Your job contains 1 sequence.
>001668
MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD
ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSD
KQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKST
QYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVES
QLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHM
QEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDA
LHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLA
NDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRL
WDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLL
SLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKI
RVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHK
QSPLFHTPEEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDEDLGEGKTAAG
VEDDDCRVITEKKVFQHIREKARNFPISTASNNAHSASSEPLILTRKRFYEQRLQLHDEL
DVPEETEGSIFPRATLLNPSSGSTEAELKEHGFNSSLTAAGNLGTINLLDDTGAFSLPKF
FMFEDTVPSQYEECTSKTLTKSTIFEHIRKKSKNFPVFNSNISKTMESDSAIQTNEHFPA
NQSEFCIAASDVTKDANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQNHNIVSGSCCR
TFRKLNLSPIASVAGTAEPSSSIKMLSFDISMMKKQKCSPNTSTRQCCPLPLASTGKTKE
VDSFLGFESVFSFL
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001668
(1034 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2089144 - symbol:RCK "ROCK-N-ROLLERS" species:... 2689 1.5e-315 4
UNIPROTKB|A2PYH4 - symbol:HFM1 "Probable ATP-dependent DN... 999 1.2e-105 3
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica... 1015 9.4e-105 2
UNIPROTKB|E2R5U9 - symbol:HFM1 "Uncharacterized protein" ... 1013 1.3e-104 2
UNIPROTKB|E2RA34 - symbol:HFM1 "Uncharacterized protein" ... 1013 8.8e-104 2
UNIPROTKB|A6NGI5 - symbol:HFM1 "Probable ATP-dependent DN... 999 3.6e-103 2
UNIPROTKB|F1MFR1 - symbol:HFM1 "Uncharacterized protein" ... 1009 1.9e-101 1
UNIPROTKB|F1S4E9 - symbol:HFM1 "Uncharacterized protein" ... 1004 6.9e-101 1
ZFIN|ZDB-GENE-061207-43 - symbol:hfm1 "HFM1, ATP-dependen... 983 5.0e-99 1
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 593 3.9e-60 2
SGD|S000003220 - symbol:HFM1 "Meiosis specific DNA helica... 643 7.6e-60 1
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ... 484 8.1e-46 3
POMBASE|SPBC13G1.10c - symbol:mug81 "ATP-dependent RNA he... 503 1.1e-45 2
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 477 4.6e-44 2
WB|WBGene00013189 - symbol:Y54E2A.4 species:6239 "Caenorh... 466 1.1e-43 2
DICTYBASE|DDB_G0270042 - symbol:ascc3l "U5 small nuclear ... 458 4.7e-42 3
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi... 462 6.6e-42 2
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ... 453 2.5e-41 3
UNIPROTKB|F1NTD6 - symbol:ascc3 "Activating signal cointe... 453 2.5e-41 2
RGD|1307995 - symbol:Ascc3 "activating signal cointegrato... 455 4.0e-41 2
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 439 4.4e-41 2
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co... 447 8.4e-41 2
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat... 462 1.3e-40 4
FB|FBgn0263599 - symbol:l(3)72Ab "lethal (3) 72Ab" specie... 464 1.6e-40 4
MGI|MGI:1925237 - symbol:Ascc3 "activating signal cointeg... 446 2.3e-40 2
UNIPROTKB|E2QVY0 - symbol:ASCC3 "Uncharacterized protein"... 441 2.7e-40 2
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme... 458 3.3e-40 3
UNIPROTKB|Q8N3C0 - symbol:ASCC3 "Activating signal cointe... 445 3.8e-40 2
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 433 4.9e-40 2
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 432 6.2e-40 2
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 456 7.8e-40 3
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 456 7.8e-40 3
UNIPROTKB|F6Y2F0 - symbol:ASCC3 "Uncharacterized protein"... 441 8.0e-40 2
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 434 1.3e-39 2
UNIPROTKB|E1BNG3 - symbol:ascc3 "Activating signal cointe... 440 1.7e-39 2
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 426 2.8e-39 2
POMBASE|SPAC9.03c - symbol:brr2 "U5 snRNP complex subunit... 440 1.8e-38 3
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he... 414 1.2e-37 2
UNIPROTKB|B4E0P5 - symbol:SNRNP200 "U5 small nuclear ribo... 402 1.5e-37 2
ASPGD|ASPL0000030426 - symbol:AN5514 species:162425 "Emer... 428 3.5e-36 1
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ... 423 4.1e-34 2
ASPGD|ASPL0000044033 - symbol:AN2482 species:162425 "Emer... 425 5.4e-34 2
GENEDB_PFALCIPARUM|PF14_0370 - symbol:PF14_0370 "RNA heli... 397 1.5e-32 5
UNIPROTKB|Q8IL78 - symbol:PF14_0370 "DEAD/DEAH box helica... 397 1.5e-32 5
UNIPROTKB|F1SU36 - symbol:SNRNP200 "Uncharacterized prote... 368 6.3e-31 1
UNIPROTKB|H9L351 - symbol:H9L351 "Uncharacterized protein... 351 7.7e-31 1
UNIPROTKB|F1SU44 - symbol:F1SU44 "Uncharacterized protein... 328 1.3e-29 2
GENEDB_PFALCIPARUM|PFD1060w - symbol:PFD1060w "u5 small n... 351 4.8e-24 3
UNIPROTKB|Q8IFP1 - symbol:PFD1060w "U5 small nuclear ribo... 351 4.8e-24 3
UNIPROTKB|I3LAH4 - symbol:I3LAH4 "Uncharacterized protein... 176 1.4e-17 2
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab... 219 2.4e-16 3
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)... 208 2.2e-14 4
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the... 208 1.1e-13 4
UNIPROTKB|F1NMU1 - symbol:POLQ "Uncharacterized protein" ... 198 1.6e-13 3
UNIPROTKB|E1BMC0 - symbol:POLQ "Uncharacterized protein" ... 202 2.4e-13 4
TAIR|locus:2125677 - symbol:AT4G32700 species:3702 "Arabi... 215 2.4e-13 5
UNIPROTKB|O75417 - symbol:POLQ "DNA polymerase theta" spe... 186 4.5e-13 5
UNIPROTKB|F1PXD9 - symbol:POLQ "Uncharacterized protein" ... 195 9.3e-13 4
ZFIN|ZDB-GENE-060503-421 - symbol:helq "helicase, POLQ-li... 195 6.7e-12 3
TAIR|locus:2075566 - symbol:AT3G46960 species:3702 "Arabi... 192 3.2e-11 3
UNIPROTKB|E9PT19 - symbol:Helq "Protein Helq" species:101... 189 4.3e-11 2
UNIPROTKB|F1NYH9 - symbol:HELQ "Uncharacterized protein" ... 201 4.4e-11 2
DICTYBASE|DDB_G0279107 - symbol:DDB_G0279107 "Helicase PO... 172 6.1e-11 4
MGI|MGI:2176740 - symbol:Helq "helicase, POLQ-like" speci... 193 8.8e-11 3
ZFIN|ZDB-GENE-040724-232 - symbol:si:rp71-1p14.5 "si:rp71... 174 2.3e-10 4
UNIPROTKB|J9P160 - symbol:HELQ "Uncharacterized protein" ... 179 2.6e-10 3
UNIPROTKB|E2RST3 - symbol:HELQ "Uncharacterized protein" ... 179 2.9e-10 3
UNIPROTKB|E9PSY5 - symbol:Helq "Protein Helq" species:101... 182 5.0e-10 1
UNIPROTKB|F1RVE2 - symbol:HELQ "Uncharacterized protein" ... 180 9.0e-10 2
WB|WBGene00008502 - symbol:skih-2 species:6239 "Caenorhab... 175 2.0e-09 3
FB|FBgn0002899 - symbol:mus301 "mutagen-sensitive 301" sp... 176 2.5e-09 3
SGD|S000004390 - symbol:SKI2 "Ski complex component and p... 165 2.9e-09 2
GENEDB_PFALCIPARUM|PFF0100w - symbol:PFF0100w "putative A... 202 3.1e-09 3
UNIPROTKB|E3W980 - symbol:HELQ "Helicase POLQ-like" speci... 177 3.2e-09 2
UNIPROTKB|Q8TDG4 - symbol:HELQ "Helicase POLQ-like" speci... 177 3.8e-09 2
UNIPROTKB|E1C287 - symbol:E1C287 "Uncharacterized protein... 108 4.2e-09 2
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso... 170 4.9e-09 2
DICTYBASE|DDB_G0277211 - symbol:DDB_G0277211 "superkiller... 181 1.0e-08 3
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller... 152 1.2e-08 2
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 166 2.0e-08 3
WB|WBGene00012342 - symbol:mtr-4 species:6239 "Caenorhabd... 164 2.3e-08 2
UNIPROTKB|G3MYJ7 - symbol:SKIV2L2 "Uncharacterized protei... 152 2.5e-08 2
UNIPROTKB|F5H7E2 - symbol:SKIV2L2 "Superkiller viralicidi... 155 4.0e-08 2
UNIPROTKB|E2RCI5 - symbol:SKIV2L2 "Uncharacterized protei... 155 5.2e-08 2
UNIPROTKB|P42285 - symbol:SKIV2L2 "Superkiller viralicidi... 155 5.2e-08 2
UNIPROTKB|F1SLL6 - symbol:SKIV2L2 "Uncharacterized protei... 155 5.2e-08 2
UNIPROTKB|G4NH56 - symbol:MGG_03931 "FRQ-interacting RNA ... 149 6.1e-08 2
UNIPROTKB|D4AE49 - symbol:D4AE49 "Uncharacterized protein... 150 8.0e-08 2
UNIPROTKB|F1MJX4 - symbol:SKIV2L2 "Uncharacterized protei... 152 8.2e-08 2
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 165 8.3e-08 3
TAIR|locus:2026001 - symbol:MTR4 "homolog of yeast MTR4" ... 148 1.3e-07 3
UNIPROTKB|F1MAH7 - symbol:F1MAH7 "Uncharacterized protein... 150 2.0e-07 3
FB|FBgn0002905 - symbol:mus308 "mutagen-sensitive 308" sp... 168 2.1e-07 4
WB|WBGene00020964 - symbol:polq-1 species:6239 "Caenorhab... 150 2.4e-07 3
UNIPROTKB|E1BMS0 - symbol:LOC100139548 "Uncharacterized p... 159 2.6e-07 1
UNIPROTKB|E2RSD6 - symbol:SKIV2L "Uncharacterized protein... 159 2.6e-07 1
UNIPROTKB|F1RQW4 - symbol:SKIV2L "Uncharacterized protein... 159 2.6e-07 1
MGI|MGI:1919448 - symbol:Skiv2l2 "superkiller viralicidic... 152 3.9e-07 3
ZFIN|ZDB-GENE-040426-2854 - symbol:skiv2l2 "superkiller v... 152 4.3e-07 2
UNIPROTKB|F5H6Y7 - symbol:SKIV2L "Helicase SKI2W" species... 155 4.5e-07 1
WARNING: Descriptions of 27 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2089144 [details] [associations]
symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
Uniprot:Q5D892
Length = 1133
Score = 2689 (951.6 bits), Expect = 1.5e-315, Sum P(4) = 1.5e-315
Identities = 519/746 (69%), Positives = 613/746 (82%)
Query: 53 KLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLR 112
+L ++DILMQYS+GKSALVFCSTRKGAQEAAQ+L+QTAMTYGYSNPFIK REQ ERLR
Sbjct: 259 RLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFIKSREQLERLR 318
Query: 113 EASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPA 172
EAS CSDKQMQSYIL GVGYHNGGLC KDR+L+EGLFL GD+QV+CTTNTLAHGINLPA
Sbjct: 319 EASPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPA 378
Query: 173 HTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLL 232
HTVVIKSTQ+FNKEKG YME+DRST+LQM GRAGRPPF+DTG VIIMTRRETVHLYENLL
Sbjct: 379 HTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLL 438
Query: 233 NGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVIS 292
NGCE+VESQLL C+ EHLTAEIVQ+T+SDIT+AIEWMKCSYLYVRMKKNP+NY+++K I
Sbjct: 439 NGCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYVRMKKNPENYAIKKGIP 498
Query: 293 RDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTP 352
+DR+EKH+QE+C+QK++ELS +QMIWTD DGF+LKP+EPGRLMTKYYLKF+TMKYI+ TP
Sbjct: 499 KDRVEKHLQELCLQKINELSQYQMIWTDTDGFVLKPEEPGRLMTKYYLKFETMKYIINTP 558
Query: 353 VNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTR 412
+ L++ALH VCHAEEI+WIQLRRNEKK LN +N DK+GRLRFHIN +KGKRKKRIQTR
Sbjct: 559 TSYSLDEALHIVCHAEEISWIQLRRNEKKTLNDVNADKEGRLRFHINDNKGKRKKRIQTR 618
Query: 413 EEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALL 472
EEK+FVLAND L GDPSVHDLS+TQD NSI +NGSRIA+CM++YFI++KNYKG ++S LL
Sbjct: 619 EEKLFVLANDWLTGDPSVHDLSMTQDANSICSNGSRIARCMKEYFIYKKNYKGTLSSTLL 678
Query: 473 AKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFG 532
AKSLYQ+LWDDSPYLLKQLPGIGMVTAKALHSMG++SFE LAEADPRRIEIVTGRKYPFG
Sbjct: 679 AKSLYQKLWDDSPYLLKQLPGIGMVTAKALHSMGVRSFEALAEADPRRIEIVTGRKYPFG 738
Query: 533 NHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENN 592
N IKESL SLPPKV++K+EE+ CQ QG SKL +TL+R+SQ +QSTKRHYAD+IVG+EE N
Sbjct: 739 NTIKESLSSLPPKVEIKVEEVDCQKQGISKLAVTLSRVSQPLQSTKRHYADLIVGSEEEN 798
Query: 593 MVLFHEKIRVDEFSSPYSVTVLSSNP-QQGKLTVKADLIFEEYIGVDIHQKLVLVKESNS 651
++ FHEKIR+++FSSPYSVTVL P QQ K+TVKADLIFEEYIG+D+H+ L+L K +N+
Sbjct: 799 LIHFHEKIRMEDFSSPYSVTVLLERPHQQTKVTVKADLIFEEYIGIDLHETLLLKKANNN 858
Query: 652 NVNRKCGHKQSPLFHTP-EEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDE 710
VN K ++ P ++ P C+ +D+N + P+ D +D MPSF L+D+
Sbjct: 859 KVNYKSENRM-PQYYPPMASACIADDDNPVTSG-PSNRKDK------KDD-MPSFKLIDD 909
Query: 711 DLGEGKTA-AGVEDDDCRVITEKKVFQHIREKARNFPIXXXXXXXXXXXXEPLILTRKRF 769
D E K +E+DDC +I E VF HIREKA+ FP IL RK
Sbjct: 910 DSEEEKEPYVTMEEDDCVIINEHTVFDHIREKAKCFPSLNPLNPTSSPASGKSILKRKSL 969
Query: 770 YEQRLQLHDELDVPEETEGSIFPRAT 795
E ELD P S+F T
Sbjct: 970 VENN---SPELD-PLFQYDSVFDLPT 991
Score = 240 (89.5 bits), Expect = 1.5e-315, Sum P(4) = 1.5e-315
Identities = 50/74 (67%), Positives = 59/74 (79%)
Query: 1 MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD 60
+L+ N E++SS+LASVR LAVSATIPNIED+AEWL VP GIKRFGEEMRPVKLTTKVF
Sbjct: 187 ILSSNHELRSSTLASVRLLAVSATIPNIEDLAEWLKVPTAGIKRFGEEMRPVKLTTKVFG 246
Query: 61 ILMQYSRGKSALVF 74
Y+ K+ +F
Sbjct: 247 ----YAAAKNDFLF 256
Score = 111 (44.1 bits), Expect = 1.5e-315, Sum P(4) = 1.5e-315
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 935 ALDKNANDNKVCTKQNHNIVSGSCCRTFRKLNLSPIASVAGTAEPSSSIKMLSFDISMMK 994
A K N + +++ N S RT+ L +SP + + S ++LSFDISM+K
Sbjct: 1041 ATSKIENPITISSQEGRN-AEISPYRTYGLL-VSPATKIPRITSDAPS-EILSFDISMVK 1097
Query: 995 KQKCSPNTSTRQCCPLPLASTGKTKEVDSFLGFESVFSFL 1034
+ S + C L GK+ DSFLGF+S+FSFL
Sbjct: 1098 RSDTSLEQTKGFCSTL----AGKSNVSDSFLGFKSIFSFL 1133
Score = 71 (30.1 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 830 DDTGAFSLPKFFMFEDTVPS-QYEECTSKTLTKSTIFEHIRKKSKNFPVFNS-NISKTME 887
DD +F L E+ P EE + + T+F+HIR+K+K FP N N + +
Sbjct: 899 DDMPSFKLIDDDSEEEKEPYVTMEEDDCVIINEHTVFDHIREKAKCFPSLNPLNPTSSPA 958
Query: 888 SDSAIQTNEHFPANQS 903
S +I + N S
Sbjct: 959 SGKSILKRKSLVENNS 974
Score = 61 (26.5 bits), Expect = 3.1e-307, Sum P(3) = 3.1e-307
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 855 TSKTLTKSTIFEHIRKKSKNFPVFNSNISKTMESDSAIQTNE 896
T + + TIF +IRK+SKN P + SK +E+ I + E
Sbjct: 1017 TERPFSDETIFNYIRKRSKNSPALAT--SK-IENPITISSQE 1055
Score = 43 (20.2 bits), Expect = 1.5e-315, Sum P(4) = 1.5e-315
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 727 RVITEKKVFQHIREKARNFP 746
R +++ +F +IR++++N P
Sbjct: 1019 RPFSDETIFNYIRKRSKNSP 1038
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 999 (356.7 bits), Expect = 1.2e-105, Sum P(3) = 1.2e-105
Identities = 267/732 (36%), Positives = 406/732 (55%)
Query: 8 MKSSSLA-SVRFLAVSATIPNIEDIAEWLNV---PVQGIKRFGEEMRPVKLTTKV----- 58
+K++S A +RF+AVSATIPN EDIAEWL+ P +K E RPVKL V
Sbjct: 442 LKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLK-MDESHRPVKLQKVVLGFPC 500
Query: 59 --------FD---------ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPF 101
FD ++ YS K LVFC+TRKG Q+AA L + A F
Sbjct: 501 SSNQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDAK-------F 553
Query: 102 IKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161
I EQ++RL++ + S D +++ + G YH+ G+ L DR ++EG F GD+ VL TT
Sbjct: 554 IMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTT 613
Query: 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTR 221
+TLA G+NLPAH VVIKST ++ GL+ E+ + ILQM GRAGRP F+ T T +IMTR
Sbjct: 614 STLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTR 671
Query: 222 RETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKN 281
T Y +L + VES L + EHL AEIV T++D+ A+EW++ + LY+R KN
Sbjct: 672 LSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKN 731
Query: 282 PQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLK 341
P +Y +++D IE +QE+C++ +++LS +I DE G KP E GRLM YY+
Sbjct: 732 PSHYGFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKMDE-GVNFKPTEAGRLMAWYYIT 790
Query: 342 FDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG-RLRFHING 400
F+T+K L D + + +E IQLR NEKK LN +N D + +RF + G
Sbjct: 791 FETVKKFYTISGKETLSDLVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPMEG 850
Query: 401 DKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFR 460
RI+TRE K+ L +G + D +LTQD I +GSRI + + D+ +
Sbjct: 851 -------RIKTREMKVNCLIQ-AQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQ 902
Query: 461 -KNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPR 519
K + +NS +LAK +LW++S ++ KQL IG+ + A+ + G+ SF+ + E D R
Sbjct: 903 EKKFAVLLNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDAR 962
Query: 520 RIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLIT-LTRLSQSVQSTK 578
+E++ R PFG IKE+++ LP K ++K+E+I +++L+T + R + +Q TK
Sbjct: 963 ELELILNRHPPFGTQIKETVMYLP-KYELKVEQITRYSDTTAEILVTVILRNFEQLQ-TK 1020
Query: 579 R-----HYADMIVGAEENNMVLFH---EKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLI 630
R HY +I+G +N +V H + + + S + V + + L++ +LI
Sbjct: 1021 RTASDSHYVTLIIGDADNQVVYLHKITDSVLLKAGSWAKKIAVKRALKSED-LSI--NLI 1077
Query: 631 FEEYIGVDIHQKL-VLVKESNSNVNRKCGHKQSP--LFHTPE-EVCVIEDENE--TAAQT 684
E++G+DI QKL V E N+ ++S + H+ ++ I N+ TA++
Sbjct: 1078 SSEFVGLDIQQKLTVFYLEPKRFGNQITMQRKSETQISHSKHSDISTIAGPNKGTTASKK 1137
Query: 685 PA-QEIDNLLSS 695
P +E ++L S
Sbjct: 1138 PGNRECNHLCKS 1149
Score = 48 (22.0 bits), Expect = 1.2e-105, Sum P(3) = 1.2e-105
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 18 FLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
FL + I I D E L ++ K G+E RP LT+ +
Sbjct: 35 FLPPAPLISEIPDTQE-LEEELESHKLLGQEKRPKMLTSNL 74
Score = 43 (20.2 bits), Expect = 1.2e-105, Sum P(3) = 1.2e-105
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 968 SPIASVAGTAE-PSSSIKMLSFDISMMKKQKCSPNTSTRQCCPLPLASTGKTKE--VDSF 1024
S I+++AG + ++S K + + + + K K +T CC + +A + KE + S+
Sbjct: 1120 SDISTIAGPNKGTTASKKPGNRECNHLCKSK---HTCGHDCCKIGVAQKSEIKESTISSY 1176
Query: 1025 L 1025
L
Sbjct: 1177 L 1177
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 1015 (362.4 bits), Expect = 9.4e-105, Sum P(2) = 9.4e-105
Identities = 260/696 (37%), Positives = 390/696 (56%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNV---PVQGIKRFGEEMRPVKLTT-------- 56
++++S A VRF+AVSATIPN EDIAEWL+ P +K E RPVKL
Sbjct: 173 LENASPAPVRFVAVSATIPNAEDIAEWLSDGERPAVCLK-MDESHRPVKLQKVVLGFPSS 231
Query: 57 --------------KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFI 102
KV+ ++ YS K LVFC+TRKG Q+AA L + A FI
Sbjct: 232 SNQTEFKFDLALNYKVYSVIRTYSDQKPTLVFCATRKGVQQAASVLVKDAK-------FI 284
Query: 103 KDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTN 162
EQ+ RL++++ S D +++ ++YGVGYH+ G+ L DR L+E LF GD+ VL TT+
Sbjct: 285 ITVEQKLRLQKSAYSIRDSKLKDTLVYGVGYHHAGMELSDRKLVEELFTSGDLPVLFTTS 344
Query: 163 TLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR 222
TLA G+NLPAH VVIKST ++ G + E+ + ILQM GRAGRP F+ T T +IMTR
Sbjct: 345 TLAMGVNLPAHLVVIKSTMHYTG--GAFEEYSETDILQMIGRAGRPQFDTTATAVIMTRL 402
Query: 223 ETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNP 282
T Y +L + VES L + EHL AEIV T++D++ A++W++ + LY+R KNP
Sbjct: 403 STREKYVQMLACNDTVESSLHRHLIEHLNAEIVLHTITDVSIALDWIRSTLLYIRALKNP 462
Query: 283 QNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKF 342
+Y +++D IE +QE+C++ + +LS +I DED + E GRLM YY+ F
Sbjct: 463 SHYGFISGLNKDGIEAKLQELCLKNLKDLSSLDLIKMDED-LNFRSTEAGRLMAWYYITF 521
Query: 343 DTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG-RLRFHINGD 401
+T+K L D + + E +QLR +EK+ LN +N D + +RF + G
Sbjct: 522 ETVKKFCAISGKETLSDLISMISSCSEFLDVQLRISEKRTLNTLNKDPNRITIRFPMEG- 580
Query: 402 KGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRK 461
RI+TRE K+ L +G + D +LTQD + I NGSRIAK + D F+ +
Sbjct: 581 ------RIKTREMKVNCLIQ-AQLGCIPIQDFALTQDTSKIFRNGSRIAKWLSD-FVTAQ 632
Query: 462 NYKGAV--NSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPR 519
K AV NS +LAK +LW++S ++ KQL IG+ + + + G+ SF+ + EA+ R
Sbjct: 633 EQKFAVLLNSVILAKCFKCKLWENSQHVSKQLDKIGISLSNTMVNAGLTSFKKIEEANAR 692
Query: 520 RIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKR 579
+E++ R PFG IKE+++ LP K +++ E+I K+++L+T+ + TKR
Sbjct: 693 ELELILNRHPPFGTQIKEAVMYLP-KYELEAEQIARYSDTKAEILVTIILRNFEQLQTKR 751
Query: 580 -----HYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLT--VKADLIFE 632
HYA +I+G +N +V H KI +D V + ++ ++ + +LI
Sbjct: 752 TAPDFHYATLIIGDADNQVVCKH-KI-MDSVLLKSGNWVKKIDVKRALISEDLSINLISS 809
Query: 633 EYIGVDIHQKL-VLVKESNSNVNRKCGHKQSPLFHT 667
+Y+G+DIHQK V VN+ + S H+
Sbjct: 810 DYVGLDIHQKFTVFYLGPRKFVNQTVTERSSGTDHS 845
Score = 42 (19.8 bits), Expect = 9.4e-105, Sum P(2) = 9.4e-105
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 678 NETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDEDLGEGKTAAGVEDDDC 726
N+T + + D+ LS + +S + +++ED+ GKT+ + +C
Sbjct: 832 NQTVTER-SSGTDHSLS--IYSASAKNDQIVEEDVEHGKTSKNPGNREC 877
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 1013 (361.7 bits), Expect = 1.3e-104, Sum P(2) = 1.3e-104
Identities = 250/673 (37%), Positives = 382/673 (56%)
Query: 5 NPEMKSSSLASVRFLAVSATIPNIEDIAEWLNV---PVQGIKRFGEEMRPVKLTTKV--- 58
+P ++S++ +RF+AVSATIPN EDIAEWL+ P +K E+ RPVKL V
Sbjct: 441 SPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLK-MDEKHRPVKLQKVVLGF 499
Query: 59 ----------FDILMQY---------SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSN 99
FD+ + Y S K LVFC+TRKG Q+AA L + A
Sbjct: 500 PCGSNQTEFKFDLTLNYKIAGVIRTYSDQKPTLVFCATRKGVQQAASVLVKDAK------ 553
Query: 100 PFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLC 159
FI EQ++RL++ + S D +++ +++GV YH+ G+ L DR ++EG F GD+ VL
Sbjct: 554 -FIMAVEQKQRLQKYAYSIRDSKLRDILIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLF 612
Query: 160 TTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
TT+TLA G+NLPAH VVIKST ++ G++ E+ + ILQM GRAGRP F+ T T +IM
Sbjct: 613 TTSTLAMGVNLPAHLVVIKSTMHY--AGGMFEEYSETDILQMIGRAGRPQFDTTATAVIM 670
Query: 220 TRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMK 279
TR T Y +L + VES L + EHL AEIV T++D+ A+EW++ + LY+R
Sbjct: 671 TRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRAL 730
Query: 280 KNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYY 339
KNP +Y +++D IE +QE+C++ + +LS +I DED KP E GRLM YY
Sbjct: 731 KNPSHYGFASGLNKDGIEAKLQELCLKNLHDLSSLDLIRMDED-VNFKPTEAGRLMAWYY 789
Query: 340 LKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG-RLRFHI 398
+ F+T+K L D + + +E +QLR NEKK+LN +N D + +RF +
Sbjct: 790 ITFETVKKFCTISGKETLLDLVTMISSCKEFVDVQLRINEKKILNTLNKDPNRVTIRFPM 849
Query: 399 NGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFI 458
G RI+TRE KI L +G + D +LTQD++ I NGSRI + + D+
Sbjct: 850 EG-------RIKTREMKINCLIQ-AQLGCIPIQDFALTQDISKIFRNGSRITRWLSDFVA 901
Query: 459 FRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADP 518
++ + +NS +LAK +LW++S ++ KQL IG+ + A+ + G+ SF+ + E D
Sbjct: 902 VQEKFAILLNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAMVNAGLTSFKKIEETDA 961
Query: 519 RRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLT-RLSQSVQST 577
R +E++ R PFG IKE+++ LP K ++++E+I +++L+T+ R + +Q+
Sbjct: 962 RELELILNRHPPFGTQIKETVMYLP-KYEVEVEQIARYSDTMAEILVTIILRNFEQLQAR 1020
Query: 578 KR----HYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLT-VKADLIFE 632
+ HY +I+G +N +V H KI + T + K + +LI
Sbjct: 1021 RTSPDSHYVTLIIGDADNQLVFKH-KIMDSVLLKAGNWTKKIDVRRAFKSEDLSINLISS 1079
Query: 633 EYIGVDIHQKLVL 645
EY+G+DI QK +
Sbjct: 1080 EYVGLDIQQKFTV 1092
Score = 51 (23.0 bits), Expect = 1.3e-104, Sum P(2) = 1.3e-104
Identities = 56/235 (23%), Positives = 93/235 (39%)
Query: 783 PEETEGSIFPRATLLNPSSGSTEAELKEHGFNSSLTAAGNLGTINLLD-DTGAFSLPKFF 841
P E E F R N S+ S E + FN L A+GN NL D D +
Sbjct: 1251 PSEYEDKDFSR---WNYSATSNEKSPQTVLFNRHLNASGNQ---NLTDGDKSNSPSSEVL 1304
Query: 842 MFEDTVPSQ-YEECTSKTLTKSTIFEHIRKKSKNFPVFNSNISKTMESDSAIQTNEHFPA 900
+ ++ +++ + L + T F +K+K N+ S T S +Q P
Sbjct: 1305 NVNFELGNEVWDDFDDENLLEVTSFSASTEKTKTSGFGNTLSSSTRGSKLLLQE----PK 1360
Query: 901 NQSEFCIAASDVTKDANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQNHNIVSGSCCR 960
++ + + S V+ D L + S + + + +L K N IV +
Sbjct: 1361 SKFQGEMTKSFVSSHGKPDTYLSN-SPVFEFDTSSLTKLPQQ-----AGNTTIVHS---Q 1411
Query: 961 TFRKLNLSP-IASVAGTAE---PSSS--IKMLSFDISMMK-KQKCSPNTSTRQCC 1008
++ NLSP I + T P+SS +K + F I + K++ + S CC
Sbjct: 1412 ERKQQNLSPEIGKLCFTHSKKIPNSSHFVKKVDFFIRNNECKEEIDFSMSIPGCC 1466
Score = 40 (19.1 bits), Expect = 1.9e-103, Sum P(2) = 1.9e-103
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1001 NTSTRQCCPLPLASTGKTKE--VDSFL 1025
+T CC +A +TKE + S+L
Sbjct: 1151 HTCGHDCCKTGVAQKSETKEPTISSYL 1177
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 1013 (361.7 bits), Expect = 8.8e-104, Sum P(2) = 8.8e-104
Identities = 250/673 (37%), Positives = 382/673 (56%)
Query: 5 NPEMKSSSLASVRFLAVSATIPNIEDIAEWLNV---PVQGIKRFGEEMRPVKLTTKV--- 58
+P ++S++ +RF+AVSATIPN EDIAEWL+ P +K E+ RPVKL V
Sbjct: 441 SPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLK-MDEKHRPVKLQKVVLGF 499
Query: 59 ----------FDILMQY---------SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSN 99
FD+ + Y S K LVFC+TRKG Q+AA L + A
Sbjct: 500 PCGSNQTEFKFDLTLNYKIAGVIRTYSDQKPTLVFCATRKGVQQAASVLVKDAK------ 553
Query: 100 PFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLC 159
FI EQ++RL++ + S D +++ +++GV YH+ G+ L DR ++EG F GD+ VL
Sbjct: 554 -FIMAVEQKQRLQKYAYSIRDSKLRDILIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLF 612
Query: 160 TTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
TT+TLA G+NLPAH VVIKST ++ G++ E+ + ILQM GRAGRP F+ T T +IM
Sbjct: 613 TTSTLAMGVNLPAHLVVIKSTMHY--AGGMFEEYSETDILQMIGRAGRPQFDTTATAVIM 670
Query: 220 TRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMK 279
TR T Y +L + VES L + EHL AEIV T++D+ A+EW++ + LY+R
Sbjct: 671 TRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRAL 730
Query: 280 KNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYY 339
KNP +Y +++D IE +QE+C++ + +LS +I DED KP E GRLM YY
Sbjct: 731 KNPSHYGFASGLNKDGIEAKLQELCLKNLHDLSSLDLIRMDED-VNFKPTEAGRLMAWYY 789
Query: 340 LKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG-RLRFHI 398
+ F+T+K L D + + +E +QLR NEKK+LN +N D + +RF +
Sbjct: 790 ITFETVKKFCTISGKETLLDLVTMISSCKEFVDVQLRINEKKILNTLNKDPNRVTIRFPM 849
Query: 399 NGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFI 458
G RI+TRE KI L +G + D +LTQD++ I NGSRI + + D+
Sbjct: 850 EG-------RIKTREMKINCLIQ-AQLGCIPIQDFALTQDISKIFRNGSRITRWLSDFVA 901
Query: 459 FRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADP 518
++ + +NS +LAK +LW++S ++ KQL IG+ + A+ + G+ SF+ + E D
Sbjct: 902 VQEKFAILLNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAMVNAGLTSFKKIEETDA 961
Query: 519 RRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLT-RLSQSVQST 577
R +E++ R PFG IKE+++ LP K ++++E+I +++L+T+ R + +Q+
Sbjct: 962 RELELILNRHPPFGTQIKETVMYLP-KYEVEVEQIARYSDTMAEILVTIILRNFEQLQAR 1020
Query: 578 KR----HYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLT-VKADLIFE 632
+ HY +I+G +N +V H KI + T + K + +LI
Sbjct: 1021 RTSPDSHYVTLIIGDADNQLVFKH-KIMDSVLLKAGNWTKKIDVRRAFKSEDLSINLISS 1079
Query: 633 EYIGVDIHQKLVL 645
EY+G+DI QK +
Sbjct: 1080 EYVGLDIQQKFTV 1092
Score = 40 (19.1 bits), Expect = 8.8e-104, Sum P(2) = 8.8e-104
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1001 NTSTRQCCPLPLASTGKTKE--VDSFL 1025
+T CC +A +TKE + S+L
Sbjct: 1151 HTCGHDCCKTGVAQKSETKEPTISSYL 1177
>UNIPROTKB|A6NGI5 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
Uniprot:A6NGI5
Length = 1114
Score = 999 (356.7 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 267/732 (36%), Positives = 406/732 (55%)
Query: 8 MKSSSLA-SVRFLAVSATIPNIEDIAEWLNV---PVQGIKRFGEEMRPVKLTTKV----- 58
+K++S A +RF+AVSATIPN EDIAEWL+ P +K E RPVKL V
Sbjct: 121 LKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLK-MDESHRPVKLQKVVLGFPC 179
Query: 59 --------FD---------ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPF 101
FD ++ YS K LVFC+TRKG Q+AA L + A F
Sbjct: 180 SSNQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDAK-------F 232
Query: 102 IKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161
I EQ++RL++ + S D +++ + G YH+ G+ L DR ++EG F GD+ VL TT
Sbjct: 233 IMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTT 292
Query: 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTR 221
+TLA G+NLPAH VVIKST ++ GL+ E+ + ILQM GRAGRP F+ T T +IMTR
Sbjct: 293 STLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTR 350
Query: 222 RETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKN 281
T Y +L + VES L + EHL AEIV T++D+ A+EW++ + LY+R KN
Sbjct: 351 LSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKN 410
Query: 282 PQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLK 341
P +Y +++D IE +QE+C++ +++LS +I DE G KP E GRLM YY+
Sbjct: 411 PSHYGFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKMDE-GVNFKPTEAGRLMAWYYIT 469
Query: 342 FDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG-RLRFHING 400
F+T+K L D + + +E IQLR NEKK LN +N D + +RF + G
Sbjct: 470 FETVKKFYTISGKETLSDLVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPMEG 529
Query: 401 DKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFR 460
RI+TRE K+ L +G + D +LTQD I +GSRI + + D+ +
Sbjct: 530 -------RIKTREMKVNCLIQ-AQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQ 581
Query: 461 -KNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPR 519
K + +NS +LAK +LW++S ++ KQL IG+ + A+ + G+ SF+ + E D R
Sbjct: 582 EKKFAVLLNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDAR 641
Query: 520 RIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLIT-LTRLSQSVQSTK 578
+E++ R PFG IKE+++ LP K ++K+E+I +++L+T + R + +Q TK
Sbjct: 642 ELELILNRHPPFGTQIKETVMYLP-KYELKVEQITRYSDTTAEILVTVILRNFEQLQ-TK 699
Query: 579 R-----HYADMIVGAEENNMVLFH---EKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLI 630
R HY +I+G +N +V H + + + S + V + + L++ +LI
Sbjct: 700 RTASDSHYVTLIIGDADNQVVYLHKITDSVLLKAGSWAKKIAVKRALKSED-LSI--NLI 756
Query: 631 FEEYIGVDIHQKL-VLVKESNSNVNRKCGHKQSP--LFHTPE-EVCVIEDENE--TAAQT 684
E++G+DI QKL V E N+ ++S + H+ ++ I N+ TA++
Sbjct: 757 SSEFVGLDIQQKLTVFYLEPKRFGNQITMQRKSETQISHSKHSDISTIAGPNKGTTASKK 816
Query: 685 PA-QEIDNLLSS 695
P +E ++L S
Sbjct: 817 PGNRECNHLCKS 828
Score = 43 (20.2 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 968 SPIASVAGTAE-PSSSIKMLSFDISMMKKQKCSPNTSTRQCCPLPLASTGKTKE--VDSF 1024
S I+++AG + ++S K + + + + K K +T CC + +A + KE + S+
Sbjct: 799 SDISTIAGPNKGTTASKKPGNRECNHLCKSK---HTCGHDCCKIGVAQKSEIKESTISSY 855
Query: 1025 L 1025
L
Sbjct: 856 L 856
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 1009 (360.2 bits), Expect = 1.9e-101, P = 1.9e-101
Identities = 251/674 (37%), Positives = 382/674 (56%)
Query: 10 SSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIK--RFGEEMRPVKLTTKV--------- 58
++S+ +RF+AVSATIPN EDIAEWL+ + + E RPVKL V
Sbjct: 447 TNSIIPMRFVAVSATIPNAEDIAEWLSDGERSAVCLKMDERHRPVKLRKVVLGFPSSDNQ 506
Query: 59 ----FD---------ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR 105
FD I+ YS K LVFC+TRKG Q+AA L + A FI
Sbjct: 507 TEFKFDLTLNYKIASIIQTYSDQKPTLVFCATRKGVQQAASVLVKDAK-------FIMTV 559
Query: 106 EQQERLREASLSCSDKQMQSYIL-YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTL 164
EQ++RL++ + S D +++ IL +GV YH+ G+ L DR ++EG F GD+ VL TT+TL
Sbjct: 560 EQKQRLQKCAYSIKDSKLRVDILIHGVAYHHAGMELSDRKVVEGAFTVGDIPVLFTTSTL 619
Query: 165 AHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224
A G+NLPAH VVIKST ++ G++ E+ + ILQM GRAGRP F+ T T +IMTR T
Sbjct: 620 AMGVNLPAHLVVIKSTMHY--AGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLST 677
Query: 225 VHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQN 284
Y +L + +ES L + EHL AEIV T++++ A+EW++ + LY+R KNP +
Sbjct: 678 KEKYIQMLACSDTIESSLHRHLIEHLNAEIVLHTITNVNIALEWIRSTLLYIRALKNPSH 737
Query: 285 YSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDT 344
Y +++D IE +QE+C++ +++LS +I DED KP E GRLM YY+ F+T
Sbjct: 738 YGFASGLNKDGIESKLQELCLKNLNDLSSLNLIKMDED-INFKPTEAGRLMAWYYITFET 796
Query: 345 MKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGR-LRFHINGDKG 403
+K L D + + +E +QLR NEKK LN +N D + +RF + G
Sbjct: 797 VKKFCTMSGKETLSDLVTMIASCKEFLDVQLRINEKKALNTLNKDPNRTTIRFPMEG--- 853
Query: 404 KRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNY 463
RI+TRE K+ L +G V D +LTQD I NGSRI + + D+ ++ +
Sbjct: 854 ----RIKTREMKVNCLIQ-AQLGCIPVQDFALTQDTAKIFRNGSRITRWLSDFVATQEKF 908
Query: 464 KGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEI 523
+NS +LAK +LW++SP++ KQL IG+ + A+ + G+ SF+ + E D R +E+
Sbjct: 909 AVLLNSLILAKCFRCKLWENSPHVSKQLEKIGITLSNAMVNAGLTSFKKIEETDARELEL 968
Query: 524 VTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLIT-LTRLSQSVQSTKR--- 579
+ R PFG IKE+++ LP K ++++E+I +++L+T + R + +Q TKR
Sbjct: 969 ILNRHPPFGTQIKETVMYLP-KYELEVEQITRYSDTMAEILVTVILRNFEQLQ-TKRTAS 1026
Query: 580 --HYADMIVGAEENNMVLFHE-----KIRVDEFSSPYSVT-VLSSNPQQGKLTVKADLIF 631
HY +I+G +N +V H+ ++ ++ + V L S L++ +LI
Sbjct: 1027 NSHYVTLIIGDADNQLVFKHKIMDSVLLKAGNWAKKFDVRRALKSE----NLSI--NLIS 1080
Query: 632 EEYIGVDIHQKLVL 645
EY+G+DI +K +
Sbjct: 1081 SEYVGLDIQRKFTV 1094
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 1004 (358.5 bits), Expect = 6.9e-101, P = 6.9e-101
Identities = 244/667 (36%), Positives = 377/667 (56%)
Query: 12 SLASVRFLAVSATIPNIEDIAEWLNVPVQGI--KRFGEEMRPVKLTTKV----------- 58
++ +RF+AVSATIPN EDIAEWL+ + + E+ RPVKL V
Sbjct: 449 NIIPMRFVAVSATIPNAEDIAEWLSDGERSAICLKMDEKHRPVKLRKVVLGFPCSNNQTE 508
Query: 59 --FDILMQY---------SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQ 107
FD+ + Y S K LVFC+TRKG Q+AA L + A FI EQ
Sbjct: 509 FKFDLTLNYKIASVVQTYSDQKPTLVFCATRKGVQQAASILVKDAK-------FIMTVEQ 561
Query: 108 QERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
++RL + + S D +++ +++GV YH+ G+ L DR ++EG F GD+ VL TT+TLA G
Sbjct: 562 KQRLHKCAYSIRDSKLRDLLIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMG 621
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227
+NLPAH VVIKST ++ G++ E+ + ILQM GRAGRP F+ T T +IMTR T
Sbjct: 622 VNLPAHLVVIKSTMHY--AGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTKEK 679
Query: 228 YENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV 287
Y +L + VES L + EHL AEIV T++D+ A+EW++ + LY+R KNP +Y
Sbjct: 680 YIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRALKNPSHYGF 739
Query: 288 RKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKY 347
+++D IE +QE+C++ +++LS +I DED KP E GRLM YY+ F+T+K
Sbjct: 740 ASGLNKDGIESKLQELCLKNLNDLSSLDLIKMDED-INFKPTEAGRLMAWYYVTFETVKK 798
Query: 348 IMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG-RLRFHINGDKGKRK 406
L D + + +E +QLR NEKK LN +N D + +RF + G
Sbjct: 799 FCTISGKETLSDLVTMIASCKEFLDVQLRINEKKTLNTLNKDPNRITIRFPMEG------ 852
Query: 407 KRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGA 466
+I+TRE K+ L +G + D +LTQD + I NGSRI + + D+ ++ +
Sbjct: 853 -KIKTREMKVNCLIQ-AQLGCIPIQDFALTQDTSKIFRNGSRITRWLSDFVAVQEKFAVL 910
Query: 467 VNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTG 526
+NS +LAK +LW++S ++ KQL IG+ + A+ + G+ SF+ + E D R +E++
Sbjct: 911 LNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAMVNAGLTSFKKIEETDARELELILN 970
Query: 527 RKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKR-----HY 581
R PFG IKE+++ LP K ++++E+I +++L+T+ + TKR HY
Sbjct: 971 RHPPFGTQIKETVMCLP-KYELEVEQIARYSDTTAEVLVTVILRNFEPLQTKRTAPDSHY 1029
Query: 582 ADMIVGAEENNMVLFHEKIRVDEF---SSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVD 638
+I+G + +N ++F KI +D S ++ + + + + +LI EY+G+D
Sbjct: 1030 VTLIIG-DADNQLIFKHKI-MDSVLLKSGNWAKKIDVKRALKSE-DLSINLISSEYVGLD 1086
Query: 639 IHQKLVL 645
I QK +
Sbjct: 1087 IQQKFTV 1093
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 240/676 (35%), Positives = 382/676 (56%)
Query: 3 ACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNV---PVQGIKRFGEEMRPVKLTTKV- 58
A NPE K ASVRF+AVSATIPNI+D++EWL+ P ++ E RPVKL V
Sbjct: 172 AINPESK----ASVRFVAVSATIPNIQDVSEWLSDESGPATCLE-MDESHRPVKLRKVVL 226
Query: 59 ------------FD---------ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGY 97
FD I+ YS K LVFCSTRKG Q++A L++ A
Sbjct: 227 GFPCGSNQNEFKFDLSLNYKLANIIQTYSDQKPTLVFCSTRKGVQQSASVLAKDAR---- 282
Query: 98 SNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQV 157
FI + ++RL + + S D +++ +YG+GYH+ G+ + DR + E F GD+ V
Sbjct: 283 ---FIMSIDHKQRLVKYANSLLDAKLRDLFVYGIGYHHAGMDVSDRKITENAFTVGDLPV 339
Query: 158 LCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI 217
L TT+TLA G+N+PAH VVIKST ++ G E+ + +LQM GRAGRP F+ T T +
Sbjct: 340 LFTTSTLAMGVNMPAHLVVIKSTMHY--VGGACEEYSEADLLQMIGRAGRPQFDTTATAV 397
Query: 218 IMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVR 277
IMTR +T Y + L+G + +ES L + + EHL AEIV T+SD+ A++W++ ++LY+R
Sbjct: 398 IMTRPQTKDKYMHFLSGLDCIESSLHTNLVEHLNAEIVLHTISDVNMALDWIRSTFLYIR 457
Query: 278 MKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTK 337
KNP++Y + + IE +QE+C++ ++ L+ +I DED +KP E G+LM +
Sbjct: 458 ALKNPKHYGFPPEVDKCGIETKLQELCLKNLNSLASFNLITMDED-INIKPTETGKLMAR 516
Query: 338 YYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGR-LRF 396
Y + FDT+K L + + + A+E + +QLR NE+K LN +N DK+ +RF
Sbjct: 517 YCVAFDTVKQFSMVTGTETLPELIEMISKAKEFSDMQLRVNERKTLNTLNKDKNRTTIRF 576
Query: 397 HINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDY 456
I G +I++ + K+ L +G + + L QD I N R+++ + ++
Sbjct: 577 PIEG-------KIKSNDMKVNCLIQ-AQLGCIPIQEFGLIQDTGKIFRNAVRVSRYLTEF 628
Query: 457 FIF--RKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLA 514
+ N+ +N+ +LAK +LW++SPY+ KQL IG+ A AL + G+ +F +
Sbjct: 629 LCHHSKSNFAAQLNALILAKCFRAKLWENSPYISKQLERIGLSLATALVNAGLTTFSKIE 688
Query: 515 EADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSV 574
+ PR +E++ R PFGN IKE++ LP + ++ +E+I ++++ T+ +
Sbjct: 689 QTSPRELELIVNRHPPFGNQIKEAISKLP-RCEVSLEQIPRYSPSTAEIVFTVNMNNFKE 747
Query: 575 QSTKR-----HYADMIVGAEENNMVLFHEKIRVDEF---SSPYSVTV-LSSNPQQGKLTV 625
+ KR HY +IVG + +N V+F +KI D S +S + ++ +P+ +L++
Sbjct: 748 LALKRTAPDHHYVTLIVG-DCDNKVVFQQKIS-DTLLLKSGSWSKRIEVTRSPKGEELSI 805
Query: 626 KADLIFEEYIGVDIHQ 641
LI EY+G+DI Q
Sbjct: 806 H--LISSEYVGLDIQQ 819
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 593 (213.8 bits), Expect = 3.9e-60, Sum P(2) = 3.9e-60
Identities = 154/511 (30%), Positives = 276/511 (54%)
Query: 53 KLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLR 112
+L TK+ +++ +S+ K +VFC TRK + A++LSQ ++ D++
Sbjct: 473 QLDTKLCEVITTHSQKKPIIVFCFTRKSCELTAKKLSQLWISMA------DDKKPWPGPG 526
Query: 113 EASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPA 172
+ ++ ++ +Q + GV +H+ GL +DR +E +L+G + V+C T+TL+ G+NLP
Sbjct: 527 Q-NMKVTNDGLQQVMQQGVAFHHAGLEQQDRLAVEKAYLEGKLHVICCTSTLSVGVNLPC 585
Query: 173 HTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLL 232
HTV++K T F + G +E+ ++QM GRAGRP F+++ II+TR ET YE +
Sbjct: 586 HTVILKGTMGF--QDGKLLEYSDLEVVQMLGRAGRPQFDNSAVAIILTRSETKARYEAMA 643
Query: 233 NGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVIS 292
+G +++ES L + HL +EI T+ + A EW+K ++L VR+ NP +Y +
Sbjct: 644 SGTQVLESTLHHNLIHHLNSEICLGTIRSLDSAKEWLKSTFLGVRLHANPSHYKIDSQSP 703
Query: 293 RDR---IEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIM 349
+ + + ++C ++++ L ++I D + +L+ GR M++Y ++F+TMK I+
Sbjct: 704 NGEKLHVGRSIDDMCEREINLLQEAKLIRFDNN--VLECTTAGRSMSEYMIRFETMKMIL 761
Query: 350 QTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRI 409
P + D L T+ AEE ++++ NE+ L +N + +R+ + R K I
Sbjct: 762 DMPTGTKIHDILMTLAKAEEFKDLRIKSNERALYRTLN--ESPFIRYQV------RAKDI 813
Query: 410 QTREEKIFVLAN-DCLIGD-PSVH-DLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGA 466
K+F++ D GD PS D S + N + +++ M+ + KGA
Sbjct: 814 TEAWHKVFIIVQLDLGGGDFPSPKSDTSSSVSKNHFNITKRQVSDRMKWLLRCVIDCKGA 873
Query: 467 ------VNSAL-LAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPR 519
VN+AL L +S+ W+ P L Q+PGIG V+ + L + GI + +L EAD
Sbjct: 874 ERDSETVNNALELLRSINAGGWEGLPSQLLQVPGIGPVSMRKLTTHGITNMASLREADYM 933
Query: 520 RIEIVTGRKYPFGNHIKESLLSLPPKVDMKI 550
IE + RK PFG ++ +++ + P K+ +++
Sbjct: 934 AIENILTRKPPFGKNLMDTMKTFP-KLGLEL 963
Score = 110 (43.8 bits), Expect = 3.9e-60, Sum P(2) = 3.9e-60
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 1 MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWL------NVPVQGIKRFGEEMRPVKL 54
+L C MK+ ++++R +A+SAT+PN ED+A+WL N ++ FGEE RPV+L
Sbjct: 398 VLICR--MKTQ-VSNIRVVALSATVPNSEDVAKWLGRGNTDNHQPARLETFGEEFRPVRL 454
Query: 55 TTKVFDI 61
V+ +
Sbjct: 455 QKHVYGL 461
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 643 (231.4 bits), Expect = 7.6e-60, P = 7.6e-60
Identities = 191/647 (29%), Positives = 328/647 (50%)
Query: 15 SVRFLAVSATIPNIEDIAEWL---NVPVQGIKRFGEEMRPVKLT---------------- 55
++RF+A+SAT+PNIED+A WL N I F E R V+LT
Sbjct: 294 NIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSFNCKNDFQK 353
Query: 56 -----TKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQER 110
+K+ +I+ +++ + L+FC TR A +S TA ++ F K +++
Sbjct: 354 DAIYNSKLIEIIEKHADNRPVLIFCPTR------ASTIS-TAKFLLNNHIFSKSKKR--- 403
Query: 111 LREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINL 170
+ + SDK + + G+ +H+ G+ L+DR +E FL G + +LC+T+TLA G+NL
Sbjct: 404 ---CNHNPSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNL 460
Query: 171 PAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYEN 230
PA+ V+IK T+ +N + E+ +LQM GRAGRP F G +IMT + YEN
Sbjct: 461 PAYLVIIKGTKSWNSSE--IQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYEN 518
Query: 231 LLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYS-VRK 289
L++G +++ES L + EHL AE TV I A+ W++ ++ YVR KNP Y V +
Sbjct: 519 LIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPAAYQEVNR 578
Query: 290 VISRDRIE-KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYI 348
+S +E + + C +D L ++I D K G MT++Y+ F++MK
Sbjct: 579 YVSFHSVEDSQINQFCQYLLDTLVKVKII--DISNGEYKSTAYGNAMTRHYISFESMKQF 636
Query: 349 MQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKR 408
+ L+ L+ + +EE + +++R NEKKL IN+ L++ +K K+ +
Sbjct: 637 INAKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSP--LLKYPFLTEK-KQSQI 693
Query: 409 IQTREEKIFVLANDCLIG--DPSVHDLS-----LTQDMNSISTNGSRIAKCMRDYFIFRK 461
I +K+ +L L G PS S L QD + + R+ KCM D FI +
Sbjct: 694 IDRVSQKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFRLLKCMVDTFIEKS 753
Query: 462 NYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI 521
+ N+ L +SL W+++P +L+QL IG+V+ + L GI + E + +I
Sbjct: 754 DGTSLKNTLFLLRSLNGHCWENTPMVLRQLKTIGLVSVRRLIRHGITNLEEMGHLSDTQI 813
Query: 522 EIVTGRKYPFGNHIK-ESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRH 580
E K GN IK ++ +SL P ++++ + C+ + + L +S + +S+ H
Sbjct: 814 EYYLNLK--IGNGIKIKNDISLLPCLNIRTKLENCKIENEELWLTFKVEISATFKSSIWH 871
Query: 581 --YADMIVGAEENNMVLFH-EKIRVDEFSSPYSVTVLSS-NPQQGKL 623
+ + + E+++ L +++V++ SP + + +P+ K+
Sbjct: 872 GQHLSLDIETEKSSGELIDFRRLQVNKLQSPRGFRISAKISPKLEKI 918
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 484 (175.4 bits), Expect = 8.1e-46, Sum P(3) = 8.1e-46
Identities = 172/682 (25%), Positives = 321/682 (47%)
Query: 18 FLAVSATIPNIEDIAEWLNVPVQ----GIK-RFGEEMRPVKLTTKVFDILMQY-SRGKSA 71
FL V+ ++ + VP+Q G++ + G ++ + ++ L Y ++G
Sbjct: 447 FLGVNRSVGMFYFDQSFRPVPLQQQILGVRGKAGSKLARENIDKVSYEKLADYINQGLQV 506
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPF-IKDREQQERL-REASLSCSDKQMQSYILY 129
+VF +RK A+ + A+ YG S F + + E+ REAS K+++ ++
Sbjct: 507 MVFVHSRKDTVNTARTFIRMAVEYGESEIFNCSEADSYEKYKREASNKNRSKELKELFVH 566
Query: 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL 189
G G H+ G+ DRNL E +F G ++VLC T TLA G+NLPA V++K TQ ++ + G
Sbjct: 567 GFGVHHAGMLRSDRNLTEKMFESGAIKVLCCTATLAWGVNLPAAVVIVKGTQVYDSKAGG 626
Query: 190 YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEH 249
+++ S ++Q+ GRAGRP + GT I+ T + + Y +LL +ES+ + ++
Sbjct: 627 FVDLGISDVIQIFGRAGRPQYEKFGTGILCTTSDKLDHYVSLLTQQHPIESKFGDKLIDN 686
Query: 250 LTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVR-KVISRD-RIEKHMQEVCVQK 307
L AEI TV+++ +A++W+ +Y+ VRMK+NP Y + K + D + +E+
Sbjct: 687 LNAEISLGTVTNVEEAVQWLGYTYMMVRMKQNPFAYGIDWKELQEDPSLTNRRREMVFTC 746
Query: 308 VDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLE-DALHTVCH 366
L QMI DE+ P++ GR+ + +YL ++++ Q E D L +
Sbjct: 747 AKRLHHLQMIIFDENSEAFTPKDLGRIASDFYLLSNSVEIFNQMMNPLATEADILSMISM 806
Query: 367 AEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIG 426
+ E I+ R E K L + +++D + + GD + + + K +L +
Sbjct: 807 SSEFDSIKFREEESKELKQL-VEEDAPCQ--VAGD-------VDSPQGKTNILLQ-AFVS 855
Query: 427 DPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYK-GAVNSALLA--KSLYQRLWD- 482
+ D +L D N ++ N +RI C R F+ N + G + + +L+ KS+ +R+W
Sbjct: 856 QAHIKDSALISDSNYVAQNSARI--C-RSLFLIAMNRRWGKLMNIMLSLCKSIDKRIWAF 912
Query: 483 DSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVT-GRKYPFGNHIKESLLS 541
+ P +LP L ++ K+ LA D E+ + G+ I L+
Sbjct: 913 EHPMTQFELP------QPVLRNIKAKNPSMLALRDMEAGELGDLVHNFKMGS-ILYKLIG 965
Query: 542 LPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRH----YADMIVGAEENNMVLFH 597
P +D++ E + + + + V K H + + V + + +L
Sbjct: 966 KFPFIDIESEIFPIT---TNVMRVHVDLQPDFVWDDKYHGSAQFFWLTVEESDRSEILHV 1022
Query: 598 EK--IRVDEFSSPYSVTVLS--SNPQQGKLTVKADLIFEEYIGVD-IHQKLV--LVKESN 650
EK + + SP+ + + S+P ++ V+ ++ + +IG + +H L++ SN
Sbjct: 1023 EKFILHKKQLHSPHEMDFMIPLSDPLPAQVVVR--VVSDSWIGSETVHAVSFQHLIRPSN 1080
Query: 651 SNVNRKCGHKQS-PL--FHTPE 669
+ H Q P+ H P+
Sbjct: 1081 ETIKTDLLHLQPLPVTALHNPD 1102
Score = 404 (147.3 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 143/552 (25%), Positives = 252/552 (45%)
Query: 37 VPVQG-IKRFGEEMR--PVKLTTK--VFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQT 91
VP+Q I F E + P+ T F + Q+S K L+F ++R+ + A L
Sbjct: 1306 VPLQMYIDGFPENLAFCPLMKTMNKPAFMAIKQHSPNKPVLIFVASRRQTRLTALDLIHL 1365
Query: 92 AMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFL 151
F+K + + L++ + D ++ + +G+G H+ GL DR + LF
Sbjct: 1366 CGMESNPRRFLKISDDE--LQDILENVKDDTLRLSLQFGMGLHHAGLVESDRQISHKLFE 1423
Query: 152 KGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFN 211
+G +Q+L T+TLA G+NLPAH V+IK TQ+F+ + Y + D + ILQM GRAGRP ++
Sbjct: 1424 QGKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEAYRDMDLTDILQMMGRAGRPAYD 1483
Query: 212 DTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKC 271
+G I+ T+ Y++ LN VES L + H+ AEI T++ +A++++
Sbjct: 1484 TSGIAIVYTKESKKVFYKHFLNLGFPVESSLHKVLDNHIGAEISAGTITTRQEAMDFLTW 1543
Query: 272 SYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTD-EDGFLLKPQE 330
++LY R NP Y + IS+ I +++ ++ ++ L + ++T D P
Sbjct: 1544 TFLYRRAHNNPTYYGIED-ISQYGISQYLAKLIDSTIENLVESKCVYTGGSDELHATPFL 1602
Query: 331 PGRLMTKYYLKFDTMK-YIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINID 389
+ + YYL TM+ ++ + D L +C A E + R E+ +IN++
Sbjct: 1603 --EISSYYYLSHLTMRNFVNNVTPDFEFRDCLRVLCQATEYNELATRHGEE----LINME 1656
Query: 390 KDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRI 449
+R+ + + I K ++L + + QD S+ RI
Sbjct: 1657 MSQAMRYPA---EDLNCEFIWDPHVKAYLLIQ-AYMSRVELPIADYAQDTISVLDQALRI 1712
Query: 450 AKCMRDYFIFRKNYKGAVNSALLAKSLYQRLW-DDSPYLLKQLPGIGMV-------TAKA 501
+ D +K ++ L + + QR W DD P + LPG+ ++ T K
Sbjct: 1713 LQAYIDAAAELGYFKVVMSFIQLMQCIKQRYWYDDDP--VSALPGLKLISEGKTNQTLKQ 1770
Query: 502 LHSMGIKSFETLAEADPRRIEIVTGRK--YPFGNH-----IKESLLSLPPKVDMKIEEIK 554
L SM LA+ + E + ++ Y +G+ K+ + + + EIK
Sbjct: 1771 LGSMKPGQLFGLAKKLGVKGENIENKETNYDYGDGDSDEMAKKQFVKIASHLPTGNLEIK 1830
Query: 555 CQGQGKSKLLIT 566
Q Q K+++T
Sbjct: 1831 QQEQDSIKVVLT 1842
Score = 79 (32.9 bits), Expect = 8.1e-46, Sum P(3) = 8.1e-46
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKLTTKVFDI 61
S+ + +R + +SAT+PN D+A++L V G+ F + RPV L ++ +
Sbjct: 424 STQSMIRVVGLSATLPNYMDVADFLGVNRSVGMFYFDQSFRPVPLQQQILGV 475
Score = 72 (30.4 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+ S + +R L +S + N D+A WL V G+ F + +RPV L
Sbjct: 1263 ISSQTKKPIRLLGMSTAVSNAFDMAGWLGVK-NGLFNFPQSVRPVPL 1308
Score = 63 (27.2 bits), Expect = 8.1e-46, Sum P(3) = 8.1e-46
Identities = 39/181 (21%), Positives = 76/181 (41%)
Query: 765 TRKRFYEQRLQLHDELDVPEETEGSIFPR-ATLLNPSSGSTEAELKEHGFNSSLTAAGNL 823
TRK + L + DE+ + G I + +N S T+ ++ G +++++ A ++
Sbjct: 1227 TRKFVQQVSLVIMDEIHLLASDRGPILEMIVSRMNYISSQTKKPIRLLGMSTAVSNAFDM 1286
Query: 824 -GTINLLDDTGAFSLPKFF------MFEDTVPSQYEECT-SKTLTKSTIFEHIRKKSKNF 875
G + + + G F+ P+ M+ D P C KT+ K F I++ S N
Sbjct: 1287 AGWLGVKN--GLFNFPQSVRPVPLQMYIDGFPENLAFCPLMKTMNKPA-FMAIKQHSPNK 1343
Query: 876 PVFNSNISKTMESDSAIQTNE--HFPANQSEFCIAASDVTKDANSDAVLRDGSTISDMEF 933
PV S+ +A+ +N F + D +D + ++D + ++F
Sbjct: 1344 PVLIFVASRRQTRLTALDLIHLCGMESNPRRFLKISDDELQDILEN--VKDDTLRLSLQF 1401
Query: 934 G 934
G
Sbjct: 1402 G 1402
>POMBASE|SPBC13G1.10c [details] [associations]
symbol:mug81 "ATP-dependent RNA helicase Slh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
cytoplasmic translation" evidence=ISS] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
Length = 1935
Score = 503 (182.1 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 155/600 (25%), Positives = 304/600 (50%)
Query: 59 FD-ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQER--LREAS 115
FD +L G ++F +RK +A++L + G ++ + D Q E+ L +
Sbjct: 514 FDKVLKLIQEGHQVMIFVHSRKETINSAKKLREQFFHEGEAD--LLDNSQHEKYSLAQRD 571
Query: 116 LSCS-DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHT 174
+S S +K+++ Y +G HN G+ DR+L E LF G +++LC T TLA G+NLPA+
Sbjct: 572 VSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYA 631
Query: 175 VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNG 234
V+IK TQ ++ +KG +++ +LQ+ GRAGRP F + I+T + + Y +++
Sbjct: 632 VLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQ 691
Query: 235 CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVR--KVIS 292
+ES+ + ++L AE+ TV++I +A+ W+ +YLY+RM++NP Y + +++
Sbjct: 692 QSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVE 751
Query: 293 RDRIEKHMQEVCVQKVDELSCHQMI-WTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQT 351
+ +E+ L+ +QMI + ++G+L+ P++ GR+ + YY+ + T+ +
Sbjct: 752 DPLLGSKRRELVSVAAGRLADNQMIVYNKKNGYLI-PKDLGRIASNYYINYQTVSTLNNL 810
Query: 352 PVNCGLE-DALHTVCHAEEIAWIQLRRNE-KKLLNVINIDKDGRLRFHINGDKGKRKKRI 409
+ E D + + E + I+ R NE ++L +++ +LR I+ GK +
Sbjct: 811 LKSKMSEADIIALLSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVIL 870
Query: 410 QTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNS 469
Q+ I V D +LT D N ++ N RI + + + + R + A
Sbjct: 871 QS------------YISRAHVEDFTLTSDTNYVAQNAGRITRALFEIAMSR-TWASAFTI 917
Query: 470 ALLAKSLYQRLWD-DSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI-EIVTGR 527
L KS+ +R W + P L LP + K + G S E L++ + +++ R
Sbjct: 918 LSLNKSIDRRQWSFEHPLLQFDLPHD--LAVKVENQCGSLSLEELSDMSTGELGDLIHNR 975
Query: 528 KYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYAD--MI 585
K G +K+ + LP +++ ++ + K+ L + L ++ + R++ + M
Sbjct: 976 K--MGPTVKKFISKLP-LLNINVDLLPLT---KNVLRLVLN-ITPNFNWDMRYHGNSQMF 1028
Query: 586 -VGAEENN--MVLFHEKIRVDE--FSSPY--SVTVLSSNPQQGKLTVKADLIFEEYIGVD 638
+ E++N +L HE++ +++ S+ + S T+ SNP +L + A + ++++G +
Sbjct: 1029 WIFVEDSNGLEILHHEQLLLNKRNVSTSHLLSFTIPVSNPLPSQLYIIA--VSDKWLGAE 1086
Score = 418 (152.2 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 121/404 (29%), Positives = 201/404 (49%)
Query: 10 SSSLASVRFLAVSATIPNIEDIAEWLN--------------VPVQ-GIKRF-GEEMRP-- 51
S + VR L +S + N D+A WLN VP++ I F G P
Sbjct: 1286 SQTNKKVRVLGLSTAVANANDLANWLNIRDGLFNFRHSVRPVPLEIYIDGFPGRAYCPRM 1345
Query: 52 VKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNP--FI-KDREQQ 108
+ + F + +S + L+F S+R+ + A+ L A NP F+ D E+
Sbjct: 1346 MSMNKPAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDL--IAFCGLEDNPRRFLYMDEEEL 1403
Query: 109 ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
E + DK ++ + +G+ H+ GL DR + E LF+ VQ+L T+TLA G+
Sbjct: 1404 EMIVS---EVEDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGV 1460
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228
N PAH V++K T+Y++ + G Y + D + +LQM GRAGRP F+++G I + Y
Sbjct: 1461 NTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFY 1520
Query: 229 ENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVR 288
++ L+ VES L + HL AEI T+ I A++++ C+Y Y R+ +NP Y
Sbjct: 1521 KHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYYGAD 1580
Query: 289 KVISRDRIEKHMQEVCVQKVDELSCHQMIW-TDEDGFLLKPQEPGRLMTKYYLKFDTMK- 346
+ I+ ++ ++ V +EL I+ +E+ + P GR+++ YYL T++
Sbjct: 1581 GDDQKS-IDTYLSKLVVTAFNELEKSACIYRVNEETYA--PTTLGRIVSYYYLFHTTIRN 1637
Query: 347 YIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDK 390
++ + N + AL + A E + +R NE L+N I I+K
Sbjct: 1638 FVQKITENAEFDLALQLLAEASEFDDLAIRHNED-LIN-IEINK 1679
Score = 71 (30.1 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 1 MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVP-VQGIKRFGEEMRP 51
++A + +S +R + +SAT+PN D+A++L V +G+ F RP
Sbjct: 437 LVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRP 488
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 477 (173.0 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 159/579 (27%), Positives = 273/579 (47%)
Query: 68 GK-SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK-DREQQERLREASLSCSDKQMQS 125
GK L+F +RK + A+ + TAM + F+K D ++ L + ++
Sbjct: 741 GKHQVLIFVHSRKETSKTARAIRDTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLKD 800
Query: 126 YILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNK 185
+ YG H+ GL DR ++E LF +G VQVL +T TLA G+NLPAHTV+IK TQ +N
Sbjct: 801 ILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNP 860
Query: 186 EKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSC 245
EKG +ME ++QM GRAGRP ++ G II+T + Y +L+N +ESQ +S
Sbjct: 861 EKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQYYLSLMNEQLPIESQFISK 920
Query: 246 VTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRK-VISRDRI-EKHMQEV 303
+ + L AEIV TV + +A W+ +YLY+RM +NP Y + +++D + E+ ++
Sbjct: 921 LADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKDVVLEERRADL 980
Query: 304 CVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLEDALH 362
L + ++ D + + GR+ + YY+ T+ Y G D
Sbjct: 981 IHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMGDIDLYR 1040
Query: 363 TVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLAND 422
++E ++ +R++EK L + +D R+ I K+ ++ KI VL
Sbjct: 1041 LFSLSDEFKYVTVRQDEKMELAKL-LD---RVPIPI-------KETLEEPSAKINVLLQ- 1088
Query: 423 CLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAKSLYQRLW 481
I + LSLT DM I+ + R+ + + + + ++ + AL L+K + +R+W
Sbjct: 1089 AYISQLKLEGLSLTSDMVYITQSAGRLVRALYE-IVLKRGWAQLAEKALNLSKMVGKRMW 1147
Query: 482 D-DSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI-EIVTGRKYPFGNHIKESL 539
+P L+Q G+ L + +E + + + E++ K G + + +
Sbjct: 1148 SVQTP--LRQFHGLSNDILMQLEKKDLV-WERYYDLSAQELGELIRSPK--MGKPLHKFI 1202
Query: 540 LSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRH-YAD---MIVGAEENNMVL 595
P KV + Q ++ L + LT + K H Y + +IV + +L
Sbjct: 1203 HQFP-KVTLSAH---VQPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEKIL 1258
Query: 596 FHE-----KIRVDE-FSSPYSVTVLSSNPQQGKLTVKAD 628
HE K +DE + ++V + P Q + V +D
Sbjct: 1259 HHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSD 1297
Score = 340 (124.7 bits), Expect = 3.0e-29, Sum P(2) = 3.0e-29
Identities = 118/487 (24%), Positives = 215/487 (44%)
Query: 35 LNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKS-ALVFCSTRKGAQEAAQQLSQTAM 93
L + +QG+ E R +T + ++Q+++ K A+VF TRK + A L M
Sbjct: 1548 LEIHIQGVDISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDL----M 1603
Query: 94 TYGY-SNPFIKD--REQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF 150
Y + NP D + E L ++ ++ + +G+GY + GL D+ ++ LF
Sbjct: 1604 AYSHMDNPQSPDFLLGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLF 1663
Query: 151 LKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPF 210
G +QV +++L G L AH VV+ TQY++ + + ++ +LQM GRA RP
Sbjct: 1664 EAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLL 1723
Query: 211 NDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMK 270
++ G +I Y+ L VESQL + ++ AE+V + + A++++
Sbjct: 1724 DNAGKCVIFCHAPRKEYYKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLT 1783
Query: 271 CSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQE 330
+++Y R+ +NP Y+++ V R + H+ E+ + +L + I ED L P
Sbjct: 1784 WTFMYRRLPQNPNYYNLQGVSHR-HLSDHLSELVENTLSDLEASKCIEV-EDEMELSPLN 1841
Query: 331 PGRLMTKYYLKFDTM-KYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLN-VINI 388
G + + YY+ + T+ ++ ++ L + A E I +R E+ + +IN
Sbjct: 1842 LGMIASYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRLIN- 1900
Query: 389 DKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDL--SLTQDMNSISTNG 446
RF K V AN L S ++ +L D + +
Sbjct: 1901 ----HQRFSFENPKCTDPH----------VKANALLQAHFSRQNIGGNLAMDQRDVLLSA 1946
Query: 447 SRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMG 506
+R+ + M D A+ + +++ + Q +W+ LL QLP AK
Sbjct: 1947 TRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGMWERDSMLL-QLPHFTKDLAKRCQENP 2005
Query: 507 IKSFETL 513
K+ ET+
Sbjct: 2006 GKNIETV 2012
Score = 84 (34.6 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKL 54
++R + +SAT+PN ED+A +L V ++ G+ +F RPV L
Sbjct: 669 NIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPL 709
Score = 78 (32.5 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+ S + +R +A+S ++ N +D+ EW+ G+ F +RPV L
Sbjct: 1502 ISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPL 1548
Score = 38 (18.4 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 33 EWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQ 87
E L + +G R E+ + L + F ++ R + +V+C+ A++ ++
Sbjct: 302 ELLKILAEGDDRVVEDKLLMHLQYEKFSLVKFLLRNRLKVVWCTRLARAEDQEER 356
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 466 (169.1 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 138/482 (28%), Positives = 237/482 (49%)
Query: 26 PNIEDIAEWLNVPVQGIKRFGEEMRP-VKLTTK-VFDILMQYSRGKSALVFCSTRKGAQE 83
P++ + ++V +QG G+ P + L K + ++ YS K L+F S+R+ +
Sbjct: 1371 PSVRPVP--ISVHIQGFP--GQHYCPRMGLMNKPAYKAILTYSPRKPVLIFVSSRRQTRL 1426
Query: 84 AAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143
A L+ + NP L + + D+ ++ + +G+G H+ GL +R
Sbjct: 1427 TA--LAFVNLLIADHNPKQWLNMDMLELEDLMAAIKDENLKLTLPFGIGMHHAGLSAHER 1484
Query: 144 NLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCG 203
++E LF++ +QVL T TLA GIN PAH V++K T+YF+ +KG Y++ + +LQM G
Sbjct: 1485 AIVEQLFIEKKIQVLIATATLAWGINCPAHLVIVKGTEYFDGKKGKYVDFPVTDVLQMMG 1544
Query: 204 RAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDIT 263
RAGRP F+D+ +I + Y+ L VES LL + H+ AEI T+ D
Sbjct: 1545 RAGRPQFDDSAVAVIYVQDAKKTFYKKFLYEPFPVESSLLPVLPNHVNAEISAGTI-DSK 1603
Query: 264 QAI-EWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDED 322
QAI E++ +YLY R+ NP Y + + S + + K + ++ V EL + I D +
Sbjct: 1604 QAIVEYLSKTYLYRRLFANPNYYGLEED-SEEAMLKFITKIVDDSVAELLASECIHVDSE 1662
Query: 323 GFLLKPQEPGRLMTKYYLKFDTMKYIMQT-PVNCGLEDALHTVCHAEEIAWIQLRRNEKK 381
++KP GR+ + YYL+ +T+++++++ C +E+ L + E A I +R NE
Sbjct: 1663 QDVIKPTPCGRIASVYYLQHETVRFLVKSLHSGCSVENMLKILTDVPEYAEIPVRHNED- 1721
Query: 382 LLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNS 441
L+N + K R+RF + + T K +L + +V D+ S
Sbjct: 1722 LINT-ELQKKLRIRFSTSV--------MGTSACKAHLLFQAHFMR--TVLPTDYRTDLKS 1770
Query: 442 ISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLW-DDSPYLLKQLPGIGMVTAK 500
+ RI + MR+ + +N LL + + W DD P L LP + A+
Sbjct: 1771 VLDQCIRILQAMREMARLKNWLSATMNIILLQQMCHSARWHDDHPLLC--LPHLSHEDAR 1828
Query: 501 AL 502
++
Sbjct: 1829 SI 1830
Score = 449 (163.1 bits), Expect = 2.9e-41, Sum P(3) = 2.9e-41
Identities = 128/453 (28%), Positives = 224/453 (49%)
Query: 41 GIKRFGEEMRPVKLTTKV-FDILMQY-SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYS 98
G ++ G + L V +D ++ + RG LVF TR G + + A G
Sbjct: 523 GTRKAGNFRDNLTLMDNVCYDEVVDFVKRGHQVLVFVHTRNGTAKLGEAFCARASVLGQM 582
Query: 99 NPFI-KDREQQERLR-EASLS-CSDK-QMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGD 154
+ F+ KDR + ++ + +++ C ++ Q+ G+G H+ GLC +DR L+E F +G
Sbjct: 583 DLFLPKDRASSKYIQADKAINICRNRAQISPLFQRGMGIHHAGLCRQDRILMERCFAEGH 642
Query: 155 VQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTG 214
V VL T TLA G+NLPAH VVIK T F+ EKG++ + + Q+ GRAGRP F + G
Sbjct: 643 VSVLFCTATLAWGVNLPAHAVVIKGTDVFDAEKGVFTDLGVLDVQQIFGRAGRPQFENEG 702
Query: 215 TVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYL 274
II+T R+ + Y +L +ESQ + + ++L AE+ TVS + + +EW+ +Y+
Sbjct: 703 HGIIITTRDKIDKYLTMLVHQNPIESQFYARLHDNLNAEVALGTVSTVDEGVEWLTYTYM 762
Query: 275 YVRMKKNPQNYSVR-KVISRD-RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPG 332
Y R KNP Y + I RD + H V + +L ++MI D L + G
Sbjct: 763 YTRALKNPMAYGIAYNAIERDPNLRDHFGNVIREAAMQLDQNKMIRFDMATEYLNSTDLG 822
Query: 333 RLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKD- 391
R+ + +Y+K++T++ + + GL T +++ I L + N+ +++
Sbjct: 823 RIASNFYVKYETIQLLNEAEKGVGLP-VTFTSFMPDDMV-IGLISMSTEFANLKCREEEI 880
Query: 392 GRLRFHINGD--KGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRI 449
G L ++ R + + K+ VL LI S + +L + + N R+
Sbjct: 881 GDLEELMSYGCMMNVRGGGLASVAGKVNVLLQS-LISRTSTRNSALMSEQLYVQQNAGRL 939
Query: 450 AKCMRDYFIFRKNYKGAVNSAL-LAKSLYQRLW 481
+ M + + + + A N+ L +AK + +++W
Sbjct: 940 CRAMFE-MVLKNGWSQAANAFLGIAKCVEKQMW 971
Score = 91 (37.1 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 12 SLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTK 57
S + +R + +SAT+PN D+A +L V P +G+ F RPV LT K
Sbjct: 474 SQSGIRIVGLSATLPNFIDVARFLRVNPYKGLFFFDGRFRPVPLTQK 520
Score = 45 (20.9 bits), Expect = 2.9e-41, Sum P(3) = 2.9e-41
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 843 FEDT-VPSQYEECTSKTLTKSTIFEHIRKKSKNFPVF----NSNISK-TMESDSAI 892
F+D+ V Y + KT K ++E +S PV N+ IS T++S AI
Sbjct: 1551 FDDSAVAVIYVQDAKKTFYKKFLYEPFPVESSLLPVLPNHVNAEISAGTIDSKQAI 1606
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 458 (166.3 bits), Expect = 4.7e-42, Sum P(3) = 4.7e-42
Identities = 143/496 (28%), Positives = 242/496 (48%)
Query: 33 EWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTA 92
+++ + +GIK+ + + T KV + + + L+F +R+ + + L A
Sbjct: 759 QYIGISDRGIKQL-QRCNDITFT-KVSERVGDHQ----ILIFVHSRRETAKTGKDLRDRA 812
Query: 93 MTYGYSNPFIKDREQQERLRE-ASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFL 151
+ + +I+D +E LR AS + +++ + YG+G H+ GL DR+L+E LF
Sbjct: 813 VEDQSIDRYIRDPASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFG 872
Query: 152 KGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFN 211
+QVL +T TLA G+NLPAHTV+IK TQ +N EKG + E + QM GRAGRPPF+
Sbjct: 873 DNRIQVLISTATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFD 931
Query: 212 DTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKC 271
G II+T + + Y +LLN +ESQ +S + ++L AEIV ++ + A+ W+
Sbjct: 932 KEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGY 991
Query: 272 SYLYVRMKKNPQNYSVR-KVISRDRI-EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQ 329
+YLY+ M +NP Y + +D + E+ ++ L + +I D L+
Sbjct: 992 TYLYICMIRNPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQST 1051
Query: 330 EPGRLMTKYYLKFDTMKYIMQTPVNCGLEDA--LHTVCHAEEIAWIQLRRNEKKLLNVIN 387
E G++ + YY+ +M I Q + + D L + E + +R EK L +
Sbjct: 1052 ELGKVASHYYITNSSMS-IYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKL- 1109
Query: 388 IDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGS 447
++ R+ I K+ I+ KI VL I + + +L DM I+ + S
Sbjct: 1110 LE---RVPIPI-------KENIEEPSSKINVLLQT-YISNLKLDGFALVVDMFYIAQSAS 1158
Query: 448 RIAKCMRDYFIFRKNYKGAVNSAL-LAKSLYQRLWDD-SPYLLKQLPGIGMVTAKALHSM 505
RI + + + + +K + L LAK + ++W SP L+Q I L
Sbjct: 1159 RITRALFE-IVLKKGWAQLAKKILNLAKMIDSKMWSSQSP--LRQFHKISPKVLNQLERR 1215
Query: 506 GIKSFETLAEADPRRI 521
GI E L E + +++
Sbjct: 1216 GIP-IEDLYEYNSQQL 1230
Score = 355 (130.0 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 139/567 (24%), Positives = 261/567 (46%)
Query: 10 SSSLASVRFLA--VSATI-------PNIEDIAEWLNVPVQGIK--RFGEEMRPVKLTTKV 58
SSS+A+ R L + AT PN+ I + +QG + F M + T V
Sbjct: 1563 SSSIANARDLVLWIGATPQTCYNFHPNVRPIP--VEYQIQGFEFPHFNARMLAMTKPT-V 1619
Query: 59 FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYG--YSNPFIKDREQQERLREASL 116
+++ ++ + ++VF TRK ++ A + ++ + P++ +E + L
Sbjct: 1620 YEVAK--NKNQQSIVFVPTRKLSRSLAADIIANVSSFEDTLTKPYLVC---EEHVLTPYL 1674
Query: 117 SCSDK-QMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI-NLPAHT 174
D ++ + GV +++ GL ++R ++E LF G ++VL T+++A + N+ A
Sbjct: 1675 EDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQL 1734
Query: 175 VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPP-----FNDTGTVIIMTRRETVHLYE 229
VVI TQ + + Y+++ + ILQM GRAG+ N V+++ Y+
Sbjct: 1735 VVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVLLLCHAPKKEYYK 1794
Query: 230 NLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRK 289
LN VES L C+ + +EIV T++ A++++ ++LY R+ +NP Y++
Sbjct: 1795 MFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLTWTFLYRRLNQNPNYYNLSG 1854
Query: 290 VISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKY-- 347
V S + +H+ E+ + EL I +D + P G + + YYLK+ T++
Sbjct: 1855 V-SHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPLNLGIIASYYYLKYQTIELFG 1913
Query: 348 --IMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKR 405
+ T G+ D + +A E + +R E ++L +L H+ +
Sbjct: 1914 SSLKSTTRRRGIMDI---ISNAPEFNSLPIRHREDQILM--------KLASHL--PQKID 1960
Query: 406 KKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKG 465
K Q K+ VL C S+ L QD I N +R+ + + D +
Sbjct: 1961 KPNYQEISTKVNVLLQ-CHFSRESI-SADLYQDQKFILENATRLLQAIVDVISSNSWLQP 2018
Query: 466 AVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRRIEIV 524
A+ + L++ + Q +WD S + KQLP + A+ S GI+S F+ ++ D RI+++
Sbjct: 2019 AIAAMELSQMITQAMWD-SDSVFKQLPHMNKRRIDAITSQGIESVFDLMSLDDNSRIQLL 2077
Query: 525 TGRKYPFGNHIKESLLSLPPKVDMKIE 551
+ N + +S + P +D+ +
Sbjct: 2078 DLSQQE-SNDLVQSFMKYPD-IDISYQ 2102
Score = 92 (37.4 bits), Expect = 4.7e-42, Sum P(3) = 4.7e-42
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSR 67
M S+ VR + +SAT+PN ED+A +L V G+ F RP+ L + I R
Sbjct: 710 MIESTQQMVRLVGLSATLPNYEDVATFLRVEPDGVFYFDSSYRPIPLEQQYIGIS---DR 766
Query: 68 GKSALVFCS 76
G L C+
Sbjct: 767 GIKQLQRCN 775
Score = 45 (20.9 bits), Expect = 1.6e-41, Sum P(4) = 1.6e-41
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 902 QSEFCIAASDVTKDANSDAVLRDGSTI 928
+S F + SD+T DA +D + D S I
Sbjct: 1470 KSPFGLVVSDLTGDAVTDNKILDRSNI 1496
Score = 44 (20.5 bits), Expect = 4.7e-42, Sum P(3) = 4.7e-42
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 614 LSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPL 664
L+ NP L+ + L E++ + LV +++SN + K SPL
Sbjct: 1843 LNQNPNYYNLSGVSHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPL 1893
Score = 42 (19.8 bits), Expect = 3.4e-41, Sum P(4) = 3.4e-41
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 859 LTKSTIFEHIRKKSKNFPVF--NSNISKTMESD 889
+TK T++E + K++ VF +S+++ +D
Sbjct: 1614 MTKPTVYEVAKNKNQQSIVFVPTRKLSRSLAAD 1646
Score = 41 (19.5 bits), Expect = 1.6e-41, Sum P(4) = 1.6e-41
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 559 GKSKLLITLTRLSQSV--QSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSS 616
G+ +L+ LSQ + Q R +D +GAE + + F I +++ + L
Sbjct: 1317 GEDQLVSFTVPLSQPLPPQYYVRVISDHWIGAEYSLPISFQHLILPEKYPPCRPLLDLQP 1376
Query: 617 NPQQGKLTVKADLIFE 632
P Q KA+ IF+
Sbjct: 1377 LPIQVLKDPKAESIFK 1392
Score = 39 (18.8 bits), Expect = 6.9e-41, Sum P(4) = 6.9e-41
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 843 FEDTVPSQYEECTSKTLT 860
FEDT+ Y C LT
Sbjct: 1654 FEDTLTKPYLVCEEHVLT 1671
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 462 (167.7 bits), Expect = 6.6e-42, Sum P(2) = 6.6e-42
Identities = 132/435 (30%), Positives = 221/435 (50%)
Query: 68 GK-SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK-DREQQERLREASLSCSDKQMQS 125
GK L+F +RK + A+ + TAM + F+K D + +E L+ + + ++
Sbjct: 742 GKHQVLIFVHSRKETAKTARAIRDTAMANDTLSRFLKEDSQSREILKCLAGLLKNNDLKE 801
Query: 126 YILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNK 185
+ YG H+ GL DR ++E F G++QVL +T TLA G+NLPAHTV+IK TQ +N
Sbjct: 802 LLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNP 861
Query: 186 EKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSC 245
E+G +ME ++QM GRAGRP ++ G II+T + Y L+N +ESQ +S
Sbjct: 862 ERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLRLMNEQLPIESQFISK 921
Query: 246 VTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRK-VISRDRI-EKHMQEV 303
+ + L AEIV T+ + +A W+ +YLYVRM +NP Y V +++D + E+ ++
Sbjct: 922 LADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVRNPTLYGVSPDALAKDLLLEERRADL 981
Query: 304 CVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQT--PVNCGLEDAL 361
L + +I D + + GR+ + YY+ T+ + P +E
Sbjct: 982 IHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYYYISHGTIAAYNENLKPTMNDIE-LC 1040
Query: 362 HTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLAN 421
+EE ++ +R++EK L + +D R+ + K+ ++ KI VL
Sbjct: 1041 RLFSLSEEFKYVTVRQDEKMELAKL-LD---RVPIPV-------KETLEDPSAKINVLLQ 1089
Query: 422 DCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAKSLYQRL 480
I + LSLT DM I+ + R+ + + + + ++ + AL L+K + +R+
Sbjct: 1090 -VYISKLKLEGLSLTSDMVYITQSAGRLLRAIFE-IVLKRGWAQLSQKALNLSKMVGKRM 1147
Query: 481 WD-DSPYLLKQLPGI 494
W +P L Q PGI
Sbjct: 1148 WSVQTP--LWQFPGI 1160
Score = 339 (124.4 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 115/507 (22%), Positives = 221/507 (43%)
Query: 26 PNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKS-ALVFCSTRKGAQEA 84
PN+ + L + + G+ E R +T + ++Q+++ K A+VF TRK +
Sbjct: 1542 PNVRPVP--LEIHIHGVDILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLT 1599
Query: 85 AQQLSQTAMTYGYSNP-FIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143
A L + +P F+ E L + ++ ++ + +G+GY + GL D+
Sbjct: 1600 AVDLIAYSHMDNMKSPDFLLGN--LEELEPFLIQICEETLKETLRHGIGYLHEGLSNLDQ 1657
Query: 144 NLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCG 203
++ LF G +QV +++L G L AH VV+ T +++ + + ++ S +LQM G
Sbjct: 1658 EIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMG 1717
Query: 204 RAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDIT 263
R RP +D G +I Y+ L VES L + ++ AE+V + +
Sbjct: 1718 RGSRPLLDDAGKCVIFCHAPRKEYYKKFLYEALPVESHLQHFLHDNFNAEVVARVIENKQ 1777
Query: 264 QAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDG 323
A++++ S++Y R+ +NP Y++ V R + H+ E+ + +L + I D +
Sbjct: 1778 DAVDYLTWSFMYRRLPQNPNYYNLLGVSHR-HLSDHLSELVENTLSDLEVSKCIEIDNE- 1835
Query: 324 FLLKPQEPGRLMTKYYLKFDTM-KYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKL 382
L P G + + YY+ + T+ ++ ++ L + A E I +R E+
Sbjct: 1836 LDLSPLNLGMIASYYYINYTTIERFSSLLASKTKMKGLLEILTSASEYDLIPIRPGEEDA 1895
Query: 383 LN-VINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNS 441
+ +IN RF + R++T + + G+ L D
Sbjct: 1896 VRRLIN-----HQRFSFQNPRCT-DPRVKTSALLQAHFSRQKISGN-------LVMDQCE 1942
Query: 442 ISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKA 501
+ + +R+ + M D A+ + +++ + Q +WD LL QLP AK
Sbjct: 1943 VLLSATRLLQAMVDVISSNGCLNLALLAMEVSQMVTQGMWDRDSMLL-QLPHFTKDLAKR 2001
Query: 502 LHSMGIKSFETLAEA----DPRRIEIV 524
H + ET+ + D +R E++
Sbjct: 2002 CHENPGNNIETIFDLVEMEDDKRQELL 2028
Score = 79 (32.9 bits), Expect = 6.6e-42, Sum P(2) = 6.6e-42
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKL 54
S+ +R + +SAT+PN +D+A +L V ++ G+ F RPV L
Sbjct: 666 STKEHIRLVGLSATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPL 710
Score = 78 (32.5 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 10 SSSLAS-VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF--DIL 62
SS + + +R +A+S ++ N +D+ EW+ G+ F +RPV L + DIL
Sbjct: 1504 SSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEIHIHGVDIL 1559
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 453 (164.5 bits), Expect = 2.5e-41, Sum P(3) = 2.5e-41
Identities = 127/445 (28%), Positives = 230/445 (51%)
Query: 68 GKSALVFCSTRKGAQEAAQQLSQTAMT--YGYSN--PFIKDREQQERLREASLSCSDKQM 123
G ++F +RK ++A+ LS A + +SN P +++ E+++ K++
Sbjct: 721 GHQVMIFVHSRKDTVKSAEILSDMAKEKHFRFSNEEPSFGAKKEFEKVKS-------KEI 773
Query: 124 QSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYF 183
+S +G+ H+ GL DRN++E F G ++VL T TLA G+NLPAHTV+IK TQ +
Sbjct: 774 RSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVY 833
Query: 184 NKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLL 243
N + G +M+ S ++Q+ GRAGRP F+ +G ++T ++ + Y +L++ +ES+ +
Sbjct: 834 NAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFI 893
Query: 244 SCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RKVISRD-RIEKHMQ 301
+ + +HL AEIV TVS++ +A+ W+ +YL++RM +NP Y + S+D ++E+ +
Sbjct: 894 TNLEDHLNAEIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKR 953
Query: 302 EVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVN--CGLED 359
E+ ++ +L +M DE L E GR+ + YY+K +++ + +N G +
Sbjct: 954 EIIIRAAKKLEQCKMTRFDEQSENLGMTELGRIASHYYIKHPSIETFNEM-LNDQLGQDQ 1012
Query: 360 ALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVL 419
L+ + ++ E I LR E L+ + + + K K +Q F
Sbjct: 1013 VLNILSNSSEFENITLREEESTELDKL-AENQCYYELTVLDSHSKVKCLLQA----FFSR 1067
Query: 420 ANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAKSLYQ 478
AN + SL D N N SRI + + + + +K + + L L K +
Sbjct: 1068 AN--------IDGFSLVSDSNYTVQNSSRILRGLFEISL-KKGWCTVSKTILDLCKMVDH 1118
Query: 479 RLWD-DSPYLLKQLPGIGMVTAKAL 502
+LW +SP L+Q + + T + +
Sbjct: 1119 QLWHFESP--LRQAKVLSLDTIRKI 1141
Score = 386 (140.9 bits), Expect = 8.0e-35, Sum P(2) = 8.0e-35
Identities = 129/511 (25%), Positives = 228/511 (44%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV---------------- 58
++R + +S + N D++EW+ + G+ F RPV + +
Sbjct: 1483 NIRVVGLSTAMANAIDLSEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQGKNYCPRMQTMN 1542
Query: 59 ---FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREAS 115
F + YS K L+F S+R+ + A L + N ++ ++ +
Sbjct: 1543 KPSFAAIATYSPKKPVLIFVSSRRQTRLTALDLISYLVV---DNDPLQWIQKGFDIEPTL 1599
Query: 116 LSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTV 175
D+ ++ + +G+G H+ GL DR ++E LF + +Q+L +T+TLA G+NLPAH V
Sbjct: 1600 ARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLV 1659
Query: 176 VIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGC 235
+IK T+YF+ + Y++ + +LQM GRAGRP F+ G ++M Y+ L
Sbjct: 1660 IIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYKKFLYDP 1719
Query: 236 EMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDR 295
VES L + +HL AEIV T+ AI ++ ++ + R+ +P Y + S +
Sbjct: 1720 FPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYYGLEDN-SVEA 1778
Query: 296 IEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQT-PVN 354
+ +++ ++ + +L I +E ++ P G++ + YYL + T++ +
Sbjct: 1779 VNQYLSDLLDSTLADLEQSSCIEINEYDEII-PMSMGKIASFYYLNYKTVQNFSDNIKRD 1837
Query: 355 CGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREE 414
++ L + A E + +R NE+ ++N + + L I + K + +
Sbjct: 1838 SDIKTLLRVLSDAAEYSEFPVRHNEE----ILNQELNENLPIKIGNYEDSHTK-VHLLLQ 1892
Query: 415 KIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAK 474
F C + P + D T D S G RI + M D + A+ L +
Sbjct: 1893 AHF---QRCPL--P-ITDF--TTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQ 1944
Query: 475 SLYQRLWD-DSPYLLKQLPGIGMVTAKALHS 504
L Q WD DS L LP I A L S
Sbjct: 1945 MLVQGRWDYDSS--LMTLPHINKDFADFLSS 1973
Score = 90 (36.7 bits), Expect = 2.5e-41, Sum P(3) = 2.5e-41
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLT 55
+R + +SAT+PN +D+A ++ P G F RPV LT
Sbjct: 648 IRIVGLSATLPNYKDVARFIRAPASGTHFFDSSYRPVPLT 687
Score = 44 (20.5 bits), Expect = 2.5e-41, Sum P(3) = 2.5e-41
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 980 SSSIKMLSFDISMMKKQKCSPNTSTRQCCPLPLASTGKTKEVDSFLGF 1027
S I+ +SF ++ +Q NT PLP + K K+ +S F
Sbjct: 1278 SEGIREISFRHLVLPQQDRVVNTELLDLQPLPKEAL-KNKDFESLFKF 1324
>UNIPROTKB|F1NTD6 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
KEGG:gga:421790 Uniprot:F1NTD6
Length = 2211
Score = 453 (164.5 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 126/427 (29%), Positives = 210/427 (49%)
Query: 60 DILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCS 119
++L Q G +VF R A L + A G+ F+ + E + S
Sbjct: 716 NVLKQIMAGHQVMVFVHARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQAEKQVQRS 775
Query: 120 -DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIK 178
+KQ++ G H+ G+ +DR+L+E LF G ++VL T TLA G+NLPAH VVIK
Sbjct: 776 RNKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIK 835
Query: 179 STQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMV 238
TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + + Y LL +
Sbjct: 836 GTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPI 895
Query: 239 ESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RKVISRDR-I 296
ESQ L + ++L AEI TV+++ +A++W+ +YLYVRM+ NP Y + K D +
Sbjct: 896 ESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGL 955
Query: 297 EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCG 356
EKH +++ ++ +L +MI +E + GR + YY+K++T++ +
Sbjct: 956 EKHREQLVIEVGRKLDKARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHK 1015
Query: 357 LE-DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEK 415
E D L V AEE I++R E + L+ + D + G ++ K
Sbjct: 1016 TEGDILAIVSKAEEFEQIKVREEEIEELDTLLNDF-----CELPAPGG-----VENNYGK 1065
Query: 416 IFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAK 474
I +L I + SL D ++ N +RI + + + + RK + L L+K
Sbjct: 1066 INILLQT-YISRGELDSFSLISDSAYVAQNAARIVRALFEIAL-RKRWPAMTYRLLNLSK 1123
Query: 475 SLYQRLW 481
+ +RLW
Sbjct: 1124 VIDKRLW 1130
Score = 436 (158.5 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 103/360 (28%), Positives = 185/360 (51%)
Query: 26 PNIEDIAEWLNVPVQGIKRFGEEMRP--VKLTTKVFDILMQYSRGKSALVFCSTRKGAQE 83
P++ + L V +QG G+ P ++ F + +S K L+F S+R+ +
Sbjct: 1524 PSVRPVP--LEVHIQGFP--GQHYCPRMARMNKPAFQAIRSHSPAKPVLIFVSSRRQTRL 1579
Query: 84 AAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143
+ L T ++K E++ + + + D ++ + +G+G H+ GL +DR
Sbjct: 1580 TSLDLIAFLATEDDPKQWLKMDERE--MNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDR 1637
Query: 144 NLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCG 203
+E LF+ +QVL T+TLA G+N PAH V++K T+Y++ + Y+++ + +LQM G
Sbjct: 1638 KTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMG 1697
Query: 204 RAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDIT 263
RAGRP F+D G +I+ Y+ L VES LL + +HL AEI T++
Sbjct: 1698 RAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQ 1757
Query: 264 QAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDG 323
A++++ +Y + R+ NP Y++ V S D + K++ + + + +L C I ED
Sbjct: 1758 DAMDYITWTYFFRRLIMNPTYYNLDNV-SHDTMNKYLSSLVEKSLFDLECSYCIEIGEDN 1816
Query: 324 FLLKPQEPGRLMTKYYLKFDTMKYIM-QTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKL 382
++P GR+ + YYLK T+ Q +E+ L + +A+E + +R NE ++
Sbjct: 1817 RTIEPLTYGRIASYYYLKHPTIGMFKDQLKPESSVEELLLILTNADEYTDLPVRHNEDQM 1876
Score = 83 (34.3 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L
Sbjct: 646 STQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDSRFRPVPL 690
Score = 83 (34.3 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
VR + +S + N D+A+WLN+ G+ F +RPV L +
Sbjct: 1493 VRVVGLSTALANARDLADWLNINQMGLFNFRPSVRPVPLEVHI 1535
Score = 38 (18.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 45 FGEEMRPVKLTTKVFDILMQYSRGK 69
F + + P+ +T K MQ S+G+
Sbjct: 559 FSKRLEPLGITVKELTGDMQLSKGE 583
Score = 37 (18.1 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 24 TIPNIEDIAEWLN 36
T+ N+E+ +W++
Sbjct: 915 TVTNVEEAVKWIS 927
>RGD|1307995 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex subunit
3" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 RGD:1307995 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 IPI:IPI01016410 UniGene:Rn.24209
Ensembl:ENSRNOT00000057016 UCSC:RGD:1307995
GeneTree:ENSGT00640000091272 ArrayExpress:F1LPQ2 Uniprot:F1LPQ2
Length = 2197
Score = 455 (165.2 bits), Expect = 5.5e-40, Sum P(3) = 5.5e-40
Identities = 119/383 (31%), Positives = 190/383 (49%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQY------SRGK 69
VR + +S + N D+A+WLN+ G+ F +RPV L + Q+ S K
Sbjct: 1485 VRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNK 1544
Query: 70 SAL----VFCSTRKGAQEAAQQLSQTAMTYGYSNPFI---KDREQ-----QERLREASLS 117
A C R + LS +MT F+ +D +Q ++ + +
Sbjct: 1545 PAFQESHTHCPDRPCLLLPERMLS--SMTKLELIAFLATEEDPKQWLNMDEQEMENIIAT 1602
Query: 118 CSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVI 177
D ++ + +G+G H+ GL +DR +E LF+ VQVL T+TLA G+N PAH V+I
Sbjct: 1603 VRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1662
Query: 178 KSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEM 237
K T+Y++ + Y++ + +LQM GRAGRP F+D G +I+ Y+ L
Sbjct: 1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFP 1722
Query: 238 VESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIE 297
VES LL +++HL AEI T++ A++++ +Y + R+ NP Y++ V S+D I
Sbjct: 1723 VESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDV-SQDAIN 1781
Query: 298 KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIM-QTPVNCG 356
K + + Q + EL I ED ++P GR+ + YYLK T+K + C
Sbjct: 1782 KFLSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHKTVKMFKDRLKPECS 1841
Query: 357 LEDALHTVCHAEEIAWIQLRRNE 379
E+ L + AEE + +R NE
Sbjct: 1842 TEELLSILSDAEEYTDLPVRHNE 1864
Score = 453 (164.5 bits), Expect = 4.0e-41, Sum P(2) = 4.0e-41
Identities = 126/427 (29%), Positives = 212/427 (49%)
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR--EQQERLREASLSC 118
+L Q G +VF R A L + A G + F+ + E L++ S
Sbjct: 709 VLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGPEYGHALKQVQKS- 767
Query: 119 SDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIK 178
+KQ++ G H+ G+ +DRNL+E LF G ++VL T TLA G+NLPAH V+IK
Sbjct: 768 RNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIK 827
Query: 179 STQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMV 238
TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + + Y +LL +
Sbjct: 828 GTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPI 887
Query: 239 ESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RKVISRD-RI 296
ESQ L + ++L AEI TV+++ +A++WM +YLYVRM+ NP Y + K D +
Sbjct: 888 ESQFLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTL 947
Query: 297 EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCG 356
KH +++ ++ +L +MI +E + GR + YY+K++T++ +
Sbjct: 948 RKHREQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHK 1007
Query: 357 LE-DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEK 415
E D V AEE I++R E + L+ + ++ L + G ++ K
Sbjct: 1008 TEGDIFAIVSKAEEFDQIKVREEEIEELDAL-LNNFCEL----SAPGG-----VENSYGK 1057
Query: 416 IFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAK 474
I +L I + SL D ++ N +RI + + + + RK + L L+K
Sbjct: 1058 INILLQT-YISRGEMDSFSLISDSAYVAQNAARIVRALFEIAL-RKRWPTMTYRLLNLSK 1115
Query: 475 SLYQRLW 481
+ +RLW
Sbjct: 1116 VIDKRLW 1122
Score = 81 (33.6 bits), Expect = 4.0e-41, Sum P(2) = 4.0e-41
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L
Sbjct: 638 STQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPL 682
Score = 38 (18.4 bits), Expect = 5.5e-40, Sum P(3) = 5.5e-40
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 419 LANDCLIGDPSVHDLSLTQDMNSIST 444
L +DC +G +D+ L IST
Sbjct: 2161 LMSDCYLGLDQQYDIFLNVTKADIST 2186
Score = 37 (18.1 bits), Expect = 2.1e-35, Sum P(3) = 2.1e-35
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 24 TIPNIEDIAEWLN 36
T+ N+E+ +W++
Sbjct: 907 TVTNVEEAVKWMS 919
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 439 (159.6 bits), Expect = 4.4e-41, Sum P(2) = 4.4e-41
Identities = 136/475 (28%), Positives = 223/475 (46%)
Query: 26 PNIEDIAEWLNVPVQGI--KRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQE 83
P++ + L V + G K + M + T F + YS + +VF S+R+ +
Sbjct: 1526 PSVRPVP--LQVHINGFPGKHYCPRMATMNRPT--FQAIRTYSPCEPTIVFVSSRRQTRL 1581
Query: 84 AAQQLSQTAMTYGYSNP--FIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLK 141
A L G SNP F+ E + L ++ ++ ++ + +G+G H+ GL +
Sbjct: 1582 TALDL--ITFVAGESNPKQFLHIPEDEIELILQNIR--EQNLKFCLAFGIGLHHAGLQEQ 1637
Query: 142 DRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQM 201
DR +E LFL +Q+L T TLA G+NLPAH VVIK T+YF+ + Y++ + +LQM
Sbjct: 1638 DRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDGKVKKYVDMPITDVLQM 1697
Query: 202 CGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSD 261
GRAGRP F++ G +++ E + Y+ L VES LL + EH+ AEIV TV
Sbjct: 1698 MGRAGRPQFDNEGVAVVLVHDEKKNFYKKFLYDPFPVESSLLGVLPEHINAEIVAGTVQS 1757
Query: 262 ITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDE 321
A++++ +Y + R+ +NP Y ++ I + + M + + V ELS + +
Sbjct: 1758 KQAALDYLTWTYFFRRLLRNPSYYQLQD-IEPENVNNFMSNLVERVVYELSAAACL-VER 1815
Query: 322 DGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGL--EDALHTVCHAEEIAWIQLRRNE 379
DG L+ P GR+ + YYL + TMK+ ++ + G+ + L + + E + +R NE
Sbjct: 1816 DGCLI-PTFLGRISSYYYLSYRTMKHFLED-LQPGMNTKKVLLAIADSYEFDQLPVRHNE 1873
Query: 380 KKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDM 439
K N + RF + K F+L S+ + D
Sbjct: 1874 DKH----NEEMAEVSRFRPPSSSW------DSSYTKTFLLLQ-AHFARQSLPNSDYLTDT 1922
Query: 440 NSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGI 494
S N +R+ + M DY R + L +S+ Q W D L LPG+
Sbjct: 1923 KSALDNATRVMQAMVDYTAERGWLSTTLVVQQLMQSVIQARWFDGSEFLT-LPGV 1976
Score = 433 (157.5 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 122/460 (26%), Positives = 222/460 (48%)
Query: 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCS-DKQMQSY 126
G +VF R A + + A S F+ L S+ S +KQ+
Sbjct: 725 GHQIMVFVHARNATVRTANVIRELAQQNNTSALFLPKDSAAHGLATRSIQRSRNKQLVEL 784
Query: 127 ILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKE 186
G+ H+ G+ DR ++E F++G + VL T TLA G+NLPAH V+I+ T ++ +
Sbjct: 785 FSCGLAMHHAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYDAK 844
Query: 187 KGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCV 246
G +++ +LQ+ GRAGRP F+ +G I+T + ++ Y +LL +ES ++C+
Sbjct: 845 HGSFVDLGILDVLQIFGRAGRPQFDKSGVGTIITSYDKLNHYLSLLTNQFPIESNFVNCL 904
Query: 247 TEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVR-KVISRD-RIEKHMQEVC 304
++L AEI T++++ +AIEW+ +YL+VRM+ NP Y + + +D +E + +
Sbjct: 905 ADNLNAEIGLGTITNVDEAIEWLSYTYLFVRMRINPHVYGIEYSELEKDPTLEARRRALI 964
Query: 305 VQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYI--MQTPVNCGLEDALH 362
+ L +M+ ++ + + GR + +Y+K+DT++ + P E L
Sbjct: 965 MSAAMSLDKARMMRFNQRTMDMNITDLGRTASYFYIKYDTVETFNELMKPFMTQAE-ILA 1023
Query: 363 TVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLAND 422
+ A+E +++R +E + L+ + K+ + G + K+ +L
Sbjct: 1024 MISQAQEFQQLKVRDDEMEELDEL---KNAYCKIKPYGGS-------ENVHGKVNILIQT 1073
Query: 423 CLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWD 482
L + V SL+ DM+ I+TN RI++ + + + N + N L K +R WD
Sbjct: 1074 YL-SNGYVKSFSLSSDMSYITTNIGRISRALFSIVLRQNNAVLSGNMLQLCKMFERRQWD 1132
Query: 483 DSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIE 522
+L KQ P I T L G+ + L + + R ++
Sbjct: 1133 FDCHL-KQFPTINAETIDKLERRGLSVYR-LRDMEHRELK 1170
Score = 95 (38.5 bits), Expect = 4.4e-41, Sum P(2) = 4.4e-41
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 1 MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTKVF 59
++A + SS + +R + +SAT+PN D+A +L V P++G+ F RPV L T
Sbjct: 637 LVARTLRLVESSQSMIRIVGLSATLPNYIDVAHFLRVNPMKGLFYFDSRFRPVPLDTNFV 696
Query: 60 DI 61
I
Sbjct: 697 GI 698
Score = 79 (32.9 bits), Expect = 2.1e-39, Sum P(2) = 2.1e-39
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
++R + +S + N +D+A WL + G+ F +RPV L +
Sbjct: 1494 AIRIVGLSTALANAQDLANWLGINKMGLYNFKPSVRPVPLQVHI 1537
Score = 40 (19.1 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 24 TIPNIEDIAEWLN 36
TI N+++ EWL+
Sbjct: 916 TITNVDEAIEWLS 928
Score = 37 (18.1 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 27 NIEDI---AEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQ 64
NI D+ A + + ++ F E M+P ++ ++ Q
Sbjct: 987 NITDLGRTASYFYIKYDTVETFNELMKPFMTQAEILAMISQ 1027
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 447 (162.4 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 134/486 (27%), Positives = 235/486 (48%)
Query: 41 GIK-RFGEEMRPVKLTTKVFDILMQY-SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYS 98
G+K + G + L FD + + + +VF +R+ + A+ L + A+
Sbjct: 512 GVKGKAGTKQSRENLDEVAFDKVREMLEKDHQVMVFVHSRRDTLQTAKMLHERAVDQACL 571
Query: 99 NPFIKDREQQ--ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQ 156
+ F + +R+ +C ++++ + G+G H+ G+ DRNL+E LF +G ++
Sbjct: 572 DLFDPSMHPKYDAAIRDMK-TCKARELRDLVPKGMGIHHAGMTRSDRNLMERLFAEGVLK 630
Query: 157 VLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTV 216
VLC T TLA G+NLPA VVIK TQ ++ ++G +++ +LQ+ GRAGRP F DTG
Sbjct: 631 VLCCTATLAWGVNLPAAAVVIKGTQVYSAQEGKFVDLGILDVLQIFGRAGRPQFEDTGIG 690
Query: 217 IIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYV 276
+I T + + Y + +ES+ S + ++L AEI TV+ I +A++W+ SYLYV
Sbjct: 691 MICTTADKLSHYLTAVTDQLPIESRFSSKLVDNLNAEIALGTVTSIPEAVQWIGYSYLYV 750
Query: 277 RMKKNPQNYSVRKV-ISRD-RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRL 334
RM+KNP Y + D + + + + +Q L QM+ +E L+ ++ GR+
Sbjct: 751 RMRKNPMAYGISWAEFEEDPELVQRRRTLAIQAARTLQECQMVIFNETTEELRSKDIGRI 810
Query: 335 MTKYYLKFDTMKYI--MQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG 392
++YY+ +++ M +P D L + + E IQ R +E K L + KD
Sbjct: 811 ASQYYILHTSIQVFNTMMSPYATEA-DVLKMIAMSGEFDNIQSRDSEAKELTRM---KDS 866
Query: 393 RLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKC 452
R + G I T + K +L I D +L D+N ++ RI +
Sbjct: 867 RAAVPCDVAGG-----IDTPQAKTNILLQ-AYISKVQPEDFALGNDLNYVAQQAGRICRA 920
Query: 453 MRDYFIFRKNYKGAVNSALLAKSLYQRLWD-DSPYLLKQLPGIGMVTAKALHSMGIKSFE 511
+ + R+ + LAKS+ +R+W P +LP + A S+ +++
Sbjct: 921 IFMIALNRRWGHQCLVLLTLAKSIEKRVWPFQHPLHQFELPKPILNQLDAKDSLSVEAMR 980
Query: 512 TLAEAD 517
+ A+
Sbjct: 981 DMEAAE 986
Score = 396 (144.5 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 133/535 (24%), Positives = 235/535 (43%)
Query: 59 FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSC 118
F + +S K +VF +R+ + A+ L F+ E +L +
Sbjct: 1373 FLAVKNHSPTKPVIVFVPSRRQTRLTAKDLINMCGMEDNPRRFLNMDEDDLQLNLTRVK- 1431
Query: 119 SDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIK 178
D ++ I +G+G H+ GL DR L E LFL +Q+L T+TLA G+NLPAH VV+K
Sbjct: 1432 -DDALKEAISFGIGLHHAGLVESDRQLAEELFLNNKIQILVATSTLAWGVNLPAHLVVVK 1490
Query: 179 STQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMV 238
TQ+++ + Y + D + +LQM GRAGRP F+++G I T+ Y++ L+ V
Sbjct: 1491 GTQFYDAKIEGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFTQDSKKDFYKHFLHTGFPV 1550
Query: 239 ESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVR-------KVI 291
ES L + + HL AEI T+ A++++ ++ + R+ KNP Y + +
Sbjct: 1551 ESSLHTVLDNHLCAEISAETIITKQDALDYLTWTFFFRRLHKNPSYYGLEIPVEEQTSIA 1610
Query: 292 SRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQT 351
++ ++ + +DEL+ + + +G + P G++M+ YYL T++ +++
Sbjct: 1611 AQQAANDYIISMIDSSLDELATSKCVEVYPNGDV-DPTPLGKIMSYYYLSHKTIRSLVKN 1669
Query: 352 P-VNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQ 410
D L +C A E + +R NE L+N I + K + + G +
Sbjct: 1670 AKAGATFADVLSWMCRAIEYDELPVRHNED-LIN-IELSKALPIATDLFGSLPMWDPHV- 1726
Query: 411 TREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSA 470
K F+L + P + D S+ RI + D + +
Sbjct: 1727 ----KAFLLLQAHMSRIP-LPITDYVGDQTSVLDQAIRIIQASIDVLTELGHLSSCLEMI 1781
Query: 471 LLAKSLYQRLWD-DSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI-EIVTGRK 528
L + + W DSP + LPG+ + + G + LA +++ +
Sbjct: 1782 KLLQCIKSARWPTDSPLAI--LPGLEPESLATKGNKGSVTLGKLASLPNKQLGSAIKELG 1839
Query: 529 YPFGNHIK-ESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYA 582
P K + +S+ P + +K+E+I + L + L R + V R YA
Sbjct: 1840 VPASQQNKFQKAVSMLPDLSVKVEDITA-----ASLSVVLRRANPLVDREARVYA 1889
Score = 83 (34.3 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 2 LACNPEMKSSSLAS-VRFLAVSATIPNIEDIAEWLNVP-VQGIKRFGEEMRPVKL 54
L E + S S +R + +SAT+PN D+A++L V +QG+ F RPV L
Sbjct: 452 LVARTERQVESTQSLIRIVGLSATLPNFIDVADFLKVNRMQGLFYFDASFRPVPL 506
Score = 74 (31.1 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 10 SSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+S+ SVR L +S N D+ WL V +G+ F +RPV L
Sbjct: 1305 ASTKNSVRLLGMSTACANATDLGNWLGVK-EGLFNFRHSVRPVPL 1348
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 462 (167.7 bits), Expect = 1.3e-40, Sum P(4) = 1.3e-40
Identities = 142/503 (28%), Positives = 252/503 (50%)
Query: 59 FDILMQY-SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLS 117
+D L + RG +VF +RK ++A+ + A + + F D ++++ + +
Sbjct: 522 YDKLSEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSLVK 581
Query: 118 CSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVI 177
DK M+ +G G H+ G+ DRNL E +F G ++VLC T TLA G+NLPA V+I
Sbjct: 582 NRDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVII 641
Query: 178 KSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDT-GTVIIMTRRETVHLYENLLNGCE 236
K TQ ++ +KG +++ S ++Q+ GR GRP F GT I+ T + + Y +L+
Sbjct: 642 KGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQH 701
Query: 237 MVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVR-KVISRD- 294
+ES+ S + ++L AEI +V+++ +AIEW+ +Y++VRM+KNP Y + + I+ D
Sbjct: 702 PIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIANDP 761
Query: 295 RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVN 354
++ + +++ V L QMI DE ++ GR+ + +YL ++++ Q
Sbjct: 762 QLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQMCDP 821
Query: 355 CGLE-DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTRE 413
E D L + + E I+ R E K L ++ D + I ++ T +
Sbjct: 822 RATEADVLSMISMSSEFDGIKFREEESKELKRLS---DESVECQIGS-------QLDTPQ 871
Query: 414 EKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYK-GAVNSALL 472
K VL I + D +L+ D N ++ N RI + + F+ N + G ++ +L
Sbjct: 872 GKANVLLQ-AYISQTRIFDSALSSDSNYVAQNSVRICRAL---FLIGVNRRWGKFSNVML 927
Query: 473 --AKSLYQRLWD-DSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI-EIVTGRK 528
KS+ +RLW D P LP + + + S E L E + + E+V +K
Sbjct: 928 NICKSIEKRLWAFDHPLCQFDLPE--NIIRRIRDTK--PSMEHLLELEADELGELVHNKK 983
Query: 529 YPFGNHIKESLLSLPPKVDMKIE 551
G+ + + +LS PK++++ E
Sbjct: 984 A--GSRLYK-ILSRFPKINIEAE 1003
Score = 388 (141.6 bits), Expect = 6.9e-33, Sum P(3) = 6.9e-33
Identities = 94/323 (29%), Positives = 167/323 (51%)
Query: 58 VFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLS 117
VF + Q+S K AL+F ++R+ + A L F+ + + +E L+
Sbjct: 1359 VFMAIKQHSPDKPALIFVASRRQTRLTALDLIHLCGMEDNPRRFL-NIDDEEELQYYLSQ 1417
Query: 118 CSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVI 177
+D ++ + +G+G H+ GL KDR++ LF K +Q+L T+TLA G+NLPAH V+I
Sbjct: 1418 VTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVII 1477
Query: 178 KSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEM 237
K TQ+F+ + Y + D + ILQM GRAGRP ++ TGT I+ T+ Y++ LN
Sbjct: 1478 KGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFP 1537
Query: 238 VESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIE 297
VES L + +HL AEI ++++ +A++++ ++L+ R NP Y + S +
Sbjct: 1538 VESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFLFRRAHHNPTYYGIEDDTSTAGVS 1597
Query: 298 KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIM-QTPVNCG 356
+H+ + ++ L Q + D + P + + YY+ T++ ++ Q +
Sbjct: 1598 EHLSSLIDSTLENLRESQCVLLHGDDIVATPFLS--ISSYYYISHLTIRQLLKQIHDHAT 1655
Query: 357 LEDALHTVCHAEEIAWIQLRRNE 379
++ L + A E + +R E
Sbjct: 1656 FQEVLRWLSLAVEYNELPVRGGE 1678
Score = 80 (33.2 bits), Expect = 1.3e-40, Sum P(4) = 1.3e-40
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKL 54
SS + +R + +SAT+PN D+A++L V Q G+ F + RP L
Sbjct: 453 SSQSMIRIIGLSATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPL 497
Score = 79 (32.9 bits), Expect = 8.8e-33, Sum P(3) = 8.8e-33
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+ S + VR L +S + N D+A WL V G+ F +RPV L
Sbjct: 1289 ISSQTKQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPL 1335
Score = 43 (20.2 bits), Expect = 1.3e-40, Sum P(4) = 1.3e-40
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 674 IEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDED 711
IED+ TA + + + +L+ ST+E+ LL D
Sbjct: 1587 IEDDTSTAGVS--EHLSSLIDSTLENLRESQCVLLHGD 1622
Score = 39 (18.8 bits), Expect = 1.3e-40, Sum P(4) = 1.3e-40
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 776 LHDELDVPEETEGSIFPRATLLNPSSG 802
+H +L +PEE G + +L+N + G
Sbjct: 1931 IHCDLFIPEEIRGEEL-QFSLINDALG 1956
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 464 (168.4 bits), Expect = 1.6e-40, Sum P(4) = 1.6e-40
Identities = 160/586 (27%), Positives = 268/586 (45%)
Query: 58 VFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE-QQERLREASL 116
V++ M+++ LVF +RK + A+ + + F+K+ E LR +
Sbjct: 708 VYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAE 767
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
+ +++ + YG H+ G+ DR L+E LF +QVL +T TLA G+NLPAHTV+
Sbjct: 768 QVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVI 827
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCE 236
IK TQ +N EKG ++E +LQM GRAGRP ++ G I++T + Y +LLN
Sbjct: 828 IKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQL 887
Query: 237 MVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RKVISRDR 295
+ESQ +S + + L AEIV TV + A+ W+ +YLY+RM +NP Y V I D
Sbjct: 888 PIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKADP 947
Query: 296 I-EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVN 354
+ E+H ++ L +I D + + GR+ + YYL +TM Q
Sbjct: 948 LLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETMLTYNQLLKQ 1007
Query: 355 CGLEDALHTVCH-AEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTRE 413
E L V + E I +R EK L + R+ I K+ I+
Sbjct: 1008 TLSEIELFRVFSLSSEFRHISVREEEKLELQKLM----ERVPIPI-------KESIEEHS 1056
Query: 414 EKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLA 473
K+ VL I + +L DM I+ + +R+ + + + + R + A + L
Sbjct: 1057 AKVNVLLQ-AYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLC 1115
Query: 474 KSLYQRLWDD-SPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI-EIVTGRKYPF 531
K + +R+W +P L+Q + AK L + L + +P + E++ K
Sbjct: 1116 KMIDRRMWQSMTP--LRQFKKMPDEIAKKLEKKHFP-WGRLYDLEPHELGELIRVPK--L 1170
Query: 532 GNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLT---RLSQSVQSTKRHYADMIVGA 588
G I + + P K+++ I+ +G ++ +T+T + + V + +I
Sbjct: 1171 GKTIHKFVHQFP-KLELSTH-IQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDV 1228
Query: 589 EENNMVLFHE------KIRVDEFSSPYSVTVLSSNPQQGKLTVKAD 628
+ + ++L HE K DE + V V P Q L + +D
Sbjct: 1229 D-SELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSD 1273
Score = 369 (135.0 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 121/503 (24%), Positives = 223/503 (44%)
Query: 26 PNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAA 85
P++ I L + +QG R ++ V++ +++YS K +VF S+RK A+ A
Sbjct: 1515 PSVRPIP--LELHIQGYNVTHNATRIATMSKPVYNAILKYSAHKPVIVFVSSRKQARLTA 1572
Query: 86 QQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145
+ A + N F ++E ++ +DK ++ + GV Y + GL D L
Sbjct: 1573 IDVLTYAASDLQPNRFF--HAEEEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRL 1630
Query: 146 IEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRA 205
+E LF G VQV + L G+++ AH V+I TQ++N + Y ++ + +LQM GRA
Sbjct: 1631 VEQLFDSGAVQVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRA 1690
Query: 206 GRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQA 265
RP + ++M + ++ +N +ES L + +H AE+V T+ + A
Sbjct: 1691 NRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDA 1750
Query: 266 IEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFL 325
++++ ++LY R+ +NP Y+++ V R + H+ E+ + +L + I ++D
Sbjct: 1751 VDYLTWTFLYRRLTQNPNYYNLQGVTHR-HLSDHLSELVENTLSDLEQSKCISVEDDMDT 1809
Query: 326 LKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLN 384
L P G + YY+ + T++ + + + L + A E + +R +E+++L
Sbjct: 1810 L-PLNLGMIAAYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLR 1868
Query: 385 VINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLS--LTQDMNSI 442
++ RL + G K + N L S L L D I
Sbjct: 1869 TLS----QRLPNKLTGPNETAPKFNDPH-----IKTNLLLQAHLSRLQLGPELQGDTEQI 1919
Query: 443 STNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKAL 502
+ R+ + D AV + LA+ + Q +W YL KQLP K
Sbjct: 1920 LSKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYL-KQLPHFSPEIVKRC 1978
Query: 503 HSMGIKS-FETLAEADPRRIEIV 524
I++ F+ + D R ++
Sbjct: 1979 TEKKIETVFDIMELEDEDRTRLL 2001
Score = 84 (34.6 bits), Expect = 1.6e-40, Sum P(4) = 1.6e-40
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 16 VRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
VR + +SAT+PN +D+A +L V P +G+ F RPV L
Sbjct: 646 VRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSL 685
Score = 40 (19.1 bits), Expect = 1.6e-40, Sum P(4) = 1.6e-40
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 843 FEDTVPSQYEECTSKTLTKSTIFEHIRKKSKNFPVFNSNISKT 885
+ED V +EE +TL++ + + ++ P FN KT
Sbjct: 1854 YEDVVVRHHEEQVLRTLSQR-LPNKLTGPNETAPKFNDPHIKT 1895
Score = 37 (18.1 bits), Expect = 1.6e-40, Sum P(4) = 1.6e-40
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 631 FEEYIGVDIHQKLVLVKESNSNVNRKC 657
+E+Y D+ Q + N + + KC
Sbjct: 1675 YEDYPITDVLQMIGRANRPNEDADAKC 1701
Score = 37 (18.1 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 59 FDILMQYSRGKSALVFCSTRKGAQEAAQQ 87
FD + Q + +++C+ AQ +++
Sbjct: 320 FDFIKQLKLNRQMVLYCTMLASAQTDSER 348
>MGI|MGI:1925237 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex
subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
Length = 2198
Score = 446 (162.1 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 126/427 (29%), Positives = 210/427 (49%)
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR--EQQERLREASLSC 118
+L Q G +VF R A L + A G + F+ E L++ S
Sbjct: 709 VLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTEGPEYGHALKQVQKS- 767
Query: 119 SDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIK 178
+KQ++ G H+ G+ +DRNL+E LF G ++VL T TLA G+NLPAH VVIK
Sbjct: 768 RNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIK 827
Query: 179 STQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMV 238
TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + + Y +LL +
Sbjct: 828 GTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPI 887
Query: 239 ESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RKVISRD-RI 296
ESQ L + ++L AEI TV+++ +A+ WM +YLYVRM+ NP Y + K D +
Sbjct: 888 ESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAYGISHKAYQIDPTL 947
Query: 297 EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCG 356
KH +++ ++ +L +MI +E + GR + +Y+K++T++ +
Sbjct: 948 RKHREQLLIEVGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNTIETFNELFDAHK 1007
Query: 357 LE-DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEK 415
E D V AEE I++R E + L+ + ++ L + G ++ K
Sbjct: 1008 TEGDIFAIVSKAEEFDQIKVREEEIEELDAL-LNNFCEL----SAPGG-----VENSYGK 1057
Query: 416 IFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAK 474
I +L I + SL D ++ N +RI + + + + RK + L L+K
Sbjct: 1058 INILLQT-YISRGEMDSFSLISDSAYVAQNAARIVRALFEIAL-RKRWPTMTYRLLNLSK 1115
Query: 475 SLYQRLW 481
+ +RLW
Sbjct: 1116 VIDKRLW 1122
Score = 446 (162.1 bits), Expect = 9.8e-40, Sum P(3) = 9.8e-40
Identities = 111/357 (31%), Positives = 180/357 (50%)
Query: 26 PNIEDIAEWLNVPVQGIKRFGEEMRP--VKLTTKVFDILMQYSRGKSALVFCSTRKGAQE 83
P++ + L V +QG G+ P + F + +S K L+F S+R+ +
Sbjct: 1516 PSVRPVP--LEVHIQGFP--GQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRL 1571
Query: 84 AAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143
A +L T ++ EQ+ + + D ++ + +G+G H+ GL +DR
Sbjct: 1572 TALELIAFLATEEDPKQWLNMDEQE--MDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDR 1629
Query: 144 NLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCG 203
+E LF+ VQVL T+TLA G+N PAH V+IK T+Y++ + Y++ + +LQM G
Sbjct: 1630 KTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMG 1689
Query: 204 RAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDIT 263
RAGRP F+D G +I+ Y+ L VES LL +++HL AEI T++
Sbjct: 1690 RAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQ 1749
Query: 264 QAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDG 323
A++++ +Y + R+ NP YS+ V S+D I K + + Q + EL I ED
Sbjct: 1750 DAMDYITWTYFFRRLIMNPSYYSLGDV-SQDSINKFLSHLIGQSLVELELSHCIEVGEDN 1808
Query: 324 FLLKPQEPGRLMTKYYLKFDTMKYIM-QTPVNCGLEDALHTVCHAEEIAWIQLRRNE 379
++P GR+ + YYLK T+K + C E+ L + AEE + +R NE
Sbjct: 1809 RTIEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNE 1865
Score = 85 (35.0 bits), Expect = 9.8e-40, Sum P(3) = 9.8e-40
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
VR + +S + N D+A+WLN+ G+ F +RPV L +
Sbjct: 1485 VRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHI 1527
Score = 81 (33.6 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L
Sbjct: 638 STQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPL 682
Score = 41 (19.5 bits), Expect = 9.8e-40, Sum P(3) = 9.8e-40
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 419 LANDCLIGDPSVHDLSLTQDMNSISTNGSRI 449
L +DC +G +D+ L +IST S +
Sbjct: 2162 LMSDCYLGLDQQYDIYLNVIKANISTKDSDV 2192
>UNIPROTKB|E2QVY0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
Uniprot:E2QVY0
Length = 1925
Score = 441 (160.3 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 109/358 (30%), Positives = 180/358 (50%)
Query: 26 PNIEDIAEWLNVPVQGIKRFGEEMRP--VKLTTKVFDILMQYSRGKSALVFCSTRKGAQE 83
P++ + L V +QG G+ P + F + +S K L+F S+R+ +
Sbjct: 1515 PSVRPVP--LEVHIQGFP--GQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRL 1570
Query: 84 AAQQLSQTAMTYGYSNPFIK-DREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKD 142
A +L T ++ D + E + + D ++ + +G+G H+ GL +D
Sbjct: 1571 TALELIAFLATEEDPKQWLNMDEREMENIIG---TLRDSNLKLTLAFGIGMHHAGLHERD 1627
Query: 143 RNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMC 202
R +E LF+ VQVL T+TLA G+N PAH V+IK T+Y++ + Y++ + +LQM
Sbjct: 1628 RKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMM 1687
Query: 203 GRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDI 262
GRAGRP F+D G +I+ Y+ L VES LL +++HL AEI T++
Sbjct: 1688 GRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSK 1747
Query: 263 TQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDED 322
A++++ +Y + R+ NP Y++ V S D + K + + + + EL I ED
Sbjct: 1748 QDAMDYITWTYFFRRLIMNPSYYNLSDV-SHDSVNKFLSSLVEKSLVELEHSYCIEIGED 1806
Query: 323 GFLLKPQEPGRLMTKYYLKFDTMKYIMQT-PVNCGLEDALHTVCHAEEIAWIQLRRNE 379
++P GR+ + YYLK T+K + CG E+ L + AEE + +R NE
Sbjct: 1807 NRSIEPLTYGRIASYYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTDLPVRHNE 1864
Score = 441 (160.3 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
Identities = 123/426 (28%), Positives = 209/426 (49%)
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCS- 119
+L Q G +VF R A L + A G + F+ + + E + S
Sbjct: 708 VLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPSQGSEYGHAEKQVQKSR 767
Query: 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKS 179
+KQ++ G H+ G+ +DRNL+E LF G ++VL T TLA G+NLPAH V+IK
Sbjct: 768 NKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKG 827
Query: 180 TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVE 239
TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + + Y LL +E
Sbjct: 828 TQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDRFGEGIIITTHDKLSHYLTLLTQQNPIE 887
Query: 240 SQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RKVISRD-RIE 297
SQ L + ++L AEI TV+++ +A++W+ +YLYVRM+ NP Y + K D +
Sbjct: 888 SQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQVDPTLA 947
Query: 298 KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQT-PVNCG 356
KH +++ ++ +L +MI +E + GR + YY+K++T++ + +
Sbjct: 948 KHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNEFFDAHKT 1007
Query: 357 LEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKI 416
D V AEE I++R E + L+ + ++ L G ++ KI
Sbjct: 1008 ESDIFAIVSKAEEFDQIKVREEEIEELDAL-LNNFCELA----APGG-----VENSYGKI 1057
Query: 417 FVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAKS 475
+L I + SL D ++ N +RI + + + + RK + L L+K
Sbjct: 1058 NILLQT-YISRGEMDSFSLISDSAYVAQNAARIVRALFEIAL-RKRWPAMTYRLLNLSKV 1115
Query: 476 LYQRLW 481
+ +RLW
Sbjct: 1116 IDKRLW 1121
Score = 84 (34.6 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
VR + +S + N D+A+WLN+ G+ F +RPV L +
Sbjct: 1484 VRIVGLSTALANARDLADWLNIHQMGLFNFRPSVRPVPLEVHI 1526
Score = 81 (33.6 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L
Sbjct: 637 STQSMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPL 681
Score = 37 (18.1 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 24 TIPNIEDIAEWLN 36
T+ N+E+ +W++
Sbjct: 906 TVTNVEEAVKWIS 918
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 458 (166.3 bits), Expect = 3.3e-40, Sum P(3) = 3.3e-40
Identities = 157/593 (26%), Positives = 284/593 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK-DREQQERLREASLSCSDKQMQSYILYG 130
L+F +RK + A+ L A+ +K D + L E + S +D ++ + YG
Sbjct: 777 LIFVHSRKETAKTAKYLRDKALEMETIGQILKSDSASRAILAEEAESVNDAALKDILPYG 836
Query: 131 VGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLY 190
G H+ GL L DR+ ++ LF G +QVL T TLA G+NLPAHTV+IK TQ ++ EKG +
Sbjct: 837 FGIHHAGLSLADRDSVQALFKDGSIQVLVCTATLAWGVNLPAHTVIIKGTQVYSPEKGSW 896
Query: 191 MEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHL 250
+E +LQM GRAGRP ++ G II+T + + Y +L+N +ESQL+S + +++
Sbjct: 897 VELSPQDVLQMLGRAGRPQYDTYGEGIIITTQAEIQYYLSLMNQQLPIESQLVSKLADNM 956
Query: 251 TAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRD-RIEKHMQEVCVQKVD 309
AEIV + + ++W+ +YL+VRM ++P YSV D +E+ ++
Sbjct: 957 NAEIVLGNIRTRDEGVDWLGYTYLFVRMLRSPGLYSVGADYENDDALEQKRVDLVHSAAV 1016
Query: 310 ELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTM-KYIMQTPVNCGLEDALHTVCHAE 368
L ++ D+ L+ E GR+ + YY+ ++M Y + G + ++
Sbjct: 1017 LLEKAGLVKYDKKTGRLQSTELGRIASHYYIGHNSMLTYNQHLQPSIGNIELFRIFALSD 1076
Query: 369 EIAWIQLRRNEK-KLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGD 427
E +I +R++EK +L ++ GR+ + K+ I KI VL I
Sbjct: 1077 EFKYIPVRQDEKLELAKML-----GRVPVPV-------KEGIDEPHAKINVLLQ-AYISR 1123
Query: 428 PSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAKSLYQRLWDD-SP 485
+ L+L D+ ++ + RI + + + + R+ + +AL L K +R+W SP
Sbjct: 1124 LKLEGLALMADLVYVTQSAGRILRALFEICL-RRGWASVAKNALDLCKMAERRMWPTMSP 1182
Query: 486 YLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPP- 544
L+Q P + + + + + + DP R+ + G G + + + P
Sbjct: 1183 --LRQFPRCPRDILQKSERIDVP-WGSYFDLDPPRMGELLGMPRA-GKTVCDLVSKFPRL 1238
Query: 545 KVDMKIEEIKCQGQGKSKLLITLTRL-SQSVQSTKRHYADMIVGAEENNMVLFHEK--IR 601
+V +++ I + + +L IT + + + T + + M+ + +LFH++ +R
Sbjct: 1239 EVQAQVQPIT-RSMLRVELTITPNFVWDEELHGTAQDFWIMVEDCDGEE-ILFHDQFVLR 1296
Query: 602 VDEFSSP-------YSVTVLSSNPQQGKLTVKAD--LIFEEYIGVDIHQKLVL 645
D S ++V + P +++ +D + E I V QKL+L
Sbjct: 1297 KDYAESEMNEHLVEFTVPITEPMPPNYFISLVSDRWMHSETRIAVSF-QKLIL 1348
Score = 355 (130.0 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 114/460 (24%), Positives = 207/460 (45%)
Query: 62 LMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDK 121
++Q S K AL+F RK + A L + F+ E L+ ++
Sbjct: 1607 ILQLSADKPALIFVPNRKQTRATAIDLLTACSIDDDEDRFL--HADIEELQPLLGRVHER 1664
Query: 122 QMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQ 181
+ + +G+GY++ L D+ ++ L+ G +QV+ + + +NL H VV+ TQ
Sbjct: 1665 TLAESLSHGIGYYHEALSQTDKRIVSHLYNIGAIQVVIASRDVCWELNLTGHLVVVMGTQ 1724
Query: 182 YFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQ 241
+F + Y+++ S ILQM G+A RP + G ++M Y+ LN VES
Sbjct: 1725 FFEGREHRYIDYPISEILQMFGKASRPGQDKVGRGVLMVPTVKREYYKKFLNEALPVESH 1784
Query: 242 LLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQ 301
L + + EI Q T++ +++W+ +Y Y R+ NP Y + IS + + +
Sbjct: 1785 LQLYMHDAFVTEISQGTIASTQDSVDWLTYTYFYRRLLANPSFYGLTD-ISHEGLSTFLS 1843
Query: 302 EVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLEDA 360
E+ + ELS ++I DE+ + P + Y + + TM+ +++ L+
Sbjct: 1844 ELVENTLKELSEAKIIDLDEEDDSVSPLNAASIGAYYNISYITMQTFLLSLSARTKLKGI 1903
Query: 361 LHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLA 420
L V A E +Q+RR+E+ +L + D R + + + K FVL
Sbjct: 1904 LEIVTAATEFESVQMRRHEEHILRRV-YD-----RVPVKTSQ----VAFDSPHFKSFVLL 1953
Query: 421 NDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRL 480
DL+ Q++ +S + ++ C+ D + + + A+N+ +++ + Q +
Sbjct: 1954 QAHFSRMQLPIDLAKDQEV-IVSKALNLLSACV-D-ILASEGHMNAMNAMEMSQMVVQAM 2010
Query: 481 WD-DSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADP 518
WD DSP LKQ+P G K + I FE + DP
Sbjct: 2011 WDRDSP--LKQIPHFGPEAIKVANEYNINDIFEFMDAMDP 2048
Score = 81 (33.6 bits), Expect = 3.3e-40, Sum P(3) = 3.3e-40
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
+VR + +SAT+PN D+A +L V P +G+ F RP L
Sbjct: 698 AVRIVGLSATLPNYRDVASFLRVDPAKGLFHFDGSYRPCPL 738
Score = 66 (28.3 bits), Expect = 5.5e-28, Sum P(3) = 5.5e-28
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 14 ASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+ +R + +S + N DI EW+ I F RPV L
Sbjct: 1540 SGMRIVGLSVPLSNARDIGEWIGASKHTIYNFSPHARPVPL 1580
Score = 42 (19.8 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 584 MIVGAEENNMVLFHEKIRVD---EFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVD 638
++VG E+ +L +++ + E Y+V P + +LT+ L+ + Y+GVD
Sbjct: 2135 LVVGDEKTRNLLAIKRVTIGRKLELRLDYTVPT----PGEHELTLY--LMCDSYVGVD 2186
Score = 37 (18.1 bits), Expect = 3.3e-40, Sum P(3) = 3.3e-40
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 672 CVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFS 706
C I+D+ + +E+ LL E + S S
Sbjct: 1637 CSIDDDEDRFLHADIEELQPLLGRVHERTLAESLS 1671
>UNIPROTKB|Q8N3C0 [details] [associations]
symbol:ASCC3 "Activating signal cointegrator 1 complex
subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
Length = 2202
Score = 445 (161.7 bits), Expect = 3.8e-40, Sum P(2) = 3.8e-40
Identities = 125/427 (29%), Positives = 209/427 (48%)
Query: 60 DILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCS 119
++L Q G +VF R A L + A G+ F + L E + S
Sbjct: 707 NVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRS 766
Query: 120 -DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIK 178
+KQ++ G H+ G+ +DRNL+E LF G ++VL T TLA G+NLPAH V+IK
Sbjct: 767 RNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIK 826
Query: 179 STQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMV 238
TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + + Y LL +
Sbjct: 827 GTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPI 886
Query: 239 ESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RKVISRD-RI 296
ESQ L + ++L AEI TV+++ +A++W+ +YLYVRM+ NP Y + K D +
Sbjct: 887 ESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTL 946
Query: 297 EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCG 356
KH +++ ++ +L QMI +E + GR + YY+K++T++ +
Sbjct: 947 RKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHK 1006
Query: 357 LE-DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEK 415
E D V AEE I++R E + L+ + + ++ G ++ K
Sbjct: 1007 TEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSNF-----CELSTPGG-----VENSYGK 1056
Query: 416 IFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAK 474
I +L I + SL D ++ N +RI + + + + RK + L L+K
Sbjct: 1057 INILLQT-YISRGEMDSFSLISDSAYVAQNAARIVRALFEIAL-RKRWPTMTYRLLNLSK 1114
Query: 475 SLYQRLW 481
+ +RLW
Sbjct: 1115 VIDKRLW 1121
Score = 438 (159.2 bits), Expect = 6.5e-40, Sum P(2) = 6.5e-40
Identities = 107/357 (29%), Positives = 179/357 (50%)
Query: 26 PNIEDIAEWLNVPVQGIKRFGEEMRP--VKLTTKVFDILMQYSRGKSALVFCSTRKGAQE 83
P++ + L V +QG G+ P + F + +S K L+F S+R+ +
Sbjct: 1515 PSVRPVP--LEVHIQGFP--GQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRL 1570
Query: 84 AAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143
A +L T ++ E++ + + D ++ + +G+G H+ GL +DR
Sbjct: 1571 TALELIAFLATEEDPKQWLNMDERE--MENIIATVRDSNLKLTLAFGIGMHHAGLHERDR 1628
Query: 144 NLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCG 203
+E LF+ VQVL T+TLA G+N PAH V+IK T+Y++ + Y++ + +LQM G
Sbjct: 1629 KTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMG 1688
Query: 204 RAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDIT 263
RAGRP F+D G +I+ Y+ L VES LL +++HL AEI T++
Sbjct: 1689 RAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQ 1748
Query: 264 QAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDG 323
A++++ +Y + R+ NP Y++ V S D + K + + + + EL I ED
Sbjct: 1749 DALDYITWTYFFRRLIMNPSYYNLGDV-SHDSVNKFLSHLIEKSLIELELSYCIEIGEDN 1807
Query: 324 FLLKPQEPGRLMTKYYLKFDTMKYIM-QTPVNCGLEDALHTVCHAEEIAWIQLRRNE 379
++P GR+ + YYLK T+K + C E+ L + AEE + +R NE
Sbjct: 1808 RSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNE 1864
Score = 85 (35.0 bits), Expect = 6.5e-40, Sum P(2) = 6.5e-40
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
VR + +S + N D+A+WLN+ G+ F +RPV L +
Sbjct: 1484 VRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHI 1526
Score = 80 (33.2 bits), Expect = 3.8e-40, Sum P(2) = 3.8e-40
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L
Sbjct: 637 STQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPL 681
Score = 37 (18.1 bits), Expect = 7.0e-35, Sum P(2) = 7.0e-35
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 24 TIPNIEDIAEWLN 36
T+ N+E+ +W++
Sbjct: 906 TVTNVEEAVKWIS 918
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 433 (157.5 bits), Expect = 4.9e-40, Sum P(2) = 4.9e-40
Identities = 158/606 (26%), Positives = 277/606 (45%)
Query: 40 QGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSN 99
+ IKRF + M + V++ +M+++ LVF +RK + A+ + +
Sbjct: 696 KAIKRF-QIMNEI-----VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLG 749
Query: 100 PFIKDREQQ-ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL 158
F+++ E LR + C + +++ + YG H+ G+ DR L+E LF +QVL
Sbjct: 750 LFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVL 809
Query: 159 CTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVII 218
+T TLA G+NLPAHTV+IK TQ ++ EKG + E ILQM GRAGRP ++ G I+
Sbjct: 810 VSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 869
Query: 219 MTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRM 278
+T + Y +LLN +ESQ++S + + L AEIV V + A+ W+ +YLY+RM
Sbjct: 870 ITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRM 929
Query: 279 KKNPQNYSV-RKVISRDRI-EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMT 336
++P Y + + D + ++ ++ L + ++ D+ + E GR+ +
Sbjct: 930 LRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIAS 989
Query: 337 KYYLKFDTMKYIMQT--PVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRL 394
YY+ DT++ Q P +E + E I +R EK L + ++ R+
Sbjct: 990 HYYITNDTVQTYNQLLKPTLSEIE-LFRVFSLSSEFKNITVREEEKLELQKL-LE---RV 1044
Query: 395 RFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMR 454
+ K+ I+ KI VL I + +L DM ++ + R+ + +
Sbjct: 1045 PIPV-------KESIEEPSAKINVLLQ-AFISQLKLEGFALMADMVYVTQSAGRLMRAIF 1096
Query: 455 DYFIFRKNYKGAVNSAL-LAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETL 513
+ + + + + L L K + +R+W S L+Q + K + FE L
Sbjct: 1097 E-IVLNRGWAQLTDKTLNLCKMIDKRMWQ-SMCPLRQFRKLPEEVVKKIEKKNFP-FERL 1153
Query: 514 AEADPRRI-EIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQ 572
+ + I E++ R G I + + L PK+++ + Q +S L + LT
Sbjct: 1154 YDLNHNEIGELI--RMPKMGKTIHK-YVHLFPKLELSVH---LQPITRSTLKVELTITPD 1207
Query: 573 SVQSTKRHYAD----MIVGAEENNMVLFHE------KIRVDEFSSPYSVTVLSSNPQQGK 622
K H + ++V ++ ++L HE K DE + V V P Q
Sbjct: 1208 FQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYF 1267
Query: 623 LTVKAD 628
+ V +D
Sbjct: 1268 IRVVSD 1273
Score = 402 (146.6 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 135/523 (25%), Positives = 232/523 (44%)
Query: 10 SSSLASVR----FLAVSATI-----PNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD 60
SSSL++ + +L SAT PN+ + L + +QG + R + + V+
Sbjct: 1491 SSSLSNAKDVAHWLGCSATSTFNFHPNVRPVP--LELHIQGFNISHTQTRLLSMAKPVYH 1548
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSD 120
+ ++S K +VF +RK + A + T F+ E+ L SD
Sbjct: 1549 AITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKD--LIPYLEKLSD 1606
Query: 121 KQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKST 180
++ +L GVGY + GL +R L+E LF G +QV+ + +L G+N+ AH V+I T
Sbjct: 1607 STLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT 1666
Query: 181 QYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVES 240
QY+N + Y+++ +LQM G A RP +D G +IM + ++ L VES
Sbjct: 1667 QYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVES 1726
Query: 241 QLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHM 300
L C+ +H AEIV T+ + A++++ ++LY RM +NP Y+++ IS + H+
Sbjct: 1727 HLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHLSDHL 1785
Query: 301 QEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLED 359
E+ Q + +L + I + ED + P G + YY+ + T++ + M +
Sbjct: 1786 SELVEQTLSDLEQSKCI-SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRG 1844
Query: 360 ALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRF-HINGDKGKRKKRIQTREEKIFV 418
+ + +A E I +R +E LL + +L N K +Q ++ +
Sbjct: 1845 LIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQL 1904
Query: 419 LANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQ 478
A L D I + R+ + D A+ + LA+ + Q
Sbjct: 1905 SAE-------------LQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQ 1951
Query: 479 RLWDDSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRR 520
+W YL KQLP K G++S F+ + D R
Sbjct: 1952 AMWSKDSYL-KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEER 1993
Score = 91 (37.1 bits), Expect = 4.9e-40, Sum P(2) = 4.9e-40
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 16 VRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
VR + +SAT+PN ED+A +L V P +G+ F RPV L
Sbjct: 646 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPL 685
Score = 71 (30.1 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+R +A+S+++ N +D+A WL F +RPV L
Sbjct: 1485 IRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPL 1523
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 432 (157.1 bits), Expect = 6.2e-40, Sum P(2) = 6.2e-40
Identities = 157/606 (25%), Positives = 277/606 (45%)
Query: 40 QGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSN 99
+ IKRF + M + V++ +M+++ LVF +RK + A+ + +
Sbjct: 696 KAIKRF-QIMNEI-----VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLG 749
Query: 100 PFIKDREQQ-ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL 158
F+++ E LR + C + +++ + YG H+ G+ DR L+E LF +QVL
Sbjct: 750 LFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVL 809
Query: 159 CTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVII 218
+T TLA G+NLPAHTV+IK TQ ++ EKG + E ILQM GRAGRP ++ G I+
Sbjct: 810 VSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 869
Query: 219 MTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRM 278
+T + Y +LLN +ESQ++S + + L AE+V V + A+ W+ +YLY+RM
Sbjct: 870 ITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEVVLGNVQNAKDAVNWLGYAYLYIRM 929
Query: 279 KKNPQNYSV-RKVISRDRI-EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMT 336
++P Y + + D + ++ ++ L + ++ D+ + E GR+ +
Sbjct: 930 LRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIAS 989
Query: 337 KYYLKFDTMKYIMQT--PVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRL 394
YY+ DT++ Q P +E + E I +R EK L + ++ R+
Sbjct: 990 HYYITNDTVQTYNQLLKPTLSEIE-LFRVFSLSSEFKNITVREEEKLELQKL-LE---RV 1044
Query: 395 RFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMR 454
+ K+ I+ KI VL I + +L DM ++ + R+ + +
Sbjct: 1045 PIPV-------KESIEEPSAKINVLLQ-AFISQLKLEGFALMADMVYVTQSAGRLMRAIF 1096
Query: 455 DYFIFRKNYKGAVNSAL-LAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETL 513
+ + + + + L L K + +R+W S L+Q + K + FE L
Sbjct: 1097 E-IVLNRGWAQLTDKTLNLCKMIDKRMWQ-SMCPLRQFRKLPEEVVKKIEKKNFP-FERL 1153
Query: 514 AEADPRRI-EIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQ 572
+ + I E++ R G I + + L PK+++ + Q +S L + LT
Sbjct: 1154 YDLNHNEIGELI--RMPKMGKTIHK-YVHLFPKLELSVH---LQPITRSTLKVELTITPD 1207
Query: 573 SVQSTKRHYAD----MIVGAEENNMVLFHE------KIRVDEFSSPYSVTVLSSNPQQGK 622
K H + ++V ++ ++L HE K DE + V V P Q
Sbjct: 1208 FQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYF 1267
Query: 623 LTVKAD 628
+ V +D
Sbjct: 1268 IRVVSD 1273
Score = 402 (146.6 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 135/523 (25%), Positives = 231/523 (44%)
Query: 10 SSSLASVR----FLAVSATI-----PNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD 60
SSSL++ + +L SAT PN+ + L + +QG + R + + V+
Sbjct: 1491 SSSLSNAKDVAHWLGCSATSTFNFHPNVRPVP--LELHIQGFNISHTQTRLLSMAKPVYH 1548
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSD 120
+ ++S K +VF +RK + A + T F+ E+ L SD
Sbjct: 1549 AITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKD--LIPYLEKLSD 1606
Query: 121 KQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKST 180
++ +L GVGY + GL +R L+E LF G +QV+ + +L G+N+ AH V+I T
Sbjct: 1607 STLKETLLNGVGYLHEGLSPLERRLVEQLFSSGAIQVVVASRSLCWGLNVAAHLVIIMDT 1666
Query: 181 QYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVES 240
QY+N + Y+++ +LQM G A RP +D G +IM + ++ L VES
Sbjct: 1667 QYYNGKTHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVES 1726
Query: 241 QLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHM 300
L C+ +H AEIV T+ + A++++ ++LY RM +NP Y+++ IS + H+
Sbjct: 1727 HLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHLSDHL 1785
Query: 301 QEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLED 359
E+ Q + +L + I + ED + P G + YY+ + T++ + M +
Sbjct: 1786 SELVEQTLSDLEQSKCI-SVEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRG 1844
Query: 360 ALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRF-HINGDKGKRKKRIQTREEKIFV 418
+ + +A E I +R +E LL + +L N K +Q ++ +
Sbjct: 1845 LIEIISNAAEYENIPIRHHEDSLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQL 1904
Query: 419 LANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQ 478
A L D I + R+ + D A+ + LA+ Q
Sbjct: 1905 SAE-------------LQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMATQ 1951
Query: 479 RLWDDSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRR 520
+W YL KQLP K G++S F+ + D R
Sbjct: 1952 AMWSKDSYL-KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEER 1993
Score = 91 (37.1 bits), Expect = 6.2e-40, Sum P(2) = 6.2e-40
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 16 VRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
VR + +SAT+PN ED+A +L V P +G+ F RPV L
Sbjct: 646 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPL 685
Score = 71 (30.1 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+R +A+S+++ N +D+A WL F +RPV L
Sbjct: 1485 IRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPL 1523
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 456 (165.6 bits), Expect = 7.8e-40, Sum P(3) = 7.8e-40
Identities = 137/490 (27%), Positives = 239/490 (48%)
Query: 40 QGIKRFGEEMRPVKLTTKVFDILMQYSRGKS-ALVFCSTRKGAQEAAQQLSQTAMTYGYS 98
+ +KRF + M V V+D +M+++ GKS LVF +RK + A+ + +
Sbjct: 689 KALKRF-QAMNEV-----VYDKIMEHA-GKSQVLVFVHSRKETAKTAKAIRDACLEKDTL 741
Query: 99 NPFIKDREQQ-ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQV 157
+ F+++ E LR + + ++ + YG H+ G+ DR L+E LF +QV
Sbjct: 742 SAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQV 801
Query: 158 LCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI 217
L +T TLA G+NLPAHTV+IK TQ +N EKG + E I+QM GRAGRP ++D G I
Sbjct: 802 LFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGI 861
Query: 218 IMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVR 277
++T + Y +L+N VESQ++S +T+ L AE+V TVS +++A W+ ++L+VR
Sbjct: 862 LITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVR 921
Query: 278 MKKNPQNYSVRKVISR-DRI-EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLM 335
M KNP Y + +R D + E+ ++ L +I D+ +++ E GR+
Sbjct: 922 MLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIA 981
Query: 336 TKYYLKFDTMKYIMQTPVN-CGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRL 394
+ +Y +++M+ + V C D + E + +R EK L + + + +
Sbjct: 982 SHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEK--LELQKMAEHAPI 1039
Query: 395 RFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMR 454
N D+ K + + I + +L DM ++ + R+ + +
Sbjct: 1040 PIKENLDEASAKTNVLLQ----------AYISQLKLEGFALQADMVFVAQSAGRLFRALF 1089
Query: 455 DYFIFRKNYKGAVNSAL-LAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIK--SFE 511
+ ++R + G L L K + QR W L L + ++ + S+ K SF+
Sbjct: 1090 EIVLWR-GWAGLAQKVLTLCKMVTQRQWGS----LNPLHQFKKIPSEVVRSIDKKNYSFD 1144
Query: 512 TLAEADPRRI 521
L + D ++
Sbjct: 1145 RLYDLDQHQL 1154
Score = 319 (117.4 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 133/611 (21%), Positives = 255/611 (41%)
Query: 69 KSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYIL 128
K ALVF R+ + A L A+ G F++ E + + D+ ++ +
Sbjct: 1554 KPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVS 1613
Query: 129 YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
GVG+ + G KD ++++ LF +QV + + I + A+ VV+ TQ++N +
Sbjct: 1614 CGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYH 1673
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTE 248
+Y ++ + +L M G A RP + ++M + Y+ L VES L C+ +
Sbjct: 1674 VYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHD 1733
Query: 249 HLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIE--KHMQEVCVQ 306
H AEIV T+ + AI+++ + LY RM +NP Y+++ R + + E+ ++
Sbjct: 1734 HFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLK 1793
Query: 307 KVDELSCHQMIWTDE-DGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLEDALHTV 364
++ C + DE D L G + + YY+ + T++ + M + +
Sbjct: 1794 DLENSKCIAV--KDEMDTVSLNL---GMIASYYYISYQTIELFSMSLKEKTKTRALIEII 1848
Query: 365 CHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCL 424
+ E + +R E +L + G+L+ ++ K+ +L + L
Sbjct: 1849 SASSEFGNVPMRHKEDVILRQLAERLPGQLK----------NQKFTDPHVKVNLLIHAHL 1898
Query: 425 IGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDS 484
+L+ +D I R+ + D A+++ L++ L Q ++ +
Sbjct: 1899 SRVKLTAELN--KDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNE 1956
Query: 485 PYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRRIEIVTGRKYPFGNHIKESLLSLP 543
PYL KQLP + + + S FE L + R +I+ + + P
Sbjct: 1957 PYL-KQLPHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELAD-VARFCNHYP 2014
Query: 544 P-KVDMKIEEIKCQGQGKSKLLITLTR------LSQSV------QSTKRHYADMIVGAEE 590
+V ++E L ++L R L+ V Q K +++G E
Sbjct: 2015 SIEVATELENDVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSE 2074
Query: 591 NNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKESN 650
+N +L +++ ++E SS V + + P+ G K I + Y+G D + E
Sbjct: 2075 SNALLTIKRLVINEKSS---VQLDFAAPRPGHHKFKLFFISDSYLGADQEFDVAFKVEEP 2131
Query: 651 SNVNRKCGHKQ 661
NRK H++
Sbjct: 2132 GRSNRKRKHEK 2142
Score = 75 (31.5 bits), Expect = 7.8e-40, Sum P(3) = 7.8e-40
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 17 RFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
R + +SAT+PN +D+A +L V + + F RPV L
Sbjct: 641 RLVGLSATLPNYQDVATFLRVKPEHLHFFDNSYRPVPL 678
Score = 71 (30.1 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 10 SSSLAS-VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRG 68
SS L S VR +A+S+++ N D+ WL F RPV L ++ + ++
Sbjct: 1472 SSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSHNAS 1531
Query: 69 KSA 71
+ A
Sbjct: 1532 RFA 1534
Score = 46 (21.3 bits), Expect = 2.5e-39, Sum P(4) = 2.5e-39
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 766 RKRFYEQRLQLHDELDVPEETEGSIFPRA-TLLNPSSGSTEAELKEHGFNSSLTAAGNLG 824
RK +L + D+L + + G++F + S E+ ++ +SSLT A +LG
Sbjct: 1436 RKSVQNVKLFIADDLHMIGASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLG 1495
Score = 41 (19.5 bits), Expect = 7.8e-40, Sum P(3) = 7.8e-40
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 978 EPSSSIKMLSFDISMMKKQKCSPNTSTRQCCPL--PLASTGKTKEV-DSFLGFESV 1030
E + K+L + ++K++ CS + P+ P+ + V D ++G E+V
Sbjct: 1219 EDTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETV 1274
Score = 37 (18.1 bits), Expect = 2.5e-39, Sum P(4) = 2.5e-39
Identities = 21/80 (26%), Positives = 31/80 (38%)
Query: 579 RHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVD 638
R +D +GAE + F I +++ P + L P + +F E G
Sbjct: 1262 RIVSDRWIGAETVLPISFRHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAES-GFK 1320
Query: 639 IH---QKLVL--VKESNSNV 653
+ Q V V ESN NV
Sbjct: 1321 VFNPIQTQVFRTVFESNENV 1340
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 456 (165.6 bits), Expect = 7.8e-40, Sum P(3) = 7.8e-40
Identities = 137/490 (27%), Positives = 239/490 (48%)
Query: 40 QGIKRFGEEMRPVKLTTKVFDILMQYSRGKS-ALVFCSTRKGAQEAAQQLSQTAMTYGYS 98
+ +KRF + M V V+D +M+++ GKS LVF +RK + A+ + +
Sbjct: 689 KALKRF-QAMNEV-----VYDKIMEHA-GKSQVLVFVHSRKETAKTAKAIRDACLEKDTL 741
Query: 99 NPFIKDREQQ-ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQV 157
+ F+++ E LR + + ++ + YG H+ G+ DR L+E LF +QV
Sbjct: 742 SAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQV 801
Query: 158 LCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI 217
L +T TLA G+NLPAHTV+IK TQ +N EKG + E I+QM GRAGRP ++D G I
Sbjct: 802 LFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGI 861
Query: 218 IMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVR 277
++T + Y +L+N VESQ++S +T+ L AE+V TVS +++A W+ ++L+VR
Sbjct: 862 LITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVR 921
Query: 278 MKKNPQNYSVRKVISR-DRI-EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLM 335
M KNP Y + +R D + E+ ++ L +I D+ +++ E GR+
Sbjct: 922 MLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIA 981
Query: 336 TKYYLKFDTMKYIMQTPVN-CGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRL 394
+ +Y +++M+ + V C D + E + +R EK L + + + +
Sbjct: 982 SHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEK--LELQKMAEHAPI 1039
Query: 395 RFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMR 454
N D+ K + + I + +L DM ++ + R+ + +
Sbjct: 1040 PIKENLDEASAKTNVLLQ----------AYISQLKLEGFALQADMVFVAQSAGRLFRALF 1089
Query: 455 DYFIFRKNYKGAVNSAL-LAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIK--SFE 511
+ ++R + G L L K + QR W L L + ++ + S+ K SF+
Sbjct: 1090 EIVLWR-GWAGLAQKVLTLCKMVTQRQWGS----LNPLHQFKKIPSEVVRSIDKKNYSFD 1144
Query: 512 TLAEADPRRI 521
L + D ++
Sbjct: 1145 RLYDLDQHQL 1154
Score = 319 (117.4 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 133/611 (21%), Positives = 255/611 (41%)
Query: 69 KSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYIL 128
K ALVF R+ + A L A+ G F++ E + + D+ ++ +
Sbjct: 1554 KPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVS 1613
Query: 129 YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
GVG+ + G KD ++++ LF +QV + + I + A+ VV+ TQ++N +
Sbjct: 1614 CGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYH 1673
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTE 248
+Y ++ + +L M G A RP + ++M + Y+ L VES L C+ +
Sbjct: 1674 VYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHD 1733
Query: 249 HLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIE--KHMQEVCVQ 306
H AEIV T+ + AI+++ + LY RM +NP Y+++ R + + E+ ++
Sbjct: 1734 HFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLK 1793
Query: 307 KVDELSCHQMIWTDE-DGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLEDALHTV 364
++ C + DE D L G + + YY+ + T++ + M + +
Sbjct: 1794 DLENSKCIAV--KDEMDTVSLNL---GMIASYYYISYQTIELFSMSLKEKTKTRALIEII 1848
Query: 365 CHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCL 424
+ E + +R E +L + G+L+ ++ K+ +L + L
Sbjct: 1849 SASSEFGNVPMRHKEDVILRQLAERLPGQLK----------NQKFTDPHVKVNLLIHAHL 1898
Query: 425 IGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDS 484
+L+ +D I R+ + D A+++ L++ L Q ++ +
Sbjct: 1899 SRVKLTAELN--KDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNE 1956
Query: 485 PYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRRIEIVTGRKYPFGNHIKESLLSLP 543
PYL KQLP + + + S FE L + R +I+ + + P
Sbjct: 1957 PYL-KQLPHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELAD-VARFCNHYP 2014
Query: 544 P-KVDMKIEEIKCQGQGKSKLLITLTR------LSQSV------QSTKRHYADMIVGAEE 590
+V ++E L ++L R L+ V Q K +++G E
Sbjct: 2015 SIEVATELENDVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSE 2074
Query: 591 NNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKESN 650
+N +L +++ ++E SS V + + P+ G K I + Y+G D + E
Sbjct: 2075 SNALLTIKRLVINEKSS---VQLDFAAPRPGHHKFKLFFISDSYLGADQEFDVAFKVEEP 2131
Query: 651 SNVNRKCGHKQ 661
NRK H++
Sbjct: 2132 GRSNRKRKHEK 2142
Score = 75 (31.5 bits), Expect = 7.8e-40, Sum P(3) = 7.8e-40
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 17 RFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
R + +SAT+PN +D+A +L V + + F RPV L
Sbjct: 641 RLVGLSATLPNYQDVATFLRVKPEHLHFFDNSYRPVPL 678
Score = 71 (30.1 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 10 SSSLAS-VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRG 68
SS L S VR +A+S+++ N D+ WL F RPV L ++ + ++
Sbjct: 1472 SSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSHNAS 1531
Query: 69 KSA 71
+ A
Sbjct: 1532 RFA 1534
Score = 46 (21.3 bits), Expect = 2.5e-39, Sum P(4) = 2.5e-39
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 766 RKRFYEQRLQLHDELDVPEETEGSIFPRA-TLLNPSSGSTEAELKEHGFNSSLTAAGNLG 824
RK +L + D+L + + G++F + S E+ ++ +SSLT A +LG
Sbjct: 1436 RKSVQNVKLFIADDLHMIGASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLG 1495
Score = 41 (19.5 bits), Expect = 7.8e-40, Sum P(3) = 7.8e-40
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 978 EPSSSIKMLSFDISMMKKQKCSPNTSTRQCCPL--PLASTGKTKEV-DSFLGFESV 1030
E + K+L + ++K++ CS + P+ P+ + V D ++G E+V
Sbjct: 1219 EDTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETV 1274
Score = 37 (18.1 bits), Expect = 2.5e-39, Sum P(4) = 2.5e-39
Identities = 21/80 (26%), Positives = 31/80 (38%)
Query: 579 RHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVD 638
R +D +GAE + F I +++ P + L P + +F E G
Sbjct: 1262 RIVSDRWIGAETVLPISFRHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAES-GFK 1320
Query: 639 IH---QKLVL--VKESNSNV 653
+ Q V V ESN NV
Sbjct: 1321 VFNPIQTQVFRTVFESNENV 1340
>UNIPROTKB|F6Y2F0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
Uniprot:F6Y2F0
Length = 2202
Score = 441 (160.3 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
Identities = 123/426 (28%), Positives = 209/426 (49%)
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCS- 119
+L Q G +VF R A L + A G + F+ + + E + S
Sbjct: 708 VLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPSQGSEYGHAEKQVQKSR 767
Query: 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKS 179
+KQ++ G H+ G+ +DRNL+E LF G ++VL T TLA G+NLPAH V+IK
Sbjct: 768 NKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKG 827
Query: 180 TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVE 239
TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + + Y LL +E
Sbjct: 828 TQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDRFGEGIIITTHDKLSHYLTLLTQQNPIE 887
Query: 240 SQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RKVISRD-RIE 297
SQ L + ++L AEI TV+++ +A++W+ +YLYVRM+ NP Y + K D +
Sbjct: 888 SQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQVDPTLA 947
Query: 298 KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQT-PVNCG 356
KH +++ ++ +L +MI +E + GR + YY+K++T++ + +
Sbjct: 948 KHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNEFFDAHKT 1007
Query: 357 LEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKI 416
D V AEE I++R E + L+ + ++ L G ++ KI
Sbjct: 1008 ESDIFAIVSKAEEFDQIKVREEEIEELDAL-LNNFCELA----APGG-----VENSYGKI 1057
Query: 417 FVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAKS 475
+L I + SL D ++ N +RI + + + + RK + L L+K
Sbjct: 1058 NILLQT-YISRGEMDSFSLISDSAYVAQNAARIVRALFEIAL-RKRWPAMTYRLLNLSKV 1115
Query: 476 LYQRLW 481
+ +RLW
Sbjct: 1116 IDKRLW 1121
Score = 441 (160.3 bits), Expect = 7.2e-39, Sum P(3) = 7.2e-39
Identities = 109/358 (30%), Positives = 180/358 (50%)
Query: 26 PNIEDIAEWLNVPVQGIKRFGEEMRP--VKLTTKVFDILMQYSRGKSALVFCSTRKGAQE 83
P++ + L V +QG G+ P + F + +S K L+F S+R+ +
Sbjct: 1515 PSVRPVP--LEVHIQGFP--GQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRL 1570
Query: 84 AAQQLSQTAMTYGYSNPFIK-DREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKD 142
A +L T ++ D + E + + D ++ + +G+G H+ GL +D
Sbjct: 1571 TALELIAFLATEEDPKQWLNMDEREMENIIG---TLRDSNLKLTLAFGIGMHHAGLHERD 1627
Query: 143 RNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMC 202
R +E LF+ VQVL T+TLA G+N PAH V+IK T+Y++ + Y++ + +LQM
Sbjct: 1628 RKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMM 1687
Query: 203 GRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDI 262
GRAGRP F+D G +I+ Y+ L VES LL +++HL AEI T++
Sbjct: 1688 GRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSK 1747
Query: 263 TQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDED 322
A++++ +Y + R+ NP Y++ V S D + K + + + + EL I ED
Sbjct: 1748 QDAMDYITWTYFFRRLIMNPSYYNLSDV-SHDSVNKFLSSLVEKSLVELEHSYCIEIGED 1806
Query: 323 GFLLKPQEPGRLMTKYYLKFDTMKYIMQT-PVNCGLEDALHTVCHAEEIAWIQLRRNE 379
++P GR+ + YYLK T+K + CG E+ L + AEE + +R NE
Sbjct: 1807 NRSIEPLTYGRIASYYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTDLPVRHNE 1864
Score = 84 (34.6 bits), Expect = 7.2e-39, Sum P(3) = 7.2e-39
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
VR + +S + N D+A+WLN+ G+ F +RPV L +
Sbjct: 1484 VRIVGLSTALANARDLADWLNIHQMGLFNFRPSVRPVPLEVHI 1526
Score = 81 (33.6 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L
Sbjct: 637 STQSMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPL 681
Score = 39 (18.8 bits), Expect = 7.2e-39, Sum P(3) = 7.2e-39
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 419 LANDCLIGDPSVHDLSLTQDMNSISTN-GSRIAKCMRD 455
L +DC +G +DL L S+S +++ + D
Sbjct: 2161 LMSDCYLGLDQQYDLHLHVTEASVSAQVNEEVSEALTD 2198
Score = 37 (18.1 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 24 TIPNIEDIAEWLN 36
T+ N+E+ +W++
Sbjct: 906 TVTNVEEAVKWIS 918
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 434 (157.8 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 158/606 (26%), Positives = 273/606 (45%)
Query: 40 QGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSN 99
+ IKRF + M + V++ +M+++ LVF +RK + A+ + +
Sbjct: 693 KAIKRF-QIMNEI-----VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLG 746
Query: 100 PFIKDREQQ-ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL 158
F+++ E LR + C + +++ + YG H+ G+ DR L+E LF +QVL
Sbjct: 747 LFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVL 806
Query: 159 CTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVII 218
+T TLA G+NLPAHTV+IK TQ ++ EKG + E ILQM GRAGRP ++ G I+
Sbjct: 807 VSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDSKGEGIL 866
Query: 219 MTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRM 278
+T + Y +LLN +ESQ++ + + L AEIV V + A+ W+ +YLYVRM
Sbjct: 867 ITSHGELQYYLSLLNQQLPIESQMVGKLADMLNAEIVLGNVQNAKDAVNWLGYTYLYVRM 926
Query: 279 KKNPQNYSV-RKVISRDRI-EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMT 336
+NP Y V S D + E+ ++ L + ++ D+ + + GR+ +
Sbjct: 927 LRNPTLYGVSHDDRSIDPLLERRRMDLVHTAATVLEKNNLVKYDKRSGSFQVTDLGRIAS 986
Query: 337 KYYLKFDT-MKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLR 395
+Y+ ++ M Y + + E I +R EK L + ++ R+
Sbjct: 987 HFYITHESIMTYNQLLKPTLSEIELFRVFSLSSEFRNITVREEEKLELQKL-LE---RVP 1042
Query: 396 FHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRD 455
+ K+ I+ KI VL I + +L DM ++ + R+ + + +
Sbjct: 1043 IPV-------KESIEEPSAKINVLLQ-AYISQLKLEGFALMADMVYVTQSAGRLMRAIFE 1094
Query: 456 YFIFRKNYKGAVNSAL-LAKSLYQRLWDD-SPYLLKQLPGIGMVTAKALHSMGIKSFETL 513
+ + + + L L K + +R+W SP L+Q + K + FE L
Sbjct: 1095 -IVLSRGWAQLTDKTLNLCKMIDKRMWQSMSP--LRQFRKLPEEVIKKIEKKNFP-FERL 1150
Query: 514 AEADPRRI-EIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQ 572
+ + I E++ R G I + + P K+D+ + Q +S L + LT
Sbjct: 1151 YDLNHNEIGELI--RMPKMGKTIHKYVHQFP-KLDLAVH---LQPITRSTLKVELTITPD 1204
Query: 573 SVQSTKRHYAD----MIVGAEENNMVLFHE------KIRVDEFSSPYSVTVLSSNPQQGK 622
K H + ++V ++ +VL HE K DE + V V P Q
Sbjct: 1205 FQWDDKIHGSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEHLVTFFVPVFEPLPPQYF 1264
Query: 623 LTVKAD 628
+ + +D
Sbjct: 1265 IRIASD 1270
Score = 384 (140.2 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 122/498 (24%), Positives = 219/498 (43%)
Query: 26 PNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAA 85
PN+ + L + +QG + R + + V+ +M++S K LVF +R+ + A
Sbjct: 1512 PNVRPVP--LELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPVLVFVPSRRQTRLTA 1569
Query: 86 QQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145
+ F+ E+ L + SD ++ + GVGY + GL +R +
Sbjct: 1570 IDILTFCAADVVPQRFLHSTEKD--LVPFMENLSDVTLKETLSNGVGYLHEGLSPTERRI 1627
Query: 146 IEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRA 205
+E LF G +QV+ + +L G N+ AH V++ TQY+N + Y+++ +LQM G+A
Sbjct: 1628 VEHLFTSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDVLQMVGKA 1687
Query: 206 GRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQA 265
RP +D G +IM + ++ L VES L C+ +H AEIV TV + A
Sbjct: 1688 NRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKTVENKQDA 1747
Query: 266 IEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFL 325
++++ ++LY RM +NP Y+++ + R + H+ E+ + +L + I + ED
Sbjct: 1748 VDYLTWTFLYRRMTQNPNYYNLQGMSHR-HLSDHLSELVENTLQDLEQSKCI-SIEDEMD 1805
Query: 326 LKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLN 384
+ P G + YY+ + T++ + M + + + +A E I +R +E LL
Sbjct: 1806 VAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYKNIPIRHHEDTLLR 1865
Query: 385 VINIDKDGRLRF-HINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSIS 443
+ +L N K +Q ++ + A L D I
Sbjct: 1866 QLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAE-------------LQSDTEEIL 1912
Query: 444 TNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALH 503
+ R+ + D A+ + LA+ + Q +W YL +QLP K
Sbjct: 1913 SKAVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYL-RQLPHFTSELIKRCT 1971
Query: 504 SMGIKS-FETLAEADPRR 520
G++S F+ + D R
Sbjct: 1972 DKGVESIFDIMEMEDEDR 1989
Score = 86 (35.3 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 16 VRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
VR + +SAT+PN ED+A L V P +G+ F RPV L
Sbjct: 643 VRLIGLSATLPNYEDVATCLRVDPSKGLFYFDNSFRPVPL 682
Score = 71 (30.1 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+R +A+S+++ N +D+A WL F +RPV L
Sbjct: 1481 IRIVALSSSLSNAKDVAHWLGCSTTATFNFHPNVRPVPL 1519
>UNIPROTKB|E1BNG3 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 Uniprot:E1BNG3
Length = 2201
Score = 440 (159.9 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 108/358 (30%), Positives = 180/358 (50%)
Query: 26 PNIEDIAEWLNVPVQGIKRFGEEMRP--VKLTTKVFDILMQYSRGKSALVFCSTRKGAQE 83
P++ + L V +QG G+ P + F + +S K L+F S+R+ +
Sbjct: 1515 PSVRPVP--LEVHIQGFP--GQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRL 1570
Query: 84 AAQQLSQTAMTYGYSNPFIK-DREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKD 142
A +L T ++ D + E + + D ++ + +G+G H+ GL +D
Sbjct: 1571 TALELIAFLATEEDPKQWLNMDEREMENIIG---TIRDSNLKLTLAFGIGMHHAGLHERD 1627
Query: 143 RNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMC 202
R +E LF+ +QVL T+TLA G+N PAH V+IK T+Y++ + Y++ + +LQM
Sbjct: 1628 RKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMM 1687
Query: 203 GRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDI 262
GRAGRP F+D G +I+ Y+ L VES LL +++HL AEI T++
Sbjct: 1688 GRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSK 1747
Query: 263 TQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDED 322
A++++ +Y + R+ NP Y++ V S D + K + + + + EL I ED
Sbjct: 1748 QDAMDYITWTYFFRRLIMNPSYYNLSDV-SHDSVNKFLSNLVEKSLVELEHSYCIEIGED 1806
Query: 323 GFLLKPQEPGRLMTKYYLKFDTMKYIMQT-PVNCGLEDALHTVCHAEEIAWIQLRRNE 379
++P GR+ + YYLK T+K + CG E+ L + AEE + +R NE
Sbjct: 1807 NRSIEPLTYGRIASYYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTDLPVRHNE 1864
Score = 439 (159.6 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 122/426 (28%), Positives = 209/426 (49%)
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCS- 119
+L Q G +VF R A L + A G F+ + + E + S
Sbjct: 708 VLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNNGQICYFLPTQGPEYGHAEKQVQKSR 767
Query: 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKS 179
++Q++ G H+ G+ +DRNL+E LF G ++VL T TLA G+NLPAH V+IK
Sbjct: 768 NRQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKG 827
Query: 180 TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVE 239
TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + + Y +LL +E
Sbjct: 828 TQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIE 887
Query: 240 SQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RKVISRD-RIE 297
SQ L + ++L AEI TV+++ +A++W+ +YLYVRM+ NP Y + K D +
Sbjct: 888 SQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLA 947
Query: 298 KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQT-PVNCG 356
KH +++ ++ +L +MI +E + GR + YY+K++T++ + +
Sbjct: 948 KHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKT 1007
Query: 357 LEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKI 416
D V AEE I++R E + L+ + + ++ G ++ KI
Sbjct: 1008 ESDIFAIVSKAEEFDQIKVREEEIEELDTLLSNF-----CELSAPGG-----VENSYGKI 1057
Query: 417 FVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAKS 475
+L I V SL D ++ N +RI + + + + RK + L L+K
Sbjct: 1058 NILLQT-YISRGEVDSFSLISDSAYVAQNAARIVRALFEIAL-RKRWPAMTYRLLNLSKV 1115
Query: 476 LYQRLW 481
+ +RLW
Sbjct: 1116 IDKRLW 1121
Score = 84 (34.6 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
VR + +S + N D+A+WLN+ G+ F +RPV L +
Sbjct: 1484 VRIVGLSTALANARDLADWLNIRQMGLFNFRPSVRPVPLEVHI 1526
Score = 80 (33.2 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L
Sbjct: 637 STQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPVPL 681
Score = 43 (20.2 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 421 NDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRD 455
+DC +G +D+ L SIS I+ + D
Sbjct: 2163 SDCYLGLDQQYDIHLHVTPASISAQADEISDALTD 2197
Score = 37 (18.1 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 24 TIPNIEDIAEWLN 36
T+ N+E+ +W++
Sbjct: 906 TVTNVEEAVKWIS 918
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 426 (155.0 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 155/607 (25%), Positives = 280/607 (46%)
Query: 40 QGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSN 99
+ IKRF + M + V++ +M+++ LVF +RK + A+ + +
Sbjct: 696 KAIKRF-QIMNEI-----VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLG 749
Query: 100 PFIKDREQQ-ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL 158
F+++ E LR + C + +++ + YG H+ G+ DR L+E LF +QVL
Sbjct: 750 LFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVL 809
Query: 159 CTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVII 218
+T TLA G+NLPAHTV+IK TQ ++ EKG + E ILQM GRAGRP ++ G I+
Sbjct: 810 VSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 869
Query: 219 MTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRM 278
+T + Y +LLN +ESQ++S + + L AEIV V + A+ W+ +YLY+RM
Sbjct: 870 ITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRM 929
Query: 279 KKNPQNYSV-RKVISRDRI-EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMT 336
++P Y + + D + ++ ++ L + ++ D+ + E GR+ +
Sbjct: 930 LRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIAS 989
Query: 337 KYYLKFDTMKYIMQT--PVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRL 394
YY+ DT++ Q P +E + E I +R EK L + ++ R+
Sbjct: 990 HYYITNDTVQTYNQLLKPTLSEIE-LFRVFSLSSEFKNITVREEEKLELQKL-LE---RV 1044
Query: 395 RFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMR 454
+ K+ I+ KI VL I + +L DM ++ + R+ + +
Sbjct: 1045 PIPV-------KESIEEPSAKINVLLQ-AFISQLKLEGFALMADMVYVTQSAGRLMRAIF 1096
Query: 455 DYFIFRKNYKGAVNSAL-LAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETL 513
+ + + + + L L K + +R+W S L+Q + K + FE L
Sbjct: 1097 E-IVLNRGWAQLTDKTLNLCKMIDKRMWQ-SMCPLRQFRKLPEEVVKKIEKKNFP-FERL 1153
Query: 514 AEADPRRI-EIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQ 572
+ + I E++ R G I + + L PK+++ + ++ + K+ +T+T Q
Sbjct: 1154 YDLNHNEIGELI--RMPKMGKTIHK-YVHLFPKLELSVH-LQPITRSTLKVELTITPDFQ 1209
Query: 573 SVQSTKRHYAD-----MIVGAEENNMVLFHE------KIRVDEFSSPYSVTVLSSNPQQG 621
+ + + ++V ++ ++L HE K DE + V V P Q
Sbjct: 1210 WDEKARLVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQY 1269
Query: 622 KLTVKAD 628
+ V +D
Sbjct: 1270 FIRVVSD 1276
Score = 402 (146.6 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 135/523 (25%), Positives = 232/523 (44%)
Query: 10 SSSLASVR----FLAVSATI-----PNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD 60
SSSL++ + +L SAT PN+ + L + +QG + R + + V+
Sbjct: 1494 SSSLSNAKDVAHWLGCSATSTFNFHPNVRPVP--LELHIQGFNISHTQTRLLSMAKPVYH 1551
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSD 120
+ ++S K +VF +RK + A + T F+ E+ L SD
Sbjct: 1552 AITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKD--LIPYLEKLSD 1609
Query: 121 KQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKST 180
++ +L GVGY + GL +R L+E LF G +QV+ + +L G+N+ AH V+I T
Sbjct: 1610 STLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT 1669
Query: 181 QYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVES 240
QY+N + Y+++ +LQM G A RP +D G +IM + ++ L VES
Sbjct: 1670 QYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVES 1729
Query: 241 QLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHM 300
L C+ +H AEIV T+ + A++++ ++LY RM +NP Y+++ IS + H+
Sbjct: 1730 HLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHLSDHL 1788
Query: 301 QEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLED 359
E+ Q + +L + I + ED + P G + YY+ + T++ + M +
Sbjct: 1789 SELVEQTLSDLEQSKCI-SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRG 1847
Query: 360 ALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRF-HINGDKGKRKKRIQTREEKIFV 418
+ + +A E I +R +E LL + +L N K +Q ++ +
Sbjct: 1848 LIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQL 1907
Query: 419 LANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQ 478
A L D I + R+ + D A+ + LA+ + Q
Sbjct: 1908 SAE-------------LQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQ 1954
Query: 479 RLWDDSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRR 520
+W YL KQLP K G++S F+ + D R
Sbjct: 1955 AMWSKDSYL-KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEER 1996
Score = 91 (37.1 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 16 VRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
VR + +SAT+PN ED+A +L V P +G+ F RPV L
Sbjct: 646 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPL 685
Score = 71 (30.1 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+R +A+S+++ N +D+A WL F +RPV L
Sbjct: 1488 IRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPL 1526
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 440 (159.9 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 139/509 (27%), Positives = 241/509 (47%)
Query: 59 FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK-DREQQERLREASLS 117
++ +MQ++ L+F +RK + A+ + A+ ++ D +E LR + S
Sbjct: 748 YEKVMQHAGKNQVLIFVHSRKETAKTARFIRDKALEEETIGHLLRSDAASREILRAEADS 807
Query: 118 CSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVI 177
SD+ ++ + YG H+ G+ +DR E LF G +QVL +T TLA G+NLPAHTV+I
Sbjct: 808 TSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVII 867
Query: 178 KSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEM 237
K TQ ++ EKG++ E +LQM GRAGRP F+ G II+T + Y +L+N
Sbjct: 868 KGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLP 927
Query: 238 VESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDR-- 295
+ESQ + + + L AE+ TV I ++W+ +YLYVRM ++P YSV D+
Sbjct: 928 IESQFMRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSVGPEYDDDKYL 987
Query: 296 IEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTM----KYIMQT 351
++K + + C +++ + G L E G++ YY+ ++M + +MQT
Sbjct: 988 VQKRADLLHSAAILLEKCKLLVYNRQSG-TLTATELGKVAASYYVTHNSMAIYNRLLMQT 1046
Query: 352 PVNCGLEDALHTVCHAEEIAWIQLRRNEK-KLLNVINIDKDGRLRFHINGDKGKRKKRIQ 410
+ ++E I +R EK +L ++ R+ I ++R+
Sbjct: 1047 T---SFIELFRVFSFSDEFKHIPVREEEKVELAKLLE-----RVPIPI-------RERLD 1091
Query: 411 TREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSA 470
KI L I + +L DM ++ + RI + + + + R+ + +
Sbjct: 1092 EPAAKINALLQS-YISRQRLDGFALVADMVYVTQSAGRIMRAIFEISL-RRGWSSVATLS 1149
Query: 471 L-LAKSLYQRLWDD-SPYLLKQLPGIGMVTAKALHSMGIKSF--ETLAEADPRRI-EIVT 525
L K + +RLW SP L+Q P ++ + + K F + + DP + E+V
Sbjct: 1150 LDTCKMIEKRLWPTMSP--LRQFPNC---PSEVIRRVEKKEFPWQRYFDLDPAELGELVG 1204
Query: 526 GRKYPFGNHIKESLLSLPP-KVDMKIEEI 553
K G + + S P V+ ++ I
Sbjct: 1205 VPKE--GRRVYNMVQSFPRLSVEAHVQPI 1231
Score = 315 (115.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 140/659 (21%), Positives = 279/659 (42%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV--FDI------LMQYS 66
++R + +S ++ N D+ EWL Q I F + RP LT + F I ++ S
Sbjct: 1522 NIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSFSITHFPSLMLAMS 1581
Query: 67 RG--KSALVFCSTRKGA------QEAAQQLSQTAMTYGYSNPFIKDREQQERLR-EASLS 117
+ +S F S RK ++ A+QL+ +T+ ++ +D + EA
Sbjct: 1582 KPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMAD---EDEYLFSLMENEAFNK 1638
Query: 118 CSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVI 177
D +Q + +G+ Y + D+N+++ L+ G ++VL + + + + ++ V++
Sbjct: 1639 VEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIV 1698
Query: 178 KSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEM 237
TQY++ ++ Y+++ S +LQM G ++ VI+MT Y+ LN
Sbjct: 1699 MGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKFLNEPLP 1758
Query: 238 VESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIE 297
+ES L + + +EI T+ A++W+ SY+Y R+ NP Y ++ I+ + +
Sbjct: 1759 MESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGLQD-ITHESVS 1817
Query: 298 KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCG 356
+ + ++ +++LS ++I D++ + + Y + + TM+ + +
Sbjct: 1818 EFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTFALSLSERTK 1877
Query: 357 LEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKI 416
++ L V A E + +R+ E +L I+ RL ++ + K
Sbjct: 1878 MKGLLEIVTSAAEYEQLPIRKYEDIVLERIH----SRLPVRLSNPN------YEDPHTKS 1927
Query: 417 FVLANDCLIGDPSVHDL--SLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAK 474
F+L L S +L L D I T + D + + +++
Sbjct: 1928 FIL----LAAHFSRFELPPGLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQ 1983
Query: 475 SLYQRLWD-DSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRRIEIVTGRKYPFG 532
+ Q LWD DSP LKQ+P + + G+ F+ + D +R E++
Sbjct: 1984 MVTQALWDRDSP--LKQIPYFDDALIERCNKEGVHDVFDIIDLDDEKRTELLHMDNAHLA 2041
Query: 533 NHIKESLLSLPP-KVDMKIEEIK-CQGQGKSKLLITLTR-LSQSVQSTKRHYADMIVGAE 589
E + P +D +IE+ + S L++ LTR L + + A +
Sbjct: 2042 K-CAEFINKYPDIDIDFEIEDSEDVHANSPSVLIVQLTRELEEDEEVDTTVIAPYFPAQK 2100
Query: 590 ENN--MVLFHEK--IRVDEFSSPYSVTVLSS--NPQQGKLTVKADLIFEEYIGVDIHQK 642
+ +V+ +K + + + + S+T P G L K + Y+GVD ++
Sbjct: 2101 TEHWWLVISDDKTLLAIKKITLGRSLTTKMEFVPPAMGTLKYKLSCFSDSYMGVDYEKE 2159
Score = 83 (34.3 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 9 KSSSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTKVFDI 61
+ +L VR + +SAT+PN D+A +L+V P +G+ F RP L + I
Sbjct: 678 QEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGI 731
Score = 37 (18.1 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 876 PVFNSNISKTMESDSAIQTNEHFPANQSEFCIAASDVTKD 915
P+ S + + +S ++H F I DV D
Sbjct: 1230 PITRSLVRVELVINSQFNWDDHLSGTSEAFWILVEDVDGD 1269
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 414 (150.8 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 129/493 (26%), Positives = 224/493 (45%)
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK-DREQQERLREASLSCS 119
+L + G +VF +RK A L ++ K D ++ L+ + +
Sbjct: 730 VLESINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVL 789
Query: 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKS 179
D ++ I G+G H+ GL DR+L E LF G +QVL T TLA G+NLPAHTV+IK
Sbjct: 790 DPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKG 849
Query: 180 TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVE 239
T ++ EKG + + +LQM GRAGRP ++ G II+T + V Y ++LN +E
Sbjct: 850 TDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIE 909
Query: 240 SQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKH 299
SQ +S + ++L AE+V + A+ W+ +YLYVRM +P Y V + S +++K
Sbjct: 910 SQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKVPDISSDGQLKKF 969
Query: 300 MQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLE 358
+ + + L +++ D + +++ + G + + +Y+ +M Y + +
Sbjct: 970 RESLVHSALCILKEQELVLYDAENDVIEATDLGNIASSFYINHASMDVYNRELDEHTTQI 1029
Query: 359 DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFV 418
D +EE ++ +R EK+ L + ++K I D I K+ V
Sbjct: 1030 DLFRIFSMSEEFKYVSVRYEEKRELKQL-LEK---APIPIRED-------IDDPLAKVNV 1078
Query: 419 LANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAKSLY 477
L +L D+ I N R+ + M + + ++ + L L KS
Sbjct: 1079 LLQS-YFSQLKFEGFALNSDIVFIHQNAGRLLRAMFEICL-KRGWGHPTRMLLNLCKSAT 1136
Query: 478 QRLWDDS-PYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI-EIVTGRKYPFGNHI 535
++W + P L+Q + K L + + + L P + + KY G +
Sbjct: 1137 TKMWPTNCP--LRQFKTCPVEVIKRLEASTVPWGDYLQLETPAEVGRAIRSEKY--GKQV 1192
Query: 536 KESLLSLPPKVDM 548
+ LL PK+ +
Sbjct: 1193 YD-LLKRFPKMSV 1204
Score = 230 (86.0 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 141/675 (20%), Positives = 269/675 (39%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFG--EEMRPVKLTTKVF-DI--------LMQ 64
+RF+ +S + N D EW + I F E + P+++ + F D+ ++Q
Sbjct: 1506 IRFVCLSNCLANARDFGEWAGMTKSNIYNFSPSERIEPLEINIQSFKDVEHISFNFSMLQ 1565
Query: 65 YSRGKSAL---------VFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREAS 115
+ SA VF +RK E A M + + + ++E++
Sbjct: 1566 MAFEASAAAAGNRNSSSVFLPSRKDCMEVASAF----MKFSKAIEWDMLNVEEEQIVPYI 1621
Query: 116 LSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTV 175
+D +++ + +GVG G+ D +++ L+ G V VL + + V
Sbjct: 1622 EKLTDGHLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCS-AFACKTDEV 1680
Query: 176 VIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDT--GTVIIMTRRETVHLYENLLN 233
+I T ++ + YM + + +L+M G A ND+ G V+I+T Y+ L
Sbjct: 1681 IILGTNLYDGAEHKYMPYTINELLEMVGLASG---NDSMAGKVLILTSHNMKAYYKKFLI 1737
Query: 234 GCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISR 293
ES L + + L EI + ++W SY Y R+ NP Y VR S
Sbjct: 1738 EPLPTESYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDT-SP 1796
Query: 294 DRIE---KHMQEVCVQKVDELSCHQMIWT------------DEDGFLLKPQEPGRLMTKY 338
I ++ E C+ + E S ++ T DE ++ G + + Y
Sbjct: 1797 HGISVFLSNLVETCLNDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHY 1856
Query: 339 YLKFDTMKYIMQTPVNCG-LEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFH 397
+ F T++ + + N L++ L+ + A E + LR+ ++ LL + + K LRF
Sbjct: 1857 GVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALL--VKLSKRLPLRFP 1914
Query: 398 INGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYF 457
+ G + K+F+L + + D+ I + + D
Sbjct: 1915 EHTSSG-------SVSFKVFLLLQ-AYFSRLEL-PVDFQNDLKDILEKVVPLINVVVD-I 1964
Query: 458 IFRKNYKGAVNSALLAKSLYQRLWD-DSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAE 515
+ Y A + LA+ L Q +WD D+P L+Q+P + + +++ ++ +A
Sbjct: 1965 LSANGYLNATTAMDLAQMLIQGVWDVDNP--LRQIPHFNNKILEKCKEINVETVYDIMAL 2022
Query: 516 ADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDM--KIEEIKCQGQG-KSKLLITLTR--L 570
D R EI+T + ++ P V++ + G K K+ I LTR
Sbjct: 2023 EDEERDEILTLTDSQLAQ--VAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVE 2080
Query: 571 SQSVQSTKRHYA-D------MIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKL 623
+++Q T Y D +++G + +K+ +++ + Y + P GK
Sbjct: 2081 PENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEF--DTPTSGKH 2138
Query: 624 TVKADLIFEEYIGVD 638
+ + + Y+ D
Sbjct: 2139 NLTIWCVCDSYLDAD 2153
Score = 88 (36.0 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 17 RFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLT 55
R + +SAT+PN ED+ +L VP +G+ F RP L+
Sbjct: 666 RIIGLSATLPNYEDVGRFLRVPKEGLFYFDSSFRPCPLS 704
>UNIPROTKB|B4E0P5 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001650
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0030529 GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC021188 UniGene:Hs.246112
HGNC:HGNC:30859 ChiTaRS:SNRNP200 EMBL:AK303465 IPI:IPI00927472
SMR:B4E0P5 STRING:B4E0P5 Ensembl:ENST00000429650
HOGENOM:HOG000031250 HOVERGEN:HBG078981 Uniprot:B4E0P5
Length = 595
Score = 402 (146.6 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 135/523 (25%), Positives = 232/523 (44%)
Query: 10 SSSLASVR----FLAVSATI-----PNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD 60
SSSL++ + +L SAT PN+ + L + +QG + R + + V+
Sbjct: 18 SSSLSNAKDVAHWLGCSATSTFNFHPNVRPVP--LELHIQGFNISHTQTRLLSMAKPVYH 75
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSD 120
+ ++S K +VF +RK + A + T F+ E+ L SD
Sbjct: 76 AITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKD--LIPYLEKLSD 133
Query: 121 KQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKST 180
++ +L GVGY + GL +R L+E LF G +QV+ + +L G+N+ AH V+I T
Sbjct: 134 STLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT 193
Query: 181 QYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVES 240
QY+N + Y+++ +LQM G A RP +D G +IM + ++ L VES
Sbjct: 194 QYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVES 253
Query: 241 QLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHM 300
L C+ +H AEIV T+ + A++++ ++LY RM +NP Y+++ IS + H+
Sbjct: 254 HLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHLSDHL 312
Query: 301 QEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLED 359
E+ Q + +L + I + ED + P G + YY+ + T++ + M +
Sbjct: 313 SELVEQTLSDLEQSKCI-SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRG 371
Query: 360 ALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRF-HINGDKGKRKKRIQTREEKIFV 418
+ + +A E I +R +E LL + +L N K +Q ++ +
Sbjct: 372 LIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQL 431
Query: 419 LANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQ 478
A L D I + R+ + D A+ + LA+ + Q
Sbjct: 432 SAE-------------LQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQ 478
Query: 479 RLWDDSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRR 520
+W YL KQLP K G++S F+ + D R
Sbjct: 479 AMWSKDSYL-KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEER 520
Score = 71 (30.1 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+R +A+S+++ N +D+A WL F +RPV L
Sbjct: 12 IRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPL 50
>ASPGD|ASPL0000030426 [details] [associations]
symbol:AN5514 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
Uniprot:Q5B1R6
Length = 1385
Score = 428 (155.7 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 105/365 (28%), Positives = 188/365 (51%)
Query: 188 GLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVT 247
G E+ ++QM GRAGRP F+D+ T +I+TR+E V YE L++G E VES L +
Sbjct: 567 GCGQEYSDLEVMQMLGRAGRPQFDDSATAVILTRKERVSHYERLVSGSESVESSLHLNLI 626
Query: 248 EHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQK 307
EHL AEI + A W+ ++L VR+++NP +Y +++ +R+ + ++ +C +
Sbjct: 627 EHLNAEIGLGNIKSTESAASWLAGTFLSVRLRRNPTHYRLKEGANRNDTNEMLRHICEKD 686
Query: 308 VDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHA 367
+ L + ++ T+ LK G M++Y ++++TMK +++ + L +C A
Sbjct: 687 IKLLQEYALVDTES----LKSTPFGYAMSRYSIRYETMKTLIKMKPKSDIAQILAIICQA 742
Query: 368 EEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGD 427
EE I+ + EK L IN KD +RF I D +I + A + G+
Sbjct: 743 EEFRDIRFKAGEKLLYKEINRSKD--IRFPIEVDIVLPAHKISLLIQSELG-AVEFPSGE 799
Query: 428 P-SVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPY 486
H + Q+ +++ + +R+ +C+ D K+ N+ LA+SL R+WD SP+
Sbjct: 800 QFQKHRFTFQQEKSTVFAHVNRVIRCIIDCQAHLKDSVTLCNALGLARSLAARVWDHSPF 859
Query: 487 LLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPP-K 545
+KQ+ + + L + GI S L ++ P I+I + FG +++ L + P +
Sbjct: 860 QMKQIEKLNATAVRKLVAHGIDSIVALEKSKPHLIDIALSKNQAFGTRLQKHLANFPKLR 919
Query: 546 VDMKI 550
V +K+
Sbjct: 920 VSVKM 924
Score = 399 (145.5 bits), Expect = 4.7e-33, P = 4.7e-33
Identities = 121/408 (29%), Positives = 194/408 (47%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWL--NVPVQGI----KRFGEEMRPVKLTTKVFDI 61
MKS ++VRF+A+SATIPN EDIA WL N Q + + FGEE RPVKL V+
Sbjct: 399 MKSIG-SNVRFVALSATIPNSEDIATWLGRNATSQHVPAHREHFGEEFRPVKLQKFVYGY 457
Query: 62 LMQYSRGKSALVFCSTRKGAQEAAQQL----SQTAMTYGYSNPFIKDREQQERL-R---- 112
+ + S G A + + S T + + RL R
Sbjct: 458 HFSGNNFAFDKLLNSNIIGTHSAKKPIMIFCSTRNSTVSTAKELARLWSMSSRLVRMWKG 517
Query: 113 -EASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLP 171
L ++ GV +H+ GL +DR+L+E +L+G + V+C
Sbjct: 518 PNKPLPVKHADLKVTTAAGVAFHHAGLETEDRHLVENGYLQGKISVIC------------ 565
Query: 172 AHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENL 231
Y G E+ ++QM GRAGRP F+D+ T +I+TR+E V YE L
Sbjct: 566 ----------Y-----GCGQEYSDLEVMQMLGRAGRPQFDDSATAVILTRKERVSHYERL 610
Query: 232 LNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVI 291
++G E VES L + EHL AEI + A W+ ++L VR+++NP +Y +++
Sbjct: 611 VSGSESVESSLHLNLIEHLNAEIGLGNIKSTESAASWLAGTFLSVRLRRNPTHYRLKEGA 670
Query: 292 SRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQT 351
+R+ + ++ +C + + L + ++ T+ LK G M++Y ++++TMK +++
Sbjct: 671 NRNDTNEMLRHICEKDIKLLQEYALVDTES----LKSTPFGYAMSRYSIRYETMKTLIKM 726
Query: 352 PVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHIN 399
+ L +C AEE I+ + EK L IN KD R ++
Sbjct: 727 KPKSDIAQILAIICQAEEFRDIRFKAGEKLLYKEINRSKDIRFPIEVD 774
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 423 (154.0 bits), Expect = 4.1e-34, Sum P(2) = 4.1e-34
Identities = 137/505 (27%), Positives = 247/505 (48%)
Query: 9 KSSSLAS-VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSR 67
KS + S +R + +SAT+PN D+A+++ +G+ F RP L + Q +
Sbjct: 529 KSETTGSDIRIVGLSATLPNYADVAKFIRAKPEGLFYFDASYRPCPLEQVYIGVKEQKAI 588
Query: 68 GKSALV--FCSTR--KGAQEAAQQL------SQTAMTYGY-----SNPFIKDREQQERLR 112
+ A + C R + Q+ Q + +T T Y ++ +E L+
Sbjct: 589 KRIAAMNEACYDRMHQSLQDRHQLIIFVHSRKETFTTAKYLMEKLDIDIVEQEGVKEILK 648
Query: 113 EASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPA 172
+ S S+ +++ I G G H+ GL KDR ++E LF +G ++VL +T TLA G+NLPA
Sbjct: 649 QEGESMSNPKLKEVIPRGFGIHHAGLTKKDRGVVEDLFAQGYLRVLVSTATLAWGVNLPA 708
Query: 173 HTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLL 232
HTV+IK T+ ++ E G +++ ILQM GRAGRP ++ G II+T ++ V Y +L
Sbjct: 709 HTVIIKGTETYSPESGAWVQLSPQDILQMLGRAGRPRYDKNGEGIIITSQDEVQYYLAIL 768
Query: 233 NGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKV-- 290
N +ESQL+ + +++ AEIV +++ I + IEW+ +Y +VRM ++P Y V
Sbjct: 769 NQQLPIESQLIHKLVDNINAEIVAGSITTIEEGIEWLTYTYFFVRMLQSPALYGVEATYD 828
Query: 291 ISRD------RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDT 344
+ D R + C+ ++L +++ G + E G++ + +Y+ F+T
Sbjct: 829 FTNDPTLYNRRADLIYTAFCILHENKL----VVYNAALGSVAST-ELGKIASHFYINFET 883
Query: 345 MKYI--MQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDK 402
+ M P + D L ++ E ++ +R+ E+ L + + + +
Sbjct: 884 INLYGKMLKPWHSET-DILSVFSNSGEFKYVPVRQEER--LEISKLMEKCPIPI------ 934
Query: 403 GKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKN 462
K++ KI +L I S+ +L DM I+ + R+ + + + + +K
Sbjct: 935 ---KEQPNEPLAKINILLQT-FISRLSLEGYALIADMIYITQSAGRLLRALYEIALLQK- 989
Query: 463 YKGAVNSAL-LAKSLYQRLW-DDSP 485
+ S L L K + +RLW ++SP
Sbjct: 990 WSSLAKSILNLCKMVDKRLWLNNSP 1014
Score = 262 (97.3 bits), Expect = 4.1e-18, P = 4.1e-18
Identities = 136/659 (20%), Positives = 273/659 (41%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRP-----VKL-------TTKVFDILM 63
+R +A+S+ + N DIAEW+ V F R +KL T K++ L
Sbjct: 1361 LRIVALSSPVLNSRDIAEWIGVAKSETFNFAPHSRENRITEIKLSVESSDNTVKIYKDLA 1420
Query: 64 QYSRG-KSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQ 122
+ + G ++ L+F + A E A + + + + + +L + +
Sbjct: 1421 KVNSGLRNTLIFAPSYIHAFEMAHSMVENNQAQEWRSVDLL------KLEKYISKIQNPL 1474
Query: 123 MQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL-CTTNTLAHGINLPAHTVVIKSTQ 181
+++ + G+ G+ DR ++E LF + VL CT +T A+ V + T+
Sbjct: 1475 LKNLLPKGIAVFYSGMARVDRLIVERLFESKSIGVLFCTMDTSKFAPT--ANNVFVAGTR 1532
Query: 182 YFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQ 241
++ + ++++ + + +M G D G V I T + V Y + LN VES
Sbjct: 1533 VYDGHEHRFLDYPLNDLYEMVGCC-----QDGGVVHIYTTSQMVEFYSSFLNSGLAVESL 1587
Query: 242 LLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQ 301
L + + E + + I+ + ++ Y R+ KNP Y +++V S I ++
Sbjct: 1588 LSNSLHEFFMDAVANGIIKQRQNCIDVLTFTFFYRRLLKNPSFYDLKEV-SNSGISTYLS 1646
Query: 302 EVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDAL 361
E+ D+ + + I +++G + P + + Y F+T+ + + L+D
Sbjct: 1647 ELIESVFDDFNKEEFIEEEDEGDTISPLNKIVIASHYNSTFETVSNLSKLSNKSKLKDIF 1706
Query: 362 HTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLAN 421
H + +A E + + +R E LL I +L + D ++ K F+L
Sbjct: 1707 HALTNATEFSDLPVREGEDALL----IKLQTKLPIKYSQDD------YESPFFKAFILLQ 1756
Query: 422 DCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-LAKSLYQRL 480
I S+ L QD S+ T +I D I + V A+ L++ + Q +
Sbjct: 1757 -AHISRISI-PFDLRQDQKSVLTRVLQILNAAID--ILSSDGSLNVLLAMDLSQMIVQAV 1812
Query: 481 WD-DSPYLLKQLPGI-GMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKES 538
W D+P L+Q+P + A+ ++ ++ D R EI+ N + S
Sbjct: 1813 WSSDNP--LRQVPRFTNEILARCTQHNVETVYDIMSLEDEERNEILQLPDQEL-NEVA-S 1868
Query: 539 LLSLPPKVDMKIEEIKCQGQGKSKLL-ITLTRLSQSVQS-----------TKRHYADMIV 586
++ P +++ E +SK + +T+ R + ++S TK+ ++V
Sbjct: 1869 FVNSYPNIELSYEMKGGVTSNESKFVTVTIDR-DEEIESLEVVKNENFPVTKQENWWIVV 1927
Query: 587 GAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVL 645
G + + +K+ + + S + + N + +LT+ LI + Y+ D + V+
Sbjct: 1928 GDSKTRHLYGIKKVNIQKISQSFEIEFTIPNKGKHELTIY--LICDSYLDADKEMEFVI 1984
Score = 44 (20.5 bits), Expect = 4.1e-34, Sum P(2) = 4.1e-34
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 776 LHDELD-VPEETEGSIFPRATLLNPSSGST 804
L + +D VP ET G +FP T N ST
Sbjct: 1186 LDNNVDLVPTETVGDLFP-FTHFNKLQSST 1214
>ASPGD|ASPL0000044033 [details] [associations]
symbol:AN2482 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
Uniprot:Q5BAE8
Length = 2015
Score = 425 (154.7 bits), Expect = 5.4e-34, Sum P(2) = 5.4e-34
Identities = 139/521 (26%), Positives = 243/521 (46%)
Query: 1 MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLT---- 55
++A S+ + +R + +SAT+PN D+A++L V + G+ F RPV L
Sbjct: 446 LVARTQRQVESTQSLIRIVGLSATLPNYVDVADFLKVNKMAGLFFFDSSFRPVPLEQHFI 505
Query: 56 ----------------TKVFD-ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYS 98
T F+ + RG +VF +RK A+ L Q A+ G
Sbjct: 506 GVKGKPGSKQSRDNIDTVTFEKVRDMLERGHQVMVFVHSRKDTVLTARMLKQMAVQDGCE 565
Query: 99 NPF-IKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQV 157
F + E ++++ G G H+ G+ DRNL+E
Sbjct: 566 ALFSCHEHENYSNALRDMKHARARELRDLFASGFGTHHAGMSRSDRNLMEP--------- 616
Query: 158 LCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI 217
TLA G+NLPA VVIK TQ +N ++G +++ +LQ+ GRAGRP F DTG
Sbjct: 617 -----TLAWGVNLPAAAVVIKGTQLYNPQEGKFVDLGILDVLQIFGRAGRPQFQDTGIGF 671
Query: 218 IMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVR 277
I T + ++ Y + + + +ES+ S + ++L AEI TV+ I++ ++W+ SYL+VR
Sbjct: 672 ICTTHDKLNHYLSAVTSQQPIESRFSSRLVDNLNAEIALGTVTSISEGVQWLGYSYLFVR 731
Query: 278 MKKNPQNYSV--RKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLM 335
MK+ P+NY + ++I + +++ +Q L QMI +E L+ ++ GR+
Sbjct: 732 MKREPRNYGIDYTELIDDPGLVLRRRQLIIQAALVLQKSQMIIYNEKTEELRAKDVGRIA 791
Query: 336 TKYYLKFDTMKYI--MQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGR 393
++YY+ +++ + P G D L + + E IQ R NE K L + ++
Sbjct: 792 SQYYVLQTSIEIFNELMRP-RSGEADVLRMISMSGEFDNIQSRENESKELTRL---REEA 847
Query: 394 LRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCM 453
++ + G G + +T +L I + D +L D ++ N +RI + +
Sbjct: 848 VQTEVEG--GNDSAQAKTN-----ILLQS-YISRAKIEDFALVSDTGYVAQNAARICRAL 899
Query: 454 RDYFIFRK-NYKGAVNSALLAKSLYQRLWD-DSPYLLKQLP 492
+ R+ Y+ V ++ KS+ +++W D P+ LP
Sbjct: 900 FMIALNRRWGYQCQVLLSM-CKSIEKQMWPFDHPFRQFDLP 939
Score = 384 (140.2 bits), Expect = 7.3e-34, Sum P(2) = 7.3e-34
Identities = 103/336 (30%), Positives = 167/336 (49%)
Query: 59 FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSC 118
F + +S K +VF ++R+ + A+ L F++ E +L +
Sbjct: 1352 FLAIKNHSPEKPVIVFVASRRQTRLTAKDLINFCGMEDNPRRFVRMSEDDLQLNLERVK- 1410
Query: 119 SDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIK 178
D ++ + +G+G H+ GL DR L E LF +Q+L T+TLA G+NLPAH VV+K
Sbjct: 1411 -DDALREALSFGIGLHHAGLVESDRQLAEELFANNKIQILVATSTLAWGVNLPAHLVVVK 1469
Query: 179 STQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMV 238
TQ+F+ + Y + D + +LQM GRAGRP F+ +G I T+ Y++ L+ V
Sbjct: 1470 GTQFFDAKTEGYKDMDLTDVLQMLGRAGRPQFDSSGIARIFTQDSKKAFYKHFLHTGFPV 1529
Query: 239 ESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDR--- 295
ES L + HL AE+ T++ A++++ ++ + R+ KNP Y + IS D+
Sbjct: 1530 ESTLHKVLDNHLGAEVSAGTIATKQDALDYLTWTFFFRRLHKNPSYYGLE--ISADQHNS 1587
Query: 296 IEKHM--QEVCVQKVD----ELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIM 349
+E Q+ + VD ELS I D + P G++M+ YYL T++Y++
Sbjct: 1588 LEAQTLAQDFMIDLVDKSLSELSESSCIIFDSATGEVDPTPFGKIMSYYYLAHKTIRYLL 1647
Query: 350 QTPVNC-GLEDALHTVCHAEEIAWIQLRRNEKKLLN 384
D L +C A E + +R NE L+N
Sbjct: 1648 SHAKPAPSFHDVLSWMCSATEFDELPVRHNED-LIN 1682
Score = 82 (33.9 bits), Expect = 7.3e-34, Sum P(2) = 7.3e-34
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 10 SSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
S S SVR + +S N D+A WL V +G+ F +RPV L
Sbjct: 1284 SQSKGSVRLMGMSTACANASDLANWLGVK-EGLYNFRHSVRPVPL 1327
Score = 41 (19.5 bits), Expect = 5.4e-34, Sum P(2) = 5.4e-34
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 574 VQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKAD 628
V+ST D +GAE + + ++ +D + + L NP L + AD
Sbjct: 1529 VESTLHKVLDNHLGAEVSAGTIATKQDALDYLTWTFFFRRLHKNPSYYGLEISAD 1583
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 397 (144.8 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 92/325 (28%), Positives = 163/325 (50%)
Query: 60 DILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCS 119
+I+ + K ++F +R + + L A+ F+ + +++ +
Sbjct: 685 EIINSLKKDKQCIIFVCSRNETNKTIEFLINHALKNNEIEYFVNNVYTDNDIKKKIKKSN 744
Query: 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKS 179
+ ++ + YG H+ G+ D+ L+E LF K VLC T+TLA G+NLP HTV+IK
Sbjct: 745 NLYIKQFYEYGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKG 804
Query: 180 TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVE 239
T YF+ E G + D I Q+ GR GRP + G I++T R ++ Y LL ++E
Sbjct: 805 TNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTVIE 864
Query: 240 SQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRD-RIEK 298
S L + HL AEI T+ +I I+W++ +YL++RMKKNP Y V I+ D +
Sbjct: 865 SNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDVD--INNDLNLYN 922
Query: 299 HMQEVCVQKVDELSCHQMIWTD--EDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCG 356
+++ ++ + LS ++++ + F+ G++ KYY+ + T+ + N
Sbjct: 923 KRKDIIMKAIQNLSENKLVRRVLLTNDFI--GTFYGQIAAKYYVDYKTIGMFAENVQNNN 980
Query: 357 LEDALHTVCHAEEIAWIQLRRNEKK 381
+ + + A+E IQ+R + K
Sbjct: 981 YIEIIQVISKAKEFENIQIRNEDMK 1005
Score = 294 (108.6 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 68/251 (27%), Positives = 131/251 (52%)
Query: 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKS 179
++ ++ + YG+G H+ GL D+ ++E LFL +Q+L T+TLA GINLPA+ V+IK
Sbjct: 1804 NEHLKEILKYGIGIHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIKG 1863
Query: 180 TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVE 239
++++ + Y + + +LQM GRAGRP F+D I++ + + + +N L +E
Sbjct: 1864 NEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNAIKNFLYHPMNIE 1923
Query: 240 SQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNY--SVRKV--ISRDR 295
S ++ EH+ AEI +++ ++ SY + R+ NP Y V+ V +
Sbjct: 1924 SNIMENFNEHINAEICSNVINNKEDIFNYLTKSYYFKRLFSNPSYYIKEVQYVQFFENSK 1983
Query: 296 IEKHMQEVCVQKVDE--------LSCHQMIWTDEDGFLLKPQE-P-GRLMTKYYLKFDTM 345
+ H +++ +++ L ++ + ++ ++L P G + + YY+K +T+
Sbjct: 1984 LSTHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENYVLNYYATPLGHIASMYYIKCETV 2043
Query: 346 KYIMQTPVNCG 356
Y T + G
Sbjct: 2044 -YFFYTSIQAG 2053
Score = 74 (31.1 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 17 RFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDI 61
R +A+SAT+PN +D+ ++L V F E+ R ++L ++ I
Sbjct: 622 RIMAMSATLPNYKDVRDFLKVENDMCYYFNEKYRSIQLDKTLYGI 666
Score = 59 (25.8 bits), Expect = 9.0e-21, Sum P(4) = 9.0e-21
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 54 LTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQL 88
+ VFD + QY++ K+ L+F S+R+ + A +
Sbjct: 1586 MNKNVFDAINQYAQTKNVLIFVSSRRQTRLTAYDI 1620
Score = 56 (24.8 bits), Expect = 9.1e-21, Sum P(3) = 9.1e-21
Identities = 18/85 (21%), Positives = 35/85 (41%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQ-YS 66
M++ +R + ++ I +++D+ WL+V + F R V T + + Y
Sbjct: 1521 MQNELNKKIRLIGLTTVITSVDDLILWLDVKENYLFNFPSSCRIVPCKTHILGFTQKAYC 1580
Query: 67 RGKSALVFCSTRKGAQEAAQQLSQT 91
S + K +A Q +QT
Sbjct: 1581 NRMSVM-----NKNVFDAINQYAQT 1600
Score = 48 (22.0 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 348 IMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKK 407
+ + P+NCG+ C+ E+ L +N+K +L +KD + ++ +K
Sbjct: 1090 LRRLPINCGI---FRHFCYKNEM----LEKNKKAILT----NKDRLKNIKKDNEESDKKN 1138
Query: 408 RIQTREEKIFVL 419
I R + ++
Sbjct: 1139 NISDRNVGVHLI 1150
Score = 47 (21.6 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 21/55 (38%), Positives = 24/55 (43%)
Query: 343 DTMKYIMQTPVNCGLE--DALHTVCHAEEIAWIQLRRNEKK----LLNVINIDKD 391
D M+ T N LE D V A+E I LR NE K L N I +D D
Sbjct: 2133 DNMQTDFCTLKNDSLEFYDIFELVVQAKEFDDIPLRHNEDKYNVKLRNQIPLDID 2187
Score = 45 (20.9 bits), Expect = 1.3e-29, Sum P(5) = 1.3e-29
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 25 IPNIEDIAEWLNVPVQGIKRFGEEMRPVKLT 55
IPN +D E ++VP I + + + VK++
Sbjct: 279 IPNDQDKLEEIHVPKNTIYSYTDNITKVKIS 309
Score = 44 (20.5 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 835 FSLPKFFMFEDTVPSQYEECTSKTLTKSTIFEHIRKKSKN 874
FS P +++ E +E T K I++H+ +N
Sbjct: 1963 FSNPSYYIKEVQYVQFFENSKLSTHAKKIIYDHLNDVIEN 2002
Score = 40 (19.1 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 24 TIPNIEDIAEWL 35
TI NIED +WL
Sbjct: 883 TIKNIEDGIKWL 894
Score = 38 (18.4 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 409 IQTREEKIFVLANDCLIGDPSVHDLSLTQDM--NSISTNGSRIAKCMRDY 456
+ +E +F + C I H L TQ N +S + + Y
Sbjct: 1548 LDVKENYLFNFPSSCRIVPCKTHILGFTQKAYCNRMSVMNKNVFDAINQY 1597
Score = 37 (18.1 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 17/72 (23%), Positives = 27/72 (37%)
Query: 533 NHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENN 592
NHI + LL+ K K +G + + + + + D I A NN
Sbjct: 1643 NHI-DFLLNTQKKNKKNKINNKDMNEGDNNIAENINTFEYTEYKMNINRKDNI--ASYNN 1699
Query: 593 MVLFHEKIRVDE 604
M +H+ DE
Sbjct: 1700 MSYYHKSSVTDE 1711
Score = 37 (18.1 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 94 TYG-YSNPFIKDREQQERLREASLSCSDKQMQSY 126
TY YSN +++ L+EA+++ +K+ +Y
Sbjct: 1161 TYNNYSNNNRRNQNYTVYLKEAAVNILEKKNLTY 1194
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 397 (144.8 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 92/325 (28%), Positives = 163/325 (50%)
Query: 60 DILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCS 119
+I+ + K ++F +R + + L A+ F+ + +++ +
Sbjct: 685 EIINSLKKDKQCIIFVCSRNETNKTIEFLINHALKNNEIEYFVNNVYTDNDIKKKIKKSN 744
Query: 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKS 179
+ ++ + YG H+ G+ D+ L+E LF K VLC T+TLA G+NLP HTV+IK
Sbjct: 745 NLYIKQFYEYGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKG 804
Query: 180 TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVE 239
T YF+ E G + D I Q+ GR GRP + G I++T R ++ Y LL ++E
Sbjct: 805 TNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTVIE 864
Query: 240 SQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRD-RIEK 298
S L + HL AEI T+ +I I+W++ +YL++RMKKNP Y V I+ D +
Sbjct: 865 SNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDVD--INNDLNLYN 922
Query: 299 HMQEVCVQKVDELSCHQMIWTD--EDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCG 356
+++ ++ + LS ++++ + F+ G++ KYY+ + T+ + N
Sbjct: 923 KRKDIIMKAIQNLSENKLVRRVLLTNDFI--GTFYGQIAAKYYVDYKTIGMFAENVQNNN 980
Query: 357 LEDALHTVCHAEEIAWIQLRRNEKK 381
+ + + A+E IQ+R + K
Sbjct: 981 YIEIIQVISKAKEFENIQIRNEDMK 1005
Score = 294 (108.6 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 68/251 (27%), Positives = 131/251 (52%)
Query: 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKS 179
++ ++ + YG+G H+ GL D+ ++E LFL +Q+L T+TLA GINLPA+ V+IK
Sbjct: 1804 NEHLKEILKYGIGIHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIKG 1863
Query: 180 TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVE 239
++++ + Y + + +LQM GRAGRP F+D I++ + + + +N L +E
Sbjct: 1864 NEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNAIKNFLYHPMNIE 1923
Query: 240 SQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNY--SVRKV--ISRDR 295
S ++ EH+ AEI +++ ++ SY + R+ NP Y V+ V +
Sbjct: 1924 SNIMENFNEHINAEICSNVINNKEDIFNYLTKSYYFKRLFSNPSYYIKEVQYVQFFENSK 1983
Query: 296 IEKHMQEVCVQKVDE--------LSCHQMIWTDEDGFLLKPQE-P-GRLMTKYYLKFDTM 345
+ H +++ +++ L ++ + ++ ++L P G + + YY+K +T+
Sbjct: 1984 LSTHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENYVLNYYATPLGHIASMYYIKCETV 2043
Query: 346 KYIMQTPVNCG 356
Y T + G
Sbjct: 2044 -YFFYTSIQAG 2053
Score = 74 (31.1 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 17 RFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDI 61
R +A+SAT+PN +D+ ++L V F E+ R ++L ++ I
Sbjct: 622 RIMAMSATLPNYKDVRDFLKVENDMCYYFNEKYRSIQLDKTLYGI 666
Score = 59 (25.8 bits), Expect = 9.0e-21, Sum P(4) = 9.0e-21
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 54 LTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQL 88
+ VFD + QY++ K+ L+F S+R+ + A +
Sbjct: 1586 MNKNVFDAINQYAQTKNVLIFVSSRRQTRLTAYDI 1620
Score = 56 (24.8 bits), Expect = 9.1e-21, Sum P(3) = 9.1e-21
Identities = 18/85 (21%), Positives = 35/85 (41%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQ-YS 66
M++ +R + ++ I +++D+ WL+V + F R V T + + Y
Sbjct: 1521 MQNELNKKIRLIGLTTVITSVDDLILWLDVKENYLFNFPSSCRIVPCKTHILGFTQKAYC 1580
Query: 67 RGKSALVFCSTRKGAQEAAQQLSQT 91
S + K +A Q +QT
Sbjct: 1581 NRMSVM-----NKNVFDAINQYAQT 1600
Score = 48 (22.0 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 348 IMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKK 407
+ + P+NCG+ C+ E+ L +N+K +L +KD + ++ +K
Sbjct: 1090 LRRLPINCGI---FRHFCYKNEM----LEKNKKAILT----NKDRLKNIKKDNEESDKKN 1138
Query: 408 RIQTREEKIFVL 419
I R + ++
Sbjct: 1139 NISDRNVGVHLI 1150
Score = 47 (21.6 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 21/55 (38%), Positives = 24/55 (43%)
Query: 343 DTMKYIMQTPVNCGLE--DALHTVCHAEEIAWIQLRRNEKK----LLNVINIDKD 391
D M+ T N LE D V A+E I LR NE K L N I +D D
Sbjct: 2133 DNMQTDFCTLKNDSLEFYDIFELVVQAKEFDDIPLRHNEDKYNVKLRNQIPLDID 2187
Score = 45 (20.9 bits), Expect = 1.3e-29, Sum P(5) = 1.3e-29
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 25 IPNIEDIAEWLNVPVQGIKRFGEEMRPVKLT 55
IPN +D E ++VP I + + + VK++
Sbjct: 279 IPNDQDKLEEIHVPKNTIYSYTDNITKVKIS 309
Score = 44 (20.5 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 835 FSLPKFFMFEDTVPSQYEECTSKTLTKSTIFEHIRKKSKN 874
FS P +++ E +E T K I++H+ +N
Sbjct: 1963 FSNPSYYIKEVQYVQFFENSKLSTHAKKIIYDHLNDVIEN 2002
Score = 40 (19.1 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 24 TIPNIEDIAEWL 35
TI NIED +WL
Sbjct: 883 TIKNIEDGIKWL 894
Score = 38 (18.4 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 409 IQTREEKIFVLANDCLIGDPSVHDLSLTQDM--NSISTNGSRIAKCMRDY 456
+ +E +F + C I H L TQ N +S + + Y
Sbjct: 1548 LDVKENYLFNFPSSCRIVPCKTHILGFTQKAYCNRMSVMNKNVFDAINQY 1597
Score = 37 (18.1 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 17/72 (23%), Positives = 27/72 (37%)
Query: 533 NHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENN 592
NHI + LL+ K K +G + + + + + D I A NN
Sbjct: 1643 NHI-DFLLNTQKKNKKNKINNKDMNEGDNNIAENINTFEYTEYKMNINRKDNI--ASYNN 1699
Query: 593 MVLFHEKIRVDE 604
M +H+ DE
Sbjct: 1700 MSYYHKSSVTDE 1711
Score = 37 (18.1 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 94 TYG-YSNPFIKDREQQERLREASLSCSDKQMQSY 126
TY YSN +++ L+EA+++ +K+ +Y
Sbjct: 1161 TYNNYSNNNRRNQNYTVYLKEAAVNILEKKNLTY 1194
>UNIPROTKB|F1SU36 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GeneTree:ENSGT00640000091272 EMBL:CU896688
Ensembl:ENSSSCT00000008906 OMA:QSSKKEF Uniprot:F1SU36
Length = 553
Score = 368 (134.6 bits), Expect = 6.3e-31, P = 6.3e-31
Identities = 109/404 (26%), Positives = 185/404 (45%)
Query: 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKS 179
D ++ +L GVGY + GL +R L+E LF G +QV+ + +L G+N+ AH V+I
Sbjct: 23 DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD 82
Query: 180 TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVE 239
TQY+N + Y+++ +LQM GRA RP +D G +IM + ++ L VE
Sbjct: 83 TQYYNGKIHAYVDYPIYDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVE 142
Query: 240 SQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKH 299
S L C+ +H AEIV T+ + A++++ ++LY RM +NP Y+++ IS + H
Sbjct: 143 SHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHLSDH 201
Query: 300 MQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNCGLE 358
+ E+ Q + +L + I + ED + P G + YY+ + T++ + M +
Sbjct: 202 LSELVEQTLSDLEQSKCI-SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVR 260
Query: 359 DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRF-HINGDKGKRKKRIQTREEKIF 417
+ + +A E I +R +E LL + +L N K +Q ++
Sbjct: 261 GLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQ 320
Query: 418 VLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLY 477
+ A L D I + R+ + D A+ + LA+ +
Sbjct: 321 LSAE-------------LQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVT 367
Query: 478 QRLWDDSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRR 520
Q +W YL KQLP K G++S F+ + D R
Sbjct: 368 QAMWSKDSYL-KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEER 410
>UNIPROTKB|H9L351 [details] [associations]
symbol:H9L351 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00640000091272 EMBL:AADN02064073
EMBL:AADN02064074 Ensembl:ENSGALT00000021750
Ensembl:ENSGALT00000036125 Uniprot:H9L351
Length = 254
Score = 351 (128.6 bits), Expect = 7.7e-31, P = 7.7e-31
Identities = 80/234 (34%), Positives = 129/234 (55%)
Query: 109 ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
E LR + C + +++ + YG H+ G+ DR L+E LF +QVL +T TLA G+
Sbjct: 20 EVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGV 79
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228
NLPAHTV+IK TQ ++ EKG + E ILQM GRAGRP ++ G I++T + Y
Sbjct: 80 NLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 139
Query: 229 ENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV- 287
+LLN +ESQ++S + + L AE V V + A+ W+ +YLY+RM ++P Y +
Sbjct: 140 LSLLNQQLPIESQMVSKLPDMLNAETVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGIS 199
Query: 288 RKVISRDRI-EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYL 340
+ D + ++ ++ L + ++ D+ + E GR+ + YY+
Sbjct: 200 HDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYI 253
>UNIPROTKB|F1SU44 [details] [associations]
symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
Length = 1027
Score = 328 (120.5 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 94/314 (29%), Positives = 155/314 (49%)
Query: 40 QGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSN 99
+ IKRF + M + V++ +M+++ LVF +RK + A+ + +
Sbjct: 696 KAIKRF-QIMNEI-----VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLG 749
Query: 100 PFIKDREQQ-ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL 158
F+++ E LR + C + +++ + YG H+ G+ DR L+E LF +QVL
Sbjct: 750 LFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVL 809
Query: 159 CTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVII 218
+T TLA G+NLPAHTV+IK TQ ++ EKG + E ILQM GRAGRP ++ G I+
Sbjct: 810 VSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 869
Query: 219 MTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEW----MKCSYL 274
+T + Y +LLN +ESQ+++ + + L AEIV V + + + + C L
Sbjct: 870 ITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNAEIVLGNVQNAKRGLGSGSVVILCVVL 929
Query: 275 YVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDE--DGFLLKPQEPG 332
+ P + I R + C L+C ++ T E + E G
Sbjct: 930 WATSTWGPPTLGLTSPILMCRCFLDLSITC------LNC-LLLGTVEIYHAISVHVTELG 982
Query: 333 RLMTKYYLKFDTMK 346
R+ + YY+ DT++
Sbjct: 983 RIASHYYITNDTVQ 996
Score = 91 (37.1 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 16 VRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
VR + +SAT+PN ED+A +L V P +G+ F RPV L
Sbjct: 646 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPL 685
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 351 (128.6 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 84/237 (35%), Positives = 132/237 (55%)
Query: 68 GKSA-LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE-QQERLREASLSCSDKQMQS 125
GK+ L+F +RK ++ L M + F+ D++ E L +++++
Sbjct: 1038 GKNQILIFVHSRKETYRTSKLLIDRFMKSDNLSKFLIDKKISSEILLSEKEHVINEELKE 1097
Query: 126 YILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNK 185
+ +G G H+ GL DR L+E LF +QVL T+TLA GINLPAHTV+IK T +N
Sbjct: 1098 ILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVIIKGTSVYNI 1157
Query: 186 EKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSC 245
G + E +LQM GR+GRP ++ +G II+T + + LY +L N +ES LL
Sbjct: 1158 NIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQLYLSLNNEQLFIESTLLHN 1217
Query: 246 VTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQE 302
+ + AEIV + ++ A+ W++ +Y+Y+RM K P Y V + S D+I K ++E
Sbjct: 1218 IVNIINAEIVLKNIQNMDDAMNWLEHTYMYIRMLKCPSLYGVI-INSNDKI-KGIEE 1272
Score = 225 (84.3 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 65/236 (27%), Positives = 113/236 (47%)
Query: 119 SDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIK 178
+DK ++ ++ G+ Y + + ++ ++E LF K +Q+L + + +N+ A+ V+I
Sbjct: 2295 NDKMLRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQILIVSYDYIYSLNVYANNVIIL 2354
Query: 179 ST--QYFNKEKGLYMEHDRS--TILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNG 234
T +F+ K E D S IL+M AGR + V I T Y+N +
Sbjct: 2355 DTIITHFHNNK----EEDYSIQNILEMISYAGRQNEDTKAFVYIYTYITKKEYYKNFIYE 2410
Query: 235 CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRD 294
VES + + L EIV T+ + AI+W+ S+ Y R+KKNP Y + K IS +
Sbjct: 2411 PLTVESNIEDNLPNFLNNEIVMSTIENYQDAIDWLTWSFFYRRIKKNPNYYGL-KGISNE 2469
Query: 295 RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ 350
I ++ E+ ++ LS I +E +KP G + + Y L + + + Q
Sbjct: 2470 HISDYLSELIENNMEILSFANCINIEEQTMDIKPCNLGIISSFYNLDYHIIHFFNQ 2525
Score = 78 (32.5 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 31/123 (25%), Positives = 54/123 (43%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVF 74
+R + +SAT+PN ED+ +L ++ GI F RPV++ I + K AL+
Sbjct: 967 IRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHYIGIKEKKGIKKYALMN 1026
Query: 75 CSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQER-LREASLS--CSDKQMQSYILYGV 131
T + E A + + + + +R ++ +LS DK++ S IL
Sbjct: 1027 ELTYEKVLEEAGKNQILIFVHSRKETYRTSKLLIDRFMKSDNLSKFLIDKKISSEILLSE 1086
Query: 132 GYH 134
H
Sbjct: 1087 KEH 1089
Score = 46 (21.3 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 17 RFLAVSA-TIPNIEDIAEWLNVPVQGIKRFGEEMR--PVKLTTKVFDILMQYSR 67
R L +S+ ++ N +D AEW+ F +R P+++ +I+ + +R
Sbjct: 2023 RILCLSSCSLYNSKDFAEWIGCKKNDYYNFLSTVRDIPIEIYLHAVNIMNKQNR 2076
Score = 41 (19.5 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 38/200 (19%), Positives = 80/200 (40%)
Query: 284 NYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFD 343
NY K + ++I++ M + L + +I ++ + G++ + YY+ +
Sbjct: 1337 NYKYNKFM--EKIKRRMYNILYSCFLILEKYDLIKYNKKLNTVSSTYIGKISSYYYVDYK 1394
Query: 344 TMKYIMQTPVNCGLE--DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGD 401
++ I +N D L + E I +R EK L++I ++K L +
Sbjct: 1395 SID-IYNKKLNKYTNEIDLLKIFTMSNEFKNIFIRDEEKTELSII-MEK---LPIPV--- 1446
Query: 402 KGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRK 461
K+ I KI +L + + ++ + DM I N RI + + + +
Sbjct: 1447 ----KESINIPYTKINILLQ-LYLSNIILNGYIINADMVYIHQNALRIFRSFFEISLKKN 1501
Query: 462 NYKGAVNSALLAKSLYQRLW 481
+Y + K + +R+W
Sbjct: 1502 SYNLIKLTLKFCKMIERRMW 1521
Score = 37 (18.1 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 857 KTLTKSTIFEHI 868
KTL KS IFE I
Sbjct: 2531 KTLKKSRIFEII 2542
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 351 (128.6 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 84/237 (35%), Positives = 132/237 (55%)
Query: 68 GKSA-LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE-QQERLREASLSCSDKQMQS 125
GK+ L+F +RK ++ L M + F+ D++ E L +++++
Sbjct: 1038 GKNQILIFVHSRKETYRTSKLLIDRFMKSDNLSKFLIDKKISSEILLSEKEHVINEELKE 1097
Query: 126 YILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNK 185
+ +G G H+ GL DR L+E LF +QVL T+TLA GINLPAHTV+IK T +N
Sbjct: 1098 ILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVIIKGTSVYNI 1157
Query: 186 EKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSC 245
G + E +LQM GR+GRP ++ +G II+T + + LY +L N +ES LL
Sbjct: 1158 NIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQLYLSLNNEQLFIESTLLHN 1217
Query: 246 VTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQE 302
+ + AEIV + ++ A+ W++ +Y+Y+RM K P Y V + S D+I K ++E
Sbjct: 1218 IVNIINAEIVLKNIQNMDDAMNWLEHTYMYIRMLKCPSLYGVI-INSNDKI-KGIEE 1272
Score = 225 (84.3 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 65/236 (27%), Positives = 113/236 (47%)
Query: 119 SDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIK 178
+DK ++ ++ G+ Y + + ++ ++E LF K +Q+L + + +N+ A+ V+I
Sbjct: 2295 NDKMLRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQILIVSYDYIYSLNVYANNVIIL 2354
Query: 179 ST--QYFNKEKGLYMEHDRS--TILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNG 234
T +F+ K E D S IL+M AGR + V I T Y+N +
Sbjct: 2355 DTIITHFHNNK----EEDYSIQNILEMISYAGRQNEDTKAFVYIYTYITKKEYYKNFIYE 2410
Query: 235 CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRD 294
VES + + L EIV T+ + AI+W+ S+ Y R+KKNP Y + K IS +
Sbjct: 2411 PLTVESNIEDNLPNFLNNEIVMSTIENYQDAIDWLTWSFFYRRIKKNPNYYGL-KGISNE 2469
Query: 295 RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ 350
I ++ E+ ++ LS I +E +KP G + + Y L + + + Q
Sbjct: 2470 HISDYLSELIENNMEILSFANCINIEEQTMDIKPCNLGIISSFYNLDYHIIHFFNQ 2525
Score = 78 (32.5 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 31/123 (25%), Positives = 54/123 (43%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVF 74
+R + +SAT+PN ED+ +L ++ GI F RPV++ I + K AL+
Sbjct: 967 IRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHYIGIKEKKGIKKYALMN 1026
Query: 75 CSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQER-LREASLS--CSDKQMQSYILYGV 131
T + E A + + + + +R ++ +LS DK++ S IL
Sbjct: 1027 ELTYEKVLEEAGKNQILIFVHSRKETYRTSKLLIDRFMKSDNLSKFLIDKKISSEILLSE 1086
Query: 132 GYH 134
H
Sbjct: 1087 KEH 1089
Score = 46 (21.3 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 17 RFLAVSA-TIPNIEDIAEWLNVPVQGIKRFGEEMR--PVKLTTKVFDILMQYSR 67
R L +S+ ++ N +D AEW+ F +R P+++ +I+ + +R
Sbjct: 2023 RILCLSSCSLYNSKDFAEWIGCKKNDYYNFLSTVRDIPIEIYLHAVNIMNKQNR 2076
Score = 41 (19.5 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 38/200 (19%), Positives = 80/200 (40%)
Query: 284 NYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFD 343
NY K + ++I++ M + L + +I ++ + G++ + YY+ +
Sbjct: 1337 NYKYNKFM--EKIKRRMYNILYSCFLILEKYDLIKYNKKLNTVSSTYIGKISSYYYVDYK 1394
Query: 344 TMKYIMQTPVNCGLE--DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGD 401
++ I +N D L + E I +R EK L++I ++K L +
Sbjct: 1395 SID-IYNKKLNKYTNEIDLLKIFTMSNEFKNIFIRDEEKTELSII-MEK---LPIPV--- 1446
Query: 402 KGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRK 461
K+ I KI +L + + ++ + DM I N RI + + + +
Sbjct: 1447 ----KESINIPYTKINILLQ-LYLSNIILNGYIINADMVYIHQNALRIFRSFFEISLKKN 1501
Query: 462 NYKGAVNSALLAKSLYQRLW 481
+Y + K + +R+W
Sbjct: 1502 SYNLIKLTLKFCKMIERRMW 1521
Score = 37 (18.1 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 857 KTLTKSTIFEHI 868
KTL KS IFE I
Sbjct: 2531 KTLKKSRIFEII 2542
>UNIPROTKB|I3LAH4 [details] [associations]
symbol:I3LAH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00640000091272 EMBL:CU104757
Ensembl:ENSSSCT00000025204 OMA:FMKEGSA Uniprot:I3LAH4
Length = 197
Score = 176 (67.0 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 41/119 (34%), Positives = 60/119 (50%)
Query: 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCS- 119
+L Q G +VF R A L + A G + F+ + + E + S
Sbjct: 68 VLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNNGQISYFLPTQGPEYGHAEKQVQKSR 127
Query: 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIK 178
+KQ++ G H+ G+ +DRNL+E LF G ++VL T TLA G+NLPAH V+IK
Sbjct: 128 NKQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIK 186
Score = 78 (32.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 16 VRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL 54
+R L +SAT+PN D+A +L+V P G+ F RPV L
Sbjct: 2 IRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPL 41
>WB|WBGene00021905 [details] [associations]
symbol:helq-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
WormBase:Y55B1AL.3a Uniprot:H2KY86
Length = 923
Score = 219 (82.2 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 69/237 (29%), Positives = 113/237 (47%)
Query: 70 SALVFCSTRKGAQEAAQQLSQTAMTY-GYSNPFIKDREQQERLREASLSCSDKQMQSYIL 128
SA++FC +K + A +++T + + D Q L + D ++ IL
Sbjct: 405 SAVIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQCIL 464
Query: 129 YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
GV YH+ GL +R +E F++G + V+C T+TLA G+NLP V+IK+ + G
Sbjct: 465 SGVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVIIKAPMVGRERLG 524
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGT--VIIMTRRETVHLYENLLNGCEMVESQLLSCV 246
++ LQM GRAGR F+ G II E E L + S L S
Sbjct: 525 ------KAQYLQMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIPRCMSSLSS-- 576
Query: 247 TEHLTAEIVQMTVSDITQAIEWMKCSYLYVRM--KKNPQNYSVRKVI--SRDRIEKH 299
E + + I+ V + + IE + + Y +++P+N +RK++ S R+E+H
Sbjct: 577 EESMGSFILDCVVLKLAENIEEIMTAVRYSLFYAQESPEN--IRKLVESSVKRLEEH 631
Score = 68 (29.0 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 28/91 (30%), Positives = 45/91 (49%)
Query: 472 LAKSLYQRLWDDS-PYLLKQLPGIGMVTAKA--LHSMGIKSFETLAEADPRRI--EIVTG 526
L L QRL + + P LL + G+ A+A L G K+ +A A+P ++ E+ T
Sbjct: 824 LLPELVQRLSEAAQPELLPLMTVDGIKKARAAILFKAGYKTVGMIARANPLKLVQELGTI 883
Query: 527 RKYPFGNHIKESLLSLPPKVDMKIEEIKCQG 557
R + I + + L +VD K+EE+ G
Sbjct: 884 RMAQANSIIASARMVLRDQVDEKMEELDVWG 914
Score = 54 (24.1 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 17 RFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLT--TKVFDILMQYS 66
+ + +SAT+PNI+D+ L V + RPV+LT K+ + Q S
Sbjct: 323 QIVGMSATLPNIDDLKFALRAFV-----YSTNFRPVELTEFVKIGQTMHQVS 369
Score = 38 (18.4 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 276 VRMKKNPQNYSVRKVISRDRIEKHMQEVCV 305
+RM + + +++ RD++++ M+E+ V
Sbjct: 883 IRMAQANSIIASARMVLRDQVDEKMEELDV 912
>UNIPROTKB|D4A628 [details] [associations]
symbol:Polq "Polymerase (DNA directed), theta (Predicted),
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
Length = 2547
Score = 208 (78.3 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 74/256 (28%), Positives = 127/256 (49%)
Query: 70 SALVFCSTRKGAQEAAQQLSQTAMTYGYS-NPFIKDRE------QQERLREA------SL 116
S LVFC ++K ++ A +++ + +K E Q+ L E S
Sbjct: 340 SVLVFCPSKKWCEKVADIIAREFYNLHHQPEGLVKSSEFPPVILDQKSLLEVIDQLKRSP 399
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
S D +++ + +GV +H+ GL ++R++IEG F +G ++VL T+TL+ G+NLPA V+
Sbjct: 400 SGLDSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVI 459
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGC- 235
I+ T F + L D T QM GRAGR + G I++ + LL G
Sbjct: 460 IR-TPVFGGQP-L----DILTYKQMVGRAGRKGVDTMGESILVCKNSEKSKGIALLQGSL 513
Query: 236 EMVESQLLSC--VTEHLTAEIVQMTVSDITQAIEWMK----CSYLYVRMKKNPQNYSVRK 289
E V S L S VT + I+++ VS + + M+ C++L +K+ Q +++
Sbjct: 514 EPVHSCLQSQGEVTSTMIRAILEIIVSGVASTSQDMQTYAACTFLAADVKEGKQG--IQR 571
Query: 290 VISRDRIEKHMQEVCV 305
+RD +++ + CV
Sbjct: 572 --NRDDVQRGAVDACV 585
Score = 80 (33.2 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 3 ACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
+C + S+ +V+ + +SAT+PN++ +A WLN + + + RPV L +
Sbjct: 247 SCQADSASALACAVQIVGMSATLPNLQLVASWLNAEL-----YHTDFRPVPLLESI 297
Score = 51 (23.0 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 43/208 (20%), Positives = 78/208 (37%)
Query: 333 RLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG 392
R M + L+ D + TPV ED + W +L + K++ ++ ++ +G
Sbjct: 636 RAMKGFVLENDLHIVYLVTPV---FEDWTSIDWYRFFCLWEKLPTSMKRVAELVGVE-EG 691
Query: 393 RLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKC 452
L + G R +R Q R+ I L+ + ++ L + N +I
Sbjct: 692 FLARCVKGKVVARTER-QHRQMAIHKRFFTSLVLLDLISEIPLKEINQKYGCNRGQIQSL 750
Query: 453 MRDYFIFR------KNYKGAVNSALLAKSLYQRL-WDDSPYL--LKQLPGIGMVTAKALH 503
+ ++ N G N LL +RL + L L ++ + A+ L+
Sbjct: 751 QQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLIRVSSLNAQRARFLY 810
Query: 504 SMGIKSFETLAEADPRRIEIVTGRKYPF 531
+ G + LA AD +E PF
Sbjct: 811 ASGFLTVADLARADTVEVEAALKDALPF 838
Score = 47 (21.6 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 846 TVPSQYEECTSKTLTKSTIFEHIRKKSKN-FPVFNSNISKTMESDSAIQTNEHFPANQSE 904
T S+ +E T K+ TKS+ + + KS+N V SN ++ E+ + P + +
Sbjct: 910 TSGSEVKEHTFKSQTKSS-HKRLASKSRNSMRVSGSNGKQSPEAGQGLDECRERPDSLCK 968
Query: 905 F 905
F
Sbjct: 969 F 969
Score = 45 (20.9 bits), Expect = 3.4e-14, Sum P(4) = 3.4e-14
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 775 QLHDELDVPEETEGSIFPRATLLNPSSGSTEAELKEHGFNSS 816
QL+ L E + I P A + S+G E L E N S
Sbjct: 1412 QLNSFLQGLETQDKPIIPLAPQMRTSTGVEEESLPETSLNMS 1453
Score = 42 (19.8 bits), Expect = 6.8e-14, Sum P(4) = 6.8e-14
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 887 ESDSAIQTN--EH-FPANQSEFCIAASDVTKDANSDAVLRDGST 927
E SA TN EH ANQ+ FC + D S+ ++ +T
Sbjct: 1279 EKTSAHATNKTEHSHVANQA-FCDFGDSLYLDTQSEEIIEQMAT 1321
Score = 40 (19.1 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 774 LQLHDEL--DVPEE 785
LQLHDEL +V EE
Sbjct: 2493 LQLHDELLYEVAEE 2506
Score = 39 (18.8 bits), Expect = 1.4e-13, Sum P(4) = 1.4e-13
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 916 ANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQNHNIVSGS 957
++S L GS + + F + K+++ +N VSGS
Sbjct: 903 SSSTHSLTSGSEVKEHTFKSQTKSSHKRLASKSRNSMRVSGS 944
>RGD|1309795 [details] [associations]
symbol:Polq "polymerase (DNA directed), theta" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
Length = 2540
Score = 208 (78.3 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 74/256 (28%), Positives = 127/256 (49%)
Query: 70 SALVFCSTRKGAQEAAQQLSQTAMTYGYS-NPFIKDRE------QQERLREA------SL 116
S LVFC ++K ++ A +++ + +K E Q+ L E S
Sbjct: 340 SVLVFCPSKKWCEKVADIIAREFYNLHHQPEGLVKSSEFPPVILDQKSLLEVIDQLKRSP 399
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
S D +++ + +GV +H+ GL ++R++IEG F +G ++VL T+TL+ G+NLPA V+
Sbjct: 400 SGLDSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVI 459
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGC- 235
I+ T F + L D T QM GRAGR + G I++ + LL G
Sbjct: 460 IR-TPVFGGQP-L----DILTYKQMVGRAGRKGVDTMGESILVCKNSEKSKGIALLQGSL 513
Query: 236 EMVESQLLSC--VTEHLTAEIVQMTVSDITQAIEWMK----CSYLYVRMKKNPQNYSVRK 289
E V S L S VT + I+++ VS + + M+ C++L +K+ Q +++
Sbjct: 514 EPVHSCLQSQGEVTSTMIRAILEIIVSGVASTSQDMQTYAACTFLAADVKEGKQG--IQR 571
Query: 290 VISRDRIEKHMQEVCV 305
+RD +++ + CV
Sbjct: 572 --NRDDVQRGAVDACV 585
Score = 80 (33.2 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 3 ACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
+C + S+ +V+ + +SAT+PN++ +A WLN + + + RPV L +
Sbjct: 247 SCQADSASALACAVQIVGMSATLPNLQLVASWLNAEL-----YHTDFRPVPLLESI 297
Score = 47 (21.6 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 846 TVPSQYEECTSKTLTKSTIFEHIRKKSKN-FPVFNSNISKTMESDSAIQTNEHFPANQSE 904
T S+ +E T K+ TKS+ + + KS+N V SN ++ E+ + P + +
Sbjct: 912 TSGSEVKEHTFKSQTKSS-HKRLASKSRNSMRVSGSNGKQSPEAGQGLDECRERPDSLCK 970
Query: 905 F 905
F
Sbjct: 971 F 971
Score = 45 (20.9 bits), Expect = 1.7e-13, Sum P(4) = 1.7e-13
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 775 QLHDELDVPEETEGSIFPRATLLNPSSGSTEAELKEHGFNSS 816
QL+ L E + I P A + S+G E L E N S
Sbjct: 1405 QLNSFLQGLETQDKPIIPLAPQMRTSTGVEEESLPETSLNMS 1446
Score = 44 (20.5 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 43/211 (20%), Positives = 79/211 (37%)
Query: 333 RLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG 392
R M + L+ D + TPV ED + W +L + K++ ++ ++ +G
Sbjct: 636 RAMKGFVLENDLHIVYLVTPV---FEDWTSIDWYRFFCLWEKLPTSMKRVAELVGVE-EG 691
Query: 393 RLRFHINGDKGKRKKRIQTREEKIF---VLANDCLIGDPSVHDLSLTQDMNSISTNGSRI 449
L + G R +R Q R+ I ++ D + ++ L + N +I
Sbjct: 692 FLARCVKGKVVARTER-QHRQMAIHKRQAFFTSLVLLD-LISEIPLKEINQKYGCNRGQI 749
Query: 450 AKCMRDYFIFR------KNYKGAVNSALLAKSLYQRL-WDDSPYL--LKQLPGIGMVTAK 500
+ ++ N G N LL +RL + L L ++ + A+
Sbjct: 750 QSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLIRVSSLNAQRAR 809
Query: 501 ALHSMGIKSFETLAEADPRRIEIVTGRKYPF 531
L++ G + LA AD +E PF
Sbjct: 810 FLYASGFLTVADLARADTVEVEAALKDALPF 840
Score = 42 (19.8 bits), Expect = 3.4e-13, Sum P(4) = 3.4e-13
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 887 ESDSAIQTN--EH-FPANQSEFCIAASDVTKDANSDAVLRDGST 927
E SA TN EH ANQ+ FC + D S+ ++ +T
Sbjct: 1272 EKTSAHATNKTEHSHVANQA-FCDFGDSLYLDTQSEEIIEQMAT 1314
Score = 40 (19.1 bits), Expect = 5.3e-13, Sum P(4) = 5.3e-13
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 774 LQLHDEL--DVPEE 785
LQLHDEL +V EE
Sbjct: 2486 LQLHDELLYEVAEE 2499
Score = 39 (18.8 bits), Expect = 6.7e-13, Sum P(4) = 6.7e-13
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 916 ANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQNHNIVSGS 957
++S L GS + + F + K+++ +N VSGS
Sbjct: 905 SSSTHSLTSGSEVKEHTFKSQTKSSHKRLASKSRNSMRVSGS 946
>UNIPROTKB|F1NMU1 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
Length = 904
Score = 198 (74.8 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 71/260 (27%), Positives = 120/260 (46%)
Query: 68 GKSALVFCSTRKGAQEAA----------QQLSQTAMTYGYSNPFIKDREQQERLREA--- 114
G S L+FC ++ ++ A QQ + + +P + DRE + + +
Sbjct: 302 GHSVLLFCPSKNWCEKLADIIAREFYSLQQAEKGSAKNSSLSPVVVDREGIDEVLDQLRR 361
Query: 115 SLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHT 174
SLS D +Q + +GV +H+ GL +R++IEG F + ++VL T+TL+ G+NLPA
Sbjct: 362 SLSGLDSVLQRTLPWGVAFHHAGLTFDERDIIEGAFRQSTIRVLAATSTLSSGVNLPARR 421
Query: 175 VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNG 234
V+I+ T F G + D T QM GRAGR + G I++ + LL G
Sbjct: 422 VIIR-TPMFG---GTLL--DVLTYKQMAGRAGRKGVDTEGESILVCKPSERSKGTALLQG 475
Query: 235 C-EMVESQLL----SCVTEHLTAEIVQMTVSDITQAIE----WMKCSYLYVRMKKNPQNY 285
+ V S LL V + I+++ VS + + + C+ L +K N +
Sbjct: 476 SLKPVRSCLLRKEGEGVASSMKRAILEIIVSGVANTPDDVQTYASCTLLASSLKDNKREN 535
Query: 286 SVRKVISRDRIEKHMQEVCV 305
+ D+++ E C+
Sbjct: 536 EKEQ----DKVQTGPIEACI 551
Score = 68 (29.0 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 7 EMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
+MKS ++ + +SAT+PN+ +A WL+ + + + RPV L
Sbjct: 215 KMKSPGFGGIQVVGMSATLPNLGLLASWLDAEL-----YCTDFRPVPL 257
Score = 48 (22.0 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 45/211 (21%), Positives = 82/211 (38%)
Query: 333 RLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG 392
R M + L+ D + TPV ED + W +L + K++ ++ I+ +G
Sbjct: 602 RAMKSFVLENDLHIVYLVTPV---YEDWTTIDWYQFFCLWEKLPASMKRVAELVGIE-EG 657
Query: 393 RLRFHINGD---KGKRKKRIQTREEKIFV-LANDCLIGDPSVHDLSLTQ-----DMNSIS 443
L + G K +++ R ++ F LA LI + + D++ + S+
Sbjct: 658 FLARSVKGKITAKTEKQYRQMAIHKRFFTSLALLDLISEVPLKDMTKKYGCSRGQLQSLQ 717
Query: 444 TNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTA---K 500
+ + A + +F N G N LL RL L L + ++ A +
Sbjct: 718 QSAATYAGMVT---VFC-NRLGWHNMELLLSQFQSRLTFGVHRELCDLVRVSLLNAQRAR 773
Query: 501 ALHSMGIKSFETLAEADPRRIEIVTGRKYPF 531
L++ G + LA+A P + PF
Sbjct: 774 MLYNAGFVTVADLAKASPGDVATALKNSVPF 804
>UNIPROTKB|E1BMC0 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887
GO:GO:0043142 EMBL:DAAA02001581 EMBL:DAAA02001582 EMBL:DAAA02001583
IPI:IPI00687324 Ensembl:ENSBTAT00000002501 OMA:CFSDESI
Uniprot:E1BMC0
Length = 2728
Score = 202 (76.2 bits), Expect = 2.4e-13, Sum P(4) = 2.4e-13
Identities = 67/212 (31%), Positives = 111/212 (52%)
Query: 106 EQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLA 165
E ++L+ S S D +Q + +GV +H+ GL ++R++IEG F +G ++VL T+TL+
Sbjct: 523 EVMDQLKR-SPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGQIRVLAATSTLS 581
Query: 166 HGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFN---DTGTVIIMTRR 222
G+NLPA V+I+ T F+ G + D T QM GRAGR + +TG I++ +
Sbjct: 582 SGVNLPARRVIIR-TPIFS---GRLL--DILTYKQMVGRAGRKGVDTVGNTGESILVCKN 635
Query: 223 ETVHLYENLLNGC-EMVESQLLSCVTEHLTA-------EIVQMTVSDITQAIE-WMKCSY 273
LL G + V S L E +T+ EI+ V+ +Q I+ + C++
Sbjct: 636 SEKSKGITLLQGSLKPVHSCLQRHEGEEVTSSMIRAILEIIVGGVASTSQDIQTYASCTF 695
Query: 274 LYVRMKKNPQNYSVRKVISRDRIEKHMQEVCV 305
L MK+ Q ++K ++D ++ E CV
Sbjct: 696 LAASMKEGKQG--IQK--NKDSVQLGAIEACV 723
Score = 75 (31.5 bits), Expect = 2.4e-13, Sum P(4) = 2.4e-13
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 3 ACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
+C ++ +V+ + +SAT+PN+E +A WLN + + + RPV L +
Sbjct: 378 SCQADLAIPLSNAVQIVGMSATLPNLELVASWLNAEL-----YHTDFRPVPLLESI 428
Score = 60 (26.2 bits), Expect = 2.4e-13, Sum P(4) = 2.4e-13
Identities = 44/208 (21%), Positives = 79/208 (37%)
Query: 333 RLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG 392
R M + L+ D + TPV ED + W +L + K++ ++ ++ +G
Sbjct: 774 RAMKGFVLENDLHIVYLVTPV---FEDWTTIDWYRFFCLWEKLPASMKRVAELVGVE-EG 829
Query: 393 RLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKC 452
L + G+ R +R Q R+ I L+ + ++ L + N +I
Sbjct: 830 FLARCVKGNLVARTER-QHRQMAIHKRFFTSLVLLDLISEVPLKEINQKYGCNRGQIQSL 888
Query: 453 MRDYFIFR------KNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKA---LH 503
+ ++ N G N LL +RL L L + ++ A+ L+
Sbjct: 889 QQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARFLY 948
Query: 504 SMGIKSFETLAEADPRRIEIVTGRKYPF 531
+ G + LA AD +E V PF
Sbjct: 949 ASGFLTVSDLARADVAEVESVLKNAAPF 976
Score = 40 (19.1 bits), Expect = 2.4e-13, Sum P(4) = 2.4e-13
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 774 LQLHDEL--DVPEE 785
LQLHDEL +V EE
Sbjct: 2674 LQLHDELLYEVAEE 2687
Score = 39 (18.8 bits), Expect = 3.0e-13, Sum P(4) = 3.0e-13
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 803 STEAELKEHGF 813
S+E+E+KEH F
Sbjct: 1050 SSESEVKEHKF 1060
>TAIR|locus:2125677 [details] [associations]
symbol:AT4G32700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA;IGI] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IGI] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00482 SMART:SM00490 GO:GO:0005524
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0009640 GO:GO:0006310 GO:GO:0010468 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:AB192295 IPI:IPI00570534 RefSeq:NP_001078482.1
UniGene:At.48069 ProteinModelPortal:Q588V7 SMR:Q588V7 STRING:Q588V7
PRIDE:Q588V7 EnsemblPlants:AT4G32700.2 GeneID:829406
KEGG:ath:AT4G32700 TAIR:At4g32700 HOGENOM:HOG000030860
PhylomeDB:Q588V7 ProtClustDB:CLSN2698843 Genevestigator:Q588V7
Uniprot:Q588V7
Length = 2154
Score = 215 (80.7 bits), Expect = 2.4e-13, Sum P(5) = 2.4e-13
Identities = 64/217 (29%), Positives = 111/217 (51%)
Query: 68 GKSALVFCSTRKGAQEAAQQLSQTAMTY-----GYSNPFIKDREQQERLREASLSCSDKQ 122
G S L+FCS+RKG + A+ +S+ G ++ F+ R + LR S S D
Sbjct: 769 GNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDALRR-SPSGVDPV 827
Query: 123 MQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQY 182
++ + GV YH+ GL +++R ++E + KG V+VL T+TLA G+NLPA V+ +
Sbjct: 828 LEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPM- 886
Query: 183 FNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNG-CEMVESQ 241
++ +++ R QM GRAGR + G +++ + + LLN C ++S
Sbjct: 887 IGRD---FIDGTRYK--QMSGRAGRTGIDTKGDSVLICKPGELKRIMALLNETCPPLQS- 940
Query: 242 LLSCVTEHLTAEIVQMTVSDITQAIE----WMKCSYL 274
LS +T I+++ I Q + +++C+ L
Sbjct: 941 CLSEDKNGMTHAILEVVAGGIVQTAKDIHRYVRCTLL 977
Score = 63 (27.2 bits), Expect = 2.4e-13, Sum P(5) = 2.4e-13
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 9 KSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
K+ ++ + +SAT+PN+ +A+WL + + E RPV L
Sbjct: 683 KADPAHGLQIVGMSATMPNVGAVADWLQAAL-----YQTEFRPVPL 723
Score = 51 (23.0 bits), Expect = 2.4e-13, Sum P(5) = 2.4e-13
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 954 VSGSCCRTFRKLNLSPIASVAGTAEPSSSIKMLS---FDISMMKKQKCSPNTSTRQ 1006
VS T R N PI + GT PS+ + +LS F I + ++ P + Q
Sbjct: 1382 VSSEINLTSRLPNFRPIGTAVGTNGPSA-VSILSSDTFPIPVYDNREIKPKDNVEQ 1436
Score = 46 (21.3 bits), Expect = 2.4e-13, Sum P(5) = 2.4e-13
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEA 516
L +P I A+AL+ G+++ + +AEA
Sbjct: 1223 LTSIPYIKGSRARALYKAGLRTSQAIAEA 1251
Score = 41 (19.5 bits), Expect = 2.4e-13, Sum P(5) = 2.4e-13
Identities = 17/77 (22%), Positives = 33/77 (42%)
Query: 259 VSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELS------ 312
+SD Q + K ++ + + K Q SV +V ++ + M + + S
Sbjct: 1134 LSD-EQMLRVCKRFFVALILSKLVQEASVTEVCEAFKVARGMVQALQENAGRFSSMVSVF 1192
Query: 313 CHQMIWTDEDGFLLKPQ 329
C ++ W D +G + K Q
Sbjct: 1193 CERLGWHDLEGLVAKFQ 1209
Score = 38 (18.4 bits), Expect = 4.8e-13, Sum P(5) = 4.8e-13
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 358 EDALHTVCHAEEIAW 372
+D+L +CH + + W
Sbjct: 991 QDSLRWLCHRKFLEW 1005
>UNIPROTKB|O75417 [details] [associations]
symbol:POLQ "DNA polymerase theta" species:9606 "Homo
sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
Length = 2590
Score = 186 (70.5 bits), Expect = 4.5e-13, Sum P(5) = 4.5e-13
Identities = 72/258 (27%), Positives = 125/258 (48%)
Query: 70 SALVFCSTRKGAQEAAQQLSQTAMTYGY-SNPFIKDRE------QQERLREA--SL---- 116
S L+FC ++K ++ A +++ + + +K E +Q+ L E L
Sbjct: 339 SVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLP 398
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
S D +Q + +GV +H+ GL ++R++IEG F +G ++VL T+TL+ G+NLPA V+
Sbjct: 399 SGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVI 458
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGC- 235
I+ T F G + D T QM GRAGR + G I++ + LL G
Sbjct: 459 IR-TPIFG---GRPL--DILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSL 512
Query: 236 EMVESQLLSCVTEHLTA-------EIVQMTVSDITQAIE-WMKCSYLYVRMKKNPQNYSV 287
+ V S L E +T EI+ V+ +Q + + C++L MK+ Q +
Sbjct: 513 KPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGKQG--I 570
Query: 288 RKVISRDRIEKHMQEVCV 305
++ +++ ++ E CV
Sbjct: 571 QR--NQESVQLGAIEACV 586
Score = 87 (35.7 bits), Expect = 4.5e-13, Sum P(5) = 4.5e-13
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 3 ACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
+C ++ SS +V+ + +SAT+PN+E +A WLN + + + RPV L V
Sbjct: 246 SCQADLASSLSNAVQIVGMSATLPNLELVASWLNAEL-----YHTDFRPVPLLESV 296
Score = 54 (24.1 bits), Expect = 4.5e-13, Sum P(5) = 4.5e-13
Identities = 33/169 (19%), Positives = 66/169 (39%)
Query: 372 WIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVH 431
W +L + K++ ++ ++ +G L + G R +R Q R+ I L+ +
Sbjct: 673 WEKLPTSMKRVAELVGVE-EGFLARCVKGKVVARTER-QHRQMAIHKRFFTSLVLLDLIS 730
Query: 432 DLSLTQDMNSISTNGSRIAKCMRDYFIFR------KNYKGAVNSALLAKSLYQRLWDDSP 485
++ L + N +I + ++ N G N LL +RL
Sbjct: 731 EVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQ 790
Query: 486 YLLKQLPGIGMVTA---KALHSMGIKSFETLAEADPRRIEIVTGRKYPF 531
L L + ++ A + L++ G + LA A+ +E++ PF
Sbjct: 791 RELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVEVEVILKNAVPF 839
Score = 52 (23.4 bits), Expect = 4.5e-13, Sum P(5) = 4.5e-13
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 661 QSPLFHTP---EEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDEDLGEGKT 717
+SP+FH+P EE + +NE + T +Q +++ L ++ LL + + +T
Sbjct: 1413 ESPIFHSPILLEENGLFLKKNEVSV-TDSQ-LNSFLQGYQTQETVKPVILL---IPQKRT 1467
Query: 718 AAGVEDDDCRVITE 731
GVE + C + E
Sbjct: 1468 PTGVEGE-CLPVPE 1480
Score = 49 (22.3 bits), Expect = 8.8e-13, Sum P(5) = 8.8e-13
Identities = 35/173 (20%), Positives = 71/173 (41%)
Query: 577 TKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSS-NPQQGKLTVKADLIFEEYI 635
T+R A +IV EE M+L + + + +P ++ S+ + + VK +
Sbjct: 871 TEREAAALIV--EEARMILQQDLVEMGVQWNPCALLHSSTCSLTHSESEVKEHTFISQT- 927
Query: 636 GVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTPAQEIDNLLSS 695
++KL +SN+ + S + H+P +++D N++ T + N +
Sbjct: 928 -KSSYKKLTSKNKSNTIFS------DSYIKHSPN---IVQDLNKSREHTSSFNC-NFQNG 976
Query: 696 TMEDSSMPSFSLLDE-DLGEGKTAAGVEDDDCRVITEKKVFQHIREKARNFPI 747
E + F L K G ++ + ++KKV Q +K + P+
Sbjct: 977 NQEHQTCSIFRARKRASLDINKEKPGASQNEGKT-SDKKVVQTFSQKTKKAPL 1028
Score = 47 (21.6 bits), Expect = 1.7e-12, Sum P(5) = 1.7e-12
Identities = 39/161 (24%), Positives = 63/161 (39%)
Query: 805 EAELKEHGFNSSLTAAGNLGTINLLDDTGAFSLPKFFMFEDTVPSQYEECTSKTLTKSTI 864
+ +L E G + A + T +L T + S K F S Y++ TSK + +TI
Sbjct: 888 QQDLVEMGVQWNPCALLHSSTCSL---THSESEVKEHTFISQTKSSYKKLTSKNKS-NTI 943
Query: 865 FEHIRKKSKNFPVFNSNISKTMESDSAIQTNEHFPANQSEFCIAASDVTKDANSDAVLRD 924
F K+ P +++K+ E S+ N NQ + K A+ D + ++
Sbjct: 944 FSD--SYIKHSPNIVQDLNKSREHTSSFNCNFQ-NGNQEHQTCSIFRARKRASLD-INKE 999
Query: 925 GSTISDMEFGALDKNAND--NKVCTKQNHNIVSGSCCRTFR 963
S E DK ++ K N S R+FR
Sbjct: 1000 KPGASQNEGKTSDKKVVQTFSQKTKKAPLNFNSEKMSRSFR 1040
Score = 40 (19.1 bits), Expect = 4.5e-13, Sum P(5) = 4.5e-13
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 774 LQLHDEL--DVPEE 785
LQLHDEL +V EE
Sbjct: 2536 LQLHDELLYEVAEE 2549
Score = 39 (18.8 bits), Expect = 1.1e-12, Sum P(5) = 1.1e-12
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 990 ISMMKKQKCSPNTSTRQCCPLPLASTGKTKEV--DSF 1024
+ ++ QK +P +C P+P S + + DSF
Sbjct: 1458 VILLIPQKRTPTGVEGECLPVPETSLNMSDSLLFDSF 1494
Score = 37 (18.1 bits), Expect = 1.6e-11, Sum P(5) = 1.6e-11
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 796 LLNPSSGS---TEAELKEHGFNS 815
LL+ S+ S +E+E+KEH F S
Sbjct: 903 LLHSSTCSLTHSESEVKEHTFIS 925
>UNIPROTKB|F1PXD9 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
OMA:NECHITF Uniprot:F1PXD9
Length = 1835
Score = 195 (73.7 bits), Expect = 9.3e-13, Sum P(4) = 9.3e-13
Identities = 80/287 (27%), Positives = 136/287 (47%)
Query: 70 SALVFCSTRKGAQEAAQQLS-QTAMTYGYSNPFIKDRE------QQERLREA------SL 116
S L+FC ++K ++ A ++ + + + ++ E +Q+ L E S
Sbjct: 248 SVLIFCPSKKWCEKLADIIACEFYNLHHQATGLVRSSELPPVVLEQKGLLEVMDQLKRSP 307
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
S D +Q I +GV +H+ GL ++R++IEG F +G ++VL T+TL+ G+NLPA V+
Sbjct: 308 SGLDSVLQKTIPWGVAFHHAGLTFEERDIIEGAFRQGQIRVLAATSTLSSGVNLPARRVI 367
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGC- 235
I+ T F + L D T QM GRAGR + G I++ + LL G
Sbjct: 368 IR-TPIFGGQP-L----DILTYKQMVGRAGRKGVDTVGESILVCKNSEKSKGIALLQGSL 421
Query: 236 EMVESQLLSCVTEHLTA-------EIVQMTVSDITQAIE-WMKCSYLYVRMKKNPQNYSV 287
+ V S L E +TA EI+ V+ +Q ++ + C++L MK+
Sbjct: 422 KPVRSCLQRQKGEEVTASMIRAILEIIVGGVASTSQDMQTYASCTFLAASMKEG--KLGS 479
Query: 288 RKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDE--DGFLLKPQEPG 332
+K ++D ++ E CV + E Q+ T + +G + P G
Sbjct: 480 QK--NQDCVQLGAIEACVMWLLENEFIQITETGDGTEGTVYHPTHLG 524
Score = 84 (34.6 bits), Expect = 9.3e-13, Sum P(4) = 9.3e-13
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 3 ACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIK-RFGEEMRPVKLTTKVFDI 61
+C ++ S +V+ + +SAT+PN+E +A WLN + R + VK+ ++D
Sbjct: 155 SCQADLASPLSNAVQIVGMSATLPNLEIVASWLNAELYHTNFRPVPLLESVKIGNSIYDS 214
Query: 62 LMQYSR 67
M+ R
Sbjct: 215 SMKLVR 220
Score = 45 (20.9 bits), Expect = 9.3e-13, Sum P(4) = 9.3e-13
Identities = 33/169 (19%), Positives = 65/169 (38%)
Query: 372 WIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVH 431
W +L + K++ ++ ++ +G L + G R +R Q R+ I L+ +
Sbjct: 582 WEKLPTSMKRVAELVGVE-EGFLARCVKGKVVARTER-QHRQMAIHKRFFTSLVLLDLIS 639
Query: 432 DLSLTQDMNSISTNGSRIAKCMRDYFIFR------KNYKGAVNSALLAKSLYQRLWDDSP 485
++ L + + +I + ++ N G N LL +RL
Sbjct: 640 EVPLKEINQKYGCSRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQ 699
Query: 486 YLLKQLPGIGMVTAKA---LHSMGIKSFETLAEADPRRIEIVTGRKYPF 531
L L + ++ A+ L++ G + LA A+ +E V PF
Sbjct: 700 RELCDLVRVSLLNAQRARFLYASGFLTVADLARANIAEVEAVLKNAVPF 748
Score = 40 (19.1 bits), Expect = 9.3e-13, Sum P(4) = 9.3e-13
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 670 EVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDEDLGE 714
E+C ++++ TA A E+ + +T+ + P ++ ED E
Sbjct: 1479 EICPVQEKLNTAVSLRALELSD--PATI-GNGYPQREVIGEDKDE 1520
Score = 38 (18.4 bits), Expect = 6.0e-12, Sum P(5) = 6.0e-12
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 795 TLLNP---SSGSTEAELKEHGF 813
+LLN SS S+E+E+KE F
Sbjct: 811 SLLNSDTQSSPSSESEVKEQKF 832
Score = 37 (18.1 bits), Expect = 6.0e-12, Sum P(5) = 6.0e-12
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 856 SKTLTKSTIFEHIRKKSKNF 875
+K + ++ +FE +K++ NF
Sbjct: 921 TKKVVQTLLFEKTKKEALNF 940
>ZFIN|ZDB-GENE-060503-421 [details] [associations]
symbol:helq "helicase, POLQ-like" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR010995 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060503-421 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
EMBL:BX649525 CTD:113510 IPI:IPI00799443 RefSeq:XP_691411.3
UniGene:Dr.86132 Ensembl:ENSDART00000109412 GeneID:562952
KEGG:dre:562952 NextBio:20884669 Uniprot:F1Q4P2
Length = 1010
Score = 195 (73.7 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 66/231 (28%), Positives = 113/231 (48%)
Query: 47 EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNP-FIKDR 105
++M P + +++ Q +S L+FC+T+K + A + + Y N FIK +
Sbjct: 481 QKMDPDHIIALATEVIPQ----QSCLIFCATKKNCENLAGMICK------YLNKEFIKHK 530
Query: 106 EQQERLREASLSCSDKQ-----MQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160
E ++ + L S +Q I +G+ YH+ GL +R L+E + G + +L
Sbjct: 531 EAEKAILLGELKSSGNGSLCPVLQKTIPFGLAYHHSGLTSDERKLVEEAYSSGVLCLLTC 590
Query: 161 TNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220
T+TLA GINLPA V+++S Y + +++ RS QM GRAGR + G I++
Sbjct: 591 TSTLAAGINLPARRVILRSP-YVAAD---FLK--RSQYKQMVGRAGRAGIDAMGESILIL 644
Query: 221 RRETVHLYENLLNG-CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMK 270
+ + ++ + LL E S LL L + I+ + IT +E +K
Sbjct: 645 QDKDINTAKKLLCAPMEKCYSNLLHDGGRGLLSLILSLIGLKITTTVEQVK 695
Score = 57 (25.1 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI 521
L ++ G+ AK L+S G K+ LA ADP+ +
Sbjct: 930 LMEVSGVLEHRAKQLYSAGYKTLSHLANADPQTL 963
Score = 48 (22.0 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
S + + +SAT+ N++D+ +L + + RPV+L
Sbjct: 411 STQVIGMSATLGNVKDLQSFLRA-----ENYTNNFRPVEL 445
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 192 (72.6 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 76/303 (25%), Positives = 140/303 (46%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK---DREQQERLREASLSCSDK-QMQSYI 127
+VFC ++ A L+ T +T I+ D+ RL+ + + ++QS +
Sbjct: 653 VVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFS-RLKGSDRNLPQVLRLQSLL 711
Query: 128 LYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEK 187
G+G H+ GL + ++E LF +G ++VL +T T A G+N PA TVV + + F+ ++
Sbjct: 712 HRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDGKE 771
Query: 188 GLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVH---LYENLLNGCEMVESQ--L 242
+ T QM GRAGR + TGTV++M R E L ++ +ESQ L
Sbjct: 772 FRQLLPGEYT--QMAGRAGRRGLDKTGTVVVMCRDEVPDESDLRRVIVGSATRLESQFRL 829
Query: 243 LSCVTEHLTAEIVQMTVSDITQAIEWMKCSYL-YVRMKKNPQNYSVRKVISRDRIEKHMQ 301
+ HL + ++ V D+ +K S+ + KK P+ + +I R KH++
Sbjct: 830 TYIMILHLL-RVEELKVEDM------LKRSFAEFHAQKKLPEKQQLL-MIKRSLPTKHIE 881
Query: 302 EVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDAL 361
C++ + + ++ + + + K E + + Y F ++ G+++ L
Sbjct: 882 --CIKGEPAIEDYYDMYMEANEYNNKMSE-AVMQSPYAQSFLVQGRVVVMKSGMGIDNLL 938
Query: 362 HTV 364
V
Sbjct: 939 GIV 941
Score = 69 (29.3 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQG-IKRFGEEMRPVKLTTKVFDILMQYSRGKSALVF 74
+ F+ +SAT+PN + A+W+ Q I+ G RPV L +F Y ++ +
Sbjct: 497 INFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKVCENEVFL 556
Query: 75 CSTRKGAQEAAQQLSQTAMT 94
K A+++ ++ + A++
Sbjct: 557 SKGIKDAKDSQKKKNSNAVS 576
Score = 37 (18.1 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 669 EEVCVIEDENETA-AQTPAQEID 690
++V ++ED N+ A +QT Q +D
Sbjct: 1045 DQVRLLEDGNKAAFSQTVQQLLD 1067
>UNIPROTKB|E9PT19 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1560216
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 IPI:IPI00958253 Ensembl:ENSRNOT00000002974
ArrayExpress:E9PT19 Uniprot:E9PT19
Length = 879
Score = 189 (71.6 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 71/280 (25%), Positives = 133/280 (47%)
Query: 47 EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR- 105
+++ P +L V +++ YS LVFC ++K + A+ L + ++ Y N +++
Sbjct: 515 KKVDPDRLVALVTEVIPNYS----CLVFCPSKKNCENVAEMLCKF-LSRDYLNHREEEKG 569
Query: 106 EQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLA 165
E + LR ++ I +GV YH+ GL +R L+E + G + + T+TLA
Sbjct: 570 ELIKSLRNVGHGKVCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLA 629
Query: 166 HGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV 225
G+NLPA V++++ N +++ R+ QM GRAGR + G I++ + +
Sbjct: 630 AGVNLPARRVILRAPYVANT----FLK--RNQYKQMIGRAGRAGIDTAGESILLLQEKDK 683
Query: 226 HLYENLLNG-CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQN 284
L+NG E S L+ T+ + + + + I +++ +Y M N
Sbjct: 684 QQVLGLINGPLEDCHSHLVEEFTKGIQSLFLSLIGLKIAESL-----GDIYQFM--NGTL 736
Query: 285 YSVR-KVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDG 323
+ V+ K + R EK + EV V ++ L+ ++ D G
Sbjct: 737 FGVQQKTLLR---EKSLWEVTVGALEHLTEKGLLQKDSHG 773
Score = 55 (24.4 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTT--KVFDILMQY-SRGKSA 71
+ + + +SAT+ N+ED+ +L + + + RPV+L KV D + + SR
Sbjct: 445 TTQIIGMSATLNNVEDLQAFLKA-----EYYTSQFRPVELKEFLKVNDTIYEVDSRAVDG 499
Query: 72 LVF 74
+ F
Sbjct: 500 MTF 502
>UNIPROTKB|F1NYH9 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
Length = 995
Score = 201 (75.8 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 113/510 (22%), Positives = 237/510 (46%)
Query: 47 EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE 106
E+ P + V +++ +YS L+FC T+K + A + + ++ +++E
Sbjct: 467 EKADPDHIVALVTEVIPKYS----CLIFCPTKKNCENVATMVCKYLNKEFRAH---REKE 519
Query: 107 QQE---RLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNT 163
+Q+ L++ ++ I +GV YH+ GL +R IE + +G + +L T T
Sbjct: 520 KQDLIKNLKDIGNGSICPVLRQTIPFGVAYHHSGLTNDERKSIEEAYSRGVLCLLACTAT 579
Query: 164 LAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223
LA G+NLPA V++++ Y E +++ ++ QM GRAGR ++ G I++ + +
Sbjct: 580 LAAGVNLPARRVILRAP-YVASE---FLK--KNQYKQMIGRAGRAGIDNAGESILVVQEK 633
Query: 224 TVHLYENLLNG-CEMVESQLLSCVT---EHLTAEIVQMTVSDITQAIEWMKC-SYLYVRM 278
HL +L+ E S LL +T ++L +V + ++ + + C + L V+
Sbjct: 634 DKHLVRDLITSPLENCYSNLLPEITKGMQYLLLSLVGLKIAVTQEEVYSFMCHTLLGVQQ 693
Query: 279 KKNPQNYSVRKVISRDRIEKHMQEVCVQ-KV-DELSCHQMIWTDEDGFLLKPQEPGRLMT 336
+ + S+ +++ RD +E +++ ++ K+ D+ S + T L K G +
Sbjct: 694 QLLLKEKSLSEIV-RDELENLIEKGLLKGKIMDQNSKSTLTVT----LLGKATYKGSIDV 748
Query: 337 KYY-LKFDTMKYIMQTPVNCGLEDALHTV-----------CHAEEIAWI----QLRRNEK 380
Y L + ++ ++ V LE +LH + C + + ++ QL E+
Sbjct: 749 SYCNLLYKELRKGLEGLV---LESSLHLLYLATPYDMVSNCSPDWMIYLRQFNQLSSAEQ 805
Query: 381 KLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFV-LANDCLIGDPSVHDLSLTQDM 439
K+ +++ + + + +G + RK T ++++ L+ + +V +S +M
Sbjct: 806 KVADMVGVP-ESFIAKKASG-QAIRKNVDSTAVNRLYLSFVLYALLKETNVWSVSEKFNM 863
Query: 440 N-----SISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRL-WDDSPYL--LKQL 491
+ ++ T+ + A C+ + + + V ALL + L +RL + L L ++
Sbjct: 864 SRGYVQNLLTSAASFASCILHFCEELEEFW--VYKALLTE-LTKRLTYCVKTELIPLMEV 920
Query: 492 PGIGMVTAKALHSMGIKSFETLAEADPRRI 521
G+ AK L++ G K+ LA A+P +
Sbjct: 921 AGVLEARAKQLYNAGYKTLAHLANANPETL 950
Score = 44 (20.5 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 19 LAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTT--KVFDILMQY-SRGKSALVF 74
+ +SAT+ N+ D+ ++L + + + RPV+L K+ D + + S+ ++ F
Sbjct: 401 VGMSATLNNVGDLQKFLQA-----EYYTKNFRPVELKEYIKIRDTIYEVDSKAENGFTF 454
>DICTYBASE|DDB_G0279107 [details] [associations]
symbol:DDB_G0279107 "Helicase POLQ-like"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
ProtClustDB:CLSZ2430718 Uniprot:Q54X98
Length = 1238
Score = 172 (65.6 bits), Expect = 6.1e-11, Sum P(4) = 6.1e-11
Identities = 51/151 (33%), Positives = 80/151 (52%)
Query: 70 SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCS-DKQMQSYIL 128
S L+FC+++ A QL+++ N +RE +L E+S C ++ + I+
Sbjct: 683 SVLIFCASKLLTVSLALQLAKSFPQAILDNRR-DEREILIQLIESSNGCKVEEDFKRMIM 741
Query: 129 YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
GV YHN L +R +IE F + + VLC T+TL+ G+NLPA V+++S + G
Sbjct: 742 AGVAYHNADLTNDEREVIERGFKERSLLVLCATSTLSTGVNLPARRVILRSPRM-----G 796
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
+ RS QM GRAGR ++ G I+M
Sbjct: 797 RNVLDIRS-YRQMVGRAGRAGIDEFGESILM 826
Score = 68 (29.0 bits), Expect = 6.1e-11, Sum P(4) = 6.1e-11
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 12 SLASVRFLAVSATIPNIEDIAEWLNVPV-QGIKRFGEEMRPVKLTTKVFD 60
S ++ + +SATIPNI+++ +W V QG R +K+ K++D
Sbjct: 603 SKGQIQIIGMSATIPNIDNLQKWFRGGVYQGTFRPVPLTEYIKIGDKLYD 652
Score = 60 (26.2 bits), Expect = 6.1e-11, Sum P(4) = 6.1e-11
Identities = 21/98 (21%), Positives = 48/98 (48%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGN-HIKESLLSLPPKV 546
L ++ G+ A+AL + G K+ +++A A P + + F + I +++ K+
Sbjct: 1135 LVEINGVKQARARALWAAGFKTVKSIALASPEELNKAV-KLGKFNSISIAATIIREAGKL 1193
Query: 547 -DMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYAD 583
+ K EE++ + +L++ ++ S +T +Y D
Sbjct: 1194 LERKSEELRAKAD---ELILDMSIKSTKTTTTTTNYPD 1228
Score = 39 (18.8 bits), Expect = 6.1e-11, Sum P(4) = 6.1e-11
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 346 KYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGR 393
+YI + VN +E AL H + I+ Q N+KK + D DG+
Sbjct: 899 EYIRKL-VNDSVE-ALIKSGHIQ-ISCNQPDPNDKKTIGTAKFDLDGK 943
>MGI|MGI:2176740 [details] [associations]
symbol:Helq "helicase, POLQ-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
[GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
helicase complex" evidence=ISO] InterPro:IPR001650
InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
Length = 1069
Score = 193 (73.0 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
Identities = 70/273 (25%), Positives = 135/273 (49%)
Query: 47 EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR- 105
++M P +L V +++ YS LVFC ++K + A+ L + ++ Y N K++
Sbjct: 519 KKMDPDRLVALVTEVIPNYS----CLVFCPSKKNCENVAEMLCKF-LSKDYLNHREKEKC 573
Query: 106 EQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLA 165
E + LR ++ + +G+ YH+ GL ++R L+E + G + +L T+TLA
Sbjct: 574 EVIKSLRNIGNGKVCPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLA 633
Query: 166 HGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV 225
G+NLPA V++++ N +++ R+ QM GRAGR + G I++ + +
Sbjct: 634 AGVNLPARRVILRAPYVANT----FLK--RNQYKQMVGRAGRAGIDTAGESILLLQEKDK 687
Query: 226 HLYENLLNG-CEMVESQLLSCVTEHLTAEIVQMTVSDITQAI----EWMKCSYLYVRMKK 280
L++G E S L+ T+ + A + + I ++ ++M ++ V+ K
Sbjct: 688 QQVLELISGPLETCCSHLVEEFTKGIQALFLSLIGLKIAASLGDIYQFMSGTFFGVQQKI 747
Query: 281 NPQNYSVRKVISRDRIEKHMQEVCVQKVDELSC 313
+ S+ + I+ D +E H+ E + + D SC
Sbjct: 748 LLKEKSLWE-ITVDALE-HLTEKGLLQKD--SC 776
Score = 52 (23.4 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTT--KVFDILMQY-SRGKSA 71
+ + + +SAT+ N+ED+ +L + + + RPV+L KV D + + S+
Sbjct: 449 TTQIIGMSATLNNVEDLQAFLKA-----EYYTSQFRPVELKEFLKVNDTIYEVDSQAADG 503
Query: 72 LVF 74
+ F
Sbjct: 504 MTF 506
Score = 45 (20.9 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADP 518
L ++ G+ AK L++ G +S LA A+P
Sbjct: 971 LMEVTGVLEGRAKQLYNAGYRSIMHLANANP 1001
>ZFIN|ZDB-GENE-040724-232 [details] [associations]
symbol:si:rp71-1p14.5 "si:rp71-1p14.5" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 ZFIN:ZDB-GENE-040724-232 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0003887 EMBL:CU928848
EMBL:CU695000 IPI:IPI00492363 Ensembl:ENSDART00000065556
Uniprot:F1Q4P4
Length = 2576
Score = 174 (66.3 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 58/211 (27%), Positives = 102/211 (48%)
Query: 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQ-----QERLRE--ASLSCS- 119
G SAL+FC ++ ++ A + + + Q QE L + A L +
Sbjct: 542 GHSALLFCPSKNWCEKLADSIGREFYNLHHKEMQSGSGGQSISLNQEGLLDVLAQLKRTP 601
Query: 120 ---DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
D +Q + +GV +H+ GL +R+++EG F +G ++VL T+TL+ G+NLPA V+
Sbjct: 602 AGLDHVLQRTVPWGVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTLSSGVNLPARRVI 661
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGC- 235
I+ T FN G + D T QM GRAGR + G +++ + +L+ G
Sbjct: 662 IR-TPVFN---GHLL--DILTYKQMVGRAGRKGVDTIGESVLVCKEAERAKGMSLIQGSL 715
Query: 236 EMVESQLLSCVTEHLTAEIVQMTVSDITQAI 266
+ + S L+ E +T +++ + I +
Sbjct: 716 KPISSCLVKREGEGVTTSMLRAILEIIVGGV 746
Score = 71 (30.1 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNVPVQGIK-RFGEEMRPVKLTTKVFD 60
S+ V+ + +SAT+PN++ +A WL+ + R M VK+ T ++D
Sbjct: 459 STSTGVQIIGMSATLPNLDLLARWLSAELYSTNYRPVPLMEWVKIGTNIYD 509
Score = 55 (24.4 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 42/173 (24%), Positives = 73/173 (42%)
Query: 372 WIQLRRNEKKLLNVINIDKDGRLRFHINGD---KGKRKKRIQTREEKIF--VLANDCLIG 426
W QL K++ ++ I ++G L + G K ++++R ++ F ++ D +
Sbjct: 874 WEQLPSAMKRVAEMVGI-QEGFLARSVGGKLIAKTEKQRRQMAIHKRFFTTLVLLDLVSE 932
Query: 427 DP--SV---HDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLW 481
+P +V + S Q + S+ + S A + +F N G N LL RL
Sbjct: 933 EPLGAVAKKYGCSRGQ-LQSLQQSASTYAGMVT---VFC-NRLGWHNLELLLSQFQSRLS 987
Query: 482 DDSPYLLKQLPGIGMVTA---KALHSMGIKSFETLAEADPRRIEIVTGRKYPF 531
L L I ++TA + L+S G + LA AD +E + PF
Sbjct: 988 FGVQRELCDLVRISLLTAQRARTLYSSGFVTVAELARADVTEVEKALRKAIPF 1040
Score = 47 (21.6 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 880 SNISKTMESDSAIQTNEHFPANQSEFCIAA-SDVTKDANS-DAVLRDGSTISDMEFGALD 937
+N+ KTM+ DS + + E P + E + V K N+ D + T+
Sbjct: 1163 TNLEKTMDVDSGVSSAECQPDKKCELQSSVLHKVLKSINAKDKGCDNNQTVESSSESLQR 1222
Query: 938 KNANDNKVCTKQNHNIVS 955
+N+ N + + + VS
Sbjct: 1223 RNSCLNTCISGNDQHCVS 1240
Score = 44 (20.5 bits), Expect = 5.5e-10, Sum P(5) = 5.5e-10
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 677 ENETAAQTPAQEIDNLLSST-MEDSSM---PSF---SLLDEDLGEGKTAAGVEDDD 725
E E A PA++ +N SS + D+S SF SL D + + A ++ D+
Sbjct: 1506 EEEQCANKPAEQRENNESSDHVTDNSFNRSSSFLFDSLYDNSILDAMEEAAIDQDN 1561
Score = 44 (20.5 bits), Expect = 5.5e-10, Sum P(5) = 5.5e-10
Identities = 29/126 (23%), Positives = 50/126 (39%)
Query: 881 NISKTMESDSA---IQTNEHFPANQSEFCIAASDVTKDANSDAVLRDGSTISDMEFGALD 937
+++KT E + + +E F Q++ + SD+ VL + M A+
Sbjct: 1711 SLTKTKEIEKEGPEVSRSEDFVTVQAKK-VTPSDLVPPTQ---VLEPVTPRVKMTTSAIQ 1766
Query: 938 KNANDNKVCTKQNHNIVSGSCCRTFRKLNL-SPIASVAGTAEPSSSIKMLSFDISMMKKQ 996
N K ++ + NI S C + + + L + SV G + LS S+
Sbjct: 1767 SPKNVTKQRSELDPNIKS--CTQRYHQPCLRTNSTSVLGAPLADEGLTRLSQCPSLPASN 1824
Query: 997 KCSPNT 1002
CSP T
Sbjct: 1825 SCSPET 1830
Score = 40 (19.1 bits), Expect = 1.3e-09, Sum P(5) = 1.3e-09
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 774 LQLHDEL--DVPEE 785
LQLHDEL +V EE
Sbjct: 2522 LQLHDELIYEVAEE 2535
Score = 38 (18.4 bits), Expect = 1.8e-09, Sum P(4) = 1.8e-09
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 911 DVTKDANSDAVLRDGSTISDM--EFGALDKNANDNKVCTKQNHNIVSGS 957
++ D N + ++++ +F D+N D V T+ +++V S
Sbjct: 1336 NINADINHETQTEKEEMVAEIYGKFSNRDQNEGDLHVNTRVKNDLVCNS 1384
>UNIPROTKB|J9P160 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 CTD:113510 EMBL:AAEX03016730 RefSeq:XP_544959.2
Ensembl:ENSCAFT00000044378 GeneID:487837 KEGG:cfa:487837
Uniprot:J9P160
Length = 1072
Score = 179 (68.1 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 53/185 (28%), Positives = 94/185 (50%)
Query: 70 SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQER-----LREASLSCSDKQMQ 124
S LVFC T+K + A+ + + S ++K RE+++ L+ S ++
Sbjct: 551 SCLVFCPTKKNCENVAEMICRFL-----SKQYLKHREKEKHEVIKNLKNISSGNLCPILK 605
Query: 125 SYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFN 184
I +GV YH+ GL +R L+E + G + + T+TLA G+NLPA V++++ Y
Sbjct: 606 RTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAP-YVA 664
Query: 185 KEKGLYMEHDRSTILQMCGRAGRPPFNDTG-TVIIMTRRETVHLYENLLNGCEMVESQLL 243
KE +++ R+ QM GRAGR + G +++I+ ++ + E + E S L+
Sbjct: 665 KE---FLK--RNQYKQMIGRAGRAGIDSIGESILILQEKDKQQVLELISRPLENCYSHLV 719
Query: 244 SCVTE 248
T+
Sbjct: 720 QEFTK 724
Score = 58 (25.5 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTT--KVFDILMQY-SRGKSA 71
+ + + +SAT+ N+ED+ ++L + + + RPV+L K+ D + + S+ ++
Sbjct: 462 TTQIIGMSATLTNVEDLQKFLQA-----EYYTSQFRPVELKEYLKINDAIYEVDSKAENG 516
Query: 72 LVF 74
+ F
Sbjct: 517 MTF 519
Score = 49 (22.3 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADP 518
L ++ G+ AK L++ G KS LA A+P
Sbjct: 985 LMEVTGVLEGRAKQLYNAGYKSLTHLANANP 1015
Score = 38 (18.4 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 302 EVCVQKVDELSCHQ 315
EV ++ +D LS HQ
Sbjct: 1016 EVLIRTIDHLSRHQ 1029
>UNIPROTKB|E2RST3 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 OMA:SRPLENC EMBL:AAEX03016730
Ensembl:ENSCAFT00000014486 Uniprot:E2RST3
Length = 1106
Score = 179 (68.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 53/185 (28%), Positives = 94/185 (50%)
Query: 70 SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQER-----LREASLSCSDKQMQ 124
S LVFC T+K + A+ + + S ++K RE+++ L+ S ++
Sbjct: 585 SCLVFCPTKKNCENVAEMICRFL-----SKQYLKHREKEKHEVIKNLKNISSGNLCPILK 639
Query: 125 SYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFN 184
I +GV YH+ GL +R L+E + G + + T+TLA G+NLPA V++++ Y
Sbjct: 640 RTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAP-YVA 698
Query: 185 KEKGLYMEHDRSTILQMCGRAGRPPFNDTG-TVIIMTRRETVHLYENLLNGCEMVESQLL 243
KE +++ R+ QM GRAGR + G +++I+ ++ + E + E S L+
Sbjct: 699 KE---FLK--RNQYKQMIGRAGRAGIDSIGESILILQEKDKQQVLELISRPLENCYSHLV 753
Query: 244 SCVTE 248
T+
Sbjct: 754 QEFTK 758
Score = 58 (25.5 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTT--KVFDILMQY-SRGKSA 71
+ + + +SAT+ N+ED+ ++L + + + RPV+L K+ D + + S+ ++
Sbjct: 496 TTQIIGMSATLTNVEDLQKFLQA-----EYYTSQFRPVELKEYLKINDAIYEVDSKAENG 550
Query: 72 LVF 74
+ F
Sbjct: 551 MTF 553
Score = 49 (22.3 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADP 518
L ++ G+ AK L++ G KS LA A+P
Sbjct: 1019 LMEVTGVLEGRAKQLYNAGYKSLTHLANANP 1049
Score = 38 (18.4 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 302 EVCVQKVDELSCHQ 315
EV ++ +D LS HQ
Sbjct: 1050 EVLIRTIDHLSRHQ 1063
>UNIPROTKB|E9PSY5 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1560216 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI01007603 Ensembl:ENSRNOT00000031633 ArrayExpress:E9PSY5
Uniprot:E9PSY5
Length = 805
Score = 182 (69.1 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 56/204 (27%), Positives = 101/204 (49%)
Query: 47 EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR- 105
+++ P +L V +++ YS LVFC ++K + A+ L + ++ Y N +++
Sbjct: 515 KKVDPDRLVALVTEVIPNYS----CLVFCPSKKNCENVAEMLCKF-LSRDYLNHREEEKG 569
Query: 106 EQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLA 165
E + LR ++ I +GV YH+ GL +R L+E + G + + T+TLA
Sbjct: 570 ELIKSLRNVGHGKVCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLA 629
Query: 166 HGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV 225
G+NLPA V++++ N +++ R+ QM GRAGR + G I++ + +
Sbjct: 630 AGVNLPARRVILRAPYVANT----FLK--RNQYKQMIGRAGRAGIDTAGESILLLQEKDK 683
Query: 226 HLYENLLNG-CEMVESQLLSCVTE 248
L+NG E S L+ T+
Sbjct: 684 QQVLGLINGPLEDCHSHLVEEFTK 707
>UNIPROTKB|F1RVE2 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:CU467102 EMBL:CU468150 Ensembl:ENSSSCT00000010115
Uniprot:F1RVE2
Length = 1103
Score = 180 (68.4 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 57/208 (27%), Positives = 104/208 (50%)
Query: 47 EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE 106
+++ P L V +++ +S LVFC T+K + A+ + + S ++K RE
Sbjct: 562 KKLDPDHLVALVTEVIPNHS----CLVFCPTKKNCENVAEMICKIL-----SKEYLKHRE 612
Query: 107 QQER-----LREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161
+++ L+ S ++ I +GV YH+ GL +R L+E G + +L T
Sbjct: 613 KEKHELLKNLKAISGGSVCPVLKHTIPFGVAYHHSGLTNDERKLLEEAHSAGVLCLLTCT 672
Query: 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTG-TVIIMT 220
+TLA G+NLPA V++++ Y KE +++ R+ QM GRAGR + G +++I
Sbjct: 673 STLAAGVNLPAQRVILRAP-YVAKE---FLK--RNQYKQMIGRAGRAGIDSVGESILIFQ 726
Query: 221 RRETVHLYENLLNGCEMVESQLLSCVTE 248
++ + E + E S+L+ T+
Sbjct: 727 EKDKQQVLELISRPLENCYSRLVQEFTK 754
Score = 54 (24.1 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADP 518
L ++ G+ AK L++ G KS LA ADP
Sbjct: 1015 LMEVAGVLEGRAKQLYNAGYKSLAHLANADP 1045
Score = 41 (19.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 569 RLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLT--VK 626
R+S+ + H +++ GA + + H ++EF Y ++ KLT VK
Sbjct: 954 RVSEKFNMPRGHIQNLLSGAAAFSSCVLHFCEELEEFWV-YRALLVELTK---KLTYCVK 1009
Query: 627 ADLI-FEEYIGV 637
A+LI E GV
Sbjct: 1010 AELIPLMEVAGV 1021
>WB|WBGene00008502 [details] [associations]
symbol:skih-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
NextBio:899374 Uniprot:Q19103
Length = 1266
Score = 175 (66.7 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 64/225 (28%), Positives = 104/225 (46%)
Query: 51 PVKLTTKVFDILMQYSRGKSAL---VFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQ 107
P K ++ L+ Y + L VF +RK E AQ L+ +T ++
Sbjct: 542 PGKNDKNIYLNLINYMKCSDQLPMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFS 601
Query: 108 Q--ERLREASLSCSDK-QMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTL 164
Q +RL+ + M+ L G H+ G+ + ++E LF KG V++L T T
Sbjct: 602 QCVQRLKGSDKELPQVLTMRDLCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETF 661
Query: 165 AHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224
A G+N+PA VV S + + + T QM GRAGR + TGTVII+ + T
Sbjct: 662 AMGVNMPARCVVFDSIMKHDGTERRMLNPGEYT--QMAGRAGRRGLDLTGTVIIICKDST 719
Query: 225 V---HLYENLLNGCEM-VESQLLSCVTEHLTA-EIVQMTVSDITQ 264
V + +NL++G + +ES+ + L + Q+ + D+ Q
Sbjct: 720 VPQPDVLKNLISGQALRLESKFRVTYSMILNLLRVEQLKIEDMLQ 764
Score = 65 (27.9 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 14 ASVRFLAVSATIPNIEDIAEWLN-VPVQGIKRFGEEMRPVKL 54
A V+ + +SAT+PN + A+W+ + + I + RPV L
Sbjct: 428 AHVKIVMLSATVPNCVEFADWVGRIKNRKINVISTDRRPVPL 469
Score = 40 (19.1 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 971 ASVAGTAEPSSSIKMLSFDISMMKKQK--------CSPNTSTRQCCPLPLA 1013
A++ + P S + L+ + S++ K CS N + + C +PL+
Sbjct: 887 AAIGFSKLPKSELSWLTEENSLLSTSKFGTRGAAHCSTNIRSFRLCEIPLS 937
Score = 39 (18.8 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 486 YLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPK 545
+ L ++P G+V + G++S E L E + +I R+ ++K+ L +
Sbjct: 929 FRLCEIPLSGIVAVMKKCAKGVQSGEILQEYNMTQIPRFRDRE--LSENVKKLLQQITTA 986
Query: 546 VD-MKIEEIK 554
V +K EI+
Sbjct: 987 VPGLKSGEIE 996
>FB|FBgn0002899 [details] [associations]
symbol:mus301 "mutagen-sensitive 301" species:7227
"Drosophila melanogaster" [GO:0007294 "germarium-derived oocyte
fate determination" evidence=IGI;IMP] [GO:0008298 "intracellular
mRNA localization" evidence=IMP;TAS] [GO:0048477 "oogenesis"
evidence=IGI;TAS] [GO:0009949 "polarity specification of
anterior/posterior axis" evidence=IMP] [GO:0030717 "karyosome
formation" evidence=IMP] [GO:0009951 "polarity specification of
dorsal/ventral axis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0009994 "oocyte differentiation" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009949 GO:GO:0007294 EMBL:AE014296 GO:GO:0006417
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 GO:GO:0008298
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0030717 GO:GO:0016321
GO:GO:0008026 OMA:SRPLENC GO:GO:0009951 EMBL:BT011090
RefSeq:NP_648178.1 UniGene:Dm.15493 SMR:Q9VSE2 IntAct:Q9VSE2
STRING:Q9VSE2 EnsemblMetazoa:FBtr0076689 GeneID:38905
KEGG:dme:Dmel_CG7972 UCSC:CG7972-RA CTD:38905 FlyBase:FBgn0002899
InParanoid:Q9VSE2 OrthoDB:EOG4MKKXB GenomeRNAi:38905 NextBio:810944
Uniprot:Q9VSE2
Length = 1051
Score = 176 (67.0 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 55/174 (31%), Positives = 87/174 (50%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREA-SLSCS--DKQMQSYIL 128
LVFC +RK + A LS+ + + F R ++ L +A C + +
Sbjct: 512 LVFCPSRKNCENVALLLSRIVPKHKF---FEHRRSEKLDLMDALDKMCGILSPVLAKTLP 568
Query: 129 YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
YG+ YH+ GL +R IE + G V V+C T+TLA G+NLPA V+I++ Y +E
Sbjct: 569 YGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIRAP-YVGQEFL 627
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQL 242
++ QM GRAGR + G I++ + + +NLL G +M+ S +
Sbjct: 628 TLCKYK-----QMVGRAGRAGLGEAGESILIAQSK-----DNLLVG-QMLFSPM 670
Score = 58 (25.5 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 14 ASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
A+++ + +SATI N+ +I+ +LN V + RPV+L
Sbjct: 417 ANIQIVGMSATIGNLSEISSFLNADV-----YTRGFRPVEL 452
Score = 42 (19.8 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI 521
L +LP + + A+ L++ G ++ +A P +
Sbjct: 971 LMELPAVKINRARQLYAAGFQTIGDIARVRPSHL 1004
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 165 (63.1 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 53/192 (27%), Positives = 94/192 (48%)
Query: 124 QSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYF 183
+S + G+ H+GGL + LIE LF KG ++VL T T A G+NLP TV+ S +
Sbjct: 685 RSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKH 744
Query: 184 NKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL--YENLLNGCEM-VES 240
+ GL E QM GRAGR + TGTVI+M + + ++ + G ++S
Sbjct: 745 DGN-GL-RELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQS 802
Query: 241 QLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRD--RIEK 298
Q +T ++ ++++ + + I++ ++ P++ KV+ + IE
Sbjct: 803 QFR--LTYNMILNLLRIEALRVEEMIKYSFSENAKETLQ--PEHEKQIKVLQEELQTIEY 858
Query: 299 HMQEVCVQKVDE 310
E+C +++
Sbjct: 859 KSCEICDNDIEK 870
Score = 66 (28.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKLTTKVF 59
V+F+ +SAT+PN + A W+ Q I RPV L ++
Sbjct: 469 VKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIW 513
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 202 (76.2 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 79/274 (28%), Positives = 141/274 (51%)
Query: 40 QGIKRFGEEMRPVKLTTKVFDIL-MQYSRGKSALV-FCSTRKGAQEAAQQLSQTAMTYGY 97
Q I ++ ++MR K T + I+ M +SR + L+ F ++K + A + + +T
Sbjct: 479 QHINKYTKKMR--KTTYDIEKIVQMCHSRNYTPLIIFAFSKKECEVNATAMHKIDLTSDT 536
Query: 98 SNPFIKDR-EQQER-LREASLSCSDKQ-MQSYILYGVGYHNGGLCLKDRNLIEGLFLKGD 154
IK+ E R L + S Q + +L G+G H+GGL + +IE +F +
Sbjct: 537 EKEVIKELYENAIRILADDDRSLPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQESL 596
Query: 155 VQVLCTTNTLAHGINLPAHTVVIKS-TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDT 213
++VL +T T + GIN+PA TVV S T++ EK L + +QM GRAGR +D
Sbjct: 597 LKVLFSTETFSMGINMPAKTVVFTSLTKFDGLEKRLITSGE---YIQMAGRAGRRGLDDR 653
Query: 214 GTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTE-HLTAEIVQ--MTVSDITQAIEWM- 269
G VIIM +H E ++ + V++ HL ++ + + IT E+M
Sbjct: 654 GIVIIMLDTP-LHWRE----AHKLFVGEANRLVSQFHLGYNMILNLLRIEGITP--EFMI 706
Query: 270 KCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEV 303
+ S++ +MKKN +K++++ ++E+H++++
Sbjct: 707 ERSFIQYQMKKNLS----QKILAKKKVEEHIKQI 736
Score = 39 (18.8 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 852 EECTSKTLTKSTIFEHIRKKSKNFPVFNSN 881
EE TK K KN PV N N
Sbjct: 1015 EEQIENIKTKYNTMVTCLKGEKNIPVINPN 1044
Score = 37 (18.1 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 5/14 (35%), Positives = 12/14 (85%)
Query: 727 RVITEKKVFQHIRE 740
+++ +KKV +HI++
Sbjct: 722 KILAKKKVEEHIKQ 735
>UNIPROTKB|E3W980 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 GO:GO:0004386 EMBL:AC096768
HGNC:HGNC:18536 IPI:IPI00965172 ProteinModelPortal:E3W980
SMR:E3W980 Ensembl:ENST00000510985 UCSC:uc010ikb.3
ArrayExpress:E3W980 Bgee:E3W980 Uniprot:E3W980
Length = 1034
Score = 177 (67.4 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 55/208 (26%), Positives = 103/208 (49%)
Query: 47 EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE 106
++M P L V +++ YS LVFC ++K + A+ + + S ++K +E
Sbjct: 493 KKMDPDHLVALVTEVIPNYS----CLVFCPSKKNCENVAEMICKFL-----SKEYLKHKE 543
Query: 107 QQE-----RLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161
+++ L+ ++ I +GV YH+ GL +R L+E + G + + T
Sbjct: 544 KEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCT 603
Query: 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTG-TVIIMT 220
+TLA G+NLPA V++++ Y KE +++ R+ QM GRAGR + G +++I+
Sbjct: 604 STLAAGVNLPARRVILRAP-YVAKE---FLK--RNQYKQMIGRAGRAGIDTIGESILILQ 657
Query: 221 RRETVHLYENLLNGCEMVESQLLSCVTE 248
++ + E + E S L+ T+
Sbjct: 658 EKDKQQVLELITKPLENCYSHLVQEFTK 685
Score = 51 (23.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADP 518
L ++ G+ AK L+S G KS LA A+P
Sbjct: 946 LMEVTGVLEGRAKQLYSAGYKSLMHLANANP 976
>UNIPROTKB|Q8TDG4 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AF436845 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GO:GO:0008026 EMBL:AK128665
EMBL:AC096768 EMBL:BC015428 EMBL:BC095473 EMBL:AL512702
IPI:IPI00152527 IPI:IPI00647582 IPI:IPI00807650 IPI:IPI00889496
RefSeq:NP_598375.2 UniGene:Hs.480101 ProteinModelPortal:Q8TDG4
SMR:Q8TDG4 IntAct:Q8TDG4 STRING:Q8TDG4 PhosphoSite:Q8TDG4
DMDM:296434521 PaxDb:Q8TDG4 PRIDE:Q8TDG4 DNASU:113510
Ensembl:ENST00000295488 GeneID:113510 KEGG:hsa:113510
UCSC:uc003hom.3 UCSC:uc003hoo.1 UCSC:uc003hop.1 CTD:113510
GeneCards:GC04M084328 HGNC:HGNC:18536 HPA:HPA036853 MIM:606769
neXtProt:NX_Q8TDG4 PharmGKB:PA164720529 InParanoid:Q8TDG4
OMA:SRPLENC OrthoDB:EOG4THVSJ PhylomeDB:Q8TDG4 GenomeRNAi:113510
NextBio:78853 ArrayExpress:Q8TDG4 Bgee:Q8TDG4 Genevestigator:Q8TDG4
Uniprot:Q8TDG4
Length = 1101
Score = 177 (67.4 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 55/208 (26%), Positives = 103/208 (49%)
Query: 47 EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE 106
++M P L V +++ YS LVFC ++K + A+ + + S ++K +E
Sbjct: 560 KKMDPDHLVALVTEVIPNYS----CLVFCPSKKNCENVAEMICKFL-----SKEYLKHKE 610
Query: 107 QQE-----RLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161
+++ L+ ++ I +GV YH+ GL +R L+E + G + + T
Sbjct: 611 KEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCT 670
Query: 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTG-TVIIMT 220
+TLA G+NLPA V++++ Y KE +++ R+ QM GRAGR + G +++I+
Sbjct: 671 STLAAGVNLPARRVILRAP-YVAKE---FLK--RNQYKQMIGRAGRAGIDTIGESILILQ 724
Query: 221 RRETVHLYENLLNGCEMVESQLLSCVTE 248
++ + E + E S L+ T+
Sbjct: 725 EKDKQQVLELITKPLENCYSHLVQEFTK 752
Score = 51 (23.0 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADP 518
L ++ G+ AK L+S G KS LA A+P
Sbjct: 1013 LMEVTGVLEGRAKQLYSAGYKSLMHLANANP 1043
>UNIPROTKB|E1C287 [details] [associations]
symbol:E1C287 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00550000074822 EMBL:AADN02012856
IPI:IPI00587427 Ensembl:ENSGALT00000009827 OMA:HAVKDES
Uniprot:E1C287
Length = 177
Score = 108 (43.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 16 VRFLAVSATIPNIEDIAEWLN---VPVQGIKRFGEEMRPVKL 54
+RF+AVSATIPN EDIAEWL+ +P +K E+ RPVKL
Sbjct: 66 LRFVAVSATIPNAEDIAEWLSDGKMPAVCLK-VDEDQRPVKL 106
Score = 93 (37.8 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 54 LTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTA 92
L K+ ++ YS K LVFC+TRKG Q+AA LS+ A
Sbjct: 128 LNYKIASVIQAYSDQKPVLVFCATRKGVQQAASVLSKDA 166
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 170 (64.9 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 49/138 (35%), Positives = 74/138 (53%)
Query: 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL 189
G+G H+ G+ + ++E LF G V++L T T A G+N+PA TVV S + F+ GL
Sbjct: 581 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFD---GL 637
Query: 190 YMEHDR-STILQMCGRAGRPPFNDTGTVIIMTRRE---TVHLYENLLNGCEMVESQLLSC 245
M + + +QM GRAGR ++TGT IIM + ++ L +L E ++SQ +
Sbjct: 638 EMRNLKPGEYIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILR 697
Query: 246 VTEHLTA-EIVQMTVSDI 262
LT I + V DI
Sbjct: 698 YAVILTCLRIESIKVEDI 715
Score = 58 (25.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 16 VRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLT 55
V + +SAT+PN ++A+W+ + + + RPV LT
Sbjct: 400 VNIIMLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLT 440
>DICTYBASE|DDB_G0277211 [details] [associations]
symbol:DDB_G0277211 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
Length = 1378
Score = 181 (68.8 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 56/152 (36%), Positives = 78/152 (51%)
Query: 72 LVFCSTRKGAQEAAQQLSQTA-MTYGYSNPFIKDREQQE--RLREASLSCSD-KQMQSYI 127
++F ++ QE A L Q+ +T G I+ +Q RL E S QM+ +
Sbjct: 693 IIFSFSKNKCQEYAGSLGQSVNLTQGNEKSQIRVFIEQSLGRLCEDDKSLPQILQMKELL 752
Query: 128 LYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEK 187
G+G H+GGL + L+E LF K V+VL T T A G+N+PA TVV ST+ K
Sbjct: 753 ERGIGVHHGGLLPIVKELVEILFSKSLVKVLFATETFAMGVNMPAKTVVYSSTR---KHD 809
Query: 188 GL-YMEHDRSTILQMCGRAGRPPFNDTGTVII 218
G+ + + QM GRAGR + GTVII
Sbjct: 810 GITFRDLIPGEYTQMSGRAGRRGLDKVGTVII 841
Score = 50 (22.7 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKL 54
V+ + +SAT+ N + A+W+ Q I G RP+ L
Sbjct: 571 VKMVFLSATVSNPLEFAQWIGRTKQLPIYVIGTTKRPIPL 610
Score = 43 (20.2 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 406 KKRIQTREEKIFVLAN-DCLIGDPSV 430
+K+I+ +++ LA DC++G+P +
Sbjct: 907 EKQIEKLQQQQKQLAQVDCILGEPDI 932
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 152 (58.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 51/171 (29%), Positives = 88/171 (51%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREA-- 114
K+ ++M+ + + ++F ++K + A Q+S+ ++N K+ + A
Sbjct: 449 KIVKMIMERNY-QPVIIFSFSKKECETYALQMSKL----DFNNDDEKNAVETI-FNNAID 502
Query: 115 SLSCSDKQMQSYILY------GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
SLS SDKQ+ + I G+G H+ GL + +IE LF G ++ L T T + G+
Sbjct: 503 SLSESDKQLPAVINILPLLKRGIGIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGL 562
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
N+PA TV+ S + F+ E ++ +QM GRAGR ++ G VI+M
Sbjct: 563 NMPAKTVIFTSVRKFDGEGMRWISGGE--YIQMSGRAGRRGLDERGIVILM 611
Score = 72 (30.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
SV+F+ +SATIPN + A W+ + Q E RP+ L +F
Sbjct: 348 SVKFVFLSATIPNAREFAAWIAKIHKQPCHVVYTEYRPIPLQHYIF 393
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 166 (63.5 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 69/237 (29%), Positives = 106/237 (44%)
Query: 41 GIKRFGEEMRPVKLTTKVFDILMQY--SRGKSALV-FCSTRKGAQEAAQQLSQTAMTYGY 97
G K + V+ L+ Y R ++ +V F +R E A+ L+ +T
Sbjct: 545 GTKNVSQHNTTASQDRAVWQTLLNYLSQRQQTPVVAFTFSRTRCDENARSLTSLDLTTSI 604
Query: 98 SNPFIKDREQQERLREASLSCSDKQMQSYILY------GVGYHNGGLCLKDRNLIEGLFL 151
I Q+ R L D+Q+ +L G+G H+ G+ + +IE LF
Sbjct: 605 EKSEIHSFLQKSLTR---LRGGDRQLPQILLMRDLLKRGIGVHHSGILPILKEVIEMLFS 661
Query: 152 KGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL-YMEHDRSTILQMCGRAGRPPF 210
+G V+VL T T A G+N+PA TVV S + K G + +QM GRAGR
Sbjct: 662 RGLVKVLFATETFAMGVNMPARTVVFDSIR---KHDGTGFRNLLPGEYIQMAGRAGRRGL 718
Query: 211 NDTGTVIIMTRRETVH----LYENLLNGCEMVESQLLSCVTEHLTAEIVQ-MTVSDI 262
+ TGTVII+ + VH L+ +L ++ SQ T L V+ + V+D+
Sbjct: 719 DATGTVIILCKAG-VHDMGELHSMMLGKPTVLHSQFRLTYTMILNLLRVEALRVTDM 774
Score = 55 (24.4 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 16 VRFLAVSATIPNIEDIAEWLN-VPVQGIKRFGEEMRPVKL 54
V + +SAT+PN + +EW+ + + I RPV L
Sbjct: 456 VSIILLSATVPNAVEFSEWIGRIKKRHIYVISTIKRPVPL 495
Score = 49 (22.3 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 912 VTKDANSDAVLRDGSTISDMEFGALDKNAND---NKVCT---KQNHNIVSGSCCRTFRKL 965
V +SDAV R + + E G ++ A+D NKV + I G C T +KL
Sbjct: 865 VILQVSSDAVNRTFTALIICEKGN-EEAASDEQSNKVALPIYSKTLFIPEGPCSHTVQKL 923
Query: 966 NLSPIASVAGTA 977
L I+++ A
Sbjct: 924 KLQDISAITTKA 935
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 612 TVLSSNPQQGKLTVKADLIF 631
+VL S ++ L ++ D++F
Sbjct: 1223 SVLGSKMERASLAIRRDIVF 1242
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 164 (62.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 52/158 (32%), Positives = 76/158 (48%)
Query: 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSY- 126
G + +VF +RK + A L + +K + A LS D+++
Sbjct: 373 GLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAI---AQLSPEDQKLPQIL 429
Query: 127 -IL----YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQ 181
IL G+G H+ GL + IE LF +G V+VL T T + G+N+PA TVV S +
Sbjct: 430 NILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSAR 489
Query: 182 YFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
F+ Y+ +QM GRAGR +D GTVI+M
Sbjct: 490 KFDGSDNRYITSGE--YIQMAGRAGRRGKDDRGTVILM 525
Score = 56 (24.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 21 VSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVFDI 61
+SATIPN A+W+ ++ Q + + RP L ++ +
Sbjct: 268 LSATIPNARQFAQWVASIKQQPVNVVYTDYRPTPLQHWIYPV 309
>UNIPROTKB|G3MYJ7 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
Uniprot:G3MYJ7
Length = 605
Score = 152 (58.6 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 50/188 (26%), Positives = 97/188 (51%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+ T + + ++++ E + ++
Sbjct: 374 KIVKMIMERNF-QPVIIFSFSKKDCEAYALQM--TKLDFNTD----EEKKMVEEVFSNAI 426
Query: 117 SC-SDK-----QMQSYILY---GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
C SD+ Q+++ + G+G H+GGL + IE LF +G ++ L T T A G
Sbjct: 427 DCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG 486
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT-RRETVH 226
IN+PA TV+ + + F+ + ++ +QM GRAGR +D G VI+M + +
Sbjct: 487 INMPARTVLFTNARKFDGKDFRWISSGE--YIQMSGRAGRRGMDDRGIVILMVDEKMSPT 544
Query: 227 LYENLLNG 234
+ + LL G
Sbjct: 545 IGKQLLKG 552
Score = 62 (26.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+V ++ +SATIPN AEW+ ++ Q + RP L +F
Sbjct: 274 NVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIF 319
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 155 (59.6 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 50/188 (26%), Positives = 96/188 (51%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+ T + + ++++ E + ++
Sbjct: 275 KIVKMIMERNF-QPVIIFSFSKKDCEAYALQM--TKLDFNTD----EEKKMVEEVFSNAI 327
Query: 117 SC---SDKQMQS--YIL----YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
C DK++ ++L G+G H+GGL + IE LF +G ++ L T T A G
Sbjct: 328 DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG 387
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT-RRETVH 226
IN+PA TV+ + + F+ + ++ +QM GRAGR +D G VI+M + +
Sbjct: 388 INMPARTVLFTNARKFDGKDFRWISSGE--YIQMSGRAGRRGMDDRGIVILMVDEKMSPT 445
Query: 227 LYENLLNG 234
+ + LL G
Sbjct: 446 IGKQLLKG 453
Score = 62 (26.9 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+V ++ +SATIPN AEW+ ++ Q + RP L +F
Sbjct: 175 NVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIF 220
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 155 (59.6 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 50/188 (26%), Positives = 96/188 (51%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+ T + + ++++ E + ++
Sbjct: 376 KIVKMIMERNF-QPVIIFSFSKKDCEAYALQM--TKLDFNTD----EEKKMVEEVFSNAI 428
Query: 117 SC---SDKQMQS--YIL----YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
C DK++ ++L G+G H+GGL + IE LF +G ++ L T T A G
Sbjct: 429 DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG 488
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT-RRETVH 226
IN+PA TV+ + + F+ + ++ +QM GRAGR +D G VI+M + +
Sbjct: 489 INMPARTVLFTNARKFDGKDFRWISSGE--YIQMSGRAGRRGMDDRGIVILMVDEKMSPT 546
Query: 227 LYENLLNG 234
+ + LL G
Sbjct: 547 IGKQLLKG 554
Score = 62 (26.9 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+V ++ +SATIPN AEW+ ++ Q + RP L +F
Sbjct: 276 NVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIF 321
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 155 (59.6 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 50/188 (26%), Positives = 96/188 (51%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+ T + + ++++ E + ++
Sbjct: 376 KIVKMIMERNF-QPVIIFSFSKKDCEAYALQM--TKLDFNTD----EEKKMVEEVFSNAI 428
Query: 117 SC---SDKQMQS--YIL----YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
C DK++ ++L G+G H+GGL + IE LF +G ++ L T T A G
Sbjct: 429 DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG 488
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT-RRETVH 226
IN+PA TV+ + + F+ + ++ +QM GRAGR +D G VI+M + +
Sbjct: 489 INMPARTVLFTNARKFDGKDFRWISSGE--YIQMSGRAGRRGMDDRGIVILMVDEKMSPT 546
Query: 227 LYENLLNG 234
+ + LL G
Sbjct: 547 IGKQLLKG 554
Score = 62 (26.9 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+V ++ +SATIPN AEW+ ++ Q + RP L +F
Sbjct: 276 NVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIF 321
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 155 (59.6 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 50/188 (26%), Positives = 96/188 (51%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+ T + + ++++ E + ++
Sbjct: 377 KIVKMIMERNF-QPVIIFSFSKKDCEAYALQM--TKLDFNTD----EEKKMVEEVFSNAI 429
Query: 117 SC---SDKQMQS--YIL----YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
C DK++ ++L G+G H+GGL + IE LF +G ++ L T T A G
Sbjct: 430 DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG 489
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT-RRETVH 226
IN+PA TV+ + + F+ + ++ +QM GRAGR +D G VI+M + +
Sbjct: 490 INMPARTVLFTNARKFDGKDFRWISSGE--YIQMSGRAGRRGMDDRGIVILMVDEKMSPT 547
Query: 227 LYENLLNG 234
+ + LL G
Sbjct: 548 IGKQLLKG 555
Score = 62 (26.9 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+V ++ +SATIPN AEW+ ++ Q + RP L +F
Sbjct: 277 NVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIF 322
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 149 (57.5 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 49/169 (28%), Positives = 81/169 (47%)
Query: 56 TKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD--REQQERLRE 113
TK+ ++M+ + +VF +++ + A ++S + ++D R L E
Sbjct: 422 TKIIKMIMRRAY-HPVIVFNFSKRECENLALKVSTLNFNHESEQKLVEDIFRNAIMSLSE 480
Query: 114 ASLSCSDKQ-MQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPA 172
Q + + G+G H+ GL + IE LF + ++VL T T + G+N+PA
Sbjct: 481 EDQGLPQIQHLLPLLKKGIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPA 540
Query: 173 HTVVIKSTQYFN--KEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
TVV + F+ KE+ L S +QM GRAGR +D G VI+M
Sbjct: 541 KTVVFSQVKKFDGVKERPL----TPSEYIQMSGRAGRRGLDDRGIVIMM 585
Score = 68 (29.0 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 16 VRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
VR++ +SATIPN AEW+ + Q + RP L VF
Sbjct: 314 VRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYVF 358
>UNIPROTKB|D4AE49 [details] [associations]
symbol:D4AE49 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR012961 Pfam:PF00271 Pfam:PF08148 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00690000102230 InterPro:IPR025696 Pfam:PF13234
IPI:IPI00776783 PRIDE:D4AE49 Ensembl:ENSRNOT00000060695
ArrayExpress:D4AE49 Uniprot:D4AE49
Length = 764
Score = 150 (57.9 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 46/172 (26%), Positives = 89/172 (51%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+ T + + ++++ E + ++
Sbjct: 120 KIVKMIMERNF-QPVIIFSFSKKDCEAYALQM--TKLDFNTD----EEKKMVEEVFNNAI 172
Query: 117 SC---SDKQMQS--YIL----YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
C DK++ ++L G+G H+GGL + IE LF +G ++ L T T A G
Sbjct: 173 DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG 232
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
IN+PA TV+ + + ++ + ++ +QM GRAGR +D G VI+M
Sbjct: 233 INMPARTVLFTNARKYDGKDFRWISSGE--YIQMSGRAGRRGMDDRGIVILM 282
Score = 62 (26.9 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+V ++ +SATIPN AEW+ ++ Q + RP L +F
Sbjct: 20 NVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIF 65
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 152 (58.6 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 50/188 (26%), Positives = 97/188 (51%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+ T + + ++++ E + ++
Sbjct: 374 KIVKMIMERNF-QPVIIFSFSKKDCEAYALQM--TKLDFNTD----EEKKMVEEVFSNAI 426
Query: 117 SC-SDK-----QMQSYILY---GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
C SD+ Q+++ + G+G H+GGL + IE LF +G ++ L T T A G
Sbjct: 427 DCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG 486
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT-RRETVH 226
IN+PA TV+ + + F+ + ++ +QM GRAGR +D G VI+M + +
Sbjct: 487 INMPARTVLFTNARKFDGKDFRWISSGE--YIQMSGRAGRRGMDDRGIVILMVDEKMSPT 544
Query: 227 LYENLLNG 234
+ + LL G
Sbjct: 545 IGKQLLKG 552
Score = 62 (26.9 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+V ++ +SATIPN AEW+ ++ Q + RP L +F
Sbjct: 274 NVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIF 319
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 165 (63.1 bits), Expect = 8.3e-08, Sum P(3) = 8.3e-08
Identities = 63/264 (23%), Positives = 123/264 (46%)
Query: 27 NIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDIL-MQYS-RGKSALVFCSTRKGAQEA 84
N + + E L+ + + + + + VK ++ + I+ M S R +VFC ++K +
Sbjct: 328 NFKKVLEVLDHSTRQ-ENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEIN 386
Query: 85 AQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSD-KQMQSYILYGVGYHNGGLCLK 141
A Q + + + + + +L E ++M+S +L G+G H+ GL
Sbjct: 387 AHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPI 446
Query: 142 DRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQM 201
+ L+E LF +G V++L T T + G+N+PA TV+ Q F+ ++ +QM
Sbjct: 447 LKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGE--YMQM 504
Query: 202 CGRAGRPPFNDTG-TVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQ--MT 258
GRAGR + G +++I+ + L+NG ++ +L+ HL+ ++ M
Sbjct: 505 SGRAGRRGIDTKGLSIVILDQSIDEQAARCLMNG----QADVLNSAF-HLSYGMILNLMR 559
Query: 259 VSDITQAIEWMKCSYLYVRMKKNP 282
+ +I+ K Y + M+ P
Sbjct: 560 IEEISPEDILKKSFYQFQNMESLP 583
Score = 58 (25.5 bits), Expect = 8.3e-08, Sum P(3) = 8.3e-08
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 15 SVRFLAVSATIPNIEDIAEWLN 36
++RF+ +SAT+PN A W++
Sbjct: 262 AIRFIFLSATLPNALQFARWIS 283
Score = 38 (18.4 bits), Expect = 8.3e-08, Sum P(3) = 8.3e-08
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 940 ANDNKVCTKQNHNIVSGSCCRTFRKLN 966
A+ ++C + GS RTFR+L+
Sbjct: 965 ASFQEICIVSK--LYEGSIVRTFRRLD 989
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 55/187 (29%), Positives = 93/187 (49%)
Query: 42 IKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPF 101
I + GEE KL + I QY ++F ++K + A Q+S+ + S+
Sbjct: 299 IGKLGEESDIFKLVKMI--IQRQYD---PVILFSFSKKECEALAMQMSKMVLN---SDD- 349
Query: 102 IKDREQQERLREAS---LSCSDKQMQ--SYIL----YGVGYHNGGLCLKDRNLIEGLFLK 152
+++ E + ++ LS DK++ S IL G+G H+ GL + +IE LF +
Sbjct: 350 --EKDAVETIFASAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQE 407
Query: 153 GDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFND 212
G ++ L T T + G+N+PA TVV + + F+ +K ++ +QM GRAGR +
Sbjct: 408 GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGE--YIQMSGRAGRRGIDK 465
Query: 213 TGTVIIM 219
G I+M
Sbjct: 466 RGICILM 472
Score = 65 (27.9 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 17 RFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
RF+ +SAT+PN ++ A+W+ V Q + RP L VF
Sbjct: 206 RFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYVF 249
Score = 46 (21.3 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 221 RRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAI-EWMKCSYLYVRMK 279
R E L+ L + V L C E VQ DI +A+ W K S Y M+
Sbjct: 871 REELDLLFIQLQDTARRVAEVQLDCKVEIDVESFVQSFRPDIMEAVYAWAKGSKFYEVME 930
Score = 44 (20.5 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 693 LSSTMEDSSMPSFSLLDED-----LGEGKTAAGVEDDDCR 727
L T +D SFS+ D+D + K + EDDD R
Sbjct: 596 LDCTNDDEEPQSFSIEDQDTWGVIMKFNKVKSLSEDDDSR 635
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 540 LSLPPKVDMKIE 551
+ L P+VDMKI+
Sbjct: 721 IPLDPEVDMKIK 732
>UNIPROTKB|F1MAH7 [details] [associations]
symbol:F1MAH7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
Length = 1046
Score = 150 (57.9 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 46/172 (26%), Positives = 89/172 (51%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+ T + + ++++ E + ++
Sbjct: 376 KIVKMIMERNF-QPVIIFSFSKKDCEAYALQM--TKLDFNTD----EEKKMVEEVFNNAI 428
Query: 117 SC---SDKQMQS--YIL----YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
C DK++ ++L G+G H+GGL + IE LF +G ++ L T T A G
Sbjct: 429 DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG 488
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
IN+PA TV+ + + ++ + ++ +QM GRAGR +D G VI+M
Sbjct: 489 INMPARTVLFTNARKYDGKDFRWISSGE--YIQMSGRAGRRGMDDRGIVILM 538
Score = 62 (26.9 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+V ++ +SATIPN AEW+ ++ Q + RP L +F
Sbjct: 276 NVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIF 321
Score = 46 (21.3 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 548 MKIEEIKCQGQGKSKLLITLT----RLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVD 603
++++E+KC+ KL+ +T +L V T AD ++ E LF++ + +
Sbjct: 849 LQMDELKCRKPCTRKLIFKITSDEKQLKHRVSLTVHSSADELLLTEMMFNGLFND-LSSE 907
Query: 604 EFSSPYSVTVLSSNPQQ-GKLT 624
+ ++ S V N + KLT
Sbjct: 908 QATALLSCFVFQENSSEMPKLT 929
>FB|FBgn0002905 [details] [associations]
symbol:mus308 "mutagen-sensitive 308" species:7227
"Drosophila melanogaster" [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR003583 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00278 SMART:SM00482 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006200 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
GO:GO:0006303 GO:GO:0006289 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:L76559 EMBL:BT044169 PIR:T13858 RefSeq:NP_524333.1
UniGene:Dm.23677 HSSP:P00582 SMR:O18475 STRING:O18475
EnsemblMetazoa:FBtr0082662 GeneID:41571 KEGG:dme:Dmel_CG6019
UCSC:CG6019-RA CTD:41571 FlyBase:FBgn0002905 InParanoid:O18475
OrthoDB:EOG4FJ6QM GenomeRNAi:41571 NextBio:824448 Uniprot:O18475
Length = 2059
Score = 168 (64.2 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 87/397 (21%), Positives = 171/397 (43%)
Query: 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR-----------EQQERLREASL 116
G S +VFC ++ + A QL+ S + R E +++LR+
Sbjct: 471 GCSVIVFCPSKDWCENLAVQLATAIHVQIKSETVLGQRLRTNLNPRAIAEVKQQLRDIPT 530
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
D M I Y +H+ GL ++R++IE F G ++VL T+TL+ G+NLPA V+
Sbjct: 531 GL-DGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVL 589
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLL-NGC 235
I+S + K+ T QM GRAGR + G I++ + +L+ +
Sbjct: 590 IRSPLFGGKQMSSL------TYRQMIGRAGRMGKDTLGESILICNEINARMGRDLVVSEL 643
Query: 236 EMVESQLLSCVTEHLTA---EIVQMTVSDITQAIEW-MKCSYLYVRM-----KKNPQNYS 286
+ + S L + HL E++ V++ + I++ + C+ L + +K P S
Sbjct: 644 QPITSCLDMDGSTHLKRALLEVISSGVANTKEDIDFFVNCTLLSAQKAFHAKEKPPDEES 703
Query: 287 VRKVISRDRIE--KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGR--LMTKYYLKF 342
I+ D ++ + V +Q+ +E + T L P L+ L+
Sbjct: 704 DANYIN-DALDFLVEYEFVRLQRNEERETAVYVATRLGAACLASSMPPTDGLILFAELQK 762
Query: 343 DTMKYIMQTPVNCGLEDALHTVCHA-EEIAWI-------QLRRNEKKLLNVINIDKDGRL 394
+++++ ++ ++VC+ ++I W+ +L KK+ ++ + +D L
Sbjct: 763 SRRSFVLESELHAVYLVTPYSVCYQLQDIDWLLYVHMWEKLSSPMKKVGELVGV-RDAFL 821
Query: 395 RFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVH 431
+ G K++Q + LA + L+ + ++
Sbjct: 822 YKALRGQTKLDYKQMQIHKRFYIALALEELVNETPIN 858
Score = 61 (26.5 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIV 524
L ++P + A+AL GI S LA ADP +E V
Sbjct: 919 LMRIPDLSQKRARALFDAGITSLVELAGADPVELEKV 955
Score = 45 (20.9 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFG----EEMRPVKLTTKVFD 60
++ + +SAT+ N++ + WL+ + I + +EM +K+ T ++D
Sbjct: 389 IQVITMSATLENVQLLQSWLDAELY-ITNYRPVALKEM--IKVGTVIYD 434
Score = 39 (18.8 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 679 ETAAQTPAQEIDNLLSSTMEDSSMPSFSLLD 709
++ + TP +EI+ L S E + + S + D
Sbjct: 1347 QSPSPTPQREIEIDLESKNESNGVSSMEISD 1377
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 150 (57.9 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 50/188 (26%), Positives = 88/188 (46%)
Query: 42 IKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNP- 100
++ F E+ P+ L T+ + R LV S++ A++ A ++ ++
Sbjct: 234 LREFSED--PLILLTEE-----SFRRNSQTLVMISSKLDAEKTALNIASRFHEINKTDSS 286
Query: 101 ---FIKDREQQERLREASLS---CSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGD 154
+K+R + L C D+ + S + +GV YH+ GL +++R IE F + +
Sbjct: 287 LLEILKERANGLLFIKHGLERNGCKDRNVMSTLAWGVAYHHAGLTMEERECIELGFREKN 346
Query: 155 VQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTG 214
+ +L T+TLA G+NLPA V+IK+ L + R QM GRAGR G
Sbjct: 347 IVILVATSTLASGVNLPAERVLIKAQP--RGPSALTSLNYR----QMVGRAGRTGHATRG 400
Query: 215 TVIIMTRR 222
++ ++
Sbjct: 401 ETYLLIKK 408
Score = 76 (31.8 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV 58
S+L VR + +SATIP + I +WL+ G K F RP+ L +
Sbjct: 176 SALEKVRIIGMSATIPELYRIGKWLD----GAKVFEARFRPIVLQNHI 219
Score = 43 (20.2 bits), Expect = 3.1e-07, Sum P(4) = 3.1e-07
Identities = 19/87 (21%), Positives = 38/87 (43%)
Query: 646 VKES-NSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPS 704
++ES +S + C + L E+ +++ E T + T DN +S ED
Sbjct: 838 IQESCDSGLPDSCEGMEDEL---EEKENIVKMEEMTKSVTEMSLTDNTISFKSEDDLFKK 894
Query: 705 FSLLDEDLGEGKTAAGVEDDDCRVITE 731
++ED E +++D+ ++ E
Sbjct: 895 EIKVEED--EVFIKKEIDEDEEEIVEE 919
Score = 39 (18.8 bits), Expect = 3.1e-07, Sum P(4) = 3.1e-07
Identities = 37/178 (20%), Positives = 72/178 (40%)
Query: 351 TPVNCGL--EDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKR 408
TP+N + E H H I + +L + K++ ++ + + +F ++ +G+R +
Sbjct: 600 TPINVSVWQECDWH---HLFSI-FSKLPSDHKRIAKLVGVSE----KFILDQLQGRRNDK 651
Query: 409 IQTREEKIF-VLANDCLIGDPSVHDLSLTQDM--NSISTNGSRIAKCMRDYFIFRKNYKG 465
+ + F LA LI + S++++S + + T S+ A F
Sbjct: 652 LLQIHIRFFSALALFDLISEMSIYEVSHKYRIPRGCLQTLQSQSATYAAMIVAFCLRLGW 711
Query: 466 AVNSALLAKSLYQRLWDDSPYL--LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI 521
ALL + L+ L L + GI A+ LH G+ L+ D ++
Sbjct: 712 TYLKALLDGFATRLLFGVRSELSELVAIEGIDGQRARILHERGVTCLSHLSACDSSKL 769
Score = 38 (18.4 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 50/266 (18%), Positives = 106/266 (39%)
Query: 352 PVNC-GLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQ 410
P +C G+ED L E I +++ K + + ++ D + F D K K I+
Sbjct: 847 PDSCEGMEDELE---EKENI--VKMEEMTKSVTEM-SLT-DNTISFKSEDDLFK--KEIK 897
Query: 411 TREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFR--KNYKGAVN 468
E+++F+ D ++ + + T+ ++ + F+ R + +
Sbjct: 898 VEEDEVFIKKEI----DEDEEEIVEETVIECLETSLLKLKASTDEVFLRRLSQTFSPIGR 953
Query: 469 S-ALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGR 527
S ++L SL + +D P +P + +T K FE + P + G
Sbjct: 954 SRSILNNSLLEDSFD-RPVPRSSIPILNFITPK--RESPTPYFEDSFDR-P-----IPG- 1003
Query: 528 KYPFGNHIKESLLSLPPKVDM-KIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYA---- 582
P + ++S+L+ +D + E I + + +T ++S + KR A
Sbjct: 1004 SLPISSSRRKSVLTNIANLDSSRRESINSNASDNNSFDVFVTPPTKSAKEEKRRIAVKHP 1063
Query: 583 ---DMIVGAEENNMVLFHEKIRVDEF 605
++I ++ V+ H K+ ++ F
Sbjct: 1064 RVGNIIYSPLTSSPVIKHPKLEINHF 1089
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 159 (61.0 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 52/176 (29%), Positives = 84/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L+
Sbjct: 570 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLH 629
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 630 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 687
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 688 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 743
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 159 (61.0 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 52/176 (29%), Positives = 84/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L+
Sbjct: 570 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLH 629
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 630 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 687
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 688 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 743
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 159 (61.0 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 52/176 (29%), Positives = 84/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L+
Sbjct: 570 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLH 629
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 630 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 687
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 688 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 743
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 152 (58.6 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+ T + + ++++ E + ++
Sbjct: 374 KIVKMIMERNF-QPVIIFSFSKKDCEAYALQM--TKLDFNTD----EEKKMVEEVFNNAI 426
Query: 117 SC---SDKQMQS--YIL----YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
C DK++ ++L G+G H+GGL + IE LF +G ++ L T T A G
Sbjct: 427 DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG 486
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT-RRETVH 226
IN+PA TV+ + + ++ + ++ +QM GRAGR +D G VI+M + +
Sbjct: 487 INMPARTVLFTNARKYDGKDFRWISSGE--YIQMSGRAGRRGMDDRGIVILMVDEKMSPT 544
Query: 227 LYENLLNG 234
+ + LL G
Sbjct: 545 IGKQLLKG 552
Score = 62 (26.9 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+V ++ +SATIPN AEW+ ++ Q + RP L +F
Sbjct: 274 NVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIF 319
Score = 41 (19.5 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 572 QSVQSTKRHYADMIVGAEENNMVLFHEKIR 601
+ V++++ Y +++ EEN +V+++ KIR
Sbjct: 601 EKVKNSEEQYNKIVIPNEEN-VVIYY-KIR 628
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 152 (58.6 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 75/298 (25%), Positives = 131/298 (43%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+S+ ++ E + L
Sbjct: 369 KIVKMIMERNF-QPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVE--EVFNNATDC-L 424
Query: 117 SCSDKQMQS--YIL----YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINL 170
S DK++ ++L G+G H+GGL + IE LF +G ++ L T T A GIN+
Sbjct: 425 SDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINM 484
Query: 171 PAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT-RRETVHLYE 229
PA TV+ S + F+ + ++ +QM GRAGR ++ G VI M + + + +
Sbjct: 485 PARTVLFTSARKFDGKDFRWISSGE--YIQMSGRAGRRGMDERGIVIFMVDEKMSPAVGK 542
Query: 230 NLLNGCEMVESQLLSCVTEHLTAEIVQ--MTVSDITQAIEWMKCSYLYVRMKKNPQNYSV 287
LL G L S HLT +V + V +I K Y + + P
Sbjct: 543 QLLKGSA---DPLNSAF--HLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVDR 597
Query: 288 RKVISRD----RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQ------EPGRLM 335
K + + RI K V K+ + + + + F+ KP+ +PGRL+
Sbjct: 598 MKKLEEEYNAIRIPKEESVVTYYKIRQQLAK--LGKEIEEFIHKPRYCLPFLQPGRLV 653
Score = 56 (24.8 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+V + +SAT+PN AEW+ ++ Q + RP L +F
Sbjct: 264 NVHHVFLSATVPNARQFAEWICHLHKQPCHVVYTDYRPTPLQHYIF 309
>UNIPROTKB|F5H6Y7 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
Ensembl:ENST00000547296 Ensembl:ENST00000548561
Ensembl:ENST00000552010 Uniprot:F5H6Y7
Length = 880
Score = 155 (59.6 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L
Sbjct: 204 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLN 263
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 264 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 321
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 322 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 377
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 155 (59.6 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L
Sbjct: 377 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLN 436
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 437 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 494
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 495 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 550
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 155 (59.6 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L
Sbjct: 377 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLN 436
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 437 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 494
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 495 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 550
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 155 (59.6 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L
Sbjct: 412 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLN 471
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 472 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 529
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 530 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 585
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 155 (59.6 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L
Sbjct: 412 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLN 471
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 472 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 529
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 530 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 585
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 151 (58.2 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL 189
G+G H+GGL + IE LF +G ++ L T T A G+N+PA TV+ + + F+ +K
Sbjct: 467 GIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKKFR 526
Query: 190 YMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
++ +QM GRAGR +D G VI+M
Sbjct: 527 WISSGE--YIQMAGRAGRRGLDDKGIVILM 554
Score = 65 (27.9 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 15 SVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
+VR++ +SATIPN AEW+ ++ Q + RP L +F
Sbjct: 288 NVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIF 333
Score = 37 (18.1 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 943 NKVCTKQNHNIVS 955
NK+ K HNI S
Sbjct: 629 NKLTIKDEHNIAS 641
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 155 (59.6 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L
Sbjct: 529 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLR 588
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 589 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 646
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 647 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 702
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 155 (59.6 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L
Sbjct: 564 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLR 623
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 624 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 681
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 682 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 737
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 155 (59.6 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--ERLREASLSCSDKQMQSYILY 129
+VF +R E A L+ +T I Q+ RLR + S +L
Sbjct: 570 VVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLN 629
Query: 130 -GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+G H+ G+ + ++E LF +G V+VL T T A G+N+PA TVV S + +
Sbjct: 630 RGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR--KHDGS 687
Query: 189 LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR---ETVHLYENLLNGCEMVESQ 241
+ + +QM GRAGR + TGTVI++ + E L+ ++ ++SQ
Sbjct: 688 TFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQ 743
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 143 (55.4 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 34/90 (37%), Positives = 54/90 (60%)
Query: 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL 189
G+G H+ GL + +IE LF +G ++VL T T + G+N+PA TVV S + ++ ++
Sbjct: 471 GIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFR 530
Query: 190 YMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
++ +QM GRAGR +D G VI+M
Sbjct: 531 WVSGGE--YIQMSGRAGRRGLDDRGIVIMM 558
Score = 63 (27.2 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 16 VRFLAVSATIPNIEDIAEWL 35
VR++ +SATIPN + AEW+
Sbjct: 287 VRYVFLSATIPNAMEFAEWI 306
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 156 (60.0 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 50/156 (32%), Positives = 77/156 (49%)
Query: 72 LVFCSTRKGAQEAAQQLSQTAMTYGY--SNPFIKDREQQERLR-EASLSCSDKQMQSYIL 128
+VF ++K +E L+ + S + + RL+ E L +M+ +
Sbjct: 554 IVFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREMLS 613
Query: 129 YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKG 188
G+ H+GGL + ++E LF +G V+VL T T A G+N+PA +VV TQ K G
Sbjct: 614 RGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQ---KHDG 670
Query: 189 L-YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223
+ + Q GRAGR + TGTVII++R E
Sbjct: 671 RNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSE 706
Score = 54 (24.1 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 16 VRFLAVSATIPNIEDIAEWLN-VPVQGIKRFGEEMRPVKL 54
V + +SAT+PN ++ A W+ + I RPV L
Sbjct: 418 VTLILLSATVPNTKEFASWVGRTKKKNIYVISTLKRPVPL 457
Score = 43 (20.2 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 45/199 (22%), Positives = 82/199 (41%)
Query: 533 NHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLT-RLSQSVQSTKRHYADMIVGAEEN 591
++I + L L P + +I+ ++ G ++ + L R++ + ST ++ EN
Sbjct: 1007 SYISDQNLELLPDYEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELI--LEN 1064
Query: 592 NMVLF--HEKIRVDE---FSSPYSVT-VLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVL 645
++ F E I + F V +S + Q+GK + + + E+ + H +++
Sbjct: 1065 SLADFSCEETIALLSAFVFDEKTEVEPTISPHLQKGKEMILS--VAEKVNQIQEHYQVLY 1122
Query: 646 VKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSF 705
E N + P F E VC E A I +L + +E S + +
Sbjct: 1123 FNEGND-------FESQPRFGLME-VCY-----EWARGMSFNRITDL-TDVLEGSIVRTI 1168
Query: 706 SLLDEDLGEGKTAAGVEDD 724
LDE L E + AA V D
Sbjct: 1169 IRLDEVLRECRGAARVVGD 1187
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 158 (60.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 61/186 (32%), Positives = 86/186 (46%)
Query: 41 GIKRFGEEMRPVKLTTKVFDILMQYSRGKS---ALVFCSTRKGAQEAAQQLSQT----AM 93
G KRFG + P K T D L+ Y + + A+VF ++K +E A L A
Sbjct: 553 GPKRFGRD-GPKKNTW--ID-LVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAR 608
Query: 94 TYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG 153
+ FI DR +E +++ + G+ H+GGL + IE LF K
Sbjct: 609 EKSEIHMFI-DRAVGRLKKEDRELPQILKIREMLGRGIAVHHGGLLPIVKECIEILFAKS 667
Query: 154 DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDT 213
V+VL T T A G+NLP TV+ S + + + T QM GRAGR + T
Sbjct: 668 LVKVLFATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGEFT--QMSGRAGRRGLDKT 725
Query: 214 GTVIIM 219
GTVI+M
Sbjct: 726 GTVIVM 731
Score = 58 (25.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKL 54
V+++ +SAT+PN + A W+ Q I RPV L
Sbjct: 429 VKYILLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPL 468
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 770 YEQRLQLHDELDVPEETEGSIFPRATLLNPSSG 802
YEQRLQ+ + + +E + +SG
Sbjct: 1050 YEQRLQVLEAMGYIDEQHNVVLKGRVACEVNSG 1082
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 147 (56.8 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL 189
G+G H+ GL + IE LF +G ++VL T T + G+N+PA TVV S + F+
Sbjct: 475 GIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGFSQR 534
Query: 190 YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223
++ S +QM GRAGR +D G VI+M E
Sbjct: 535 WVTP--SEFVQMSGRAGRRGLDDRGIVIMMIGEE 566
Score = 61 (26.5 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 16 VRFLAVSATIPNIEDIAEWL 35
VR++ +SATIPN AEW+
Sbjct: 290 VRYVFLSATIPNAMQFAEWI 309
Score = 40 (19.1 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 297 EKHMQEVCVQKVDELSCHQMI 317
+K + + +Q++DEL C + +
Sbjct: 867 KKISEGMAIQQLDELKCRKRV 887
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 147 (56.8 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 64/254 (25%), Positives = 111/254 (43%)
Query: 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQE--RLREASLSCSD-KQMQSYI 127
A +F ++K ++ A LS I ++ RL++ + +++ +
Sbjct: 630 ACIFVFSKKRCEQNADSLSNQDFCNASEKSLIHITIEKSLTRLKQEDRTLPQILRLRELL 689
Query: 128 LYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEK 187
G+ H+GGL + ++E LF K V+VL T T A G+NLP TVV F K
Sbjct: 690 SRGIAVHHGGLLPIMKEIVEILFAKTLVKVLFATETFAMGLNLPTRTVVFSG---FRKHD 746
Query: 188 GL-YMEHDRSTILQMCGRAGRPPFNDTGTVIIMT--RRETVH---LYENLLNGCEMVESQ 241
G + + QM GRAGR ++ G VI++ + E L + +L + SQ
Sbjct: 747 GKGFRDLLPGEYTQMAGRAGRRGLDNVGYVIVVNSGKDEAPPAGALRKMILGDPTKLRSQ 806
Query: 242 LLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQ 301
+T ++ ++++ I + I K S+ + + + IS +EK +
Sbjct: 807 FR--LTYNMILNLLRVEALKIEEMI---KRSFSENATQALLPEHEKQVQISEASLEKIKR 861
Query: 302 EVC-VQKVDELSCH 314
E C + VD +CH
Sbjct: 862 EPCEICDVDLAACH 875
Score = 56 (24.8 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 16 VRFLAVSATIPNIEDIAEWLN-VPVQGIKRFGEEMRPVKL 54
V + +SAT+PN ++ A W+ + I RPV L
Sbjct: 460 VTLILLSATVPNTQEFASWVGRTKKKDIYVISTAKRPVPL 499
Score = 47 (21.6 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 25/122 (20%), Positives = 56/122 (45%)
Query: 845 DTVPSQYEECTSKTLTKSTIFEHIRKKSKNFPVFNSNISKTMESDSAIQTNEHFPANQSE 904
+ V ++YE L + +F+ +K++N P N + K E+ I+ +E Q +
Sbjct: 1142 ENVLAEYEPEEIVALLSAFVFQ---EKTENVPTLNPRLEKGKEA--IIRISEKVNDVQIQ 1196
Query: 905 FCIAASDVTKDANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQNHNIVSGSCCRTFRK 964
+ S T+D N D + ++++ + K + N++ + ++ G+ RT +
Sbjct: 1197 HQVLQS--TEDIN-DFASQPRFGLAEVVY-EWAKGMSFNRITDLTD--VMEGTIVRTITR 1250
Query: 965 LN 966
L+
Sbjct: 1251 LD 1252
Score = 40 (19.1 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 693 LSSTMEDSSMPSFSLLDEDLGEGKTAAGVEDD 724
L+ ME + + + + LDE E K AA + D
Sbjct: 1236 LTDVMEGTIVRTITRLDETCREVKNAAKLVGD 1267
>UNIPROTKB|J9P0M0 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
Length = 1708
Score = 144 (55.7 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 37/112 (33%), Positives = 58/112 (51%)
Query: 97 YSNPFIKDREQQERLRE-ASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDV 155
Y+N D E + + + + ++++ G+GYH+ L KD+ L+E LF KG +
Sbjct: 1222 YANQKAIDAETLQMVFDRVKFTRKGAELKALARRGIGYHHSSLSFKDKQLVEVLFRKGFI 1281
Query: 156 QVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGR 207
+V+ T TLA GIN+P +VV + +Y+ D QM GRAGR
Sbjct: 1282 RVVTATGTLALGINMPCKSVVFA-------QNSIYL--DALNYRQMSGRAGR 1324
Score = 61 (26.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 18 FLAVSATIPNIEDIAEWLNVPVQGIKRFGEE 48
FLA+SATI N E + EWL Q +K + ++
Sbjct: 910 FLALSATISNPEHLTEWL----QSVKSYWKQ 936
>UNIPROTKB|E2QSY2 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
Length = 1711
Score = 144 (55.7 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 37/112 (33%), Positives = 58/112 (51%)
Query: 97 YSNPFIKDREQQERLRE-ASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDV 155
Y+N D E + + + + ++++ G+GYH+ L KD+ L+E LF KG +
Sbjct: 1225 YANQKAIDAETLQMVFDRVKFTRKGAELKALARRGIGYHHSSLSFKDKQLVEVLFRKGFI 1284
Query: 156 QVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGR 207
+V+ T TLA GIN+P +VV + +Y+ D QM GRAGR
Sbjct: 1285 RVVTATGTLALGINMPCKSVVFA-------QNSIYL--DALNYRQMSGRAGR 1327
Score = 61 (26.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 18 FLAVSATIPNIEDIAEWLNVPVQGIKRFGEE 48
FLA+SATI N E + EWL Q +K + ++
Sbjct: 913 FLALSATISNPEHLTEWL----QSVKSYWKQ 939
>UNIPROTKB|F1RIW4 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0003727 GO:GO:0051607
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 OMA:QDCTYAD GO:GO:1900245 GO:GO:1900246
GeneTree:ENSGT00690000102154 EMBL:AEMK01191618 EMBL:CU469408
Ensembl:ENSSSCT00000010657 Uniprot:F1RIW4
Length = 1705
Score = 138 (53.6 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 122 QMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQ 181
++++ GVGYH+ L K++ L+E LF KG ++V+ T TLA GIN+P +VV
Sbjct: 1245 ELKALAARGVGYHHSSLNFKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFA--- 1301
Query: 182 YFNKEKGLYMEHDRSTILQMCGRAGR 207
+ +Y+ D QM GRAGR
Sbjct: 1302 ----QNSIYL--DALNYRQMSGRAGR 1321
Score = 67 (28.6 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 18 FLAVSATIPNIEDIAEWLNVPVQGIKRFGEE 48
FLA+SATI N E + EWL Q +KR+ ++
Sbjct: 908 FLALSATISNPEHLTEWL----QSVKRYWKQ 934
>UNIPROTKB|F1N993 [details] [associations]
symbol:F1N993 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
Length = 1031
Score = 157 (60.3 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
K+ ++M+ + + ++F ++K + A Q+ T + + ++++ E + ++
Sbjct: 365 KIVKMIMERNF-QPVIIFSFSKKDCEAYALQM--TKLDFNTD----EEKKMVEEVFNNAI 417
Query: 117 SC---SDKQMQS--YIL----YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
C DK++ ++L G+G H+GGL + IE LF +G ++ L T T A G
Sbjct: 418 DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG 477
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT-RRETVH 226
IN+PA TV+ S F+ + ++ +QM GRAGR +D G VI+M + +
Sbjct: 478 INMPARTVLFTSASKFDGKDFRWISSGE--YIQMSGRAGRRGMDDRGIVILMVDEKMSPT 535
Query: 227 LYENLLNG 234
+ + LL G
Sbjct: 536 IGKQLLKG 543
Score = 42 (19.8 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 298 KHMQEVCVQKVDELSCHQMIWTDEDGFL 325
+ MQE C +++ +S + DE+ +L
Sbjct: 922 RQMQE-CAKRIARVSAEAKLEIDEENYL 948
Score = 37 (18.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 469 SALLAKSLYQRLWDDSPYLLKQLPG 493
+ALL+ ++Q ++ P L +QL G
Sbjct: 895 TALLSCFVFQENSNEMPKLTEQLAG 919
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 141 (54.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 46/159 (28%), Positives = 74/159 (46%)
Query: 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSY---- 126
A+ F +R G A Q ++ + + E + R L+ SD + Y
Sbjct: 275 AITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDH-RCGDLADSDLAVLGYYEWR 333
Query: 127 --ILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFN 184
+L G+ H+ G+ R+ +E LF G V+ + T TLA GIN+PA TVV++ FN
Sbjct: 334 EGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFN 393
Query: 185 KEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223
E+ + + T Q+ GRAGR + G +++ E
Sbjct: 394 GEQHMPLTPGEYT--QLTGRAGRRGIDVEGHAVVIWHPE 430
Score = 57 (25.1 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFG-EEMRPVKL 54
VR +++SAT+ N E+ W+ V+G +E RPV L
Sbjct: 157 VRVVSLSATVSNAEEFGGWIQT-VRGDTTVVVDEHRPVPL 195
>WB|WBGene00016194 [details] [associations]
symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
Length = 1714
Score = 141 (54.7 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 38/113 (33%), Positives = 60/113 (53%)
Query: 109 ERLREASLSCSDKQMQSYILY-GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
ER+++ + + Q+ + G+GYH+ GL +R +E LF G++ VL +T+TL+ G
Sbjct: 1259 ERMQKGAKTRESTQVLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLG 1318
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220
+N+P TV+ LY QM GRAGR F+ +G VI M+
Sbjct: 1319 VNMPCKTVMF-GVDTLQLTPLLYR--------QMSGRAGRRGFDHSGNVIFMS 1362
Score = 62 (26.9 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 18 FLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL 54
FLA+SATI N + EWLN Q K G+ R V+L
Sbjct: 938 FLALSATIGNANKLHEWLNSSEQA-KSAGK--RKVEL 971
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 145 (56.1 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 40/99 (40%), Positives = 56/99 (56%)
Query: 127 ILYGVGYHNGGLCLKD-RNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNK 185
+L G+ H+ G CL ++ IE LF +G V+V+ T TLA GIN+PA T VI S K
Sbjct: 494 LLRGIAAHHAG-CLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLS--KK 550
Query: 186 EKGLYMEHDRSTILQMCGRAGRPPFNDTG-TVIIMTRRE 223
+E + + QM GRAGR ++ G TV++ T E
Sbjct: 551 AGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFE 589
Score = 54 (24.1 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQG-IKRFGEEMRPVKLT 55
V+ + +SAT+ N +++A W+ + G + RPV LT
Sbjct: 300 VQLICLSATVANPDELAGWIG-EIHGKTELVTSTRRPVPLT 339
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 139 (54.0 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 41/113 (36%), Positives = 59/113 (52%)
Query: 109 ERLREASLSCSD-KQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
E L EA K + + G+G H+ GL + +IE LF +G ++VL T T + G
Sbjct: 485 ELLPEADRELPQIKNILPLLKRGIGIHHSGLLPILKEIIEILFQEGFLKVLFATETFSIG 544
Query: 168 INLPAHTVVIKSTQYFNKEKGL-YMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
+N+PA TVV S + K G+ + +QM GRAGR +D G VI+M
Sbjct: 545 LNMPAKTVVFTSVR---KWDGVGFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 594
Score = 59 (25.8 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 16 VRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGEEMRPVKLTTKVF 59
V ++ +SATIPN + AEW+ + Q + RP L +F
Sbjct: 322 VHYVFLSATIPNAMEFAEWIVKIHNQPCHVVYTDFRPTPLQHYLF 366
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 142 (55.0 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 34/90 (37%), Positives = 53/90 (58%)
Query: 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL 189
G+G H+ GL + +IE LF +G ++VL T T + G+N+PA TVV + + F+ +
Sbjct: 519 GIGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFR 578
Query: 190 YMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
++ +QM GRAGR +D G VI+M
Sbjct: 579 WISGGE--YIQMSGRAGRRGLDDRGIVILM 606
Score = 56 (24.8 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 18 FLAVSATIPNIEDIAEWLN-VPVQGIKRFGEEMRPVKLTTKVF 59
F+ +SATIPN AEW+ + Q + RP L +F
Sbjct: 338 FVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLF 380
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 145 (56.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD--REQQERLREA 114
K+ ++M+ + + ++F +R+ ++ A +S+ ++ + L E
Sbjct: 326 KIVKMIME-RKFEPVIIFSFSRRECEQHALSMSKLDFNTDEEKEVVEQVFNNAMQCLNEE 384
Query: 115 SLSCSDKQMQSYILY-GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAH 173
S ++ +L G+ H+ GL + L+E LF +G V+ L T T A G+N+PA
Sbjct: 385 DRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK 444
Query: 174 TVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
TVV + + ++ + Y+ +QM GRAGR ++ G IIM
Sbjct: 445 TVVFTAVKKWDGDSHRYI--GSGEYIQMSGRAGRRGKDERGICIIM 488
Score = 47 (21.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 15 SVRFLAVSATIPNIEDIAEWL 35
+++ + +SAT+ N + AEW+
Sbjct: 218 AIKMVFLSATMSNATEFAEWI 238
>UNIPROTKB|F1P0I1 [details] [associations]
symbol:F1P0I1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:QDCTYAD GeneTree:ENSGT00690000102154 EMBL:AADN02016399
IPI:IPI00595626 Ensembl:ENSGALT00000015699 Uniprot:F1P0I1
Length = 1313
Score = 127 (49.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYF 183
G+GYH+G + +K+R +E LF G ++V+ T+TLA GIN+P +VV F
Sbjct: 1249 GIGYHHGAMAMKERQTVEMLFRLGYIKVVTATSTLALGINMPCRSVVFAEDSVF 1302
Score = 65 (27.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 13 LASVR--FLAVSATIPNIEDIAEWLNVPVQGIKRF 45
L ++R FLA+SATI N + + EWL Q +KR+
Sbjct: 886 LVTIRCPFLALSATISNPDHLTEWL----QSVKRY 916
>UNIPROTKB|Q8IY21 [details] [associations]
symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0009615 "response to
virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
GO:GO:1900246 Uniprot:Q8IY21
Length = 1712
Score = 132 (51.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL 189
G+GYH+ + K++ L+E LF KG ++V+ T TLA G+N+P +VV + +
Sbjct: 1260 GIGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVFA-------QNSV 1312
Query: 190 YMEHDRSTILQMCGRAGR 207
Y+ D QM GRAGR
Sbjct: 1313 YL--DALNYRQMSGRAGR 1328
Score = 60 (26.2 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 18 FLAVSATIPNIEDIAEWL 35
FLA+SATI N E + EWL
Sbjct: 914 FLALSATISNPEHLTEWL 931
>RGD|1560014 [details] [associations]
symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
"double-stranded RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
Length = 1304
Score = 129 (50.5 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL 189
G+GYH+ + K++ L+E LF KG ++V+ T TL+ GIN+P +VV + +
Sbjct: 852 GIGYHHSSMTNKEKQLVEILFRKGFIRVVTATRTLSLGINMPCKSVVFA-------QNSV 904
Query: 190 YMEHDRSTILQMCGRAGR 207
Y+ D QM GRAGR
Sbjct: 905 YL--DALNYRQMSGRAGR 920
Score = 65 (27.9 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 18 FLAVSATIPNIEDIAEWLNVPVQGIKRFGEEM 49
FLA+SATI N + + EWL Q +KR+ +++
Sbjct: 506 FLALSATISNPQHLTEWL----QSVKRYWKQI 533
Score = 41 (19.5 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 565 ITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRV 602
+T+ +S S++ + D +V A E FHEK +
Sbjct: 1266 LTIKSISVSLRELCENEEDNVVLAFEQLSKSFHEKFEL 1303
Score = 38 (18.4 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 978 EPSSSIKMLSFDISMMKKQKCSPNTSTRQC 1007
EPS+ + +SF + + + C P + +C
Sbjct: 1038 EPSNLV-FVSFLVKGLFHKLCQPTSKDSKC 1066
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 134 (52.2 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 33/105 (31%), Positives = 55/105 (52%)
Query: 103 KDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTN 162
KD + L + K++++ G+GYH+ + K++ +E LF+KG ++V+ T
Sbjct: 1217 KDSTLERVLPRVRFTRHGKELKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATE 1276
Query: 163 TLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGR 207
TLA GI++P +VV + +Y+ D QM GRAGR
Sbjct: 1277 TLALGIHMPCKSVVFA-------QDSVYL--DALNYRQMSGRAGR 1312
Score = 47 (21.6 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 18 FLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKS 70
FL +SATI N + +WL Q K+ + M ++ K D + + + S
Sbjct: 894 FLVLSATINNPNLLTKWLQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHS 946
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1034 1022 0.00080 123 3 11 22 0.40 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 127
No. of states in DFA: 623 (66 KB)
Total size of DFA: 466 KB (2220 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 94.58u 0.09s 94.67t Elapsed: 00:00:05
Total cpu time: 94.62u 0.10s 94.72t Elapsed: 00:00:05
Start: Tue May 21 15:24:02 2013 End: Tue May 21 15:24:07 2013
WARNINGS ISSUED: 1