BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001668
(1034 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=2
SV=2
Length = 1435
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 253/681 (37%), Positives = 374/681 (54%), Gaps = 78/681 (11%)
Query: 10 SSSLASVRFLAVSATIPNIEDIAEWLN---VPVQGIKRFGEEMRPVKL------------ 54
+S+ +RF+AVSATIPN EDIAEWL+ P +K E RPVKL
Sbjct: 445 TSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLK-MDESHRPVKLQKVVLGFPCSSN 503
Query: 55 ----------TTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD 104
K+ ++ YS K LVFC+TRKG Q+AA L + A FI
Sbjct: 504 QTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDA-------KFIMT 556
Query: 105 REQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTL 164
EQ++RL++ + S D +++ + G YH+ G+ L DR ++EG F GD+ VL TT+TL
Sbjct: 557 VEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTL 616
Query: 165 AHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224
A G+NLPAH VVIKST ++ GL+ E+ + ILQM GRAGRP F+ T T +IMTR T
Sbjct: 617 AMGVNLPAHLVVIKSTMHY--AGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLST 674
Query: 225 VHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQN 284
Y +L + VES L + EHL AEIV T++D+ A+EW++ + LY+R KNP +
Sbjct: 675 RDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSH 734
Query: 285 YSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDT 344
Y +++D IE +QE+C++ +++LS +I DE G KP E GRLM YY+ F+T
Sbjct: 735 YGFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKMDE-GVNFKPTEAGRLMAWYYITFET 793
Query: 345 MKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG-RLRFHINGDKG 403
+K L D + + +E IQLR NEKK LN +N D + +RF + G
Sbjct: 794 VKKFYTISGKETLSDLVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPMEG--- 850
Query: 404 KRKKRIQTREEKIFVLANDCLI----GDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIF 459
RI+TRE K+ +CLI G + D +LTQD I +GSRI + + D+
Sbjct: 851 ----RIKTREMKV-----NCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAA 901
Query: 460 R-KNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADP 518
+ K + +NS +LAK +LW++S ++ KQL IG+ + A+ + G+ SF+ + E D
Sbjct: 902 QEKKFAVLLNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDA 961
Query: 519 RRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTK 578
R +E++ R PFG IKE+++ L PK ++K+E+I +++L+T+ + TK
Sbjct: 962 RELELILNRHPPFGTQIKETVMYL-PKYELKVEQITRYSDTTAEILVTVILRNFEQLQTK 1020
Query: 579 R-----HYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVK------- 626
R HY +I+G +N +V H KI +L + K+ VK
Sbjct: 1021 RTASDSHYVTLIIGDADNQVVYLH-KIT--------DSVLLKAGSWAKKIAVKRALKSED 1071
Query: 627 --ADLIFEEYIGVDIHQKLVL 645
+LI E++G+DI QKL +
Sbjct: 1072 LSINLISSEFVGLDIQQKLTV 1092
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 238/689 (34%), Positives = 389/689 (56%), Gaps = 64/689 (9%)
Query: 16 VRFLAVSATIPNIEDIAEWL---NVPVQGIKRFGEEMRPVKL------------------ 54
+RF+AVSATIPN+EDIA+WL N P +K E RPVKL
Sbjct: 320 MRFVAVSATIPNVEDIADWLSDENSPGVCMK-MDESSRPVKLRKVVLGFPCSTKQSEFKF 378
Query: 55 ----TTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQER 110
K+ +I+ YS G+ LVFCSTRKG Q+AA L++ A F+ E ++R
Sbjct: 379 DLTLNYKIANIIQTYSDGRPTLVFCSTRKGVQQAASILTKDA-------KFVMSIEHKQR 431
Query: 111 LREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINL 170
L++ + S D +++ + YGVGYH+ G+ + DR +IE FL GD+ VL TT+TLA G+NL
Sbjct: 432 LQKCANSIKDSKLRDVLQYGVGYHHAGVDISDRKVIENSFLIGDLPVLFTTSTLAMGVNL 491
Query: 171 PAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYEN 230
PAH V++KST ++ G++ E+ + ILQM GRAGRP F+ T T +IMTR T Y +
Sbjct: 492 PAHLVIVKSTMHY--VSGMFQEYSETDILQMIGRAGRPQFDSTATAVIMTRLSTKEKYVH 549
Query: 231 LLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKV 290
+L+G + +ES L + EHL AEI T++D+ A+EW++ ++LY+R KNP Y +
Sbjct: 550 MLDGADTIESSLHKHLVEHLNAEIALHTITDVKVALEWIRSTFLYIRALKNPAYYGFSEG 609
Query: 291 ISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ 350
+ + IE +QE+C++ +++LS +I DE+ KP E G+LM YY+ F+T K
Sbjct: 610 LDKIGIEAKLQELCLKNLNDLSSLGLIKMDEE-INFKPTETGKLMALYYIAFNTAKLFHT 668
Query: 351 TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG-RLRFHINGDKGKRKKRI 409
L + + + E + +QLR NE+++LN +N DK+ +R+ + G +I
Sbjct: 669 IRGTETLAELVSLISSCSEFSDVQLRANERRVLNTLNKDKNRVTIRYPMEG-------KI 721
Query: 410 QTREEKIFVLANDCLI----GDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKN-YK 464
+T+E K+ +CLI G V D SLTQD++ I +G+R+AKC+ ++ ++N +
Sbjct: 722 KTKEMKV-----NCLIQAHLGCILVQDFSLTQDISKIFRHGTRLAKCLSEFLALQENKFS 776
Query: 465 GAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIV 524
+N+ +L K +LW++S ++ KQL IG+ A A+ + G+ +F+ + + + R +E++
Sbjct: 777 AFLNALILTKCFKSKLWENSSHISKQLEKIGVTLANAMVNAGLTTFKKIEDTNARELELI 836
Query: 525 TGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITL-----TRLSQSVQSTKR 579
R PFGN IKES+ L PK ++K +++ +++++T+ +L + +
Sbjct: 837 VNRHPPFGNQIKESVAHL-PKYEIKFQQLAKYRATTAEVVLTVLLTNFKQLQKKRTAPDS 895
Query: 580 HYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLT-VKADLIFEEYIGVD 638
H+ +++G +++N +F +KI S T + K T V +LI EY+G+D
Sbjct: 896 HFVMLVIG-DDDNQAIFKQKIMDSSLFKTGSWTRKIEIKRASKSTNVCLNLISSEYVGLD 954
Query: 639 IHQ--KLVLVKESNSNVNRKCGHKQSPLF 665
I Q + + + N + HK +F
Sbjct: 955 IQQSFNICYLGSDSFNADLVTQHKSENIF 983
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 252 bits (644), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 185/630 (29%), Positives = 312/630 (49%), Gaps = 57/630 (9%)
Query: 15 SVRFLAVSATIPNIEDIAEWL---NVPVQGIKRFGEEMRPVKLT---------------- 55
++RF+A+SAT+PNIED+A WL N I F E R V+LT
Sbjct: 294 NIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSFNCKNDFQK 353
Query: 56 -----TKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQER 110
+K+ +I+ +++ + L+FC TR A+ L + F K +
Sbjct: 354 DAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFLLNNHI-------FSKSK----- 401
Query: 111 LREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINL 170
+ + + SDK + + G+ +H+ G+ L+DR +E FL G + +LC+T+TLA G+NL
Sbjct: 402 -KRCNHNPSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNL 460
Query: 171 PAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYEN 230
PA+ V+IK T+ +N + E+ +LQM GRAGRP F G +IMT + YEN
Sbjct: 461 PAYLVIIKGTKSWNSSE--IQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYEN 518
Query: 231 LLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYS-VRK 289
L++G +++ES L + EHL AE TV I A+ W++ ++ YVR KNP Y V +
Sbjct: 519 LIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPAAYQEVNR 578
Query: 290 VISRDRIE-KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYI 348
+S +E + + C +D L ++I D K G MT++Y+ F++MK
Sbjct: 579 YVSFHSVEDSQINQFCQYLLDTLVKVKII--DISNGEYKSTAYGNAMTRHYISFESMKQF 636
Query: 349 MQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKR 408
+ L+ L+ + +EE + +++R NEKKL IN+ L++ +K K+ +
Sbjct: 637 INAKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSP--LLKYPFLTEK-KQSQI 693
Query: 409 IQTREEKIFVLANDCLIG--DPSVHDLS-----LTQDMNSISTNGSRIAKCMRDYFIFRK 461
I +K+ +L L G PS S L QD + + R+ KCM D FI +
Sbjct: 694 IDRVSQKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFRLLKCMVDTFIEKS 753
Query: 462 NYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI 521
+ N+ L +SL W+++P +L+QL IG+V+ + L GI + E + +I
Sbjct: 754 DGTSLKNTLFLLRSLNGHCWENTPMVLRQLKTIGLVSVRRLIRHGITNLEEMGHLSDTQI 813
Query: 522 EIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHY 581
E K G IK +SL P ++++ + C+ + + L +S + +S+ H
Sbjct: 814 EYYLNLKIGNGIKIKND-ISLLPCLNIRTKLENCKIENEELWLTFKVEISATFKSSIWHG 872
Query: 582 ADMIVGAE---ENNMVLFHEKIRVDEFSSP 608
+ + E + ++ +++V++ SP
Sbjct: 873 QHLSLDIETEKSSGELIDFRRLQVNKLQSP 902
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 200 bits (508), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 164/554 (29%), Positives = 257/554 (46%), Gaps = 59/554 (10%)
Query: 1 MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD 60
++A M S+ VR + +SAT+PN ED+A +L V G+ F RP+ L +
Sbjct: 703 IVARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRVEPDGVFYFDSSYRPIPLEQQYIG 762
Query: 61 I----LMQYSR--------------GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFI 102
I + Q R L+F +R+ + + L A+ + +I
Sbjct: 763 ISDRGIKQLQRCNDITFTKVSERVGDHQILIFVHSRRETAKTGKDLRDRAVEDQSIDRYI 822
Query: 103 KDREQQERLRE-ASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161
+D +E LR AS + +++ + YG+G H+ GL DR+L+E LF +QVL +T
Sbjct: 823 RDPASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLIST 882
Query: 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTR 221
TLA G+NLPAHTV+IK TQ +N EKG + E + QM GRAGRPPF+ G II+T
Sbjct: 883 ATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIITS 941
Query: 222 RETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKN 281
+ + Y +LLN +ESQ +S + ++L AEIV ++ + A+ W+ +YLY+ M +N
Sbjct: 942 QHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIRN 1001
Query: 282 PQNYSVRKVISRDRIEK------HMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLM 335
P Y IS D EK ++ L + +I D L+ E G++
Sbjct: 1002 PPLYE----ISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVA 1057
Query: 336 TKYYLKFDTMKYIMQTPVNCGLEDA--LHTVCHAEEIAWIQLRRNEK----KLLNVINID 389
+ YY+ +M I Q + + D L + E + +R EK KLL + I
Sbjct: 1058 SHYYITNSSMS-IYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERVPI- 1115
Query: 390 KDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRI 449
K+ I+ KI VL I + + +L DM I+ + SRI
Sbjct: 1116 --------------PIKENIEEPSSKINVLLQ-TYISNLKLDGFALVVDMFYIAQSASRI 1160
Query: 450 AKCMRDYFIFRKNYKGAVNSAL-LAKSLYQRLW-DDSPYLLKQLPGIGMVTAKALHSMGI 507
+ + + + +K + L LAK + ++W SP L+Q I L GI
Sbjct: 1161 TRALFE-IVLKKGWAQLAKKILNLAKMIDSKMWSSQSP--LRQFHKISPKVLNQLERRGI 1217
Query: 508 KSFETLAEADPRRI 521
E L E + +++
Sbjct: 1218 -PIEDLYEYNSQQL 1230
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 131/551 (23%), Positives = 247/551 (44%), Gaps = 70/551 (12%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-------FDILM---- 63
++R +A+S++I N D+ W+ Q F +RP+ + ++ F+ M
Sbjct: 1556 ALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVEYQIQGFEFPHFNARMLAMT 1615
Query: 64 -------QYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
++ + ++VF TRK ++ A + ++ ++ L + L
Sbjct: 1616 KPTVYEVAKNKNQQSIVFVPTRKLSRSLAADIIANVSSF------------EDTLTKPYL 1663
Query: 117 SCSDKQMQSYI------------LYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTL 164
C + + Y+ GV +++ GL ++R ++E LF G ++VL T+++
Sbjct: 1664 VCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSV 1723
Query: 165 AHGI-NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPP-----FNDTGTVII 218
A + N+ A VVI TQ + + Y+++ + ILQM GRAG+ N V++
Sbjct: 1724 AWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVLL 1783
Query: 219 MTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRM 278
+ Y+ LN VES L C+ + +EIV T++ A++++ ++LY R+
Sbjct: 1784 LCHAPKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLTWTFLYRRL 1843
Query: 279 KKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKY 338
+NP Y++ V S + +H+ E+ + EL I +D + P G + + Y
Sbjct: 1844 NQNPNYYNLSGV-SHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPLNLGIIASYY 1902
Query: 339 YLKFDTMKY----IMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRL 394
YLK+ T++ + T G+ D + +A E + +R E ++L +L
Sbjct: 1903 YLKYQTIELFGSSLKSTTRRRGIMD---IISNAPEFNSLPIRHREDQIL--------MKL 1951
Query: 395 RFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMR 454
H+ + K Q K+ VL C S+ L QD I N +R+ + +
Sbjct: 1952 ASHL--PQKIDKPNYQEISTKVNVLLQ-CHFSRESI-SADLYQDQKFILENATRLLQAIV 2007
Query: 455 DYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKS-FETL 513
D + A+ + L++ + Q +W DS + KQLP + A+ S GI+S F+ +
Sbjct: 2008 DVISSNSWLQPAIAAMELSQMITQAMW-DSDSVFKQLPHMNKRRIDAITSQGIESVFDLM 2066
Query: 514 AEADPRRIEIV 524
+ D RI+++
Sbjct: 2067 SLDDNSRIQLL 2077
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/501 (29%), Positives = 243/501 (48%), Gaps = 46/501 (9%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL---------TTKVF- 59
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L T KV
Sbjct: 646 STQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQ 705
Query: 60 ----------DILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK----DR 105
++L Q G +VF R A L + A G+ F+ D
Sbjct: 706 LNHMDEVCYENVLKQIMAGHQVMVFVHARNATVRTAMALREKAKNNGHICHFLSPQGSDY 765
Query: 106 EQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLA 165
Q E+ + S +KQ++ G H+ G+ +DR+L+E LF G ++VL T TLA
Sbjct: 766 GQAEKQVQRS---RNKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLA 822
Query: 166 HGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV 225
G+NLPAH VVIK TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + +
Sbjct: 823 WGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKL 882
Query: 226 HLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNY 285
Y LL +ESQ L + ++L AEI TV+++ +A++W+ +YLYVRM+ NP Y
Sbjct: 883 SHYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVY 942
Query: 286 SV-RKVISRD-RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFD 343
+ K D +EKH +++ ++ +L +MI +E + GR + YY+K++
Sbjct: 943 GISHKAYQMDPGLEKHREQLVIEVGRKLDKARMIRFEERTGFFSSTDLGRTASHYYIKYN 1002
Query: 344 TMKYIMQTPVNCGLE-DALHTVCHAEEIAWIQLRRNE-KKLLNVINIDKDGRLRFHINGD 401
T++ + E D L V AEE I++R E ++L ++N + + +
Sbjct: 1003 TIETFNELFDAHKTEGDILAIVSKAEEFEQIKVREEEIEELDTLLNDFCELPAPGGVENN 1062
Query: 402 KGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRK 461
GK +QT I + SL D ++ N +RI + + + RK
Sbjct: 1063 YGKINILLQT------------YISRGELDSFSLISDSAYVAQNAARIVRALFE-IALRK 1109
Query: 462 NYKGAVNSAL-LAKSLYQRLW 481
+ L L+K + +RLW
Sbjct: 1110 RWPAMTYRLLNLSKVIDKRLW 1130
Score = 186 bits (473), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/395 (28%), Positives = 198/395 (50%), Gaps = 23/395 (5%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV--------- 58
+ S + VR + +S + N D+A+WLN+ G+ F +RPV L +
Sbjct: 1485 ISSHTEKPVRVVGLSTALANARDLADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQHYC 1544
Query: 59 ----------FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ 108
F + +S K L+F S+R+ + + L T ++K E++
Sbjct: 1545 PRMARMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQWLKMDERE 1604
Query: 109 ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
+ + + D ++ + +G+G H+ GL +DR +E LF+ +QVL T+TLA G+
Sbjct: 1605 --MNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGV 1662
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228
N PAH V++K T+Y++ + Y+++ + +LQM GRAGRP F+D G +I+ Y
Sbjct: 1663 NFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1722
Query: 229 ENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVR 288
+ L VES LL + +HL AEI T++ A++++ +Y + R+ NP Y++
Sbjct: 1723 KKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYFFRRLIMNPTYYNLD 1782
Query: 289 KVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYI 348
V S D + K++ + + + +L C I ED ++P GR+ + YYLK T+
Sbjct: 1783 NV-SHDTMNKYLSSLVEKSLFDLECSYCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMF 1841
Query: 349 M-QTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKL 382
Q +E+ L + +A+E + +R NE ++
Sbjct: 1842 KDQLKPESSVEELLLILTNADEYTDLPVRHNEDQM 1876
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/397 (30%), Positives = 214/397 (53%), Gaps = 35/397 (8%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDI-------LMQ---- 64
+R + +SAT+PN +D+A ++ P G F RPV LT + +M+
Sbjct: 648 IRIVGLSATLPNYKDVARFIRAPASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMN 707
Query: 65 ---YSR-------GKSALVFCSTRKGAQEAAQQLSQTAMT--YGYSN--PFIKDREQQER 110
Y R G ++F +RK ++A+ LS A + +SN P +++ E+
Sbjct: 708 QLCYERLEKSLKEGHQVMIFVHSRKDTVKSAEILSDMAKEKHFRFSNEEPSFGAKKEFEK 767
Query: 111 LREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINL 170
++ K+++S +G+ H+ GL DRN++E F G ++VL T TLA G+NL
Sbjct: 768 VKS-------KEIRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNL 820
Query: 171 PAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYEN 230
PAHTV+IK TQ +N + G +M+ S ++Q+ GRAGRP F+ +G ++T ++ + Y +
Sbjct: 821 PAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLS 880
Query: 231 LLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RK 289
L++ +ES+ ++ + +HL AEIV TVS++ +A+ W+ +YL++RM +NP Y +
Sbjct: 881 LMSSSMPIESKFITNLEDHLNAEIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLVYGIPSS 940
Query: 290 VISRD-RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYI 348
S+D ++E+ +E+ ++ +L +M DE L E GR+ + YY+K +++
Sbjct: 941 QRSKDPQLEEFKREIIIRAAKKLEQCKMTRFDEQSENLGMTELGRIASHYYIKHPSIETF 1000
Query: 349 MQTPVN-CGLEDALHTVCHAEEIAWIQLRRNEKKLLN 384
+ + G + L+ + ++ E I LR E L+
Sbjct: 1001 NEMLNDQLGQDQVLNILSNSSEFENITLREEESTELD 1037
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 129/523 (24%), Positives = 235/523 (44%), Gaps = 63/523 (12%)
Query: 14 ASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV--------------- 58
++R + +S + N D++EW+ + G+ F RPV + +
Sbjct: 1482 VNIRVVGLSTAMANAIDLSEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQGKNYCPRMQTM 1541
Query: 59 ----FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLR-- 112
F + YS K L+F S+R+ + A L ++Y + D + + ++
Sbjct: 1542 NKPSFAAIATYSPKKPVLIFVSSRRQTRLTALDL----ISY-----LVVDNDPLQWIQKG 1592
Query: 113 ---EASLS-CSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
E +L+ D+ ++ + +G+G H+ GL DR ++E LF + +Q+L +T+TLA G+
Sbjct: 1593 FDIEPTLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGV 1652
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228
NLPAH V+IK T+YF+ + Y++ + +LQM GRAGRP F+ G ++M Y
Sbjct: 1653 NLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFY 1712
Query: 229 ENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVR 288
+ L VES L + +HL AEIV T+ AI ++ ++ + R+ +P Y +
Sbjct: 1713 KKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYYGLE 1772
Query: 289 KVISRDRIEKHMQEVC---VQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTM 345
S + + +++ ++ + +++ SC ++ DE + P G++ + YYL + T+
Sbjct: 1773 DN-SVEAVNQYLSDLLDSTLADLEQSSCIEINEYDE----IIPMSMGKIASFYYLNYKTV 1827
Query: 346 K-YIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGK 404
+ + + ++ L + A E + +R NE+ ++N + + L I +
Sbjct: 1828 QNFSDNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEE----ILNQELNENLPIKIGNYEDS 1883
Query: 405 RKK---RIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRK 461
K +Q ++ + D T D S G RI + M D
Sbjct: 1884 HTKVHLLLQAHFQRCPLPITD------------FTTDTKSALDQGIRILQAMIDVSFEYG 1931
Query: 462 NYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHS 504
+ A+ L + L Q WD L+ LP I A L S
Sbjct: 1932 YFATAIQVIRLLQMLVQGRWDYDSSLMT-LPHINKDFADFLSS 1973
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 135/489 (27%), Positives = 234/489 (47%), Gaps = 37/489 (7%)
Query: 17 RFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTK------------------- 57
R + +SAT+PN +D+A +L V + + F RPV L +
Sbjct: 641 RLVGLSATLPNYQDVATFLRVKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEV 700
Query: 58 VFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD-REQQERLREASL 116
V+D +M+++ LVF +RK + A+ + + + F+++ E LR +
Sbjct: 701 VYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAE 760
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
+ ++ + YG H+ G+ DR L+E LF +QVL +T TLA G+NLPAHTV+
Sbjct: 761 QAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVI 820
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCE 236
IK TQ +N EKG + E I+QM GRAGRP ++D G I++T + Y +L+N
Sbjct: 821 IKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQL 880
Query: 237 MVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDR- 295
VESQ++S +T+ L AE+V TVS +++A W+ ++L+VRM KNP Y + +R
Sbjct: 881 PVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQARADP 940
Query: 296 -IEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPV- 353
+E+ ++ L +I D+ +++ E GR+ + +Y +++M+ + V
Sbjct: 941 LLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVE 1000
Query: 354 NCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTRE 413
C D + E + +R EK L + + + + N D+ K + +
Sbjct: 1001 TCSDIDLFRIFSMSSEFKLLSVRDEEK--LELQKMAEHAPIPIKENLDEASAKTNVLLQ- 1057
Query: 414 EKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSAL-L 472
I + +L DM ++ + R+ + + + ++R + G L L
Sbjct: 1058 ---------AYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWR-GWAGLAQKVLTL 1107
Query: 473 AKSLYQRLW 481
K + QR W
Sbjct: 1108 CKMVTQRQW 1116
Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 155/696 (22%), Positives = 281/696 (40%), Gaps = 69/696 (9%)
Query: 10 SSSLAS-VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV--FDILMQYS 66
SS L S VR +A+S+++ N D+ WL F RPV L ++ F++ S
Sbjct: 1472 SSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSHNAS 1531
Query: 67 R--------------------GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE 106
R K ALVF R+ + A L A+ G F++ E
Sbjct: 1532 RFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAE 1591
Query: 107 QQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAH 166
+ + D+ ++ + GVG+ + G KD ++++ LF +QV + +
Sbjct: 1592 HDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCY 1651
Query: 167 GINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVH 226
I + A+ VV+ TQ++N + +Y ++ + +L M G A RP + ++M +
Sbjct: 1652 QIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRA 1711
Query: 227 LYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYS 286
Y+ L VES L C+ +H AEIV T+ + AI+++ + LY RM +NP Y+
Sbjct: 1712 YYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYN 1771
Query: 287 VRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK 346
++ R + + E+ + +L + I +D G + + YY+ + T++
Sbjct: 1772 LQGTTHR-HLSDALSELVELTLKDLENSKCIAV-KDEMDTVSLNLGMIASYYYISYQTIE 1829
Query: 347 -YIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKG-K 404
+ M + + + E + +R E +L + G+L+ D K
Sbjct: 1830 LFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVK 1889
Query: 405 RKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYK 464
I ++ + A L +D I R+ + D
Sbjct: 1890 VNLLIHAHLSRVKLTA-------------ELNKDTELIVLRACRLVQACVDVLSSNGWLS 1936
Query: 465 GAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRRIEI 523
A+++ L++ L Q ++ + PY LKQLP + + + S FE L + R +I
Sbjct: 1937 PAIHAMELSQMLTQAMYSNEPY-LKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDI 1995
Query: 524 VT--GRKYP----FGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTR------LS 571
+ G + F NH +V ++E L ++L R L+
Sbjct: 1996 LQMEGAELADVARFCNHYPSI------EVATELENDVVTSNDNLMLAVSLERDNDIDGLA 2049
Query: 572 QSV------QSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTV 625
V Q K +++G E+N +L +++ ++E S SV + + P+ G
Sbjct: 2050 PPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINEKS---SVQLDFAAPRPGHHKF 2106
Query: 626 KADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQ 661
K I + Y+G D + E NRK H++
Sbjct: 2107 KLFFISDSYLGADQEFDVAFKVEEPGRSNRKRKHEK 2142
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 146/494 (29%), Positives = 232/494 (46%), Gaps = 44/494 (8%)
Query: 16 VRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTK----------------- 57
VR + +SAT+PN +D+A +L V P +G+ F RPV L +
Sbjct: 646 VRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKALKRFQVMN 705
Query: 58 --VFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD-REQQERLREA 114
V++ M+++ LVF +RK + A+ + + F+K+ E LR
Sbjct: 706 EIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLRTE 765
Query: 115 SLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHT 174
+ + +++ + YG H+ G+ DR L+E LF +QVL +T TLA G+NLPAHT
Sbjct: 766 AEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT 825
Query: 175 VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNG 234
V+IK TQ +N EKG ++E +LQM GRAGRP ++ G I++T + Y +LLN
Sbjct: 826 VIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQ 885
Query: 235 CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV-RKVISR 293
+ESQ +S + + L AEIV TV + A+ W+ +YLY+RM +NP Y V I
Sbjct: 886 QLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKA 945
Query: 294 D-RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTP 352
D +E+H ++ L +I D + + GR+ + YYL +TM Q
Sbjct: 946 DPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETMLTYNQLL 1005
Query: 353 VNCGLEDALHTVCH-AEEIAWIQLRRNEK----KLLNVINIDKDGRLRFHINGDKGKRKK 407
E L V + E I +R EK KL+ + I K+
Sbjct: 1006 KQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPI---------------PIKE 1050
Query: 408 RIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAV 467
I+ K+ VL I + +L DM I+ + +R+ + + + + R + A
Sbjct: 1051 SIEEHSAKVNVLLQ-AYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLAD 1109
Query: 468 NSALLAKSLYQRLW 481
+ L K + +R+W
Sbjct: 1110 KTLTLCKMIDRRMW 1123
Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 125/503 (24%), Positives = 224/503 (44%), Gaps = 44/503 (8%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL-------------------TT 56
+R +A+SA++ + D+A+WL F +RP+ L +
Sbjct: 1484 IRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHNATRIATMSK 1543
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
V++ +++YS K +VF S+RK A+ A + A + N F E E ++
Sbjct: 1544 PVYNAILKYSAHKPVIVFVSSRKQARLTAIDVLTYAASDLQPNRFFHAEE--EDIKPFLE 1601
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
+DK ++ + GV Y + GL D L+E LF G VQV + L G+++ AH V+
Sbjct: 1602 RMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWGMSISAHLVI 1661
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCE 236
I TQ++N + Y ++ + +LQM GRA RP + ++M + ++ +N
Sbjct: 1662 IMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPL 1721
Query: 237 MVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRI 296
+ES L + +H AE+V T+ + A++++ ++LY R+ +NP Y+++ V R +
Sbjct: 1722 PIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHR-HL 1780
Query: 297 EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNC 355
H+ E+ + +L + I ++D L P G + YY+ + T++ + +
Sbjct: 1781 SDHLSELVENTLSDLEQSKCISVEDDMDTL-PLNLGMIAAYYYINYTTIELFSLSLNSKT 1839
Query: 356 GLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKK----RIQT 411
+ L + A E + +R +E+++L ++ RL + G K I+T
Sbjct: 1840 KVRGLLEIISSAAEYEDVVVRHHEEQVLRTLS----QRLPNKLTGPNETAPKFNDPHIKT 1895
Query: 412 REEKIFVLANDCLIGDPSVHDLS--LTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNS 469
N L S L L D I + R+ + D AV +
Sbjct: 1896 ---------NLLLQAHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAA 1946
Query: 470 ALLAKSLYQRLWDDSPYLLKQLP 492
LA+ + Q +W Y LKQLP
Sbjct: 1947 MELAQMVTQAMWSKDSY-LKQLP 1968
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 149/521 (28%), Positives = 244/521 (46%), Gaps = 64/521 (12%)
Query: 9 KSSSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTKVFDI------ 61
+ +L VR + +SAT+PN D+A +L+V P +G+ F RP L + I
Sbjct: 678 QEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPF 737
Query: 62 -------------LMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK-DREQ 107
+MQ++ L+F +RK + A+ + A+ ++ D
Sbjct: 738 KRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRDKALEEETIGHLLRSDAAS 797
Query: 108 QERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
+E LR + S SD+ ++ + YG H+ G+ +DR E LF G +QVL +T TLA G
Sbjct: 798 REILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWG 857
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227
+NLPAHTV+IK TQ ++ EKG++ E +LQM GRAGRP F+ G II+T +
Sbjct: 858 VNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQY 917
Query: 228 YENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV 287
Y +L+N +ESQ + + + L AE+ TV I ++W+ +YLYVRM ++P YSV
Sbjct: 918 YLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSV 977
Query: 288 RKVISRDR--IEK-----HMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYL 340
D+ ++K H + ++K C +++ + G L E G++ YY+
Sbjct: 978 GPEYDDDKYLVQKRADLLHSAAILLEK-----CKLLVYNRQSG-TLTATELGKVAASYYV 1031
Query: 341 KFDTM----KYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEK----KLLNVINIDKDG 392
++M + +MQT + ++E I +R EK KLL + I
Sbjct: 1032 THNSMAIYNRLLMQT---TSFIELFRVFSFSDEFKHIPVREEEKVELAKLLERVPIP--- 1085
Query: 393 RLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKC 452
+R ++ K +Q+ I + +L DM ++ + RI +
Sbjct: 1086 -IRERLDEPAAKINALLQS------------YISRQRLDGFALVADMVYVTQSAGRIMRA 1132
Query: 453 MRDYFIFRKNYKGAVNSALLAKSLYQRLWDD-SPYLLKQLP 492
+ + + R A S K + +RLW SP L+Q P
Sbjct: 1133 IFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSP--LRQFP 1171
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 122/542 (22%), Positives = 233/542 (42%), Gaps = 62/542 (11%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-------FDILMQ--- 64
++R + +S ++ N D+ EWL Q I F + RP LT + F LM
Sbjct: 1522 NIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSFSITHFPSLMLAMS 1581
Query: 65 ----------YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERL--- 111
S+ KS +VF RK A++ A L +M ++ E L
Sbjct: 1582 KPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMA-----------DEDEYLFSL 1630
Query: 112 --REASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGIN 169
EA D +Q + +G+ Y + D+N+++ L+ G ++VL + + + +
Sbjct: 1631 MENEAFNKVEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLK 1690
Query: 170 LPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYE 229
++ V++ TQY++ ++ Y+++ S +LQM G ++ VI+MT Y+
Sbjct: 1691 AKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYK 1750
Query: 230 NLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRK 289
LN +ES L + + +EI T+ A++W+ SY+Y R+ NP Y ++
Sbjct: 1751 KFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGLQD 1810
Query: 290 VISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YI 348
I+ + + + + ++ +++LS ++I D++ + + Y + + TM+ +
Sbjct: 1811 -ITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTFA 1869
Query: 349 MQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKR 408
+ ++ L V A E + +R+ E +L I+ RL D +
Sbjct: 1870 LSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSFI 1929
Query: 409 IQTREEKIFVLANDCLIGDP----SVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYK 464
+ F L +I VH+L L ++++S+ G IA C+R
Sbjct: 1930 LLAAHFSRFELPPGLVIDQKFILTRVHNL-LGACVDTLSSEGHLIA-CIR---------- 1977
Query: 465 GAVNSALLAKSLYQRLWD-DSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRRIE 522
+++ + Q LWD DSP LKQ+P + + G+ F+ + D +R E
Sbjct: 1978 ----PMEMSQMVTQALWDRDSP--LKQIPYFDDALIERCNKEGVHDVFDIIDLDDEKRTE 2031
Query: 523 IV 524
++
Sbjct: 2032 LL 2033
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 152/575 (26%), Positives = 284/575 (49%), Gaps = 54/575 (9%)
Query: 1 MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVP-VQGIKRFGEEMRP-------- 51
++A + +S +R + +SAT+PN D+A++L V +G+ F RP
Sbjct: 437 LVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFI 496
Query: 52 -VKLTTKV---------FD-ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNP 100
K + K+ FD +L G ++F +RK +A++L + G ++
Sbjct: 497 GAKGSPKIVNSNIDEACFDKVLKLIQEGHQVMIFVHSRKETINSAKKLREQFFHEGEAD- 555
Query: 101 FIKDREQQERLREASLSCS---DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQV 157
+ D Q E+ A S +K+++ Y +G HN G+ DR+L E LF G +++
Sbjct: 556 -LLDNSQHEKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKI 614
Query: 158 LCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI 217
LC T TLA G+NLPA+ V+IK TQ ++ +KG +++ +LQ+ GRAGRP F +
Sbjct: 615 LCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAY 674
Query: 218 IMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVR 277
I+T + + Y +++ +ES+ + ++L AE+ TV++I +A+ W+ +YLY+R
Sbjct: 675 IITTHDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIR 734
Query: 278 MKKNPQNYSVR--KVISRDRIEKHMQEVCVQKVDELSCHQMI-WTDEDGFLLKPQEPGRL 334
M++NP Y + +++ + +E+ L+ +QMI + ++G+L+ P++ GR+
Sbjct: 735 MRRNPLVYGIAYDELVEDPLLGSKRRELVSVAAGRLADNQMIVYNKKNGYLI-PKDLGRI 793
Query: 335 MTKYYLKF---DTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNE-KKLLNVINIDK 390
+ YY+ + T+ ++++ ++ D + + E + I+ R NE ++L +++
Sbjct: 794 ASNYYINYQTVSTLNNLLKSKMSEA--DIIALLSQCSEFSQIKSRENEHRELESLMENSS 851
Query: 391 DGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIA 450
+LR I+ GK +Q+ I V D +LT D N ++ N RI
Sbjct: 852 PCQLRDSISNTSGKVNVILQS------------YISRAHVEDFTLTSDTNYVAQNAGRIT 899
Query: 451 KCMRDYFIFRKNYKGAVNSALLAKSLYQRLWD-DSPYLLKQLPGIGMVTAKALHSMGIKS 509
+ + + + R + A L KS+ +R W + P L LP + K + G S
Sbjct: 900 RALFEIAMSR-TWASAFTILSLNKSIDRRQWSFEHPLLQFDLP--HDLAVKVENQCGSLS 956
Query: 510 FETLAEADPRRI-EIVTGRKYPFGNHIKESLLSLP 543
E L++ + +++ RK G +K+ + LP
Sbjct: 957 LEELSDMSTGELGDLIHNRK--MGPTVKKFISKLP 989
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 198/402 (49%), Gaps = 31/402 (7%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV----------------- 58
VR L +S + N D+A WLN+ G+ F +RPV L +
Sbjct: 1292 VRVLGLSTAVANANDLANWLNIR-DGLFNFRHSVRPVPLEIYIDGFPGRAYCPRMMSMNK 1350
Query: 59 --FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
F + +S + L+F S+R+ + A+ L A NP +E L
Sbjct: 1351 PAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDL--IAFCGLEDNPRRFLYMDEEELEMIVS 1408
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
DK ++ + +G+ H+ GL DR + E LF+ VQ+L T+TLA G+N PAH V+
Sbjct: 1409 EVEDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVI 1468
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCE 236
+K T+Y++ + G Y + D + +LQM GRAGRP F+++G I + Y++ L+
Sbjct: 1469 VKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFYKHFLHSGF 1528
Query: 237 MVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRI 296
VES L + HL AEI T+ I A++++ C+Y Y R+ +NP Y + I
Sbjct: 1529 PVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYYGADGD-DQKSI 1587
Query: 297 EKHMQEVCVQKVDELSCHQMIW-TDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVN 354
+ ++ ++ V +EL I+ +E+ + P GR+++ YYL T++ ++ + N
Sbjct: 1588 DTYLSKLVVTAFNELEKSACIYRVNEETY--APTTLGRIVSYYYLFHTTIRNFVQKITEN 1645
Query: 355 CGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRF 396
+ AL + A E + +R NE ++INI+ + L++
Sbjct: 1646 AEFDLALQLLAEASEFDDLAIRHNE----DLINIEINKSLKY 1683
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 146/502 (29%), Positives = 233/502 (46%), Gaps = 48/502 (9%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTKVF---------- 59
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L
Sbjct: 637 STQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCANKMQQ 696
Query: 60 ----------DILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQE 109
++L Q G +VF R A L + A G+ F +
Sbjct: 697 LNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGHDY 756
Query: 110 RLREASLSCS-DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
L E + S +KQ++ G H+ G+ +DRNL+E LF G ++VL T TLA G+
Sbjct: 757 VLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGV 816
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228
NLPAH V+IK TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + + Y
Sbjct: 817 NLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHY 876
Query: 229 ENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV- 287
LL +ESQ L + ++L AEI TV+++ +A++W+ +YLYVRM+ NP Y +
Sbjct: 877 LTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYGIS 936
Query: 288 RKVISRD-RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK 346
K D + KH +++ ++ +L QMI +E + GR + YY+K++T++
Sbjct: 937 HKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIE 996
Query: 347 YIMQTPVNCGLE-DALHTVCHAEEIAWIQLRRNEKK-----LLNVINIDKDGRLRFHING 400
+ E D V AEE I++R E + L N + G +
Sbjct: 997 TFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGG----VEN 1052
Query: 401 DKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFR 460
GK +QT I + SL D ++ N +RI + + + R
Sbjct: 1053 SYGKINILLQT------------YISRGEMDSFSLISDSAYVAQNAARIVRALFE-IALR 1099
Query: 461 KNYKGAVNSAL-LAKSLYQRLW 481
K + L L+K + +RLW
Sbjct: 1100 KRWPTMTYRLLNLSKVIDKRLW 1121
Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 191/387 (49%), Gaps = 23/387 (5%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV----------------- 58
VR + +S + N D+A+WLN+ G+ F +RPV L +
Sbjct: 1484 VRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNK 1543
Query: 59 --FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
F + +S K L+F S+R+ + A +L T ++ E++ +
Sbjct: 1544 PAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDERE--MENIIA 1601
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
+ D ++ + +G+G H+ GL +DR +E LF+ VQVL T+TLA G+N PAH V+
Sbjct: 1602 TVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVI 1661
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCE 236
IK T+Y++ + Y++ + +LQM GRAGRP F+D G +I+ Y+ L
Sbjct: 1662 IKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPF 1721
Query: 237 MVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRI 296
VES LL +++HL AEI T++ A++++ +Y + R+ NP Y++ V S D +
Sbjct: 1722 PVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDV-SHDSV 1780
Query: 297 EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIM-QTPVNC 355
K + + + + EL I ED ++P GR+ + YYLK T+K + C
Sbjct: 1781 NKFLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPEC 1840
Query: 356 GLEDALHTVCHAEEIAWIQLRRNEKKL 382
E+ L + AEE + +R NE +
Sbjct: 1841 STEELLSILSDAEEYTDLPVRHNEDHM 1867
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 147/503 (29%), Positives = 235/503 (46%), Gaps = 50/503 (9%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTKVFDI-------- 61
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L I
Sbjct: 638 STQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQ 697
Query: 62 ------------LMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR--EQ 107
L Q G +VF R A L + A G + F+ + E
Sbjct: 698 LNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGPEY 757
Query: 108 QERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
L++ S +KQ++ G H+ G+ +DRNL+E LF G ++VL T TLA G
Sbjct: 758 GHALKQVQKS-RNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWG 816
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227
+NLPAH V+IK TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + +
Sbjct: 817 VNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSH 876
Query: 228 YENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV 287
Y +LL +ESQ L + ++L AEI TV+++ +A++WM +YLYVRM+ NP Y +
Sbjct: 877 YLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGI 936
Query: 288 -RKVISRD-RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTM 345
K D + KH +++ ++ +L +MI +E + GR + YY+K++T+
Sbjct: 937 SHKAYQMDPTLRKHREQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTI 996
Query: 346 KYIMQTPVNCGLE-DALHTVCHAEEIAWIQLRRNEKKLL-----NVINIDKDGRLRFHIN 399
+ + E D V AEE I++R E + L N + G +
Sbjct: 997 ETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGG----VE 1052
Query: 400 GDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIF 459
GK +QT I + SL D ++ N +RI + + +
Sbjct: 1053 NSYGKINILLQT------------YISRGEMDSFSLISDSAYVAQNAARIVRALFE-IAL 1099
Query: 460 RKNYKGAVNSAL-LAKSLYQRLW 481
RK + L L+K + +RLW
Sbjct: 1100 RKRWPTMTYRLLNLSKVIDKRLW 1122
Score = 180 bits (456), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 189/397 (47%), Gaps = 34/397 (8%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSR 67
+ S + VR + +S + N D+A+WLN+ G+ F +RPV L + +
Sbjct: 1477 ISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHI--------Q 1528
Query: 68 GKSALVFCSTRKGAQEAAQQLSQT----------------AMTYGYSNPFIKDREQ---- 107
G +C + A Q S T +MT F+ E
Sbjct: 1529 GFPGQHYCPRMASMNKPAFQESHTHCPDRPCLLLPERMLSSMTKLELIAFLATEEDPKQW 1588
Query: 108 ----QERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNT 163
++ + + D ++ + +G+G H+ GL +DR +E LF+ VQVL T+T
Sbjct: 1589 LNMDEQEMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATST 1648
Query: 164 LAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223
LA G+N PAH V+IK T+Y++ + Y++ + +LQM GRAGRP F+D G +I+
Sbjct: 1649 LAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDI 1708
Query: 224 TVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQ 283
Y+ L VES LL +++HL AEI T++ A++++ +Y + R+ NP
Sbjct: 1709 KKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPS 1768
Query: 284 NYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFD 343
Y++ V S+D I K + + Q + EL I ED ++P GR+ + YYLK
Sbjct: 1769 YYNLGDV-SQDAINKFLSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHK 1827
Query: 344 TMKYIM-QTPVNCGLEDALHTVCHAEEIAWIQLRRNE 379
T+K + C E+ L + AEE + +R NE
Sbjct: 1828 TVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNE 1864
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/392 (30%), Positives = 194/392 (49%), Gaps = 23/392 (5%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV--------- 58
+ S + VR + +S + N D+A+WLN+ G+ F +RPV L +
Sbjct: 1477 ISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYC 1536
Query: 59 ----------FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ 108
F + +S K L+F S+R+ + A +L T ++ EQ+
Sbjct: 1537 PRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEQE 1596
Query: 109 ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
+ + D ++ + +G+G H+ GL +DR +E LF+ VQVL T+TLA G+
Sbjct: 1597 --MDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1654
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228
N PAH V+IK T+Y++ + Y++ + +LQM GRAGRP F+D G +I+ Y
Sbjct: 1655 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1714
Query: 229 ENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVR 288
+ L VES LL +++HL AEI T++ A++++ +Y + R+ NP YS+
Sbjct: 1715 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYSLG 1774
Query: 289 KVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYI 348
V S+D I K + + Q + EL I ED ++P GR+ + YYLK T+K
Sbjct: 1775 DV-SQDSINKFLSHLIGQSLVELELSHCIEVGEDNRTIEPLTCGRIASYYYLKHKTVKMF 1833
Query: 349 M-QTPVNCGLEDALHTVCHAEEIAWIQLRRNE 379
+ C E+ L + AEE + +R NE
Sbjct: 1834 KDRLKPECSTEELLSILSDAEEYTDLPVRHNE 1865
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 147/503 (29%), Positives = 234/503 (46%), Gaps = 50/503 (9%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTKVFDI-------- 61
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L I
Sbjct: 638 STQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSTNKMQQ 697
Query: 62 ------------LMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFI--KDREQ 107
L Q G +VF R A L + A G + F+ + E
Sbjct: 698 LNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTEGPEY 757
Query: 108 QERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
L++ S +KQ++ G H+ G+ +DRNL+E LF G ++VL T TLA G
Sbjct: 758 GHALKQVQKS-RNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWG 816
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227
+NLPAH VVIK TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + +
Sbjct: 817 VNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSH 876
Query: 228 YENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV 287
Y +LL +ESQ L + ++L AEI TV+++ +A+ WM +YLYVRM+ NP Y +
Sbjct: 877 YLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAYGI 936
Query: 288 -RKVISRD-RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTM 345
K D + KH +++ ++ +L +MI +E + GR + +Y+K++T+
Sbjct: 937 SHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNTI 996
Query: 346 KYIMQTPVNCGLE-DALHTVCHAEEIAWIQLRRNEKKLL-----NVINIDKDGRLRFHIN 399
+ + E D V AEE I++R E + L N + G +
Sbjct: 997 ETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGG----VE 1052
Query: 400 GDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIF 459
GK +QT I + SL D ++ N +RI + + +
Sbjct: 1053 NSYGKINILLQT------------YISRGEMDSFSLISDSAYVAQNAARIVRALFE-IAL 1099
Query: 460 RKNYKGAVNSAL-LAKSLYQRLW 481
RK + L L+K + +RLW
Sbjct: 1100 RKRWPTMTYRLLNLSKVIDKRLW 1122
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 145/502 (28%), Positives = 233/502 (46%), Gaps = 48/502 (9%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTKVFDI-------- 61
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L I
Sbjct: 637 STQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPVPLGQTFLGIKSANKVQQ 696
Query: 62 ------------LMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQE 109
L Q G +VF R A L + A G F+ + +
Sbjct: 697 LNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNNGQICYFLPTQGPEY 756
Query: 110 RLREASLSCS-DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
E + S ++Q++ G H+ G+ +DRNL+E LF G ++VL T TLA G+
Sbjct: 757 GHAEKQVQKSRNRQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGV 816
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228
NLPAH V+IK TQ + ++G +++ ++Q+ GRAGRP F+ G II+T + + Y
Sbjct: 817 NLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHY 876
Query: 229 ENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV- 287
+LL +ESQ L + ++L AEI TV+++ +A++W+ +YLYVRM+ NP Y +
Sbjct: 877 LSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGIS 936
Query: 288 RKVISRD-RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK 346
K D + KH +++ ++ +L +MI +E + GR + YY+K++T++
Sbjct: 937 HKAYQIDPTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIE 996
Query: 347 YIMQTPVNCGLE-DALHTVCHAEEIAWIQLRRNEKK-----LLNVINIDKDGRLRFHING 400
+ E D V AEE I++R E + L N + G +
Sbjct: 997 TFNELFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSAPGG----VEN 1052
Query: 401 DKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFR 460
GK +QT I V SL D ++ N +RI + + + R
Sbjct: 1053 SYGKINILLQT------------YISRGEVDSFSLISDSAYVAQNAARIVRALFE-IALR 1099
Query: 461 KNYKGAVNSAL-LAKSLYQRLW 481
K + L L+K + +RLW
Sbjct: 1100 KRWPAMTYRLLNLSKVIDKRLW 1121
Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 192/387 (49%), Gaps = 23/387 (5%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV----------------- 58
VR + +S + N D+A+WLN+ G+ F +RPV L +
Sbjct: 1484 VRIVGLSTALANARDLADWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNK 1543
Query: 59 --FDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
F + +S K L+F S+R+ + A +L T ++ E++ +
Sbjct: 1544 PTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDERE--MENIIG 1601
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
+ D ++ + +G+G H+ GL +DR +E LF+ +QVL T+TLA G+N PAH V+
Sbjct: 1602 TIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVI 1661
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCE 236
IK T+Y++ + Y++ + +LQM GRAGRP F+D G +I+ Y+ L
Sbjct: 1662 IKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPF 1721
Query: 237 MVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRI 296
VES LL +++HL AEI T++ A++++ +Y + R+ NP Y++ V S D +
Sbjct: 1722 PVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLSDV-SHDSV 1780
Query: 297 EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVNC 355
K + + + + EL I ED ++P GR+ + YYLK T+K + C
Sbjct: 1781 NKFLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERLKPEC 1840
Query: 356 GLEDALHTVCHAEEIAWIQLRRNEKKL 382
G E+ L + AEE + +R NE +
Sbjct: 1841 GTEELLSILSDAEEYTDLPVRHNEDHM 1867
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 142/501 (28%), Positives = 236/501 (47%), Gaps = 58/501 (11%)
Query: 16 VRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL-------TTK---------- 57
VR + +SAT+PN ED+A +L V P +G+ F RPV L T K
Sbjct: 646 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMN 705
Query: 58 --VFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD-REQQERLREA 114
V++ +M+++ LVF +RK + A+ + + F+++ E LR
Sbjct: 706 EIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTE 765
Query: 115 SLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHT 174
+ C + +++ + YG H+ G+ DR L+E LF +QVL +T TLA G+NLPAHT
Sbjct: 766 AEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHT 825
Query: 175 VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNG 234
V+IK TQ ++ EKG + E ILQM GRAGRP ++ G I++T + Y +LLN
Sbjct: 826 VIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQ 885
Query: 235 CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRK----- 289
+ESQ++S + + L AEIV V + A+ W+ +YLY+RM ++P Y +
Sbjct: 886 QLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKG 945
Query: 290 --VISRDRIE-KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK 346
++ + R++ H + + K + ++ D+ + E GR+ + YY+ DT++
Sbjct: 946 DPLLDQRRLDLVHTAALMLDK------NNLVKYDKKTGNFQVTELGRIASHYYITNDTVQ 999
Query: 347 YIMQ--TPVNCGLEDALHTVCHAEEIAWIQLRRNEK----KLLNVINIDKDGRLRFHING 400
Q P +E + E I +R EK KLL + I
Sbjct: 1000 TYNQLLKPTLSEIE-LFRVFSLSSEFKNITVREEEKLELQKLLERVPI------------ 1046
Query: 401 DKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFR 460
K+ I+ KI VL I + +L DM ++ + R+ + + + + R
Sbjct: 1047 ---PVKESIEEPSAKINVLLQ-AFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNR 1102
Query: 461 KNYKGAVNSALLAKSLYQRLW 481
+ + L K + +R+W
Sbjct: 1103 GWAQLTDKTLNLCKMIDKRMW 1123
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 137/528 (25%), Positives = 230/528 (43%), Gaps = 42/528 (7%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL-------------------TT 56
+R +A+S+++ N +D+A WL F +RPV L
Sbjct: 1485 IRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAK 1544
Query: 57 KVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
V+ + ++S K +VF +RK + A + T F+ E+ L
Sbjct: 1545 PVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKD--LIPYLE 1602
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
SD ++ +L GVGY + GL +R L+E LF G +QV+ + +L G+N+ AH V+
Sbjct: 1603 KLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVI 1662
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCE 236
I TQY+N + Y+++ +LQM G A RP +D G +IM + ++ L
Sbjct: 1663 IMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPL 1722
Query: 237 MVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRI 296
VES L C+ +H AEIV T+ + A++++ ++LY RM +NP Y+++ IS +
Sbjct: 1723 PVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHL 1781
Query: 297 EKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVNC 355
H+ E+ Q + +L + I + ED + P G + YY+ + T++ + M
Sbjct: 1782 SDHLSELVEQTLSDLEQSKCI-SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKT 1840
Query: 356 GLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEK 415
+ + + +A E I +R +E LL + ++ +N K
Sbjct: 1841 KVRGLIEIISNAAEYENIPIRHHEDNLLRQLA----QKVPHKLNNPKFNDPH-------- 1888
Query: 416 IFVLANDCLIGDPSVHDLS--LTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLA 473
V N L S LS L D I + R+ + D A+ + LA
Sbjct: 1889 --VKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELA 1946
Query: 474 KSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKS-FETLAEADPRR 520
+ + Q +W Y LKQLP K G++S F+ + D R
Sbjct: 1947 QMVTQAMWSKDSY-LKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEER 1993
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 190/389 (48%), Gaps = 22/389 (5%)
Query: 17 RFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDI--------------- 61
R + +SAT+PN ED+ +L VP +G+ F RP L+ + I
Sbjct: 666 RIIGLSATLPNYEDVGRFLRVPKEGLFYFDSSFRPCPLSQQFCGIKERNSLKKLKAMNDA 725
Query: 62 -----LMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK-DREQQERLREAS 115
L + G +VF +RK A L ++ K D ++ L+ +
Sbjct: 726 CYEKVLESINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEA 785
Query: 116 LSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTV 175
+ D ++ I G+G H+ GL DR+L E LF G +QVL T TLA G+NLPAHTV
Sbjct: 786 ANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTV 845
Query: 176 VIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGC 235
+IK T ++ EKG + + +LQM GRAGRP ++ G II+T + V Y ++LN
Sbjct: 846 IIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQ 905
Query: 236 EMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDR 295
+ESQ +S + ++L AE+V + A+ W+ +YLYVRM +P Y V + S +
Sbjct: 906 LPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKVPDISSDGQ 965
Query: 296 IEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK-YIMQTPVN 354
++K + + + L +++ D + +++ + G + + +Y+ +M Y + +
Sbjct: 966 LKKFRESLVHSALCILKEQELVLYDAENDVIEATDLGNIASSFYINHASMDVYNRELDEH 1025
Query: 355 CGLEDALHTVCHAEEIAWIQLRRNEKKLL 383
D +EE ++ +R EK+ L
Sbjct: 1026 TTQIDLFRIFSMSEEFKYVSVRYEEKREL 1054
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 119/551 (21%), Positives = 219/551 (39%), Gaps = 65/551 (11%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFG--EEMRPVKLTTKVFDILMQYSRGKSAL- 72
+RF+ +S + N D EW + I F E + P+++ + F + S S L
Sbjct: 1506 IRFVCLSNCLANARDFGEWAGMTKSNIYNFSPSERIEPLEINIQSFKDVEHISFNFSMLQ 1565
Query: 73 -----------------VFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREAS 115
VF +RK E A M + + + ++E++
Sbjct: 1566 MAFEASAAAAGNRNSSSVFLPSRKDCMEVASAF----MKFSKAIEWDMLNVEEEQIVPYI 1621
Query: 116 LSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTV 175
+D +++ + +GVG G+ D +++ L+ G V VL + + V
Sbjct: 1622 EKLTDGHLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCS-AFACKTDEV 1680
Query: 176 VIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDT--GTVIIMTRRETVHLYENLLN 233
+I T ++ + YM + + +L+M G A ND+ G V+I+T Y+ L
Sbjct: 1681 IILGTNLYDGAEHKYMPYTINELLEMVGLASG---NDSMAGKVLILTSHNMKAYYKKFLI 1737
Query: 234 GCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISR 293
ES L + + L EI + ++W SY Y R+ NP Y VR
Sbjct: 1738 EPLPTESYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPH 1797
Query: 294 --DRIEKHMQEVCVQKVDELSCHQMIWT------------DEDGFLLKPQEPGRLMTKYY 339
++ E C+ + E S ++ T DE ++ G + + Y
Sbjct: 1798 GISVFLSNLVETCLNDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYG 1857
Query: 340 LKFDTMKYIMQTPVNCG-LEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHI 398
+ F T++ + + N L++ L+ + A E + LR+ ++ LL + + K LRF
Sbjct: 1858 VSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALL--VKLSKRLPLRFPE 1915
Query: 399 NGDKGKRKKRIQTREEKIFVL--ANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDY 456
+ G + K+F+L A + P + D+ I + + D
Sbjct: 1916 HTSSG-------SVSFKVFLLLQAYFSRLELP----VDFQNDLKDILEKVVPLINVVVD- 1963
Query: 457 FIFRKNYKGAVNSALLAKSLYQRLWD-DSPYLLKQLPGIGMVTAKALHSMGIKS-FETLA 514
+ Y A + LA+ L Q +WD D+P L+Q+P + + +++ ++ +A
Sbjct: 1964 ILSANGYLNATTAMDLAQMLIQGVWDVDNP--LRQIPHFNNKILEKCKEINVETVYDIMA 2021
Query: 515 EADPRRIEIVT 525
D R EI+T
Sbjct: 2022 LEDEERDEILT 2032
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 203/408 (49%), Gaps = 33/408 (8%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL---------TTKVFD 60
S+ + +R L +SAT+PN D+A +L+V P G+ F RPV L T KV
Sbjct: 235 STQSMIRILGLSATLPNYLDVATFLHVNPFIGLFYFDSRFRPVPLGQSFVGIKTTNKVQQ 294
Query: 61 -----------ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQE 109
+L Q G +VF R A L + A G + F D+
Sbjct: 295 LHDMEEVCYEKVLKQIKAGHQVMVFVHARNSTVRTAMSLIEMAKNRGELSFFQVDQGADY 354
Query: 110 RLREASLSCS-DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
E + S +KQM+ G G H+ G+ +DR+L+E +F +G ++VL T TLA G+
Sbjct: 355 GQCEKQIQRSRNKQMREMFPDGFGIHHAGMLRQDRSLMESMFSRGYLKVLVCTATLAWGV 414
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228
NLPAH V+IK T ++ ++G ++ ++Q+ GRAGRP F+ G I+T + + Y
Sbjct: 415 NLPAHAVIIKGTNIYDAKRGTLVDLGILDVMQIFGRAGRPQFDKYGEGTIITTHDKLSHY 474
Query: 229 ENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV- 287
LL +ESQ + ++L AEI TV+++ +A+ W+ +YLYVRM+ NP Y +
Sbjct: 475 LTLLTQQNPIESQFQQSLADNLNAEIALGTVTNVDEAVRWLSYTYLYVRMRANPLAYGIN 534
Query: 288 RKVISRD-RIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK 346
K D ++E + +E+ V+ +L +MI DE + GR + +Y+K++T++
Sbjct: 535 HKAYQMDPQLELYRKELVVESGRKLDKARMIRFDERTGYFASTDLGRTASHFYIKYNTIE 594
Query: 347 YIMQTPVNCGLE-DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGR 393
+ E D L V AEE I++R E+ D DG+
Sbjct: 595 SFNELFNAQNTEADVLSIVSKAEEFEQIKVRVQEE--------DADGK 634
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 182/358 (50%), Gaps = 22/358 (6%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTK---------- 57
+ S + +VR + +S + N D+A+WL + G+ F +RPV L
Sbjct: 1038 ISSHTSKTVRVVGLSTALANARDLADWLGIGQVGLFNFRPSVRPVPLEVHIQGFPGQHYC 1097
Query: 58 ---------VFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ 108
VF + +S K L+F S+R+ + A L A +P + +
Sbjct: 1098 PRMATMNKPVFQAIRTHSPAKPVLIFVSSRRQTRLTA--LDLIAFLATEDDPKQWLHQDE 1155
Query: 109 ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
+ + + + ++ + +G+G H+ GL +DR +E LF+ +QVL T+TLA G+
Sbjct: 1156 REMTDIIATIRESNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGV 1215
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228
N PAH V++K T+Y++ + Y+++ + +LQM GRAGRP F+D G +I+ Y
Sbjct: 1216 NFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1275
Query: 229 ENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVR 288
+ L VES LLS +++HL AEI TV+ A++++ +Y + R+ NP Y++
Sbjct: 1276 KKFLYEPFPVESSLLSVLSDHLNAEIAAGTVTSKQDAMDYITWTYFFRRLVMNPSYYNLD 1335
Query: 289 KVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK 346
IS + I K++ + + + +L C + +D ++P GR+ + YYLK T++
Sbjct: 1336 D-ISHETINKYLSNLVERSLRDLECSYCMEIQQDEQTIEPLTYGRISSYYYLKHQTIR 1392
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 182/388 (46%), Gaps = 31/388 (7%)
Query: 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL------------- 54
+ S + VR L +S + N D+A WL V G+ F +RPV L
Sbjct: 1289 ISSQTKQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYIDGFPDNLAF 1348
Query: 55 -------TTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQ 107
VF + Q+S K AL+F ++R+ + A L F+ + +
Sbjct: 1349 CPLMKTMNKPVFMAIKQHSPDKPALIFVASRRQTRLTALDLIHLCGMEDNPRRFL-NIDD 1407
Query: 108 QERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
+E L+ +D ++ + +G+G H+ GL KDR++ LF K +Q+L T+TLA G
Sbjct: 1408 EEELQYYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWG 1467
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227
+NLPAH V+IK TQ+F+ + Y + D + ILQM GRAGRP ++ TGT I+ T+
Sbjct: 1468 VNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMF 1527
Query: 228 YENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV 287
Y++ LN VES L + +HL AEI ++++ +A++++ ++L+ R NP Y +
Sbjct: 1528 YKHFLNVGFPVESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFLFRRAHHNPTYYGI 1587
Query: 288 RKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKY 347
S + +H+ + ++ L Q + D + P +L + Y
Sbjct: 1588 EDDTSTAGVSEHLSSLIDSTLENLRESQCVLLHGDDIVATP----------FLSISSYYY 1637
Query: 348 IMQTPVNCGLEDALHTVCHAEEIAWIQL 375
I + L+ E + W+ L
Sbjct: 1638 ISHLTIRQLLKQIHDHATFQEVLRWLSL 1665
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/512 (27%), Positives = 252/512 (49%), Gaps = 44/512 (8%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKLTTKV----------- 58
SS + +R + +SAT+PN D+A++L V Q G+ F + RP L ++
Sbjct: 453 SSQSMIRIIGLSATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQ 512
Query: 59 ---------FDILMQY-SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ 108
+D L + RG +VF +RK ++A+ + A + + F D ++
Sbjct: 513 SKENIDKVAYDKLSEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEK 572
Query: 109 ERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
++ + + DK M+ +G G H+ G+ DRNL E +F G ++VLC T TLA G+
Sbjct: 573 DKYSRSLVKNRDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGV 632
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDT-GTVIIMTRRETVHL 227
NLPA V+IK TQ ++ +KG +++ S ++Q+ GR GRP F GT I+ T + +
Sbjct: 633 NLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDH 692
Query: 228 YENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSV 287
Y +L+ +ES+ S + ++L AEI +V+++ +AIEW+ +Y++VRM+KNP Y +
Sbjct: 693 YVSLITQQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGI 752
Query: 288 --RKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTM 345
++ + ++ + +++ V L QMI DE ++ GR+ + +YL +++
Sbjct: 753 DWEEIANDPQLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESV 812
Query: 346 KYIMQTPVNCGLE-DALHTVCHAEEIAWIQLRRNEKKLLNVINIDK-DGRLRFHINGDKG 403
+ Q E D L + + E I+ R E K L ++ + + ++ ++ +G
Sbjct: 813 EIFNQMCDPRATEADVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIGSQLDTPQG 872
Query: 404 KRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNY 463
K +Q I + D +L+ D N ++ N RI + + + I
Sbjct: 873 KANVLLQ------------AYISQTRIFDSALSSDSNYVAQNSVRICRAL--FLIGVNRR 918
Query: 464 KGAVNSALL--AKSLYQRLWD-DSPYLLKQLP 492
G ++ +L KS+ +RLW D P LP
Sbjct: 919 WGKFSNVMLNICKSIEKRLWAFDHPLCQFDLP 950
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 140/570 (24%), Positives = 244/570 (42%), Gaps = 111/570 (19%)
Query: 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD------------ 60
L + + +SATI N E++AEWLN K + RPVKL VF
Sbjct: 167 LGRAQIIGLSATIGNPEELAEWLNA-----KLIRSDWRPVKLRKGVFYQGFVFWEDGGSE 221
Query: 61 --------ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLR 112
+ +GK ALVF + R+ A++ A +L++ Y DR++ LR
Sbjct: 222 RYNSWEELVYDAVKKGKGALVFVNMRRKAEKTALELAKKVKNY-------LDRKELRELR 274
Query: 113 EASLSC----SDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
E + S +++++ +L GV +H+ GL +R L+E F KG ++V+ T TL+ GI
Sbjct: 275 ELAESLEENPTNEKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGI 334
Query: 169 NLPAHTVVIKSTQYFNKEKGLYMEHDRSTIL---QMCGRAGRPPFNDTGTVIIM-TRRET 224
N PA V+I+ T ++ E G+ +R +L QM GRAGRP +++ G II+ T E
Sbjct: 335 NTPAFRVIIRDTWRYS-EFGM----ERIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEEP 389
Query: 225 VHLYENLLNG-CEMVESQLL--SCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKN 281
+ ++ + G E + SQL S + + A I S+ + ++++ ++ Y K+
Sbjct: 390 SLVIDHYIKGKPEKLFSQLSNESILRSQILALIATFGYSEFKEIYDFLERTF-YAHQGKD 448
Query: 282 PQ--NYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYY 339
P +R++I +E EV ++ DE +KP G TK Y
Sbjct: 449 PYMLEEKIRRIIYF-LLENEFIEVTLE--DE---------------IKPLPLGVRTTKLY 490
Query: 340 LK-------FDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG 392
+ DT+ I + P G+ H + A ++ + + E +L
Sbjct: 491 IDPMTAKIFKDTLPRIEKNPNPLGI---FHMISLAPDLTPLSYSKRETSMLEDEYYSLMD 547
Query: 393 RLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKC 452
RL F ++ + E K F L+ + ++++ + + + I +
Sbjct: 548 RLYFELDYEN----------ERKFFRAFKTALVLNAWINEVPEGEIVERFNVEPGDIYRI 597
Query: 453 MR--DYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYL--------------LKQLPGIGM 496
+ ++ I+ G + L A Q + D L L +LP +G
Sbjct: 598 VETAEWLIYS---LGEIAKVLEAS---QEVVDYVNTLRLRVKHGIREELIPLMELPMVGR 651
Query: 497 VTAKALHSMGIKSFETLAEADPRRIEIVTG 526
A+AL++ G K E++ A P + + G
Sbjct: 652 KRARALYNAGFKDLESIRNAKPSELLRIEG 681
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 152/615 (24%), Positives = 257/615 (41%), Gaps = 138/615 (22%)
Query: 1 MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF- 59
ML NP++ + +SATI N E++A WLN K + RPV L V+
Sbjct: 169 MLNLNPQI----------IGLSATIGNPEELANWLNA-----KLVKSDWRPVSLREGVYH 213
Query: 60 ------------------DILMQYS-----RGKSALVFCSTRKGAQEAAQQLSQTAMTYG 96
D L+ + G LVF S+R+GA A++L++ Y
Sbjct: 214 KGVVTYVNDGEKRISGQGDSLINLTVDTLNDGGQVLVFSSSRQGAVRIARKLAE----YI 269
Query: 97 YSNP--FIKDREQ---QERLREASLS-CSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF 150
S+P +I E E +RE S S +++ I GV +H+ GL L+ R +IE F
Sbjct: 270 CSSPVRYIDPGEAGKLAEEVRETSSSRILAEELTGLIKCGVSFHHAGLELEVRRVIEEGF 329
Query: 151 LKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPF 210
+G ++VL +T TLA G+NLPA V++ + + G ++E QM GRAGRP
Sbjct: 330 RRGVLRVLASTTTLAAGVNLPARRVIVNEYRRYEPGYG-FIEIPVMEYKQMAGRAGRPGL 388
Query: 211 NDTGTVIIM--TRRETVHLYENLLNG-CEMVESQLL--SCVTEHLTAEIVQMTVSDITQA 265
+ G II+ ++ E ++ + + E V+S + + + H + + I +
Sbjct: 389 DPYGEAIIIVSSKDEVDYVIDKYIKSPPEYVKSNFMNPTSLKFHTLSAVASQYAETIDEL 448
Query: 266 IEWMKCSYLYVRMKKNP--QNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDG 323
+++ ++ + K + Q SVR++ISR +DEL + I + D
Sbjct: 449 VKFTSNTFAGFQGKLSAMIQANSVRRMISR-------------IIDELVDYGFIIRNGDK 495
Query: 324 FLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHT-----VCHAEEIAWIQLRRN 378
L+ E G ++ + YL DT + N + L+ V + +I +++RRN
Sbjct: 496 --LEATEVGAVVNRMYLDPDTAHVFIMGLRNLNSDADLNAYSLMLVVKSPKIPKVKVRRN 553
Query: 379 E----------------------KKLLNVINIDKDGRLRFHI-----------NGDKGKR 405
E +L+N +D F N D+ +
Sbjct: 554 ELDELAQQAASMWSSIPLKPSDVDELVNYPEDYEDFLSEFKTAMALLEWINESNEDQIMK 613
Query: 406 KKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKG 465
+Q + ++ + LIG ++ +L+ T ++ NG R R K
Sbjct: 614 TYDVQPGDLRVLSDQAEWLIG--ALQELARTLGLSGNVVNGLR---------ALRYRVKY 662
Query: 466 AVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVT 525
VN LL L+ L G+G V A+AL++ G +S E LA+A+ + +
Sbjct: 663 GVNDELLE-------------LVVNLEGVGRVRARALYAAGYRSIEDLAKANVSDLTRIR 709
Query: 526 GRKYPFGNHIKESLL 540
G G+ I S++
Sbjct: 710 G----IGDKIAGSII 720
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 144/563 (25%), Positives = 232/563 (41%), Gaps = 111/563 (19%)
Query: 11 SSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSR--- 67
+S + + +SAT+PN +IAEW+ G K RPV L VF YS
Sbjct: 169 ASAGEAQLVGLSATVPNAGEIAEWI-----GGKIVESSWRPVPLREYVFKEYKLYSPTGG 223
Query: 68 ----------------------GKSALVFCSTRKGA----QEAAQQLSQTAMTYGYSNPF 101
G ALVF +R+ A + AA++L +
Sbjct: 224 LREVPRVYGLYDLDLAAEAIEDGGQALVFTYSRRRAVTLAKRAAKRLGRR---------- 273
Query: 102 IKDREQQERLREASLS-----CSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQ 156
+ RE + EAS + +++ S I G+ YH+ GL R +E F G V+
Sbjct: 274 LSSREARVYSAEASRAEGAPRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVK 333
Query: 157 VLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTV 216
V+ +T TLA G+NLPA VVI S Y+ E G + QM GRAGRP ++ G
Sbjct: 334 VVYSTPTLAAGVNLPARRVVIDS--YYRYEAGFREPIRVAEYKQMAGRAGRPGLDEFGEA 391
Query: 217 IIMTRRETVHLYENLLNGC-----EMVESQLLSCV-TEHLTAEIVQMTVSDITQAIEWMK 270
II+ R + E+L++G E VES+L H IV +IE K
Sbjct: 392 IIVAER--LDRPEDLISGYIRAPPERVESRLAGLRGLRHFILGIVAPEGEVSIGSIE--K 447
Query: 271 CSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQE 330
S L + YS+++ + R E + V++LS ++ + G+ +
Sbjct: 448 VSGLTL--------YSLQRGLPR--------ETIARAVEDLSAWGLV--EVKGWRIAATS 489
Query: 331 PGRLMTKYYLKFDTMKYIMQTPVNCGLE---DALHTVCHAEEIAWI-QLRRNEKKLLNVI 386
GR + YL +++ + + + D L+ + ++ + RR E++LL I
Sbjct: 490 LGREVAAVYLDPESVPVFREEVKHLSFDNEFDILYLISTMPDMVRLPATRREEERLLEAI 549
Query: 387 NIDKDGRLRFHINGDKGKRKKRIQTREE-KIFV--LANDCLIGDPSVHD---LSLTQDMN 440
+D R+ ++ + ++T K+++ + D + G+ VH L++
Sbjct: 550 -LDASPRMLSSVDWLGPEEMAAVKTAVVLKLWIDEASEDTIYGEWGVHTGDLLNMVSTAE 608
Query: 441 SISTNGSRIA-------KCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPG 493
I++ SRIA K + + K V LL L ++PG
Sbjct: 609 WIASGLSRIAPYLGLNSKVSHILSVIARRIKHGVKPELLQ--------------LVEIPG 654
Query: 494 IGMVTAKALHSMGIKSFETLAEA 516
+G V A+ L G +S E LA A
Sbjct: 655 VGRVRARILFEAGYRSIEDLATA 677
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 134/266 (50%), Gaps = 54/266 (20%)
Query: 19 LAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL--------------------TTKV 58
L +SATI N ++IA WLN + RPV L + KV
Sbjct: 176 LGLSATISNGKEIANWLNAEL-----VATNWRPVPLKEGIIYPEKKGFVVVYKDNTSRKV 230
Query: 59 F--DILMQY-----SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ--- 108
+ D ++ Y S+G LVF S+RK A+ A+++ Q Y N F+K +++
Sbjct: 231 YGDDAIIAYTLDIVSKGGQVLVFRSSRKLAENTARKIVQ------YMN-FVKLEDKKLLE 283
Query: 109 --ERLREASLSCSDKQMQSY--ILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTL 164
+++E + S+++ Y +L GV YH+ GL R++IE F ++V+ T TL
Sbjct: 284 IARKIKEVEDAGSNEKEDLYNLVLRGVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTL 343
Query: 165 AHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTIL---QMCGRAGRPPFNDTGTVIIMTR 221
A G+NLPA VVI +N++ YM D ++ QM GRAGRP F++ G +++ R
Sbjct: 344 AAGVNLPARAVVIGDIYRYNRKVVGYM--DLIPVMDYKQMSGRAGRPGFDENGEAVVVVR 401
Query: 222 --RETVHLYEN-LLNGCEMVESQLLS 244
RE +YE L++ E +ES+L S
Sbjct: 402 NKREAEKVYERYLMSDVEPIESKLGS 427
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 131/570 (22%), Positives = 230/570 (40%), Gaps = 130/570 (22%)
Query: 4 CNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF---- 59
NPE R +A+SAT+ N +IAEWLN + RPV L +
Sbjct: 166 VNPE--------TRIIALSATVSNASEIAEWLNASL-----IKSSFRPVPLKVGILYRNR 212
Query: 60 -------------DILMQYS--RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD 104
++L++ + G L+F S+RK A++ A+ LSQ + D
Sbjct: 213 LFLDGDARSDVDINLLVKETVDDGGQVLIFVSSRKRAEDMAKNLSQ-----------LFD 261
Query: 105 REQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTL 164
++ + D + + +GV +H+ GL + R+ IE F ++V+ T TL
Sbjct: 262 PINDLKVSSEDANVYDDLLNEMLPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIVATPTL 321
Query: 165 AHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT---- 220
A G+NLPA V++K + Y+ + + QM GRAGRP ++ G II
Sbjct: 322 AAGVNLPARLVIVKDVTRYGDLGITYLSN--MEVKQMIGRAGRPGYDQYGIGIIYAASAN 379
Query: 221 RRETVHLY--------ENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCS 272
+ V Y ++ + E V L+ + L V+M E+ + +
Sbjct: 380 SYQVVKEYISEEPEPVDSYIGKPEKVRFNTLAAIAMGLATSQVEME--------EFYRST 431
Query: 273 YLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFL-----LK 327
+ Y QN D I + E + + E+GF+ L+
Sbjct: 432 FYYA------QN-------GEDEIPNRINE------------SIKFLKENGFIKEKDSLR 466
Query: 328 PQEPGRLMTKYYLKFDTM----KYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLL 383
E G++++ Y+ ++ KY N ++ AL+ + EIA I ++ + +
Sbjct: 467 ATEFGKMISNLYIDPESAIILKKYFDD---NDDIDTALYYISLCREIAPINMQDDYAAME 523
Query: 384 NVINIDKDGRLRFHINGDKGKRKKRIQTRE-------EKIFVLANDCLIGDPSVHDLSLT 436
+ +I HI+GD K + RE +IF + GD
Sbjct: 524 FLESIG-------HIDGDIEAAKTALVLREWISEASTRRIFEMYG-VAPGDLQAR----V 571
Query: 437 QDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGM 496
+ + IS + + +A + + K + + + + + + L D L +P IG
Sbjct: 572 NNADWISYSLAHLASIFKP----ERRRKLEILNMRIKEGIREELMD-----LVLIPAIGR 622
Query: 497 VTAKALHSMGIKSFETLAEADPRRIEIVTG 526
V A+ L+ GI + + LA +DP RI+++ G
Sbjct: 623 VRARRLYEAGIHNVQELAFSDPSRIKMLYG 652
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 144/297 (48%), Gaps = 41/297 (13%)
Query: 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD------------ 60
L + + +SATI N E++AEWLN K + RPVKL VF
Sbjct: 167 LNRAQIIGLSATIGNPEELAEWLNA-----KLIKSDWRPVKLRRGVFYQGFVFWEDGKTE 221
Query: 61 --------ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLR 112
+ R K +LVF + R+ A++ A +LS+ + + +E E L
Sbjct: 222 KFNSWEELVYDAIKRSKGSLVFVNMRRKAEKTALELSKKIRNFLTKKELRELKELAESLE 281
Query: 113 EASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPA 172
E + +++++ + GV +H+ GL ++R L+E F KG ++V+ T TL+ GIN PA
Sbjct: 282 E---NPTNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPA 338
Query: 173 HTVVIKSTQYFNKEKGLYMEHDRSTIL---QMCGRAGRPPFNDTGTVIIM-TRRETVHLY 228
V+++ T ++ E G+ +R IL QM GRAGRP +++ G II+ T E +
Sbjct: 339 FRVIVRDTWRYS-EFGM----ERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPSTVM 393
Query: 229 ENLLNG-CEMVESQLL--SCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNP 282
E + G E + SQL S + + A I S + ++++ ++ Y K+P
Sbjct: 394 ERYIKGKPEKLFSQLSNESILRGQILALIATFNFSSFREIYDFLERTF-YAYQGKDP 449
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 119/240 (49%), Gaps = 48/240 (20%)
Query: 18 FLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF------------------ 59
LA+SATI N +D+A+WLN + RPV L V
Sbjct: 175 ILALSATIGNAKDVAKWLNADI-----VATNWRPVPLKEGVMYSEGKKGHIILYSDGTTN 229
Query: 60 -----DILMQY-----SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK--DR-- 105
D ++ Y S+G +VF S+RK A+ A ++SQ Y N F+K D+
Sbjct: 230 KLKGDDPIIAYTLDILSKGGQVIVFRSSRKYAETTAMKISQ------YMN-FVKLDDKKL 282
Query: 106 -EQQERLREASLSCSDKQ--MQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTN 162
E ER++E + S+++ + + I+ GV +H+ GL R++IE F + ++V+ T
Sbjct: 283 LETAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRERIIKVITATP 342
Query: 163 TLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRST-ILQMCGRAGRPPFNDTGTVIIMTR 221
TLA G+NLPA VVI FN++ + E + QM GRAGRP +++ G II+ R
Sbjct: 343 TLAAGVNLPARAVVIGDIYRFNRKIVGFTEMISTMEYRQMSGRAGRPGYDNHGEAIILVR 402
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 133/561 (23%), Positives = 240/561 (42%), Gaps = 78/561 (13%)
Query: 18 FLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF--------DILMQ----- 64
F+ +SAT+ N ++A WL G + RPV L V+ D MQ
Sbjct: 173 FIGLSATVGNAGEVAAWL-----GARLVESSWRPVPLREGVYHGGVIRFSDGSMQRVNAP 227
Query: 65 -----------YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLRE 113
+ G ALVF ++R A+ +++ AM P +E L+
Sbjct: 228 GDAEVALAVDAVAGGGQALVFTNSRSSTVRLAKAVAK-AMEAAGLVPRGAKALAEEVLKA 286
Query: 114 ASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAH 173
+S +++ + GV +HN GL L+ R L+E F +G ++V+ +T TLA G+NLPA
Sbjct: 287 SSSKIIGRELADLVARGVAFHNAGLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPAR 346
Query: 174 TVVIKSTQYFNKEKGLYMEHDRSTIL---QMCGRAGRPPFNDTGTVIIMTRR--ETVHLY 228
VV+ + F+ G + +L QM GRAGRP + G +++ R E +L
Sbjct: 347 RVVVADYERFDPALG----REEIPVLEYRQMAGRAGRPGLDPYGEAVLVARSKGEAEYLM 402
Query: 229 ENLLNG-CEMVESQLLS--CVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNY 285
E + G E V S +L+ + H+ + + +++ + +MK
Sbjct: 403 ERYVRGQVEGVRSHILAEPNLRAHVLGAVGGGYAKSLDDLVDFFSNTLGAAQMKT----- 457
Query: 286 SVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTM 345
S++ I R +I ++E+ + + + DG + E GR + + YL +
Sbjct: 458 SLKLSILRSKIGGVVEELV----------EWGFLERDGDFVYATELGRQVARLYLDPEVA 507
Query: 346 K-YI-MQTPVNCG-LEDALHTVCHAEEIAWIQLRRNEKKLLNVI---NIDKDGRLRFHIN 399
YI + + G + L+ V A + ++ R +K+++ I ++ +
Sbjct: 508 AGYIRLIKSLRAGNVPAYLYVVLTAPDFPRVRRGRADKRVVEGILAALDVEEDEEFEDLA 567
Query: 400 GDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIF 459
I+ +E + D GD V+ + L Q + G+ AK R +
Sbjct: 568 RTASMLMAWIEEVDEDVIYEKFDVAPGDLRVY-VDLFQWL------GNAAAKLAR--LVG 618
Query: 460 RKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPR 519
R+ + G + A+ +Y + ++ L+ L G+G V A+ L++ G ++ E +A A R
Sbjct: 619 REEH-GKRLEVVTARVVYG-VREELLGLVTSLRGVGRVRARTLYNFGYRTLEDIARATVR 676
Query: 520 RIEIVTGRKYPFGNHIKESLL 540
I + G FG + ES++
Sbjct: 677 EIASLPG----FGEKLAESVI 693
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 133/618 (21%), Positives = 247/618 (39%), Gaps = 113/618 (18%)
Query: 3 ACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPV------KLTT 56
+C ++ SS +V+ + +SAT+PN+E +A WLN + + + RPV K+
Sbjct: 246 SCQADLASSLSNAVQIVGMSATLPNLELVASWLNAEL-----YHTDFRPVPLLESVKVGN 300
Query: 57 KVFDILMQYSR-------------------------GKSALVFCSTRKGAQEAAQQLSQT 91
++D M+ R S L+FC ++K ++ A +++
Sbjct: 301 SIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIARE 360
Query: 92 AMTYGYSN----------PFIKDR----EQQERLREASLSCSDKQMQSYILYGVGYHNGG 137
+ P I ++ E ++LR S D +Q + +GV +H+ G
Sbjct: 361 FYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLP-SGLDSVLQKTVPWGVAFHHAG 419
Query: 138 LCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRST 197
L ++R++IEG F +G ++VL T+TL+ G+NLPA V+I++ + + D T
Sbjct: 420 LTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPL------DILT 473
Query: 198 ILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGC-EMVESQLLSCVTEHLTAEIVQ 256
QM GRAGR + G I++ + LL G + V S L E +T +++
Sbjct: 474 YKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIR 533
Query: 257 MTVSDITQAIE--------WMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKV 308
+ I + + C++L MK+ Q +++ ++ E CV +
Sbjct: 534 AILEIIVGGVASTSQDMHTYAACTFLAASMKEGKQGIQR----NQESVQLGAIEACVMWL 589
Query: 309 DELSCHQMIWTDE-----DGFLLKPQEPG---------------------RLMTKYYLKF 342
E ++ I + E +G + P G R M + L+
Sbjct: 590 LE---NEFIQSTEASDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLEN 646
Query: 343 DTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDK 402
D + TP+ ED + W +L + K++ ++ ++ +G L + G
Sbjct: 647 DLHILYLVTPM---FEDWTTIDWYRFFCLWEKLPTSMKRVAELVGVE-EGFLARCVKGKV 702
Query: 403 GKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFR-- 460
R +R Q R+ I L+ + ++ L + N +I + ++
Sbjct: 703 VARTER-QHRQMAIHKRFFTSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGM 761
Query: 461 ----KNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVT---AKALHSMGIKSFETL 513
N G N LL +RL L L + ++ A+ L++ G + L
Sbjct: 762 ITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADL 821
Query: 514 AEADPRRIEIVTGRKYPF 531
A A+ +E++ PF
Sbjct: 822 ARANIVEVEVILKNAVPF 839
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 40/274 (14%)
Query: 6 PEMKSSSLASVR--FLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF---- 59
P ++S ++ + R LA+SATI N + IA+WL G + RPV L V
Sbjct: 157 PVVESVTIRAKRRNLLALSATISNYKQIAKWL-----GAEPVATNWRPVPLMEGVMYPER 211
Query: 60 --------------------DILMQY-----SRGKSALVFCSTRKGAQEAAQQLSQTAMT 94
D ++ Y S+ LVF ++RK A+ A +++
Sbjct: 212 KKKEYTILFRDNTARKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNF 271
Query: 95 YGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGD 154
I + +Q E S + ++S I GV YH+ GL R++IE F K
Sbjct: 272 VSLDEKAISEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRK 331
Query: 155 VQVLCTTNTLAHGINLPAHTVVIKSTQYFNKE-KGLYMEHDRSTILQMCGRAGRPPFNDT 213
++V+ T TLA G+NLPA TV+I FN++ G Y E QM GRAGRP F+
Sbjct: 332 IKVIVATPTLAAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQI 391
Query: 214 GTVIIMTR-RETVH--LYENLLNGCEMVESQLLS 244
G II+ R +E V + +L+ E +ES+L S
Sbjct: 392 GESIIVVRDKEDVDRVFKKYILSDVEPIESKLGS 425
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 36/232 (15%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNV--------PV---QGI-----KRFGEEMRPVKLTTKV 58
++ + +SATI N + +A WL+ PV QG+ +F E MRPVK +K
Sbjct: 168 GMQLIGLSATIGNPKVLAGWLDAELVTSSWRPVDLRQGVFYDNRIQFAERMRPVKQVSKN 227
Query: 59 FD----ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQ-----E 109
+D L + G LVF S+R+ A+ A++ + IK + E
Sbjct: 228 YDDLNLCLDTIAEGGQCLVFVSSRRNAEAFAKRAAGA----------IKSEDAALAACAE 277
Query: 110 RLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGIN 169
RL E + + K + + + G +H+ GL K+R+++E F K ++ + +T TLA G+N
Sbjct: 278 RLLEGTPTEMVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGLN 337
Query: 170 LPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTR 221
LPA V+I+ F+ +G+ S QM GRAGRP + G +++ +
Sbjct: 338 LPARRVIIRDYLRFSAGEGM-QPIPVSEYRQMAGRAGRPRLDPYGEAVLIAK 388
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 38/232 (16%)
Query: 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF------------D 60
L + + +SATI N E++AEWLN + + RPVKL VF D
Sbjct: 167 LGKAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQGFVTWEDGSID 221
Query: 61 ILMQYS--------RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD-REQQERL 111
+ + K AL+F + R+ A+ A +LS+ + + P I+ E + L
Sbjct: 222 RFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSL-LTKPEIRALNELADSL 280
Query: 112 REASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLP 171
E + +++++ I GV +H+ GL +R L+E F KG ++ + T TL+ GIN P
Sbjct: 281 EE---NPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTP 337
Query: 172 AHTVVIKSTQYFNKEKGLYMEHDRSTIL---QMCGRAGRPPFNDTGTVIIMT 220
A V+I+ ++ +R I+ QM GRAGRP +++ G II++
Sbjct: 338 AFRVIIRDIWRYSD-----FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVS 384
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 133/577 (23%), Positives = 247/577 (42%), Gaps = 119/577 (20%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF-----------DILM 63
S + LA+SAT+ N +++A WL + E RP +L VF +
Sbjct: 171 SCQILALSATVGNADELAVWLEAEL-----VVSEWRPTELLEGVFFNGTFYCKDREKTVE 225
Query: 64 QYSRGKSA-------------LVFCSTRKG----AQEAAQQLSQTAMTYGYSNPFIKDRE 106
Q ++ ++ LVF S+RK A++AA + +T +DR
Sbjct: 226 QSTKDEAVNLALDTLKKDGQCLVFESSRKNCMAFAKKAASTVKKTLSA--------EDRN 277
Query: 107 Q----QERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTN 162
+ + E S + + + I G +H+ GL R L+E F G ++++ +T
Sbjct: 278 ALAGIADEILENSETDTSTNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISSTP 337
Query: 163 TLAHGINLPAHTVVIKSTQYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVII 218
TLA G+NLPA V+I++ + ++ E G+ +E+ QM GRAGRP + G ++
Sbjct: 338 TLAAGLNLPARRVIIRNYRRYSSEDGMQPIPVLEYK-----QMAGRAGRPRLDPYGEAVL 392
Query: 219 MTR--RETVHLYENLLNG-CEMVESQLLS--CVTEHLTAEIVQMTVSDITQAIEWMKCSY 273
+ + +E V L+EN + E + S+L + + H+ + I + +++++ ++
Sbjct: 393 VAKSYKEFVFLFENYIEANAEDIWSKLGTENALRTHVLSTISNGFARTYDELMDFLEATF 452
Query: 274 LYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGR 333
+ N+ + V++ + + QE ++K D L P G+
Sbjct: 453 FAFQY----SNFGLSTVVN-ECLNFLRQEGMLEKDDALI---------------PTSFGK 492
Query: 334 LMTKYYLKFDTMKYIMQTPVNCGLEDA--------LHTVCHAEEIAWIQLRRNEKKLLNV 385
L+++ Y+ + I + GL+ A LH VC ++ + +R ++ +
Sbjct: 493 LVSRLYIDPLSAARIAK-----GLKGAKSLSELTLLHLVCSTPDMRLLYMRSHDYQ---- 543
Query: 386 INIDKDGRLRFHINGDKGKRKKRIQTREEKIFV--LANDCLIGDPSVHDLSLTQ------ 437
D + + H + + K T E + F+ + L+ D +H+ S +
Sbjct: 544 ---DINDYVMAHAS-EFVKVPSPFDTTEYEWFLGEVKTSLLLLD-WIHEKSENEICLKFG 598
Query: 438 ----DMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYL--LKQL 491
D++SI+ I + KGA +A L K ++ + +P L L +
Sbjct: 599 TGEGDIHSIADIAEWIMHVTSQ-LAGLLDLKGAREAAELEKRIH---YGAAPELIDLLNI 654
Query: 492 PGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRK 528
GIG V A+ L+ G KS LAE DP ++ + G K
Sbjct: 655 RGIGRVRARKLYEAGFKSSAELAEVDPEKVAALLGPK 691
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 39/258 (15%)
Query: 15 SVRFLAVSATIPNIEDIAEWLN----------------VPVQGIKRFGEEMRPVKLTTK- 57
S + LA+SAT+ N +++A WL+ V GI ++ +PV TK
Sbjct: 171 SCQVLALSATVGNADELAAWLDAELVLSEWRPTDLMEGVFYNGIFYCKDKEKPVGQPTKD 230
Query: 58 --VFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREAS 115
V +L G LVF S+RK A++ + +A+ SN +DRE + +
Sbjct: 231 EAVNLVLDTIKEGGQCLVFESSRKNCMGFAKK-AVSAVKKTLSN---EDRETLAGIADEI 286
Query: 116 LSCSDKQMQSYILY----GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLP 171
+ S+ + S + G +H+ GL R L+E F +G ++++ +T TLA G+NLP
Sbjct: 287 IENSETDVSSVLATCVRSGTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLNLP 346
Query: 172 AHTVVIKSTQYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTR--RETV 225
A V+I+S + ++ + G+ +E+ QM GRAGRP + G +++ + E V
Sbjct: 347 ARRVIIRSYRRYSSDSGMQPIPVLEYK-----QMAGRAGRPRLDPYGEAVLLAKSYEEFV 401
Query: 226 HLYENLLN-GCEMVESQL 242
L+E + G E + S+L
Sbjct: 402 FLFEKYIEAGAEDIWSKL 419
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 37/222 (16%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGK------ 69
VR LA+SAT+ N ++A WL+ + + RPV L T + Y GK
Sbjct: 170 VRILALSATVSNAMELASWLDASL-----IKSDFRPVPLKTGILYRDQLYLDGKRRSGVS 224
Query: 70 -------------SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL 116
L+F S+RK A++ A+ L+Q +G S+ IK +
Sbjct: 225 INQIIRETVEDNGQVLMFVSSRKKAEDTARDLAQI---FG-SDANIK-------ISSDET 273
Query: 117 SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176
+ D + + GV +H+ GL R IE F ++V+ T TLA G+NLPA V+
Sbjct: 274 NVYDDMLNEILPRGVAFHHAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARLVI 333
Query: 177 IKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVII 218
++ + + Y+ + I QM GRAGRP ++ G +I
Sbjct: 334 VRDITRWGSDGISYLTN--MEIKQMIGRAGRPGYDQYGIGLI 373
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHI 535
L +PG+G V A+ L+ G++S E +A A P RI+ + G N I
Sbjct: 614 LVLIPGVGRVRARRLYDAGLRSIEDVASASPDRIKAIYGFSDTLANAI 661
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 30/233 (12%)
Query: 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-FDILMQYSRGKSA 71
+A ++ +A+SAT+ N ++A WL+ + + RP++L T V + + Y G A
Sbjct: 179 VADLQVVALSATVGNAGELAAWLDAEL-----VDSDWRPIELRTGVHYGQSLHYDDGTQA 233
Query: 72 ------------------------LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQ 107
LVF ++R+ A+ +A++L+ S + +
Sbjct: 234 ELSVGSGSQTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADI 293
Query: 108 QERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
+R S + + ++ + G +H+ GL + R L+E F V+ + T TLA G
Sbjct: 294 AAEIRGVSDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAG 353
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220
+N PA VV++ Q ++ G D + QM GRAGRP + G +++
Sbjct: 354 VNTPARRVVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLA 406
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 30/233 (12%)
Query: 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-FDILMQYSRGKSA 71
+A ++ +A+SAT+ N ++A WL+ + + RP++L T V + + Y G A
Sbjct: 179 VADLQVVALSATVGNAGELAAWLDAEL-----VDSDWRPIELRTGVHYGQSLHYDDGTQA 233
Query: 72 ------------------------LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQ 107
LVF ++R+ A+ +A++L+ S + +
Sbjct: 234 ELSVGSGSQTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADI 293
Query: 108 QERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
+R S + + ++ + G +H+ GL + R L+E F V+ + T TLA G
Sbjct: 294 AAEIRGVSDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAG 353
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220
+N PA VV++ Q ++ G D + QM GRAGRP + G +++
Sbjct: 354 VNTPARRVVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLA 406
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 33/245 (13%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSR------- 67
SVR +A+SAT+ N+++IA WL+ V + RPV L +V D M R
Sbjct: 160 SVRIVALSATLSNMDEIAGWLDARV-----VEHDYRPVPLHREVLDTEMFGVREKNDVVL 214
Query: 68 ---------GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSC 118
G L F STR+ + A L+ + RE ++ E S
Sbjct: 215 KVLERSLEDGSQTLAFVSTRRFTESLASHLADKISGKIPDDMVESFREVAGKVLEVPKSR 274
Query: 119 SDK------QMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPA 172
++ + G+ +H+ GL + R +IE F G++ ++ T +L +G+NLP+
Sbjct: 275 GSPPTSTCLKLAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLMYGVNLPS 334
Query: 173 HTVVIKS-TQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR--ETVHLYE 229
TVVI+ T++ ++ D QM GRAGRP ++D G ++ R E + L E
Sbjct: 335 RTVVIRDYTRWTSQGPRRIPVFDYE---QMSGRAGRPQYDDAGYSYLIARSHDEAMDLEE 391
Query: 230 NLLNG 234
+ G
Sbjct: 392 YYIRG 396
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 122/261 (46%), Gaps = 49/261 (18%)
Query: 17 RFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD---------------- 60
+ LA+SAT+ N +++A WL+ + E RP L VF
Sbjct: 173 QILALSATVGNADELAAWLDAEL-----VLSEWRPTDLMEGVFFDGTFFCKDKEKLIEQP 227
Query: 61 --------ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLR 112
+L G LVF S+RK A++ + +A+ S +D+E+ +
Sbjct: 228 TKDEAINLVLDTLREGGQCLVFESSRKNCMGFAKK-ATSAVKKTLSA---EDKEKLAGIA 283
Query: 113 EASLSCSDKQ----MQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGI 168
+ L S+ + S + G +H+ GL R L+E F +G V+++ +T TLA G+
Sbjct: 284 DEILENSETDTASVLASCVRAGTAFHHAGLTSPLRELVETGFREGYVKLISSTPTLAAGL 343
Query: 169 NLPAHTVVIKSTQYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTR--R 222
NLPA V+I+S + ++ + G+ +E+ QM GRAGRP + G +++ +
Sbjct: 344 NLPARRVIIRSYRRYSSDSGMQPIPVLEYK-----QMAGRAGRPRLDPYGEAVLLAKSYE 398
Query: 223 ETVHLYENLLN-GCEMVESQL 242
E + L+E + G E + S+L
Sbjct: 399 ELLFLFEKYIEAGAEDIWSKL 419
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 462 NYKGAVNSALLAKSLYQRLWDDSPYLLKQLP--GIGMVTAKALHSMGIKSFETLAEADPR 519
+ KGA +A L K ++ + P L+ L GIG V A+ L+ G KS LA A P
Sbjct: 627 DLKGAKEAAELEKRIH---YGAGPELMDLLDIRGIGRVRARKLYGAGFKSTADLAGATPE 683
Query: 520 RIEIVTGRK 528
++ + G K
Sbjct: 684 KVAALVGPK 692
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 97/407 (23%), Positives = 178/407 (43%), Gaps = 75/407 (18%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPV-----------QGI-----------KRFGEEMRPV 52
+++ LA+SATI N + +A+W++ + +G+ KR P
Sbjct: 176 NLQILALSATIGNAKALAKWMDAALVQSEWRPTTLKEGVFYGRAITFKKEKRTVNNAGPD 235
Query: 53 KLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD---REQQE 109
++ + V D L + G LVF +TRK ++ AQ+++++ P K+ + +Q+
Sbjct: 236 EVNSLVADTLEE---GGQCLVFANTRKSSESIAQKVARSLSKK--LQPAEKEQLAKLKQD 290
Query: 110 RLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGIN 169
LR A +K + + GV +H+ GL + R ++E F + ++V+ T TLA G+N
Sbjct: 291 VLRHAETDTCEK-LAECVGNGVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLN 349
Query: 170 LPAHTVVIKSTQYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR--E 223
LPA V+I+ + F+ G +E+ QM GRAGRP + G +++ + E
Sbjct: 350 LPARRVIIRDYKRFDVNYGSVPIPVLEYK-----QMAGRAGRPRLDPYGEAVLIAKNYDE 404
Query: 224 TVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQ 283
L EN +N EH+T+ ++ +A + + R +++ +
Sbjct: 405 FGELMENYIN-----------ADPEHITS---KLGTEPAMRAHALSAVATDFCRSRQDLK 450
Query: 284 NYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFD 343
+ + R + V ++ L MI + G LK + G L++K Y+
Sbjct: 451 AFMDTTFFAYQR--GDLSHVIDNVLNFLLEENMI-IESKGGSLKATDLGSLVSKLYIDPL 507
Query: 344 TMKYIMQTPVNCGLEDA-----------LHTVCHAEEIAWIQLRRNE 379
+ I + GLE A LH +C ++ + LRR +
Sbjct: 508 SAALIAE-----GLEKAKKRPDVAEFGLLHLICSTPDVKSLYLRRGD 549
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 137/590 (23%), Positives = 240/590 (40%), Gaps = 115/590 (19%)
Query: 16 VRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF---------------- 59
V+ +A+SAT+ N ++A+WL G E RP L V
Sbjct: 172 VQVVALSATVGNAREMADWL-----GAALVLSEWRPTDLHEGVLFGDAINFPGSQKKIDR 226
Query: 60 -------DILMQYSRGKSA-LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERL 111
++++ + + LVF S+R+ A+ S ++ IK E +
Sbjct: 227 LEKDDAVNLVLDTIKAEGQCLVFESSRRNCAGFAKTASSKVAKILDNDIMIKLAGIAEEV 286
Query: 112 REASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLP 171
+ + + + I GV +H+ GL R L+E F + ++V+ +T TLA G+NLP
Sbjct: 287 ESTGETDTAIVLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLP 346
Query: 172 AHTVVIKSTQYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIM--TRRETV 225
A V+I+S + F+ G+ +E+ QM GRAGRP + G +++ T E
Sbjct: 347 ARRVIIRSYRRFDSNFGMQPIPVLEYK-----QMAGRAGRPHLDPYGESVLLAKTYDEFA 401
Query: 226 HLYENLLNG-CEMVESQLLS--CVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNP 282
L EN + E + S+L + + H+ + IV S + ++ ++ + K
Sbjct: 402 QLMENYVEADAEDIWSKLGTENALRTHVLSTIVNGFASTRQELFDFFGATFFAYQQDK-- 459
Query: 283 QNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLK- 341
+ + +VI+ D +E + + V + +++ D L+ G L++ Y+
Sbjct: 460 --WMLEEVIN-DCLEFLIDKAMVSETEDIE-------DASKLFLRGTRLGSLVSMLYIDP 509
Query: 342 ------FDTMKYIMQ-TPVNCG-LED------------ALHTVCHAEEIAWIQLRRNEKK 381
D K I + T N G LED LH VC ++ + LR +
Sbjct: 510 LSGSKIVDGFKDIGKSTGGNMGSLEDDKGDDITVTDMTLLHLVCSTPDMRQLYLRNTDYT 569
Query: 382 LLN---VINIDKDGRLRFHINGDK----------GKRKKRIQTREEKIFVLANDCL---- 424
++N V + D+ FH DK G+ K + E V A D
Sbjct: 570 IVNEYIVAHSDE-----FHEIPDKLKETDYEWFMGEVKTAMLLEEWVTEVSAEDITRHFN 624
Query: 425 IGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDS 484
+G+ +H L+ T + + +++A+ + V + A SL +R+ S
Sbjct: 625 VGEGDIHALADTSEW--LMHAAAKLAELL------------GVEYSSHAYSLEKRIRYGS 670
Query: 485 PYLLKQLPGI---GMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPF 531
L +L GI G V A+ L++ G S L AD + + G K +
Sbjct: 671 GLDLMELVGIRGVGRVRARKLYNAGFVSVAKLKGADISVLSKLVGPKVAY 720
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 115/227 (50%), Gaps = 21/227 (9%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNV--------PVQ---GIK-----RFGEEMR---PVKLT 55
+++ +A+SAT+ N ++AEWL+ P++ G+ FG+ + PV+ T
Sbjct: 172 NLQVVALSATVGNAGEMAEWLDAELVDSSWRPIELRKGVHYGQALHFGDGTQQELPVQRT 231
Query: 56 TKVFDILMQYS--RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLRE 113
K + +++ + G S LVF ++R+ A+ AA++L++T + ++ E +R
Sbjct: 232 EKPTEAVVRETLDEGGSTLVFVNSRRNAEGAAKRLAKTTVDGLDADERAALSSLAEEIRA 291
Query: 114 ASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAH 173
S + + + + G +H+ G + R+L+E F ++ +C T TLA G+N PA
Sbjct: 292 VSDTETSDDLADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIKTICATPTLAAGVNTPAR 351
Query: 174 TVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220
VV++ + ++ + G + QM GRAGRP + G +++
Sbjct: 352 RVVVRDWRRYSGDAGGMQPLSVLEVHQMMGRAGRPGRDPYGEAVLLA 398
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 106/243 (43%), Gaps = 39/243 (16%)
Query: 4 CNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-FDIL 62
NP++++ +A+SATI N E +A WL+ + + RP+ L V +
Sbjct: 169 LNPDLQT--------VALSATIGNAEALATWLDAGL-----VDSDWRPIDLQKGVHYGQA 215
Query: 63 MQYSRGK-------------------------SALVFCSTRKGAQEAAQQLSQTAMTYGY 97
+ G S LVF ++R+ A+ AA +L+ T +
Sbjct: 216 LHLEDGSQQRLSVQNNEKQTAAIVRDTLEDDGSTLVFVNSRRNAEAAAGRLANTVRPHLS 275
Query: 98 SNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQV 157
+ + + E +R+ S + + + + G +H+ GL R L+E F V+V
Sbjct: 276 TEERDQLADIAEEIRDVSDTETSDDLADAVADGAAFHHAGLSRGHRELVEDAFRDRLVKV 335
Query: 158 LCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI 217
+C T TLA G+N P+ VV++ + ++ G + QM GRAGRP + G +
Sbjct: 336 VCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEVHQMMGRAGRPGLDPYGEAV 395
Query: 218 IMT 220
++
Sbjct: 396 LIA 398
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 135/283 (47%), Gaps = 31/283 (10%)
Query: 47 EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE 106
++M P +L V +++ YS LVFC ++K + A+ L + S ++ RE
Sbjct: 519 KKMDPDRLVALVTEVIPNYS----CLVFCPSKKNCENVAEMLCKF-----LSKDYLNHRE 569
Query: 107 QQE-----RLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161
+++ LR ++ + +G+ YH+ GL ++R L+E + G + +L T
Sbjct: 570 KEKCEVIKSLRNIGNGKVCPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCT 629
Query: 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTR 221
+TLA G+NLPA V++++ N +++ R+ QM GRAGR + G I++ +
Sbjct: 630 STLAAGVNLPARRVILRAPYVANT----FLK--RNQYKQMVGRAGRAGIDTAGESILLLQ 683
Query: 222 RETVHLYENLLNG-CEMVESQLLSCVTEHLTAEIVQMTVSDITQAI----EWMKCSYLYV 276
+ L++G E S L+ T+ + A + + I ++ ++M ++ V
Sbjct: 684 EKDKQQVLELISGPLETCCSHLVEEFTKGIQALFLSLIGLKIAASLGDIYQFMSGTFFGV 743
Query: 277 RMKKNPQNYSVRKVISRDRIEKHMQEVCVQK-----VDELSCH 314
+ K + S+ + I+ D +E ++ +QK + L CH
Sbjct: 744 QQKILLKEKSLWE-ITVDALEHLTEKGLLQKDSCGDNEGLECH 785
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 11/159 (6%)
Query: 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQS-- 125
G + +VF +RK + A L + +K + A LS D+++
Sbjct: 373 GLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAI---AQLSPEDQKLPQIL 429
Query: 126 ----YILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQ 181
+ G+G H+ GL + IE LF +G V+VL T T + G+N+PA TVV S +
Sbjct: 430 NILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSAR 489
Query: 182 YFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220
F+ Y+ +QM GRAGR +D GTVI+M
Sbjct: 490 KFDGSDNRYITS--GEYIQMAGRAGRRGKDDRGTVILMV 526
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 122 QMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQ 181
+ +S + G+ H+GGL + LIE LF KG ++VL T T A G+NLP TV+ S +
Sbjct: 683 KTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIR 742
Query: 182 YFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220
+ GL E QM GRAGR + TGTVI+M
Sbjct: 743 KHDG-NGL-RELTPGEFTQMAGRAGRRGLDSTGTVIVMA 779
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 110/272 (40%), Gaps = 78/272 (28%)
Query: 15 SVRFLAVSATIPNIEDIAEWLN----------------VPVQ---------GIKRFGEEM 49
++RF+ +SAT+PN A W++ P+Q GI +E
Sbjct: 262 AIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEK 321
Query: 50 RPVKLTT--KVFDILMQYSRGKS----------------------------ALVFCSTRK 79
K KV ++L +R ++ +VFC ++K
Sbjct: 322 NKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKK 381
Query: 80 GAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREA------SLSCSDK------QMQSYI 127
+ A Q + + D E +E + E LS D+ +M+S +
Sbjct: 382 ECEINAHQFGKLDLN---------DTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLL 432
Query: 128 LYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEK 187
L G+G H+ GL + L+E LF +G V++L T T + G+N+PA TV+ Q F+
Sbjct: 433 LRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNN 492
Query: 188 GLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219
++ +QM GRAGR + G I++
Sbjct: 493 FRWL--TSGEYMQMSGRAGRRGIDTKGLSIVI 522
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 27/146 (18%)
Query: 114 ASLSCSDKQ------MQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHG 167
A L SD+Q M + G+G H+ G+ + ++E LF +G V+VL T T A G
Sbjct: 609 ARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMG 668
Query: 168 INLPAHTVVIKSTQYFNKEKGLYMEHDRSTI--------LQMCGRAGRPPFNDTGTVIIM 219
+N+PA TVV S + +HD ST +QM GRAGR + TGTVI++
Sbjct: 669 VNMPARTVVFDSMR----------KHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILL 718
Query: 220 TR---RETVHLYENLLNGCEMVESQL 242
+ E L+ ++ ++SQ
Sbjct: 719 CKGRVPEMADLHRMMMGKPSQLQSQF 744
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 21/208 (10%)
Query: 47 EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE 106
++M P L V +++ YS LVFC ++K + A+ + + S ++K +E
Sbjct: 560 KKMDPDHLVALVTEVIPNYS----CLVFCPSKKNCENVAEMICKF-----LSKEYLKHKE 610
Query: 107 QQE-----RLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161
+++ L+ ++ I +GV YH+ GL +R L+E + G + + T
Sbjct: 611 KEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCT 670
Query: 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTG-TVIIMT 220
+TLA G+NLPA V++++ Y KE +++ R+ QM GRAGR + G +++I+
Sbjct: 671 STLAAGVNLPARRVILRAP-YVAKE---FLK--RNQYKQMIGRAGRAGIDTIGESILILQ 724
Query: 221 RRETVHLYENLLNGCEMVESQLLSCVTE 248
++ + E + E S L+ T+
Sbjct: 725 EKDKQQVLELITKPLENCYSHLVQEFTK 752
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 122 QMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQ 181
+M+ + G+ H+GGL + ++E LF +G V+VL T T A G+N+PA +VV TQ
Sbjct: 607 RMREMLSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQ 666
Query: 182 YFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223
+ + + Q GRAGR + TGTVII++R E
Sbjct: 667 KHDGRN--FRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSE 706
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL 189
G+G H+GGL + IE LF +G ++ L T T A GIN+PA TV+ + + F+ +
Sbjct: 451 GIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFR 510
Query: 190 YMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220
++ +QM GRAGR +D G VI+M
Sbjct: 511 WISS--GEYIQMSGRAGRRGMDDRGIVILMV 539
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 134/296 (45%), Gaps = 46/296 (15%)
Query: 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF--------------- 59
+ + + +SAT+ N E+IA WLN K +E RPV+L ++
Sbjct: 168 NAQIVGLSATVGNPEEIANWLNA-----KLVTDEWRPVELKKGIYLENEINYINNQDSQK 222
Query: 60 ---------------DILMQYSRGK-SALVFCSTRKGAQEAAQQLSQTA-MTYGYSNPFI 102
D+++ K S L+FC++++ A +++ + T ++ N
Sbjct: 223 KSFKAVKSISRNNLTDLIVDSVNEKGSCLIFCNSKRNAVGESKKHNLTKYLSKAELNDLN 282
Query: 103 KDREQQERLREA-SLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161
E+ + E + +C K + I GV +H+ GL + R +E F ++V+C T
Sbjct: 283 SISEEILSILETPTETC--KSLSECIKKGVAFHHAGLTYQHRKAVEEGFRNKVIKVICCT 340
Query: 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTR 221
TL+ G+NLP +I+ + ++ + GL ++ + I Q GRAGRP + G II+ +
Sbjct: 341 PTLSAGLNLPCRRAIIRDIRRYS-QNGL-IDIPKLEIHQCIGRAGRPGLDPYGEGIILAK 398
Query: 222 RE--TVHLYENLLNGCEMVESQLLS--CVTEHLTAEIVQMTVSDITQAIEWMKCSY 273
E + L E + S+L + + H+ I + + ++ I ++K ++
Sbjct: 399 NEKDVEKAFLALTGPLENIYSKLSNQKVLRVHILGLIATLEIKSTSELINFIKNTF 454
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,396,734
Number of Sequences: 539616
Number of extensions: 15463969
Number of successful extensions: 39524
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 39192
Number of HSP's gapped (non-prelim): 272
length of query: 1034
length of database: 191,569,459
effective HSP length: 128
effective length of query: 906
effective length of database: 122,498,611
effective search space: 110983741566
effective search space used: 110983741566
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)