRK06111 286 FLEMNT 291 (450)
T ss_pred EEEEEC
Confidence 999994
No 52
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.53 E-value=2e-07 Score=107.60 Aligned_cols=204 Identities=13% Similarity=0.124 Sum_probs=123.7
Q ss_pred cCeeeccccCCCchH-HHHHHHHHcCCcc-cCCcchhhHHhhHHHHHHHHHhCCCCCCcEE-EEeccCCCcccccccccC
Q 001667 57 CDCLIAFYSSGYPLE-KAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIEEE 133 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p~~-iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~-~~~r~~p~~~~~~~~e~~ 133 (1034)
+|.+|+.. +-||. .....++..+..+ ..+.++-.+.+||....+.|.++|||+|.+. .+.... +..
T Consensus 66 id~Vi~~~--d~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~---------e~~ 134 (435)
T PRK06395 66 VDIVFVGP--DPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEK---------DAA 134 (435)
T ss_pred CCEEEECC--ChHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChH---------HHH
Confidence 78888863 34663 3345566667544 4888899999999999999999999998543 332210 111
Q ss_pred C-eEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeE
Q 001667 134 D-FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (1034)
Q Consensus 134 d-~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVK 212 (1034)
. +..+ ..|+|+||..+. .|.|+.....+..+....++.-......++.+|+||||.-.=-.|=
T Consensus 135 ~~~~~~-----~~PvVVKP~~~s-----------ggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~E~Svd 198 (435)
T PRK06395 135 RDYITS-----MKDVAVKPIGLT-----------GGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGEEFSLQ 198 (435)
T ss_pred HHHHhh-----CCCEEEEeCCCC-----------CCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCceEEEE
Confidence 1 1123 369999999987 6778753321111111111100001133577999999964335666
Q ss_pred EEEECCceEEE-eecc-CCCCCCeeeecCCCCceee-----eeeCCHHHH----HHHHHHHHHhCC------eeeeEeee
Q 001667 213 VYTVGPEYAHA-EARK-SPVVDGVVMRNPDGKEVRY-----PVLLTPNEK----QMAREVCIAFRQ------AVCGFDLL 275 (1034)
Q Consensus 213 vytVG~~~vhA-e~RK-SPvvDG~vrrN~hgke~r~-----~v~Lt~~Ek----~iA~k~~~afgq------~VCGfDLL 275 (1034)
+|+-|..+..- .++. =.+.||++-=|+.|=+.-. +-.|++++. +|+.+++++++. -|..+++.
T Consensus 199 ~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~ 278 (435)
T PRK06395 199 AFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFM 278 (435)
T ss_pred EEEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEE
Confidence 67767665222 1110 1124666555655444222 123777554 567788899994 45568888
Q ss_pred eeCCCeEEEeec
Q 001667 276 RCEGRSYVCDVN 287 (1034)
Q Consensus 276 Rs~g~s~V~DVN 287 (1034)
-+.+||||+|+|
T Consensus 279 lt~~gp~ViE~n 290 (435)
T PRK06395 279 DTPNGVKVIEIN 290 (435)
T ss_pred EeCCCcEEEEEe
Confidence 899999999999
No 53
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.53 E-value=1.6e-07 Score=103.03 Aligned_cols=186 Identities=24% Similarity=0.296 Sum_probs=120.2
Q ss_pred CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEEec
Q 001667 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (1034)
Q Consensus 86 Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~IYyp 164 (1034)
|+-..-.++.||....+++.+.|||+|..++..... -.........++... +.+ .-..+||.||..|.
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~-~~~~~~~~~~~~l~~~l~~-~~~~~~viKP~~G~--------- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRD-YFDLREQHSIEDLEEFLRK-HAPDRFVIKPANGS--------- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccce-EEecccccCHHHHHHHHHh-ccCCcEEEEeCCCC---------
Confidence 888888999999999999999999999955522210 000000011112211 111 01269999999997
Q ss_pred cCCCChHHHHHhhhCCCcccccCCcc----cccccc--ceEEeeccCC---------CC-eeeEEEEE----CCceEEEe
Q 001667 165 SSAGGGMKELFRKVGNRSSEFHPDVR----RVRREG--SYIYEEFMPT---------GG-TDVKVYTV----GPEYAHAE 224 (1034)
Q Consensus 165 ~~~GgG~~~Lfrkign~sS~~~p~~~----~~r~~g--syIyEEFi~~---------~G-~DVKvytV----G~~~vhAe 224 (1034)
.|.|+. ++...+. ..+..+.. .....+ .||+||||.- .+ -+|||.|+ ++.++.|+
T Consensus 85 --~G~Gi~-~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~ 159 (285)
T PF14397_consen 85 --GGKGIL-VIDRRDG--SEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAM 159 (285)
T ss_pred --CccCEE-EEEeecC--cccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEE
Confidence 555653 2222211 11111111 112222 8999999863 12 78999999 34678999
Q ss_pred eccCCCCCCeeeecCCCCceeeeeeCC----------------------------------HHHHHHHHHHHHHh-CCee
Q 001667 225 ARKSPVVDGVVMRNPDGKEVRYPVLLT----------------------------------PNEKQMAREVCIAF-RQAV 269 (1034)
Q Consensus 225 ~RKSPvvDG~vrrN~hgke~r~~v~Lt----------------------------------~~Ek~iA~k~~~af-gq~V 269 (1034)
.|-+. .|...-|.|.|++...|-+. ++=.++|.++++.| ++.+
T Consensus 160 lRlg~--~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~ 237 (285)
T PF14397_consen 160 LRLGR--GGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGY 237 (285)
T ss_pred EEeCC--CCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCe
Confidence 99994 77777788877766555432 23356788888877 5799
Q ss_pred eeEeeeeeCCCeEEEeecCc
Q 001667 270 CGFDLLRCEGRSYVCDVNGW 289 (1034)
Q Consensus 270 CGfDLLRs~g~s~V~DVNGw 289 (1034)
.|+|+.=+..||+++|.|..
T Consensus 238 iGWDvait~~Gp~llE~N~~ 257 (285)
T PF14397_consen 238 IGWDVAITEDGPVLLEGNAR 257 (285)
T ss_pred EEEEEEEcCCCcEEEEeeCC
Confidence 99999999888999999943
No 54
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.52 E-value=2.6e-07 Score=106.33 Aligned_cols=198 Identities=18% Similarity=0.239 Sum_probs=113.4
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEE--EEeccCCCccccccc
Q 001667 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~--~~~r~~p~~~~~~~~ 130 (1034)
.||++++-++ |-- ....+.++..+ ||+.++.++-.+++||....++|+++|||+|.+. .+... .
T Consensus 74 ~id~I~pg~g--~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~--~------- 142 (449)
T TIGR00514 74 GADAIHPGYG--FLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDE--E------- 142 (449)
T ss_pred CCCEEEeCCC--ccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCH--H-------
Confidence 5899998762 211 11234556666 5678999999999999999999999999998764 22220 0
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc---cccccccceEEeeccCCC
Q 001667 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV---RRVRREGSYIYEEFMPTG 207 (1034)
Q Consensus 131 e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~---~~~r~~gsyIyEEFi~~~ 207 (1034)
+..+.+. .++.|+|+||.+|. .|.|++ +.+....-...+.--. .....++.+|+||||..
T Consensus 143 e~~~~~~----~ig~PvvvKP~~g~-----------gs~Gv~-~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g- 205 (449)
T TIGR00514 143 ENVRIAK----RIGYPVIIKATAGG-----------GGRGMR-VVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN- 205 (449)
T ss_pred HHHHHHH----HhCCCEEEEeCCCC-----------CCCccE-EECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-
Confidence 1111111 23469999999986 344442 2111100000010000 00012457999999953
Q ss_pred CeeeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCceee--eeeCCHHH----HHHHHHHHHHhCCe-eeeEeeeee
Q 001667 208 GTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRC 277 (1034)
Q Consensus 208 G~DVKvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~--~v~Lt~~E----k~iA~k~~~afgq~-VCGfDLLRs 277 (1034)
+..+-+-+++ +++++...|-. .+.+. +.+-+.+ +..|+++. +++|.++++++|.. ++.||++-+
T Consensus 206 ~~e~~v~v~~d~~g~~~~~~~~~~-----~~~~~-~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~ 279 (449)
T TIGR00514 206 PRHVEIQVLADKYGNAIYLGERDC-----SIQRR-HQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLD 279 (449)
T ss_pred CeEEEEEEEEcCCCCEEEEecccc-----Cceec-ccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEe
Confidence 4555554443 34444432211 11111 1121111 22466543 45688999999975 445999887
Q ss_pred -CCCeEEEeec
Q 001667 278 -EGRSYVCDVN 287 (1034)
Q Consensus 278 -~g~s~V~DVN 287 (1034)
+|.+||+|||
T Consensus 280 ~~g~~~viEiN 290 (449)
T TIGR00514 280 KNGEFYFMEMN 290 (449)
T ss_pred CCCCEEEEEEE
Confidence 6789999999
No 55
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.47 E-value=6.5e-07 Score=103.52 Aligned_cols=194 Identities=18% Similarity=0.220 Sum_probs=115.8
Q ss_pred CCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecC
Q 001667 67 GYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 144 (1034)
Q Consensus 67 gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~ 144 (1034)
-+|+ ..+.++++..+ |+.-.+..+-.+.+||...-++|+++|||+|++..+... . +...++. .++
T Consensus 71 E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~--~-------e~~~~~~----~~g 137 (434)
T PLN02257 71 EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDP--A-------AAKKYIK----EQG 137 (434)
T ss_pred chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH--H-------HHHHHHH----HcC
Confidence 3566 45667887775 445577788899999999999999999999998877551 1 1222232 123
Q ss_pred CCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc--ccc-ccccceEEeeccCCCCeeeEEEE--ECCc
Q 001667 145 KPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRV-RREGSYIYEEFMPTGGTDVKVYT--VGPE 219 (1034)
Q Consensus 145 kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~--~~~-r~~gsyIyEEFi~~~G~DVKvyt--VG~~ 219 (1034)
.|+|+||..+. .|.|+. +.+........+..-. ..+ ..+..+|.||||. |..+-|.+ =|..
T Consensus 138 ~PvVVKp~~~~-----------~GkGV~-iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~ 203 (434)
T PLN02257 138 APIVVKADGLA-----------AGKGVV-VAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVDGEN 203 (434)
T ss_pred CCEEEEcCCCC-----------CCCCEE-EECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEECCCc
Confidence 69999999775 444553 2221111111111000 011 1245799999997 44555533 2333
Q ss_pred eEEE-e-eccCCCCCCeeeecCCCCceeeee-eCCHHHHH-HHHHH-------HHHhCCeeee---Eeeeee--CCCeEE
Q 001667 220 YAHA-E-ARKSPVVDGVVMRNPDGKEVRYPV-LLTPNEKQ-MAREV-------CIAFRQAVCG---FDLLRC--EGRSYV 283 (1034)
Q Consensus 220 ~vhA-e-~RKSPvvDG~vrrN~hgke~r~~v-~Lt~~Ek~-iA~k~-------~~afgq~VCG---fDLLRs--~g~s~V 283 (1034)
+..- + .....+.||+..-|+.|-+.-.|. .++++..+ ++..+ .++.|....| +|++-+ +|+|||
T Consensus 204 ~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~v 283 (434)
T PLN02257 204 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKL 283 (434)
T ss_pred EEEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEE
Confidence 3321 1 123346788888888766554455 37774443 34332 3466666555 566554 567999
Q ss_pred Eeec
Q 001667 284 CDVN 287 (1034)
Q Consensus 284 ~DVN 287 (1034)
+|+|
T Consensus 284 LE~N 287 (434)
T PLN02257 284 LEYN 287 (434)
T ss_pred EEEE
Confidence 9999
No 56
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.47 E-value=3.3e-06 Score=104.18 Aligned_cols=207 Identities=17% Similarity=0.238 Sum_probs=128.1
Q ss_pred CcCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001667 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 133 (1034)
.+|++++-..-++-. -....++++.+ ||+=.+..+..+..||..+-++|+++|||+|++..+.+..-. .+.+
T Consensus 526 ~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~------~~~~ 599 (809)
T PRK14573 526 KVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWK------REPE 599 (809)
T ss_pred cCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhcc------cChH
Confidence 478776654322334 36788999998 677789999999999999999999999999999888752100 0000
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeE
Q 001667 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (1034)
Q Consensus 134 d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVK 212 (1034)
..+.---..++.|+|+||..+- .+.|+. ++.|.. ++..-+. .++-+..+|+|||+. +|..+-
T Consensus 600 ~~~~~~~~~lg~P~iVKP~~~G-----------sS~Gv~----~v~~~~-el~~a~~~a~~~~~~vlVEe~i~-~grEi~ 662 (809)
T PRK14573 600 LCLAHIVEAFSFPMFVKTAHLG-----------SSIGVF----EVHNVE-ELRDKISEAFLYDTDVFVEESRL-GSREIE 662 (809)
T ss_pred HHHHHHHHhcCCCEEEeeCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCcEEEEeccC-CCEEEE
Confidence 0010000124579999999974 233432 122211 1111111 122355689999985 578999
Q ss_pred EEEECCce---EEE--eeccCCCCCCee--eec--CCCC---ceeeeeeCCHH----HHHHHHHHHHHhCC-eeeeEeee
Q 001667 213 VYTVGPEY---AHA--EARKSPVVDGVV--MRN--PDGK---EVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (1034)
Q Consensus 213 vytVG~~~---vhA--e~RKSPvvDG~v--rrN--~hgk---e~r~~v~Lt~~----Ek~iA~k~~~afgq-~VCGfDLL 275 (1034)
|-++|..- +.+ ..+.. ..+.+ ..+ .+|+ .+.+|..|+++ =+++|.++++++|. .+|.+|++
T Consensus 663 v~vl~~~~~~~~~~~~~e~~~--~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~ 740 (809)
T PRK14573 663 VSCLGDGSSAYVIAGPHERRG--SGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFF 740 (809)
T ss_pred EEEEeCCCCceEeccceEEcc--CCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 99998642 221 12221 12222 111 2333 23457778764 35678899999995 46779988
Q ss_pred ee-CCCeEEEeec
Q 001667 276 RC-EGRSYVCDVN 287 (1034)
Q Consensus 276 Rs-~g~s~V~DVN 287 (1034)
=. +|.+||+|||
T Consensus 741 v~~~g~~yv~EiN 753 (809)
T PRK14573 741 LDEEGNFWLSEMN 753 (809)
T ss_pred EcCCCCEEEEEee
Confidence 76 5779999999
No 57
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.44 E-value=2.5e-07 Score=117.51 Aligned_cols=199 Identities=20% Similarity=0.214 Sum_probs=120.3
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEe-ccCCCcccccccc
Q 001667 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVN-REVPYQELDYFIE 131 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~-r~~p~~~~~~~~e 131 (1034)
.+|+++|-|| |-- ....+.++..+ +|+-++.+...+++||....++|.++|||+|...... .+ ..+
T Consensus 74 ~iDaI~PGyG--flsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~--------~ee 143 (1143)
T TIGR01235 74 GVDAIHPGYG--FLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPET--------MEE 143 (1143)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCC--------HHH
Confidence 4788888653 321 12334455555 6777889999999999999999999999999865321 11 001
Q ss_pred cCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCCCC
Q 001667 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGG 208 (1034)
Q Consensus 132 ~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~~~G 208 (1034)
..+... .++.|+|+||..|. -|.|++ ..+....-...|+--.. ..-.++.+++|+||. ++
T Consensus 144 a~~~ae----~iGyPvIVKP~~GG-----------GGrG~r-iV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~ 206 (1143)
T TIGR01235 144 VLDFAA----AIGYPVIIKASWGG-----------GGRGMR-VVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RP 206 (1143)
T ss_pred HHHHHH----HcCCCEEEEECCCC-----------CCCccE-EeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CC
Confidence 111221 23479999999986 344442 22211111111110000 000246789999994 46
Q ss_pred eeeEEEEECC---ceEEEeeccCCCCCCeeeecCCCC--ceeeeeeCCHHH----HHHHHHHHHHhCCe-eeeEeeeee-
Q 001667 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGK--EVRYPVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRC- 277 (1034)
Q Consensus 209 ~DVKvytVG~---~~vhAe~RKSPvvDG~vrrN~hgk--e~r~~v~Lt~~E----k~iA~k~~~afgq~-VCGfDLLRs- 277 (1034)
..|.|-++|. +++|...|-.. +.| -|.| |..-...|+++. .++|.++++++|.. ++.||++-.
T Consensus 207 reIeVqVlgD~~G~vv~l~eRdcs-----vqr-r~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~ 280 (1143)
T TIGR01235 207 RHIEVQLLGDKHGNVVHLFERDCS-----VQR-RHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN 280 (1143)
T ss_pred eEEEEEEEEeCCCCEEEEEecccc-----ccc-cCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC
Confidence 7788877755 46777666542 222 1222 222123566643 46789999999954 666999986
Q ss_pred CCCeEEEeec
Q 001667 278 EGRSYVCDVN 287 (1034)
Q Consensus 278 ~g~s~V~DVN 287 (1034)
+|++||+|||
T Consensus 281 dg~~yfIEVN 290 (1143)
T TIGR01235 281 DGKFYFIEVN 290 (1143)
T ss_pred CCcEEEEEee
Confidence 4689999999
No 58
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.41 E-value=1.5e-06 Score=97.55 Aligned_cols=197 Identities=22% Similarity=0.279 Sum_probs=145.4
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcCCccc--CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001667 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLV--NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~i--Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 133 (1034)
.+|+++|.+..-+ |.+-.+-|+..+.-++ =+.++..++.||.+.|+.++++|||+|.+..++.- .+|...-
T Consensus 66 ~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~------~el~~a~ 138 (329)
T PF15632_consen 66 GIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTA------DELKAAY 138 (329)
T ss_pred CCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCH------HHHHHHH
Confidence 4678888777776 7888888998887655 46788999999999999999999999999998762 1122222
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcccc------------ccccceEEe
Q 001667 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV------------RREGSYIYE 201 (1034)
Q Consensus 134 d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~------------r~~gsyIyE 201 (1034)
..+...| +|+.+||..|. -|.|.++|-+....-...+.|+...+ ..--.+|+.
T Consensus 139 ~~l~~~~----~~~CvKP~~g~-----------gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvM 203 (329)
T PF15632_consen 139 EELRFPG----QPLCVKPAVGI-----------GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVM 203 (329)
T ss_pred HhcCCCC----ceEEEecccCC-----------CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEe
Confidence 3333444 69999999998 55566544444444444455443311 135678999
Q ss_pred eccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCe-eeeEeeee-eCC
Q 001667 202 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLR-CEG 279 (1034)
Q Consensus 202 EFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLR-s~g 279 (1034)
||++..=--|=|..-++++++|-.|+=- | .+..+.-.++=-++|.++|++||++ +-+|.+-. .+|
T Consensus 204 eyL~G~EySVD~l~~~G~viaaV~R~K~-----------G--~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g 270 (329)
T PF15632_consen 204 EYLPGPEYSVDCLADEGRVIAAVPRRKL-----------G--RRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDG 270 (329)
T ss_pred cCCCCCeEEEEEEecCCEEEEEEEEEec-----------C--ceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCC
Confidence 9998844445556666888888877651 2 5566777788888999999999997 66899988 799
Q ss_pred CeEEEeec
Q 001667 280 RSYVCDVN 287 (1034)
Q Consensus 280 ~s~V~DVN 287 (1034)
+|+++|+|
T Consensus 271 ~p~LLEIN 278 (329)
T PF15632_consen 271 NPKLLEIN 278 (329)
T ss_pred CEEEEEeC
Confidence 99999999
No 59
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.40 E-value=5.2e-07 Score=104.77 Aligned_cols=202 Identities=16% Similarity=0.178 Sum_probs=114.7
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEE--EEeccCCCccccccc
Q 001667 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~--~~~r~~p~~~~~~~~ 130 (1034)
.+|+++|.|+ |-- -...+.++..+ +|+-++.++..+++||....++|.++|||+|++. .+..
T Consensus 77 ~~daI~pg~g--~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~----------- 143 (467)
T PRK12833 77 GADAIHPGYG--FLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVAS----------- 143 (467)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCC-----------
Confidence 4788998663 321 12234455555 6788899999999999999999999999998775 3322
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCee
Q 001667 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (1034)
Q Consensus 131 e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~D 210 (1034)
.++....- ..++-|+|+||..|. -...++.-.+.- .....|+... ++-. ..+ .++.++.|+||+. |..
T Consensus 144 -~~e~~~~~-~~igyPvvvKp~~gg-gg~Gv~~v~~~~-eL~~a~~~~~---~~~~---~~~-~~~~vlvEefi~~-~~e 211 (467)
T PRK12833 144 -LDAALEVA-ARIGYPLMIKAAAGG-GGRGIRVAHDAA-QLAAELPLAQ---REAQ---AAF-GDGGVYLERFIAR-ARH 211 (467)
T ss_pred -HHHHHHHH-HHhCCCEEEEECCCC-CCCeEEEECCHH-HHHHHHHHHH---HHHH---Hhc-CCCcEEEEecCCC-CEE
Confidence 11111100 123469999999986 112222211110 1111222110 0000 011 2567899999975 566
Q ss_pred eEEEEECC--ceEEEeeccCCCCCCeeeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhCCe-eeeEeeeee--CC
Q 001667 211 VKVYTVGP--EYAHAEARKSPVVDGVVMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRC--EG 279 (1034)
Q Consensus 211 VKvytVG~--~~vhAe~RKSPvvDG~vrrN~hgke~--r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs--~g 279 (1034)
+-|-++|. .++|.-.|..- +.|. +.|-. .-+..|+++ =+++|.++++++|.. ++.||++-. +|
T Consensus 212 i~v~v~~dg~~~~~~~~~~~~-----~~r~-~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g 285 (467)
T PRK12833 212 IEVQILGDGERVVHLFERECS-----LQRR-RQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARG 285 (467)
T ss_pred EEEEEEeCCCcEEEEEEeecc-----cccC-CccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCC
Confidence 66666665 34554433221 1110 11111 112246653 345889999999986 345898876 36
Q ss_pred CeEEEeecC
Q 001667 280 RSYVCDVNG 288 (1034)
Q Consensus 280 ~s~V~DVNG 288 (1034)
.+||+|||.
T Consensus 286 ~~~~iEvNp 294 (467)
T PRK12833 286 EFYFIEMNT 294 (467)
T ss_pred CEEEEEEEC
Confidence 799999994
No 60
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.40 E-value=1e-06 Score=105.26 Aligned_cols=193 Identities=15% Similarity=0.175 Sum_probs=119.5
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001667 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i 136 (1034)
||++ ++-....+. .++++++..++.+.++.++..+.+||...-+.|+++|||+|++..+.... +....+
T Consensus 84 ~dvI-t~e~e~v~~-~~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~---------el~~~~ 152 (577)
T PLN02948 84 CDVL-TVEIEHVDV-DTLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLE---------SAEKAG 152 (577)
T ss_pred CCEE-EEecCCCCH-HHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHH---------HHHHHH
Confidence 5654 444444444 35588888887677899999999999999999999999999999886510 111112
Q ss_pred EEcceecCCCEEEeecccc--CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEE
Q 001667 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (1034)
Q Consensus 137 ~v~G~~~~kPfVeKpv~ge--dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvy 214 (1034)
. .++.|+|+||.+|- -.++++-.... .....++..+ ..+..+|.|+||+ ....+-|.
T Consensus 153 ~----~ig~P~VvKP~~ggs~g~Gv~~v~~~~---eL~~a~~~~~-------------~~~~~vlvEefI~-~~~EisV~ 211 (577)
T PLN02948 153 D----LFGYPLMLKSRRLAYDGRGNAVAKTEE---DLSSAVAALG-------------GFERGLYAEKWAP-FVKELAVM 211 (577)
T ss_pred H----hcCCcEEEEeCCCCCCCCCeEEECCHH---HHHHHHHHhh-------------CCCCcEEEEecCC-CCeEEEEE
Confidence 1 23479999999753 34444433222 1222232221 1134689999994 23666666
Q ss_pred EECC---ceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCe-eeeEeeeeeCC-CeEEEe
Q 001667 215 TVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEG-RSYVCD 285 (1034)
Q Consensus 215 tVG~---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~iA~k~~~afgq~-VCGfDLLRs~g-~s~V~D 285 (1034)
+++. .+.. -|+++- +.++........|..|++ +=+++|.++++++|.. ++.+|+.-..+ ..||+|
T Consensus 212 v~r~~~G~i~~-----~p~~E~-~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~E 285 (577)
T PLN02948 212 VARSRDGSTRC-----YPVVET-IHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNE 285 (577)
T ss_pred EEECCCCCEEE-----ecCccc-EEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEE
Confidence 6632 2221 353322 222211122235777776 3356788999999743 55789888755 579999
Q ss_pred ec
Q 001667 286 VN 287 (1034)
Q Consensus 286 VN 287 (1034)
||
T Consensus 286 In 287 (577)
T PLN02948 286 VA 287 (577)
T ss_pred Ee
Confidence 99
No 61
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.39 E-value=8.4e-07 Score=112.49 Aligned_cols=195 Identities=13% Similarity=0.181 Sum_probs=122.6
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001667 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 134 (1034)
.+|.+|+-+|.-.++ ++-.-++..+ |+.-++.++...+.||.+..++|++.|||+|++..+... ++
T Consensus 630 ~~dgVI~~~g~~~~~-~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~------------ee 696 (1068)
T PRK12815 630 NIKGVIVQFGGQTAI-NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDE------------EE 696 (1068)
T ss_pred CCCEEEEecCcHHHH-HHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCH------------HH
Confidence 378888877665433 2223344444 556688999999999999999999999999999988661 11
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001667 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1034)
Q Consensus 135 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1034)
....- ..++.|+|+||..|. ..+++|.+... ..+..++.. ...+..+|.||||...--+|-+
T Consensus 697 ~~~~~-~~igyPvVVKP~~~~Gg~gv~iv~~~e---eL~~~l~~~-------------~s~~~~vlIeefI~G~E~~Vd~ 759 (1068)
T PRK12815 697 AFAFA-KRIGYPVLIRPSYVIGGQGMAVVYDEP---ALEAYLAEN-------------ASQLYPILIDQFIDGKEYEVDA 759 (1068)
T ss_pred HHHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHh-------------hcCCCCEEEEEeecCceEEEEE
Confidence 11110 123479999999874 23333333211 112222221 1235679999999534455666
Q ss_pred EEECCceEE-E-eeccCCCCCCeeeecCCCCcee---eeeeCCHH----HHHHHHHHHHHhCCe-eeeEeeeeeCCCeEE
Q 001667 214 YTVGPEYAH-A-EARKSPVVDGVVMRNPDGKEVR---YPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYV 283 (1034)
Q Consensus 214 ytVG~~~vh-A-e~RKSPvvDG~vrrN~hgke~r---~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs~g~s~V 283 (1034)
+.=|..++. + +.+.. +...|.|... .|..|+++ =+++|.++++++|.. ++.||++..++++||
T Consensus 760 i~dg~~v~i~~i~e~~e-------~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~~yv 832 (1068)
T PRK12815 760 ISDGEDVTIPGIIEHIE-------QAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYV 832 (1068)
T ss_pred EEcCCceEEeeEEEEee-------ccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCcEEE
Confidence 655554322 1 21111 1224555432 24567764 346788999999854 667999999999999
Q ss_pred Eeec
Q 001667 284 CDVN 287 (1034)
Q Consensus 284 ~DVN 287 (1034)
||||
T Consensus 833 iEiN 836 (1068)
T PRK12815 833 LEVN 836 (1068)
T ss_pred EEEe
Confidence 9999
No 62
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.30 E-value=1.7e-06 Score=109.72 Aligned_cols=195 Identities=18% Similarity=0.213 Sum_probs=120.4
Q ss_pred CcCeeeccccCCCchHHHH-----HHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001667 56 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai-----~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~ 129 (1034)
.+|++|+.++...+|.-++ ..++..+ ++.-.+..+..+.+||....++|.++|||+|++..++...
T Consensus 82 ~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~-------- 153 (1066)
T PRK05294 82 RPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSME-------- 153 (1066)
T ss_pred CcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCHH--------
Confidence 4799999887665554333 1356666 4666899999999999999999999999999999886621
Q ss_pred cccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCC
Q 001667 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPT 206 (1034)
Q Consensus 130 ~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~~ 206 (1034)
+..+.+. .++-|+|+||..|. .|.|+. +.+ +.. ++..-+. .....+.+|+||||+-
T Consensus 154 -e~~~~~~----~ig~PvVVKP~~g~-----------gg~Gv~-iv~---~~e-eL~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 154 -EALEVAE----EIGYPVIIRPSFTL-----------GGTGGG-IAY---NEE-ELEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred -HHHHHHH----HcCCCeEEEcCCCC-----------CCCCeE-EEC---CHH-HHHHHHHHHHhhCCCCeEEEEEcccC
Confidence 1112221 22369999999874 333432 111 111 1110000 0112457899999963
Q ss_pred CCeeeEEEEECC---ceE--EEeeccCCCCCCeeeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhCCe--eeeE
Q 001667 207 GGTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQA--VCGF 272 (1034)
Q Consensus 207 ~G~DVKvytVG~---~~v--hAe~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~E----k~iA~k~~~afgq~--VCGf 272 (1034)
. ..+-+-++.. +++ ..+.+..| .| .|.+++. .|. .|++++ +++|.++++++|.. +|.|
T Consensus 213 ~-~Eisv~v~rd~~g~~~~~~~~e~~dp--~g-----ih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~v 284 (1066)
T PRK05294 213 W-KEYEYEVMRDKNDNCIIVCSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNV 284 (1066)
T ss_pred c-eEEEEEEEEcCCCCEEEEeeeeeccc--cc-----eecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEE
Confidence 1 2333322211 111 12233333 12 2444442 233 578755 37899999999998 9999
Q ss_pred eeeee--CCCeEEEeec
Q 001667 273 DLLRC--EGRSYVCDVN 287 (1034)
Q Consensus 273 DLLRs--~g~s~V~DVN 287 (1034)
|+.-. +|..||+|||
T Consensus 285 ef~~~~~~g~~~viEiN 301 (1066)
T PRK05294 285 QFALNPKDGRYIVIEMN 301 (1066)
T ss_pred EEEEECCCCcEEEEEee
Confidence 99876 3679999999
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.30 E-value=1.3e-06 Score=111.39 Aligned_cols=198 Identities=20% Similarity=0.228 Sum_probs=116.5
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEE--EeccCCCccccccc
Q 001667 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYFI 130 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~--~~r~~p~~~~~~~~ 130 (1034)
.+|++++.| ||-- ....+-++..+ +|+-++.+...+++||....++|.++|||+|.... +... .
T Consensus 78 ~iDaI~Pgy--GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~---------e 146 (1146)
T PRK12999 78 GVDAIHPGY--GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDI---------E 146 (1146)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCH---------H
Confidence 488999865 3322 12233344444 56778999999999999999999999999976543 2220 0
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCCC
Q 001667 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTG 207 (1034)
Q Consensus 131 e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~~~ 207 (1034)
+..+... .++.|+|+||..|. .|.|++ +.+....-...|.--.+ ....++.+++|+||. +
T Consensus 147 ea~~~a~----~iGyPvVVKP~~Gg-----------GGrGv~-vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~-g 209 (1146)
T PRK12999 147 EALEFAE----EIGYPIMLKASAGG-----------GGRGMR-IVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE-N 209 (1146)
T ss_pred HHHHHHH----HhCCCEEEEECCCC-----------CCCCeE-EeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-C
Confidence 1111111 23479999999986 334442 22111000000110000 001256799999996 3
Q ss_pred CeeeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCc--eeeeeeCCHHH----HHHHHHHHHHhCCee-eeEeeeee
Q 001667 208 GTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKE--VRYPVLLTPNE----KQMAREVCIAFRQAV-CGFDLLRC 277 (1034)
Q Consensus 208 G~DVKvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke--~r~~v~Lt~~E----k~iA~k~~~afgq~V-CGfDLLRs 277 (1034)
+..|-|-++| ++++|--.|-.. +.|+ |.|- ..-...|+++. .++|.++++++|..= +.+|++-.
T Consensus 210 ~~~ieVqvl~D~~G~vv~l~erdcs-----vqrr-~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd 283 (1146)
T PRK12999 210 PRHIEVQILGDKHGNVVHLYERDCS-----VQRR-HQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVD 283 (1146)
T ss_pred CeEEEEEEEEECCCCEEEEEccccc-----eeec-CccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE
Confidence 4556665554 355665444332 2221 2332 22123567654 348899999999854 44999987
Q ss_pred C-CCeEEEeec
Q 001667 278 E-GRSYVCDVN 287 (1034)
Q Consensus 278 ~-g~s~V~DVN 287 (1034)
. |++|++|||
T Consensus 284 ~dg~~yfIEIN 294 (1146)
T PRK12999 284 ADGNFYFIEVN 294 (1146)
T ss_pred CCCCEEEEEEE
Confidence 4 589999999
No 64
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.28 E-value=2.4e-06 Score=100.23 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=109.5
Q ss_pred HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEE
Q 001667 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVE 149 (1034)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVe 149 (1034)
+..+.++..+ ||+.-+..+-.+..||..+.++++++|||+|++.++..+. .++... +....++-|+|+
T Consensus 117 ~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~----------~eel~~~~~~~~IGyPvVV 186 (493)
T PRK06524 117 ETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDS----------YDELSALAHGAGLGDDLVV 186 (493)
T ss_pred HHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCC----------HHHHHHHHHhccCCCcEEE
Confidence 4555556666 6779999999999999999999999999999998764321 011111 111124579999
Q ss_pred eecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCee--eEEEEECC-ceEEEee
Q 001667 150 KPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD--VKVYTVGP-EYAHAEA 225 (1034)
Q Consensus 150 Kpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~D--VKvytVG~-~~vhAe~ 225 (1034)
||..|. -+++++-..... ...++.++ -.+..+|+|+||. |.- |=|++-+. .+++.-.
T Consensus 187 KP~~GGSS~GV~~Vkn~eE---Le~a~~~~--------------~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~ 247 (493)
T PRK06524 187 QTPYGDSGSTTFFVRGQRD---WDKYAGGI--------------VGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAM 247 (493)
T ss_pred EECCCCCCcCEEEeCCHHH---HHHHHHHh--------------cCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccc
Confidence 999874 233333222110 11111111 0124578899985 433 22343332 2322211
Q ss_pred ccCCCCCCeeeecCCCCc---eeeeeeCCH----HHHHHHHHHHHHhC----CeeeeEeeeee--CCCeEEEeec
Q 001667 226 RKSPVVDGVVMRNPDGKE---VRYPVLLTP----NEKQMAREVCIAFR----QAVCGFDLLRC--EGRSYVCDVN 287 (1034)
Q Consensus 226 RKSPvvDG~vrrN~hgke---~r~~v~Lt~----~Ek~iA~k~~~afg----q~VCGfDLLRs--~g~s~V~DVN 287 (1034)
+. ++-..++. .-.++. ...|..|++ +=+++|.+++++++ ..+++||++-. +|+.|++|||
T Consensus 248 ~e-~vg~~Ei~-~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 248 TS-LVGYPELT-PYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred cc-cccceEEE-EccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 11 11000222 112222 245778888 56678899999983 68899999987 5789999999
No 65
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.22 E-value=1.4e-06 Score=91.34 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=97.7
Q ss_pred HHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccc-cCcceEEEeccCCCChHHHHHhhhCCC
Q 001667 103 QLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNR 181 (1034)
Q Consensus 103 iL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~g-edHni~IYyp~~~GgG~~~Lfrkign~ 181 (1034)
+|+++|||||+++.+++.. ...+.+.--=..++.|+|+||..+ +--+|.+ -.+ ...|...+..
T Consensus 1 l~~~~gI~tp~~~~~~~~~---------~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~--v~~----~~el~~ai~~- 64 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNE---------DDSDSIEKILEDLGFPLFVKPASEGSSIGISK--VHN----EEELEEAIEK- 64 (203)
T ss_dssp HHHHTT-BB-SEEEEETTS---------HHHHHHHHHHHHHSSSEEEEESSTSTTTTEEE--ESS----HHHHHHHHHH-
T ss_pred ChhhcCCCCCCEEEEeccc---------ccchhHHHHHhhcCCCEEEEECCCCccEEEEE--cCC----HHHHHHHHHH-
Confidence 5889999999999999831 011111111123457999999986 3233332 111 1123222211
Q ss_pred cccccCCccccccccceEEeeccCCCCeeeEEEEEC---CceEEEeeccCCCCCCeeeec------CCCCceeeeeeCCH
Q 001667 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRN------PDGKEVRYPVLLTP 252 (1034)
Q Consensus 182 sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG---~~~vhAe~RKSPvvDG~vrrN------~hgke~r~~v~Lt~ 252 (1034)
..+-+...|.|||| .|.++-|-++| ..+...+....+ ++.+.-+ ........|..|++
T Consensus 65 ---------~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~~--~~~~d~~~Ky~~~~~~~~~~~pa~l~~ 131 (203)
T PF07478_consen 65 ---------AFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVFP--SEFYDYEAKYQPADSETEYIIPADLSE 131 (203)
T ss_dssp ---------HTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEES--SSEEEHHHHHSGCCSCEEEESS-SS-H
T ss_pred ---------HhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEcC--CCceehhheeccCCCceEEEecCCCCH
Confidence 12346678999999 89999999999 666666666664 3443321 13345555667776
Q ss_pred H----HHHHHHHHHHHhCC-eeeeEeeeee-CCCeEEEeec---Cce
Q 001667 253 N----EKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVN---GWS 290 (1034)
Q Consensus 253 ~----Ek~iA~k~~~afgq-~VCGfDLLRs-~g~s~V~DVN---GwS 290 (1034)
+ =+++|.++.+++|. .+|=||+.=. +|.+||+||| |++
T Consensus 132 ~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~PGlt 178 (203)
T PF07478_consen 132 ELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIPGLT 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-G-S
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCccccc
Confidence 4 35789999999997 7899998755 7889999999 664
No 66
>PLN02735 carbamoyl-phosphate synthase
Probab=98.21 E-value=4.5e-06 Score=106.29 Aligned_cols=201 Identities=13% Similarity=0.118 Sum_probs=126.5
Q ss_pred CCcCeeeccccCCCchHHHH-----HHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccc
Q 001667 55 PICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDY 128 (1034)
Q Consensus 55 P~~D~lIsf~s~gfpl~kai-----~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~ 128 (1034)
-.+|++|+-++...++.=++ .-++..+ |+.-++..+..+..||...-++|.++|||+|++..+....
T Consensus 97 e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~e------- 169 (1102)
T PLN02735 97 ERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLD------- 169 (1102)
T ss_pred hCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCHH-------
Confidence 36899999887666664333 2356666 6888999999999999999999999999999998886510
Q ss_pred ccccCCeEE-EcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC
Q 001667 129 FIEEEDFVE-VHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT 206 (1034)
Q Consensus 129 ~~e~~d~i~-v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~ 206 (1034)
+..+.+. +++ -|+|+||..|. ..+++|-+... -.+..++..- ....+..+|+||||.-
T Consensus 170 --ea~~~~~~iG~----yPvVVKP~~~~GG~Gv~iv~n~e---EL~~a~~~a~-----------~~s~~~~VLVEe~I~G 229 (1102)
T PLN02735 170 --ECFEIAEDIGE----FPLIIRPAFTLGGTGGGIAYNKE---EFETICKAGL-----------AASITSQVLVEKSLLG 229 (1102)
T ss_pred --HHHHHHHHhCC----CCEEEEeCCCCCCCceEEECCHH---HHHHHHHHHH-----------hcCCCCeEEEEEecCC
Confidence 1112221 332 69999999853 23333332211 1111221110 1123567899999963
Q ss_pred CCeeeEEEEECC---ce--EEEeeccCCCCCCeeeecCCCCcee--eee-eCCHHHH----HHHHHHHHHhCC--eeeeE
Q 001667 207 GGTDVKVYTVGP---EY--AHAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNEK----QMAREVCIAFRQ--AVCGF 272 (1034)
Q Consensus 207 ~G~DVKvytVG~---~~--vhAe~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~Ek----~iA~k~~~afgq--~VCGf 272 (1034)
..-+-|=+++. +. +-.+.+..| .| .|.+... .|. .|++++. .+|.+|++++|. -+|.+
T Consensus 230 -~kE~ev~Vl~D~~g~~i~v~~ie~~dp--~g-----vh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nV 301 (1102)
T PLN02735 230 -WKEYELEVMRDLADNVVIICSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNV 301 (1102)
T ss_pred -CeEEEEEEEEcCCCCEEEEeeEEEEcC--Cc-----cccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEE
Confidence 23455555542 22 223444444 23 2434432 244 4787554 458999999997 58999
Q ss_pred eeeee--CCCeEEEeec-Cce
Q 001667 273 DLLRC--EGRSYVCDVN-GWS 290 (1034)
Q Consensus 273 DLLRs--~g~s~V~DVN-GwS 290 (1034)
|+.-. +|..||+||| ..|
T Consensus 302 qf~l~~~~g~~~ViEVNPR~s 322 (1102)
T PLN02735 302 QFAVNPVDGEVMIIEMNPRVS 322 (1102)
T ss_pred EEEEECCCCcEEEEEecCCCC
Confidence 99865 5789999999 455
No 67
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=8.6e-06 Score=91.13 Aligned_cols=189 Identities=18% Similarity=0.232 Sum_probs=135.2
Q ss_pred HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEE
Q 001667 71 EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVE 149 (1034)
Q Consensus 71 ~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVe 149 (1034)
..+..|++..+ ||+...+.+=...-|+-.+-++++..|+|++.++..+++... + +..+.+.. .+.-|+++
T Consensus 77 g~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~-~----~~~e~~~~----~l~~p~~V 147 (317)
T COG1181 77 GTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYS-S----VIVEEVEE----GLGFPLFV 147 (317)
T ss_pred chHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccch-h----HHHHHhhc----ccCCCEEE
Confidence 47788999998 999999999999999999999999999999999999985311 0 00111222 23579999
Q ss_pred eeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCC
Q 001667 150 KPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSP 229 (1034)
Q Consensus 150 Kpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSP 229 (1034)
||...- --+.+.-.++.|-|- +..+- ..+.+...+.|+|+. |..|.|=+.|... +++.-++
T Consensus 148 kp~~~g-SSvg~~~v~~~~d~~-----------~~~e~---a~~~d~~vl~e~~~~--~rei~v~vl~~~~--~~~~l~~ 208 (317)
T COG1181 148 KPAREG-SSVGRSPVNVEGDLQ-----------SALEL---AFKYDRDVLREQGIT--GREIEVGVLGNDY--EEQALPL 208 (317)
T ss_pred EcCCcc-ceeeEEEeeeccchH-----------HHHHH---HHHhCCceeeccCCC--cceEEEEecCCcc--cceecCc
Confidence 998753 234444444444443 22221 456788899999999 9999999999866 2222221
Q ss_pred --C-CCC-ee----eecCCCCceee--eeeCCH----HHHHHHHHHHHHhC-CeeeeEeeeeeC--CCeEEEeec
Q 001667 230 --V-VDG-VV----MRNPDGKEVRY--PVLLTP----NEKQMAREVCIAFR-QAVCGFDLLRCE--GRSYVCDVN 287 (1034)
Q Consensus 230 --v-vDG-~v----rrN~hgke~r~--~v~Lt~----~Ek~iA~k~~~afg-q~VCGfDLLRs~--g~s~V~DVN 287 (1034)
+ .+| .| ..|+++++..+ |-.||+ +=+++|.+|.+|+| ..+||+|++-.. |..|++|||
T Consensus 209 ~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvN 283 (317)
T COG1181 209 GEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVN 283 (317)
T ss_pred eEEecCCCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEe
Confidence 0 132 33 26788444333 333676 45789999999999 999999999888 899999999
No 68
>PLN02735 carbamoyl-phosphate synthase
Probab=98.16 E-value=3.5e-06 Score=107.18 Aligned_cols=197 Identities=13% Similarity=0.217 Sum_probs=121.1
Q ss_pred CcCeeeccccCCCchHHH---HHHHHHc----------CCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCC
Q 001667 56 ICDCLIAFYSSGYPLEKA---ESYATLR----------KPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVP 122 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~ka---i~y~~lr----------~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p 122 (1034)
.+|++|+-||...|+.-| .+++... =+++..+.++..+..||.+.-++|++.|||+|++..+....
T Consensus 649 ~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~e- 727 (1102)
T PLN02735 649 RPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEA- 727 (1102)
T ss_pred CCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCHH-
Confidence 379999999987776322 2233322 24678899999999999999999999999999998775510
Q ss_pred CcccccccccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEe
Q 001667 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYE 201 (1034)
Q Consensus 123 ~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyE 201 (1034)
+....+. .++.|+|+||..|- ..++.|-+...+ ....++.. . ....++.+|+|
T Consensus 728 --------ea~~~a~----~iGyPvvVKP~~g~gG~G~~iV~~~ee---L~~al~~a---~--------~~~~~~~vlVE 781 (1102)
T PLN02735 728 --------DALAIAK----RIGYPVVVRPSYVLGGRAMEIVYSDDK---LKTYLETA---V--------EVDPERPVLVD 781 (1102)
T ss_pred --------HHHHHHH----hcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHH---H--------HhcCCCCEEEE
Confidence 1111111 23579999999974 222332222110 11111111 0 01134579999
Q ss_pred eccCCCCeeeEEEEECC---ceEE--EeeccCCCCCCeeeecCCCCceeeee---eCCHHH----HHHHHHHHHHhCC-e
Q 001667 202 EFMPTGGTDVKVYTVGP---EYAH--AEARKSPVVDGVVMRNPDGKEVRYPV---LLTPNE----KQMAREVCIAFRQ-A 268 (1034)
Q Consensus 202 EFi~~~G~DVKvytVG~---~~vh--Ae~RKSPvvDG~vrrN~hgke~r~~v---~Lt~~E----k~iA~k~~~afgq-~ 268 (1034)
+||. +|.-+=|-+++. +++. .+.+.- +...|-++....+ .|+++. +++|.++++++|. .
T Consensus 782 efI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G 853 (1102)
T PLN02735 782 KYLS-DATEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCG 853 (1102)
T ss_pred EecC-CcEEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 9995 456666655553 2221 111111 1223545544333 577655 4678999999985 4
Q ss_pred eeeEeeeee-CCCeEEEeec
Q 001667 269 VCGFDLLRC-EGRSYVCDVN 287 (1034)
Q Consensus 269 VCGfDLLRs-~g~s~V~DVN 287 (1034)
++.+|++-. +|++||+|||
T Consensus 854 ~~~vqf~v~~dg~~yviEiN 873 (1102)
T PLN02735 854 LMNCQYAITPSGEVYIIEAN 873 (1102)
T ss_pred eeeEEEEEcCCCcEEEEEEe
Confidence 677999874 6889999999
No 69
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.13 E-value=1.2e-05 Score=87.24 Aligned_cols=166 Identities=22% Similarity=0.234 Sum_probs=124.6
Q ss_pred CcCe--eeccccCC--Cch-HHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccc
Q 001667 56 ICDC--LIAFYSSG--YPL-EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (1034)
Q Consensus 56 ~~D~--lIsf~s~g--fpl-~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~ 130 (1034)
.||+ +|+--++| +.| ..+-+|++..++ +..+.++.-|+|++|..|... +++|.|...-.
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~~~nLG~----S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~~----------- 136 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEYVENLGC----SPRAIRVAADKRLTYKALRDA-VKQPPTREWAE----------- 136 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHHhHhhCC----CHHHHhHhhhHHHHHHHHhhh-ccCCCcccccc-----------
Confidence 4554 34444444 334 357778888776 458999999999999999999 99999874211
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC----
Q 001667 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---- 206 (1034)
Q Consensus 131 e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~---- 206 (1034)
.. +-+|+||.+|. +|.|.. |- .=. .++ .|-||||+-
T Consensus 137 -------~~-----~k~ViKp~dgC-----------gge~i~--~~-------~~~-------pd~-~i~qEfIeG~~lS 176 (307)
T COG1821 137 -------EP-----KKYVIKPADGC-----------GGEGIL--FG-------RDF-------PDI-EIAQEFIEGEHLS 176 (307)
T ss_pred -------CC-----ceEEecccccC-----------Ccceee--cc-------CCC-------cch-hhHHHhcCCcceE
Confidence 12 46999999998 666652 21 001 123 788999874
Q ss_pred ----CCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhC-C-eeeeEeeeeeCCC
Q 001667 207 ----GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-Q-AVCGFDLLRCEGR 280 (1034)
Q Consensus 207 ----~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afg-q-~VCGfDLLRs~g~ 280 (1034)
.|+++.+.+|..+++.- +..+.--.|+..++..+|+.+-.++|+++.+-++ + --.||||+=+ +.
T Consensus 177 VSL~~GEkv~pLsvNrQfi~~---------~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~ 246 (307)
T COG1821 177 VSLSVGEKVLPLSVNRQFIIF---------AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DE 246 (307)
T ss_pred EEEecCCccccceechhhhhh---------ccceeeeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CC
Confidence 58888888887776543 4556667899999999999999999999999887 3 4679999999 99
Q ss_pred eEEEeec
Q 001667 281 SYVCDVN 287 (1034)
Q Consensus 281 s~V~DVN 287 (1034)
|||+|||
T Consensus 247 pYvIEIN 253 (307)
T COG1821 247 PYVIEIN 253 (307)
T ss_pred cEEEEec
Confidence 9999999
No 70
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.12 E-value=9.4e-06 Score=93.78 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=112.6
Q ss_pred cCeeeccccCCCchHH-HHHHHHHcCCccc-CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001667 57 CDCLIAFYSSGYPLEK-AESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl~k-ai~y~~lr~p~~i-Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 134 (1034)
+|++|+... -|+.. +...++..+..++ -+..+-.+.+||..+-++|.++|||+|++..++.. .+..+
T Consensus 69 iD~Vv~g~E--~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~---------~ea~~ 137 (426)
T PRK13789 69 FDLIVVGPE--DPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEY---------SSSLS 137 (426)
T ss_pred CCEEEECCc--hHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCH---------HHHHH
Confidence 677775332 34433 3344566664332 22334457789999999999999999998877651 12222
Q ss_pred eEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc--ccc-ccccceEEeeccCCCCeee
Q 001667 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRV-RREGSYIYEEFMPTGGTDV 211 (1034)
Q Consensus 135 ~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~--~~~-r~~gsyIyEEFi~~~G~DV 211 (1034)
++. .+..|+|+||..+. .|.|+. +.+........+..-. ..+ ..+..+|.||||. |.-+
T Consensus 138 ~~~----~~~~PvVVKp~~~~-----------~gkGV~-vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~--G~E~ 199 (426)
T PRK13789 138 YLE----SEMLPIVIKADGLA-----------AGKGVT-VATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME--GQEA 199 (426)
T ss_pred HHH----hcCCCEEEEeCCCC-----------CCCcEE-EECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC--CeEE
Confidence 332 12369999999764 444442 2221111111111000 011 1234799999997 4444
Q ss_pred EEEEE--CCceEE---EeeccCCCCCCeeeecCCCCceeeeee-CCHHH-----HHHHHHHHHHh---C---CeeeeEee
Q 001667 212 KVYTV--GPEYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNE-----KQMAREVCIAF---R---QAVCGFDL 274 (1034)
Q Consensus 212 KvytV--G~~~vh---Ae~RKSPvvDG~vrrN~hgke~r~~v~-Lt~~E-----k~iA~k~~~af---g---q~VCGfDL 274 (1034)
=|.++ |..+.. +...| ...||+-.-|+.|=+.-.|.. ++++. ++|+.++.+++ | .-|..+|+
T Consensus 200 Sv~~~~dg~~~~~lp~~~d~k-~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~ 278 (426)
T PRK13789 200 SIFAISDGDSYFLLPAAQDHK-RAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGL 278 (426)
T ss_pred EEEEEECCCEEEEccceEecc-cccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 44443 333221 22112 224677666777777666765 46632 23455566555 4 45667787
Q ss_pred eeeCCC-eEEEeecC
Q 001667 275 LRCEGR-SYVCDVNG 288 (1034)
Q Consensus 275 LRs~g~-s~V~DVNG 288 (1034)
.=+.+| +||+|+|-
T Consensus 279 ~it~~g~~~vlE~n~ 293 (426)
T PRK13789 279 MISPEGEPKVVEFNC 293 (426)
T ss_pred EEcCCCCEEEEEEec
Confidence 777655 99999994
No 71
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.12 E-value=7.8e-06 Score=103.74 Aligned_cols=196 Identities=18% Similarity=0.201 Sum_probs=119.3
Q ss_pred CcCeeeccccCCCchHHH-----HHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001667 56 ICDCLIAFYSSGYPLEKA-----ESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~ka-----i~y~~lr~p-~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~ 129 (1034)
.+|++++.++...++.-+ ..-++..+. ++-.+.++..+.+||....+.|.++|||+|++..+....
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~-------- 152 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVE-------- 152 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCHH--------
Confidence 579999988755555322 234666764 566889999999999999999999999999998886521
Q ss_pred cccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccc--cccceEEeeccCC
Q 001667 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVR--REGSYIYEEFMPT 206 (1034)
Q Consensus 130 ~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r--~~gsyIyEEFi~~ 206 (1034)
+..+... .++-|+|+||..|- .|.|+. + +.|.. ++..-+. ..+ ..+.+|.||||+-
T Consensus 153 -e~~~~~~----~igyPvIVKP~~g~-----------gg~Gv~-i---v~~~e-eL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 153 -EALAAAK----EIGYPVIVRPAFTL-----------GGTGGG-I---AYNRE-ELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred -HHHHHHH----HhCCCeEEECCCCC-----------CCCCeE-E---ECCHH-HHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 1111111 23469999999875 344442 1 11111 1110000 011 1257899999974
Q ss_pred -CCeeeEEEEEC-CceE--EEeeccCCCCCCeeeecCCCCce--eeee-eCCHHHH----HHHHHHHHHhCCe-eeeEee
Q 001667 207 -GGTDVKVYTVG-PEYA--HAEARKSPVVDGVVMRNPDGKEV--RYPV-LLTPNEK----QMAREVCIAFRQA-VCGFDL 274 (1034)
Q Consensus 207 -~G~DVKvytVG-~~~v--hAe~RKSPvvDG~vrrN~hgke~--r~~v-~Lt~~Ek----~iA~k~~~afgq~-VCGfDL 274 (1034)
.=-.+-|+.-+ ++.+ ..+.+--| .| .|-+++ -.|. .|++++. ++|.++++++|.. +|.||+
T Consensus 212 ~~Eiev~v~rd~~g~~~~~~~~e~~~p--~g-----vh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef 284 (1050)
T TIGR01369 212 WKEIEYEVMRDSNDNCITVCNMENFDP--MG-----VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQF 284 (1050)
T ss_pred ceEEEEEEEEeCCCCEEEEeeceeccC--cc-----eecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEE
Confidence 11233333221 1222 22334344 22 232332 2344 3787654 5888999999985 788998
Q ss_pred eee--CCCeEEEeec
Q 001667 275 LRC--EGRSYVCDVN 287 (1034)
Q Consensus 275 LRs--~g~s~V~DVN 287 (1034)
.-. +|+.||+|||
T Consensus 285 ~l~~~~g~~~viEiN 299 (1050)
T TIGR01369 285 ALNPDSGRYYVIEVN 299 (1050)
T ss_pred EEECCCCcEEEEEee
Confidence 876 4679999999
No 72
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=97.93 E-value=2.4e-05 Score=100.53 Aligned_cols=202 Identities=16% Similarity=0.153 Sum_probs=115.3
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCc-EEEEeccCCCcccccccc
Q 001667 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIE 131 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~-~~~~~r~~p~~~~~~~~e 131 (1034)
.+|++|+-|+ |-- ....+.++..+ +|+-++.++..+++||....++|+++|||+|. +.++... + +
T Consensus 73 ~idaIiPG~g--flsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~--d-------e 141 (1201)
T TIGR02712 73 GAQAIHPGYG--FLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSL--D-------E 141 (1201)
T ss_pred CCCEEEeCCc--ccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCH--H-------H
Confidence 4678887663 321 23456677777 56778899999999999999999999999855 5444331 0 1
Q ss_pred cCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCee
Q 001667 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (1034)
Q Consensus 132 ~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~D 210 (1034)
..+.+. .++.|+|+||..|. -.++.+..... -....|+.+.+.+..+ + .+..+|.||||. +|.-
T Consensus 142 a~~~a~----~igyPvVVKP~~ggGG~GV~iv~~~e---EL~~a~~~~~~~~~~~------f-~~~~vlVEefI~-g~~e 206 (1201)
T TIGR02712 142 ALEAAK----EIGYPVMLKSTAGGGGIGMQKCDSAA---ELAEAFETVKRLGESF------F-GDAGVFLERFVE-NARH 206 (1201)
T ss_pred HHHHHH----hcCCeEEEEECCCCCCCCEEEECCHH---HHHHHHHHHHHHHHHh------c-CCCcEEEEecCC-CCEE
Confidence 111111 23479999999985 12222222111 1222333331111000 0 134589999996 3456
Q ss_pred eEEEEECC---ceEEEeeccCCCCCCeee-ecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCe-eeeEeeeeeC--C
Q 001667 211 VKVYTVGP---EYAHAEARKSPVVDGVVM-RNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE--G 279 (1034)
Q Consensus 211 VKvytVG~---~~vhAe~RKSPvvDG~vr-rN~hgke~r~~v~Lt~----~Ek~iA~k~~~afgq~-VCGfDLLRs~--g 279 (1034)
+-|.++|. .+++--.|-. .+. +|..--+..-+..|++ +=.++|.++++++|.. ++.+|++-.. +
T Consensus 207 veV~v~~Dg~g~vv~lg~rd~-----s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g 281 (1201)
T TIGR02712 207 VEVQIFGDGKGKVVALGERDC-----SLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARD 281 (1201)
T ss_pred EEEEEEECCCCeEEEeeEEEe-----eeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCC
Confidence 76766652 3444322221 111 1111111111113444 3345788889998875 6779999764 7
Q ss_pred CeEEEeecC
Q 001667 280 RSYVCDVNG 288 (1034)
Q Consensus 280 ~s~V~DVNG 288 (1034)
++||+|||.
T Consensus 282 ~~y~lEVNp 290 (1201)
T TIGR02712 282 EFYFLEVNT 290 (1201)
T ss_pred CEEEEEEEC
Confidence 899999995
No 73
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.93 E-value=3.1e-05 Score=98.65 Aligned_cols=197 Identities=18% Similarity=0.191 Sum_probs=116.8
Q ss_pred CcCeeeccccCCCchHHHH-----HHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001667 56 ICDCLIAFYSSGYPLEKAE-----SYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai-----~y~~lr~p-~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~ 129 (1034)
.+|++|+.++....+.-++ ..++..+. +.-.+..+..+.+||....++|.++|||+|++..+....
T Consensus 82 ~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~e-------- 153 (1068)
T PRK12815 82 KPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVE-------- 153 (1068)
T ss_pred CcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCHH--------
Confidence 5899999877444453333 14566664 455788999999999999999999999999999887621
Q ss_pred cccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCC
Q 001667 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (1034)
Q Consensus 130 ~e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G 208 (1034)
+..+.+. .++-|+|+||..|- ..++++..... -...+++..- .....+.+|.||||+-.
T Consensus 154 -e~~~~~~----~igyPvVVKP~~g~gG~Gv~iv~~~e---EL~~a~~~~~-----------~~s~~~~vLVEe~I~G~- 213 (1068)
T PRK12815 154 -EALAFAE----KIGFPIIVRPAYTLGGTGGGIAENLE---ELEQLFKQGL-----------QASPIHQCLLEESIAGW- 213 (1068)
T ss_pred -HHHHHHH----HcCCCEEEEECcCCCCCceEEECCHH---HHHHHHHHHH-----------hcCCCCeEEEEEccCCC-
Confidence 1112221 13369999999874 12222222111 0111121110 00123579999999631
Q ss_pred eeeEEEEECC---ceE--EEeeccCCCCCCeeeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhCC-eeeeEeee
Q 001667 209 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQ-AVCGFDLL 275 (1034)
Q Consensus 209 ~DVKvytVG~---~~v--hAe~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~E----k~iA~k~~~afgq-~VCGfDLL 275 (1034)
..+=+-++.. +++ .++.+-.| .| .|.|... .|. .|++++ +++|.++++++|. .+|.||+.
T Consensus 214 ~E~sv~v~rD~~g~~~~~~~~e~~~p--~g-----i~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~ 286 (1068)
T PRK12815 214 KEIEYEVMRDRNGNCITVCNMENIDP--VG-----IHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFA 286 (1068)
T ss_pred eEEEEEEEEcCCCCEEEEEeceeccc--cc-----ccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 2333333321 222 22223233 22 2222221 233 477764 4688899999998 47889987
Q ss_pred ee--CCCeEEEeec
Q 001667 276 RC--EGRSYVCDVN 287 (1034)
Q Consensus 276 Rs--~g~s~V~DVN 287 (1034)
-. +|++||+|||
T Consensus 287 l~~~~g~~~ViEIN 300 (1068)
T PRK12815 287 LDPKSKQYYLIEVN 300 (1068)
T ss_pred EECCCCcEEEEEEe
Confidence 65 3679999999
No 74
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.86 E-value=5.5e-05 Score=89.07 Aligned_cols=202 Identities=16% Similarity=0.097 Sum_probs=116.8
Q ss_pred cCeeeccccCCCchH-HHHHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCC-cEEEEeccCCCcccccccccC
Q 001667 57 CDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVP-RYALVNREVPYQELDYFIEEE 133 (1034)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P-~~~~~~r~~p~~~~~~~~e~~ 133 (1034)
+|++|+...+ |+. .+-..++..+. +.-++..+-.+.+||...-++|+++|||+| .+..++.. .+..
T Consensus 70 id~Vi~g~E~--~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~---------~ea~ 138 (486)
T PRK05784 70 PDLVVIGPEE--PLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDV---------EEAA 138 (486)
T ss_pred CCEEEECCch--HHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCH---------HHHH
Confidence 6888875443 552 33345666664 445888888889999999999999999997 56555431 0222
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCC-Ccccc--------cC---Ccccc-ccccceEE
Q 001667 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGN-RSSEF--------HP---DVRRV-RREGSYIY 200 (1034)
Q Consensus 134 d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign-~sS~~--------~p---~~~~~-r~~gsyIy 200 (1034)
++++. + .|+|+||..+. .|.|+. +...... .++.+ +. ....+ ..+..+|.
T Consensus 139 ~~~~~----~-~PvVVKP~~~a-----------ggkGV~-iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlI 201 (486)
T PRK05784 139 KFIEY----G-GSVAIKPARQA-----------GGKGVK-VIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILV 201 (486)
T ss_pred HHHhh----c-CCEEEeeCCCC-----------CCCCEE-EECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEE
Confidence 23321 1 29999999986 566764 3322110 00000 00 00111 23567999
Q ss_pred eeccCCCCeeeEEEEECCceEE---EeeccCCCCCCeeeecCCCCceeee----ee-CCHHH----HHHHHHHHHHhCCe
Q 001667 201 EEFMPTGGTDVKVYTVGPEYAH---AEARKSPVVDGVVMRNPDGKEVRYP----VL-LTPNE----KQMAREVCIAFRQA 268 (1034)
Q Consensus 201 EEFi~~~G~DVKvytVG~~~vh---Ae~RKSPvvDG~vrrN~hgke~r~~----v~-Lt~~E----k~iA~k~~~afgq~ 268 (1034)
||||.-.=-.|=+++-|..+.. +..-| .+.||+.--|+.|=+.=.| +. +++++ .+++.++.++++..
T Consensus 202 EEfL~G~E~SV~al~dG~~~~~l~~~qd~k-~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~ 280 (486)
T PRK05784 202 EEKVDGVEYTLQVLTDGETVIPLPLAQDYP-HAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKE 280 (486)
T ss_pred EEccCCeEEEEEEEECCCeEEEeeeeEeec-ceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999842234445554544331 11111 1246666667766554333 22 34433 24577777777643
Q ss_pred -------eeeEeeeee-CCCeEEEeec
Q 001667 269 -------VCGFDLLRC-EGRSYVCDVN 287 (1034)
Q Consensus 269 -------VCGfDLLRs-~g~s~V~DVN 287 (1034)
++-+++.-+ .+||+|+|+|
T Consensus 281 ~g~~~~G~l~~elmlt~~~GP~vIE~n 307 (486)
T PRK05784 281 TGERYVGVISGQMMLTELWGPTVIEYY 307 (486)
T ss_pred cCCCcEEEEEEEEEEecCCCcEEEEEe
Confidence 445577778 9999999999
No 75
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.69 E-value=7.1e-05 Score=78.80 Aligned_cols=168 Identities=25% Similarity=0.364 Sum_probs=100.6
Q ss_pred CCcchhhHHhhHHHHH----HH---HHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcc
Q 001667 86 NELEPQHLLHDRRKVY----EQ---LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 158 (1034)
Q Consensus 86 Ndl~~q~~l~DR~~vl----qi---L~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHn 158 (1034)
|+|.+.+.+.||-=++ +| |-....|+=.-.+... ..+.+.-- ..|+|+|-=.+-
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypn------------h~em~s~~----~fPvVvKvG~~h--- 61 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPN------------HREMLSAP----RFPVVVKVGHAH--- 61 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESS------------GGGGCS-S----SSSEEEEESS-S---
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCC------------hhhhccCC----CCCEEEEEcccc---
Confidence 7888888888883222 22 2233444322222221 23333221 369999976555
Q ss_pred eEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccce-EEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeee
Q 001667 159 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 236 (1034)
Q Consensus 159 i~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsy-IyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vr 236 (1034)
.|-|-. |+-|+.. |. |+. .+....+| -.|-||.. --|||+--+|++| -|+.|+|. .|--.
T Consensus 62 --------~G~GKv----kv~n~~~-~q-Di~sll~~~~~Y~T~EPfId~-kyDirvqkIG~~y-kA~~R~si--s~nWK 123 (203)
T PF02750_consen 62 --------AGMGKV----KVDNQQD-FQ-DIASLLAITKDYATTEPFIDA-KYDIRVQKIGNNY-KAYMRTSI--SGNWK 123 (203)
T ss_dssp --------TTTTEE----EE-SHHH-HH-HHHHHHHHHTS-EEEEE---E-EEEEEEEEETTEE-EEEEEEES--SSTSS
T ss_pred --------CceeEE----EEccHHH-HH-HHHHHHHhcCceEEeeccccc-eeEEEEEEEcCeE-EEEEEccc--ccccc
Confidence 566642 4444432 22 111 22333344 45667733 4799999999998 89999994 77777
Q ss_pred ecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCeeeeEeeeee-CCCeEEEeecCcee
Q 001667 237 RNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRC-EGRSYVCDVNGWSF 291 (1034)
Q Consensus 237 rN~hgke~r~~v~Lt~~Ek~iA~k~~~af-gq~VCGfDLLRs-~g~s~V~DVNGwSF 291 (1034)
.|+ |-.+-..|.+|+..|...-.+++.| |++|||+|.|-+ .|+=|++|||+=|+
T Consensus 124 ~N~-gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m 179 (203)
T PF02750_consen 124 ANT-GSAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSM 179 (203)
T ss_dssp TTS-SSEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT-
T ss_pred ccc-cchheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcc
Confidence 776 6667778999999999999999999 999999999999 58899999997543
No 76
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=97.64 E-value=0.00011 Score=79.89 Aligned_cols=188 Identities=20% Similarity=0.275 Sum_probs=113.7
Q ss_pred cCCcccCCcchhhHHhhHHHHHHHHHhCC-CC--CCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccC
Q 001667 80 RKPFLVNELEPQHLLHDRRKVYEQLEKYG-IP--VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (1034)
Q Consensus 80 r~p~~iNdl~~q~~l~DR~~vlqiL~~~g-Ip--~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~ged 156 (1034)
++....|. -+.|+|.+|+.|.+.. +. +|.|...... .+...++.-- +-+.+||..|.
T Consensus 7 ~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~---------~~l~~~L~~y-----~~vylKP~~Gs- 66 (262)
T PF14398_consen 7 KGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSF---------EDLREMLNKY-----KSVYLKPDNGS- 66 (262)
T ss_pred CCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCH---------HHHHHHHHHC-----CEEEEEeCCCC-
Confidence 44455554 3479999999999863 44 7777766541 0223333323 35889999997
Q ss_pred cceEEEeccCCCChHHHHHhhhCC-Cccccc------CCccccccccceEEeeccCC---CC--eeeEEEEEC--C---c
Q 001667 157 HSIMIYYPSSAGGGMKELFRKVGN-RSSEFH------PDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVG--P---E 219 (1034)
Q Consensus 157 Hni~IYyp~~~GgG~~~Lfrkign-~sS~~~------p~~~~~r~~gsyIyEEFi~~---~G--~DVKvytVG--~---~ 219 (1034)
.+..|+.=...++|..--++.-+. ....|. .-+...-....||+|+.|+- +| -|+||++-= . .
T Consensus 67 ~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~ 146 (262)
T PF14398_consen 67 KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQ 146 (262)
T ss_pred CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEE
Confidence 333333322222222100111111 000111 00111224669999999976 56 899999982 2 5
Q ss_pred eEEEeeccCCCCCCeeeecCCCCceeeeee--CCH---------H----HHHHHHHHHHHhCC--eeeeEeeeee-CCCe
Q 001667 220 YAHAEARKSPVVDGVVMRNPDGKEVRYPVL--LTP---------N----EKQMAREVCIAFRQ--AVCGFDLLRC-EGRS 281 (1034)
Q Consensus 220 ~vhAe~RKSPvvDG~vrrN~hgke~r~~v~--Lt~---------~----Ek~iA~k~~~afgq--~VCGfDLLRs-~g~s 281 (1034)
+....+|.++ .|.+-.|.++|+...++. |+. + =..+|..+.+.||- .-.|+||-=. +|+.
T Consensus 147 vtg~~~Rva~--~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~i 224 (262)
T PF14398_consen 147 VTGIVARVAK--PGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKI 224 (262)
T ss_pred EEEEEEEEcC--CCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCE
Confidence 6778999997 999999999887765541 111 1 12344555566774 7789999655 8999
Q ss_pred EEEeecCc
Q 001667 282 YVCDVNGW 289 (1034)
Q Consensus 282 ~V~DVNGw 289 (1034)
.++|||.=
T Consensus 225 WliEvN~k 232 (262)
T PF14398_consen 225 WLIEVNSK 232 (262)
T ss_pred EEEEEeCC
Confidence 99999963
No 77
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.21 E-value=0.0093 Score=68.34 Aligned_cols=178 Identities=19% Similarity=0.211 Sum_probs=102.0
Q ss_pred HcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcc
Q 001667 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 158 (1034)
Q Consensus 79 lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHn 158 (1034)
+.-|+.- +..+-...+||.+-.+.|.++|||+|+++ .. + ++ ++ .|+|+||..|.+ +
T Consensus 107 ~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~~--~~--~----------~~---i~-----~PvIVKp~~g~g-g 162 (358)
T PRK13278 107 FKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRKY--ES--P----------ED---ID-----RPVIVKLPGAKG-G 162 (358)
T ss_pred CCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCEe--CC--H----------HH---cC-----CCEEEEeCCCCC-C
Confidence 4344323 55577888999999999999999999962 22 1 11 12 599999988752 2
Q ss_pred eEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEE---CCceEEEeeccCCC-CCCe
Q 001667 159 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV---GPEYAHAEARKSPV-VDGV 234 (1034)
Q Consensus 159 i~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytV---G~~~vhAe~RKSPv-vDG~ 234 (1034)
-.++...+.. -....++.+-++. .+ .....+|.||||.-.--.+=+|+. |.-...++.|+=-. .||.
T Consensus 163 kGv~i~~s~~-El~~~~~~l~~~~-~~-------~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~ 233 (358)
T PRK13278 163 RGYFIAKSPE-EFKEKIDKLIERG-LI-------TEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGL 233 (358)
T ss_pred CCeEEeCCHH-HHHHHHHHHHhcc-cc-------CCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccce
Confidence 3333333322 1223333321111 11 126789999999742233335654 66566666665433 5676
Q ss_pred eee--c---CCCCceeeeee------CC----HHHHHHHHHHHHH----h-CCeee--eEeeeee-CCCeEEEeecCc
Q 001667 235 VMR--N---PDGKEVRYPVL------LT----PNEKQMAREVCIA----F-RQAVC--GFDLLRC-EGRSYVCDVNGW 289 (1034)
Q Consensus 235 vrr--N---~hgke~r~~v~------Lt----~~Ek~iA~k~~~a----f-gq~VC--GfDLLRs-~g~s~V~DVNGw 289 (1034)
||- . ..+.+-.|++. +. ++=..++.+++++ + +..+| .+|.+.. ++..+|+|||+=
T Consensus 234 ~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R 311 (358)
T PRK13278 234 VRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISAR 311 (358)
T ss_pred eeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCc
Confidence 762 1 12233333333 22 3444566666666 5 55555 4566776 456799999863
No 78
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=96.93 E-value=0.0029 Score=71.38 Aligned_cols=154 Identities=24% Similarity=0.376 Sum_probs=99.8
Q ss_pred cccCCcc-hhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEE
Q 001667 83 FLVNELE-PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMI 161 (1034)
Q Consensus 83 ~~iNdl~-~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~I 161 (1034)
+.=|+-. .-..+-.|.+-|+.|...|.|.|.+--+ +.+..+ -+|.|+||++|.
T Consensus 107 v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~----------------e~~~~g----ekt~IlKPv~Ga------ 160 (389)
T COG2232 107 VAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKI----------------EPLEEG----EKTLILKPVSGA------ 160 (389)
T ss_pred cccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhh----------------hhhhhc----ceeeEEeeccCC------
Confidence 3345555 6677788899999999999998754211 112223 279999999995
Q ss_pred EeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC---------CCeeeEEEEECCceEEEeeccCCCCC
Q 001667 162 YYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---------GGTDVKVYTVGPEYAHAEARKSPVVD 232 (1034)
Q Consensus 162 Yyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~---------~G~DVKvytVG~~~vhAe~RKSPvvD 232 (1034)
| |. ++.+ .++.+. . -.-+|.||||+- +|.|....+|..+++- --|-. -
T Consensus 161 ------G-G~---~el~-----~~~Ee~-~---~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~-~~~~~---~ 217 (389)
T COG2232 161 ------G-GL---VELV-----KFDEED-P---PPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIID-GLRGE---Y 217 (389)
T ss_pred ------C-ce---eeec-----cccccc-C---CcceehhhhcCCceeEEEEEecCcceEEEEEeeeeec-ccccc---c
Confidence 3 42 2322 121111 0 177899999972 6778888888777664 00100 0
Q ss_pred CeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCe-eeeEeeeeeCCCeEEEeec
Q 001667 233 GVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVN 287 (1034)
Q Consensus 233 G~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLRs~g~s~V~DVN 287 (1034)
+-|+ -.|-=+-+++....+=..+|..+..-||+. --|||+|=...||||+|||
T Consensus 218 ~~f~--Y~GNlTP~~~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~gpyViEVN 271 (389)
T COG2232 218 SQFV--YKGNLTPFPYEEVEEAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVN 271 (389)
T ss_pred ccce--eccCcCCCcchhhHHHHHHHHHHHHHhccccccccceEeecCCcEEEEec
Confidence 1011 013344455555555577999999999985 5799999999999999999
No 79
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=96.83 E-value=0.0023 Score=75.15 Aligned_cols=200 Identities=17% Similarity=0.173 Sum_probs=125.9
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcCCcccCCcc--hhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccc
Q 001667 56 ICDCLIAFYSSGYPL--EKAESYATLRKPFLVNELE--PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 131 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p~~iNdl~--~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e 131 (1034)
.+|+++|.|+ |-- .+..+-++..+ ++..... ....+.||...=++++++|||+|.....-- . + ..+
T Consensus 74 gadai~pGyg--flsen~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~---~-~---~ee 143 (449)
T COG0439 74 GADAIHPGYG--FLSENAAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAV---A-D---NEE 143 (449)
T ss_pred CCceEcccch--hhhCCHHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCc---C-C---HHH
Confidence 5899999887 333 44555666666 5555444 456788999999999999999999872110 0 0 011
Q ss_pred cCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCC-C
Q 001667 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPT-G 207 (1034)
Q Consensus 132 ~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~~-~ 207 (1034)
...... .++-|+|+||..|- -|.|++ +.+....-...|..-.. ..--++.++.|+|+.. .
T Consensus 144 ~~~~a~----~iGyPVivKa~~Gg-----------Gg~G~r-~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~r 207 (449)
T COG0439 144 ALAIAE----EIGYPVIVKAAAGG-----------GGRGMR-VVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPR 207 (449)
T ss_pred HHHHHH----HcCCCEEEEECCCC-----------CcccEE-EECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCc
Confidence 222222 23379999999997 566763 55543222222221110 0113677999999976 4
Q ss_pred CeeeEEEEECC---ceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHH----HHHHHHHHhCCeeee-Eeeeee-C
Q 001667 208 GTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-E 278 (1034)
Q Consensus 208 G~DVKvytVG~---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~----iA~k~~~afgq~VCG-fDLLRs-~ 278 (1034)
- |=+-+.|+ .++|.-.|-.. .=||+-.=.|..-...++++-+. .|.+++++.|-.-|| |.+|=. +
T Consensus 208 h--ievqv~gD~~g~~i~l~eRdcs----iqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~ 281 (449)
T COG0439 208 H--IEVQVLGDGHGNVIHLGERDCS----IQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSN 281 (449)
T ss_pred e--EEEEEEEcCcccEEEEEeccCC----CcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Confidence 4 33444444 56888888742 34555555566655566655543 467888888878787 777877 5
Q ss_pred CCeEEEeec
Q 001667 279 GRSYVCDVN 287 (1034)
Q Consensus 279 g~s~V~DVN 287 (1034)
|++|++|+|
T Consensus 282 ~~~yfiEmN 290 (449)
T COG0439 282 GEFYFIEMN 290 (449)
T ss_pred CCEEEEEEe
Confidence 999999999
No 80
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=96.74 E-value=0.00022 Score=75.62 Aligned_cols=161 Identities=22% Similarity=0.326 Sum_probs=94.8
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHH
Q 001667 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (1034)
Q Consensus 96 DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lf 175 (1034)
||.++.+++.+.|||+|.....--+ +.++.+.+- ..++.|+++||..|- -|.|. +++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~----------~~eea~~~a-~~iGyPVliKas~gg-----------GG~gm-~iv 57 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPIS----------SVEEALEFA-EEIGYPVLIKASAGG-----------GGRGM-RIV 57 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBS----------SHHHHHHHH-HHH-SSEEEEETTSS-----------TTTSE-EEE
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCC----------CHHHHHHHH-HhcCCceEEeecccc-----------ccccc-ccc
Confidence 7899999999999999988755111 112222211 124579999999885 33343 222
Q ss_pred hhhCCCcccccCCccccc------cccceEEeeccCC-CCeeeEEEEECC-ceEEEeeccCCCCCCeeeecCCCC--cee
Q 001667 176 RKVGNRSSEFHPDVRRVR------REGSYIYEEFMPT-GGTDVKVYTVGP-EYAHAEARKSPVVDGVVMRNPDGK--EVR 245 (1034)
Q Consensus 176 rkign~sS~~~p~~~~~r------~~gsyIyEEFi~~-~G~DVKvytVG~-~~vhAe~RKSPvvDG~vrrN~hgk--e~r 245 (1034)
+....-.+.+.. ..+ -+..+++|+|+.. .--+|-|..=|. +++|.-.|.. ...| -+|+ ++.
T Consensus 58 ~~~~eL~~~~~~---~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~-----~~~~-hs~dsi~~~ 128 (211)
T PF02786_consen 58 HNEEELEEAFER---AQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGEREC-----SEQR-HSQDSIEEA 128 (211)
T ss_dssp SSHHHHHHHHHH---HHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEE-----EEEE-TTEEEEEEE
T ss_pred cchhhhhhhhhh---ccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeecc-----cccc-ccccceeEe
Confidence 222111111111 111 2788999999987 555665554433 4666666655 2223 2344 344
Q ss_pred eeeeCCHHHHH----HHHHHHHHhCC-eeeeEeeeee--CCCeEEEeecC
Q 001667 246 YPVLLTPNEKQ----MAREVCIAFRQ-AVCGFDLLRC--EGRSYVCDVNG 288 (1034)
Q Consensus 246 ~~v~Lt~~Ek~----iA~k~~~afgq-~VCGfDLLRs--~g~s~V~DVNG 288 (1034)
-+..||+++++ +|.++|+++|. .+|-|-+|-. ++..||+|||=
T Consensus 129 P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNp 178 (211)
T PF02786_consen 129 PAQTLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNP 178 (211)
T ss_dssp S-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEES
T ss_pred eccccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccC
Confidence 45679987754 78999999996 4788999998 79999999994
No 81
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=96.52 E-value=0.028 Score=64.69 Aligned_cols=163 Identities=18% Similarity=0.233 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCC--CChH-
Q 001667 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSA--GGGM- 171 (1034)
Q Consensus 95 ~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~--GgG~- 171 (1034)
+|++.-|++|.++||++|++.-. | + +++ .|+|+||..|. . |.|.
T Consensus 125 ~dKk~~yk~L~~aGI~~Pk~~~~----p-----------~--eId-----~PVIVKp~~as-----------G~~srG~f 171 (366)
T PRK13277 125 TGEKNYYWLLEKAGIPYPKLFKD----P-----------E--EID-----RPVIVKLPEAK-----------RRLERGFF 171 (366)
T ss_pred cCHHHHHHHHHHcCCCCceeecC----c-----------c--ccC-----ccEEEEECCCC-----------CccccCeE
Confidence 46788889999999999998841 1 1 234 59999999987 2 3333
Q ss_pred -----HHHHhhhCCCc--ccccCCccccccccceEEeeccCCCCeeeEEEEE--CC--ceEEEeeccCCCCCCeeeecCC
Q 001667 172 -----KELFRKVGNRS--SEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV--GP--EYAHAEARKSPVVDGVVMRNPD 240 (1034)
Q Consensus 172 -----~~Lfrkign~s--S~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytV--G~--~~vhAe~RKSPvvDG~vrrN~h 240 (1034)
..|.++....+ ..++ -....++++||||.-.--.+-+|.. -+ .++..-.|----+||.+|- ++
T Consensus 172 ~a~s~eEl~~~a~~l~~~g~I~-----~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~-pa 245 (366)
T PRK13277 172 TASSYEDFYEKSEELIKAGVID-----REDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRL-PA 245 (366)
T ss_pred eeCCHHHHHHHHHhhhhcCccc-----ccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeecccccccccccc-Ch
Confidence 11222210000 0110 0123567899999742233335544 33 3444554422227886662 21
Q ss_pred CC------cee------eeeeCC----HHHHHHHHHHHHHhCC-----eee--eEeeeeeC-CCeEEEeecCceecccch
Q 001667 241 GK------EVR------YPVLLT----PNEKQMAREVCIAFRQ-----AVC--GFDLLRCE-GRSYVCDVNGWSFVKNSY 296 (1034)
Q Consensus 241 gk------e~r------~~v~Lt----~~Ek~iA~k~~~afgq-----~VC--GfDLLRs~-g~s~V~DVNGwSFVK~n~ 296 (1034)
+. ..+ .|+.++ ++=.+++.+++++++. .++ .+|..-.. +..||+|||+ .|+-+.+
T Consensus 246 ~~ql~~~~~p~~vv~G~~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EInp-R~gGGtn 324 (366)
T PRK13277 246 PQQLKLNEEPRYIEVGHEPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAP-RIGGGTN 324 (366)
T ss_pred hhhhhcccCCceEEEcCccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEcC-CcCCCcc
Confidence 11 111 223333 3445677888899883 222 35555544 7899999984 3444333
Q ss_pred h
Q 001667 297 K 297 (1034)
Q Consensus 297 k 297 (1034)
-
T Consensus 325 l 325 (366)
T PRK13277 325 V 325 (366)
T ss_pred c
Confidence 3
No 82
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=96.05 E-value=0.03 Score=64.97 Aligned_cols=198 Identities=19% Similarity=0.201 Sum_probs=112.8
Q ss_pred CcCeeeccccCCCchHHHHHHHHH-----cC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001667 56 ICDCLIAFYSSGYPLEKAESYATL-----RK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (1034)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~l-----r~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~ 129 (1034)
+.|++++-+|-..+|.-+++--+. .+ +.+.++.++..+..||++..+.+.++|+|+| +.+++. .
T Consensus 70 ~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~---------~ 139 (400)
T COG0458 70 RPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHS---------V 139 (400)
T ss_pred CcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-cccccc---------H
Confidence 459999999999999555443332 13 4688999999999999999999999999999 323322 1
Q ss_pred cccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc-cccc--cccceEEeeccCC
Q 001667 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV-RRVR--REGSYIYEEFMPT 206 (1034)
Q Consensus 130 ~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~-~~~r--~~gsyIyEEFi~~ 206 (1034)
.+..+.+..-| -|.|+||--|. -|.|+. .++.. .++..-. ...+ .-...+.||||..
T Consensus 140 ~e~~~~~~~ig----~PvIVrP~~~l-----------GG~G~~-i~~n~----eel~~~~~~~l~~s~~~~vl~eesi~G 199 (400)
T COG0458 140 EEADEIADEIG----YPVIVKPSFGL-----------GGSGGG-IAYNE----EELEEIIEEGLRASPVEEVLIEESIIG 199 (400)
T ss_pred HHHhhhHhhcC----CCEEEecCcCC-----------CCCcee-EEeCH----HHHHHHHHhccccCccccceeeeeecC
Confidence 13344444333 79999999886 333542 22211 1111000 0111 1234567777765
Q ss_pred CCe--eeEEEEECCc--eEEEeeccCCCCCCeeeecCCCCceeee---eeCCHHHHHHH----HHHHHHhCCe-eeeEee
Q 001667 207 GGT--DVKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYP---VLLTPNEKQMA----REVCIAFRQA-VCGFDL 274 (1034)
Q Consensus 207 ~G~--DVKvytVG~~--~vhAe~RKSPvvDG~vrrN~hgke~r~~---v~Lt~~Ek~iA----~k~~~afgq~-VCGfDL 274 (1034)
..+ =+.+..--.+ ++-.|.+-=| .| .|-+...+. -.||..|-++. .++.+++|.. =|-|+.
T Consensus 200 ~ke~e~ev~rd~~~n~ivvc~men~dp--~g-----vhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~ 272 (400)
T COG0458 200 WKEFEYEVVRDGKDNCIVVCNMENLDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQF 272 (400)
T ss_pred ceEEEEEEEEeCCCCEEEEEeCCcccc--cc-----ccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeE
Confidence 221 1111111111 2233444433 22 343333322 24677666555 4777787765 233554
Q ss_pred eeeC--CCeEEEeec-Cce
Q 001667 275 LRCE--GRSYVCDVN-GWS 290 (1034)
Q Consensus 275 LRs~--g~s~V~DVN-GwS 290 (1034)
-=.. +..||+||| .+|
T Consensus 273 av~~~~~~~~viEvNpRvS 291 (400)
T COG0458 273 AVDPGGGELYVIEINPRVS 291 (400)
T ss_pred EEcCCCceEEEEEecCCcC
Confidence 3333 468999999 776
No 83
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=95.04 E-value=0.011 Score=62.66 Aligned_cols=164 Identities=21% Similarity=0.309 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCE-EEeeccc-cCcceEEEeccCC-CChHH
Q 001667 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPF-VEKPVHG-DDHSIMIYYPSSA-GGGMK 172 (1034)
Q Consensus 96 DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPf-VeKpv~g-edHni~IYyp~~~-GgG~~ 172 (1034)
||.-+=++++++||||+.+..... +.+...+|+-.+ .|. |+|+--- ...++.|.-.... -..++
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~---------~~~A~~~l~~~~----~p~~ViKadGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTD---------YEEALEYLEEQG----YPYVVIKADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESS---------HHHHHHHHHHHS----SSEEEEEESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECC---------HHHHHHHHHhcC----CCceEEccCCCCCCCEEEEeCCHHHHHHHHH
Confidence 466677899999999999888876 224455565333 477 9998432 2234444422211 11122
Q ss_pred HHHhhhCCCcccccCCccccc-cccceEEeeccCCCCeeeEEEEECCceEEEe-----eccCCCCCCeeeecCCCCceee
Q 001667 173 ELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNPDGKEVRY 246 (1034)
Q Consensus 173 ~Lfrkign~sS~~~p~~~~~r-~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe-----~RKSPvvDG~vrrN~hgke~r~ 246 (1034)
++|.. ..+. .+...|.|||+.-.=--+=|+|=|..|+.-- .|-. ||+-=-|+.|=+.=.
T Consensus 69 ~~~~~------------~~fg~~~~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~---dgd~GpnTGGMGa~s 133 (194)
T PF01071_consen 69 EIFVD------------RKFGDAGSKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF---DGDTGPNTGGMGAYS 133 (194)
T ss_dssp HHHTS------------STTCCCGSSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE---TTTEEEEESESEEEE
T ss_pred Hhccc------------cccCCCCCcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc---CCCCCCCCCCcccee
Confidence 22210 0222 4678999999975545566778888776432 2443 888888999887777
Q ss_pred eeeC-CHHH-----HHHHHHHHHHh---CCeeee---EeeeeeCCCeEEEeec
Q 001667 247 PVLL-TPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVN 287 (1034)
Q Consensus 247 ~v~L-t~~E-----k~iA~k~~~af---gq~VCG---fDLLRs~g~s~V~DVN 287 (1034)
|+.. |++. +.|...+.+++ |..-+| +.|.=+.+||+|+|-|
T Consensus 134 p~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~Gp~vlEfN 186 (194)
T PF01071_consen 134 PVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTEDGPKVLEFN 186 (194)
T ss_dssp STTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETTEEEEEEEE
T ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCCCcEEEEEe
Confidence 7755 5543 23444455555 445555 4666789999999998
No 84
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=92.67 E-value=2.4 Score=46.31 Aligned_cols=175 Identities=20% Similarity=0.246 Sum_probs=99.9
Q ss_pred chhhHHhhHHHHHHHHHhCC--CCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccC
Q 001667 89 EPQHLLHDRRKVYEQLEKYG--IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSS 166 (1034)
Q Consensus 89 ~~q~~l~DR~~vlqiL~~~g--Ip~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~ 166 (1034)
+.-..+-||..|-..+++.+ ..+|..+-+-.+ -+.|..+ .+..+||+||..|+. .++|+.-++
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~------------~~~i~~~--~Lp~~fViK~nhgsg-~~~i~~dk~ 77 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLLGVYDN------------PDDIDFD--SLPDKFVIKPNHGSG-SNIIVRDKS 77 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECceeecCCC------------hhhhhhh--cCCCCEEEEEecCCC-cEEEEeCCc
Confidence 33456789999999999886 344444433331 1223222 356799999999985 445555444
Q ss_pred CCC--hHHHHHhh-hCCCcccccCCccccc-cccceEEeeccCC-CC---eeeEEEEECCc--eEEEeeccCCCCCCeee
Q 001667 167 AGG--GMKELFRK-VGNRSSEFHPDVRRVR-REGSYIYEEFMPT-GG---TDVKVYTVGPE--YAHAEARKSPVVDGVVM 236 (1034)
Q Consensus 167 ~Gg--G~~~Lfrk-ign~sS~~~p~~~~~r-~~gsyIyEEFi~~-~G---~DVKvytVG~~--~vhAe~RKSPvvDG~vr 236 (1034)
..- -+++.+++ ....-.....+- ..+ -.--.|.||||.. +| .|.|+|+.++. ++....... |.-+
T Consensus 78 ~~d~~~~~~~~~~wl~~~~~~~~~E~-~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~----~~~~ 152 (239)
T PF14305_consen 78 KLDIEEAKKKLNRWLKKDYYYQSREW-HYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRF----GNHK 152 (239)
T ss_pred ccCHHHHHHHHHHHhhhccccccccc-cCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCC----CCeE
Confidence 321 11122222 111111122111 222 3456899999999 66 79999999985 555555432 1212
Q ss_pred ecC---------------CCCceeeeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeCCCeEEEee
Q 001667 237 RNP---------------DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDV 286 (1034)
Q Consensus 237 rN~---------------hgke~r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DV 286 (1034)
++. .+..+..|-.| ++-.++|.++|+-|. -|=||+..++|+.|+-|.
T Consensus 153 ~~~yd~dw~~l~~~~~~~~~~~~~kP~~l-~emi~iA~~Ls~~f~--fvRVDlY~~~~~iyFGEl 214 (239)
T PF14305_consen 153 RNFYDRDWNRLPFRSDYPPDEDIPKPKNL-EEMIEIAEKLSKGFP--FVRVDLYNVDGKIYFGEL 214 (239)
T ss_pred EEEECcccCCCccccCCCCCCCCCCChhH-HHHHHHHHHHccCCC--EEEEEEEEeCCcEEEEee
Confidence 211 12222222222 344567777777655 578999999999999887
No 85
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=91.32 E-value=0.8 Score=52.27 Aligned_cols=220 Identities=20% Similarity=0.238 Sum_probs=133.7
Q ss_pred EeecCcccCChhHH-------------HHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHH
Q 001667 11 VCVMEKKVFSAPMG-------------QILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYA 77 (1034)
Q Consensus 11 VCAMd~Ka~SkPm~-------------~IL~RL~~~~~feviiFgd~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~ 77 (1034)
|.|.|+=+....|| +-|..+++....|.||=.=+-| ..|.| --+
T Consensus 38 ViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI---------~td~L--------------~el 94 (394)
T COG0027 38 VIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI---------ATDAL--------------VEL 94 (394)
T ss_pred EEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhh---------hHHHH--------------HHH
Confidence 67778777777776 4455565555555555322222 22333 344
Q ss_pred HHcCCcccCCcchhhHHhhHHHHHHHH-HhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccC
Q 001667 78 TLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (1034)
Q Consensus 78 ~lr~p~~iNdl~~q~~l~DR~~vlqiL-~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~ged 156 (1034)
+..+-.+|-.-.+-++-.+|-..-++. ++.|+||-+|-|++.. .+..+..+ .|+.|-|+||+-+.
T Consensus 95 E~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~---------~e~~~a~~----~iGfPcvvKPvMSS- 160 (394)
T COG0027 95 EEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSL---------EELRAAVE----KIGFPCVVKPVMSS- 160 (394)
T ss_pred HhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccH---------HHHHHHHH----HcCCCeeccccccc-
Confidence 444444555555556666664433333 3469999999999872 22333333 23479999999987
Q ss_pred cceEEEeccCCCChHHHHHhhhCCCcccccCCccccc-cccceEEeeccCCCC--eeeEEEEECCc--eEEEeeccCCCC
Q 001667 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGG--TDVKVYTVGPE--YAHAEARKSPVV 231 (1034)
Q Consensus 157 Hni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r-~~gsyIyEEFi~~~G--~DVKvytVG~~--~vhAe~RKSPvv 231 (1034)
.|.|. .+.|+..+-.+-++--..--| ..+..|+|+|++-+- |=+-|=.+++. ||+ |
T Consensus 161 ----------SGkGq-svv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~------P-- 221 (394)
T COG0027 161 ----------SGKGQ-SVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCA------P-- 221 (394)
T ss_pred ----------CCCCc-eeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCC------C--
Confidence 78886 477777666666653222234 578899999998732 44444444444 554 3
Q ss_pred CCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhC-CeeeeEeeeeeCCCeEEEee
Q 001667 232 DGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFR-QAVCGFDLLRCEGRSYVCDV 286 (1034)
Q Consensus 232 DG~vrrN~hgke~r~~v~Lt~~----Ek~iA~k~~~afg-q~VCGfDLLRs~g~s~V~DV 286 (1034)
-|..+-+-+=-|.-+|-.+|+. -+.||.+|+.|+| .-|-||.|.=+.+.-|.-||
T Consensus 222 IGHrq~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDeV~FsEV 281 (394)
T COG0027 222 IGHRQEDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEV 281 (394)
T ss_pred cccccCCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCEEEEeec
Confidence 3333333344467788889874 4568888888885 67888888555555444444
No 86
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=91.17 E-value=0.61 Score=48.65 Aligned_cols=148 Identities=22% Similarity=0.336 Sum_probs=70.5
Q ss_pred HHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccc-c-CcceEEEeccCCCChHHHHHhhhCCC
Q 001667 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNR 181 (1034)
Q Consensus 104 L~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~g-e-dHni~IYyp~~~GgG~~~Lfrkign~ 181 (1034)
|++.|||+|.+..+.... +....+. .++.|+|.|+..| - .++.++-...+ -...+++.+
T Consensus 1 l~~~gip~~~~~~i~~~~---------~l~~a~~----~iG~P~vlK~~~~GYDGkGq~~i~~~~---dl~~a~~~~--- 61 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLE---------DLEEAAE----SIGFPAVLKTRRGGYDGKGQFVIRSEE---DLEKAWQEL--- 61 (172)
T ss_dssp HHHTT--B-EEEEESSHH---------HHHHHHH----HHTSSEEEEESSSSCTTTTEEEESSGG---GHHHHHHHT---
T ss_pred CcccCCCCCCeEEECCHH---------HHHHHHH----HcCCCEEEEccCcCcCCCccEEECCHH---HHHHHHHhc---
Confidence 789999999999998721 1222222 2346999997665 3 23333333221 222233322
Q ss_pred cccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHH
Q 001667 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQM 257 (1034)
Q Consensus 182 sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~i 257 (1034)
..+.+|.|+|++-. ..|=|.++-. ..-+.+-=|++ .-+.+|-.-..+-.|..+++ +=++|
T Consensus 62 ------------~~~~~ilE~~v~f~-~EiSvivaR~--~~G~~~~yp~~-en~~~~~il~~s~~Pa~i~~~~~~~a~~i 125 (172)
T PF02222_consen 62 ------------GGGPCILEEFVPFD-REISVIVARD--QDGEIRFYPPV-ENVHRDGILHESIAPARISDEVEEEAKEI 125 (172)
T ss_dssp ------------TTSCEEEEE---ES-EEEEEEEEEE--TTSEEEEEEEE-EEEEETTEEEEEEESCSS-HHHHHHHHHH
T ss_pred ------------CCCcEEEEeccCCc-EEEEEEEEEc--CCCCEEEEcCc-eEEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence 47889999998732 2232322210 00011111111 01112222233445666775 44567
Q ss_pred HHHHHHHhCC-eeeeEeeeeeCCC--eEEEee
Q 001667 258 AREVCIAFRQ-AVCGFDLLRCEGR--SYVCDV 286 (1034)
Q Consensus 258 A~k~~~afgq-~VCGfDLLRs~g~--s~V~DV 286 (1034)
|.+|+.+++- -|-++.+.=+.+| -||=|+
T Consensus 126 a~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEi 157 (172)
T PF02222_consen 126 ARKIAEALDYVGVLAVEFFVTKDGDEVLVNEI 157 (172)
T ss_dssp HHHHHHHHTSSEEEEEEEEEETTSTEEEEEEE
T ss_pred HHHHHHHcCcEEEEEEEEEEecCCCEEEEEec
Confidence 8888888864 4667777766444 466554
No 87
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=91.14 E-value=0.14 Score=59.15 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=40.8
Q ss_pred HHHHHHhc--cCCCCcchhhh--hhcccccceEeecCCchHHHHHHHHHhhhcccCCCCCcceeeeEecCCCC
Q 001667 495 NEIAYWWG--SHSEGTGLLRL--HSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSM 563 (1034)
Q Consensus 495 e~LG~~fR--Yp~~~~GLLrL--hst~rhDlKIysSdEgRVq~TAaaFakg~L~legeLtPilv~~V~Kd~~l 563 (1034)
=.+|..|| |-- -+|.+ |.---.|+-++|+--+|.-.||-||-=+||--. ...|| .||-..++
T Consensus 178 L~~G~~~r~~Y~k---~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~-~w~~i---~iR~s~s~ 243 (487)
T KOG3672|consen 178 LRLGKYFRHRYEK---TKLKADPNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRT-FWAPI---QIRASNSS 243 (487)
T ss_pred HhhhHHHHHHHhh---ccccCCccccccceeEEEeccccHHHHHHHHHHHHhcchh-hhhee---eeecCccc
Confidence 35799999 631 12222 233346777999999999999999988887654 35565 35544333
No 88
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.07 E-value=0.38 Score=55.20 Aligned_cols=203 Identities=19% Similarity=0.224 Sum_probs=130.8
Q ss_pred HHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhC-------CCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCC
Q 001667 74 ESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP 146 (1034)
Q Consensus 74 i~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~-------gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kP 146 (1034)
+.=+..-+...||++..-+-+-||--+..-|.+. .+|+=.-.+.-. ....+..- ..|
T Consensus 178 vig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn------------HK~m~s~~----tyP 241 (488)
T KOG3895|consen 178 VIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN------------HKEMLSQP----TYP 241 (488)
T ss_pred HHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC------------chhhccCC----CCc
Confidence 3344555778899999999999995555444442 244322222211 23333333 269
Q ss_pred EEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccc-cccceEEeeccCCCCeeeEEEEECCceEEEee
Q 001667 147 FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEA 225 (1034)
Q Consensus 147 fVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r-~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~ 225 (1034)
.|+|.-.|- +|.|-. |+.|..-.-|-+. .+. .+.---.|-||..+ -|||+=-+|.+|-+=|+
T Consensus 242 vVVkvghah-----------sGmGKi----KV~Nh~dfqDi~s-vval~~Tyat~epFiDaK-YDiriQKIG~nYKaymR 304 (488)
T KOG3895|consen 242 VVVKVGHAH-----------SGMGKI----KVENHEDFQDIAS-VVALTKTYATAEPFIDAK-YDIRIQKIGHNYKAYMR 304 (488)
T ss_pred EEEEecccc-----------ccccee----eecchhhhHhHHH-HHHHHhhhhhcccccccc-ceeehhhhhhhHHHHhh
Confidence 999997776 787743 3433332222110 111 22223456677653 59999999999977665
Q ss_pred ccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhC-CeeeeEeeeee-CCCeEEEeecCceecccchhhHHH--
Q 001667 226 RKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-QAVCGFDLLRC-EGRSYVCDVNGWSFVKNSYKYYDD-- 301 (1034)
Q Consensus 226 RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afg-q~VCGfDLLRs-~g~s~V~DVNGwSFVK~n~kYYDd-- 301 (1034)
| | +-|....|+ |-.+-+.|..|+..|...--++..|| +.||.||.|-+ .|+-||+|||+-| +-|+-+
T Consensus 305 t-s--IsgnWKtNt-GSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~s-----mpliGeh~ 375 (488)
T KOG3895|consen 305 T-S--ISGNWKTNT-GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSS-----MPLIGEHQ 375 (488)
T ss_pred h-h--hccCcccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecccc-----ccccccch
Confidence 4 5 489998887 56666778888889988888888885 89999999999 5889999999855 445432
Q ss_pred --HHHHHHHHHHHhhCCCC
Q 001667 302 --AACVLRKMFLEAKAPHL 318 (1034)
Q Consensus 302 --cA~iL~~~~l~~~~~~~ 318 (1034)
=.+.+.++....+++.+
T Consensus 376 eeDrql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 376 EEDRQLISELVVSKMAQLL 394 (488)
T ss_pred hHHHHHHHHHHHHHhhhcc
Confidence 23455555555555554
No 89
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=89.18 E-value=1.7 Score=50.64 Aligned_cols=168 Identities=20% Similarity=0.265 Sum_probs=100.6
Q ss_pred HHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEee
Q 001667 72 KAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (1034)
Q Consensus 72 kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKp 151 (1034)
.++.++... ..+-=......+++||+.==+.|++.|||+|.+..+.+.. +....+. .|+.|+|+|.
T Consensus 76 ~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~---------el~~~~~----~~g~p~VlKt 141 (375)
T COG0026 76 EALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAE---------ELDAAAA----DLGFPAVLKT 141 (375)
T ss_pred HHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHH---------HHHHHHH----HcCCceEEEe
Confidence 466777666 3333456788999999999999999999999999998731 2222222 2336999999
Q ss_pred ccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCC
Q 001667 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV 231 (1034)
Q Consensus 152 v~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvv 231 (1034)
--|- | .|.|.. ..+......+... ..-..+..|.|+|++=+.+ |-|.++ | + .
T Consensus 142 r~gG-------Y---DGkGQ~-~i~~~~~~~~~~~----~~~~~~~~vlE~fV~F~~E-iSvi~a---------R-~--~ 193 (375)
T COG0026 142 RRGG-------Y---DGKGQW-RIRSDADLELRAA----GLAEGGVPVLEEFVPFERE-ISVIVA---------R-S--N 193 (375)
T ss_pred cccc-------c---cCCCeE-EeeCcccchhhHh----hhhccCceeEEeecccceE-EEEEEE---------E-c--C
Confidence 9873 1 366653 3333222222111 1112344499999987543 333332 1 1 1
Q ss_pred CCeee-----ecCCCCcee-e---eeeCCH----HHHHHHHHHHHHhCC-eeeeEeeeeeCCCe
Q 001667 232 DGVVM-----RNPDGKEVR-Y---PVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRS 281 (1034)
Q Consensus 232 DG~vr-----rN~hgke~r-~---~v~Lt~----~Ek~iA~k~~~afgq-~VCGfDLLRs~g~s 281 (1034)
||.+. -|.|..++= + |..+++ +=++||.+++..++. -|-||.+-=..+|.
T Consensus 194 ~G~~~~yP~~eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~ 257 (375)
T COG0026 194 DGEVAFYPVAENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGE 257 (375)
T ss_pred CCCEEEecccceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCc
Confidence 44443 466765553 2 223454 455788888887764 46667776666643
No 90
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=82.43 E-value=9.6 Score=38.23 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=51.3
Q ss_pred cccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHH--HhCCeeee
Q 001667 194 REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI--AFRQAVCG 271 (1034)
Q Consensus 194 ~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~--afgq~VCG 271 (1034)
.+...+..|-+. -..--|+|++.++++.+-.= .|. -+..+ .++-..-|.++.+ .-.-..|.
T Consensus 34 ~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y-----~~~---------~~~~~--~~~~~~~~~~~~~~~~~~p~~~v 96 (130)
T PF14243_consen 34 PDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPY-----RGD---------WDLEP--DPDVVAFAIQALAAAWTLPPAYV 96 (130)
T ss_pred CCceEEEeceEe-eeeeEEEEEECCEEEEEeec-----CCC---------cccCC--CHHHHHHHHHHHHhcccCCCeEE
Confidence 456667666665 45677999999887765332 111 11111 3333334444444 44578899
Q ss_pred Eeeeee-CCCeEEEeec-Cce
Q 001667 272 FDLLRC-EGRSYVCDVN-GWS 290 (1034)
Q Consensus 272 fDLLRs-~g~s~V~DVN-GwS 290 (1034)
+|+=++ +|+.+|+|+| ||+
T Consensus 97 lDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 97 LDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred EEEEEeCCCCEEEEEecCccc
Confidence 999999 7899999999 776
No 91
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=74.12 E-value=2.4 Score=50.45 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=39.8
Q ss_pred cch--HHHHHHhc--cCCCCcchhhhhhcc-cccceEeecCCchHHHHHHHHHhhhcccCC
Q 001667 492 NGV--NEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (1034)
Q Consensus 492 GGE--e~LG~~fR--Yp~~~~GLLrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (1034)
|++ -.||+.+| |-. .|||-=+..| ..++.|+|++-.|.++||++|..||.--.|
T Consensus 77 G~~~~~~lG~~lR~rY~~--~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~ 135 (436)
T PRK10172 77 GGELVTLLGHYQRQRLVA--DGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA 135 (436)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 555 57999999 632 3555222122 456899988888999999999999988765
No 92
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=72.47 E-value=9.4 Score=45.38 Aligned_cols=213 Identities=16% Similarity=0.204 Sum_probs=121.4
Q ss_pred HHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhh-HHhhHHHHHHHHH
Q 001667 27 LDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQH-LLHDRRKVYEQLE 105 (1034)
Q Consensus 27 L~RL~~~~~feviiFgd~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~-~l~DR~~vlqiL~ 105 (1034)
|.++.....+|++|-|-+.-|-.. +...++.++..+.--...=+ +=++|--+=++++
T Consensus 55 lv~fA~~~~idl~vVGPE~pL~~G----------------------vvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~ 112 (428)
T COG0151 55 LVAFAKEKNVDLVVVGPEAPLVAG----------------------VVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMK 112 (428)
T ss_pred HHHHHHHcCCCEEEECCcHHHhhh----------------------hHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHH
Confidence 444444455666666655544442 34444444444333222222 3345666778899
Q ss_pred hCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccc
Q 001667 106 KYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185 (1034)
Q Consensus 106 ~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~ 185 (1034)
++|||++.+-..+. ..+...+|.--| .|+|+||.-=. .|.||. ..-.+..+..-.
T Consensus 113 k~~IPta~y~~f~~---------~e~a~ayi~~~g----~piVVKadGLa-----------aGKGV~-V~~~~eeA~~a~ 167 (428)
T COG0151 113 KYGIPTAEYEVFTD---------PEEAKAYIDEKG----APIVVKADGLA-----------AGKGVI-VAMTLEEAEAAV 167 (428)
T ss_pred HcCCCcccccccCC---------HHHHHHHHHHcC----CCEEEeccccc-----------CCCCeE-EcCCHHHHHHHH
Confidence 99999999887774 224566775333 69999994323 567774 333322221111
Q ss_pred cCCc--cccc-cccceEEeeccCCCCeeeEEEEECCceEE---EeeccCCCCCCeeeecCCCCceeeeee-CCHHHH---
Q 001667 186 HPDV--RRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK--- 255 (1034)
Q Consensus 186 ~p~~--~~~r-~~gsyIyEEFi~~~G~DVKvytVG~~~vh---Ae~RKSPvvDG~vrrN~hgke~r~~v~-Lt~~Ek--- 255 (1034)
+.=+ +.+. .....+.|||+.-.=--+=|+|=|.+++- |---| -+.||+-=-|+-|=+.=.|+. +|++.-
T Consensus 168 ~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhK-ra~dgD~GPNTGGMGaysp~P~~t~e~~~~~ 246 (428)
T COG0151 168 DEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHK-RAYDGDTGPNTGGMGAYSPAPFITDEVVERA 246 (428)
T ss_pred HHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECccccccc-cccCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 1000 0122 12568999999865566777777776542 21111 135888888998877666553 455533
Q ss_pred --HHHHHHHHHhCC---eeeeE---eeeeeCCCeEEEeec
Q 001667 256 --QMAREVCIAFRQ---AVCGF---DLLRCEGRSYVCDVN 287 (1034)
Q Consensus 256 --~iA~k~~~afgq---~VCGf---DLLRs~g~s~V~DVN 287 (1034)
+|-..+.++|.. .-+|| =|.=+..||+|+|-|
T Consensus 247 ~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN 286 (428)
T COG0151 247 VEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFN 286 (428)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEe
Confidence 334455555554 46666 233456779999999
No 93
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=72.18 E-value=1.3 Score=48.70 Aligned_cols=54 Identities=24% Similarity=0.600 Sum_probs=27.9
Q ss_pred CEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC----CC--eeeEEEEEC
Q 001667 146 PFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT----GG--TDVKVYTVG 217 (1034)
Q Consensus 146 PfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~----~G--~DVKvytVG 217 (1034)
-+|.||-.|. +|.|.. |++.. +.+.. . .....+.||+|+||.. +| -|||+||+=
T Consensus 67 ~wI~KP~~~~-----------rG~GI~-l~~~~----~~i~~-~-~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlv 126 (292)
T PF03133_consen 67 LWIVKPSNGS-----------RGRGIK-LFNNL----EQILR-F-SKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLV 126 (292)
T ss_dssp -EEEEES------------------EE-EES-H----HHHHC-C-HCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE
T ss_pred EEEEeccccC-----------CCCCce-ecCCH----HHHHH-H-hhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEE
Confidence 5899998887 777773 66543 11110 0 1236899999999974 77 899999873
No 94
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=68.74 E-value=5.2 Score=47.10 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=38.7
Q ss_pred HHHHHHhc--cCCCCcchhhhhhcccccceEeecCCchHHHHHHHHHhhhcccCCC
Q 001667 495 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (1034)
Q Consensus 495 e~LG~~fR--Yp~~~~GLLrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~lege 548 (1034)
-+||+.+| |=..+ ++| -..=-+.++.|+|||=-|+.|||++..+||+.-++.
T Consensus 80 ~~LG~~LR~rYvr~~-~fL-~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~ 133 (411)
T KOG3720|consen 80 FELGRFLRKRYVRYG-NFL-SPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGR 133 (411)
T ss_pred HHHHHHHHHHHhhcc-ccC-CcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCC
Confidence 47999998 42111 122 112227899999999999999999999999998754
No 95
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=68.61 E-value=4.5 Score=38.93 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.2
Q ss_pred ccceEeecCCchHHHHHHHHHhhhc
Q 001667 519 HDLKIYSSDEGRVQMSAAAFAKGLL 543 (1034)
Q Consensus 519 hDlKIysSdEgRVq~TAaaFakg~L 543 (1034)
.-..||||+-.||+.||++|+.++.
T Consensus 47 ~~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 47 KFDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred CCCEEEECChHHHHHHHHHHHHHhc
Confidence 3457999999999999999999985
No 96
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=65.36 E-value=12 Score=44.13 Aligned_cols=65 Identities=26% Similarity=0.414 Sum_probs=47.4
Q ss_pred CEEEeeccc-cCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC---CCe--eeEEEEECCc
Q 001667 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GGT--DVKVYTVGPE 219 (1034)
Q Consensus 146 PfVeKpv~g-edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~---~G~--DVKvytVG~~ 219 (1034)
.+|.||+-| |.-||-|+-+ |+. +.++-|+ |. +..+|||+|.+- +|. =|=+++||+.
T Consensus 309 ~yV~KPi~gREG~nV~i~~~----g~~--~~~~~g~----y~--------~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~ 370 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEY----GGE--SEDTDGN----YA--------EEPRVVQQLIEWGRFDGCYPMIGVWMVGSE 370 (397)
T ss_pred CEEeccCCCcCCCCEEEEEC----CeE--EeccCCC----CC--------CCCeEEEEccCCcccCCcEEEEEEEEECCE
Confidence 499999999 8888888853 232 2222111 33 577899999975 553 4788999999
Q ss_pred eEEEeeccC
Q 001667 220 YAHAEARKS 228 (1034)
Q Consensus 220 ~vhAe~RKS 228 (1034)
+|.---|.+
T Consensus 371 ~aGlgiRe~ 379 (397)
T PHA02117 371 AAGLCIRED 379 (397)
T ss_pred eeEEEEecC
Confidence 999999987
No 97
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=65.18 E-value=4.2 Score=47.90 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=25.5
Q ss_pred cccccceEEEEecCCCCCCCCCeeEEEEEecCCCCCCCC
Q 001667 908 DYMSYIVLRMFENTAVALEDPKRFRIELTFSRGADLSPL 946 (1034)
Q Consensus 908 dYLSqIvf~lYE~~~~~~~~~~rf~Iei~~SpG~~~~pl 946 (1034)
.|-+.|.||+|++.+ ..+.|+|.+.-..+..|+
T Consensus 317 ~yas~i~iEl~~~~~------~~~~vk~~yr~~~~~~~~ 349 (411)
T KOG3720|consen 317 PYASAIAIELHRNKG------GKPYVKLLYRNDEHSEPV 349 (411)
T ss_pred chHHHhHhhheecCC------CCEEEEEEEecCCCCCce
Confidence 588999999999985 667888888766654443
No 98
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=64.29 E-value=4.9 Score=47.87 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=37.2
Q ss_pred eeEEEeecchhHHHHHHHHHhc-CCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCee-EEEEE
Q 001667 859 RTRLYFTSESHIHSLMNVLRYC-NLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRF-RIELT 936 (1034)
Q Consensus 859 RTrlYFTsESHIhSLLNvlr~g-~l~~~~~~~~~~i~~~A~~~l~~i~ELdYLSqIvf~lYE~~~~~~~~~~rf-~Iei~ 936 (1034)
|-.+|.--.|.|-+|++.|..- .|+.. ...+| +=+-+|||+|++.+ +.++| +|++.
T Consensus 322 kl~~lvGHDTNIA~l~~~L~~~w~lp~q---------------~~~tP---pGg~LvFErw~d~~----~~~~~vrv~~~ 379 (436)
T PRK10172 322 SVLFIAGHDTNLANLGGALELNWTLPGQ---------------PDNTP---PGGELVFERWRRLS----DNSQWIQVSLV 379 (436)
T ss_pred eEEEEEecchhHHHHHHHhCCCccCCCC---------------CCCCC---CcceEEEEEEeeCC----CCceEEEEEEE
Confidence 6789999999999999999541 12211 11222 34789999999863 34554 77643
No 99
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=54.81 E-value=9.5 Score=43.72 Aligned_cols=152 Identities=24% Similarity=0.330 Sum_probs=84.2
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhh
Q 001667 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK 177 (1034)
Q Consensus 98 ~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrk 177 (1034)
=.-|.+-.+.|+|.|+|..++.. .| ..+-.+..|.|.||-.| ||+-...|+
T Consensus 116 PllY~ra~elgl~~P~Ty~v~S~------------~d---~~~~el~FPvILKP~mg--------------g~~~~~ara 166 (415)
T COG3919 116 PLLYNRAEELGLPYPKTYLVNSE------------ID---TLVDELTFPVILKPGMG--------------GSVHFEARA 166 (415)
T ss_pred cHHHHHHHHhCCCCcceEEecch------------hh---hhhhheeeeEEecCCCC--------------Ccceeehhh
Confidence 34578888999999999999872 11 12222356899999654 233223332
Q ss_pred hCCCcc---cccCCcc-ccc--cccceEEeeccCCCCeeeEEEE----ECCce---EEEeeccCCCCCCeeeecCCCCce
Q 001667 178 VGNRSS---EFHPDVR-RVR--REGSYIYEEFMPTGGTDVKVYT----VGPEY---AHAEARKSPVVDGVVMRNPDGKEV 244 (1034)
Q Consensus 178 ign~sS---~~~p~~~-~~r--~~gsyIyEEFi~~~G~DVKvyt----VG~~~---vhAe~RKSPvvDG~vrrN~hgke~ 244 (1034)
.--.-+ ++..-++ +.. ---+.|+||||+-+|+.-++|. -|-.+ .+--+|+=||--| -.
T Consensus 167 Ka~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqyPvdfg---------yt 237 (415)
T COG3919 167 KAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQYPVDFG---------YT 237 (415)
T ss_pred heeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcCCcccc---------cc
Confidence 211100 0000000 011 1236799999999999888764 23333 2333566663332 23
Q ss_pred eeeeeCCH--HHHHHHHHHHHHhCC-eeeeEeeeee-CCCeE-EEeec
Q 001667 245 RYPVLLTP--NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSY-VCDVN 287 (1034)
Q Consensus 245 r~~v~Lt~--~Ek~iA~k~~~afgq-~VCGfDLLRs-~g~s~-V~DVN 287 (1034)
.+.|++-. +--+-|+++-...+- -..-||+=+. .+||| ++|||
T Consensus 238 st~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvN 285 (415)
T COG3919 238 STVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVN 285 (415)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeec
Confidence 34555555 223345555554443 3566888887 45665 89999
No 100
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=52.94 E-value=15 Score=32.65 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.7
Q ss_pred eeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCe
Q 001667 235 VMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA 268 (1034)
Q Consensus 235 vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~ 268 (1034)
|+.+...-+..+|..||++|+.+...+|.-||+.
T Consensus 11 Fkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 11 FKDDRMRDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred EecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 5656668899999999999999999999999986
No 101
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=50.85 E-value=31 Score=43.13 Aligned_cols=66 Identities=26% Similarity=0.375 Sum_probs=48.2
Q ss_pred CEEEeeccc-cCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC---CC--eeeEEEEECCc
Q 001667 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVGPE 219 (1034)
Q Consensus 146 PfVeKpv~g-edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~---~G--~DVKvytVG~~ 219 (1034)
.+|.||+-| |.-||-|+-+. |. .+.++-|. |. +..+|||+|.+- +| .=|=+++||+.
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~----g~-~~~~~~g~----y~--------~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~ 591 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQ----EE-VLDKTSGK----FA--------EQKNIYQQLWCLPKVDGKYIQVCTFTVGGN 591 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCC----Cc-EeeccCCC----CC--------CCCeEEEEeccCcccCCCEEEEEEEEECCE
Confidence 599999999 88888888542 22 12222222 44 567899999975 33 55778999999
Q ss_pred eEEEeeccC
Q 001667 220 YAHAEARKS 228 (1034)
Q Consensus 220 ~vhAe~RKS 228 (1034)
+|..--|.+
T Consensus 592 ~aG~giRed 600 (619)
T PRK10507 592 YGGTCLRGD 600 (619)
T ss_pred EEEEEEecC
Confidence 999999988
No 102
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=46.60 E-value=16 Score=35.29 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=19.2
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKGL 542 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (1034)
.||||.-.||+-||+++++++
T Consensus 50 ~i~~Sp~~R~~qTA~~~~~~~ 70 (158)
T PF00300_consen 50 VIYSSPLRRCIQTAEIIAEGL 70 (158)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEecCCcchhhhhhchhhccc
Confidence 399999999999999999954
No 103
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=46.19 E-value=15 Score=43.53 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=40.5
Q ss_pred cch--HHHHHHhc-cCCCCcchhhhhhc-ccccceEeecCCchHHHHHHHHHhhhcccCC
Q 001667 492 NGV--NEIAYWWG-SHSEGTGLLRLHST-YRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (1034)
Q Consensus 492 GGE--e~LG~~fR-Yp~~~~GLLrLhst-~rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (1034)
|++ ..+|+.+| |. ...|||--+-- --.++.+||++--|.+.||++|+.||.--.+
T Consensus 75 G~~~~~~~G~~~r~~~-~~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~ 133 (413)
T PRK10173 75 GGVLEVYMGHYMREWL-AQQGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD 133 (413)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 666 67999999 32 24566532110 1247999999999999999999999987654
No 104
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=39.95 E-value=20 Score=36.13 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.9
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKGL 542 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (1034)
.||||.-.|++.||+++++.+
T Consensus 46 ~i~sSpl~Ra~qTA~~i~~~~ 66 (177)
T TIGR03162 46 AVYSSPLSRCRELAEILAERR 66 (177)
T ss_pred EEEECchHHHHHHHHHHHhhc
Confidence 499999999999999998753
No 105
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=39.19 E-value=22 Score=34.77 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=20.0
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKGL 542 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (1034)
.||||.-.|++.||+++++++
T Consensus 50 ~i~~Sp~~Ra~qTa~~l~~~~ 70 (153)
T cd07067 50 RIYSSPLKRAIQTAEIILEEL 70 (153)
T ss_pred EEEECcHHHHHHHHHHHHHhc
Confidence 699999999999999999887
No 106
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=37.89 E-value=13 Score=42.91 Aligned_cols=42 Identities=31% Similarity=0.460 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeec
Q 001667 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPV 152 (1034)
Q Consensus 98 ~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv 152 (1034)
..+.++|++.|||+|.+.++... . +....+. +++ .|+|+||.
T Consensus 6 ~~aK~ll~~~GIpvp~~~~~~~~--~-------ea~~~~~~ig~----~PvVvK~~ 48 (386)
T TIGR01016 6 YQAKQIFAKYGIPVPRGYVATSV--E-------EAEEIAAKLGA----GPVVVKAQ 48 (386)
T ss_pred HHHHHHHHHcCCCCCCceeeCCH--H-------HHHHHHHHhCC----CcEEEEec
Confidence 35789999999999999988551 1 1112221 331 59999997
No 107
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=36.11 E-value=11 Score=40.57 Aligned_cols=42 Identities=38% Similarity=0.579 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeecc
Q 001667 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVH 153 (1034)
Q Consensus 99 ~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~ 153 (1034)
.+-++|.++|||+|+..++... . +..+... +++ +++|+|+.-
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~--e-------ea~~~~~~l~~----~~~VvKaQv 48 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSP--E-------EAREAAKELGG----KPLVVKAQV 48 (202)
T ss_dssp HHHHHHHCTT----SEEEESSH--H-------HHHHHHHHHTT----SSEEEEE-S
T ss_pred HHHHHHHHcCCCCCCeeecCCH--H-------HHHHHHHHhCC----CcEEEEEeE
Confidence 4678999999999999999873 2 3333332 565 589999954
No 108
>PRK03482 phosphoglycerate mutase; Provisional
Probab=32.56 E-value=33 Score=36.16 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=18.5
Q ss_pred eEeecCCchHHHHHHHHHhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKG 541 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg 541 (1034)
.||||.-.|++-||+++++.
T Consensus 50 ~I~sSpl~Ra~qTA~~i~~~ 69 (215)
T PRK03482 50 HIISSDLGRTRRTAEIIAQA 69 (215)
T ss_pred EEEECCcHHHHHHHHHHHHh
Confidence 69999999999999999865
No 109
>PRK13463 phosphatase PhoE; Provisional
Probab=31.85 E-value=33 Score=36.08 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.1
Q ss_pred eEeecCCchHHHHHHHHHhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKG 541 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg 541 (1034)
.||||+-.|++-||++++..
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~ 70 (203)
T PRK13463 51 AIYSSPSERTLHTAELIKGE 70 (203)
T ss_pred EEEECCcHHHHHHHHHHHhc
Confidence 59999999999999999763
No 110
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=31.83 E-value=37 Score=40.34 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=33.2
Q ss_pred eeEEEeecchhHHHHHHHHHhcCCcc-cccccchhhhhhhhhhhcCCCCCcccccceEEEEecC
Q 001667 859 RTRLYFTSESHIHSLMNVLRYCNLDE-SLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENT 921 (1034)
Q Consensus 859 RTrlYFTsESHIhSLLNvlr~g~l~~-~~~~~~~~i~~~A~~~l~~i~ELdYLSqIvf~lYE~~ 921 (1034)
|-.+||.-.|.|.+|++.|- +.. .+- .....--|=+.|+||+|.+.
T Consensus 304 Kl~lysgHDtnIa~ll~ALg---l~~~~lP--------------~~~~~~P~g~~LvFEl~~d~ 350 (413)
T PRK10173 304 KVTVLVGHDSNIASLLTALD---FKPYQLH--------------DQYERTPIGGKIVFQRWHDS 350 (413)
T ss_pred CEEEEEEccccHHHHHHHhC---CCccccC--------------CCCCcCCccceEEEEEEEeC
Confidence 56899999999999999983 321 110 01134568899999999976
No 111
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.01 E-value=31 Score=34.70 Aligned_cols=72 Identities=11% Similarity=0.230 Sum_probs=51.3
Q ss_pred eeEEEEeecCcccCChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHHH
Q 001667 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATL 79 (1034)
Q Consensus 6 ~~~iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiFgd~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~l 79 (1034)
--.||+|+|+--.... |+.++.+|.+.+--++.|+-.=.+.+++.+.|=...+ =.||+.|-|+...++++..
T Consensus 54 adii~iSsl~~~~~~~-~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 54 VHVVGVSSLAGGHLTL-VPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred CCEEEEcCchhhhHHH-HHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHHHHHHHHH
Confidence 3479999999665555 9999999988764466555554555666666655443 4678899999888888764
No 112
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=29.79 E-value=37 Score=35.30 Aligned_cols=23 Identities=39% Similarity=0.325 Sum_probs=20.2
Q ss_pred ceEeecCCchHHHHHHHHHhhhc
Q 001667 521 LKIYSSDEGRVQMSAAAFAKGLL 543 (1034)
Q Consensus 521 lKIysSdEgRVq~TAaaFakg~L 543 (1034)
-.||||+-.|++-||++.|+.+-
T Consensus 52 ~~i~sS~l~Ra~~TA~~~a~~~~ 74 (208)
T COG0406 52 DAIYSSPLKRAQQTAEPLAEELG 74 (208)
T ss_pred CEEEECchHHHHHHHHHHHHhcC
Confidence 34899999999999999998764
No 113
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=28.95 E-value=42 Score=33.20 Aligned_cols=21 Identities=43% Similarity=0.382 Sum_probs=19.0
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKGL 542 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (1034)
.||||.-.|++-||+++++.+
T Consensus 51 ~i~sSpl~Ra~qTa~~i~~~~ 71 (155)
T smart00855 51 VIYSSPLLRARETAEALAIAL 71 (155)
T ss_pred EEEeCchHHHHHHHHHHHHhc
Confidence 499999999999999998765
No 114
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=27.26 E-value=44 Score=36.25 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.5
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKGL 542 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (1034)
.||||+-.|++-||+++++++
T Consensus 39 ~iysSpl~Ra~qTA~~i~~~~ 59 (236)
T PTZ00123 39 VVYTSVLKRAIKTAWIVLEEL 59 (236)
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 699999999999999999765
No 115
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=27.25 E-value=22 Score=41.29 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEcceecCCCEEEeec
Q 001667 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPV 152 (1034)
Q Consensus 98 ~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i-~v~G~~~~kPfVeKpv 152 (1034)
..+.++|+++|||+|.+.++... . +..... +++ +.|+|+||.
T Consensus 6 ~~ak~lL~~~gIpvp~~~~~~~~--~-------ea~~~a~~i~----g~PvVvK~~ 48 (388)
T PRK00696 6 YQAKELFAKYGVPVPRGIVATTP--E-------EAVEAAEELG----GGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHHcCCCCCCCeeeCCH--H-------HHHHHHHHcC----CCcEEEEEe
Confidence 45678999999999999988762 1 111222 132 369999996
No 116
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=27.12 E-value=1.3e+02 Score=39.07 Aligned_cols=181 Identities=23% Similarity=0.320 Sum_probs=116.3
Q ss_pred CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEE
Q 001667 82 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMI 161 (1034)
Q Consensus 82 p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~I 161 (1034)
.|+==.++....+=|+-++-.+-.++|||+= -..++|... ..+...+.+ ..+.|+++|-.-|-
T Consensus 107 ~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvi----pgt~~~~~~---~ee~~~fa~----~~gyPvmiKA~~GG------ 169 (1149)
T COG1038 107 TFIGPKPEVLDMLGDKVKARNAAIKAGVPVI----PGTDGPIET---IEEALEFAE----EYGYPVMIKAAAGG------ 169 (1149)
T ss_pred EEeCCCHHHHHHhccHHHHHHHHHHcCCCcc----CCCCCCccc---HHHHHHHHH----hcCCcEEEEEccCC------
Confidence 4555567888889999988888889999952 222332210 112222222 23479999998875
Q ss_pred EeccCCCChHH------HHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEEC---CceEEEeeccCCCCC
Q 001667 162 YYPSSAGGGMK------ELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVD 232 (1034)
Q Consensus 162 Yyp~~~GgG~~------~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG---~~~vhAe~RKSPvvD 232 (1034)
-|.|+| .|.+..-.++|+=.+ ++..+.-| .|.|+. +-.-|-|=+.| ++++|--.|-+-
T Consensus 170 -----GGRGMR~vr~~~~l~~~~~~AksEAka---AFG~~eVy-vEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCS--- 236 (1149)
T COG1038 170 -----GGRGMRVVRSEADLAEAFERAKSEAKA---AFGNDEVY-VEKLVE-NPKHIEVQILGDTHGNVVHLFERDCS--- 236 (1149)
T ss_pred -----CccceeeecCHHHHHHHHHHHHHHHHH---hcCCCcEE-hhhhhc-CcceeEEEEeecCCCCEEEEeecccc---
Confidence 344543 123333344444443 44444433 366665 44556666666 468999999885
Q ss_pred CeeeecCCCCceeeeeeCCHHHHH----HHHHHHHHhCCeeee-Eeeeee-CCCeEEEeecCceecc
Q 001667 233 GVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFVK 293 (1034)
Q Consensus 233 G~vrrN~hgke~r~~v~Lt~~Ek~----iA~k~~~afgq~VCG-fDLLRs-~g~s~V~DVNGwSFVK 293 (1034)
.=|||--==|++-.+-|+++-++ -|.|+|+..|-.=+| |..|=. .|+-|.||||=-=-|-
T Consensus 237 -vQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVE 302 (1149)
T COG1038 237 -VQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVE 302 (1149)
T ss_pred -hhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceeeE
Confidence 33676666688888999997764 579999999987777 566655 5699999999654443
No 117
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=27.04 E-value=42 Score=34.96 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=18.6
Q ss_pred eEeecCCchHHHHHHHHHhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKG 541 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg 541 (1034)
+||||.-.|++-||++++++
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~ 68 (199)
T PRK15004 49 LVLCSELERAQHTARLVLSD 68 (199)
T ss_pred EEEECchHHHHHHHHHHHhc
Confidence 49999999999999999875
No 118
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=26.32 E-value=46 Score=34.79 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=19.2
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKGL 542 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (1034)
.||||+-.|++-||+++++.+
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 49 AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred EEEeCcHHHHHHHHHHHHHhc
Confidence 599999999999999999864
No 119
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=25.73 E-value=52 Score=33.37 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKGL 542 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (1034)
.||||.=.|++-||+++++.+
T Consensus 47 ~i~sSp~~Ra~qTa~~l~~~~ 67 (152)
T TIGR00249 47 RILVSPFVRAEQTAEIVGDCL 67 (152)
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 699999999999999999886
No 120
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=24.06 E-value=25 Score=40.35 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=44.4
Q ss_pred CCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccc--cceEEeeccCCCCeeeEEEEECCceE
Q 001667 144 WKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPTGGTDVKVYTVGPEYA 221 (1034)
Q Consensus 144 ~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~--gsyIyEEFi~~~G~DVKvytVG~~~v 221 (1034)
+.|+|.||+.|+ +|.|.+...+.+-+..-.-.+....++.+ -+.+.|+|. .|.|-++||.+.+..
T Consensus 87 giPyvg~gv~~S-----------a~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~g 153 (317)
T COG1181 87 GIPYVGKGVLAS-----------AGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAREG 153 (317)
T ss_pred CCCEecCchhhh-----------hhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCcc
Confidence 379999999998 89887644443333333322221122222 333444433 588899999999988
Q ss_pred EEeeccC
Q 001667 222 HAEARKS 228 (1034)
Q Consensus 222 hAe~RKS 228 (1034)
.+--|.-
T Consensus 154 SSvg~~~ 160 (317)
T COG1181 154 SSVGRSP 160 (317)
T ss_pred ceeeEEE
Confidence 8766644
No 121
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=23.89 E-value=21 Score=38.91 Aligned_cols=94 Identities=34% Similarity=0.526 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEcceecCCCEEEeeccccCcceEEEeccCCCC------
Q 001667 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGG------ 169 (1034)
Q Consensus 97 R~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i-~v~G~~~~kPfVeKpv~gedHni~IYyp~~~Gg------ 169 (1034)
-..++++|+..|||+|.+.++... + +..... .++ .|+|.|.++-. |-..+..||
T Consensus 12 e~e~~~lL~~yGI~~~~~~~~~~~--~-------ea~~~a~~ig-----~PvvlKi~sp~-----i~HKsd~GgV~L~l~ 72 (222)
T PF13549_consen 12 EAEAKELLAAYGIPVPPTRLVTSA--E-------EAVAAAEEIG-----FPVVLKIVSPD-----IAHKSDVGGVRLNLN 72 (222)
T ss_dssp HHHHHHHHHTTT------EEESSH--H-------HHHHHHHHH------SSEEEEEE-TT--------HHHHT-EEEEE-
T ss_pred HHHHHHHHHHcCcCCCCeeEeCCH--H-------HHHHHHHHhC-----CCEEEEEecCC-----CCcCCCCCcEEECCC
Confidence 367999999999999999998772 1 111111 133 59999999864 112222221
Q ss_pred ---hHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001667 170 ---GMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1034)
Q Consensus 170 ---G~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1034)
.++.-|+.+-++-..+.|+. .-..+++|+-.+..|..+-+
T Consensus 73 ~~~~v~~a~~~l~~~~~~~~p~~----~~~gvlVq~m~~~~g~El~v 115 (222)
T PF13549_consen 73 SPEEVREAFERLRERVAAHHPGA----RIDGVLVQEMAPSGGRELIV 115 (222)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TT--------EEEEEE------EEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC----ccceEEEEEcccCCcEEEEE
Confidence 23334444433333333310 13457888887655655543
No 122
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=23.42 E-value=38 Score=39.84 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEcceecCCCEEEeecc
Q 001667 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVH 153 (1034)
Q Consensus 99 ~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i-~v~G~~~~kPfVeKpv~ 153 (1034)
.+.++|++.|||+|++.++... . +..... ++++ +|+|+|...
T Consensus 7 eak~lL~~yGIpvp~~~~~~~~--~-------ea~~~a~~lg~----p~~VvK~qv 49 (392)
T PRK14046 7 QAKELLASFGVAVPRGALAYSP--E-------QAVYRARELGG----WHWVVKAQI 49 (392)
T ss_pred HHHHHHHHcCCCCCCceEECCH--H-------HHHHHHHHcCC----CcEEEEeee
Confidence 4678999999999999998762 1 122222 2454 467999854
No 123
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.04 E-value=44 Score=32.61 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=48.3
Q ss_pred eeEEEEeecCcccCChhHHHHHHHhhccCCeEE-EEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHH
Q 001667 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEV-IHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT 78 (1034)
Q Consensus 6 ~~~iGVCAMd~Ka~SkPm~~IL~RL~~~~~fev-iiFgd~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~ 78 (1034)
.-.|++|.++...... +++++++|.+.+.-++ +++|.. +.++.++.|=... +=.||+.|-+.+.++.|.+
T Consensus 51 ~d~V~iS~~~~~~~~~-~~~~~~~L~~~~~~~i~i~~GG~-~~~~~~~~~~~~G-~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 51 VDVIGLSSLSGGHMTL-FPEVIELLRELGAGDILVVGGGI-IPPEDYELLKEMG-VAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCEEEEcccchhhHHH-HHHHHHHHHhcCCCCCEEEEECC-CCHHHHHHHHHCC-CCEEECCCCCHHHHHHHHh
Confidence 3479999998644443 6999999998754344 445543 3455556665555 5578899999999998864
No 124
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=22.74 E-value=28 Score=41.56 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCCCcEEEEec
Q 001667 98 RKVYEQLEKYGIPVPRYALVNR 119 (1034)
Q Consensus 98 ~~vlqiL~~~gIp~P~~~~~~r 119 (1034)
..+.++|++.|||+|+..++..
T Consensus 33 yqaK~LL~~~GIpvp~~~va~t 54 (422)
T PLN00124 33 YQGAELMSKYGVNVPKGAAASS 54 (422)
T ss_pred HHHHHHHHHcCCCCCCceeeCC
Confidence 4578999999999999998876
No 125
>PRK01295 phosphoglyceromutase; Provisional
Probab=21.34 E-value=70 Score=33.98 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.1
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKGL 542 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (1034)
.||||+=.|++-||++++..+
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (206)
T PRK01295 53 IAFTSALSRAQHTCQLILEEL 73 (206)
T ss_pred EEEeCCcHHHHHHHHHHHHHc
Confidence 599999999999999998754
No 126
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=21.22 E-value=70 Score=35.20 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=18.9
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001667 522 KIYSSDEGRVQMSAAAFAKGL 542 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (1034)
.||||+=.|++.||++++..+
T Consensus 51 ~IysSpl~Ra~qTA~~i~~~~ 71 (247)
T PRK14115 51 VAYTSVLKRAIRTLWIVLDEL 71 (247)
T ss_pred EEEEcCCHHHHHHHHHHHHHc
Confidence 699999999999999998654
No 127
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=20.19 E-value=82 Score=35.84 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEeecCCchHHHHHHHHHhhhc
Q 001667 522 KIYSSDEGRVQMSAAAFAKGLL 543 (1034)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~L 543 (1034)
.||||+=.|++.||++++.++.
T Consensus 156 ~IysSPL~RA~qTAeiIa~~~~ 177 (299)
T PTZ00122 156 AIYHSDMTRAKETAEIISEAFP 177 (299)
T ss_pred EEEEcCcHHHHHHHHHHHHhCC
Confidence 5999999999999999987753
Done!