Query 001668
Match_columns 1034
No_of_seqs 498 out of 3220
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0951 RNA helicase BRR2, DEA 100.0 4E-92 8.6E-97 836.8 38.8 641 10-684 469-1134(1674)
2 KOG0952 DNA/RNA helicase MER3/ 100.0 4.1E-92 8.9E-97 831.2 34.2 855 1-1018 261-1222(1230)
3 PRK02362 ski2-like helicase; P 100.0 1.1E-63 2.4E-68 621.6 41.2 492 13-541 169-705 (737)
4 PRK00254 ski2-like helicase; P 100.0 2.4E-61 5.1E-66 599.4 43.1 498 11-540 165-699 (720)
5 PRK01172 ski2-like helicase; P 100.0 5.1E-58 1.1E-62 566.8 40.5 465 13-542 167-668 (674)
6 COG1204 Superfamily II helicas 100.0 2.8E-50 6.1E-55 492.8 21.3 495 15-541 180-727 (766)
7 smart00611 SEC63 Domain of unk 100.0 4.4E-45 9.6E-50 411.9 32.1 305 326-645 2-311 (312)
8 PF02889 Sec63: Sec63 Brl doma 100.0 4.7E-45 1E-49 412.0 31.6 302 328-645 1-314 (314)
9 KOG0951 RNA helicase BRR2, DEA 100.0 9.8E-41 2.1E-45 399.0 21.1 314 6-348 1280-1613(1674)
10 KOG4434 Molecular chaperone SE 100.0 2.5E-37 5.5E-42 329.9 24.7 310 348-680 4-499 (520)
11 KOG0950 DNA polymerase theta/e 100.0 6.8E-33 1.5E-37 329.2 22.1 489 15-526 377-934 (1008)
12 KOG0948 Nuclear exosomal RNA h 100.0 2.3E-28 4.9E-33 281.9 14.5 255 13-283 264-597 (1041)
13 COG1202 Superfamily II helicas 100.0 8.3E-27 1.8E-31 263.1 26.6 289 14-381 371-692 (830)
14 KOG0947 Cytoplasmic exosomal R 99.9 3.1E-27 6.8E-32 278.5 17.4 225 13-247 432-750 (1248)
15 PRK13767 ATP-dependent helicas 99.9 8.8E-24 1.9E-28 267.0 23.2 231 7-278 199-460 (876)
16 PRK09751 putative ATP-dependen 99.9 1.5E-23 3.2E-28 269.1 23.9 253 6-277 150-446 (1490)
17 TIGR03817 DECH_helic helicase/ 99.9 2.5E-22 5.3E-27 249.4 23.6 183 2-224 181-387 (742)
18 COG4581 Superfamily II RNA hel 99.9 2.1E-22 4.6E-27 247.7 14.8 251 12-274 257-587 (1041)
19 COG1201 Lhr Lhr-like helicases 99.9 1.3E-20 2.7E-25 229.5 24.1 225 4-277 173-423 (814)
20 KOG0333 U5 snRNP-like RNA heli 99.9 1.8E-21 4E-26 218.7 13.8 165 16-229 453-630 (673)
21 KOG0331 ATP-dependent RNA heli 99.9 3.9E-21 8.5E-26 222.7 17.0 170 7-225 262-450 (519)
22 KOG0328 Predicted ATP-dependen 99.9 6E-21 1.3E-25 200.4 16.1 172 12-231 197-381 (400)
23 TIGR00614 recQ_fam ATP-depende 99.9 8.3E-21 1.8E-25 226.1 18.8 173 14-234 161-344 (470)
24 KOG0338 ATP-dependent RNA heli 99.9 4.3E-21 9.4E-26 214.8 15.2 192 8-247 351-557 (691)
25 KOG0330 ATP-dependent RNA heli 99.9 4.5E-21 9.7E-26 209.5 14.9 174 10-232 230-416 (476)
26 PLN03137 ATP-dependent DNA hel 99.8 1.2E-20 2.6E-25 233.7 18.6 172 14-234 615-798 (1195)
27 PLN00206 DEAD-box ATP-dependen 99.8 6.3E-21 1.4E-25 229.4 14.6 171 14-232 299-484 (518)
28 PRK10590 ATP-dependent RNA hel 99.8 8.8E-21 1.9E-25 225.1 15.2 174 8-229 173-358 (456)
29 TIGR01970 DEAH_box_HrpB ATP-de 99.8 2.1E-20 4.6E-25 232.4 18.8 281 8-366 139-440 (819)
30 PRK11776 ATP-dependent RNA hel 99.8 2.1E-20 4.6E-25 222.3 17.2 174 7-228 170-354 (460)
31 PTZ00424 helicase 45; Provisio 99.8 1.5E-20 3.2E-25 219.5 13.9 173 10-231 196-382 (401)
32 COG0513 SrmB Superfamily II DN 99.8 2.1E-20 4.6E-25 223.8 15.3 173 10-230 200-388 (513)
33 PRK11057 ATP-dependent DNA hel 99.8 7.9E-20 1.7E-24 223.6 20.0 172 14-235 173-355 (607)
34 KOG0326 ATP-dependent RNA heli 99.8 2.3E-20 5.1E-25 198.8 12.8 169 7-225 250-431 (459)
35 PTZ00110 helicase; Provisional 99.8 7.2E-20 1.6E-24 221.2 17.9 176 6-229 299-490 (545)
36 PRK11131 ATP-dependent RNA hel 99.8 7E-20 1.5E-24 231.9 18.3 291 14-381 217-534 (1294)
37 KOG0332 ATP-dependent RNA heli 99.8 1.3E-19 2.8E-24 197.1 17.5 173 10-224 259-444 (477)
38 PRK11192 ATP-dependent RNA hel 99.8 9.8E-20 2.1E-24 215.0 17.3 172 9-228 172-357 (434)
39 PRK04537 ATP-dependent RNA hel 99.8 3.8E-20 8.2E-25 224.4 13.8 162 15-225 192-366 (572)
40 PRK01297 ATP-dependent RNA hel 99.8 1E-19 2.2E-24 217.2 14.7 164 15-226 270-445 (475)
41 TIGR01389 recQ ATP-dependent D 99.8 1.9E-19 4.1E-24 220.4 17.2 173 15-237 162-345 (591)
42 PRK11634 ATP-dependent RNA hel 99.8 2.2E-19 4.8E-24 219.2 17.7 175 8-230 173-359 (629)
43 PRK04837 ATP-dependent RNA hel 99.8 6.9E-20 1.5E-24 215.6 12.7 166 15-229 190-368 (423)
44 PRK11664 ATP-dependent RNA hel 99.8 1.1E-19 2.3E-24 226.6 14.4 263 9-350 143-427 (812)
45 TIGR01967 DEAH_box_HrpA ATP-de 99.8 1.1E-18 2.5E-23 221.8 22.0 289 13-380 209-524 (1283)
46 COG0514 RecQ Superfamily II DN 99.8 1E-18 2.2E-23 206.3 18.7 184 4-237 156-351 (590)
47 KOG0342 ATP-dependent RNA heli 99.8 6.2E-19 1.3E-23 198.2 15.8 172 8-228 254-442 (543)
48 KOG0340 ATP-dependent RNA heli 99.8 1.8E-18 4E-23 187.2 15.4 169 13-231 182-369 (442)
49 COG5407 SEC63 Preprotein trans 99.8 2.7E-18 5.8E-23 189.4 14.1 274 339-653 226-553 (610)
50 KOG0923 mRNA splicing factor A 99.8 3E-18 6.6E-23 196.9 14.7 299 13-383 408-728 (902)
51 KOG0345 ATP-dependent RNA heli 99.7 7.8E-18 1.7E-22 188.0 13.5 179 8-234 181-374 (567)
52 KOG0924 mRNA splicing factor A 99.7 1.7E-17 3.8E-22 190.7 15.4 304 13-388 498-823 (1042)
53 KOG0343 RNA Helicase [RNA proc 99.7 2.1E-17 4.5E-22 187.0 15.4 181 7-234 238-433 (758)
54 KOG0922 DEAH-box RNA helicase 99.7 2.2E-17 4.8E-22 192.4 14.8 292 13-380 193-508 (674)
55 KOG0341 DEAD-box protein abstr 99.7 2.1E-17 4.6E-22 179.8 12.5 164 13-224 355-529 (610)
56 KOG0336 ATP-dependent RNA heli 99.7 1.6E-17 3.4E-22 182.0 11.5 173 10-231 393-580 (629)
57 PHA02653 RNA helicase NPH-II; 99.7 1.1E-16 2.5E-21 195.1 19.1 170 15-224 321-515 (675)
58 KOG0335 ATP-dependent RNA heli 99.7 9.6E-17 2.1E-21 183.6 14.6 164 13-224 260-445 (482)
59 KOG0949 Predicted helicase, DE 99.7 1.7E-16 3.8E-21 188.7 13.2 93 120-221 954-1046(1330)
60 KOG0348 ATP-dependent RNA heli 99.7 1.5E-16 3.3E-21 179.7 10.3 141 66-234 423-564 (708)
61 COG1643 HrpA HrpA-like helicas 99.7 7.9E-16 1.7E-20 189.3 16.1 286 6-367 186-493 (845)
62 TIGR01587 cas3_core CRISPR-ass 99.7 8E-16 1.7E-20 177.2 15.3 116 62-224 216-337 (358)
63 TIGR00580 mfd transcription-re 99.7 9.9E-16 2.1E-20 192.8 16.7 165 13-223 597-770 (926)
64 PRK10689 transcription-repair 99.6 1.1E-15 2.4E-20 196.1 17.1 166 12-223 745-919 (1147)
65 KOG0344 ATP-dependent RNA heli 99.6 6E-16 1.3E-20 178.1 12.6 166 14-228 320-500 (593)
66 KOG0350 DEAD-box ATP-dependent 99.6 7.1E-16 1.5E-20 173.5 12.6 175 13-234 358-551 (620)
67 KOG0327 Translation initiation 99.6 8.9E-16 1.9E-20 169.1 12.9 176 7-233 192-380 (397)
68 KOG0339 ATP-dependent RNA heli 99.6 5.9E-16 1.3E-20 173.7 11.5 175 5-227 391-579 (731)
69 PRK10917 ATP-dependent DNA hel 99.6 2.5E-15 5.5E-20 186.1 18.0 82 129-221 506-587 (681)
70 TIGR00643 recG ATP-dependent D 99.6 3.7E-15 7.9E-20 183.5 18.0 82 129-221 483-564 (630)
71 KOG4284 DEAD box protein [Tran 99.6 1.1E-15 2.3E-20 175.5 11.7 168 9-224 193-380 (980)
72 KOG0351 ATP-dependent DNA heli 99.6 4.5E-15 9.7E-20 184.7 14.5 182 5-235 411-604 (941)
73 KOG0347 RNA helicase [RNA proc 99.6 4.4E-15 9.5E-20 168.5 12.6 158 68-273 463-632 (731)
74 TIGR02621 cas3_GSU0051 CRISPR- 99.6 4.4E-14 9.5E-19 173.7 16.9 145 15-210 205-379 (844)
75 PRK12898 secA preprotein trans 99.5 1.4E-13 3E-18 166.0 17.8 158 17-224 410-587 (656)
76 KOG0334 RNA helicase [RNA proc 99.5 7.4E-14 1.6E-18 170.1 14.1 169 8-224 539-721 (997)
77 KOG0352 ATP-dependent DNA heli 99.5 2.3E-13 4.9E-18 150.5 13.3 180 4-233 166-372 (641)
78 cd00079 HELICc Helicase superf 99.5 2.4E-13 5.3E-18 132.3 11.6 114 58-219 17-131 (131)
79 PRK09200 preprotein translocas 99.5 5.8E-13 1.3E-17 163.8 16.4 154 17-224 365-542 (790)
80 TIGR03714 secA2 accessory Sec 99.4 1.1E-12 2.3E-17 160.1 16.0 154 16-224 360-538 (762)
81 KOG0925 mRNA splicing factor A 99.4 1.6E-12 3.4E-17 146.0 15.4 279 13-366 189-492 (699)
82 PF00271 Helicase_C: Helicase 99.4 3.3E-13 7.1E-18 120.5 7.7 72 128-209 7-78 (78)
83 COG1205 Distinct helicase fami 99.4 6.4E-13 1.4E-17 166.6 12.4 184 1-224 218-423 (851)
84 KOG0920 ATP-dependent RNA heli 99.4 1E-12 2.3E-17 161.4 13.9 233 66-366 411-651 (924)
85 PRK05298 excinuclease ABC subu 99.4 4.3E-12 9.4E-17 156.4 17.0 121 59-223 436-557 (652)
86 KOG0337 ATP-dependent RNA heli 99.4 5.7E-13 1.2E-17 147.7 8.1 175 6-229 186-374 (529)
87 TIGR00963 secA preprotein tran 99.4 7.5E-12 1.6E-16 152.0 18.4 154 17-224 342-518 (745)
88 KOG0346 RNA helicase [RNA proc 99.4 1.2E-12 2.6E-17 145.8 10.5 171 5-224 191-411 (569)
89 KOG0926 DEAH-box RNA helicase 99.4 9.7E-13 2.1E-17 154.5 9.0 188 131-359 607-802 (1172)
90 TIGR00631 uvrb excinuclease AB 99.4 3.3E-12 7.2E-17 156.6 14.0 122 59-225 432-555 (655)
91 KOG0353 ATP-dependent DNA heli 99.3 1.2E-12 2.5E-17 142.6 7.6 162 13-224 248-468 (695)
92 KOG0349 Putative DEAD-box RNA 99.3 1.2E-12 2.6E-17 144.7 7.3 111 67-222 504-614 (725)
93 PRK12906 secA preprotein trans 99.3 6.7E-12 1.4E-16 153.6 14.4 179 17-249 377-592 (796)
94 COG1111 MPH1 ERCC4-like helica 99.3 3.4E-12 7.4E-17 145.5 10.9 117 67-223 365-481 (542)
95 TIGR03158 cas3_cyano CRISPR-as 99.3 5.6E-12 1.2E-16 145.2 12.7 87 67-206 271-357 (357)
96 PRK04914 ATP-dependent helicas 99.3 2.9E-11 6.4E-16 152.3 18.1 106 67-219 492-599 (956)
97 PHA02558 uvsW UvsW helicase; P 99.3 1.4E-11 3.1E-16 148.0 13.8 107 66-219 342-449 (501)
98 TIGR00595 priA primosomal prot 99.3 1.2E-10 2.6E-15 139.6 18.2 97 129-227 285-385 (505)
99 COG1200 RecG RecG-like helicas 99.2 6.8E-11 1.5E-15 140.2 15.1 181 6-224 402-592 (677)
100 PRK12900 secA preprotein trans 99.2 7.1E-11 1.5E-15 145.5 13.8 154 17-224 535-712 (1025)
101 KOG0354 DEAD-box like helicase 99.2 7.8E-11 1.7E-15 141.6 13.0 120 65-223 410-529 (746)
102 PRK09694 helicase Cas3; Provis 99.2 2E-10 4.4E-15 144.0 16.5 101 64-210 556-664 (878)
103 smart00490 HELICc helicase sup 99.2 5.6E-11 1.2E-15 105.7 7.4 72 128-209 11-82 (82)
104 COG4098 comFA Superfamily II D 99.2 3.3E-10 7.1E-15 123.5 14.6 122 58-223 294-416 (441)
105 TIGR00603 rad25 DNA repair hel 99.1 3.4E-10 7.4E-15 138.5 13.2 94 67-211 495-590 (732)
106 PRK13766 Hef nuclease; Provisi 99.1 3.2E-10 7E-15 143.7 13.4 116 66-222 363-478 (773)
107 PRK05580 primosome assembly pr 99.1 9.9E-10 2.2E-14 136.3 17.2 99 129-229 453-555 (679)
108 PRK14701 reverse gyrase; Provi 99.1 2.2E-10 4.7E-15 151.4 9.1 168 14-234 267-467 (1638)
109 COG1197 Mfd Transcription-repa 99.0 4.6E-09 9.9E-14 131.2 16.8 168 5-223 733-913 (1139)
110 KOG4150 Predicted ATP-dependen 98.9 6.3E-09 1.4E-13 118.9 13.5 177 13-229 449-647 (1034)
111 PRK09401 reverse gyrase; Revie 98.9 2.3E-09 5E-14 138.9 10.7 146 15-207 268-430 (1176)
112 COG0556 UvrB Helicase subunit 98.9 2.6E-08 5.7E-13 114.4 14.4 165 14-223 385-557 (663)
113 PRK13104 secA preprotein trans 98.8 3E-08 6.6E-13 122.6 15.0 179 17-249 381-625 (896)
114 KOG0953 Mitochondrial RNA heli 98.8 1.4E-08 2.9E-13 116.9 10.8 179 14-234 306-487 (700)
115 PRK12904 preprotein translocas 98.8 3.6E-08 7.8E-13 121.8 15.2 179 17-249 367-611 (830)
116 KOG0329 ATP-dependent RNA heli 98.8 4.3E-09 9.3E-14 110.4 5.8 57 158-226 302-358 (387)
117 PRK13107 preprotein translocas 98.8 3.7E-08 8E-13 121.5 14.0 179 17-249 386-629 (908)
118 COG1203 CRISPR-associated heli 98.7 7.2E-08 1.6E-12 121.0 12.9 162 14-224 369-551 (733)
119 TIGR01054 rgy reverse gyrase. 98.7 6.2E-08 1.4E-12 126.0 10.8 81 58-180 318-406 (1171)
120 KOG0952 DNA/RNA helicase MER3/ 98.6 9.5E-09 2.1E-13 125.3 0.5 133 10-146 1078-1229(1230)
121 PRK11448 hsdR type I restricti 98.3 2.7E-06 5.9E-11 110.3 12.7 102 68-209 698-801 (1123)
122 COG1061 SSL2 DNA or RNA helica 98.3 5.1E-06 1.1E-10 98.7 13.0 95 67-208 282-376 (442)
123 TIGR01407 dinG_rel DnaQ family 98.2 2E-05 4.4E-10 101.0 15.3 183 15-234 595-827 (850)
124 PLN03142 Probable chromatin-re 98.1 1.5E-05 3.2E-10 102.0 11.1 84 129-222 512-598 (1033)
125 PRK12903 secA preprotein trans 97.9 0.00027 6E-09 87.4 16.6 178 17-249 363-575 (925)
126 PRK12326 preprotein translocas 97.8 0.00031 6.6E-09 85.9 14.8 178 17-249 364-581 (764)
127 PRK12899 secA preprotein trans 97.7 0.00045 9.7E-09 86.5 14.1 180 16-249 504-719 (970)
128 PRK12901 secA preprotein trans 97.5 0.0009 1.9E-08 84.1 13.2 179 17-249 565-779 (1112)
129 PRK08074 bifunctional ATP-depe 97.2 0.0024 5.1E-08 82.8 13.8 185 14-234 671-906 (928)
130 PRK13103 secA preprotein trans 97.2 0.0023 5E-08 80.2 13.0 154 17-224 386-592 (913)
131 COG1199 DinG Rad3-related DNA 97.1 0.0019 4.1E-08 80.9 11.3 127 68-234 479-629 (654)
132 PRK11747 dinG ATP-dependent DN 96.8 0.017 3.6E-07 72.8 15.4 179 15-234 456-687 (697)
133 PRK12902 secA preprotein trans 96.8 0.029 6.3E-07 70.3 16.9 72 16-91 375-462 (939)
134 COG1198 PriA Primosomal protei 96.7 0.016 3.6E-07 72.0 13.8 86 143-230 523-610 (730)
135 CHL00122 secA preprotein trans 96.7 0.047 1E-06 68.5 17.7 112 17-170 361-490 (870)
136 TIGR00348 hsdR type I site-spe 96.6 0.018 3.9E-07 72.2 13.2 117 68-208 514-634 (667)
137 PRK07246 bifunctional ATP-depe 96.5 0.053 1.2E-06 69.4 17.2 179 14-234 572-796 (820)
138 PF14520 HHH_5: Helix-hairpin- 96.5 0.0027 5.8E-08 54.0 3.7 53 488-540 7-59 (60)
139 PF13307 Helicase_C_2: Helicas 96.4 0.005 1.1E-07 63.5 5.9 126 68-231 9-159 (167)
140 TIGR00596 rad1 DNA repair prot 96.2 0.21 4.5E-06 63.5 19.7 52 488-541 759-810 (814)
141 COG4096 HsdR Type I site-speci 96.1 0.017 3.8E-07 71.1 8.7 99 68-208 426-525 (875)
142 COG1110 Reverse gyrase [DNA re 95.9 0.027 5.8E-07 70.6 9.6 121 14-177 275-411 (1187)
143 TIGR00604 rad3 DNA repair heli 95.8 0.076 1.6E-06 67.2 13.1 174 15-220 441-672 (705)
144 KOG0385 Chromatin remodeling c 94.9 0.21 4.6E-06 61.1 12.2 82 131-222 514-598 (971)
145 TIGR02562 cas3_yersinia CRISPR 94.7 0.11 2.4E-06 66.4 9.6 100 71-213 759-884 (1110)
146 KOG1123 RNA polymerase II tran 94.6 0.098 2.1E-06 61.0 8.1 73 127-208 561-634 (776)
147 KOG0391 SNF2 family DNA-depend 94.4 0.16 3.4E-06 64.4 9.7 68 134-205 1306-1375(1958)
148 KOG0390 DNA repair protein, SN 93.9 0.31 6.8E-06 60.9 11.0 82 126-217 617-701 (776)
149 KOG0392 SNF2 family DNA-depend 93.7 0.24 5.2E-06 63.3 9.4 110 68-222 1340-1454(1549)
150 TIGR03117 cas_csf4 CRISPR-asso 93.3 1.6 3.6E-05 54.2 15.9 117 67-222 469-616 (636)
151 PRK12766 50S ribosomal protein 92.5 0.2 4.3E-06 53.7 5.5 54 488-541 5-58 (232)
152 PRK10917 ATP-dependent DNA hel 92.2 0.49 1.1E-05 59.8 9.6 86 63-180 305-391 (681)
153 KOG0384 Chromodomain-helicase 92.0 0.48 1E-05 60.8 8.8 111 66-222 697-810 (1373)
154 smart00492 HELICc3 helicase su 91.5 0.59 1.3E-05 46.9 7.4 87 131-219 24-135 (141)
155 COG0553 HepA Superfamily II DN 90.8 0.81 1.7E-05 59.1 9.7 112 65-222 706-821 (866)
156 KOG0388 SNF2 family DNA-depend 90.6 0.98 2.1E-05 55.0 9.0 111 65-221 1041-1153(1185)
157 KOG0921 Dosage compensation co 90.2 0.52 1.1E-05 58.6 6.5 127 68-226 643-777 (1282)
158 PF11731 Cdd1: Pathogenicity l 90.2 0.33 7.2E-06 44.9 3.8 35 488-522 14-48 (93)
159 TIGR00595 priA primosomal prot 89.9 3 6.4E-05 50.9 12.8 80 65-180 22-101 (505)
160 PRK04301 radA DNA repair and r 89.7 0.47 1E-05 54.1 5.5 54 488-541 8-61 (317)
161 PRK14873 primosome assembly pr 89.6 3.5 7.5E-05 51.8 13.3 123 65-231 185-311 (665)
162 TIGR02236 recomb_radA DNA repa 89.4 0.53 1.2E-05 53.5 5.6 53 488-540 1-53 (310)
163 PRK05580 primosome assembly pr 89.2 3.9 8.5E-05 51.7 13.6 79 66-180 188-266 (679)
164 COG0653 SecA Preprotein transl 88.7 1.1 2.4E-05 56.5 8.0 108 63-221 424-543 (822)
165 TIGR00643 recG ATP-dependent D 88.7 1.4 2.9E-05 55.3 9.0 86 63-180 279-365 (630)
166 COG4889 Predicted helicase [Ge 87.3 0.52 1.1E-05 58.5 3.8 79 130-218 499-583 (1518)
167 TIGR00580 mfd transcription-re 87.3 1.7 3.7E-05 56.5 8.8 84 64-179 496-580 (926)
168 PF02399 Herpes_ori_bp: Origin 86.6 4.2 9E-05 51.3 11.1 113 59-222 272-387 (824)
169 COG1110 Reverse gyrase [DNA re 86.5 1.7 3.6E-05 55.4 7.6 70 66-165 123-192 (1187)
170 KOG0389 SNF2 family DNA-depend 85.8 2.6 5.6E-05 52.3 8.6 106 127-242 800-908 (941)
171 smart00491 HELICc2 helicase su 85.2 1.7 3.7E-05 43.6 5.8 85 134-220 24-137 (142)
172 KOG1000 Chromatin remodeling p 84.7 4.8 0.0001 47.6 9.6 85 66-186 490-576 (689)
173 PF12826 HHH_2: Helix-hairpin- 84.5 0.97 2.1E-05 39.0 3.2 49 489-542 6-54 (64)
174 PF04408 HA2: Helicase associa 82.6 0.77 1.7E-05 43.3 2.0 64 307-376 2-65 (102)
175 PRK10689 transcription-repair 82.1 4.6 9.9E-05 53.9 9.4 82 65-178 646-728 (1147)
176 COG1198 PriA Primosomal protei 81.4 3.3 7.3E-05 52.1 7.4 105 64-206 241-348 (730)
177 TIGR01054 rgy reverse gyrase. 81.2 3.5 7.6E-05 55.1 7.9 68 67-163 120-187 (1171)
178 PF13871 Helicase_C_4: Helicas 80.5 2.2 4.8E-05 47.6 4.9 64 145-210 52-115 (278)
179 PF10391 DNA_pol_lambd_f: Fing 80.4 1.4 3.1E-05 36.4 2.5 28 488-515 4-31 (52)
180 smart00847 HA2 Helicase associ 79.1 1.4 3E-05 40.4 2.3 55 307-366 2-57 (92)
181 PRK14873 primosome assembly pr 78.4 3.5 7.7E-05 51.7 6.3 73 142-220 460-536 (665)
182 KOG0387 Transcription-coupled 77.9 12 0.00026 46.8 10.2 81 131-222 574-658 (923)
183 TIGR01954 nusA_Cterm_rpt trans 77.6 4.7 0.0001 32.5 4.8 46 494-539 1-46 (50)
184 PRK07758 hypothetical protein; 77.3 4.9 0.00011 37.3 5.2 51 491-541 39-89 (95)
185 PRK14701 reverse gyrase; Provi 75.8 6.4 0.00014 54.2 8.0 69 67-165 121-189 (1638)
186 PF04994 TfoX_C: TfoX C-termin 75.5 2.3 5E-05 38.6 2.6 34 488-521 5-38 (81)
187 COG0513 SrmB Superfamily II DN 75.1 8.2 0.00018 47.2 8.1 74 71-179 102-181 (513)
188 PTZ00035 Rad51 protein; Provis 74.8 4.3 9.3E-05 46.8 5.3 55 489-543 26-80 (337)
189 cd00141 NT_POLXc Nucleotidyltr 71.3 2.7 5.9E-05 47.8 2.6 29 488-516 87-115 (307)
190 TIGR02238 recomb_DMC1 meiotic 70.9 6.2 0.00014 45.0 5.3 55 489-543 4-58 (313)
191 smart00483 POLXc DNA polymeras 70.3 9.3 0.0002 44.1 6.6 31 488-518 91-121 (334)
192 TIGR02239 recomb_RAD51 DNA rep 69.4 7 0.00015 44.7 5.4 54 489-542 4-57 (316)
193 PLN03187 meiotic recombination 68.7 6.9 0.00015 45.2 5.1 55 488-542 33-87 (344)
194 PRK14133 DNA polymerase IV; Pr 67.6 9.8 0.00021 44.0 6.2 52 488-542 175-226 (347)
195 PF14229 DUF4332: Domain of un 67.4 4.2 9.1E-05 39.8 2.6 38 488-525 55-92 (122)
196 PF06862 DUF1253: Protein of u 67.1 98 0.0021 37.1 14.2 122 67-231 299-423 (442)
197 PRK03352 DNA polymerase IV; Va 67.1 9.7 0.00021 44.0 6.0 53 488-542 179-231 (346)
198 PRK03609 umuC DNA polymerase V 66.2 9.2 0.0002 45.5 5.7 53 488-543 181-233 (422)
199 cd01700 PolY_Pol_V_umuC umuC s 65.9 9.4 0.0002 44.0 5.6 52 488-542 178-229 (344)
200 PRK02406 DNA polymerase IV; Va 65.7 11 0.00024 43.5 6.1 53 488-543 170-222 (343)
201 PRK01216 DNA polymerase IV; Va 64.0 10 0.00023 44.0 5.4 52 488-541 180-231 (351)
202 cd00424 PolY Y-family of DNA p 62.1 12 0.00026 43.2 5.5 53 488-543 175-228 (343)
203 PRK03348 DNA polymerase IV; Pr 61.7 11 0.00024 45.3 5.3 54 488-543 182-235 (454)
204 PRK14973 DNA topoisomerase I; 60.6 11 0.00023 49.3 5.1 48 488-535 804-851 (936)
205 PRK03103 DNA polymerase IV; Re 60.5 15 0.00033 43.5 6.1 52 488-542 183-234 (409)
206 PRK03858 DNA polymerase IV; Va 60.2 13 0.00027 43.9 5.4 53 488-542 175-227 (396)
207 PRK02794 DNA polymerase IV; Pr 59.6 15 0.00032 43.7 5.9 53 488-543 211-263 (419)
208 PRK08609 hypothetical protein; 59.6 8.3 0.00018 47.8 3.8 30 488-517 90-120 (570)
209 PLN03186 DNA repair protein RA 59.4 13 0.00028 43.0 5.1 54 489-542 31-84 (342)
210 PRK02515 psbU photosystem II c 58.9 15 0.00033 36.2 4.6 31 487-517 62-93 (132)
211 cd03586 PolY_Pol_IV_kappa DNA 58.3 18 0.0004 41.3 6.2 53 488-543 173-225 (334)
212 PF03118 RNA_pol_A_CTD: Bacter 57.4 16 0.00035 31.8 4.1 47 488-539 14-60 (66)
213 PRK01810 DNA polymerase IV; Va 55.6 16 0.00035 43.1 5.3 52 488-542 181-232 (407)
214 KOG0347 RNA helicase [RNA proc 55.1 22 0.00047 43.0 5.9 60 71-166 266-325 (731)
215 cd01703 PolY_Pol_iota DNA Poly 54.7 20 0.00042 42.2 5.6 54 488-543 174-242 (379)
216 COG2251 Predicted nuclease (Re 54.7 18 0.00039 42.6 5.1 58 466-526 208-265 (474)
217 PF00633 HHH: Helix-hairpin-he 54.6 6.8 0.00015 28.6 1.1 23 481-503 6-28 (30)
218 PRK09401 reverse gyrase; Revie 54.6 30 0.00066 46.5 7.9 66 67-162 122-187 (1176)
219 cd01701 PolY_Rev1 DNA polymera 53.2 20 0.00044 42.4 5.5 54 488-543 224-279 (404)
220 PRK11634 ATP-dependent RNA hel 52.2 54 0.0012 41.3 9.2 78 67-179 73-156 (629)
221 PRK11192 ATP-dependent RNA hel 50.9 48 0.001 39.4 8.2 77 68-180 73-155 (434)
222 cd00268 DEADc DEAD-box helicas 50.0 49 0.0011 34.5 7.3 77 67-179 68-150 (203)
223 COG3743 Uncharacterized conser 49.0 27 0.00058 34.5 4.5 38 488-525 69-106 (133)
224 KOG1002 Nucleotide excision re 48.7 29 0.00063 41.3 5.5 80 131-220 665-746 (791)
225 PRK14670 uvrC excinuclease ABC 48.1 35 0.00076 42.2 6.5 53 488-541 516-568 (574)
226 PF14229 DUF4332: Domain of un 48.1 31 0.00066 33.8 4.9 32 492-523 1-32 (122)
227 PF11798 IMS_HHH: IMS family H 47.8 21 0.00045 26.4 2.8 29 476-507 4-32 (32)
228 KOG1832 HIV-1 Vpr-binding prot 47.6 16 0.00035 46.0 3.4 45 136-180 637-690 (1516)
229 PRK04537 ATP-dependent RNA hel 46.6 56 0.0012 40.6 8.1 75 69-179 85-166 (572)
230 PRK14667 uvrC excinuclease ABC 45.4 42 0.00092 41.5 6.6 50 488-539 516-565 (567)
231 PF12836 HHH_3: Helix-hairpin- 43.4 23 0.0005 30.5 2.9 30 487-516 15-49 (65)
232 PRK04837 ATP-dependent RNA hel 42.2 84 0.0018 37.3 8.5 76 68-179 83-164 (423)
233 COG1200 RecG RecG-like helicas 42.2 1.3E+02 0.0027 37.8 9.8 88 61-180 304-392 (677)
234 PF00270 DEAD: DEAD/DEAH box h 42.0 1.1E+02 0.0024 30.5 8.2 60 68-163 44-104 (169)
235 KOG0343 RNA Helicase [RNA proc 41.6 26 0.00056 42.4 3.8 76 67-179 140-222 (758)
236 PRK11776 ATP-dependent RNA hel 41.3 79 0.0017 37.9 8.1 78 68-180 72-155 (460)
237 KOG0701 dsRNA-specific nucleas 40.1 23 0.00049 48.3 3.4 57 143-209 343-399 (1606)
238 TIGR00614 recQ_fam ATP-depende 39.9 69 0.0015 38.7 7.3 61 67-163 50-110 (470)
239 TIGR00426 competence protein C 39.8 38 0.00082 29.4 3.8 30 487-516 17-52 (69)
240 PF09026 CENP-B_dimeris: Centr 39.1 16 0.00035 33.9 1.3 14 735-748 53-66 (101)
241 PRK10590 ATP-dependent RNA hel 38.8 1E+02 0.0022 37.1 8.5 74 70-179 77-156 (456)
242 TIGR01389 recQ ATP-dependent D 38.6 81 0.0018 39.3 7.9 34 130-163 79-112 (591)
243 cd03468 PolY_like DNA Polymera 37.3 42 0.00092 38.3 4.8 50 490-542 174-223 (335)
244 PF01835 A2M_N: MG2 domain; I 36.9 3E+02 0.0064 25.2 9.6 71 555-629 11-85 (99)
245 KOG1015 Transcription regulato 36.8 1.2E+02 0.0025 39.4 8.4 143 67-233 1141-1289(1567)
246 PRK01297 ATP-dependent RNA hel 36.7 95 0.0021 37.5 7.9 76 69-179 163-244 (475)
247 PRK14666 uvrC excinuclease ABC 36.5 51 0.0011 41.5 5.4 54 488-542 639-692 (694)
248 PRK14973 DNA topoisomerase I; 35.9 44 0.00095 43.9 5.0 43 488-530 879-921 (936)
249 KOG0331 ATP-dependent RNA heli 35.7 1.2E+02 0.0026 37.1 8.1 122 68-234 165-295 (519)
250 KOG1189 Global transcriptional 34.4 36 0.00079 42.4 3.6 18 67-84 93-110 (960)
251 TIGR03491 RecB family nuclease 33.1 46 0.00099 40.2 4.3 36 488-523 209-244 (457)
252 KOG0338 ATP-dependent RNA heli 33.1 1.6E+02 0.0034 35.7 8.3 75 69-179 253-334 (691)
253 PTZ00110 helicase; Provisional 32.9 1.2E+02 0.0026 37.4 8.0 76 68-179 203-284 (545)
254 PF04931 DNA_pol_phi: DNA poly 32.3 27 0.00059 45.0 2.3 8 415-422 415-422 (784)
255 PRK07956 ligA NAD-dependent DN 31.9 77 0.0017 40.1 6.1 53 488-540 447-500 (665)
256 KOG1832 HIV-1 Vpr-binding prot 31.8 44 0.00096 42.4 3.8 13 725-737 1461-1473(1516)
257 TIGR01259 comE comEA protein. 31.6 58 0.0013 31.8 4.0 30 487-516 69-103 (120)
258 TIGR00575 dnlj DNA ligase, NAD 30.9 84 0.0018 39.7 6.2 39 488-526 434-473 (652)
259 KOG4439 RNA polymerase II tran 30.9 3E+02 0.0065 34.7 10.4 56 131-186 773-831 (901)
260 COG1796 POL4 DNA polymerase IV 29.9 57 0.0012 37.1 3.9 44 473-517 81-125 (326)
261 KOG0772 Uncharacterized conser 29.3 60 0.0013 38.9 4.1 14 651-664 78-91 (641)
262 KOG2038 CAATT-binding transcri 29.3 34 0.00074 42.7 2.3 19 735-753 950-968 (988)
263 PTZ00205 DNA polymerase kappa; 29.1 76 0.0017 39.1 5.2 32 488-519 311-342 (571)
264 PRK14351 ligA NAD-dependent DN 28.9 89 0.0019 39.7 5.9 58 481-539 458-516 (689)
265 PRK14672 uvrC excinuclease ABC 28.4 1.1E+02 0.0025 38.4 6.6 51 488-539 610-660 (691)
266 COG0389 DinP Nucleotidyltransf 27.5 99 0.0021 36.0 5.6 53 488-543 178-230 (354)
267 COG1197 Mfd Transcription-repa 26.6 2E+02 0.0042 38.4 8.3 164 63-272 638-826 (1139)
268 smart00278 HhH1 Helix-hairpin- 26.2 53 0.0012 22.9 1.9 17 488-504 3-19 (26)
269 PHA02664 hypothetical protein; 26.1 75 0.0016 35.6 4.0 21 268-288 161-182 (534)
270 cd01702 PolY_Pol_eta DNA Polym 25.6 86 0.0019 36.6 4.7 54 488-543 184-240 (359)
271 PRK12278 50S ribosomal protein 25.2 74 0.0016 34.5 3.7 38 488-525 160-197 (221)
272 PRK12898 secA preprotein trans 24.8 2.3E+02 0.0049 35.9 8.3 74 64-176 140-213 (656)
273 PF10446 DUF2457: Protein of u 24.0 43 0.00093 39.5 1.7 30 744-773 121-150 (458)
274 KOG2093 Translesion DNA polyme 22.8 92 0.002 39.8 4.3 53 488-542 551-603 (1016)
275 PRK13766 Hef nuclease; Provisi 21.5 2.3E+02 0.0049 36.6 7.8 77 66-179 56-138 (773)
276 COG1948 MUS81 ERCC4-type nucle 21.5 1.2E+02 0.0026 33.6 4.4 54 488-542 184-237 (254)
277 PRK11057 ATP-dependent DNA hel 21.4 2.1E+02 0.0046 35.8 7.3 33 131-163 92-124 (607)
278 PRK00116 ruvA Holliday junctio 21.2 97 0.0021 32.8 3.7 39 488-526 75-115 (192)
279 COG1555 ComEA DNA uptake prote 21.1 1.1E+02 0.0023 31.2 3.7 30 487-516 98-132 (149)
280 KOG0389 SNF2 family DNA-depend 20.7 2.6E+02 0.0056 35.8 7.4 36 130-167 475-512 (941)
281 TIGR00084 ruvA Holliday juncti 20.6 79 0.0017 33.5 2.8 39 465-503 84-124 (191)
282 PRK13104 secA preprotein trans 20.2 3.2E+02 0.0069 35.8 8.4 62 64-163 119-180 (896)
283 PRK14669 uvrC excinuclease ABC 20.2 1.2E+02 0.0026 38.0 4.7 50 488-540 554-603 (624)
No 1
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4e-92 Score=836.76 Aligned_cols=641 Identities=26% Similarity=0.382 Sum_probs=574.2
Q ss_pred hcCCCCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecchHHHH-------------------HHHHHhhcCCCc
Q 001668 10 SSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-------------------FDILMQYSRGKS 70 (1034)
Q Consensus 10 ~~~~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v-------------------~~~l~~~~~~~~ 70 (1034)
+......|+||||||+||+.|+|.||++++.++|.|+.+||||||.+++ |+.+.++...+|
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~q 548 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQ 548 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCc
Confidence 3446689999999999999999999999999999999999999998765 566667777799
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcH-HHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHH
Q 001668 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR-EQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGL 149 (1034)
Q Consensus 71 ~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~-~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~ 149 (1034)
+||||++|+++.++|+.|+..+.+......|.... ...+.++.+..+..|..|+++|.+|+|+|||||++.+|..+|++
T Consensus 549 VLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdL 628 (1674)
T KOG0951|consen 549 VLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDL 628 (1674)
T ss_pred EEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHH
Confidence 99999999999999999998877766655665433 45677888888899999999999999999999999999999999
Q ss_pred hhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHH
Q 001668 150 FLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYE 229 (1034)
Q Consensus 150 F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~ 229 (1034)
|++|.++|||||.|||||||+|+++|||+||+.|++++|+|.++++.+.+||.||||||++|+.|.++|++...+.++|.
T Consensus 629 f~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyl 708 (1674)
T KOG0951|consen 629 FADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYL 708 (1674)
T ss_pred HhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHHHHH
Q 001668 230 NLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVD 309 (1034)
Q Consensus 230 ~ll~~~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~~l~ 309 (1034)
.+++++.||||++.+.|.|.+||||+.| +++..++++|+.+||||.||.+||..|++...-+...++....+++++++.
T Consensus 709 s~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ 787 (1674)
T KOG0951|consen 709 SLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAAT 787 (1674)
T ss_pred HhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHh
Confidence 9999999999999999999999999999 999999999999999999999999999987655544466677799999999
Q ss_pred HHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHh-CCCCCChHHHHHHhhccccccccccChhHHHHHhHhhh
Q 001668 310 ELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINI 388 (1034)
Q Consensus 310 ~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~-~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L~~ 388 (1034)
.|.++++|.+|...+.+++|++|+|+|+|||.+.+|..|.+ +.+.++..+++++++.+.||+.+.+|.+|+.+|+.|..
T Consensus 788 ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~el~~l~~ 867 (1674)
T KOG0951|consen 788 LLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKMELAKLLE 867 (1674)
T ss_pred hHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHHHhhhhcc
Confidence 99999999999888889999999999999999999999997 78899999999999999999999999999999999874
Q ss_pred ccCCcceeeecCCccccccccchhHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHhcchHHHHH
Q 001668 389 DKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVN 468 (1034)
Q Consensus 389 ~~~~~l~~~i~~~~~~~~~~~~~~~~Ka~vLLqAhl~r~~~~~d~sL~~D~~~Il~~a~rLl~am~eIa~~~~~~~~~l~ 468 (1034)
..|+|+ ++.+..|..|+++|||+|+++. .+.+++|..||.+|.++|.|+.||+++|++.++|...+.-
T Consensus 868 ----~vpIpi-------re~l~~p~akinvllq~yiS~l-k~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~ 935 (1674)
T KOG0951|consen 868 ----RVPIPI-------RENLDEPSAKINVLLQSYISQL-KLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQM 935 (1674)
T ss_pred ----cCCcCc-------hhccccchHHHHHHHHHHHhhc-ccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHH
Confidence 567776 3466789999999999999886 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcccccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCCCeeEE
Q 001668 469 SALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDM 548 (1034)
Q Consensus 469 ~l~L~q~L~QalW~~~~~~LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP~~l~v 548 (1034)
++.+|+|+.+++|+...| |+|+|+++.++++.++++.+ .++.+.++++.++..+. ..|++|+.+..++++|| ++.+
T Consensus 936 ~l~~ck~v~~r~w~~~~p-lrqf~~~~~ev~~~lE~k~~-~~~r~~~l~~~elg~lI-~~~k~G~~l~~~~~~fp-k~s~ 1011 (1674)
T KOG0951|consen 936 ALNLCKMVEKRMWPTQTP-LRQFKGCPKEVLRRLEKKEL-PWGRYYDLDPAELGELI-GVPKMGKPLHLFIRQFP-KLSV 1011 (1674)
T ss_pred HHHhHhHhhhhcccccCc-hhhcCCCCHHHHHHHHhccC-cchhhhccCHHHHHHHh-cCcccChhHHHHHHhcc-ccee
Confidence 999999999999999888 99999999999999997766 57888888889988888 47899999999999999 7887
Q ss_pred EEEEEEeecCCeEEEEEEEEEecCCcccCcccc----ceEEEEecCCCeEEEeeeeeeeccCcceEEEEEeeCCCCceEE
Q 001668 549 KIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHY----ADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLT 624 (1034)
Q Consensus 549 ~~ke~~v~~~~~~~l~Vkl~r~~p~~~~~k~~~----~wv~V~D~k~n~Il~~~ri~~~~~~~~~~v~l~f~aP~~G~~~ 624 (1034)
.. .++|.....++|.|++.+.+.|..+.|. .|++|+|.++.+|++++-+-+.+ ..+++.+..+.- .+.-.
T Consensus 1012 ~~---~vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k--~~~~v~ft~~~~-~~pP~ 1085 (1674)
T KOG0951|consen 1012 SA---HVQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKK--KEHTVNFTVPLF-EPPPQ 1085 (1674)
T ss_pred ee---eeeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEecc--CceEEEEEeecC-CCCCc
Confidence 44 3778888899999999998888776663 29999999999999988776653 244444322221 12346
Q ss_pred EEEEEEeCceeeccceEEEEEEeecCcccccccCcCCCCCCCCCcccccccCCcccccCC
Q 001668 625 VKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQT 684 (1034)
Q Consensus 625 ~~v~liSDsYvG~D~~~~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~i~~~~e~~~~~ 684 (1034)
|++.++||.|+|... .+++. ++++.+|.|+|||+++.|.+.....+...
T Consensus 1086 ~fi~lvSd~wl~s~~--~~Pvs---------fr~l~lpek~p~pt~lld~~~~~~~~l~N 1134 (1674)
T KOG0951|consen 1086 YFIRLVSDRWLHSET--VLPVS---------FRHLILPEKYPPPTELLDLQPLPVSALRN 1134 (1674)
T ss_pred eEEEEeeccccCCCc--ccccc---------hhhccCcccCCCCchhhhccccchhccCC
Confidence 899999999999999 88888 99999999999999999888776554443
No 2
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.1e-92 Score=831.17 Aligned_cols=855 Identities=25% Similarity=0.343 Sum_probs=660.9
Q ss_pred CCCCChhhhhcCCCCCcEEEEccCccCHHHHHHHhCCC-CCcEEeccccceecchHHHH-------------------HH
Q 001668 1 MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVP-VQGIKRFGEEMRPVKLTTKV-------------------FD 60 (1034)
Q Consensus 1 il~~l~~L~~~~~~~~riI~lSATlpn~~dla~wL~~~-~~~i~~f~~~~Rpv~L~~~v-------------------~~ 60 (1034)
|++|..|+.+.++..+||||||||+||+.|+|.||+++ ..++|.|+..|||||+.+.+ |+
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~ 340 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYD 340 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHH
Confidence 46788899999999999999999999999999999997 68999999999999998765 22
Q ss_pred H-HHhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCC
Q 001668 61 I-LMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLC 139 (1034)
Q Consensus 61 ~-l~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs 139 (1034)
. +..+.+|+|++|||++|+.+.++|+.|.+.+...|..+.|...+ .|++|+++..+|+|+|||||.
T Consensus 341 kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~-------------~~k~l~elf~~g~~iHhAGm~ 407 (1230)
T KOG0952|consen 341 KVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP-------------RNKQLKELFQQGMGIHHAGML 407 (1230)
T ss_pred HHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh-------------hhHHHHHHHHhhhhhcccccc
Confidence 2 24467899999999999999999999999998888887777643 357789999999999999999
Q ss_pred HHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEE
Q 001668 140 LKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219 (1034)
Q Consensus 140 ~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil 219 (1034)
.+||..+|+.|..|.++|||||+||||||||||+.|||+||+.|+..+|++.++++.+++|+.||||||+||..|.+||+
T Consensus 408 r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIi 487 (1230)
T KOG0952|consen 408 RSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIII 487 (1230)
T ss_pred hhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHhcCcccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCccccccc--CChhHHH
Q 001668 220 TRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKV--ISRDRIE 297 (1034)
Q Consensus 220 ~~~~~~~~y~~ll~~~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~--~s~~~l~ 297 (1034)
|+.+..++|.++++++.||||+|+.+|.|||||||++|||.++++|++||++||+|+||++||..||+..+ ...+.++
T Consensus 488 Tt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~ 567 (1230)
T KOG0952|consen 488 TTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLE 567 (1230)
T ss_pred ecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999766 4556789
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCC-CCChHHHHHHhhccccccccccC
Q 001668 298 KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPV-NCGLEDALHTVCHAEEIAWIQLR 376 (1034)
Q Consensus 298 ~~l~~l~~~~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~-~~s~~~iL~iLs~S~EF~~i~lR 376 (1034)
.++.++|..+++.|.+.+||+.|..++.+.+|++||+||+|||+++||+.|++... .++..++|.++|.|.||.+|++|
T Consensus 568 s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R 647 (1230)
T KOG0952|consen 568 SHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVR 647 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999998655 89999999999999999999999
Q ss_pred hhHHHHHhHhhhccCCcceeeecCCccccccccchhHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHhHHHHHHHHHH
Q 001668 377 RNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDY 456 (1034)
Q Consensus 377 ~~Ek~~L~~L~~~~~~~l~~~i~~~~~~~~~~~~~~~~Ka~vLLqAhl~r~~~~~d~sL~~D~~~Il~~a~rLl~am~eI 456 (1034)
.+|+++|++|+.+.....++.. ..-|+++|+|+|+.|. ...+++|..|..++.+++.||.++++++
T Consensus 648 ~eE~k~l~el~~~~~~~~~~~~-------------~~gk~nil~q~~Is~~-~~~~f~L~sD~~yv~qna~ri~ralf~i 713 (1230)
T KOG0952|consen 648 EEEKKELKELNEDSCEKYPFGG-------------EKGKVNILLQAYISRT-EVKDFSLMSDSLYVAQNAGRISRALFQI 713 (1230)
T ss_pred hhhHHHHHHHHhcccccccccc-------------cchhHHHHHHhhhhcc-ceeeeeeccCcccccccHHHHHHHHHHH
Confidence 9999999999976433333321 2578999999999886 6778999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHHHHHHHhhcCCCCcccccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHH
Q 001668 457 FIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIK 536 (1034)
Q Consensus 457 a~~~~~~~~~l~~l~L~q~L~QalW~~~~~~LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~ 536 (1034)
+...+|..-+.+++.|++||..++|....+ +.|++..-. ++ ++.+. .+..+...++..+.. +-+.| .
T Consensus 714 ~~~~~~~~~~~~~l~l~k~ier~mw~~~~~-l~qf~~~~~---~~-~~~~~----~l~~L~~~~~g~~w~-~~~~~---~ 780 (1230)
T KOG0952|consen 714 VLRQNWHLLSNRMLNLCKRIERRMWDFFIP-LKQFTLLLN---RK-ERKKL----TLLLLRKDELGELWH-NVPYG---L 780 (1230)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHhhhhh-hhcCCcccc---hh-hhhcc----hHHhhhhhhhccccc-cCchh---h
Confidence 999999877788899999999999998877 999998765 22 22222 344444444444432 22333 7
Q ss_pred HHHhcCCCeeEEEEEEEEeecCCeEEEEEEEEEecCCcccCccccc---eEEEEecCCCeEEEeeeeeeecc--C----c
Q 001668 537 ESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYA---DMIVGAEENNMVLFHEKIRVDEF--S----S 607 (1034)
Q Consensus 537 ~~~~~lP~~l~v~~ke~~v~~~~~~~l~Vkl~r~~p~~~~~k~~~~---wv~V~D~k~n~Il~~~ri~~~~~--~----~ 607 (1034)
+.+..+| .+.++.. +.|+....+++.+...+.+.|....|+. -+++.|...+.+++.+.+-.... . .
T Consensus 781 k~l~~ip-~v~v~a~---~~p~t~~vlri~~~~~~~f~w~~~~hg~~g~~i~~ed~~~~~i~h~e~~~~~~~~~~~s~~l 856 (1230)
T KOG0952|consen 781 KQLSGIP-LVNVEAL---IQPITRNVLRIEVAITPDFEWNDGIHGKAGQPIFKEDSSLLPILHIEVFLVNCKKVNESQLL 856 (1230)
T ss_pred hhhccCC-ceehhhh---hccchhhhheeeeccCCceEEecccccccCceeEeecCCCCcceeeeeehhhhhhhhhhhhe
Confidence 8888998 7777443 6677777778888777777776666655 38999999889998876643221 1 1
Q ss_pred ceEEEEEeeCCCCceEEEEEEEEeCceeeccceEEEEEEeecCcccccccCcCCCCCCCCCcccccccCCcccccCCch-
Q 001668 608 PYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTPA- 686 (1034)
Q Consensus 608 ~~~v~l~f~aP~~G~~~~~v~liSDsYvG~D~~~~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~i~~~~e~~~~~~~- 686 (1034)
.+++++.-+.|+ ++..++.+|.|+|++. ...+. ++++..|...++.++..+++.+...++.+..
T Consensus 857 vf~ipis~pLps----~~~~~~~s~~~l~~e~--~~~~s---------~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~ 921 (1230)
T KOG0952|consen 857 VFTIPISDPLPS----QIRHRAVSDNWLGAET--VYPLS---------FQHLILPDNEPPLTELLDLRPLPSSALKNVVF 921 (1230)
T ss_pred eEEeecccCCcc----ceEEeeecccccCCce--ecccc---------ccceeccccccccccccccCCCcchhhccccH
Confidence 223333223332 4788899999999999 55555 6777888888888888888888877776553
Q ss_pred -------------------------------------------------------------hhhcccC-CCccccCCCCC
Q 001668 687 -------------------------------------------------------------QEIDNLL-SSTMEDSSMPS 704 (1034)
Q Consensus 687 -------------------------------------------------------------~~~~~~~-~~~~~~~~~~~ 704 (1034)
.++..+. .|.+....++.
T Consensus 922 e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 922 EALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred HHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCC
Confidence 1111011 12222234445
Q ss_pred CCCCCcccCCCCCCCCCCCCccccccchhhhHHHH--HhhccCCCCCCCc--cccCCCC--ccccccchhhhccccccCC
Q 001668 705 FSLLDEDLGEGKTAAGVEDDDCRVITEKKVFQHIR--EKARNFPISTASN--NAHSASS--EPLILTRKRFYEQRLQLHD 778 (1034)
Q Consensus 705 ~~~~d~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~l~~ 778 (1034)
+..++.+.+...+..+..++++-++|.++.|.|+| ++.++||.+++-. .+|+-+. .| +|.++.++.+..+-+.
T Consensus 1002 ~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgP-Vle~ivsr~n~~s~~t 1080 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGP-VLEVIVSRMNYISSQT 1080 (1230)
T ss_pred ceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcc-eEEEEeeccccCcccc
Confidence 66666666666667888999999999999999999 9999999885533 3333332 46 8888888887722221
Q ss_pred ccCccccCCCCCCCcccccCCCCCCchhhhhccCccCcccccCCccccccccccCCCCCccccccccCCCCccccccccc
Q 001668 779 ELDVPEETEGSIFPRATLLNPSSGSTEAELKEHGFNSSLTAAGNLGTINLLDDTGAFSLPKFFMFEDTVPSQYEECTSKT 858 (1034)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (1034)
+ ..+-. .+-+.+.+++. ++-+=-|+.-.|.|+.+..-+|-+ .+-..
T Consensus 1081 ~---------~~vr~-----------------~glsta~~na~-----dla~wl~~~~~~nf~~svrpvp~~---~~i~g 1126 (1230)
T KOG0952|consen 1081 E---------EPVRY-----------------LGLSTALANAN-----DLADWLNIKDMYNFRPSVRPVPLE---VHIDG 1126 (1230)
T ss_pred C---------cchhh-----------------hhHhhhhhccH-----HHHHHhCCCCcCCCCcccccCCce---EeecC
Confidence 1 00111 11122222221 111112232233344444433333 22222
Q ss_pred cchhhhhHHHHhhcCCCccccccccccccccccccccccCCCCchhhhhhhccccccccccccccCCccccccccccccc
Q 001668 859 LTKSTIFEHIRKKSKNFPVFNSNISKTMESDSAIQTNEHFPANQSEFCIAASDVTKDANSDAVLRDGSTISDMEFGALDK 938 (1034)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1034)
++- +|..+|.+|.|=|.|.. +|+ .|.+.|.+-..+
T Consensus 1127 fp~--~~~cprm~smnkpa~qa--ik~------------~sp~~p~lifv~----------------------------- 1161 (1230)
T KOG0952|consen 1127 FPG--QHYCPRMMSMNKPAFQA--IKT------------HSPIKPVLIFVS----------------------------- 1161 (1230)
T ss_pred CCc--hhcchhhhhcccHHHHH--Hhc------------CCCCCceEEEee-----------------------------
Confidence 332 59999999999999993 331 244444432211
Q ss_pred ccCCcceecccCCcccCCCcccccccccCCccccccccCCCCCccccc-----ccccccccccccCCCCCCCCccCCccc
Q 001668 939 NANDNKVCTKQNHNIVSGSCCRTFRKLNLSPIASVAGTAEPSSSIKML-----SFDISMMKKQKCSPNTSTRQCCPLPLA 1013 (1034)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1034)
.-+.+.+.+.+.+.+. +++.|-..|+ ++|+.|.|.+..+...++++|.. |+
T Consensus 1162 --------------srrqtrlta~~li~~~--------~~~~~p~~fl~~de~e~e~~~~~~~d~~Lk~tl~Fgi~--lh 1217 (1230)
T KOG0952|consen 1162 --------------SRRQTRLTALDLIASC--------ATEDNPKQFLNMDELELEIIMSKVRDTNLKLTLPFGIG--LH 1217 (1230)
T ss_pred --------------cccccccchHhHHhhc--------cCCCCchhccCCCHHHHHHHHHHhcccchhhhhhhhhh--hh
Confidence 1122334444443321 1233334444 66677999999999999999998 77
Q ss_pred cCCCc
Q 001668 1014 STGKT 1018 (1034)
Q Consensus 1014 ~~~~~ 1018 (1034)
-+|=+
T Consensus 1218 hagl~ 1222 (1230)
T KOG0952|consen 1218 HAGLI 1222 (1230)
T ss_pred hhhcc
Confidence 77643
No 3
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-63 Score=621.65 Aligned_cols=492 Identities=23% Similarity=0.318 Sum_probs=396.5
Q ss_pred CCCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecchHHHH-----------------------HHHH-HhhcCC
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-----------------------FDIL-MQYSRG 68 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v-----------------------~~~l-~~~~~~ 68 (1034)
..++|+|+||||++|++++++|+++.. +...+||+++...+ +..+ .....+
T Consensus 169 ~~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (737)
T PRK02362 169 NPDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEG 243 (737)
T ss_pred CCCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcC
Confidence 357999999999999999999998753 55566666654321 2222 234578
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCc-HHH----HHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHH
Q 001668 69 KSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD-REQ----QERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143 (1034)
Q Consensus 69 ~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~-~~~----~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR 143 (1034)
+++||||+||+.|+.+|..|....... .... ... .+.+........+..|..++..||++|||||++.+|
T Consensus 244 ~~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR 318 (737)
T PRK02362 244 GQCLVFVSSRRNAEGFAKRAASALKKT-----LTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHR 318 (737)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHH
Confidence 899999999999999999998754221 0000 011 111211222234678999999999999999999999
Q ss_pred HHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccc
Q 001668 144 NLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223 (1034)
Q Consensus 144 ~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~ 223 (1034)
..|+++|++|.++|||||++++||||+|+++|||+++++|++.. ++.|+++.+|+||+|||||+|+|..|.|++++...
T Consensus 319 ~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 319 ELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 99999999999999999999999999999999999999999876 45899999999999999999999999999999774
Q ss_pred --cHHHHHHHhc-Ccccccchhh--hhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHH
Q 001668 224 --TVHLYENLLN-GCEMVESQLL--SCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEK 298 (1034)
Q Consensus 224 --~~~~y~~ll~-~~~pieS~L~--~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~ 298 (1034)
..++|++++. .++|++|+|. ..+.+|++++|+.|++.+.+++++|+++||||++.. ...
T Consensus 398 ~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~----------------~~~ 461 (737)
T PRK02362 398 DELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTD----------------DTG 461 (737)
T ss_pred hhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhcc----------------chH
Confidence 3567888885 6999999995 479999999999999999999999999999998621 235
Q ss_pred HHHHHHHHHHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHh-CCCC--CChHHHHHHhhcccccccccc
Q 001668 299 HMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVN--CGLEDALHTVCHAEEIAWIQL 375 (1034)
Q Consensus 299 ~l~~l~~~~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~-~~~~--~s~~~iL~iLs~S~EF~~i~l 375 (1034)
+++++++++++.|.++|||..+ +..+.||++|+++|+|||+|.|+..|.. +... .+..++|++||.+.||..+++
T Consensus 462 ~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~ 539 (737)
T PRK02362 462 RLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYL 539 (737)
T ss_pred HHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCcccccccc
Confidence 6788899999999999999765 3458999999999999999999999986 3332 478899999999999999999
Q ss_pred ChhHHHHHhHhhhccC----CcceeeecCCccccccccchhHHHHHHHHHHHhcCCCCCC---Ccch-hhHHHHHHHHhH
Q 001668 376 RRNEKKLLNVINIDKD----GRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVH---DLSL-TQDMNSISTNGS 447 (1034)
Q Consensus 376 R~~Ek~~L~~L~~~~~----~~l~~~i~~~~~~~~~~~~~~~~Ka~vLLqAhl~r~~~~~---d~sL-~~D~~~Il~~a~ 447 (1034)
|++|...+..+..+.. ..+|++.... .-....+..|+++||++|++|.+... .+.+ ..|...++.++.
T Consensus 540 r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~ 615 (737)
T PRK02362 540 RSGDYEWLNEYLYEHEDELLGDVPSEFEDD----EFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAE 615 (737)
T ss_pred ChhHHHHHHHHHHhcccchhccCCchhhhh----hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999998888753221 1223222110 00012378899999999999985211 1123 568899999999
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhcCCCCcccccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCC
Q 001668 448 RIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGR 527 (1034)
Q Consensus 448 rLl~am~eIa~~~~~~~~~l~~l~L~q~L~QalW~~~~~~LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~ 527 (1034)
+|+.++.++|.. .|+..+..+++|+|||.||+|++..+ |+||||||++++++|+++|++|+.+|+.++++++..++|
T Consensus 616 ~l~~a~~~i~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~-L~~ip~i~~~~a~~l~~~gi~s~~dl~~~~~~~l~~~~g- 692 (737)
T PRK02362 616 WLLHAAERLASE-LDLDLARAARELEKRVEYGVREELLD-LVGLRGVGRVRARRLYNAGIESRADLRAADKSVVLAILG- 692 (737)
T ss_pred HHHHHHHHHHHH-hCccHHHHHHHHHHHHHhCCCHHHHH-HhCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHC-
Confidence 999999999765 55666888999999999999999888 999999999999999999999999999999999999854
Q ss_pred CCchhHHHHHHHhc
Q 001668 528 KYPFGNHIKESLLS 541 (1034)
Q Consensus 528 ~~~~g~~I~~~~~~ 541 (1034)
.+..++|.+.+..
T Consensus 693 -~~~~~~i~~~~~~ 705 (737)
T PRK02362 693 -EKIAENILEQAGR 705 (737)
T ss_pred -HHHHHHHHHHhCc
Confidence 3455666666663
No 4
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-61 Score=599.37 Aligned_cols=498 Identities=25% Similarity=0.324 Sum_probs=389.2
Q ss_pred cCCCCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecchHHHH--------------------HHHH-HhhcCCC
Q 001668 11 SSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV--------------------FDIL-MQYSRGK 69 (1034)
Q Consensus 11 ~~~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v--------------------~~~l-~~~~~~~ 69 (1034)
....++|+|+||||++|++++++|++++. +...+||+++...+ ...+ .....++
T Consensus 165 ~l~~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 239 (720)
T PRK00254 165 HMLGRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGK 239 (720)
T ss_pred hcCcCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCC
Confidence 34467999999999999999999999763 45567777663211 0111 2234678
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcH--HHHHHHH-HhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 70 SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR--EQQERLR-EASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 70 ~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~--~~~~~l~-~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
++||||+||+.|+.+|..|...+.. +.... +....+. .......+..|++++..||++|||||++++|..+
T Consensus 240 ~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~v 313 (720)
T PRK00254 240 GALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLI 313 (720)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHH
Confidence 9999999999999999999765432 11111 1111111 1112345778999999999999999999999999
Q ss_pred HHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc-H
Q 001668 147 EGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET-V 225 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~-~ 225 (1034)
+++|++|.++|||||++|+||||+|+++|||+++++|+. .++.++++.+|+||+|||||+|+|..|.+++++...+ .
T Consensus 314 e~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~ 391 (720)
T PRK00254 314 EDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPS 391 (720)
T ss_pred HHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchH
Confidence 999999999999999999999999999999999999863 3457789999999999999999999999999997655 5
Q ss_pred HHHHHHhcC-cccccchhh--hhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHH
Q 001668 226 HLYENLLNG-CEMVESQLL--SCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQE 302 (1034)
Q Consensus 226 ~~y~~ll~~-~~pieS~L~--~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~ 302 (1034)
.+|++++.+ ++++.|.+. +.+.+|++++|+.+++.+.+++++|+++||+|+ +||++|++ .+
T Consensus 392 ~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~~~~~~~-------------~~ 455 (720)
T PRK00254 392 KLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QRKDLYSL-------------EE 455 (720)
T ss_pred HHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hhcChHhH-------------HH
Confidence 678888665 556666653 367899999999999999999999999999996 47877754 23
Q ss_pred HHHHHHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHh-CC---CCCChHHHHHHhhccccccccccChh
Q 001668 303 VCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TP---VNCGLEDALHTVCHAEEIAWIQLRRN 378 (1034)
Q Consensus 303 l~~~~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~-~~---~~~s~~~iL~iLs~S~EF~~i~lR~~ 378 (1034)
++++++..|.+++||..++++ .+.+|++|+++|+|||+|.|+..|.. +. .+.+..++|++||.+.||..+++|++
T Consensus 456 ~v~~~l~~L~~~~~i~~~~~~-~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~ 534 (720)
T PRK00254 456 KAKEIVYFLLENEFIDIDLED-RFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRK 534 (720)
T ss_pred HHHHHHHHHHHCCCeEEcCCC-CEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchh
Confidence 566788899999999987544 47999999999999999999999975 22 36788999999999999999999999
Q ss_pred HHHHHhHhhhccCCcceeeecCCccccccccchhHHHHHHHHHHHhcCCCCCCCc-c---hhhHHHHHHHHhHHHHHHHH
Q 001668 379 EKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDL-S---LTQDMNSISTNGSRIAKCMR 454 (1034)
Q Consensus 379 Ek~~L~~L~~~~~~~l~~~i~~~~~~~~~~~~~~~~Ka~vLLqAhl~r~~~~~d~-s---L~~D~~~Il~~a~rLl~am~ 454 (1034)
|...|.++.......+..++...... ......+..|+++|||+|++|.+..... . -..|+..|++.+.+|+.|+.
T Consensus 535 e~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~l~~a~~ 613 (720)
T PRK00254 535 EMEDLLDEAYEMEDRLYFNIPYWEDY-KFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWLMYSLI 613 (720)
T ss_pred hHHHHHHHHHhhcccccccCCcchhh-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 99888765443222221111100000 0111237899999999999997532211 1 16899999999999999999
Q ss_pred HHHHHhcchHHHHHHH-HHHHHHHhhcCCCCcccccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhH
Q 001668 455 DYFIFRKNYKGAVNSA-LLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGN 533 (1034)
Q Consensus 455 eIa~~~~~~~~~l~~l-~L~q~L~QalW~~~~~~LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~ 533 (1034)
+++...++....++++ +|+|||+||+|++..+ |.|+||||+.++++|.++|+.|+.+++.++++++..+.|...+..+
T Consensus 614 ~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~-L~~ipgig~~~~~~l~~~g~~s~~~i~~a~~~el~~~~gi~~~~a~ 692 (720)
T PRK00254 614 ELYKLFEPKQEVLDYLETLHLRVKHGVREELLE-LMRLPMIGRKRARALYNAGFRSIEDIVNAKPSELLKVEGIGAKIVE 692 (720)
T ss_pred HHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhh-hhcCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHhcCCCCCHHHHH
Confidence 9998666433333333 6999999999999888 9999999999999999999999999999999999998764445555
Q ss_pred HHHHHHh
Q 001668 534 HIKESLL 540 (1034)
Q Consensus 534 ~I~~~~~ 540 (1034)
.|.+.++
T Consensus 693 ~i~~~~~ 699 (720)
T PRK00254 693 GIFKHLG 699 (720)
T ss_pred HHHHHhc
Confidence 5555555
No 5
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-58 Score=566.78 Aligned_cols=465 Identities=22% Similarity=0.286 Sum_probs=369.5
Q ss_pred CCCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecchHHH------------------HHHHHHh-hcCCCcEEE
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTK------------------VFDILMQ-YSRGKSALV 73 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~------------------v~~~l~~-~~~~~~~LV 73 (1034)
..++|+|+||||++|++++++|++++. +...+||+|+... +...+.. ...++++||
T Consensus 167 ~~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLV 241 (674)
T PRK01172 167 NPDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLV 241 (674)
T ss_pred CcCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEE
Confidence 457999999999999999999998763 5566677765421 1222322 456889999
Q ss_pred EcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcC
Q 001668 74 FCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG 153 (1034)
Q Consensus 74 Fv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G 153 (1034)
||+||+.|+.+|..|......... +.. ........++.|++++.+||++|||||++++|..++++|++|
T Consensus 242 F~~sr~~~~~~a~~L~~~~~~~~~---~~~--------~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g 310 (674)
T PRK01172 242 FVSSRKNAEDYAEMLIQHFPEFND---FKV--------SSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR 310 (674)
T ss_pred EeccHHHHHHHHHHHHHhhhhccc---ccc--------cccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC
Confidence 999999999999999876432111 000 000112345678899999999999999999999999999999
Q ss_pred CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc-HHHHHHHh
Q 001668 154 DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET-VHLYENLL 232 (1034)
Q Consensus 154 ~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~-~~~y~~ll 232 (1034)
.++|||||++++||||+|++.|||.++.+|+.... .|+++.+|+||+|||||+|+|..|.+++++...+ .++|++++
T Consensus 311 ~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~--~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 311 YIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGI--RYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred CCeEEEecchhhccCCCcceEEEEcCceEeCCCCc--eeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 99999999999999999999999999888876432 5789999999999999999999999998887654 67788888
Q ss_pred -cCcccccchhhhhhhh--hhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHHHHH
Q 001668 233 -NGCEMVESQLLSCVTE--HLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVD 309 (1034)
Q Consensus 233 -~~~~pieS~L~~~L~d--~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~~l~ 309 (1034)
..+.|++|+|...... +++++|+.|.+.+.+|+++|++|||+|++ |+ ..+++++++++++
T Consensus 389 ~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~--------------~~~l~~~v~~~l~ 451 (674)
T PRK01172 389 SGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG--------------VDEIDYYIESSLK 451 (674)
T ss_pred cCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc--------------hHHHHHHHHHHHH
Confidence 5699999999875444 55699999999999999999999999984 21 1256778889999
Q ss_pred HHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHh-CCCCCChHHHHHHhhccccccccccChhHHHHHhHhhh
Q 001668 310 ELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINI 388 (1034)
Q Consensus 310 ~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~-~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L~~ 388 (1034)
.|.++|+|..+ + .+.+|++|++||+|||+|.|+..|.. +....+...+|++||.+.|| +++|..|...+.++..
T Consensus 452 ~L~~~~~i~~~--~-~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~--~~~~~~~~~~~~~~~~ 526 (674)
T PRK01172 452 FLKENGFIKGD--V-TLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREI--IPANTRDDYYAMEFLE 526 (674)
T ss_pred HHHHCCCcccC--C-cEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccc--cccccchHHHHHHHHH
Confidence 99999999532 2 37999999999999999999999986 66677899999999999999 7888887777766654
Q ss_pred ccCCcceeeecCCccccccccchhHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHhcchHHHHH
Q 001668 389 DKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVN 468 (1034)
Q Consensus 389 ~~~~~l~~~i~~~~~~~~~~~~~~~~Ka~vLLqAhl~r~~~~~d~sL~~D~~~Il~~a~rLl~am~eIa~~~~~~~~~l~ 468 (1034)
.. +. . ....++.|+++|||+|++|.+. . ....++..++.+++++.+ .-+|+..++.
T Consensus 527 ~~----~~-~---------~~~~~~~k~~~ll~~~~~~~~~-~------~i~~~~~~~~g~l~~~~~---~~~~~~~a~~ 582 (674)
T PRK01172 527 DI----GV-I---------DGDISAAKTAMVLRGWISEASM-Q------KITDTYGIAPGDVQARAS---SADWISYSLA 582 (674)
T ss_pred Hh----cc-c---------cchhHHHHHHHHHHHHHcCCCH-H------HHHHHhCCChHHHHHHHH---HHHHHHHHHH
Confidence 21 11 0 1235789999999999999842 1 134445555556665532 2334433333
Q ss_pred H------HHHHHH-------HHhhcCCCCcccccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHH
Q 001668 469 S------ALLAKS-------LYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHI 535 (1034)
Q Consensus 469 ~------l~L~q~-------L~QalW~~~~~~LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I 535 (1034)
. ++++|+ |.||+|++..| |+|||||++.++++|+++|++|+.+|++++++++..+++......++|
T Consensus 583 ~~~~~~~~~~~~~l~~~~~rl~~gv~~~~~~-L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~~~~~i 661 (674)
T PRK01172 583 RLSSIYKPEMRRKLEILNIRIKEGIREDLID-LVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDTLANAI 661 (674)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCHHHHh-hcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHHHHHHH
Confidence 3 455555 99999999888 999999999999999999999999999999999999998777777888
Q ss_pred HHHHhcC
Q 001668 536 KESLLSL 542 (1034)
Q Consensus 536 ~~~~~~l 542 (1034)
.+.++.+
T Consensus 662 ~~~~~~~ 668 (674)
T PRK01172 662 VNRAMKI 668 (674)
T ss_pred HHHHHHH
Confidence 7777654
No 6
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.8e-50 Score=492.75 Aligned_cols=495 Identities=25% Similarity=0.343 Sum_probs=346.0
Q ss_pred CCcEEEEccCccCHHHHHHHhCCCCC-cEEeccccceecchHHHH------------------HHH-HHhhcCCCcEEEE
Q 001668 15 SVRFLAVSATIPNIEDIAEWLNVPVQ-GIKRFGEEMRPVKLTTKV------------------FDI-LMQYSRGKSALVF 74 (1034)
Q Consensus 15 ~~riI~lSATlpn~~dla~wL~~~~~-~i~~f~~~~Rpv~L~~~v------------------~~~-l~~~~~~~~~LVF 74 (1034)
.+|||+||||+||+.++|.||+++.. ..+.+.+.+|+|+....+ +.. +.....++|+|||
T Consensus 180 ~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvF 259 (766)
T COG1204 180 LIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVF 259 (766)
T ss_pred ceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 38999999999999999999999853 344555555555544332 122 2456789999999
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHH-HhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcC
Q 001668 75 CSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLR-EASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG 153 (1034)
Q Consensus 75 v~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~-~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G 153 (1034)
|+||+.|..+|+.|......................+. .......++.|++++..|+|+|||||+.++|..+|+.|+.|
T Consensus 260 v~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g 339 (766)
T COG1204 260 VHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG 339 (766)
T ss_pred EecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC
Confidence 99999999999999864332211111110000001111 11222335789999999999999999999999999999999
Q ss_pred CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecc-ccHHHHHHHh
Q 001668 154 DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR-ETVHLYENLL 232 (1034)
Q Consensus 154 ~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~-~~~~~y~~ll 232 (1034)
.|+|||||+|||||||+||.+|||.++.+|++..| +.++++.+|+||+|||||||+|..|.+++++.. .+..++....
T Consensus 340 ~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g-~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~ 418 (766)
T COG1204 340 KIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELY 418 (766)
T ss_pred CceEEEechHHhhhcCCcceEEEEeeeEEEcCCCC-eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHh
Confidence 99999999999999999999999999999999444 899999999999999999999999999999854 4444444333
Q ss_pred cCcccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHHHHHHHH
Q 001668 233 NGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELS 312 (1034)
Q Consensus 233 ~~~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~~l~~L~ 312 (1034)
....|.. +.+.|.+..+++...+.+.+..++++|+..+|+|.|+..||..|+. ....+.+..++..|.
T Consensus 419 ~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~----------~~~~~~i~~~~~~L~ 486 (766)
T COG1204 419 IQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGE----------GMLREEILASLRYLE 486 (766)
T ss_pred hccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccc----------cchHHHHHHHHHHHH
Confidence 3333322 3344444448899999999999999999999999999999998865 123445556788888
Q ss_pred HCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhC----CCCCChHHHHHHhhccccccccccChhHHHHH-hHhh
Q 001668 313 CHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQT----PVNCGLEDALHTVCHAEEIAWIQLRRNEKKLL-NVIN 387 (1034)
Q Consensus 313 ~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~----~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek~~L-~~L~ 387 (1034)
+++++ .+....-+.+|++|..+|+|||++.|+..|... ....+..++++.++.++||..+.+|..+...+ .+..
T Consensus 487 ~~~~~-~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~~~ 565 (766)
T COG1204 487 ENGLI-LDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDEL 565 (766)
T ss_pred hccce-eeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHHHH
Confidence 88733 244444589999999999999999999999862 22248899999999999999999999888776 4433
Q ss_pred hccCCcceeeecCCccccccccchhHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHhcchHHHH
Q 001668 388 IDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAV 467 (1034)
Q Consensus 388 ~~~~~~l~~~i~~~~~~~~~~~~~~~~Ka~vLLqAhl~r~~~~~d~sL~~D~~~Il~~a~rLl~am~eIa~~~~~~~~~l 467 (1034)
.+....+........ ..+........|....+.+|+. ..|...|++...+...++..++....|. .+.
T Consensus 566 ~~~~~~~~~~~~~~~-~~e~~~~l~~~~~~~~l~~wi~----------~~~~~~i~~~~~~~~~dl~~~~~~a~w~-~~~ 633 (766)
T COG1204 566 EEQSDYLLGERLDEL-AVEYNLLLQALKTAARLLDWIN----------EADEDEILNAYGVAPGDLLRIAETAEWL-SAD 633 (766)
T ss_pred HhcchHHhhcccccc-chhhHHHHHHHHHHHHHHHHHH----------hCcHHHHHHHhCcchhhHHhhcchhhhh-hhh
Confidence 221111111000000 0000011223444444444443 3445555555555555555555555554 222
Q ss_pred HHHH------------------------HHHHHHhhcC-CCCcccccccCCCCHHHHHHHHhCCCCCHHHHh-hCChHHH
Q 001668 468 NSAL------------------------LAKSLYQRLW-DDSPYLLKQLPGIGMVTAKALHSMGIKSFETLA-EADPRRI 521 (1034)
Q Consensus 468 ~~l~------------------------L~q~L~QalW-~~~~~~LlQLP~I~~~~ak~L~~~gi~Sl~~L~-~~~~~~l 521 (1034)
+.. +..++..++. +... +|..+++++..++++++++|+++++++. ...+.++
T Consensus 634 -~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~-~l~~i~~~grvrar~ly~~g~~~~~~~~~~~~~~~~ 711 (766)
T COG1204 634 -LLALGKAAERLAKILGLGLHVLRKLEILSLRIEYGVRSEELL-ELVEIRGVGRVRARKLYNAGYKSLEDLRLIADPAEL 711 (766)
T ss_pred -hhhhhhhhhhhHhhhCCCccccccchhhhhhhhcCCChhhhc-ccccccccchhHHHHHHHhhhccHHHHHhhcChhhh
Confidence 333 3444444544 2233 3788999999999999999999999999 5777777
Q ss_pred HHhhCCCCchhHHHHHHHhc
Q 001668 522 EIVTGRKYPFGNHIKESLLS 541 (1034)
Q Consensus 522 e~Ll~~~~~~g~~I~~~~~~ 541 (1034)
..+.+ .|..++..+..
T Consensus 712 ~~~~~----~~~~~~~~i~~ 727 (766)
T COG1204 712 LPLTG----IGERLVEAILE 727 (766)
T ss_pred hhhhh----hHHHHHHHHHH
Confidence 66653 55555554444
No 7
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=4.4e-45 Score=411.89 Aligned_cols=305 Identities=21% Similarity=0.282 Sum_probs=264.5
Q ss_pred cccCCCcccccccccchhhHHHHHh-CCCCCChHHHHHHhhccccccccccChhHHHHHhHhhhccCCcceeeecCCccc
Q 001668 326 LKPQEPGRLMTKYYLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGK 404 (1034)
Q Consensus 326 l~~t~lG~i~s~yyI~~~T~~~f~~-~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L~~~~~~~l~~~i~~~~~~ 404 (1034)
+.+|++|++||+|||++.|++.|.. +.++++..++|++||.|.||..+++|++|+.++++|.... +++..
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~----~~~~~----- 72 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKL----PIRLE----- 72 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhC----CcCcC-----
Confidence 5789999999999999999999986 6778999999999999999999999999999999998642 22221
Q ss_pred cccccchhHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhcCCCC
Q 001668 405 RKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDS 484 (1034)
Q Consensus 405 ~~~~~~~~~~Ka~vLLqAhl~r~~~~~d~sL~~D~~~Il~~a~rLl~am~eIa~~~~~~~~~l~~l~L~q~L~QalW~~~ 484 (1034)
....+.++.|+++|||||++|. .+.+.+|..|+.+|+++|+||++||++|+..++|+.++.++++|+|||+||+|++.
T Consensus 73 -~~~~~~~~~K~~lLLqa~i~r~-~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~ 150 (312)
T smart00611 73 -NPSLDDPHVKANLLLQAHLSRL-KLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTD 150 (312)
T ss_pred -CCCCCCchHHHHHHHHHHHccC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCC
Confidence 1234678999999999999998 45667899999999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCCCeeEEEEEE---EEeecCCeE
Q 001668 485 PYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEE---IKCQGQGKS 561 (1034)
Q Consensus 485 ~~~LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP~~l~v~~ke---~~v~~~~~~ 561 (1034)
+| |+|||||+++.+++|+++|+.++++|.++++++++.+++..+++|++|+++++.|| .++++++. .....+..+
T Consensus 151 ~~-L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P-~l~v~~~~~~~~~~~~~~~~ 228 (312)
T smart00611 151 SP-LLQLPHLPEEILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLP-KLNIEISLEPITRTVLGVEV 228 (312)
T ss_pred Cc-cccCCCCCHHHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCC-cceeEEEEcCCcccccCceE
Confidence 88 99999999999999999999999999999999999999988899999999999999 89987762 112334456
Q ss_pred EEEEEEEEecCCcccCccccceEEEEecCCCeEEEeeeeeeeccCcceEEEEEeeCCC-CceEEEEEEEEeCceeeccce
Q 001668 562 KLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQ-QGKLTVKADLIFEEYIGVDIH 640 (1034)
Q Consensus 562 ~l~Vkl~r~~p~~~~~k~~~~wv~V~D~k~n~Il~~~ri~~~~~~~~~~v~l~f~aP~-~G~~~~~v~liSDsYvG~D~~ 640 (1034)
++++++++... +..+.+.||++|||.++|+|++.+++++.......+++++|.+|. .|.|+|+|+++||+|+|+|++
T Consensus 229 ~i~~~~~~~~~--~~~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~~~~~v~v~SD~y~g~d~~ 306 (312)
T smart00611 229 TLTVDLTWDDE--IHGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGNYQYTLRLVSDSYLGCDQE 306 (312)
T ss_pred EEEEEEEEccc--ccCCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCcceEEEEEEecccCCcceE
Confidence 66666666432 234667899999999999999999998876544446788899997 689999999999999999997
Q ss_pred EEEEE
Q 001668 641 QKLVL 645 (1034)
Q Consensus 641 ~~i~l 645 (1034)
..+.+
T Consensus 307 ~~i~~ 311 (312)
T smart00611 307 YPLSF 311 (312)
T ss_pred EEEee
Confidence 77665
No 8
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=4.7e-45 Score=411.95 Aligned_cols=302 Identities=29% Similarity=0.444 Sum_probs=221.4
Q ss_pred cCCCcccccccccchhhHHHHHh-CCCCCChHHHHHHhhccccccccccChhHHHHHhHhhhccCCcceeeecCCccccc
Q 001668 328 PQEPGRLMTKYYLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRK 406 (1034)
Q Consensus 328 ~t~lG~i~s~yyI~~~T~~~f~~-~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L~~~~~~~l~~~i~~~~~~~~ 406 (1034)
||++|+|||+|||++.||..|.+ +.++++..++|++||.|.||.++++|++|+..|++|+.. ++++++ +
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~----~~~~~~------~ 70 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKK----IPYPIK------K 70 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCC----SSS--S------T
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHh----cccCcc------c
Confidence 69999999999999999999998 888999999999999999999999999999999999953 555542 2
Q ss_pred cccchhHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhcCCCCcc
Q 001668 407 KRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPY 486 (1034)
Q Consensus 407 ~~~~~~~~Ka~vLLqAhl~r~~~~~d~sL~~D~~~Il~~a~rLl~am~eIa~~~~~~~~~l~~l~L~q~L~QalW~~~~~ 486 (1034)
..+..++.|+++||||||.|. .+++.+|.+|+.+|+++++||++||++||..++|+.++.++|+|+|||+||+|+..++
T Consensus 71 ~~~~~~~~K~~~Llqa~l~r~-~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~ 149 (314)
T PF02889_consen 71 EKINDPHIKAFVLLQAHLSRI-PLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSP 149 (314)
T ss_dssp S-TTSHHHHHHHHHHHHHCT------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-G
T ss_pred cccccHHHHHHHHHHHhccCC-CcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCCh
Confidence 245678999999999999997 5666899999999999999999999999999999999999999999999999976666
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCCCeeEEEEEEEEeecC-----CeE
Q 001668 487 LLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQ-----GKS 561 (1034)
Q Consensus 487 ~LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP~~l~v~~ke~~v~~~-----~~~ 561 (1034)
|+|||||+++.+++|.++|+.++++|+++++++++.++++++++|++|.+++.+|| .++++++ +.+. ..+
T Consensus 150 -L~Qlp~i~~~~~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P-~~~i~~~---~~~~~~~~~~~~ 224 (314)
T PF02889_consen 150 -LLQLPHIGEESLKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIP-RLEIKAS---VQVIDEEIVPIL 224 (314)
T ss_dssp -GGGSTT--HHHHHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS---EEEEEE---ETTCCGEECSEE
T ss_pred -hhcCCCCCHHHHHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCC-CEEEEEE---EeccccccCCcE
Confidence 99999999999999999999999999999999999999989999999999999999 8888766 2222 336
Q ss_pred EEEEEEEEecC---CcccCccccceEEEEecCCCeEEEeeeeeeeccCcceEEEEEeeCCCC-ce--EEEEEEEEeCcee
Q 001668 562 KLLITLTRLSQ---SVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQ-GK--LTVKADLIFEEYI 635 (1034)
Q Consensus 562 ~l~Vkl~r~~p---~~~~~k~~~~wv~V~D~k~n~Il~~~ri~~~~~~~~~~v~l~f~aP~~-G~--~~~~v~liSDsYv 635 (1034)
++.|++++.+. .++..+.+.||++|+|+++|+|++.++++...........++|.+|.+ |. ++|.++++||+|+
T Consensus 225 ~v~v~i~~~~~~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~ 304 (314)
T PF02889_consen 225 TVQVSITRKFSWSDRFPKKKKESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIPVGPRPYQYTVYVISDSYL 304 (314)
T ss_dssp EEEEEEEESSS-SST-SS--B--EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS-EE--EEEEEEEEESS-S
T ss_pred EEEEEEEcccccccCCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCCCCCCCceEEEEEEECCcc
Confidence 77777777653 344456788999999999999999999988211024567788888875 77 9999999999999
Q ss_pred eccceEEEEE
Q 001668 636 GVDIHQKLVL 645 (1034)
Q Consensus 636 G~D~~~~i~l 645 (1034)
|+|+++.+++
T Consensus 305 G~d~~~~i~~ 314 (314)
T PF02889_consen 305 GLDQEVPINF 314 (314)
T ss_dssp S--EEEEEEE
T ss_pred ccceEEEeeC
Confidence 9999877764
No 9
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=9.8e-41 Score=399.00 Aligned_cols=314 Identities=26% Similarity=0.455 Sum_probs=275.4
Q ss_pred hhhhhcCCCCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecchHHHH-------------------HHHHHh-h
Q 001668 6 PEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-------------------FDILMQ-Y 65 (1034)
Q Consensus 6 ~~L~~~~~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v-------------------~~~l~~-~ 65 (1034)
+.|.....+++|+++||..+.|++|+ +|+...++|||.++.||+|+..++ |..+.+ .
T Consensus 1280 r~ia~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a 1356 (1674)
T KOG0951|consen 1280 RYIASQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA 1356 (1674)
T ss_pred HHHHHHHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh
Confidence 34445556789999999999999999 899999999999999999997654 333433 3
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHH
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145 (1034)
Q Consensus 66 ~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ 145 (1034)
..+++++||+++|+.|..+|..+....... . ..-+-.... ..|..|++.|.+||+ |.||+..+...
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~--~---------~~~l~~~~e-~~~~~l~e~l~~gvg--~e~~s~~d~~i 1422 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHAD--E---------PDYLLSELE-ECDETLRESLKHGVG--HEGLSSNDQEI 1422 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccC--c---------HHHHHHHHh-cchHhhhhccccccc--ccccCcchHHH
Confidence 567899999999999999998876553211 0 011111111 157789999999999 99999999999
Q ss_pred HHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccH
Q 001668 146 IEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV 225 (1034)
Q Consensus 146 ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~ 225 (1034)
+-.+|..|.|+|+|...- +||+-+.++.||++||++||+..+.|.+|++.+.+||+|+|.| .|.|+++|...++
T Consensus 1423 v~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k 1496 (1674)
T KOG0951|consen 1423 VQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG-----AGKCVIMCHTPKK 1496 (1674)
T ss_pred HHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC-----CccEEEEecCchH
Confidence 999999999999999998 9999999999999999999999999999999999999999988 5799999999999
Q ss_pred HHHHHHhcCcccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHH
Q 001668 226 HLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCV 305 (1034)
Q Consensus 226 ~~y~~ll~~~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~ 305 (1034)
.||++++.++.|+||+|..+|+|++|+||+.++|.+.|+|+||++|+|+|+|+.+||+||++. |++..+++.+++++++
T Consensus 1497 ~yykkfl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~~~np~yy~l~-~v~~~~~S~~lS~lve 1575 (1674)
T KOG0951|consen 1497 EYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRLPQNPNYYNLQ-GVSHRHLSDFLSELVE 1575 (1674)
T ss_pred HHHHHhccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccccCcceeccc-ccchhhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 8899999999999999
Q ss_pred HHHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHH
Q 001668 306 QKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYI 348 (1034)
Q Consensus 306 ~~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f 348 (1034)
.++++|+..+||.++.... .+|.|+++|||.+-|+..|
T Consensus 1576 t~l~dl~~s~~i~v~dad~-----~l~~Ias~y~i~y~ti~~f 1613 (1674)
T KOG0951|consen 1576 TTLNDLEESKCIEVDDEDD-----SLGMIASYYYISYITIERF 1613 (1674)
T ss_pred HHHHHhhcCceEEeecccc-----ccchhhhhceeeeEeeehh
Confidence 9999999999999875544 3999999999888766544
No 10
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-37 Score=329.91 Aligned_cols=310 Identities=17% Similarity=0.118 Sum_probs=250.1
Q ss_pred HHhCCCCCChHHHHHHhhccccc-----cccccChhHHHHHhHhhhccCCcceeeecCCccccccccchhHHHHHHHHHH
Q 001668 348 IMQTPVNCGLEDALHTVCHAEEI-----AWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLAND 422 (1034)
Q Consensus 348 f~~~~~~~s~~~iL~iLs~S~EF-----~~i~lR~~Ek~~L~~L~~~~~~~l~~~i~~~~~~~~~~~~~~~~Ka~vLLqA 422 (1034)
|+...++|..+.+|.+||.|.|| +++.-|+.+..++.+|.+.. +--+.+++..+.....+.|+.+||+|
T Consensus 4 Fi~kTp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi------~~vN~K~kE~PL~~pYslKaRvlLha 77 (520)
T KOG4434|consen 4 FINRTPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQI------AGVNDKGKEQPLSQPYSLKARVLLHA 77 (520)
T ss_pred eeccCchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHc------ccccccccCCCccCchhHHHHHHHHH
Confidence 44566788899999999999999 46778888887777777542 11223444455667789999999999
Q ss_pred HhcCCCCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHh----------c--chHHHHHHHHHHHHHHhhcCCCCcccccc
Q 001668 423 CLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFR----------K--NYKGAVNSALLAKSLYQRLWDDSPYLLKQ 490 (1034)
Q Consensus 423 hl~r~~~~~d~sL~~D~~~Il~~a~rLl~am~eIa~~~----------~--~~~~~l~~l~L~q~L~QalW~~~~~~LlQ 490 (1034)
||+|.+... -+|..|..+|+..|++|++.|+.+.... + ...+.-|+|.|++|++||+|...+| |+|
T Consensus 78 hLsRmpl~~-dtLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSP-LLQ 155 (520)
T KOG4434|consen 78 HLSRMPLES-DTLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSP-LLQ 155 (520)
T ss_pred HHhcCCCCh-hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcCh-hhc
Confidence 999986444 3899999999999999999999876442 1 1335679999999999999998888 999
Q ss_pred cCCCCHHHHHHHHhC-CCCCHHHHhhCChHHHHHhhC-CCCchhHHHHHHHhcCCCeeEEEEE--------EEEeecCCe
Q 001668 491 LPGIGMVTAKALHSM-GIKSFETLAEADPRRIEIVTG-RKYPFGNHIKESLLSLPPKVDMKIE--------EIKCQGQGK 560 (1034)
Q Consensus 491 LP~I~~~~ak~L~~~-gi~Sl~~L~~~~~~~le~Ll~-~~~~~g~~I~~~~~~lP~~l~v~~k--------e~~v~~~~~ 560 (1034)
||||++..++++.++ .|+++++|+.+.++.+..|+. ++...+.+++.++..|| .|.++++ ...+++|++
T Consensus 156 LPHitednL~~~~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP-~~~~~ik~~V~dded~n~~TaG~v 234 (520)
T KOG4434|consen 156 LPHITEDNLQHLRKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMP-RLQIEIKTVVEDDEDKNELTAGCV 234 (520)
T ss_pred CCccchHHHHHHhhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCc-ceEEEeeEEEecCCcccceeeeeE
Confidence 999999999999754 599999999999888877664 77778899999999999 8999877 246999999
Q ss_pred EEEEEEEEEec---------------------------------------------------------------------
Q 001668 561 SKLLITLTRLS--------------------------------------------------------------------- 571 (1034)
Q Consensus 561 ~~l~Vkl~r~~--------------------------------------------------------------------- 571 (1034)
||+.|+++|..
T Consensus 235 VTv~Vtl~R~~l~d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~q 314 (520)
T KOG4434|consen 235 VTVKVTLRRSRLIDPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQ 314 (520)
T ss_pred EEEEEEEEeccccChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhh
Confidence 99999999961
Q ss_pred --------------------------------------------------------------------------------
Q 001668 572 -------------------------------------------------------------------------------- 571 (1034)
Q Consensus 572 -------------------------------------------------------------------------------- 571 (1034)
T Consensus 315 K~v~~~aas~at~ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtK 394 (520)
T KOG4434|consen 315 KFVKKNAASPATEKALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETK 394 (520)
T ss_pred hhcccccCChhhhhhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcc
Confidence
Q ss_pred ---------CCcccCccccceEEEEecCCCeEEEeeeeeeeccCcceEEEEEeeCCC-CceEEEEEEEEeCceeeccceE
Q 001668 572 ---------QSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQ-QGKLTVKADLIFEEYIGVDIHQ 641 (1034)
Q Consensus 572 ---------p~~~~~k~~~~wv~V~D~k~n~Il~~~ri~~~~~~~~~~v~l~f~aP~-~G~~~~~v~liSDsYvG~D~~~ 641 (1034)
|+||..+.+|||++|.|.+...++.. +..+.++....+|.+.|+||+ +|.|+|+|+|.||||+|+|+.+
T Consensus 395 s~~tHtVh~pyFPeEKqEwWW~Yi~drKsrtLlt~-PyhV~tL~d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~ 473 (520)
T KOG4434|consen 395 SKITHTVHSPYFPEEKQEWWWLYIADRKSRTLLTM-PYHVCTLKDTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIK 473 (520)
T ss_pred cccceeeccCCCcchhhheeeeeeecccccceecc-hhhhhcccccceeEEeccCCCCCCceEEEEEEecccccChhhcc
Confidence 13445566788999999999999865 454555567889999999997 8999999999999999999999
Q ss_pred EEEEEeecCcccccccCcCCCCCCCCCcccccccCCccc
Q 001668 642 KLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENET 680 (1034)
Q Consensus 642 ~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~i~~~~e~ 680 (1034)
.++|. +. .++++|..+.+|....+|+
T Consensus 474 ~lKld---------V~----eAk~vp~~Hpqwd~~~~e~ 499 (520)
T KOG4434|consen 474 PLKLD---------VH----EAKPVPENHPQWDTAIEED 499 (520)
T ss_pred ceeee---------ec----cCCCCCCCCcccccccccc
Confidence 99998 32 3566666666665554443
No 11
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=6.8e-33 Score=329.24 Aligned_cols=489 Identities=22% Similarity=0.311 Sum_probs=302.8
Q ss_pred CCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecchHHHH------HHH-----H---------------------
Q 001668 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV------FDI-----L--------------------- 62 (1034)
Q Consensus 15 ~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v------~~~-----l--------------------- 62 (1034)
.+|+||||||+||..+++.||.+. .+...+|||||.+.+ |+. +
T Consensus 377 ~~~iIGMSATi~N~~lL~~~L~A~-----~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~ 451 (1008)
T KOG0950|consen 377 SVQIIGMSATIPNNSLLQDWLDAF-----VYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVG 451 (1008)
T ss_pred ceeEeeeecccCChHHHHHHhhhh-----heecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceee
Confidence 489999999999999999999865 477789999998765 111 0
Q ss_pred ---HhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcC--cHHHHHHHHHhhhccChhhhhhhhhcceEEccCC
Q 001668 63 ---MQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIK--DREQQERLREASLSCSDKQMQSYILYGVGYHNGG 137 (1034)
Q Consensus 63 ---~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~--~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~g 137 (1034)
....++.++||||++|+.|+.+|..+............+.. ...............-|..|+..+.+||+|||+|
T Consensus 452 L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaG 531 (1008)
T KOG0950|consen 452 LCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAG 531 (1008)
T ss_pred ehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccc
Confidence 11234677999999999999999888766443211111111 0000011111122344677999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEE
Q 001668 138 LCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI 217 (1034)
Q Consensus 138 Ls~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~ai 217 (1034)
|+.++|+.||..|++|.++|++||+||++|||+||++|||... +|.. ...+..+|.||+|||||.|.|+-|.+|
T Consensus 532 LT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP-~~g~-----~~l~~~~YkQM~GRAGR~gidT~Gdsi 605 (1008)
T KOG0950|consen 532 LTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAP-YVGR-----EFLTRLEYKQMVGRAGRTGIDTLGDSI 605 (1008)
T ss_pred cccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCC-cccc-----chhhhhhHHhhhhhhhhcccccCcceE
Confidence 9999999999999999999999999999999999999999855 2222 346889999999999999999999999
Q ss_pred EEeccccHHHHHHHhcC-cccccchhhhhh----hhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCC
Q 001668 218 IMTRRETVHLYENLLNG-CEMVESQLLSCV----TEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVIS 292 (1034)
Q Consensus 218 il~~~~~~~~y~~ll~~-~~pieS~L~~~L----~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s 292 (1034)
+++.+.+...+..+++. ..|+.|+|.... ...+..-|..+...+.+|...++..|+++.+.. |.+-...-+..
T Consensus 606 LI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q~~--~~~~~~~le~~ 683 (1008)
T KOG0950|consen 606 LIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQEK--PENVREQLEME 683 (1008)
T ss_pred EEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhcccc--hhhhhhcccch
Confidence 99999998888899988 567888885421 123444556667778889899999999987632 11111111111
Q ss_pred hhH--HHHHHHHHHHHHHHHHHHCCCcEE-cCCCCccccCCCcccccccccchhhHHHHHh-C---CCCCChHHHHHHhh
Q 001668 293 RDR--IEKHMQEVCVQKVDELSCHQMIWT-DEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-T---PVNCGLEDALHTVC 365 (1034)
Q Consensus 293 ~~~--l~~~l~~l~~~~l~~L~~~~~I~~-d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~-~---~~~~s~~~iL~iLs 365 (1034)
.+. +..... +.+.++.+|+. ..+.....+|++|+.+=.-.+++.-+..++. + .+......-++.|-
T Consensus 684 s~ql~~~~~~~-------d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~~lh~ly 756 (1008)
T KOG0950|consen 684 SDQLVINDFKS-------DQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLESSLHLLY 756 (1008)
T ss_pred hhhhccchhhH-------HHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccccccceee
Confidence 111 111100 11222222210 0001111268888876666666665544432 1 11111111111110
Q ss_pred ccc-------ccccc-------ccChhHHHHHhHhhhccCCcceeeecCCc--cccccccchhHHHHHHHHHHHhcCCCC
Q 001668 366 HAE-------EIAWI-------QLRRNEKKLLNVINIDKDGRLRFHINGDK--GKRKKRIQTREEKIFVLANDCLIGDPS 429 (1034)
Q Consensus 366 ~S~-------EF~~i-------~lR~~Ek~~L~~L~~~~~~~l~~~i~~~~--~~~~~~~~~~~~Ka~vLLqAhl~r~~~ 429 (1034)
.-. ...++ .+.+.++...+.+..... -+...+.|.. ......+..+...+.+| +..+...+.
T Consensus 757 lvtP~~~~~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~-fi~~~~~gqs~~~~~~~~~~~r~y~~l~L-~~li~espi 834 (1008)
T KOG0950|consen 757 LVTPYLEVMNDIDWLIYFQIYHTLPSPEQKLAKLLGVIES-FIEKCVSGQSVRNLQNVQKRKRLYVALAL-QKLINESPI 834 (1008)
T ss_pred eecchHhhcccccHHHHHHHHhcCCcHHHHHHhhhchHHH-HHHHhhhccccccccchhHHHHHHHHHHH-HHHHhhCcH
Confidence 000 01111 123344443333321100 0000011100 00011111222333333 444444321
Q ss_pred CC---Cc-chhhHHHHHHHHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhcCCCCcccccccCCCCHHHHHHHHhC
Q 001668 430 VH---DL-SLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSM 505 (1034)
Q Consensus 430 ~~---d~-sL~~D~~~Il~~a~rLl~am~eIa~~~~~~~~~l~~l~L~q~L~QalW~~~~~~LlQLP~I~~~~ak~L~~~ 505 (1034)
.. ++ -.+.-....++++.+++.+..-+|..-.|..--...-++.++|.-+.-.+..+ |..+|++...+++.|+.+
T Consensus 835 ~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~~g~~~eL~~-Lmrv~~~~~~RAr~lf~A 913 (1008)
T KOG0950|consen 835 RTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLSFGGHAELIP-LMRVPDVKAERARQLFKA 913 (1008)
T ss_pred HHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHhccchhhhhh-hhcCchhHHHHHHHHHHh
Confidence 10 11 11223456788888888888888877777622223335777777777778777 999999999999999999
Q ss_pred CCCCHHHHhhCChHHHHHhhC
Q 001668 506 GIKSFETLAEADPRRIEIVTG 526 (1034)
Q Consensus 506 gi~Sl~~L~~~~~~~le~Ll~ 526 (1034)
|++|+.+++++.+.++..-+.
T Consensus 914 gf~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 914 GFTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred hccchHHHhcCChHHHHHHhh
Confidence 999999999999999987664
No 12
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.3e-28 Score=281.95 Aligned_cols=255 Identities=30% Similarity=0.447 Sum_probs=195.0
Q ss_pred CCCCcEEEEccCccCHHHHHHHhC-CCCCcEEeccccceecchHHHHH----------------------HH----HH--
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLN-VPVQGIKRFGEEMRPVKLTTKVF----------------------DI----LM-- 63 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL~-~~~~~i~~f~~~~Rpv~L~~~v~----------------------~~----l~-- 63 (1034)
+.++|.|.|||||||+.++|+|+. .+.+.++.+..+|||.||++++| .. +.
T Consensus 264 P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 264 PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 568999999999999999999994 45667788889999999988752 11 10
Q ss_pred -----------------------------------hhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcH--H
Q 001668 64 -----------------------------------QYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR--E 106 (1034)
Q Consensus 64 -----------------------------------~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~--~ 106 (1034)
-..+..|+|||+-+|++|+..|..+...- |-.+. +
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kld--------fN~deEk~ 415 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLD--------FNTDEEKE 415 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCc--------CCChhHHH
Confidence 01123589999999999999998886541 11111 2
Q ss_pred HHHHH-HHh--hhccChhhh------hhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEE
Q 001668 107 QQERL-REA--SLSCSDKQM------QSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVI 177 (1034)
Q Consensus 107 ~~~~l-~~~--~~~~~d~~L------~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI 177 (1034)
..+.+ ..+ .++-+|+.| ..+|++|||+||+||-+--++.||-+|.+|.++||+||.|+++|+|+||.+||+
T Consensus 416 ~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF 495 (1041)
T KOG0948|consen 416 LVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF 495 (1041)
T ss_pred HHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE
Confidence 22332 222 234445554 467899999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccc-cHHHHHHHhcC-cccccchhhhhhhhhhHHHHH
Q 001668 178 KSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE-TVHLYENLLNG-CEMVESQLLSCVTEHLTAEIV 255 (1034)
Q Consensus 178 ~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~-~~~~y~~ll~~-~~pieS~L~~~L~d~l~aEI~ 255 (1034)
..-+.||+...+| ++.-+|+||.|||||.|.|..|.||++.++. +.+..+.++++ ..|+.|.++-...-.||-.-+
T Consensus 496 T~~rKfDG~~fRw--issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlRv 573 (1041)
T KOG0948|consen 496 TAVRKFDGKKFRW--ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLRV 573 (1041)
T ss_pred eeccccCCcceee--ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHH
Confidence 9999999999888 5788999999999999999999999888774 45667888888 789999987655555554333
Q ss_pred hcccCCHHHHHHH-HHHhhh-HhhhhcCCC
Q 001668 256 QMTVSDITQAIEW-MKCSYL-YVRMKKNPQ 283 (1034)
Q Consensus 256 ~g~i~~~~~aidw-l~~Tfl-y~rl~~nP~ 283 (1034)
.+. +. +| |..+|+ |+-..+-|.
T Consensus 574 Eei--~p----e~~l~~SF~QFQ~~~~~P~ 597 (1041)
T KOG0948|consen 574 EEI--SP----EYMLERSFHQFQNYKALPD 597 (1041)
T ss_pred ccC--CH----HHHHHHHHHHHhhhhhcch
Confidence 321 22 44 566665 444455453
No 13
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.95 E-value=8.3e-27 Score=263.11 Aligned_cols=289 Identities=25% Similarity=0.337 Sum_probs=201.8
Q ss_pred CCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecchHHHH---------HHHHH---------hhcC--CCcEEE
Q 001668 14 ASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV---------FDILM---------QYSR--GKSALV 73 (1034)
Q Consensus 14 ~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v---------~~~l~---------~~~~--~~~~LV 73 (1034)
+..|+|+||||+.|++++|+.||+.. +..+.||||+..++ ++++. ..+. .+|+||
T Consensus 371 ~~AQ~i~LSATVgNp~elA~~l~a~l-----V~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIV 445 (830)
T COG1202 371 PGAQFIYLSATVGNPEELAKKLGAKL-----VLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIV 445 (830)
T ss_pred CCCeEEEEEeecCChHHHHHHhCCee-----EeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEE
Confidence 47999999999999999999999875 44577999998775 22221 1122 379999
Q ss_pred EcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcC
Q 001668 74 FCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG 153 (1034)
Q Consensus 74 Fv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G 153 (1034)
|++||+.|..+|..|... |. .+++|||||+..+|+.||.+|.++
T Consensus 446 FT~SRrr~h~lA~~L~~k----G~--------------------------------~a~pYHaGL~y~eRk~vE~~F~~q 489 (830)
T COG1202 446 FTYSRRRCHELADALTGK----GL--------------------------------KAAPYHAGLPYKERKSVERAFAAQ 489 (830)
T ss_pred EecchhhHHHHHHHhhcC----Cc--------------------------------ccccccCCCcHHHHHHHHHHHhcC
Confidence 999999999999998754 22 177899999999999999999999
Q ss_pred CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc---------
Q 001668 154 DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET--------- 224 (1034)
Q Consensus 154 ~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~--------- 224 (1034)
.+.++|+|..|+.|||+||..||+-.--. | ..-+++.+|.||+||||||+|+..|++++++....
T Consensus 490 ~l~~VVTTAAL~AGVDFPASQVIFEsLaM-----G-~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~T 563 (830)
T COG1202 490 ELAAVVTTAALAAGVDFPASQVIFESLAM-----G-IEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEET 563 (830)
T ss_pred CcceEeehhhhhcCCCCchHHHHHHHHHc-----c-cccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhccccccc
Confidence 99999999999999999999998743210 0 02378999999999999999999999999976432
Q ss_pred -HHHHHHHhcC-cccccchhhh-hhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHH
Q 001668 225 -VHLYENLLNG-CEMVESQLLS-CVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQ 301 (1034)
Q Consensus 225 -~~~y~~ll~~-~~pieS~L~~-~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~ 301 (1034)
...--+++++ ++|+.-.... .-.+.+.| ..|...+..+ ++-+ |+...|- ..+.
T Consensus 564 EdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~-i~~v-----------~~~~~g~--~~~~-------- 619 (830)
T COG1202 564 EDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSV-IERV-----------NSLMLGA--AFDP-------- 619 (830)
T ss_pred HHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHH-Hhhc-----------Chhhccc--cCCH--------
Confidence 2233455655 6665444332 11222333 1222222221 1111 1111111 0111
Q ss_pred HHHHHHHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHh-CCCCCChHHHHHHhhccccccccccChhHH
Q 001668 302 EVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEK 380 (1034)
Q Consensus 302 ~l~~~~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~-~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek 380 (1034)
..+|..|+++|||. .+|+.+++|+.|+++|.+++.+.++..+.. ...++.+ +.+++.-.=|...++...=+
T Consensus 620 ---~k~l~~Lee~g~i~--~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~~p---l~i~~~l~pfE~ayls~~l~ 691 (830)
T COG1202 620 ---KKALSKLEEYGMIK--KKGNIVRPTPYGRAVAMSFLGPSEAEFIREGVLASMDP---LRIAAELEPFENAYLSGFLK 691 (830)
T ss_pred ---HHHHHHHHhcCCee--ccCCEeeeccccceeEEeecCchHHHHHHHhhhccCCh---HhHhhccccccccccChHHH
Confidence 24677899999994 456678999999999999999999998876 3444444 34444444555555544433
Q ss_pred H
Q 001668 381 K 381 (1034)
Q Consensus 381 ~ 381 (1034)
.
T Consensus 692 r 692 (830)
T COG1202 692 R 692 (830)
T ss_pred H
Confidence 3
No 14
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=3.1e-27 Score=278.48 Aligned_cols=225 Identities=33% Similarity=0.471 Sum_probs=178.4
Q ss_pred CCCCcEEEEccCccCHHHHHHHhCCCC-CcEEeccccceecchHHHHH------------------------HHHH----
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLNVPV-QGIKRFGEEMRPVKLTTKVF------------------------DILM---- 63 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL~~~~-~~i~~f~~~~Rpv~L~~~v~------------------------~~l~---- 63 (1034)
+.++++|+||||+||..++|.|+|..+ ..|++.+...|||||+..+| +.+.
T Consensus 432 P~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak 511 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAK 511 (1248)
T ss_pred cccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccc
Confidence 568999999999999999999999754 46778888899999976431 0110
Q ss_pred ---------------------------------------------------hhcCCCcEEEEcCCHHHHHHHHHHHHHHH
Q 001668 64 ---------------------------------------------------QYSRGKSALVFCSTRKGAQEAAQQLSQTA 92 (1034)
Q Consensus 64 ---------------------------------------------------~~~~~~~~LVFv~sRk~~e~lA~~L~~~~ 92 (1034)
....--|++|||-+|+.|+..|..|...
T Consensus 512 ~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~- 590 (1248)
T KOG0947|consen 512 FVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNL- 590 (1248)
T ss_pred ccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhcc-
Confidence 0001136999999999999999999753
Q ss_pred hhcCCCCCCcCcHHHHH--H-HHH--hhhccChhh------hhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEec
Q 001668 93 MTYGYSNPFIKDREQQE--R-LRE--ASLSCSDKQ------MQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161 (1034)
Q Consensus 93 ~~~g~~~~~~~~~~~~~--~-l~~--~~~~~~d~~------L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT 161 (1034)
.+....+..+ - +.. ..+..+|+. +.+++.+|+|.||||+-+--++.||-+|..|.++||+||
T Consensus 591 -------nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 591 -------NLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred -------CcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 1122222111 1 111 123445654 467788999999999999999999999999999999999
Q ss_pred cccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccc--cHHHHHHHhcC-cccc
Q 001668 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE--TVHLYENLLNG-CEMV 238 (1034)
Q Consensus 162 ~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~--~~~~y~~ll~~-~~pi 238 (1034)
.|+|||||+||.+||+.+.+..++... ..+.+.+|.||+|||||.|.|..|.+||++... .....++++.+ +.++
T Consensus 664 ETFAMGVNMPARtvVF~Sl~KhDG~ef--R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L 741 (1248)
T KOG0947|consen 664 ETFAMGVNMPARTVVFSSLRKHDGNEF--RELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRL 741 (1248)
T ss_pred hhhhhhcCCCceeEEeeehhhccCcce--eecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchh
Confidence 999999999999999999988888764 568999999999999999999999999999874 56677888877 8999
Q ss_pred cchhhhhhh
Q 001668 239 ESQLLSCVT 247 (1034)
Q Consensus 239 eS~L~~~L~ 247 (1034)
+||+.-...
T Consensus 742 ~SQFRlTY~ 750 (1248)
T KOG0947|consen 742 ESQFRLTYG 750 (1248)
T ss_pred hhhhhhHHH
Confidence 999876433
No 15
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.91 E-value=8.8e-24 Score=267.03 Aligned_cols=231 Identities=22% Similarity=0.358 Sum_probs=162.8
Q ss_pred hhhhcCCCCCcEEEEccCccCHHHHHHHhCCC-----CCcEEecccc-ce--------ec---------chHHHHHHHHH
Q 001668 7 EMKSSSLASVRFLAVSATIPNIEDIAEWLNVP-----VQGIKRFGEE-MR--------PV---------KLTTKVFDILM 63 (1034)
Q Consensus 7 ~L~~~~~~~~riI~lSATlpn~~dla~wL~~~-----~~~i~~f~~~-~R--------pv---------~L~~~v~~~l~ 63 (1034)
+|+...+.++|+|+||||++|.+++++||+.. ...+...... .+ |. .....++..+.
T Consensus 199 rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~ 278 (876)
T PRK13767 199 RLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLH 278 (876)
T ss_pred HHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHH
Confidence 44444456899999999999999999999753 1111111110 00 10 11123344443
Q ss_pred h-hcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHH
Q 001668 64 Q-YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKD 142 (1034)
Q Consensus 64 ~-~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~d 142 (1034)
. ...++++|||||||+.|+.++..|...... .+...+|++|||+|++++
T Consensus 279 ~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~------------------------------~~~~~~i~~hHg~ls~~~ 328 (876)
T PRK13767 279 ELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE------------------------------EYDEDNIGAHHSSLSREV 328 (876)
T ss_pred HHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh------------------------------hccccceeeeeCCCCHHH
Confidence 2 345789999999999999999998764211 012457999999999999
Q ss_pred HHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCC-CccEEEEEec
Q 001668 143 RNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFN-DTGTVIIMTR 221 (1034)
Q Consensus 143 R~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d-~~G~aiil~~ 221 (1034)
|..+++.|++|.++|||||++|++|||+|++++||+++ .|.++.+|+||+|||||.+.. ..|.++....
T Consensus 329 R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~----------~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 329 RLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLG----------SPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred HHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeC----------CCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 99999999999999999999999999999999999876 688999999999999997422 2344444322
Q ss_pred cccHH---HHHHHhcC-cccccc--hhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhh
Q 001668 222 RETVH---LYENLLNG-CEMVES--QLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRM 278 (1034)
Q Consensus 222 ~~~~~---~y~~ll~~-~~pieS--~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl 278 (1034)
.+-.+ ..+.+..+ .+++.. .-...|..|+.+.++.+ ..+.+++.+|++.||.|+.+
T Consensus 399 ~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l 460 (876)
T PRK13767 399 DDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDIEEAYNIVRRAYPYRDL 460 (876)
T ss_pred hhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCHHHHHHHHhccCCcccC
Confidence 22111 12233333 333322 23447889999877664 67899999999999999854
No 16
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.91 E-value=1.5e-23 Score=269.15 Aligned_cols=253 Identities=17% Similarity=0.213 Sum_probs=167.8
Q ss_pred hhhhhcCCCCCcEEEEccCccCHHHHHHHhCCC-CCcEEeccccceecch------------------------------
Q 001668 6 PEMKSSSLASVRFLAVSATIPNIEDIAEWLNVP-VQGIKRFGEEMRPVKL------------------------------ 54 (1034)
Q Consensus 6 ~~L~~~~~~~~riI~lSATlpn~~dla~wL~~~-~~~i~~f~~~~Rpv~L------------------------------ 54 (1034)
.||+.....++|+|+||||++|.+++++||+.. +..++. .+..+++++
T Consensus 150 eRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~ 228 (1490)
T PRK09751 150 ERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGS 228 (1490)
T ss_pred HHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhh
Confidence 455555567899999999999999999999764 222221 111111110
Q ss_pred -HHHHH-HHHHhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhh---hhc
Q 001668 55 -TTKVF-DILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSY---ILY 129 (1034)
Q Consensus 55 -~~~v~-~~l~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~---l~~ 129 (1034)
...++ ..+.....++++|||||||+.|+.++..|.+...+.... .. ........+... .+.....+ ...
T Consensus 229 i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~-~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~ 302 (1490)
T PRK09751 229 IWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR-SP-SIAVDAAHFEST----SGATSNRVQSSDVF 302 (1490)
T ss_pred hhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc-cc-cccchhhhhhhc----cccchhccccccce
Confidence 00111 223334567899999999999999999997653211000 00 000000000000 01111111 123
Q ss_pred ceEEccCCCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCC
Q 001668 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPP 209 (1034)
Q Consensus 130 GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g 209 (1034)
.+.+|||+|++++|..||+.|++|.+++||||++|++|||+|++++||+++ .|+++.+|+||+|||||.
T Consensus 303 ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~g----------sP~sVas~LQRiGRAGR~- 371 (1490)
T PRK09751 303 IARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVA----------TPLSVASGLQRIGRAGHQ- 371 (1490)
T ss_pred eeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeC----------CCCCHHHHHHHhCCCCCC-
Confidence 478999999999999999999999999999999999999999999999977 789999999999999997
Q ss_pred CCCccEEEEEeccccH--H---HHHHHhcC-cccccch--hhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhh
Q 001668 210 FNDTGTVIIMTRRETV--H---LYENLLNG-CEMVESQ--LLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVR 277 (1034)
Q Consensus 210 ~d~~G~aiil~~~~~~--~---~y~~ll~~-~~pieS~--L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~r 277 (1034)
.+..+.++++...... + ..+.++.+ .+++... -...|..|+.+.++.+. -+.++..+.++.+|-|+.
T Consensus 372 ~gg~s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~-~~~d~l~~~vrra~pf~~ 446 (1490)
T PRK09751 372 VGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDA-LQVDEWYSRVRRAAPWKD 446 (1490)
T ss_pred CCCccEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCC-CCHHHHHHHhhccCCccc
Confidence 4567777766554321 1 23345554 3443332 33478899999888654 457888888888888863
No 17
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=2.5e-22 Score=249.38 Aligned_cols=183 Identities=22% Similarity=0.247 Sum_probs=135.4
Q ss_pred CCCChhhhhcCCCCCcEEEEccCccCHHHHHHHhCCCCCcEEecccc---------ceec----------ch----HHHH
Q 001668 2 LACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEE---------MRPV----------KL----TTKV 58 (1034)
Q Consensus 2 l~~l~~L~~~~~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~---------~Rpv----------~L----~~~v 58 (1034)
+++++++....+.++|+|++|||++|..++++++...+..+...+.. +.|. +. ....
T Consensus 181 l~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~ 260 (742)
T TIGR03817 181 LRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEA 260 (742)
T ss_pred HHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHH
Confidence 45667777667788999999999999888887764332111100000 0110 00 0111
Q ss_pred HHHH-HhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCC
Q 001668 59 FDIL-MQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGG 137 (1034)
Q Consensus 59 ~~~l-~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~g 137 (1034)
...+ .....+.++||||+||+.|+.++..|.......+ ..+..+|..||||
T Consensus 261 ~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~----------------------------~~l~~~v~~~hgg 312 (742)
T TIGR03817 261 ADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVD----------------------------PDLAERVAAYRAG 312 (742)
T ss_pred HHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc----------------------------cccccchhheecC
Confidence 1222 1223578999999999999999999876432110 1123458899999
Q ss_pred CCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEE
Q 001668 138 LCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI 217 (1034)
Q Consensus 138 Ls~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~ai 217 (1034)
+++++|..+++.|++|.+++||||++|++|||+|++++||+++ .|.++.+|+||+|||||.| ..|.++
T Consensus 313 ~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~----------~P~s~~~y~qRiGRaGR~G--~~g~ai 380 (742)
T TIGR03817 313 YLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAG----------FPGTRASLWQQAGRAGRRG--QGALVV 380 (742)
T ss_pred CCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeC----------CCCCHHHHHHhccccCCCC--CCcEEE
Confidence 9999999999999999999999999999999999999999977 7889999999999999998 789999
Q ss_pred EEecccc
Q 001668 218 IMTRRET 224 (1034)
Q Consensus 218 il~~~~~ 224 (1034)
+++..+.
T Consensus 381 ~v~~~~~ 387 (742)
T TIGR03817 381 LVARDDP 387 (742)
T ss_pred EEeCCCh
Confidence 8886543
No 18
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.1e-22 Score=247.67 Aligned_cols=251 Identities=32% Similarity=0.436 Sum_probs=180.9
Q ss_pred CCCCCcEEEEccCccCHHHHHHHhCC-CCCcEEeccccceecchHHHHHH------H------------------HH---
Q 001668 12 SLASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTKVFD------I------------------LM--- 63 (1034)
Q Consensus 12 ~~~~~riI~lSATlpn~~dla~wL~~-~~~~i~~f~~~~Rpv~L~~~v~~------~------------------l~--- 63 (1034)
.+..+|+|+||||+||+.+++.|++. ....++.+..+.||+||..+++. . +.
T Consensus 257 lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~ 336 (1041)
T COG4581 257 LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFS 336 (1041)
T ss_pred cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccc
Confidence 35689999999999999999999984 45567888899999999765410 0 00
Q ss_pred ----h----------------------------------hcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcH
Q 001668 64 ----Q----------------------------------YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR 105 (1034)
Q Consensus 64 ----~----------------------------------~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~ 105 (1034)
+ ..+.-|+|+|+-+|+.|+..|..+...-.. ....+
T Consensus 337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~------~~~~~ 410 (1041)
T COG4581 337 EKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLV------LTEEK 410 (1041)
T ss_pred hhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccc------cCCcH
Confidence 0 012347999999999999999988632110 00111
Q ss_pred HH--HHHHHHhhh--cc-------ChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeE
Q 001668 106 EQ--QERLREASL--SC-------SDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHT 174 (1034)
Q Consensus 106 ~~--~~~l~~~~~--~~-------~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~ 174 (1034)
+. ...+..+.. .. +-..+...|..|+|+||+||-+..|..||.+|..|.++|++||.|++.|+|+|+.+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 11 112222222 11 22445678899999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecc-cc-HHHHHHHhcC-cccccchhhhhhhhhhH
Q 001668 175 VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR-ET-VHLYENLLNG-CEMVESQLLSCVTEHLT 251 (1034)
Q Consensus 175 vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~-~~-~~~y~~ll~~-~~pieS~L~~~L~d~l~ 251 (1034)
||+.....|++...+ .++..+|.||.|||||.|+|..|.+|++... .. ..-...+..+ ..++.|++...+.-.+|
T Consensus 491 vv~~~l~K~dG~~~r--~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~miln 568 (1041)
T COG4581 491 VVFTSLSKFDGNGHR--WLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILN 568 (1041)
T ss_pred eeeeeeEEecCCcee--ecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHh
Confidence 999999999987764 5789999999999999999999999988443 22 3344445555 67777777654433333
Q ss_pred HHHHhcccCCHHHHHHHHHHhhh
Q 001668 252 AEIVQMTVSDITQAIEWMKCSYL 274 (1034)
Q Consensus 252 aEI~~g~i~~~~~aidwl~~Tfl 274 (1034)
...+...+.+-..+..+|.
T Consensus 569 ----ll~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 569 ----LLRVEGLQTAEDLLERSFA 587 (1041)
T ss_pred ----hhhhcccCcHHHHHHhhHH
Confidence 2233333333345555554
No 19
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=229.48 Aligned_cols=225 Identities=20% Similarity=0.279 Sum_probs=172.0
Q ss_pred CChhhhhcCCCCCcEEEEccCccCHHHHHHHhCCCC--CcEEeccccc-------eecch-------HHHHHHHH-Hhhc
Q 001668 4 CNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPV--QGIKRFGEEM-------RPVKL-------TTKVFDIL-MQYS 66 (1034)
Q Consensus 4 ~l~~L~~~~~~~~riI~lSATlpn~~dla~wL~~~~--~~i~~f~~~~-------Rpv~L-------~~~v~~~l-~~~~ 66 (1034)
.+.||+...+ ++|.||||||+.+++++|+||+... ..|....... .|.+. ....+..+ ....
T Consensus 173 ~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~ 251 (814)
T COG1201 173 SLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVK 251 (814)
T ss_pred hHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHh
Confidence 3567777777 9999999999999999999997653 2222111110 12111 12223333 3345
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
+.+.+|||+|||..|+.++..|.+... ..|+.|||+|+.+.|..+
T Consensus 252 ~~~ttLIF~NTR~~aE~l~~~L~~~~~-----------------------------------~~i~~HHgSlSre~R~~v 296 (814)
T COG1201 252 KHRTTLIFTNTRSGAERLAFRLKKLGP-----------------------------------DIIEVHHGSLSRELRLEV 296 (814)
T ss_pred hcCcEEEEEeChHHHHHHHHHHHHhcC-----------------------------------CceeeecccccHHHHHHH
Confidence 567999999999999999999977521 349999999999999999
Q ss_pred HHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHH
Q 001668 147 EGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVH 226 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~ 226 (1034)
|+.|++|.++++|||++|+.|||+..+..||++. .|.+++.++||+||+|+.- +...++++++.. ..+
T Consensus 297 E~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~----------SP~sV~r~lQRiGRsgHr~-~~~Skg~ii~~~-r~d 364 (814)
T COG1201 297 EERLKEGELKAVVATSSLELGIDIGDIDLVIQLG----------SPKSVNRFLQRIGRAGHRL-GEVSKGIIIAED-RDD 364 (814)
T ss_pred HHHHhcCCceEEEEccchhhccccCCceEEEEeC----------CcHHHHHHhHhcccccccc-CCcccEEEEecC-HHH
Confidence 9999999999999999999999999999999876 7889999999999999863 567788888766 222
Q ss_pred H------HHHHhcC---cccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhh
Q 001668 227 L------YENLLNG---CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVR 277 (1034)
Q Consensus 227 ~------y~~ll~~---~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~r 277 (1034)
+ ...+..+ ..++.-.-+..|..|+.+.+... ..+.+++.+.++.+|.|+.
T Consensus 365 llE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~ 423 (814)
T COG1201 365 LLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYAD 423 (814)
T ss_pred HHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhcccccc
Confidence 2 3333333 23344444568889999988887 7899999999999998874
No 20
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.86 E-value=1.8e-21 Score=218.73 Aligned_cols=165 Identities=23% Similarity=0.354 Sum_probs=130.6
Q ss_pred CcEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchHHHH---------HHHH---HhhcCCCcEEEEcCCHHHHH
Q 001668 16 VRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV---------FDIL---MQYSRGKSALVFCSTRKGAQ 82 (1034)
Q Consensus 16 ~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v---------~~~l---~~~~~~~~~LVFv~sRk~~e 82 (1034)
.|++.||||+|. ++.+|+-.-..+. +...+...+|.+..++. +..| .......|+|||+|+++.|+
T Consensus 453 rqT~mftatm~p~verlar~ylr~pv-~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d 531 (673)
T KOG0333|consen 453 RQTVMFTATMPPAVERLARSYLRRPV-VVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGAD 531 (673)
T ss_pred eEEEEEecCCChHHHHHHHHHhhCCe-EEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHH
Confidence 899999999997 7888864433332 22344444555543322 2222 22234679999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEecc
Q 001668 83 EAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTN 162 (1034)
Q Consensus 83 ~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~ 162 (1034)
.+|+.|.+. | +.+..+|||-++++|+.+++.|++|...|||||+
T Consensus 532 ~lAk~LeK~----g--------------------------------~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD 575 (673)
T KOG0333|consen 532 ALAKILEKA----G--------------------------------YKVTTLHGGKSQEQRENALADFREGTGDILVATD 575 (673)
T ss_pred HHHHHHhhc----c--------------------------------ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec
Confidence 999998764 2 2378899999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHH
Q 001668 163 TLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYE 229 (1034)
Q Consensus 163 tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~ 229 (1034)
+++||||+|+|.+||+|+ ++.++.+|.||+||+||+| ++|.|+.|....+-..|.
T Consensus 576 vAgRGIDIpnVSlVinyd----------maksieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v~y 630 (673)
T KOG0333|consen 576 VAGRGIDIPNVSLVINYD----------MAKSIEDYTHRIGRTGRAG--KSGTAISFLTPADTAVFY 630 (673)
T ss_pred ccccCCCCCccceeeecc----------hhhhHHHHHHHhccccccc--cCceeEEEeccchhHHHH
Confidence 999999999999999988 7889999999999999998 999999777766644443
No 21
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=3.9e-21 Score=222.70 Aligned_cols=170 Identities=24% Similarity=0.371 Sum_probs=129.9
Q ss_pred hhhhcC-CCCCcEEEEccCccC-HHHHHH-HhCCCCCcEEeccc-c-ceecchHH------------HHHHHHHhhc--C
Q 001668 7 EMKSSS-LASVRFLAVSATIPN-IEDIAE-WLNVPVQGIKRFGE-E-MRPVKLTT------------KVFDILMQYS--R 67 (1034)
Q Consensus 7 ~L~~~~-~~~~riI~lSATlpn-~~dla~-wL~~~~~~i~~f~~-~-~Rpv~L~~------------~v~~~l~~~~--~ 67 (1034)
++.+.. +...|++++|||.|. ++.+|. ||+ ++..+..... . .....+.+ .+...|..+. .
T Consensus 262 ~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~ 340 (519)
T KOG0331|consen 262 KILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDS 340 (519)
T ss_pred HHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccC
Confidence 334444 445589999999995 888886 555 5433332211 1 11111111 1233344443 5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
++++||||+|++.|+.++..|... + +++..+||+.++.+|..++
T Consensus 341 ~~KvIIFc~tkr~~~~l~~~l~~~----~--------------------------------~~a~~iHGd~sQ~eR~~~L 384 (519)
T KOG0331|consen 341 EGKVIIFCETKRTCDELARNLRRK----G--------------------------------WPAVAIHGDKSQSERDWVL 384 (519)
T ss_pred CCcEEEEecchhhHHHHHHHHHhc----C--------------------------------cceeeecccccHHHHHHHH
Confidence 679999999999999999998764 1 2377899999999999999
Q ss_pred HHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccH
Q 001668 148 GLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV 225 (1034)
Q Consensus 148 ~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~ 225 (1034)
+.|++|...|||||+++|||+|+|+|.+||+++ .|.++++|+||+||+||+| ..|.++++....+.
T Consensus 385 ~~FreG~~~vLVATdVAaRGLDi~dV~lVInyd----------fP~~vEdYVHRiGRTGRa~--~~G~A~tfft~~~~ 450 (519)
T KOG0331|consen 385 KGFREGKSPVLVATDVAARGLDVPDVDLVINYD----------FPNNVEDYVHRIGRTGRAG--KKGTAITFFTSDNA 450 (519)
T ss_pred HhcccCCcceEEEcccccccCCCccccEEEeCC----------CCCCHHHHHhhcCccccCC--CCceEEEEEeHHHH
Confidence 999999999999999999999999999999988 7899999999999999987 89999977665543
No 22
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6e-21 Score=200.42 Aligned_cols=172 Identities=23% Similarity=0.369 Sum_probs=133.9
Q ss_pred CCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchHHH---------HHHHHHhh---cCCCcEEEEcCCH
Q 001668 12 SLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLTTK---------VFDILMQY---SRGKSALVFCSTR 78 (1034)
Q Consensus 12 ~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~---------v~~~l~~~---~~~~~~LVFv~sR 78 (1034)
.++..|+|++|||+|. +.+.-+++..++..+..-..+..---+++. -|+.+..+ ..-.|++||||||
T Consensus 197 lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk 276 (400)
T KOG0328|consen 197 LPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTK 276 (400)
T ss_pred CCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEeccc
Confidence 4678999999999995 666666665555444432222111112222 24444332 2346899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceE
Q 001668 79 KGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL 158 (1034)
Q Consensus 79 k~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVL 158 (1034)
+.+..+.+++.+. . +.|...||.|.+++|..+++.||.|+.+||
T Consensus 277 ~kVdwLtekm~~~----n--------------------------------ftVssmHGDm~qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328|consen 277 RKVDWLTEKMREA----N--------------------------------FTVSSMHGDMEQKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred chhhHHHHHHHhh----C--------------------------------ceeeeccCCcchhHHHHHHHHhhcCCceEE
Confidence 9998888887654 1 238889999999999999999999999999
Q ss_pred EeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHH
Q 001668 159 CTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENL 231 (1034)
Q Consensus 159 VaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~l 231 (1034)
++|++-|||+|+|.+.+||||+ .|.....|+||+||+||.| +.|.+|-++.+++...|+.+
T Consensus 321 itTDVwaRGiDv~qVslviNYD----------LP~nre~YIHRIGRSGRFG--RkGvainFVk~~d~~~lrdi 381 (400)
T KOG0328|consen 321 ITTDVWARGIDVQQVSLVINYD----------LPNNRELYIHRIGRSGRFG--RKGVAINFVKSDDLRILRDI 381 (400)
T ss_pred EEechhhccCCcceeEEEEecC----------CCccHHHHhhhhccccccC--CcceEEEEecHHHHHHHHHH
Confidence 9999999999999999999988 7888999999999999977 99999999888876665543
No 23
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=8.3e-21 Score=226.06 Aligned_cols=173 Identities=24% Similarity=0.372 Sum_probs=137.5
Q ss_pred CCCcEEEEccCccC--HHHHHHHhCCCCCcEEecccc-------ceec--chHHHHHHHHHhhcCCCcEEEEcCCHHHHH
Q 001668 14 ASVRFLAVSATIPN--IEDIAEWLNVPVQGIKRFGEE-------MRPV--KLTTKVFDILMQYSRGKSALVFCSTRKGAQ 82 (1034)
Q Consensus 14 ~~~riI~lSATlpn--~~dla~wL~~~~~~i~~f~~~-------~Rpv--~L~~~v~~~l~~~~~~~~~LVFv~sRk~~e 82 (1034)
+++|+++||||+++ ..++.++++.....++..... ..+. .....+...+.....++.+||||+|++.|+
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 57899999999996 578899998754433321111 0111 111223444444456777899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEecc
Q 001668 83 EAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTN 162 (1034)
Q Consensus 83 ~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~ 162 (1034)
.++..|... | ..++.+||+|++++|..+++.|++|.++|||||+
T Consensus 241 ~la~~L~~~----g--------------------------------~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~ 284 (470)
T TIGR00614 241 QVTASLQNL----G--------------------------------IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV 284 (470)
T ss_pred HHHHHHHhc----C--------------------------------CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 999988653 2 2388999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHhcC
Q 001668 163 TLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNG 234 (1034)
Q Consensus 163 tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll~~ 234 (1034)
+++||||+|++++||+++ .|.++.+|+||+|||||.| ..|.|+++....+...++.++..
T Consensus 285 ~~~~GID~p~V~~VI~~~----------~P~s~~~y~Qr~GRaGR~G--~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 285 AFGMGINKPDVRFVIHYS----------LPKSMESYYQESGRAGRDG--LPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred hhhccCCcccceEEEEeC----------CCCCHHHHHhhhcCcCCCC--CCceEEEEechhHHHHHHHHHhc
Confidence 999999999999999877 7889999999999999998 78999999888887777777654
No 24
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=4.3e-21 Score=214.85 Aligned_cols=192 Identities=19% Similarity=0.215 Sum_probs=155.4
Q ss_pred hhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchHHHHH--------------HHHHhhcCCCcEE
Q 001668 8 MKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF--------------DILMQYSRGKSAL 72 (1034)
Q Consensus 8 L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v~--------------~~l~~~~~~~~~L 72 (1034)
+....+.++|+++||||+.. +++++..--..|..||.-....++..|.+.+. ..+....-...+|
T Consensus 351 ii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~i 430 (691)
T KOG0338|consen 351 IIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTI 430 (691)
T ss_pred HHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceE
Confidence 33445678999999999996 99999876666777776555566666666652 1222223367899
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhc
Q 001668 73 VFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLK 152 (1034)
Q Consensus 73 VFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~ 152 (1034)
||+.|+++|.++.-.|-- ++..+|-+||+|++.+|..+++.|++
T Consensus 431 vFv~tKk~AHRl~IllGL------------------------------------lgl~agElHGsLtQ~QRlesL~kFk~ 474 (691)
T KOG0338|consen 431 VFVRTKKQAHRLRILLGL------------------------------------LGLKAGELHGSLTQEQRLESLEKFKK 474 (691)
T ss_pred EEEehHHHHHHHHHHHHH------------------------------------hhchhhhhcccccHHHHHHHHHHHHh
Confidence 999999998877655432 23337789999999999999999999
Q ss_pred CCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHh
Q 001668 153 GDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLL 232 (1034)
Q Consensus 153 G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll 232 (1034)
+.+.|||||++++||+||+.+.+||||+ +|.+...|+||+||++|+| +.|.+|.++...+....+.++
T Consensus 475 ~eidvLiaTDvAsRGLDI~gV~tVINy~----------mP~t~e~Y~HRVGRTARAG--RaGrsVtlvgE~dRkllK~ii 542 (691)
T KOG0338|consen 475 EEIDVLIATDVASRGLDIEGVQTVINYA----------MPKTIEHYLHRVGRTARAG--RAGRSVTLVGESDRKLLKEII 542 (691)
T ss_pred ccCCEEEEechhhccCCccceeEEEecc----------CchhHHHHHHHhhhhhhcc--cCcceEEEeccccHHHHHHHH
Confidence 9999999999999999999999999988 8999999999999999998 999999999999988888888
Q ss_pred cCcccccchhhhhhh
Q 001668 233 NGCEMVESQLLSCVT 247 (1034)
Q Consensus 233 ~~~~pieS~L~~~L~ 247 (1034)
+......+.+...+.
T Consensus 543 k~~~~a~~klk~R~i 557 (691)
T KOG0338|consen 543 KSSTKAGSKLKNRNI 557 (691)
T ss_pred hhhhhcccchhhcCC
Confidence 876556666665443
No 25
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=4.5e-21 Score=209.51 Aligned_cols=174 Identities=18% Similarity=0.245 Sum_probs=135.5
Q ss_pred hcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecch-HHHH-----------HHHHHhhcCCCcEEEEcC
Q 001668 10 SSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKL-TTKV-----------FDILMQYSRGKSALVFCS 76 (1034)
Q Consensus 10 ~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L-~~~v-----------~~~l~~~~~~~~~LVFv~ 76 (1034)
...+...|++++|||++. ++++..---.++..+ .....|+.++- .+++ +-.+.....+.++||||+
T Consensus 230 k~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v-~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~ 308 (476)
T KOG0330|consen 230 KVIPRERQTFLFSATMTKKVRKLQRASLDNPVKV-AVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCN 308 (476)
T ss_pred HhcCccceEEEEEeecchhhHHHHhhccCCCeEE-eccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEe
Confidence 344578999999999994 666653221112111 23334444432 2221 223444566899999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcc
Q 001668 77 TRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQ 156 (1034)
Q Consensus 77 sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ik 156 (1034)
|...+..++-.|... |. ....+||.|++..|...++.|++|...
T Consensus 309 t~~tt~~la~~L~~l----g~--------------------------------~a~~LhGqmsq~~Rlg~l~~Fk~~~r~ 352 (476)
T KOG0330|consen 309 TCNTTRFLALLLRNL----GF--------------------------------QAIPLHGQMSQSKRLGALNKFKAGARS 352 (476)
T ss_pred ccchHHHHHHHHHhc----Cc--------------------------------ceecccchhhHHHHHHHHHHHhccCCc
Confidence 999999999888764 22 256789999999999999999999999
Q ss_pred eEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHh
Q 001668 157 VLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLL 232 (1034)
Q Consensus 157 VLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll 232 (1034)
||||||+++||+|+|.+++||||+ +|.+..+|+||+||+||+| ++|.+|.++.+-+.+.|+++-
T Consensus 353 iLv~TDVaSRGLDip~Vd~VVNyD----------iP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~qrIE 416 (476)
T KOG0330|consen 353 ILVCTDVASRGLDIPHVDVVVNYD----------IPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVELVQRIE 416 (476)
T ss_pred EEEecchhcccCCCCCceEEEecC----------CCCcHHHHHHHcccccccC--CCcceEEEEehhhhHHHHHHH
Confidence 999999999999999999999988 8999999999999999999 999999888888888777653
No 26
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.85 E-value=1.2e-20 Score=233.67 Aligned_cols=172 Identities=20% Similarity=0.368 Sum_probs=136.3
Q ss_pred CCCcEEEEccCccC--HHHHHHHhCCCCCcEEecccccee------cchH----HHHHHHHHhhcCCCcEEEEcCCHHHH
Q 001668 14 ASVRFLAVSATIPN--IEDIAEWLNVPVQGIKRFGEEMRP------VKLT----TKVFDILMQYSRGKSALVFCSTRKGA 81 (1034)
Q Consensus 14 ~~~riI~lSATlpn--~~dla~wL~~~~~~i~~f~~~~Rp------v~L~----~~v~~~l~~~~~~~~~LVFv~sRk~~ 81 (1034)
+.+++++||||++. .+++...|+.....++.- .-.|| ++.. ..+...+.....+.++||||+||++|
T Consensus 615 p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~-Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~ 693 (1195)
T PLN03137 615 PNIPVLALTATATASVKEDVVQALGLVNCVVFRQ-SFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDC 693 (1195)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-ccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHH
Confidence 47899999999985 567889988654333211 11122 1211 12223333333466899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEec
Q 001668 82 QEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161 (1034)
Q Consensus 82 e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT 161 (1034)
+.+|..|... | ..+++|||||++++|..+++.|++|.++|||||
T Consensus 694 E~LAe~L~~~----G--------------------------------ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 694 EKVAERLQEF----G--------------------------------HKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred HHHHHHHHHC----C--------------------------------CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 9999988653 2 238899999999999999999999999999999
Q ss_pred cccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHhcC
Q 001668 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNG 234 (1034)
Q Consensus 162 ~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll~~ 234 (1034)
++++||||+|++++||+++ .|.++..|+||+|||||.| ..|.|+++....+...++.++..
T Consensus 738 dAFGMGIDkPDVR~VIHyd----------lPkSiEsYyQriGRAGRDG--~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHS----------LPKSIEGYHQECGRAGRDG--QRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred chhhcCCCccCCcEEEEcC----------CCCCHHHHHhhhcccCCCC--CCceEEEEecHHHHHHHHHHHhc
Confidence 9999999999999999977 8899999999999999998 78999999888777777777764
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.84 E-value=6.3e-21 Score=229.39 Aligned_cols=171 Identities=30% Similarity=0.414 Sum_probs=130.6
Q ss_pred CCCcEEEEccCccC-HHHHHHHhCCCCCcEEecccccee----------cc---hHHHHHHHHHhhc-CCCcEEEEcCCH
Q 001668 14 ASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRP----------VK---LTTKVFDILMQYS-RGKSALVFCSTR 78 (1034)
Q Consensus 14 ~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rp----------v~---L~~~v~~~l~~~~-~~~~~LVFv~sR 78 (1034)
++.|++++|||+++ .+.++.++..+...+. +....++ +. -...++..+.... ...++||||+|+
T Consensus 299 ~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~-~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~ 377 (518)
T PLN00206 299 SQPQVLLFSATVSPEVEKFASSLAKDIILIS-IGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSR 377 (518)
T ss_pred CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEE-eCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCc
Confidence 46899999999997 7888888865442221 1111111 11 1122344443322 246899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceE
Q 001668 79 KGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL 158 (1034)
Q Consensus 79 k~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVL 158 (1034)
..|+.++..|.... | ..+..+||+|++.+|..+++.|++|.++||
T Consensus 378 ~~a~~l~~~L~~~~---g--------------------------------~~~~~~Hg~~~~~eR~~il~~Fr~G~~~IL 422 (518)
T PLN00206 378 LGADLLANAITVVT---G--------------------------------LKALSIHGEKSMKERREVMKSFLVGEVPVI 422 (518)
T ss_pred hhHHHHHHHHhhcc---C--------------------------------cceEEeeCCCCHHHHHHHHHHHHCCCCCEE
Confidence 99999988775321 1 227889999999999999999999999999
Q ss_pred EeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHh
Q 001668 159 CTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLL 232 (1034)
Q Consensus 159 VaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll 232 (1034)
|||++++||||+|++++||+++ .|.++.+|+||+|||||.| ..|.++++...++...+..++
T Consensus 423 VaTdvl~rGiDip~v~~VI~~d----------~P~s~~~yihRiGRaGR~g--~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 423 VATGVLGRGVDLLRVRQVIIFD----------MPNTIKEYIHQIGRASRMG--EKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred EEecHhhccCCcccCCEEEEeC----------CCCCHHHHHHhccccccCC--CCeEEEEEEchhHHHHHHHHH
Confidence 9999999999999999999977 7889999999999999998 789999988877765555443
No 28
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.84 E-value=8.8e-21 Score=225.09 Aligned_cols=174 Identities=22% Similarity=0.276 Sum_probs=131.6
Q ss_pred hhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEeccccce---------ecch--HHHHHHHHHhhcCCCcEEEEc
Q 001668 8 MKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMR---------PVKL--TTKVFDILMQYSRGKSALVFC 75 (1034)
Q Consensus 8 L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~R---------pv~L--~~~v~~~l~~~~~~~~~LVFv 75 (1034)
+........|+++||||+++ ..+++.++..++..+........ -+.. ...++..+......+++||||
T Consensus 173 il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~ 252 (456)
T PRK10590 173 VLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFT 252 (456)
T ss_pred HHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEc
Confidence 34445567899999999997 78888877655433322111110 0111 111223333334567999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCc
Q 001668 76 STRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDV 155 (1034)
Q Consensus 76 ~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~i 155 (1034)
+++..|+.++..|... + ..+..+||+|++.+|..+++.|++|.+
T Consensus 253 ~t~~~~~~l~~~L~~~----g--------------------------------~~~~~lhg~~~~~~R~~~l~~F~~g~~ 296 (456)
T PRK10590 253 RTKHGANHLAEQLNKD----G--------------------------------IRSAAIHGNKSQGARTRALADFKSGDI 296 (456)
T ss_pred CcHHHHHHHHHHHHHC----C--------------------------------CCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 9999999999888643 2 127889999999999999999999999
Q ss_pred ceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHH
Q 001668 156 QVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYE 229 (1034)
Q Consensus 156 kVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~ 229 (1034)
+|||||+++++|||+|++.+||+++ .|.+..+|+||+|||||+| ..|.|++++...+...++
T Consensus 297 ~iLVaTdv~~rGiDip~v~~VI~~~----------~P~~~~~yvqR~GRaGR~g--~~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 297 RVLVATDIAARGLDIEELPHVVNYE----------LPNVPEDYVHRIGRTGRAA--ATGEALSLVCVDEHKLLR 358 (456)
T ss_pred cEEEEccHHhcCCCcccCCEEEEeC----------CCCCHHHhhhhccccccCC--CCeeEEEEecHHHHHHHH
Confidence 9999999999999999999999877 7889999999999999997 789999777665544443
No 29
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.84 E-value=2.1e-20 Score=232.38 Aligned_cols=281 Identities=18% Similarity=0.177 Sum_probs=186.2
Q ss_pred hhhcCCCCCcEEEEccCccCHHHHHHHhCCCCC-----cEEeccccceecchHHHH----HHHHHh--hcCCCcEEEEcC
Q 001668 8 MKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQ-----GIKRFGEEMRPVKLTTKV----FDILMQ--YSRGKSALVFCS 76 (1034)
Q Consensus 8 L~~~~~~~~riI~lSATlpn~~dla~wL~~~~~-----~i~~f~~~~Rpv~L~~~v----~~~l~~--~~~~~~~LVFv~ 76 (1034)
+......++|+|+||||+++ ..++++++..+. ..+.+...|.+++....+ ...+.. ....+++||||+
T Consensus 139 i~~~lr~dlqlIlmSATl~~-~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlp 217 (819)
T TIGR01970 139 VQSSLREDLKILAMSATLDG-ERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLP 217 (819)
T ss_pred HHHhcCCCceEEEEeCCCCH-HHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 33344678999999999985 447888864221 011111222333222221 112211 123678999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcc
Q 001668 77 TRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQ 156 (1034)
Q Consensus 77 sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ik 156 (1034)
++++++.++..|.+... . ...|..+||+|++++|..+++.|++|..+
T Consensus 218 g~~eI~~l~~~L~~~~~-~--------------------------------~~~v~pLHg~L~~~eq~~~~~~~~~G~rk 264 (819)
T TIGR01970 218 GQAEIRRVQEQLAERLD-S--------------------------------DVLICPLYGELSLAAQDRAIKPDPQGRRK 264 (819)
T ss_pred CHHHHHHHHHHHHhhcC-C--------------------------------CcEEEEecCCCCHHHHHHHHhhcccCCeE
Confidence 99999999998865311 0 12388999999999999999999999999
Q ss_pred eEEeccccccccCCCCeEEEEeccc----cccCCCCc----cccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHH
Q 001668 157 VLCTTNTLAHGINLPAHTVVIKSTQ----YFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228 (1034)
Q Consensus 157 VLVaT~tLa~GVNLPav~vVI~~t~----~y~~~~~~----~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y 228 (1034)
|||||+++++|||+|++++||+++. .|++..|. ..++|..+|.||+|||||. ..|.||-+.+..+ |
T Consensus 265 VlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~---~ 338 (819)
T TIGR01970 265 VVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ---H 338 (819)
T ss_pred EEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH---H
Confidence 9999999999999999999999863 47776653 3568899999999999997 5999997776543 3
Q ss_pred HHHhcC--cccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHH
Q 001668 229 ENLLNG--CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQ 306 (1034)
Q Consensus 229 ~~ll~~--~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~ 306 (1034)
..+... ++-..+.|...+ .. +..-.+.+..+ +.| ++..-.+.+..
T Consensus 339 ~~l~~~~~PEI~r~~L~~~~----L~-l~~~g~~~~~~-~~~---------------------------l~~P~~~~i~~ 385 (819)
T TIGR01970 339 QRLPAQDEPEILQADLSGLA----LE-LAQWGAKDPSD-LRW---------------------------LDAPPSVALAA 385 (819)
T ss_pred HhhhcCCCcceeccCcHHHH----HH-HHHcCCCChhh-CCC---------------------------CCCcCHHHHHH
Confidence 333222 222233332211 11 11111222111 011 22222344567
Q ss_pred HHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCCCChHHHHHHhhc
Q 001668 307 KVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCH 366 (1034)
Q Consensus 307 ~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~~s~~~iL~iLs~ 366 (1034)
++..|...|.| |+++ +.|.+|+.|+.+.+++.-+++++......+...++.+.|.
T Consensus 386 a~~~L~~lgal--d~~~---~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ 440 (819)
T TIGR01970 386 ARQLLQRLGAL--DAQG---RLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAAL 440 (819)
T ss_pred HHHHHHHCCCC--CCCC---CcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 88899999999 6555 5699999999999999999998875444455555555554
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.84 E-value=2.1e-20 Score=222.29 Aligned_cols=174 Identities=24% Similarity=0.344 Sum_probs=132.0
Q ss_pred hhhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEeccc--------cceecchHHHH--HHHHHhhcCCCcEEEEc
Q 001668 7 EMKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGE--------EMRPVKLTTKV--FDILMQYSRGKSALVFC 75 (1034)
Q Consensus 7 ~L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~--------~~Rpv~L~~~v--~~~l~~~~~~~~~LVFv 75 (1034)
++....+...|+++||||+|+ ...++..+...+..+..... .+-.++...+. ...+.....++++||||
T Consensus 170 ~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~ 249 (460)
T PRK11776 170 AIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFC 249 (460)
T ss_pred HHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEE
Confidence 444555678899999999996 67777765444332221111 11112222211 22223344567899999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCc
Q 001668 76 STRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDV 155 (1034)
Q Consensus 76 ~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~i 155 (1034)
+|++.|+.++..|... + ..+.++||+|++.+|..+++.|++|.+
T Consensus 250 ~t~~~~~~l~~~L~~~----~--------------------------------~~v~~~hg~~~~~eR~~~l~~F~~g~~ 293 (460)
T PRK11776 250 NTKKECQEVADALNAQ----G--------------------------------FSALALHGDLEQRDRDQVLVRFANRSC 293 (460)
T ss_pred CCHHHHHHHHHHHHhC----C--------------------------------CcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 9999999999988653 1 238899999999999999999999999
Q ss_pred ceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHH
Q 001668 156 QVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228 (1034)
Q Consensus 156 kVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y 228 (1034)
+|||||+++++|||+|++.+||+++ .|.+..+|+||+|||||.| ..|.|+.+....+...+
T Consensus 294 ~vLVaTdv~~rGiDi~~v~~VI~~d----------~p~~~~~yiqR~GRtGR~g--~~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 294 SVLVATDVAARGLDIKALEAVINYE----------LARDPEVHVHRIGRTGRAG--SKGLALSLVAPEEMQRA 354 (460)
T ss_pred cEEEEecccccccchhcCCeEEEec----------CCCCHhHhhhhcccccCCC--CcceEEEEEchhHHHHH
Confidence 9999999999999999999999977 7889999999999999997 78999988877654443
No 31
>PTZ00424 helicase 45; Provisional
Probab=99.83 E-value=1.5e-20 Score=219.53 Aligned_cols=173 Identities=24% Similarity=0.369 Sum_probs=128.1
Q ss_pred hcCCCCCcEEEEccCccC-HHHHHH-HhCCCCCcEEeccc---------cceecchHHHHHH---HHHhhcCCCcEEEEc
Q 001668 10 SSSLASVRFLAVSATIPN-IEDIAE-WLNVPVQGIKRFGE---------EMRPVKLTTKVFD---ILMQYSRGKSALVFC 75 (1034)
Q Consensus 10 ~~~~~~~riI~lSATlpn-~~dla~-wL~~~~~~i~~f~~---------~~Rpv~L~~~v~~---~l~~~~~~~~~LVFv 75 (1034)
.....++|+|++|||+|+ ..++.. ++..+ ..+..... .+..++....... .+.......++||||
T Consensus 196 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~ 274 (401)
T PTZ00424 196 KKLPPDVQVALFSATMPNEILELTTKFMRDP-KRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYC 274 (401)
T ss_pred hhCCCCcEEEEEEecCCHHHHHHHHHHcCCC-EEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 344568999999999997 444443 44322 11111100 0111111111112 222233467899999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCc
Q 001668 76 STRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDV 155 (1034)
Q Consensus 76 ~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~i 155 (1034)
+|++.++.++..|... ..++++|||+|++++|..+++.|++|.+
T Consensus 275 ~t~~~~~~l~~~l~~~------------------------------------~~~~~~~h~~~~~~~R~~i~~~f~~g~~ 318 (401)
T PTZ00424 275 NTRRKVDYLTKKMHER------------------------------------DFTVSCMHGDMDQKDRDLIMREFRSGST 318 (401)
T ss_pred cCcHHHHHHHHHHHHC------------------------------------CCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 9999999998877542 1248999999999999999999999999
Q ss_pred ceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHH
Q 001668 156 QVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENL 231 (1034)
Q Consensus 156 kVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~l 231 (1034)
+|||||+++++|||+|++.+||+++ .|.+..+|+||+|||||.| ..|.|++++..++..++.++
T Consensus 319 ~vLvaT~~l~~GiDip~v~~VI~~~----------~p~s~~~y~qr~GRagR~g--~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 319 RVLITTDLLARGIDVQQVSLVINYD----------LPASPENYIHRIGRSGRFG--RKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred CEEEEcccccCCcCcccCCEEEEEC----------CCCCHHHEeecccccccCC--CCceEEEEEcHHHHHHHHHH
Confidence 9999999999999999999999876 6889999999999999987 78999999988776666554
No 32
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.1e-20 Score=223.81 Aligned_cols=173 Identities=23% Similarity=0.325 Sum_probs=131.1
Q ss_pred hcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEec-----------cccceecchHH---HHHHHHHhhcCCCcEEEE
Q 001668 10 SSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRF-----------GEEMRPVKLTT---KVFDILMQYSRGKSALVF 74 (1034)
Q Consensus 10 ~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f-----------~~~~Rpv~L~~---~v~~~l~~~~~~~~~LVF 74 (1034)
...+.+.|+++||||+|+ +.+++.-+-.++..+... ...+-.++-.. ..+..+.......++|||
T Consensus 200 ~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF 279 (513)
T COG0513 200 KALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVF 279 (513)
T ss_pred HhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 344458999999999997 666665443344333222 11122232211 122333344445679999
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCC
Q 001668 75 CSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGD 154 (1034)
Q Consensus 75 v~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ 154 (1034)
|+|++.|+.++..|... |+ .++.+||+|++++|..+++.|++|.
T Consensus 280 ~~tk~~~~~l~~~l~~~----g~--------------------------------~~~~lhG~l~q~~R~~~l~~F~~g~ 323 (513)
T COG0513 280 VRTKRLVEELAESLRKR----GF--------------------------------KVAALHGDLPQEERDRALEKFKDGE 323 (513)
T ss_pred eCcHHHHHHHHHHHHHC----CC--------------------------------eEEEecCCCCHHHHHHHHHHHHcCC
Confidence 99999999999888654 22 2889999999999999999999999
Q ss_pred cceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccc-cHHHHHH
Q 001668 155 VQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE-TVHLYEN 230 (1034)
Q Consensus 155 ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~-~~~~y~~ 230 (1034)
++|||||+++|||||+|.+.+||||+ .|.+..+|+||+||+||+| ..|.++.++... +...+.+
T Consensus 324 ~~vLVaTDvaaRGiDi~~v~~VinyD----------~p~~~e~yvHRiGRTgRaG--~~G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 324 LRVLVATDVAARGLDIPDVSHVINYD----------LPLDPEDYVHRIGRTGRAG--RKGVAISFVTEEEEVKKLKR 388 (513)
T ss_pred CCEEEEechhhccCCccccceeEEcc----------CCCCHHHheeccCccccCC--CCCeEEEEeCcHHHHHHHHH
Confidence 99999999999999999999999988 7899999999999999998 899999888754 4444443
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.83 E-value=7.9e-20 Score=223.62 Aligned_cols=172 Identities=23% Similarity=0.350 Sum_probs=136.4
Q ss_pred CCCcEEEEccCccC--HHHHHHHhCCCCCcEEeccccceec---------chHHHHHHHHHhhcCCCcEEEEcCCHHHHH
Q 001668 14 ASVRFLAVSATIPN--IEDIAEWLNVPVQGIKRFGEEMRPV---------KLTTKVFDILMQYSRGKSALVFCSTRKGAQ 82 (1034)
Q Consensus 14 ~~~riI~lSATlpn--~~dla~wL~~~~~~i~~f~~~~Rpv---------~L~~~v~~~l~~~~~~~~~LVFv~sRk~~e 82 (1034)
+++++++||||+++ ..++..+++.....++. ..-.||. .....+...+. ...++++||||+||+.|+
T Consensus 173 p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~r~nl~~~v~~~~~~~~~l~~~l~-~~~~~~~IIFc~tr~~~e 250 (607)
T PRK11057 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRPNIRYTLVEKFKPLDQLMRYVQ-EQRGKSGIIYCNSRAKVE 250 (607)
T ss_pred CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCCCCcceeeeeeccchHHHHHHHHH-hcCCCCEEEEECcHHHHH
Confidence 57899999999996 45788888765433321 1111221 00112223332 345789999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEecc
Q 001668 83 EAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTN 162 (1034)
Q Consensus 83 ~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~ 162 (1034)
.++..|... | ..+++|||||++++|..+++.|++|.++|||||+
T Consensus 251 ~la~~L~~~----g--------------------------------~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~ 294 (607)
T PRK11057 251 DTAARLQSR----G--------------------------------ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV 294 (607)
T ss_pred HHHHHHHhC----C--------------------------------CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec
Confidence 999988653 2 1388999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHhcCc
Q 001668 163 TLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGC 235 (1034)
Q Consensus 163 tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll~~~ 235 (1034)
+++||||+|++++||+++ .|.+..+|+||+|||||.| ..|.|+++....+...+++++...
T Consensus 295 a~~~GIDip~V~~VI~~d----------~P~s~~~y~Qr~GRaGR~G--~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 295 AFGMGINKPNVRFVVHFD----------IPRNIESYYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred hhhccCCCCCcCEEEEeC----------CCCCHHHHHHHhhhccCCC--CCceEEEEeCHHHHHHHHHHHhcC
Confidence 999999999999999877 7889999999999999998 789999999888888888887653
No 34
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2.3e-20 Score=198.80 Aligned_cols=169 Identities=24% Similarity=0.345 Sum_probs=129.2
Q ss_pred hhhhcCCCCCcEEEEccCccC-HHHH-HHHhCCCCCcEEeccccceecch---------HHHH--HHHHHhhcCCCcEEE
Q 001668 7 EMKSSSLASVRFLAVSATIPN-IEDI-AEWLNVPVQGIKRFGEEMRPVKL---------TTKV--FDILMQYSRGKSALV 73 (1034)
Q Consensus 7 ~L~~~~~~~~riI~lSATlpn-~~dl-a~wL~~~~~~i~~f~~~~Rpv~L---------~~~v--~~~l~~~~~~~~~LV 73 (1034)
+|....++..|++++|||.|. +..+ -++|..|. ..+.-.+..+.-+ .+++ +..+.....-.++||
T Consensus 250 ~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy--~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsII 327 (459)
T KOG0326|consen 250 KLISFLPKERQILLYSATFPLTVKGFMDRHLKKPY--EINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSII 327 (459)
T ss_pred HHHHhCCccceeeEEecccchhHHHHHHHhccCcc--eeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEE
Confidence 455566789999999999996 4444 45555443 1222222222222 2222 233333345678999
Q ss_pred EcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcC
Q 001668 74 FCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG 153 (1034)
Q Consensus 74 Fv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G 153 (1034)
||||-+.++.+|+++.+. |++ +.|.|+.|.++.|..|+..|++|
T Consensus 328 FCNS~~rVELLAkKITel----Gys--------------------------------cyyiHakM~Q~hRNrVFHdFr~G 371 (459)
T KOG0326|consen 328 FCNSTNRVELLAKKITEL----GYS--------------------------------CYYIHAKMAQEHRNRVFHDFRNG 371 (459)
T ss_pred EeccchHhHHHHHHHHhc----cch--------------------------------hhHHHHHHHHhhhhhhhhhhhcc
Confidence 999999999999998765 333 67899999999999999999999
Q ss_pred CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccH
Q 001668 154 DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV 225 (1034)
Q Consensus 154 ~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~ 225 (1034)
..+.||||+.+.||||++|+.|||+++ .|.+.++|+||+||+||.| .-|.||-+..-++.
T Consensus 372 ~crnLVctDL~TRGIDiqavNvVINFD----------fpk~aEtYLHRIGRsGRFG--hlGlAInLityedr 431 (459)
T KOG0326|consen 372 KCRNLVCTDLFTRGIDIQAVNVVINFD----------FPKNAETYLHRIGRSGRFG--HLGLAINLITYEDR 431 (459)
T ss_pred ccceeeehhhhhcccccceeeEEEecC----------CCCCHHHHHHHccCCccCC--CcceEEEEEehhhh
Confidence 999999999999999999999999988 7889999999999999977 89999955544443
No 35
>PTZ00110 helicase; Provisional
Probab=99.83 E-value=7.2e-20 Score=221.15 Aligned_cols=176 Identities=20% Similarity=0.264 Sum_probs=131.5
Q ss_pred hhhhhcCCCCCcEEEEccCccC-HHHHHHHhCCC-CCcEEe--cc----c----cceecchH---HHHHHHHHhhc-CCC
Q 001668 6 PEMKSSSLASVRFLAVSATIPN-IEDIAEWLNVP-VQGIKR--FG----E----EMRPVKLT---TKVFDILMQYS-RGK 69 (1034)
Q Consensus 6 ~~L~~~~~~~~riI~lSATlpn-~~dla~wL~~~-~~~i~~--f~----~----~~Rpv~L~---~~v~~~l~~~~-~~~ 69 (1034)
.++.....+..|+|++|||+|. .+.+++++... +..+.. .. . .+.-+.-. ..+...+.... .++
T Consensus 299 ~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~ 378 (545)
T PTZ00110 299 RKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGD 378 (545)
T ss_pred HHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCC
Confidence 3444555678999999999996 77888776432 211110 00 0 00001111 11223333333 678
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHH
Q 001668 70 SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGL 149 (1034)
Q Consensus 70 ~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~ 149 (1034)
++||||+|++.|+.++..|... |. .+..+||++++++|..+++.
T Consensus 379 k~LIF~~t~~~a~~l~~~L~~~----g~--------------------------------~~~~ihg~~~~~eR~~il~~ 422 (545)
T PTZ00110 379 KILIFVETKKGADFLTKELRLD----GW--------------------------------PALCIHGDKKQEERTWVLNE 422 (545)
T ss_pred eEEEEecChHHHHHHHHHHHHc----CC--------------------------------cEEEEECCCcHHHHHHHHHH
Confidence 9999999999999999988643 22 26789999999999999999
Q ss_pred hhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHH
Q 001668 150 FLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYE 229 (1034)
Q Consensus 150 F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~ 229 (1034)
|++|.++|||||+++++|||+|++.+||+++ .|.++.+|+||+|||||.| ..|.|+++....+.....
T Consensus 423 F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d----------~P~s~~~yvqRiGRtGR~G--~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 423 FKTGKSPIMIATDVASRGLDVKDVKYVINFD----------FPNQIEDYVHRIGRTGRAG--AKGASYTFLTPDKYRLAR 490 (545)
T ss_pred HhcCCCcEEEEcchhhcCCCcccCCEEEEeC----------CCCCHHHHHHHhcccccCC--CCceEEEEECcchHHHHH
Confidence 9999999999999999999999999999977 7889999999999999998 789999887776654433
No 36
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.83 E-value=7e-20 Score=231.85 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=190.4
Q ss_pred CCCcEEEEccCccCHHHHHHHhCCCCCcEE------eccccceecchH------HH---HHHHHHh--hcCCCcEEEEcC
Q 001668 14 ASVRFLAVSATIPNIEDIAEWLNVPVQGIK------RFGEEMRPVKLT------TK---VFDILMQ--YSRGKSALVFCS 76 (1034)
Q Consensus 14 ~~~riI~lSATlpn~~dla~wL~~~~~~i~------~f~~~~Rpv~L~------~~---v~~~l~~--~~~~~~~LVFv~ 76 (1034)
+++|+|+||||++ .+.++++++..+. +. .+...|.|+.-. .. ++..+.. ....+.+||||+
T Consensus 217 pdlKvILmSATid-~e~fs~~F~~apv-I~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 217 PDLKVIITSATID-PERFSRHFNNAPI-IEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred CCceEEEeeCCCC-HHHHHHHcCCCCE-EEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 4689999999995 7789998864331 11 111223333210 11 1222211 234678999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcc
Q 001668 77 TRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQ 156 (1034)
Q Consensus 77 sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ik 156 (1034)
++.+++.++..|... +.. ...|..+||+|++++|..+++. .|..+
T Consensus 295 g~~EIe~lae~L~~~----~~~-----------------------------~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rk 339 (1294)
T PRK11131 295 GEREIRDTADALNKL----NLR-----------------------------HTEILPLYARLSNSEQNRVFQS--HSGRR 339 (1294)
T ss_pred CHHHHHHHHHHHHhc----CCC-----------------------------cceEeecccCCCHHHHHHHhcc--cCCee
Confidence 999999999988653 110 1127789999999999999886 57899
Q ss_pred eEEeccccccccCCCCeEEEEecc----ccccCCCCc----cccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHH
Q 001668 157 VLCTTNTLAHGINLPAHTVVIKST----QYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228 (1034)
Q Consensus 157 VLVaT~tLa~GVNLPav~vVI~~t----~~y~~~~~~----~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y 228 (1034)
|||||+++++||++|++.+||+++ .+|++..+. ..++|..+|.||+|||||.+ .|.||-+.+.++ |
T Consensus 340 IIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d---~ 413 (1294)
T PRK11131 340 IVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDD---F 413 (1294)
T ss_pred EEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHH---H
Confidence 999999999999999999999975 467776553 24577899999999999984 899997776543 3
Q ss_pred HHHhcC--cccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHH
Q 001668 229 ENLLNG--CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQ 306 (1034)
Q Consensus 229 ~~ll~~--~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~ 306 (1034)
..+-.. ++...+.|.+.+ ..-...| +.++. +| +.++..-.+.+..
T Consensus 414 ~~~~~~~~PEIlR~~L~~vi----L~lk~lg-l~di~---~F-------------------------~fldpP~~~~i~~ 460 (1294)
T PRK11131 414 LSRPEFTDPEILRTNLASVI----LQMTALG-LGDIA---AF-------------------------PFVEAPDKRNIQD 460 (1294)
T ss_pred HhhhcccCCccccCCHHHHH----HHHHHcC-CCCcc---ee-------------------------eCCCCCCHHHHHH
Confidence 333221 222233332211 1111111 12211 11 1122223345567
Q ss_pred HHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCCCChHHHHHHhhccccccccccChhHHH
Q 001668 307 KVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKK 381 (1034)
Q Consensus 307 ~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek~ 381 (1034)
++..|...|.|..++.+....+|.+|+.||.++++|..+++++......+..+++-+.|.-. ..+...|+.++.
T Consensus 461 al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Ls-v~dpf~~p~~~~ 534 (1294)
T PRK11131 461 GVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALS-IQDPRERPMDKQ 534 (1294)
T ss_pred HHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHc-CCCcccCCchhH
Confidence 88899999999433222234689999999999999999999988666667888877666522 234555555544
No 37
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.3e-19 Score=197.05 Aligned_cols=173 Identities=23% Similarity=0.266 Sum_probs=130.2
Q ss_pred hcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEE---------eccccceecchHHHHHHHHHhh---cCCCcEEEEcC
Q 001668 10 SSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIK---------RFGEEMRPVKLTTKVFDILMQY---SRGKSALVFCS 76 (1034)
Q Consensus 10 ~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~---------~f~~~~Rpv~L~~~v~~~l~~~---~~~~~~LVFv~ 76 (1034)
...+...|+|+||||... ...+|.-+-.++..++ .+..-+--|+-+..-|..+..+ ..-++.||||+
T Consensus 259 ~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~ 338 (477)
T KOG0332|consen 259 RSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCH 338 (477)
T ss_pred hhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEe
Confidence 344568999999999975 5556554432222222 2222233344444446655433 34589999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcc
Q 001668 77 TRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQ 156 (1034)
Q Consensus 77 sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ik 156 (1034)
||+.|..++..+... |+ .|..+||.|.-++|..+.+.||.|.-+
T Consensus 339 tk~ta~~l~~~m~~~----Gh--------------------------------~V~~l~G~l~~~~R~~ii~~Fr~g~~k 382 (477)
T KOG0332|consen 339 TKATAMWLYEEMRAE----GH--------------------------------QVSLLHGDLTVEQRAAIIDRFREGKEK 382 (477)
T ss_pred ehhhHHHHHHHHHhc----Cc--------------------------------eeEEeeccchhHHHHHHHHHHhcCcce
Confidence 999999998888764 33 399999999999999999999999999
Q ss_pred eEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 157 VLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 157 VLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
|||+|+++|||+|++.+.+||||+..-.... .-+...|+||+||+||.| +.|.+|-+.+...
T Consensus 383 VLitTnV~ARGiDv~qVs~VvNydlP~~~~~----~pD~etYlHRiGRtGRFG--kkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 383 VLITTNVCARGIDVAQVSVVVNYDLPVKYTG----EPDYETYLHRIGRTGRFG--KKGLAINLVDDKD 444 (477)
T ss_pred EEEEechhhcccccceEEEEEecCCccccCC----CCCHHHHHHHhccccccc--ccceEEEeecccC
Confidence 9999999999999999999999875433221 247899999999999977 9999997776543
No 38
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.82 E-value=9.8e-20 Score=215.04 Aligned_cols=172 Identities=24% Similarity=0.281 Sum_probs=130.6
Q ss_pred hhcCCCCCcEEEEccCccC--HHHHHHHhCCCCCcEEecccc---------ceecchHH---HHHHHHHhhcCCCcEEEE
Q 001668 9 KSSSLASVRFLAVSATIPN--IEDIAEWLNVPVQGIKRFGEE---------MRPVKLTT---KVFDILMQYSRGKSALVF 74 (1034)
Q Consensus 9 ~~~~~~~~riI~lSATlpn--~~dla~wL~~~~~~i~~f~~~---------~Rpv~L~~---~v~~~l~~~~~~~~~LVF 74 (1034)
........|+++||||++. ..+++.++..++..+...... +..+.-.. .++..+.......++|||
T Consensus 172 ~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF 251 (434)
T PRK11192 172 AAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVF 251 (434)
T ss_pred HHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 3344567899999999974 788999887654333211100 11111111 122223333356889999
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCC
Q 001668 75 CSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGD 154 (1034)
Q Consensus 75 v~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ 154 (1034)
|+++..|+.++..|... + ..++++||+|++.+|..+++.|++|.
T Consensus 252 ~~s~~~~~~l~~~L~~~----~--------------------------------~~~~~l~g~~~~~~R~~~l~~f~~G~ 295 (434)
T PRK11192 252 VRTRERVHELAGWLRKA----G--------------------------------INCCYLEGEMVQAKRNEAIKRLTDGR 295 (434)
T ss_pred eCChHHHHHHHHHHHhC----C--------------------------------CCEEEecCCCCHHHHHHHHHHHhCCC
Confidence 99999999999988653 1 12889999999999999999999999
Q ss_pred cceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHH
Q 001668 155 VQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228 (1034)
Q Consensus 155 ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y 228 (1034)
++|||||+++++|||+|++.+||+++ .|.+...|+||+|||||.| ..|.|+++....+...+
T Consensus 296 ~~vLVaTd~~~~GiDip~v~~VI~~d----------~p~s~~~yiqr~GR~gR~g--~~g~ai~l~~~~d~~~~ 357 (434)
T PRK11192 296 VNVLVATDVAARGIDIDDVSHVINFD----------MPRSADTYLHRIGRTGRAG--RKGTAISLVEAHDHLLL 357 (434)
T ss_pred CcEEEEccccccCccCCCCCEEEEEC----------CCCCHHHHhhcccccccCC--CCceEEEEecHHHHHHH
Confidence 99999999999999999999999876 7889999999999999987 78999988866554433
No 39
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.82 E-value=3.8e-20 Score=224.44 Aligned_cols=162 Identities=24% Similarity=0.361 Sum_probs=122.6
Q ss_pred CCcEEEEccCccC-HHHHH-HHhCCCCCcEEecccccee---------cchHHH--HHHHHHhhcCCCcEEEEcCCHHHH
Q 001668 15 SVRFLAVSATIPN-IEDIA-EWLNVPVQGIKRFGEEMRP---------VKLTTK--VFDILMQYSRGKSALVFCSTRKGA 81 (1034)
Q Consensus 15 ~~riI~lSATlpn-~~dla-~wL~~~~~~i~~f~~~~Rp---------v~L~~~--v~~~l~~~~~~~~~LVFv~sRk~~ 81 (1034)
..|+++||||+++ +..++ .++..+ ..+..-...... .....+ .+..+.....+.++||||+|++.|
T Consensus 192 ~~q~ll~SATl~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~a 270 (572)
T PRK04537 192 TRQTLLFSATLSHRVLELAYEHMNEP-EKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFV 270 (572)
T ss_pred CceEEEEeCCccHHHHHHHHHHhcCC-cEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHH
Confidence 6899999999996 45544 455432 222111111100 011111 122223345678999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEec
Q 001668 82 QEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161 (1034)
Q Consensus 82 e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT 161 (1034)
+.++..|... + ..+++|||+|++.+|..+++.|++|.++|||||
T Consensus 271 e~l~~~L~~~----g--------------------------------~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT 314 (572)
T PRK04537 271 ERVARTLERH----G--------------------------------YRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314 (572)
T ss_pred HHHHHHHHHc----C--------------------------------CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 9999988653 2 238999999999999999999999999999999
Q ss_pred cccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccH
Q 001668 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV 225 (1034)
Q Consensus 162 ~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~ 225 (1034)
+++++|||+|++++||+++ .|.+..+|+||+|||||.| ..|.||+++...+.
T Consensus 315 dv~arGIDip~V~~VInyd----------~P~s~~~yvqRiGRaGR~G--~~G~ai~~~~~~~~ 366 (572)
T PRK04537 315 DVAARGLHIDGVKYVYNYD----------LPFDAEDYVHRIGRTARLG--EEGDAISFACERYA 366 (572)
T ss_pred hhhhcCCCccCCCEEEEcC----------CCCCHHHHhhhhcccccCC--CCceEEEEecHHHH
Confidence 9999999999999999977 7889999999999999998 78999988766543
No 40
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.81 E-value=1e-19 Score=217.25 Aligned_cols=164 Identities=20% Similarity=0.268 Sum_probs=123.2
Q ss_pred CCcEEEEccCccC-HHHHHHHhCCCCCcEEeccc---------cceecchHHH--HHHHHHhhcCCCcEEEEcCCHHHHH
Q 001668 15 SVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGE---------EMRPVKLTTK--VFDILMQYSRGKSALVFCSTRKGAQ 82 (1034)
Q Consensus 15 ~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~---------~~Rpv~L~~~--v~~~l~~~~~~~~~LVFv~sRk~~e 82 (1034)
..|+|++|||+++ ..++++++...+..+..... .+..+..... .+..+.......++||||++++.|+
T Consensus 270 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~ 349 (475)
T PRK01297 270 ERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVR 349 (475)
T ss_pred CceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHH
Confidence 5799999999985 66776655433322111110 1111111111 1222223344578999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEecc
Q 001668 83 EAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTN 162 (1034)
Q Consensus 83 ~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~ 162 (1034)
.++..|... | ..+..+||++++.+|..+++.|++|.++|||||+
T Consensus 350 ~l~~~L~~~----~--------------------------------~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~ 393 (475)
T PRK01297 350 RIEERLVKD----G--------------------------------INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 393 (475)
T ss_pred HHHHHHHHc----C--------------------------------CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 999888543 2 1278899999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHH
Q 001668 163 TLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVH 226 (1034)
Q Consensus 163 tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~ 226 (1034)
++++|||+|++++||+++ .|.++.+|+||+|||||.| ..|.++++...++..
T Consensus 394 ~l~~GIDi~~v~~VI~~~----------~P~s~~~y~Qr~GRaGR~g--~~g~~i~~~~~~d~~ 445 (475)
T PRK01297 394 VAGRGIHIDGISHVINFT----------LPEDPDDYVHRIGRTGRAG--ASGVSISFAGEDDAF 445 (475)
T ss_pred ccccCCcccCCCEEEEeC----------CCCCHHHHHHhhCccCCCC--CCceEEEEecHHHHH
Confidence 999999999999999977 7889999999999999998 789999888766533
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.81 E-value=1.9e-19 Score=220.39 Aligned_cols=173 Identities=28% Similarity=0.339 Sum_probs=137.8
Q ss_pred CCcEEEEccCccC--HHHHHHHhCCCCCcEEeccccceec---------chHHHHHHHHHhhcCCCcEEEEcCCHHHHHH
Q 001668 15 SVRFLAVSATIPN--IEDIAEWLNVPVQGIKRFGEEMRPV---------KLTTKVFDILMQYSRGKSALVFCSTRKGAQE 83 (1034)
Q Consensus 15 ~~riI~lSATlpn--~~dla~wL~~~~~~i~~f~~~~Rpv---------~L~~~v~~~l~~~~~~~~~LVFv~sRk~~e~ 83 (1034)
+.++|+||||.+. ..++..||+.+...++.. ...||. .....+...+... .++++||||+||+.|+.
T Consensus 162 ~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~l~~~l~~~-~~~~~IIf~~sr~~~e~ 239 (591)
T TIGR01389 162 QVPRIALTATADAETRQDIRELLRLADANEFIT-SFDRPNLRFSVVKKNNKQKFLLDYLKKH-RGQSGIIYASSRKKVEE 239 (591)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec-CCCCCCcEEEEEeCCCHHHHHHHHHHhc-CCCCEEEEECcHHHHHH
Confidence 4569999999985 578999998765444321 111221 1112234444332 37899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEeccc
Q 001668 84 AAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNT 163 (1034)
Q Consensus 84 lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~t 163 (1034)
++..|... | ..+++|||||++++|..+++.|++|.++|||||++
T Consensus 240 la~~L~~~----g--------------------------------~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a 283 (591)
T TIGR01389 240 LAERLESQ----G--------------------------------ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNA 283 (591)
T ss_pred HHHHHHhC----C--------------------------------CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEech
Confidence 99988643 2 22789999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHhcCccc
Q 001668 164 LAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEM 237 (1034)
Q Consensus 164 La~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll~~~~p 237 (1034)
++||||+|++++||+++ .|.+...|+||+|||||.| ..|.|++++...+...++.++....+
T Consensus 284 ~~~GID~p~v~~VI~~~----------~p~s~~~y~Q~~GRaGR~G--~~~~~il~~~~~d~~~~~~~i~~~~~ 345 (591)
T TIGR01389 284 FGMGIDKPNVRFVIHYD----------MPGNLESYYQEAGRAGRDG--LPAEAILLYSPADIALLKRRIEQSEA 345 (591)
T ss_pred hhccCcCCCCCEEEEcC----------CCCCHHHHhhhhccccCCC--CCceEEEecCHHHHHHHHHHHhccCC
Confidence 99999999999999876 6889999999999999988 78999999988888888888876444
No 42
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.81 E-value=2.2e-19 Score=219.20 Aligned_cols=175 Identities=19% Similarity=0.286 Sum_probs=131.3
Q ss_pred hhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEecccc---------ceecchHHH--HHHHHHhhcCCCcEEEEc
Q 001668 8 MKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEE---------MRPVKLTTK--VFDILMQYSRGKSALVFC 75 (1034)
Q Consensus 8 L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~---------~Rpv~L~~~--v~~~l~~~~~~~~~LVFv 75 (1034)
+....+...|+++||||+|+ ...+++.+...+..+...... +..+.-..+ .+..+.......++||||
T Consensus 173 Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~ 252 (629)
T PRK11634 173 IMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFV 252 (629)
T ss_pred HHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEe
Confidence 33445678999999999997 667766554433333211111 111111111 112222334567899999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCc
Q 001668 76 STRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDV 155 (1034)
Q Consensus 76 ~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~i 155 (1034)
+|++.|..++..|... | +.+..+||+|++.+|..+++.|++|.+
T Consensus 253 ~tk~~a~~l~~~L~~~----g--------------------------------~~~~~lhgd~~q~~R~~il~~Fr~G~~ 296 (629)
T PRK11634 253 RTKNATLEVAEALERN----G--------------------------------YNSAALNGDMNQALREQTLERLKDGRL 296 (629)
T ss_pred ccHHHHHHHHHHHHhC----C--------------------------------CCEEEeeCCCCHHHHHHHHHHHhCCCC
Confidence 9999999999988653 2 237889999999999999999999999
Q ss_pred ceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHH
Q 001668 156 QVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYEN 230 (1034)
Q Consensus 156 kVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ 230 (1034)
+|||||+++++|||+|.+.+||+++ .|.+..+|+||+|||||+| +.|.|++++...+...+..
T Consensus 297 ~ILVATdv~arGIDip~V~~VI~~d----------~P~~~e~yvqRiGRtGRaG--r~G~ai~~v~~~e~~~l~~ 359 (629)
T PRK11634 297 DILIATDVAARGLDVERISLVVNYD----------IPMDSESYVHRIGRTGRAG--RAGRALLFVENRERRLLRN 359 (629)
T ss_pred CEEEEcchHhcCCCcccCCEEEEeC----------CCCCHHHHHHHhccccCCC--CcceEEEEechHHHHHHHH
Confidence 9999999999999999999999977 7889999999999999998 8899999987766544443
No 43
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.81 E-value=6.9e-20 Score=215.58 Aligned_cols=166 Identities=25% Similarity=0.344 Sum_probs=123.0
Q ss_pred CCcEEEEccCccC-HHHHH-HHhCCCCCcEEeccccc---------eecchHHH--HHHHHHhhcCCCcEEEEcCCHHHH
Q 001668 15 SVRFLAVSATIPN-IEDIA-EWLNVPVQGIKRFGEEM---------RPVKLTTK--VFDILMQYSRGKSALVFCSTRKGA 81 (1034)
Q Consensus 15 ~~riI~lSATlpn-~~dla-~wL~~~~~~i~~f~~~~---------Rpv~L~~~--v~~~l~~~~~~~~~LVFv~sRk~~ 81 (1034)
..|.+++|||++. ...++ .++..+ ..+....... .......+ .+..+.......++||||++++.|
T Consensus 190 ~~~~~l~SAT~~~~~~~~~~~~~~~p-~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~ 268 (423)
T PRK04837 190 QRLNMLFSATLSYRVRELAFEHMNNP-EYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRC 268 (423)
T ss_pred ceeEEEEeccCCHHHHHHHHHHCCCC-EEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 5678999999996 55555 344432 2221111000 00011111 122222234467899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEec
Q 001668 82 QEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161 (1034)
Q Consensus 82 e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT 161 (1034)
+.++..|... | ..++++||+|++++|..+++.|++|.++|||||
T Consensus 269 ~~l~~~L~~~----g--------------------------------~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT 312 (423)
T PRK04837 269 EEIWGHLAAD----G--------------------------------HRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT 312 (423)
T ss_pred HHHHHHHHhC----C--------------------------------CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe
Confidence 9999888643 2 238999999999999999999999999999999
Q ss_pred cccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHH
Q 001668 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYE 229 (1034)
Q Consensus 162 ~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~ 229 (1034)
++++||||+|++++||+++ .|.+..+|+||+|||||.| ..|.||.+..+.+...+.
T Consensus 313 dv~~rGiDip~v~~VI~~d----------~P~s~~~yiqR~GR~gR~G--~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 313 DVAARGLHIPAVTHVFNYD----------LPDDCEDYVHRIGRTGRAG--ASGHSISLACEEYALNLP 368 (423)
T ss_pred chhhcCCCccccCEEEEeC----------CCCchhheEeccccccCCC--CCeeEEEEeCHHHHHHHH
Confidence 9999999999999999977 7889999999999999998 889999887776544443
No 44
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.81 E-value=1.1e-19 Score=226.56 Aligned_cols=263 Identities=19% Similarity=0.222 Sum_probs=176.9
Q ss_pred hhcCCCCCcEEEEccCccCHHHHHHHhCCCCCcEE------eccccceecchHHHH----HHHHHh--hcCCCcEEEEcC
Q 001668 9 KSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIK------RFGEEMRPVKLTTKV----FDILMQ--YSRGKSALVFCS 76 (1034)
Q Consensus 9 ~~~~~~~~riI~lSATlpn~~dla~wL~~~~~~i~------~f~~~~Rpv~L~~~v----~~~l~~--~~~~~~~LVFv~ 76 (1034)
....+.++|+|+||||+++ ..++++++..+ .+. .+...|.+++-..++ ...+.. ....+++||||+
T Consensus 143 ~~~lr~~lqlilmSATl~~-~~l~~~~~~~~-~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlp 220 (812)
T PRK11664 143 QQGLRDDLKLLIMSATLDN-DRLQQLLPDAP-VIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLP 220 (812)
T ss_pred HHhCCccceEEEEecCCCH-HHHHHhcCCCC-EEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 3344578999999999975 46788886322 111 111112222222221 112211 123689999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcc
Q 001668 77 TRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQ 156 (1034)
Q Consensus 77 sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ik 156 (1034)
++++++.++..|...... ...|..+||+|++++|..+++.|++|..+
T Consensus 221 g~~ei~~l~~~L~~~~~~---------------------------------~~~v~~Lhg~l~~~eq~~~~~~~~~G~rk 267 (812)
T PRK11664 221 GVGEIQRVQEQLASRVAS---------------------------------DVLLCPLYGALSLAEQQKAILPAPAGRRK 267 (812)
T ss_pred CHHHHHHHHHHHHHhccC---------------------------------CceEEEeeCCCCHHHHHHHhccccCCCeE
Confidence 999999999998753100 11288899999999999999999999999
Q ss_pred eEEeccccccccCCCCeEEEEeccc----cccCCCCc----cccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHH
Q 001668 157 VLCTTNTLAHGINLPAHTVVIKSTQ----YFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228 (1034)
Q Consensus 157 VLVaT~tLa~GVNLPav~vVI~~t~----~y~~~~~~----~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y 228 (1034)
|||||+++++|||+|++++||+++. .|++..|. ..++|..+|.||+|||||. ..|.||-+.+..+ |
T Consensus 268 VlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~---~ 341 (812)
T PRK11664 268 VVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ---A 341 (812)
T ss_pred EEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH---H
Confidence 9999999999999999999999863 48877664 2467889999999999997 4999997765443 3
Q ss_pred HHHhcC--cccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHH
Q 001668 229 ENLLNG--CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQ 306 (1034)
Q Consensus 229 ~~ll~~--~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~ 306 (1034)
..+... ++-..+.|. ..+.. +..-.+.+..+ +.| ++..-...+.+
T Consensus 342 ~~l~~~~~PEI~r~dL~----~~~L~-l~~~g~~~~~~-~~~---------------------------ld~P~~~~~~~ 388 (812)
T PRK11664 342 ERAAAQSEPEILHSDLS----GLLLE-LLQWGCHDPAQ-LSW---------------------------LDQPPAAALAA 388 (812)
T ss_pred hhCccCCCCceeccchH----HHHHH-HHHcCCCCHHh-CCC---------------------------CCCCCHHHHHH
Confidence 333322 222223332 22221 11111222211 011 12222344567
Q ss_pred HHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHh
Q 001668 307 KVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ 350 (1034)
Q Consensus 307 ~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~ 350 (1034)
++..|...|.| |.++ ..|.+|+.|+.+.+++.-+++++.
T Consensus 389 A~~~L~~lgal--d~~g---~lT~~G~~m~~lp~~Prla~~ll~ 427 (812)
T PRK11664 389 AKRLLQQLGAL--DGQG---RLTARGRKMAALGNDPRLAAMLVA 427 (812)
T ss_pred HHHHHHHCCCC--CCCC---CcCHHHHHHHhcCCchHHHHHHHH
Confidence 89999999999 6555 579999999999999999988875
No 45
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.80 E-value=1.1e-18 Score=221.76 Aligned_cols=289 Identities=16% Similarity=0.164 Sum_probs=187.9
Q ss_pred CCCCcEEEEccCccCHHHHHHHhCCCCCcEE------eccccceecch---------HHHHHHHHHhh--cCCCcEEEEc
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIK------RFGEEMRPVKL---------TTKVFDILMQY--SRGKSALVFC 75 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL~~~~~~i~------~f~~~~Rpv~L---------~~~v~~~l~~~--~~~~~~LVFv 75 (1034)
.+++|+|+||||++ .+.++++++..+. +. .....|+|... ...+...+... ...+.+|||+
T Consensus 209 rpdLKlIlmSATld-~~~fa~~F~~apv-I~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFL 286 (1283)
T TIGR01967 209 RPDLKIIITSATID-PERFSRHFNNAPI-IEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFL 286 (1283)
T ss_pred CCCCeEEEEeCCcC-HHHHHHHhcCCCE-EEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 35789999999995 7889999874321 11 11112233211 01122223221 2457899999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCc
Q 001668 76 STRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDV 155 (1034)
Q Consensus 76 ~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~i 155 (1034)
+++++++.++..|.... .. ..-|..+||+|++++|..+++.+ +..
T Consensus 287 pg~~EI~~l~~~L~~~~----~~-----------------------------~~~VlpLhg~Ls~~eQ~~vf~~~--~~r 331 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRN----LR-----------------------------HTEILPLYARLSNKEQQRVFQPH--SGR 331 (1283)
T ss_pred CCHHHHHHHHHHHHhcC----CC-----------------------------CcEEEeccCCCCHHHHHHHhCCC--CCc
Confidence 99999999999886531 10 01278899999999999986654 347
Q ss_pred ceEEeccccccccCCCCeEEEEecc----ccccCCCCcc----ccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHH
Q 001668 156 QVLCTTNTLAHGINLPAHTVVIKST----QYFNKEKGLY----MEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227 (1034)
Q Consensus 156 kVLVaT~tLa~GVNLPav~vVI~~t----~~y~~~~~~~----~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~ 227 (1034)
+|||||+++++||++|++.+||+.+ .+|++..+.. .++|.++|.||+|||||.| .|.||-+.+.++
T Consensus 332 kIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~--- 405 (1283)
T TIGR01967 332 RIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEED--- 405 (1283)
T ss_pred eEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHH---
Confidence 9999999999999999999999976 4577765542 5678899999999999986 999997765443
Q ss_pred HHHHhcC--cccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHH
Q 001668 228 YENLLNG--CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCV 305 (1034)
Q Consensus 228 y~~ll~~--~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~ 305 (1034)
|..+... ++...+.|.+. +..-...| +.++. .+ ..++..-.+.+.
T Consensus 406 ~~~~~~~~~PEIlR~~L~~v----iL~l~~lg-~~di~--------------------~f--------~fldpP~~~~i~ 452 (1283)
T TIGR01967 406 FNSRPEFTDPEILRTNLASV----ILQMLALR-LGDIA--------------------AF--------PFIEAPDPRAIR 452 (1283)
T ss_pred HHhhhhccCcccccccHHHH----HHHHHhcC-CCCcc--------------------cc--------cCCCCCCHHHHH
Confidence 3332221 33223333221 11111111 11111 11 112222234556
Q ss_pred HHHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCCCChHHHHHHhhccccccccccChhHH
Q 001668 306 QKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEK 380 (1034)
Q Consensus 306 ~~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek 380 (1034)
.++..|...|.| |.++....+|.+|+.|+.++++|..+++++......+...++.+.|.-.+ .+...++.++
T Consensus 453 ~A~~~L~~LGAl--d~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~-~dp~~~p~~~ 524 (1283)
T TIGR01967 453 DGFRLLEELGAL--DDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSI-QDPRERPMEK 524 (1283)
T ss_pred HHHHHHHHCCCC--CCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcCCCcchh
Confidence 788999999999 55543356899999999999999999999875555577777776665332 3444444443
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1e-18 Score=206.30 Aligned_cols=184 Identities=26% Similarity=0.366 Sum_probs=147.4
Q ss_pred CChhhhhcCCCCCcEEEEccCccC--HHHHHHHhCCCCCcEEecccccee-cchHHHH-------HHHHHh--hcCCCcE
Q 001668 4 CNPEMKSSSLASVRFLAVSATIPN--IEDIAEWLNVPVQGIKRFGEEMRP-VKLTTKV-------FDILMQ--YSRGKSA 71 (1034)
Q Consensus 4 ~l~~L~~~~~~~~riI~lSATlpn--~~dla~wL~~~~~~i~~f~~~~Rp-v~L~~~v-------~~~l~~--~~~~~~~ 71 (1034)
++.+++...+ ++.+++|+||.+. ..|+..-|+.....++.-+.+ || +..+..- +..+.. ...+++.
T Consensus 156 ~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd-RpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~G 233 (590)
T COG0514 156 RLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD-RPNLALKVVEKGEPSDQLAFLATVLPQLSKSG 233 (590)
T ss_pred HHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC-CchhhhhhhhcccHHHHHHHHHhhccccCCCe
Confidence 4445555544 8899999999987 788999998876555533222 32 1111100 123332 3446779
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhh
Q 001668 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFL 151 (1034)
Q Consensus 72 LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~ 151 (1034)
||||.||+.++.+|++|... |. .+++|||||+.++|..+++.|.
T Consensus 234 IIYc~sRk~~E~ia~~L~~~----g~--------------------------------~a~~YHaGl~~~eR~~~q~~f~ 277 (590)
T COG0514 234 IIYCLTRKKVEELAEWLRKN----GI--------------------------------SAGAYHAGLSNEERERVQQAFL 277 (590)
T ss_pred EEEEeeHHhHHHHHHHHHHC----CC--------------------------------ceEEecCCCCHHHHHHHHHHHh
Confidence 99999999999999999865 22 2889999999999999999999
Q ss_pred cCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHH
Q 001668 152 KGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENL 231 (1034)
Q Consensus 152 ~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~l 231 (1034)
.+.++|+|||..++||||-|+++.||+++ .|.+++.|.|-+|||||.| ....|+++....+......+
T Consensus 278 ~~~~~iiVAT~AFGMGIdKpdVRfViH~~----------lP~s~EsYyQE~GRAGRDG--~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 278 NDEIKVMVATNAFGMGIDKPDVRFVIHYD----------LPGSIESYYQETGRAGRDG--LPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred cCCCcEEEEeccccCccCCCCceEEEEec----------CCCCHHHHHHHHhhccCCC--CcceEEEeeccccHHHHHHH
Confidence 99999999999999999999999999877 8999999999999999998 89999999999988877778
Q ss_pred hcCccc
Q 001668 232 LNGCEM 237 (1034)
Q Consensus 232 l~~~~p 237 (1034)
+....|
T Consensus 346 i~~~~~ 351 (590)
T COG0514 346 IEQSKP 351 (590)
T ss_pred HHhhcc
Confidence 777655
No 47
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.79 E-value=6.2e-19 Score=198.16 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=132.8
Q ss_pred hhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEe-ccc------------cceecchHHH---HHHHHHhhcCCCc
Q 001668 8 MKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKR-FGE------------EMRPVKLTTK---VFDILMQYSRGKS 70 (1034)
Q Consensus 8 L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~-f~~------------~~Rpv~L~~~---v~~~l~~~~~~~~ 70 (1034)
+....+..+|.++||||++. +++++.-.-.. ..++. ... .|--++...+ +|..+.+.....+
T Consensus 254 Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~K 332 (543)
T KOG0342|consen 254 IIKILPKQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYK 332 (543)
T ss_pred HHHhccccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCce
Confidence 33445678999999999996 99998855333 22221 111 1222222222 2555666665689
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHh
Q 001668 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF 150 (1034)
Q Consensus 71 ~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F 150 (1034)
+||||+|...+...|..|... ...|.-+||++++..|..+...|
T Consensus 333 iiVF~sT~~~vk~~~~lL~~~------------------------------------dlpv~eiHgk~~Q~kRT~~~~~F 376 (543)
T KOG0342|consen 333 IIVFFSTCMSVKFHAELLNYI------------------------------------DLPVLEIHGKQKQNKRTSTFFEF 376 (543)
T ss_pred EEEEechhhHHHHHHHHHhhc------------------------------------CCchhhhhcCCcccccchHHHHH
Confidence 999999999999998887632 12266789999999999999999
Q ss_pred hcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHH
Q 001668 151 LKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228 (1034)
Q Consensus 151 ~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y 228 (1034)
++.+-.|||||+++|||+|+|+|++||+++ .|-++.+|+||+||+||.| ..|+++++..+.+..+.
T Consensus 377 ~kaesgIL~cTDVaARGlD~P~V~~VvQ~~----------~P~d~~~YIHRvGRTaR~g--k~G~alL~l~p~El~Fl 442 (543)
T KOG0342|consen 377 CKAESGILVCTDVAARGLDIPDVDWVVQYD----------PPSDPEQYIHRVGRTAREG--KEGKALLLLAPWELGFL 442 (543)
T ss_pred hhcccceEEecchhhccCCCCCceEEEEeC----------CCCCHHHHHHHhccccccC--CCceEEEEeChhHHHHH
Confidence 999999999999999999999999999977 6889999999999999987 89999988776665433
No 48
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=1.8e-18 Score=187.25 Aligned_cols=169 Identities=20% Similarity=0.296 Sum_probs=129.1
Q ss_pred CCCCcEEEEccCccCHHHHHHHhCCCCCc-EEeccccceecc----hHHH------------HHHHHHhhcC--CCcEEE
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLNVPVQG-IKRFGEEMRPVK----LTTK------------VFDILMQYSR--GKSALV 73 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL~~~~~~-i~~f~~~~Rpv~----L~~~------------v~~~l~~~~~--~~~~LV 73 (1034)
+..+|.++||||+.+ .+...++++-.. +..+......++ |.+. .|..+..+.+ .+.++|
T Consensus 182 P~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simI 259 (442)
T KOG0340|consen 182 PKPRQTLLFSATITD--TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMI 259 (442)
T ss_pred CCccceEEEEeehhh--HHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEE
Confidence 456899999999985 233344554322 222222222222 2222 1344444443 789999
Q ss_pred EcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcC
Q 001668 74 FCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG 153 (1034)
Q Consensus 74 Fv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G 153 (1034)
|+++.++|+.++..|... ...++.+|+-|++.+|...+..|+.+
T Consensus 260 Fvnttr~cQ~l~~~l~~l------------------------------------e~r~~~lHs~m~Q~eR~~aLsrFrs~ 303 (442)
T KOG0340|consen 260 FVNTTRECQLLSMTLKNL------------------------------------EVRVVSLHSQMPQKERLAALSRFRSN 303 (442)
T ss_pred EeehhHHHHHHHHHHhhh------------------------------------ceeeeehhhcchHHHHHHHHHHHhhc
Confidence 999999999999888653 22388899999999999999999999
Q ss_pred CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHH
Q 001668 154 DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENL 231 (1034)
Q Consensus 154 ~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~l 231 (1034)
.++|||||++++||+|+|.+..|||++ .|.++.+|+||+||++|+| +.|.+|-+..+.+.++...+
T Consensus 304 ~~~iliaTDVAsRGLDIP~V~LVvN~d----------iPr~P~~yiHRvGRtARAG--R~G~aiSivt~rDv~l~~ai 369 (442)
T KOG0340|consen 304 AARILIATDVASRGLDIPTVELVVNHD----------IPRDPKDYIHRVGRTARAG--RKGMAISIVTQRDVELLQAI 369 (442)
T ss_pred CccEEEEechhhcCCCCCceeEEEecC----------CCCCHHHHHHhhcchhccc--CCcceEEEechhhHHHHHHH
Confidence 999999999999999999999999988 8999999999999999998 99999977767666655443
No 49
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.77 E-value=2.7e-18 Score=189.42 Aligned_cols=274 Identities=12% Similarity=0.034 Sum_probs=208.9
Q ss_pred ccchhhHHHHHh-CCCCCChHHHHHHhhccccccccccChhHHHHHhHhhhccCCcceeeecCCccccccccchhHHHHH
Q 001668 339 YLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIF 417 (1034)
Q Consensus 339 yI~~~T~~~f~~-~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L~~~~~~~l~~~i~~~~~~~~~~~~~~~~Ka~ 417 (1034)
.|++.||..|+. +....++.++|+++|.|.||..+.. ++ +..-..
T Consensus 226 gvh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~p-----------------------k~-----------pk~~~e 271 (610)
T COG5407 226 GVHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMNP-----------------------KG-----------PKCTLE 271 (610)
T ss_pred ceeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhCC-----------------------CC-----------CchhHH
Confidence 478899999986 4446899999999999999876522 11 223456
Q ss_pred HHHHHHhcCCCCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhcCCCCcccccccCCCCHH
Q 001668 418 VLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMV 497 (1034)
Q Consensus 418 vLLqAhl~r~~~~~d~sL~~D~~~Il~~a~rLl~am~eIa~~~~~~~~~l~~l~L~q~L~QalW~~~~~~LlQLP~I~~~ 497 (1034)
.||++|++|..+ ..+ ...+|+.++.-|+.|+++|+..+++...+.+.+.+.|||+||++-+.+.+++||||...+
T Consensus 272 kll~dhlnr~~s-~~f----n~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E 346 (610)
T COG5407 272 KLLGDHLNRARS-VEF----NEYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVE 346 (610)
T ss_pred HHHHHHHhHhhc-ccc----hheehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHH
Confidence 788999999743 222 378999999999999999999999999999999999999999999887779999999999
Q ss_pred HHHHHHhCCCCCHHHHhhCChHHHHHhhC-CCCchhHHHHHHHhcCCCeeEE-E--E---EEEEeecCCeEEEEEEEEEe
Q 001668 498 TAKALHSMGIKSFETLAEADPRRIEIVTG-RKYPFGNHIKESLLSLPPKVDM-K--I---EEIKCQGQGKSKLLITLTRL 570 (1034)
Q Consensus 498 ~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~-~~~~~g~~I~~~~~~lP~~l~v-~--~---ke~~v~~~~~~~l~Vkl~r~ 570 (1034)
-++.+--+.|.++.+|..+.+++....++ ..-..-+.+.+++..+|+ +.+ . | .+..++++++..+.++.-..
T Consensus 347 ~~~~~s~r~I~~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr-~~~~~a~flv~~d~~it~~s~~~vslk~~~g 425 (610)
T COG5407 347 YAQRVSLRLIEGMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPR-YFLLQAPFLVFEDLFITEKSKERVSLKGYLG 425 (610)
T ss_pred HHHHhhhhhhhhhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCc-eEEEecceeecccceecccceeeEEEEEEec
Confidence 99988777899999999999999887764 222344668889999984 443 2 2 26678998887666554332
Q ss_pred c------------------------------------CCccc-Ccccc-------ceEEEEecCCCeEEEeeeeeeeccC
Q 001668 571 S------------------------------------QSVQS-TKRHY-------ADMIVGAEENNMVLFHEKIRVDEFS 606 (1034)
Q Consensus 571 ~------------------------------------p~~~~-~k~~~-------~wv~V~D~k~n~Il~~~ri~~~~~~ 606 (1034)
. +..|+ .||+| |||.|.+++++.++.+ +++..++.
T Consensus 426 ~~~~pe~~ts~~~~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~Iip-~~Si~~v~ 504 (610)
T COG5407 426 AIPGPEHRTSALNVYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYIIP-GGSIATVS 504 (610)
T ss_pred cccCCcccccccccccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEEeC-Cccccccc
Confidence 1 01122 24444 4799999999888866 67766554
Q ss_pred -cceEEEEEeeCCC-CceEEEEEEEEeCceeeccceEEEEEEeecCccc
Q 001668 607 -SPYSVTVLSSNPQ-QGKLTVKADLIFEEYIGVDIHQKLVLVKESNSNV 653 (1034)
Q Consensus 607 -~~~~v~l~f~aP~-~G~~~~~v~liSDsYvG~D~~~~i~l~~e~~~~~ 653 (1034)
..++-.++++.|+ .|+..+.+++++-.|+|.+....|.+...++++-
T Consensus 505 K~~~d~Ri~~dv~pvd~T~~~ql~~~ap~~vg~f~~~~ivm~t~d~~~~ 553 (610)
T COG5407 505 KVTLDRRIQGDVAPVDKTGGKQLIVHAPFMVGAFSVKWIVMLTVDNVIY 553 (610)
T ss_pred hhhhhcccccccCccccccceeeeecCchhhccceeeeEEEEeechhhh
Confidence 2344556677776 5778899999999999999988888876555554
No 50
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=3e-18 Score=196.94 Aligned_cols=299 Identities=17% Similarity=0.150 Sum_probs=214.5
Q ss_pred CCCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecch-------HHHHHHHHH------hhcCCCcEEEEcCCHH
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKL-------TTKVFDILM------QYSRGKSALVFCSTRK 79 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L-------~~~v~~~l~------~~~~~~~~LVFv~sRk 79 (1034)
++.++++..|||+ +++.+..|++.-+ ||++....-||.+ ..++-..+. .-.+.+-+|||.....
T Consensus 408 RpdLKllIsSAT~-DAekFS~fFDdap--IF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQe 484 (902)
T KOG0923|consen 408 RPDLKLLISSATM-DAEKFSAFFDDAP--IFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQE 484 (902)
T ss_pred CCcceEEeecccc-CHHHHHHhccCCc--EEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHH
Confidence 4789999999998 6999999997543 6666554444432 112211111 1235688999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEE
Q 001668 80 GAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLC 159 (1034)
Q Consensus 80 ~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLV 159 (1034)
+.+.+...|.+.+...|...+-+ =|.++|++|+.+.+..|++---.|..+|++
T Consensus 485 EIEt~~e~l~~~~~~LGski~el---------------------------iv~PiYaNLPselQakIFePtP~gaRKVVL 537 (902)
T KOG0923|consen 485 EIETVKENLKERCRRLGSKIREL---------------------------IVLPIYANLPSELQAKIFEPTPPGARKVVL 537 (902)
T ss_pred HHHHHHHHHHHHHHHhccccceE---------------------------EEeeccccCChHHHHhhcCCCCCCceeEEE
Confidence 99999988888765555332211 278999999999999999999999999999
Q ss_pred eccccccccCCCCeEEEEecc----ccccCCCCc----cccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHH
Q 001668 160 TTNTLAHGINLPAHTVVIKST----QYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENL 231 (1034)
Q Consensus 160 aT~tLa~GVNLPav~vVI~~t----~~y~~~~~~----~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~l 231 (1034)
||++++..+.|+++.+||..+ ..|++..|+ ..|+|.+...||+|||||.| .|+|+-+.. ...|.+.
T Consensus 538 ATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt---~~aY~~e 611 (902)
T KOG0923|consen 538 ATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYT---AWAYEHE 611 (902)
T ss_pred eecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeec---hhhhhhh
Confidence 999999999999999999774 458888886 48899999999999999997 999994443 3445555
Q ss_pred hcC-cccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHHHHHH
Q 001668 232 LNG-CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDE 310 (1034)
Q Consensus 232 l~~-~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~~l~~ 310 (1034)
+.. ..| .-....|....+..-.+| +.|. +..+.++..-.+.+..+|..
T Consensus 612 LE~~t~P--EIqRtnL~nvVL~LkSLG----I~Dl-------------------------~~FdFmDpPp~etL~~aLE~ 660 (902)
T KOG0923|consen 612 LEEMTVP--EIQRTNLGNVVLLLKSLG----IHDL-------------------------IHFDFLDPPPTETLLKALEQ 660 (902)
T ss_pred hccCCCc--ceeeccchhHHHHHHhcC----cchh-------------------------cccccCCCCChHHHHHHHHH
Confidence 544 212 111111221111111111 1111 12233444455566678899
Q ss_pred HHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCCCChHHHHHHhhccccccccccChhHHHHH
Q 001668 311 LSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLL 383 (1034)
Q Consensus 311 L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek~~L 383 (1034)
|...|.+ +..| ++|.+|+.|+.|+++|.-.++++.....-+..+|+.+.|+...+..+..|+.++..-
T Consensus 661 LyaLGAL--n~~G---eLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ 728 (902)
T KOG0923|consen 661 LYALGAL--NHLG---ELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVH 728 (902)
T ss_pred HHHhhcc--cccc---chhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhh
Confidence 9999998 5555 679999999999999999999986333236689999999999999998888876543
No 51
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=7.8e-18 Score=188.03 Aligned_cols=179 Identities=22% Similarity=0.241 Sum_probs=133.5
Q ss_pred hhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEeccccc--eecchHH---------HH---HHHHHhhcCCCcEE
Q 001668 8 MKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEM--RPVKLTT---------KV---FDILMQYSRGKSAL 72 (1034)
Q Consensus 8 L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~--Rpv~L~~---------~v---~~~l~~~~~~~~~L 72 (1034)
+.+..+.++|+-+||||... .+++++.--.++..+.+-..+. .|..|.. ++ +..+.. ...+++|
T Consensus 181 ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~-~~~kK~i 259 (567)
T KOG0345|consen 181 ILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNN-NKDKKCI 259 (567)
T ss_pred HHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhc-cccccEE
Confidence 33444568999999999986 7888765433433322211111 3322222 11 233332 4568999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhc
Q 001668 73 VFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLK 152 (1034)
Q Consensus 73 VFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~ 152 (1034)
||.+|+..++.....+..... ...+..+||.|.+..|..+.+.|++
T Consensus 260 VFF~TCasVeYf~~~~~~~l~----------------------------------~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 260 VFFPTCASVEYFGKLFSRLLK----------------------------------KREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred EEecCcchHHHHHHHHHHHhC----------------------------------CCcEEEecchhcchhHHHHHHHHHh
Confidence 999999999999887765421 1237789999999999999999999
Q ss_pred CCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHh
Q 001668 153 GDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLL 232 (1034)
Q Consensus 153 G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll 232 (1034)
-.-.||+|||++|||+|+|++.+||+++ .|.+++.|+||+|||||.| +.|.||++..+. ...|..++
T Consensus 306 ~~~~vl~~TDVaARGlDip~iD~VvQ~D----------pP~~~~~FvHR~GRTaR~g--r~G~Aivfl~p~-E~aYveFl 372 (567)
T KOG0345|consen 306 LSNGVLFCTDVAARGLDIPGIDLVVQFD----------PPKDPSSFVHRCGRTARAG--REGNAIVFLNPR-EEAYVEFL 372 (567)
T ss_pred ccCceEEeehhhhccCCCCCceEEEecC----------CCCChhHHHhhcchhhhcc--CccceEEEeccc-HHHHHHHH
Confidence 8889999999999999999999999866 6778999999999999998 999999888774 45566666
Q ss_pred cC
Q 001668 233 NG 234 (1034)
Q Consensus 233 ~~ 234 (1034)
.-
T Consensus 373 ~i 374 (567)
T KOG0345|consen 373 RI 374 (567)
T ss_pred Hh
Confidence 54
No 52
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=1.7e-17 Score=190.74 Aligned_cols=304 Identities=15% Similarity=0.176 Sum_probs=213.4
Q ss_pred CCCCcEEEEccCccCHHHHHHHhC-CCCCcEEeccccceec-------chHHHHHHHHHh------hcCCCcEEEEcCCH
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLN-VPVQGIKRFGEEMRPV-------KLTTKVFDILMQ------YSRGKSALVFCSTR 78 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL~-~~~~~i~~f~~~~Rpv-------~L~~~v~~~l~~------~~~~~~~LVFv~sR 78 (1034)
+.++++|..|||+ |++.++.|+| ++ .|++....-|| |...++-..+.+ ....+.+|||.+.+
T Consensus 498 RrdlKliVtSATm-~a~kf~nfFgn~p---~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 498 RRDLKLIVTSATM-DAQKFSNFFGNCP---QFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred hccceEEEeeccc-cHHHHHHHhCCCc---eeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 4589999999998 6999999999 43 33333333333 333333333322 12347899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceE
Q 001668 79 KGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL 158 (1034)
Q Consensus 79 k~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVL 158 (1034)
.+++-+...|...+.+.... + .-...|..+++.|+..-+..|++.--.|..+++
T Consensus 574 ediE~t~~~i~~~l~ql~~~-~-------------------------~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~I 627 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSA-P-------------------------TTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCI 627 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcC-C-------------------------CCceEEEeehhhCchhhhhhhcccCCCCceeEE
Confidence 99998888887654332111 0 012238899999999999999999999999999
Q ss_pred EeccccccccCCCCeEEEEecc----ccccCCCCc----cccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHH
Q 001668 159 CTTNTLAHGINLPAHTVVIKST----QYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYEN 230 (1034)
Q Consensus 159 VaT~tLa~GVNLPav~vVI~~t----~~y~~~~~~----~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ 230 (1034)
|||++++..+.+|++.+||... +.|++..|. ..|+|.....||+|||||.| .|.|+-+.... .+...
T Consensus 628 vATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe~--ay~~e 702 (1042)
T KOG0924|consen 628 VATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTED--AYKNE 702 (1042)
T ss_pred EeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhhh--HHHhh
Confidence 9999999999999999999764 568888774 58999999999999999986 99999554322 12233
Q ss_pred HhcCcccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHHHHHH
Q 001668 231 LLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDE 310 (1034)
Q Consensus 231 ll~~~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~~l~~ 310 (1034)
|+..+.| +..+.++..-+.+..--.++++++| +.++....+.+.+++..
T Consensus 703 ml~stvP------EIqRTNl~nvVLlLkslgV~dll~F-------------------------dFmD~Pped~~~~sly~ 751 (1042)
T KOG0924|consen 703 MLPSTVP------EIQRTNLSNVVLLLKSLGVDDLLKF-------------------------DFMDPPPEDNLLNSLYQ 751 (1042)
T ss_pred cccCCCc------hhhhcchhhHHHHHHhcChhhhhCC-------------------------CcCCCCHHHHHHHHHHH
Confidence 4433333 2233333333332222233332222 33555666777788999
Q ss_pred HHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCCCChHHHHHHhhccccccccccChhHHHHHhHhhh
Q 001668 311 LSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINI 388 (1034)
Q Consensus 311 L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L~~ 388 (1034)
|...|.| +..| .+|.+|+.|+.|.++|.-.++++.....-+..+||.++|+-. -..+..|+.|+.+-..+..
T Consensus 752 Lw~LGAl--~~~g---~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLS-vp~VF~rpker~eead~ar 823 (1042)
T KOG0924|consen 752 LWTLGAL--DNTG---QLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLS-VPAVFYRPKEREEEADAAR 823 (1042)
T ss_pred HHHhhcc--ccCC---ccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhc-ccceeeccccchhhhhhHH
Confidence 9999999 5555 469999999999999999999987777778888888887622 1356778777776666553
No 53
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.74 E-value=2.1e-17 Score=187.01 Aligned_cols=181 Identities=20% Similarity=0.231 Sum_probs=139.0
Q ss_pred hhhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEec--ccccee---------cchHHHH---HHHHHhhcCCCcE
Q 001668 7 EMKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRF--GEEMRP---------VKLTTKV---FDILMQYSRGKSA 71 (1034)
Q Consensus 7 ~L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f--~~~~Rp---------v~L~~~v---~~~l~~~~~~~~~ 71 (1034)
.+.+..+...|+++||||-.+ +.|+|+.--.++..|-+. ...-.| |++..++ |..+..+ ...+.
T Consensus 238 ~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~sh-lk~K~ 316 (758)
T KOG0343|consen 238 AIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSH-LKKKS 316 (758)
T ss_pred HHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhc-cccce
Confidence 445566779999999999885 999998754454433222 112233 3443332 4455444 35689
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhh
Q 001668 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFL 151 (1034)
Q Consensus 72 LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~ 151 (1034)
|||++|++++..++..++.. ..|. .+..+||+|++..|..|...|-
T Consensus 317 iVF~SscKqvkf~~e~F~rl--rpg~--------------------------------~l~~L~G~~~Q~~R~ev~~~F~ 362 (758)
T KOG0343|consen 317 IVFLSSCKQVKFLYEAFCRL--RPGI--------------------------------PLLALHGTMSQKKRIEVYKKFV 362 (758)
T ss_pred EEEEehhhHHHHHHHHHHhc--CCCC--------------------------------ceeeeccchhHHHHHHHHHHHH
Confidence 99999999999998887654 1121 2677899999999999999999
Q ss_pred cCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHH
Q 001668 152 KGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENL 231 (1034)
Q Consensus 152 ~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~l 231 (1034)
...--||+||++++||+|+|+|.+||+.+ .|-++.+|+||+||++|- +..|.++++..+.+..++...
T Consensus 363 ~~~~~vLF~TDv~aRGLDFpaVdwViQ~D----------CPedv~tYIHRvGRtAR~--~~~G~sll~L~psEeE~~l~~ 430 (758)
T KOG0343|consen 363 RKRAVVLFCTDVAARGLDFPAVDWVIQVD----------CPEDVDTYIHRVGRTARY--KERGESLLMLTPSEEEAMLKK 430 (758)
T ss_pred HhcceEEEeehhhhccCCCcccceEEEec----------CchhHHHHHHHhhhhhcc--cCCCceEEEEcchhHHHHHHH
Confidence 99999999999999999999999999977 788999999999999995 499999988777775555555
Q ss_pred hcC
Q 001668 232 LNG 234 (1034)
Q Consensus 232 l~~ 234 (1034)
|+.
T Consensus 431 Lq~ 433 (758)
T KOG0343|consen 431 LQK 433 (758)
T ss_pred HHH
Confidence 544
No 54
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.73 E-value=2.2e-17 Score=192.44 Aligned_cols=292 Identities=18% Similarity=0.199 Sum_probs=204.4
Q ss_pred CCCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceec-------chHHHHHHHH------HhhcCCCcEEEEcCCHH
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPV-------KLTTKVFDIL------MQYSRGKSALVFCSTRK 79 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv-------~L~~~v~~~l------~~~~~~~~~LVFv~sRk 79 (1034)
++++++|.+|||+ |++.+++|++.-+ ++.+....-|| |...++...+ ....+.+-+|||.+.+.
T Consensus 193 R~~LklIimSATl-da~kfS~yF~~a~--i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 193 RPDLKLIIMSATL-DAEKFSEYFNNAP--ILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred CCCceEEEEeeee-cHHHHHHHhcCCc--eEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHH
Confidence 4579999999999 6999999997632 33332222222 2223332221 12245678999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEE
Q 001668 80 GAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLC 159 (1034)
Q Consensus 80 ~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLV 159 (1034)
+.+.++..|.+.....+...+ .=+.++||+|+.+++..|++.-..|..+|++
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~----------------------------~~~lply~aL~~e~Q~rvF~p~p~g~RKvIl 321 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCP----------------------------ELILPLYGALPSEEQSRVFDPAPPGKRKVIL 321 (674)
T ss_pred HHHHHHHHHHHHhhhccccCc----------------------------ceeeeecccCCHHHhhccccCCCCCcceEEE
Confidence 999999999876433221111 0267899999999999999999999999999
Q ss_pred eccccccccCCCCeEEEEecc----ccccCCCCc----cccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHH
Q 001668 160 TTNTLAHGINLPAHTVVIKST----QYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENL 231 (1034)
Q Consensus 160 aT~tLa~GVNLPav~vVI~~t----~~y~~~~~~----~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~l 231 (1034)
||++++..|.+|.+.+||..+ +.|++..|. ..|+|..+..||.|||||.| .|+|+=+...+ .|.+|
T Consensus 322 sTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~---~~~~~ 395 (674)
T KOG0922|consen 322 STNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTES---AYDKM 395 (674)
T ss_pred EcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHH---HHhhc
Confidence 999999999999999999875 568887765 47899999999999999986 99999555433 35666
Q ss_pred hcCccc--ccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHHHHH
Q 001668 232 LNGCEM--VESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVD 309 (1034)
Q Consensus 232 l~~~~p--ieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~~l~ 309 (1034)
.....| -.+.| ...++.-.+ +|+.+-+..+.++.+-.+.+..+|.
T Consensus 396 ~~~~~PEI~R~~L----s~~vL~Lka-----------------------------lgi~d~l~F~f~d~P~~~~l~~AL~ 442 (674)
T KOG0922|consen 396 PLQTVPEIQRVNL----SSAVLQLKA-----------------------------LGINDPLRFPFIDPPPPEALEEALE 442 (674)
T ss_pred ccCCCCceeeech----HHHHHHHHh-----------------------------cCCCCcccCCCCCCCChHHHHHHHH
Confidence 665544 11111 111111111 1121112223344455566678899
Q ss_pred HHHHCCCcEEcCCCCccccCC-CcccccccccchhhHHHHHhCCCCCChHHHHHHhhccccccccccChhHH
Q 001668 310 ELSCHQMIWTDEDGFLLKPQE-PGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEK 380 (1034)
Q Consensus 310 ~L~~~~~I~~d~~~~~l~~t~-lG~i~s~yyI~~~T~~~f~~~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek 380 (1034)
.|...|.| |++|. .|+ +|+.|+.+++.+...++++...+.-+..+++.+.|.-. -..+..|..++
T Consensus 443 ~L~~lgal--d~~g~---lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Ls-v~~~f~~p~~~ 508 (674)
T KOG0922|consen 443 ELYSLGAL--DDRGK---LTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLS-VQSVFSRPKDK 508 (674)
T ss_pred HHHhcCcc--cCcCC---cCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeee-ccceecCccch
Confidence 99999999 66664 355 99999999999999999998777778888888877633 34455554443
No 55
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.72 E-value=2.1e-17 Score=179.85 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=127.3
Q ss_pred CCCCcEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchHHHH---------HHHHH-hhcCCCcEEEEcCCHHHH
Q 001668 13 LASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV---------FDILM-QYSRGKSALVFCSTRKGA 81 (1034)
Q Consensus 13 ~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v---------~~~l~-~~~~~~~~LVFv~sRk~~ 81 (1034)
..++|+++||||+|. ++-+|+---+.+..+-+-...-....+.+.+ ...+. -.....|+||||..+.++
T Consensus 355 K~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DV 434 (610)
T KOG0341|consen 355 KGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADV 434 (610)
T ss_pred hhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccCh
Confidence 457999999999995 8888876666654332221221222222221 12222 234567999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEec
Q 001668 82 QEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTT 161 (1034)
Q Consensus 82 e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT 161 (1034)
..+.++|.-.+. .+..+|||-.+++|....++|+.|+-.|||||
T Consensus 435 D~IhEYLLlKGV------------------------------------EavaIHGGKDQedR~~ai~afr~gkKDVLVAT 478 (610)
T KOG0341|consen 435 DDIHEYLLLKGV------------------------------------EAVAIHGGKDQEDRHYAIEAFRAGKKDVLVAT 478 (610)
T ss_pred HHHHHHHHHccc------------------------------------eeEEeecCcchhHHHHHHHHHhcCCCceEEEe
Confidence 999988854421 16678999999999999999999999999999
Q ss_pred cccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 162 NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 162 ~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
++++-|+|+|++.+||||+ +|-.+..|+||+||+||.| +.|.+..+.+...
T Consensus 479 DVASKGLDFp~iqHVINyD----------MP~eIENYVHRIGRTGRsg--~~GiATTfINK~~ 529 (610)
T KOG0341|consen 479 DVASKGLDFPDIQHVINYD----------MPEEIENYVHRIGRTGRSG--KTGIATTFINKNQ 529 (610)
T ss_pred cchhccCCCccchhhccCC----------ChHHHHHHHHHhcccCCCC--Ccceeeeeecccc
Confidence 9999999999999999988 8889999999999999998 8999998776543
No 56
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1.6e-17 Score=181.96 Aligned_cols=173 Identities=21% Similarity=0.307 Sum_probs=128.7
Q ss_pred hcCCCCCcEEEEccCccC-HHHHHH-HhCCCCCcEEeccccce---------ecchHHHHHH----HHHhhcCCCcEEEE
Q 001668 10 SSSLASVRFLAVSATIPN-IEDIAE-WLNVPVQGIKRFGEEMR---------PVKLTTKVFD----ILMQYSRGKSALVF 74 (1034)
Q Consensus 10 ~~~~~~~riI~lSATlpn-~~dla~-wL~~~~~~i~~f~~~~R---------pv~L~~~v~~----~l~~~~~~~~~LVF 74 (1034)
-..+++.|+++.|||.|. ++.+|. |+..+ -.+++-.-+.- -|+.....+. .+...+...++|||
T Consensus 393 ldiRPDRqtvmTSATWP~~VrrLa~sY~Kep-~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiF 471 (629)
T KOG0336|consen 393 LDIRPDRQTVMTSATWPEGVRRLAQSYLKEP-MIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIF 471 (629)
T ss_pred hhcCCcceeeeecccCchHHHHHHHHhhhCc-eEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEE
Confidence 345789999999999997 888886 44432 22211111111 1222222233 23456778899999
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCC
Q 001668 75 CSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGD 154 (1034)
Q Consensus 75 v~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ 154 (1034)
|..+..|..+...+.-. |.. ...+||+-.+.||+...+.|+.|.
T Consensus 472 v~~K~~AD~LSSd~~l~----gi~--------------------------------~q~lHG~r~Q~DrE~al~~~ksG~ 515 (629)
T KOG0336|consen 472 VSRKVMADHLSSDFCLK----GIS--------------------------------SQSLHGNREQSDREMALEDFKSGE 515 (629)
T ss_pred Eechhhhhhccchhhhc----ccc--------------------------------hhhccCChhhhhHHHHHHhhhcCc
Confidence 99988777666555432 211 345799999999999999999999
Q ss_pred cceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHH
Q 001668 155 VQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENL 231 (1034)
Q Consensus 155 ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~l 231 (1034)
++|||||++++||+|+|++++|++|+ +|.++.+|+||+||+||+| +.|.++.+....+......+
T Consensus 516 vrILvaTDlaSRGlDv~DiTHV~NyD----------FP~nIeeYVHRvGrtGRaG--r~G~sis~lt~~D~~~a~eL 580 (629)
T KOG0336|consen 516 VRILVATDLASRGLDVPDITHVYNYD----------FPRNIEEYVHRVGRTGRAG--RTGTSISFLTRNDWSMAEEL 580 (629)
T ss_pred eEEEEEechhhcCCCchhcceeeccC----------CCccHHHHHHHhcccccCC--CCcceEEEEehhhHHHHHHH
Confidence 99999999999999999999999988 8999999999999999998 99999977666665544433
No 57
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.72 E-value=1.1e-16 Score=195.07 Aligned_cols=170 Identities=20% Similarity=0.254 Sum_probs=118.8
Q ss_pred CCcEEEEccCcc-CHHHHHHHhCCCCCcEEecc-------ccceecc---------hH---HHHHHHHHhh--cCCCcEE
Q 001668 15 SVRFLAVSATIP-NIEDIAEWLNVPVQGIKRFG-------EEMRPVK---------LT---TKVFDILMQY--SRGKSAL 72 (1034)
Q Consensus 15 ~~riI~lSATlp-n~~dla~wL~~~~~~i~~f~-------~~~Rpv~---------L~---~~v~~~l~~~--~~~~~~L 72 (1034)
..|+|+||||++ +++.+++|++.+. .+..-. ..+.+.. +. ..+...+... ..++++|
T Consensus 321 ~rq~ILmSATl~~dv~~l~~~~~~p~-~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iL 399 (675)
T PHA02653 321 IRSLFLMTATLEDDRDRIKEFFPNPA-FVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGI 399 (675)
T ss_pred cCEEEEEccCCcHhHHHHHHHhcCCc-EEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEE
Confidence 358999999998 4788889987432 111100 0010000 00 1112223222 2457899
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHh-h
Q 001668 73 VFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF-L 151 (1034)
Q Consensus 73 VFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F-~ 151 (1034)
|||+++.+|+.+++.|..... ...+..+||+|++. +.+++.| +
T Consensus 400 VFlpg~~ei~~l~~~L~~~~~----------------------------------~~~v~~LHG~Lsq~--eq~l~~ff~ 443 (675)
T PHA02653 400 VFVASVSQCEEYKKYLEKRLP----------------------------------IYDFYIIHGKVPNI--DEILEKVYS 443 (675)
T ss_pred EEECcHHHHHHHHHHHHhhcC----------------------------------CceEEeccCCcCHH--HHHHHHHhc
Confidence 999999999999998865410 11288899999985 4555666 7
Q ss_pred cCCcceEEeccccccccCCCCeEEEEeccccccCC--CCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 152 KGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKE--KGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 152 ~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~--~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
+|..+|||||+++++|||+|++++||+++..+.+. .+...+.|.++|.||+|||||. ..|.|+-+.+..+
T Consensus 444 ~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~ 515 (675)
T PHA02653 444 SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDL 515 (675)
T ss_pred cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHH
Confidence 99999999999999999999999999987544432 2333567999999999999998 4899997765543
No 58
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=9.6e-17 Score=183.58 Aligned_cols=164 Identities=27% Similarity=0.360 Sum_probs=122.2
Q ss_pred CCCCcEEEEccCccC-HHHHHHHhCCC-CCcE--Eecccc-------ceecc---hHHHHHHHHHhhc---CC-----Cc
Q 001668 13 LASVRFLAVSATIPN-IEDIAEWLNVP-VQGI--KRFGEE-------MRPVK---LTTKVFDILMQYS---RG-----KS 70 (1034)
Q Consensus 13 ~~~~riI~lSATlpn-~~dla~wL~~~-~~~i--~~f~~~-------~Rpv~---L~~~v~~~l~~~~---~~-----~~ 70 (1034)
....|.++||||.|. ++.++..+... ...+ -.++.. .-.|. ...++++.+.... .. +.
T Consensus 260 ~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~ 339 (482)
T KOG0335|consen 260 KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEK 339 (482)
T ss_pred ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccce
Confidence 357899999999994 55555544322 1111 111111 11111 1222344443222 12 37
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHh
Q 001668 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF 150 (1034)
Q Consensus 71 ~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F 150 (1034)
++|||.|++.|..++..|... +.. .-.+||..++.+|...++.|
T Consensus 340 tlvFvEt~~~~d~l~~~l~~~----~~~--------------------------------~~sIhg~~tq~er~~al~~F 383 (482)
T KOG0335|consen 340 TLVFVETKRGADELAAFLSSN----GYP--------------------------------AKSIHGDRTQIEREQALNDF 383 (482)
T ss_pred EEEEeeccchhhHHHHHHhcC----CCC--------------------------------ceeecchhhhhHHHHHHHHh
Confidence 999999999999999998764 221 45689999999999999999
Q ss_pred hcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 151 LKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 151 ~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
++|.+.|||||+++|||+|+|.|.+||+|+ +|-+..+|+|||||+||.| ..|.++.+.+..+
T Consensus 384 r~g~~pvlVaT~VaaRGlDi~~V~hVInyD----------mP~d~d~YvHRIGRTGR~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 384 RNGKAPVLVATNVAARGLDIPNVKHVINYD----------MPADIDDYVHRIGRTGRVG--NGGRATSFFNEKN 445 (482)
T ss_pred hcCCcceEEEehhhhcCCCCCCCceeEEee----------cCcchhhHHHhccccccCC--CCceeEEEecccc
Confidence 999999999999999999999999999988 8889999999999999998 8999998887544
No 59
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.68 E-value=1.7e-16 Score=188.69 Aligned_cols=93 Identities=41% Similarity=0.627 Sum_probs=85.0
Q ss_pred hhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHH
Q 001668 120 DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTIL 199 (1034)
Q Consensus 120 d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~yl 199 (1034)
+..+-+.+.+|||+||+||....|..||-+||.|.++||+||.||+.|||+|..+||+-++ ...+++..|.
T Consensus 954 ~~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gD---------sLQL~plny~ 1024 (1330)
T KOG0949|consen 954 DFEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGD---------SLQLDPLNYK 1024 (1330)
T ss_pred cHHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEecc---------ccccCchhHH
Confidence 4455677889999999999999999999999999999999999999999999999999877 2567899999
Q ss_pred HhccccCCCCCCCccEEEEEec
Q 001668 200 QMCGRAGRPPFNDTGTVIIMTR 221 (1034)
Q Consensus 200 QmiGRAGR~g~d~~G~aiil~~ 221 (1034)
||+|||||.|||..|.++.|--
T Consensus 1025 QmaGRAGRRGFD~lGnV~Fmgi 1046 (1330)
T KOG0949|consen 1025 QMAGRAGRRGFDTLGNVVFMGI 1046 (1330)
T ss_pred hhhccccccccccccceEEEeC
Confidence 9999999999999999998753
No 60
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=1.5e-16 Score=179.66 Aligned_cols=141 Identities=17% Similarity=0.238 Sum_probs=108.3
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhh-hhhcceEEccCCCCHHHHH
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQS-YILYGVGYHNGGLCLKDRN 144 (1034)
Q Consensus 66 ~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~-~l~~GV~~hH~gLs~~dR~ 144 (1034)
....++|||++++..++.-+..+.+........ ......+..+.. ++...+.-+||+|++++|.
T Consensus 423 ~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~---------------~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRt 487 (708)
T KOG0348|consen 423 EEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG---------------SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERT 487 (708)
T ss_pred hhhceeEEEEechhHHHHHHHHHHhhhhccccc---------------ccCCcccCCChhhhhcceEEEecCchhHHHHH
Confidence 345689999999999998888776543221000 000001112222 2334478899999999999
Q ss_pred HHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 145 LIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 145 ~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
.+++.|+...-.||+|||++|||+|+|.+.+||.|+ .|.+..+|+||+||++|.| ..|.++++..+.+
T Consensus 488 s~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd----------~P~s~adylHRvGRTARaG--~kG~alLfL~P~E 555 (708)
T KOG0348|consen 488 SVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYD----------PPFSTADYLHRVGRTARAG--EKGEALLFLLPSE 555 (708)
T ss_pred HHHHhhccccceEEEehhhhhccCCCCCcCeEEEeC----------CCCCHHHHHHHhhhhhhcc--CCCceEEEecccH
Confidence 999999988888999999999999999999999977 6889999999999999998 8999998887777
Q ss_pred HHHHHHHhcC
Q 001668 225 VHLYENLLNG 234 (1034)
Q Consensus 225 ~~~y~~ll~~ 234 (1034)
.+ |.+++..
T Consensus 556 ae-y~~~l~~ 564 (708)
T KOG0348|consen 556 AE-YVNYLKK 564 (708)
T ss_pred HH-HHHHHHh
Confidence 66 5555554
No 61
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.66 E-value=7.9e-16 Score=189.25 Aligned_cols=286 Identities=16% Similarity=0.188 Sum_probs=194.2
Q ss_pred hhhhhcCCCCCcEEEEccCccCHHHHHHHhCC-CCC----cEEeccccceecc-----hHHHHHHHHHh--hcCCCcEEE
Q 001668 6 PEMKSSSLASVRFLAVSATIPNIEDIAEWLNV-PVQ----GIKRFGEEMRPVK-----LTTKVFDILMQ--YSRGKSALV 73 (1034)
Q Consensus 6 ~~L~~~~~~~~riI~lSATlpn~~dla~wL~~-~~~----~i~~f~~~~Rpv~-----L~~~v~~~l~~--~~~~~~~LV 73 (1034)
.++....+.++++|.+|||+ |.++++++|+. +.. ..|-+...|++.+ +...+...+.. ....+.+||
T Consensus 186 k~~~~~rr~DLKiIimSATl-d~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILv 264 (845)
T COG1643 186 KDLLARRRDDLKLIIMSATL-DAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILV 264 (845)
T ss_pred HHHHhhcCCCceEEEEeccc-CHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEE
Confidence 34444445579999999999 68999999984 321 1111222233322 22222223322 234689999
Q ss_pred EcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcC
Q 001668 74 FCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG 153 (1034)
Q Consensus 74 Fv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G 153 (1034)
|.+..++.+.+++.|... ..+ . ..-|.++||.|+.++...|++--..|
T Consensus 265 FLpG~~EI~~~~~~L~~~--~l~---~---------------------------~~~i~PLy~~L~~~eQ~rvF~p~~~~ 312 (845)
T COG1643 265 FLPGQREIERTAEWLEKA--ELG---D---------------------------DLEILPLYGALSAEEQVRVFEPAPGG 312 (845)
T ss_pred ECCcHHHHHHHHHHHHhc--ccc---C---------------------------CcEEeeccccCCHHHHHhhcCCCCCC
Confidence 999999999999999761 111 0 11288999999999999999999899
Q ss_pred CcceEEeccccccccCCCCeEEEEecc----ccccCCCCc----cccCCHHHHHHhccccCCCCCCCccEEEEEeccccH
Q 001668 154 DVQVLCTTNTLAHGINLPAHTVVIKST----QYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV 225 (1034)
Q Consensus 154 ~ikVLVaT~tLa~GVNLPav~vVI~~t----~~y~~~~~~----~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~ 225 (1034)
..+|++||++++.+|.+|++++||... .+|++..|. ..|+|..+..||.|||||-+ .|.||=+..++
T Consensus 313 ~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~-- 387 (845)
T COG1643 313 KRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEE-- 387 (845)
T ss_pred cceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHH--
Confidence 888999999999999999999999885 468877664 36789999999999999985 99999555432
Q ss_pred HHHHHHhcCccc--ccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHH
Q 001668 226 HLYENLLNGCEM--VESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEV 303 (1034)
Q Consensus 226 ~~y~~ll~~~~p--ieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l 303 (1034)
.|..+.....| ..+.|...+.+ --..| +. .+|..+ ..++..-..-
T Consensus 388 -~~~~~~~~t~PEIlrtdLs~~vL~----l~~~G-~~-------------------~d~~~f--------~fld~P~~~~ 434 (845)
T COG1643 388 -DFLAFPEFTLPEILRTDLSGLVLQ----LKSLG-IG-------------------QDIAPF--------PFLDPPPEAA 434 (845)
T ss_pred -HHHhcccCCChhhhhcchHHHHHH----HHhcC-CC-------------------CCcccC--------ccCCCCChHH
Confidence 24445444333 22222211100 00001 00 122221 2233333444
Q ss_pred HHHHHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCCCChHHHHHHhhcc
Q 001668 304 CVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHA 367 (1034)
Q Consensus 304 ~~~~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~~s~~~iL~iLs~S 367 (1034)
+..++..|...|++ |.++ ..|.+|+.||.+.+++.-++++......-+..+++.+.|.-
T Consensus 435 i~~A~~~L~~LGAl--d~~g---~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~L 493 (845)
T COG1643 435 IQAALTLLQELGAL--DDSG---KLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASML 493 (845)
T ss_pred HHHHHHHHHHcCCc--CCCC---CCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhh
Confidence 55788899999999 6555 47999999999999999999998866666777776666553
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.66 E-value=8e-16 Score=177.16 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=91.7
Q ss_pred HHhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHH
Q 001668 62 LMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLK 141 (1034)
Q Consensus 62 l~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~ 141 (1034)
+.....++++||||+|++.|+.++..|.+... ...+..+||++++.
T Consensus 216 ~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~----------------------------------~~~~~~~h~~~~~~ 261 (358)
T TIGR01587 216 LEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP----------------------------------EEEIMLLHSRFTEK 261 (358)
T ss_pred HHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC----------------------------------CCeEEEEECCCCHH
Confidence 33445678999999999999999999876421 11388999999999
Q ss_pred HHHHH----HHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCC--CccE
Q 001668 142 DRNLI----EGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFN--DTGT 215 (1034)
Q Consensus 142 dR~~v----e~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d--~~G~ 215 (1034)
+|..+ ++.|++|..+|||||+++++|||+|. .+||++ +.+...|+||+||+||.|.. ..|.
T Consensus 262 ~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~-~~vi~~------------~~~~~~~iqr~GR~gR~g~~~~~~~~ 328 (358)
T TIGR01587 262 DRAKKEAELLEEMKKNEKFVIVATQVIEASLDISA-DVMITE------------LAPIDSLIQRLGRLHRYGRKNGENFE 328 (358)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEECcchhceeccCC-CEEEEc------------CCCHHHHHHHhccccCCCCCCCCCCe
Confidence 99764 78899999999999999999999985 455542 23578999999999998743 2357
Q ss_pred EEEEecccc
Q 001668 216 VIIMTRRET 224 (1034)
Q Consensus 216 aiil~~~~~ 224 (1034)
++++....+
T Consensus 329 ~~v~~~~~~ 337 (358)
T TIGR01587 329 VYIITIAPE 337 (358)
T ss_pred EEEEeecCC
Confidence 888876543
No 63
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.65 E-value=9.9e-16 Score=192.82 Aligned_cols=165 Identities=19% Similarity=0.258 Sum_probs=118.0
Q ss_pred CCCCcEEEEccCccCHHHHHHHh-CCCCCcEEeccc-cceecch------HHHHHHHH-HhhcCCCcEEEEcCCHHHHHH
Q 001668 13 LASVRFLAVSATIPNIEDIAEWL-NVPVQGIKRFGE-EMRPVKL------TTKVFDIL-MQYSRGKSALVFCSTRKGAQE 83 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL-~~~~~~i~~f~~-~~Rpv~L------~~~v~~~l-~~~~~~~~~LVFv~sRk~~e~ 83 (1034)
..++|+++||||.. .+.++..+ +.....+....+ ...|+.. ...+...+ .....+++++|||++++.++.
T Consensus 597 ~~~~~vL~~SATpi-prtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~ 675 (926)
T TIGR00580 597 RTSVDVLTLSATPI-PRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEK 675 (926)
T ss_pred CCCCCEEEEecCCC-HHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHH
Confidence 46799999999943 34443322 322111111111 1112110 11122222 345678999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEeccc
Q 001668 84 AAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNT 163 (1034)
Q Consensus 84 lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~t 163 (1034)
++..|.+... ...|+.+||+|++.+|..+++.|++|+++|||||++
T Consensus 676 l~~~L~~~~p----------------------------------~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~i 721 (926)
T TIGR00580 676 LATQLRELVP----------------------------------EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTI 721 (926)
T ss_pred HHHHHHHhCC----------------------------------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECCh
Confidence 9988865421 123899999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccc
Q 001668 164 LAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223 (1034)
Q Consensus 164 La~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~ 223 (1034)
+++|||+|++++||.+. .+ ..+..+|+||+||+||.| ..|.||+++...
T Consensus 722 ie~GIDIp~v~~VIi~~----a~-----~~gls~l~Qr~GRvGR~g--~~g~aill~~~~ 770 (926)
T TIGR00580 722 IETGIDIPNANTIIIER----AD-----KFGLAQLYQLRGRVGRSK--KKAYAYLLYPHQ 770 (926)
T ss_pred hhcccccccCCEEEEec----CC-----CCCHHHHHHHhcCCCCCC--CCeEEEEEECCc
Confidence 99999999999998644 21 245778999999999987 899999887653
No 64
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.65 E-value=1.1e-15 Score=196.12 Aligned_cols=166 Identities=20% Similarity=0.201 Sum_probs=119.2
Q ss_pred CCCCCcEEEEccCcc-CHHHHHHHhCCCCCcEEeccccc-eecch------HHHH-HHHHHhhcCCCcEEEEcCCHHHHH
Q 001668 12 SLASVRFLAVSATIP-NIEDIAEWLNVPVQGIKRFGEEM-RPVKL------TTKV-FDILMQYSRGKSALVFCSTRKGAQ 82 (1034)
Q Consensus 12 ~~~~~riI~lSATlp-n~~dla~wL~~~~~~i~~f~~~~-Rpv~L------~~~v-~~~l~~~~~~~~~LVFv~sRk~~e 82 (1034)
...++|+++||||.. ....++.....+...+ ...+.. .++.. ...+ ...+.....+++++||||+++.++
T Consensus 745 l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I-~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie 823 (1147)
T PRK10689 745 MRADVDILTLTATPIPRTLNMAMSGMRDLSII-ATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQ 823 (1147)
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEE-ecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHH
Confidence 356899999999954 4444443322222212 111111 11110 0011 223345567889999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEecc
Q 001668 83 EAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTN 162 (1034)
Q Consensus 83 ~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~ 162 (1034)
.+++.|.+... ..+|+.+||+|++.+|..++..|++|+++|||||+
T Consensus 824 ~la~~L~~~~p----------------------------------~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd 869 (1147)
T PRK10689 824 KAAERLAELVP----------------------------------EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 (1147)
T ss_pred HHHHHHHHhCC----------------------------------CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc
Confidence 99988875421 12488999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccc
Q 001668 163 TLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223 (1034)
Q Consensus 163 tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~ 223 (1034)
++++|||+|++++||... + ..++..+|+||+||+||.| ..|.|++++...
T Consensus 870 IierGIDIP~v~~VIi~~----a-----d~fglaq~~Qr~GRvGR~g--~~g~a~ll~~~~ 919 (1147)
T PRK10689 870 IIETGIDIPTANTIIIER----A-----DHFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 919 (1147)
T ss_pred hhhcccccccCCEEEEec----C-----CCCCHHHHHHHhhccCCCC--CceEEEEEeCCC
Confidence 999999999999988432 1 1246788999999999987 899999998653
No 65
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=6e-16 Score=178.08 Aligned_cols=166 Identities=22% Similarity=0.305 Sum_probs=122.9
Q ss_pred CCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecc---hHHHH---------HHHHHh---hcCCCcEEEEcCCH
Q 001668 14 ASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVK---LTTKV---------FDILMQ---YSRGKSALVFCSTR 78 (1034)
Q Consensus 14 ~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~---L~~~v---------~~~l~~---~~~~~~~LVFv~sR 78 (1034)
+.+++-+||||++ ..+.+|.......+.......++.. +.+.. +..+++ ..-..|+|||+-+.
T Consensus 320 ~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~ 397 (593)
T KOG0344|consen 320 PDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSK 397 (593)
T ss_pred cchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecH
Confidence 6788899999988 3444454433322222222333221 11221 222222 22357899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceE
Q 001668 79 KGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL 158 (1034)
Q Consensus 79 k~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVL 158 (1034)
..|..+...|... . .-.|+++||..++.+|..+++.||.|.|.||
T Consensus 398 eRak~L~~~L~~~----~-------------------------------~i~v~vIh~e~~~~qrde~~~~FR~g~IwvL 442 (593)
T KOG0344|consen 398 ERAKQLFEELEIY----D-------------------------------NINVDVIHGERSQKQRDETMERFRIGKIWVL 442 (593)
T ss_pred HHHHHHHHHhhhc----c-------------------------------CcceeeEecccchhHHHHHHHHHhccCeeEE
Confidence 9998888777411 0 1128999999999999999999999999999
Q ss_pred EeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHH
Q 001668 159 CTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLY 228 (1034)
Q Consensus 159 VaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y 228 (1034)
+||++++||+|+-+++.||+|+ .|-+...|+||+||+||+| +.|.||.+...++..+.
T Consensus 443 icTdll~RGiDf~gvn~VInyD----------~p~s~~syihrIGRtgRag--~~g~Aitfytd~d~~~i 500 (593)
T KOG0344|consen 443 ICTDLLARGIDFKGVNLVINYD----------FPQSDLSYIHRIGRTGRAG--RSGKAITFYTDQDMPRI 500 (593)
T ss_pred EehhhhhccccccCcceEEecC----------CCchhHHHHHHhhccCCCC--CCcceEEEeccccchhh
Confidence 9999999999999999999977 7889999999999999998 99999988777665443
No 66
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=7.1e-16 Score=173.45 Aligned_cols=175 Identities=22% Similarity=0.319 Sum_probs=132.2
Q ss_pred CCCCcEEEEccCccC-HHHHHHHh-CCCCCcEEecc----ccc--------eecchHH-----HHHHHHHhhcCCCcEEE
Q 001668 13 LASVRFLAVSATIPN-IEDIAEWL-NVPVQGIKRFG----EEM--------RPVKLTT-----KVFDILMQYSRGKSALV 73 (1034)
Q Consensus 13 ~~~~riI~lSATlpn-~~dla~wL-~~~~~~i~~f~----~~~--------Rpv~L~~-----~v~~~l~~~~~~~~~LV 73 (1034)
.++++.+.+|||+.. +..+..+- +.| .++... ..| ++|-... .+|..+ ...+..++|+
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~P--rl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI-~~~k~~r~lc 434 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIP--RLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALI-TSNKLNRTLC 434 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCC--ceEEeecccceeeecChhhhhceeecccccchHhHHHHH-HHhhcceEEE
Confidence 456778999999984 77776643 222 121111 111 1111111 113333 4456789999
Q ss_pred EcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcC
Q 001668 74 FCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG 153 (1034)
Q Consensus 74 Fv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G 153 (1034)
|+++...+.+++..|.-.+.... ..+..+.|+|+.+.|....+.|+.|
T Consensus 435 f~~S~~sa~Rl~~~L~v~~~~~~--------------------------------~~~s~~t~~l~~k~r~k~l~~f~~g 482 (620)
T KOG0350|consen 435 FVNSVSSANRLAHVLKVEFCSDN--------------------------------FKVSEFTGQLNGKRRYKMLEKFAKG 482 (620)
T ss_pred EecchHHHHHHHHHHHHHhcccc--------------------------------chhhhhhhhhhHHHHHHHHHHHhcC
Confidence 99999999999998874332211 1144578999999999999999999
Q ss_pred CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHhc
Q 001668 154 DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLN 233 (1034)
Q Consensus 154 ~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll~ 233 (1034)
.|+|||||+++|||+|+-+++.||+|+ .|.+...|+||+||+||+| ..|.|+.+....+...|.++++
T Consensus 483 ~i~vLIcSD~laRGiDv~~v~~VINYd----------~P~~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 483 DINVLICSDALARGIDVNDVDNVINYD----------PPASDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred CceEEEehhhhhcCCcccccceEeecC----------CCchhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHH
Confidence 999999999999999999999999977 7899999999999999998 8999998888888888888876
Q ss_pred C
Q 001668 234 G 234 (1034)
Q Consensus 234 ~ 234 (1034)
.
T Consensus 551 ~ 551 (620)
T KOG0350|consen 551 K 551 (620)
T ss_pred H
Confidence 5
No 67
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8.9e-16 Score=169.08 Aligned_cols=176 Identities=23% Similarity=0.390 Sum_probs=133.4
Q ss_pred hhhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCC------------cEEeccccceecchHHHHHHHHHhhcCCCcEEE
Q 001668 7 EMKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQ------------GIKRFGEEMRPVKLTTKVFDILMQYSRGKSALV 73 (1034)
Q Consensus 7 ~L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~------------~i~~f~~~~Rpv~L~~~v~~~l~~~~~~~~~LV 73 (1034)
.+....+.++|++++|||+|. +.++++-+...+. ++..|.....+-+.-.-+++... .-.+++|
T Consensus 192 ~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~---~~~q~~i 268 (397)
T KOG0327|consen 192 DIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR---RVTQAVI 268 (397)
T ss_pred HHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH---hhhcceE
Confidence 344556778999999999996 7788764443332 22223222222110000112222 5678999
Q ss_pred EcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcC
Q 001668 74 FCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG 153 (1034)
Q Consensus 74 Fv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G 153 (1034)
|||||+.+..+...|... +. -+...||.|.+.+|..+.+.|+.|
T Consensus 269 f~nt~r~v~~l~~~L~~~----~~--------------------------------~~s~~~~d~~q~~R~~~~~ef~~g 312 (397)
T KOG0327|consen 269 FCNTRRKVDNLTDKLRAH----GF--------------------------------TVSAIHGDMEQNERDTLMREFRSG 312 (397)
T ss_pred EecchhhHHHHHHHHhhC----Cc--------------------------------eEEEeecccchhhhhHHHHHhhcC
Confidence 999999999998888433 22 278899999999999999999999
Q ss_pred CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHhc
Q 001668 154 DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLN 233 (1034)
Q Consensus 154 ~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll~ 233 (1034)
..+|||.|+.+|||+|+-.+..||++. .|-....|+||+||+||.| ..|.++-++...+....+++.+
T Consensus 313 ssrvlIttdl~argidv~~~slvinyd----------lP~~~~~yihR~gr~gr~g--rkg~~in~v~~~d~~~lk~ie~ 380 (397)
T KOG0327|consen 313 SSRVLITTDLLARGIDVQQVSLVVNYD----------LPARKENYIHRIGRAGRFG--RKGVAINFVTEEDVRDLKDIEK 380 (397)
T ss_pred CceEEeeccccccccchhhcceeeeec----------cccchhhhhhhcccccccC--CCceeeeeehHhhHHHHHhHHH
Confidence 999999999999999999999999987 7888999999999999987 9999998888777665555443
No 68
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=5.9e-16 Score=173.70 Aligned_cols=175 Identities=21% Similarity=0.263 Sum_probs=135.1
Q ss_pred ChhhhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEeccccce---------ecchHHHHH----HHHHhhcCCCc
Q 001668 5 NPEMKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMR---------PVKLTTKVF----DILMQYSRGKS 70 (1034)
Q Consensus 5 l~~L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~R---------pv~L~~~v~----~~l~~~~~~~~ 70 (1034)
.+.++.+.+++.|+++||||++. ++.+|+-+-..+..+........ -++-...-+ ..|......++
T Consensus 391 VrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gk 470 (731)
T KOG0339|consen 391 VRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGK 470 (731)
T ss_pred HHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCc
Confidence 45567778899999999999995 88888755444444332221111 111111112 33344556789
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHh
Q 001668 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF 150 (1034)
Q Consensus 71 ~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F 150 (1034)
+||||..+..++.++..|... .+.|+.+||.+.+.+|..++..|
T Consensus 471 vlifVTKk~~~e~i~a~Lklk------------------------------------~~~v~llhgdkdqa~rn~~ls~f 514 (731)
T KOG0339|consen 471 VLIFVTKKADAEEIAANLKLK------------------------------------GFNVSLLHGDKDQAERNEVLSKF 514 (731)
T ss_pred EEEEEeccCCHHHHHHHhccc------------------------------------cceeeeecCchhhHHHHHHHHHH
Confidence 999999999999998887643 22388999999999999999999
Q ss_pred hcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHH
Q 001668 151 LKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227 (1034)
Q Consensus 151 ~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~ 227 (1034)
+.+...|||+|++++||+|+|.+..||+++ +-.++..+.||+||+||+| ..|.++.+..+.+..+
T Consensus 515 Kkk~~~VlvatDvaargldI~~ikTVvnyD----------~ardIdththrigrtgRag--~kGvayTlvTeKDa~f 579 (731)
T KOG0339|consen 515 KKKRKPVLVATDVAARGLDIPSIKTVVNYD----------FARDIDTHTHRIGRTGRAG--EKGVAYTLVTEKDAEF 579 (731)
T ss_pred hhcCCceEEEeeHhhcCCCccccceeeccc----------ccchhHHHHHHhhhccccc--ccceeeEEechhhHHH
Confidence 999999999999999999999999999987 4568999999999999998 6799998777666543
No 69
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.64 E-value=2.5e-15 Score=186.14 Aligned_cols=82 Identities=21% Similarity=0.458 Sum_probs=73.6
Q ss_pred cceEEccCCCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCC
Q 001668 129 YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRP 208 (1034)
Q Consensus 129 ~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~ 208 (1034)
..|+.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||.++ ++ ....++|.||+||+||.
T Consensus 506 ~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~----~~-----r~gls~lhQ~~GRvGR~ 576 (681)
T PRK10917 506 LRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIEN----AE-----RFGLAQLHQLRGRVGRG 576 (681)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeC----CC-----CCCHHHHHHHhhcccCC
Confidence 4599999999999999999999999999999999999999999999999754 22 13578899999999998
Q ss_pred CCCCccEEEEEec
Q 001668 209 PFNDTGTVIIMTR 221 (1034)
Q Consensus 209 g~d~~G~aiil~~ 221 (1034)
| ..|.|++++.
T Consensus 577 g--~~g~~ill~~ 587 (681)
T PRK10917 577 A--AQSYCVLLYK 587 (681)
T ss_pred C--CceEEEEEEC
Confidence 7 7899999985
No 70
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.63 E-value=3.7e-15 Score=183.46 Aligned_cols=82 Identities=24% Similarity=0.485 Sum_probs=73.6
Q ss_pred cceEEccCCCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCC
Q 001668 129 YGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRP 208 (1034)
Q Consensus 129 ~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~ 208 (1034)
..|+.+||+|++++|..+++.|++|.++|||||+++++|||+|++++||.++ ++ ..+..+|.||+|||||.
T Consensus 483 ~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~----~~-----r~gls~lhQ~~GRvGR~ 553 (630)
T TIGR00643 483 YNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIED----AE-----RFGLSQLHQLRGRVGRG 553 (630)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeC----CC-----cCCHHHHHHHhhhcccC
Confidence 4599999999999999999999999999999999999999999999999744 22 24678999999999998
Q ss_pred CCCCccEEEEEec
Q 001668 209 PFNDTGTVIIMTR 221 (1034)
Q Consensus 209 g~d~~G~aiil~~ 221 (1034)
| ..|.|++++.
T Consensus 554 g--~~g~~il~~~ 564 (630)
T TIGR00643 554 D--HQSYCLLVYK 564 (630)
T ss_pred C--CCcEEEEEEC
Confidence 7 8999999984
No 71
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.63 E-value=1.1e-15 Score=175.52 Aligned_cols=168 Identities=25% Similarity=0.322 Sum_probs=128.0
Q ss_pred hhcCCCCCcEEEEccCcc-C-HHHHHHHhCCCCC-----------cEEeccccceecchHHHH-------HHHHHhhcCC
Q 001668 9 KSSSLASVRFLAVSATIP-N-IEDIAEWLNVPVQ-----------GIKRFGEEMRPVKLTTKV-------FDILMQYSRG 68 (1034)
Q Consensus 9 ~~~~~~~~riI~lSATlp-n-~~dla~wL~~~~~-----------~i~~f~~~~Rpv~L~~~v-------~~~l~~~~~~ 68 (1034)
-+..+...|++++|||.| | .+.++++++.+.- +|..|.......++.... +..+....+-
T Consensus 193 i~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy 272 (980)
T KOG4284|consen 193 INSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPY 272 (980)
T ss_pred HHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCch
Confidence 344566899999999999 4 5667888865420 122222111111222222 2223333456
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHH
Q 001668 69 KSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEG 148 (1034)
Q Consensus 69 ~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~ 148 (1034)
.++||||+....|+.+|..|... |.. +-++.|.|++.+|..+++
T Consensus 273 ~QAlVF~~~~sra~~~a~~L~ss----G~d--------------------------------~~~ISgaM~Q~~Rl~a~~ 316 (980)
T KOG4284|consen 273 VQALVFCDQISRAEPIATHLKSS----GLD--------------------------------VTFISGAMSQKDRLLAVD 316 (980)
T ss_pred HHHHhhhhhhhhhhHHHHHhhcc----CCC--------------------------------eEEeccccchhHHHHHHH
Confidence 78999999999999999988654 322 778899999999999999
Q ss_pred HhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 149 LFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 149 ~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
.+|.-..+|||+|+..|||||-|.+.+|||-+ .|.+-.+|+||+|||||.| ..|.++.++..+.
T Consensus 317 ~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD----------~p~d~eTY~HRIGRAgRFG--~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 317 QLRAFRVRILVSTDLTARGIDADNVNLVVNID----------APADEETYFHRIGRAGRFG--AHGAAVTLLEDER 380 (980)
T ss_pred HhhhceEEEEEecchhhccCCccccceEEecC----------CCcchHHHHHHhhhccccc--ccceeEEEeccch
Confidence 99999999999999999999999999999977 7889999999999999977 8999997765544
No 72
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.60 E-value=4.5e-15 Score=184.75 Aligned_cols=182 Identities=19% Similarity=0.293 Sum_probs=144.6
Q ss_pred ChhhhhcCCCCCcEEEEccCccC--HHHHHHHhCCCCCcEEecc-------ccceecchHHHH---HHHHHhhcCCCcEE
Q 001668 5 NPEMKSSSLASVRFLAVSATIPN--IEDIAEWLNVPVQGIKRFG-------EEMRPVKLTTKV---FDILMQYSRGKSAL 72 (1034)
Q Consensus 5 l~~L~~~~~~~~riI~lSATlpn--~~dla~wL~~~~~~i~~f~-------~~~Rpv~L~~~v---~~~l~~~~~~~~~L 72 (1034)
+..|+.... .+.+|+|+||..- .+||++-|+.....++.-. -+++|-...... ...+.....+.+.|
T Consensus 411 l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~I 489 (941)
T KOG0351|consen 411 LGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGI 489 (941)
T ss_pred HHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeE
Confidence 344444443 3899999999974 7899999998765543211 112222211122 33445566788999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhc
Q 001668 73 VFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLK 152 (1034)
Q Consensus 73 VFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~ 152 (1034)
|||.+|++|+.++..|...+ ...++|||||+..+|..|.+.|..
T Consensus 490 IYC~sr~~ce~vs~~L~~~~------------------------------------~~a~~YHAGl~~~~R~~Vq~~w~~ 533 (941)
T KOG0351|consen 490 IYCLSRKECEQVSAVLRSLG------------------------------------KSAAFYHAGLPPKERETVQKAWMS 533 (941)
T ss_pred EEeCCcchHHHHHHHHHHhc------------------------------------hhhHhhhcCCCHHHHHHHHHHHhc
Confidence 99999999999999998752 126789999999999999999999
Q ss_pred CCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHHHHh
Q 001668 153 GDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLL 232 (1034)
Q Consensus 153 G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~~ll 232 (1034)
++++|+|||=.++||||-|+|+.||++. .|.+...|.|-+|||||.| ....|+++....+....+.++
T Consensus 534 ~~~~VivATVAFGMGIdK~DVR~ViH~~----------lPks~E~YYQE~GRAGRDG--~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 534 DKIRVIVATVAFGMGIDKPDVRFVIHYS----------LPKSFEGYYQEAGRAGRDG--LPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred CCCeEEEEEeeccCCCCCCceeEEEECC----------CchhHHHHHHhccccCcCC--CcceeEEecchhHHHHHHHHH
Confidence 9999999999999999999999999977 8999999999999999998 788999998888877777777
Q ss_pred cCc
Q 001668 233 NGC 235 (1034)
Q Consensus 233 ~~~ 235 (1034)
...
T Consensus 602 ~s~ 604 (941)
T KOG0351|consen 602 TSG 604 (941)
T ss_pred Hcc
Confidence 654
No 73
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.60 E-value=4.4e-15 Score=168.49 Aligned_cols=158 Identities=19% Similarity=0.271 Sum_probs=127.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
.+.+|||||+...+.+++-.|... +. --..+||.|.+++|...+
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L----~i--------------------------------~p~~LHA~M~QKqRLknL 506 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNL----DI--------------------------------PPLPLHASMIQKQRLKNL 506 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhc----CC--------------------------------CCchhhHHHHHHHHHHhH
Confidence 578999999999999988887543 11 134589999999999999
Q ss_pred HHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHH
Q 001668 148 GLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227 (1034)
Q Consensus 148 ~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~ 227 (1034)
+.|++..-.|||||+++|||+|||.+.+||+|. +|.+..-|+||.||++|++ ..|..+++|.+.+...
T Consensus 507 EkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYq----------VPrtseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 507 EKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQ----------VPRTSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHhcCCCeEEEeehhhhccCCCCCcceEEEee----------cCCccceeEeccccccccc--CCCeEEEEeChHHhHH
Confidence 999999999999999999999999999999977 8999999999999999997 8999999999988777
Q ss_pred HHHHhcC--------cccccchhhhhhhh--hhHHHHHhcccCCHHHHH--HHHHHhh
Q 001668 228 YENLLNG--------CEMVESQLLSCVTE--HLTAEIVQMTVSDITQAI--EWMKCSY 273 (1034)
Q Consensus 228 y~~ll~~--------~~pieS~L~~~L~d--~l~aEI~~g~i~~~~~ai--dwl~~Tf 273 (1034)
|.++... -.||+..++..+.+ .|..+|....+.+..-.. .||+..-
T Consensus 575 ~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~e~k~~~v~~~~sWlkkaA 632 (731)
T KOG0347|consen 575 LKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDKLEIKSKRVRKEESWLKKAA 632 (731)
T ss_pred HHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 7766543 36777777766654 356677666665544332 5876543
No 74
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.55 E-value=4.4e-14 Score=173.72 Aligned_cols=145 Identities=21% Similarity=0.208 Sum_probs=102.0
Q ss_pred CCcEEEEccCccC-HHHHHHHhCCCCCcEEecc--------ccceecchHHHH---HHHHH--hhcCCCcEEEEcCCHHH
Q 001668 15 SVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFG--------EEMRPVKLTTKV---FDILM--QYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 15 ~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~--------~~~Rpv~L~~~v---~~~l~--~~~~~~~~LVFv~sRk~ 80 (1034)
++|+++||||++. ..+++..+..++..+-... ..+.+++-..++ +..+. ....++++||||||++.
T Consensus 205 prQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~ 284 (844)
T TIGR02621 205 PLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKH 284 (844)
T ss_pred cceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHH
Confidence 3799999999995 6677766643322111110 011222222111 11111 12356899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHH-----HHHHHhhc---
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRN-----LIEGLFLK--- 152 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~-----~ve~~F~~--- 152 (1034)
|+.+++.|.+. |+..+||+|++.+|. .+++.|++
T Consensus 285 Aq~L~~~L~~~--------------------------------------g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~ 326 (844)
T TIGR02621 285 VRKVFAKLPKE--------------------------------------KFELLTGTLRGAERDDLVKKEIFNRFLPQML 326 (844)
T ss_pred HHHHHHHHHhc--------------------------------------CCeEeeCCCCHHHHhhHHHHHHHHHHhcccc
Confidence 99999988642 246789999999999 88899987
Q ss_pred -CC-------cceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCC
Q 001668 153 -GD-------VQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPF 210 (1034)
Q Consensus 153 -G~-------ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~ 210 (1034)
|. .+|||||+++++|||++. .+||++. .+...|+||+||+||.|.
T Consensus 327 ~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~------------aP~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 327 SGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDL------------APFESMQQRFGRVNRFGE 379 (844)
T ss_pred ccccccccccceEEeccchhhhcccCCc-ceEEECC------------CCHHHHHHHhcccCCCCC
Confidence 54 789999999999999998 5666533 246899999999999983
No 75
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=1.4e-13 Score=165.97 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=113.5
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEecc-------ccceecchHHHH---HHHHHh-hcCCCcEEEEcCCHHHHHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFG-------EEMRPVKLTTKV---FDILMQ-YSRGKSALVFCSTRKGAQEA 84 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~-------~~~Rpv~L~~~v---~~~l~~-~~~~~~~LVFv~sRk~~e~l 84 (1034)
++.|||||++. .+++.++++.++..|-... +.+--+.-..+. ...+.. ...++|+||||+|++.++.+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L 489 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERL 489 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH
Confidence 67899999997 6789999987642221111 111111212222 222222 23478999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEecccc
Q 001668 85 AQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTL 164 (1034)
Q Consensus 85 A~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tL 164 (1034)
+..|... |.. +..+||.+...++..+..++ +..+|+|||+++
T Consensus 490 ~~~L~~~----gi~--------------------------------~~~Lhg~~~~rE~~ii~~ag--~~g~VlVATdmA 531 (656)
T PRK12898 490 SALLREA----GLP--------------------------------HQVLNAKQDAEEAAIVARAG--QRGRITVATNMA 531 (656)
T ss_pred HHHHHHC----CCC--------------------------------EEEeeCCcHHHHHHHHHHcC--CCCcEEEEccch
Confidence 9999764 222 77899997766666555544 445799999999
Q ss_pred ccccCCC---CeE-----EEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 165 AHGINLP---AHT-----VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 165 a~GVNLP---av~-----vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
+||+||+ .+. +||++. .|.+...|.||+|||||.| ..|.++.+...++
T Consensus 532 gRGtDI~l~~~V~~~GGLhVI~~d----------~P~s~r~y~hr~GRTGRqG--~~G~s~~~is~eD 587 (656)
T PRK12898 532 GRGTDIKLEPGVAARGGLHVILTE----------RHDSARIDRQLAGRCGRQG--DPGSYEAILSLED 587 (656)
T ss_pred hcccCcCCccchhhcCCCEEEEcC----------CCCCHHHHHHhcccccCCC--CCeEEEEEechhH
Confidence 9999999 665 899866 7889999999999999998 8899998776544
No 76
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.51 E-value=7.4e-14 Score=170.06 Aligned_cols=169 Identities=19% Similarity=0.301 Sum_probs=132.1
Q ss_pred hhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEe---------ccccceecc-hHHHH---HHHHHhhcCCCcEEE
Q 001668 8 MKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKR---------FGEEMRPVK-LTTKV---FDILMQYSRGKSALV 73 (1034)
Q Consensus 8 L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~---------f~~~~Rpv~-L~~~v---~~~l~~~~~~~~~LV 73 (1034)
+....++..|+|++|||+|. ...+|.-+.-.|..+.. +...++-++ ..+++ ...|.......++||
T Consensus 539 Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tii 618 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTII 618 (997)
T ss_pred HHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEE
Confidence 56666889999999999997 77888755444433221 112234445 23333 233445566899999
Q ss_pred EcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcC
Q 001668 74 FCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG 153 (1034)
Q Consensus 74 Fv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G 153 (1034)
||.....|..+.+.|... |+. +..+|||.++.+|..+++.|++|
T Consensus 619 Fv~~qe~~d~l~~~L~~a----g~~--------------------------------~~slHGgv~q~dR~sti~dfK~~ 662 (997)
T KOG0334|consen 619 FVDKQEKADALLRDLQKA----GYN--------------------------------CDSLHGGVDQHDRSSTIEDFKNG 662 (997)
T ss_pred EEcCchHHHHHHHHHHhc----Ccc--------------------------------hhhhcCCCchHHHHhHHHHHhcc
Confidence 999999999999888743 322 23389999999999999999999
Q ss_pred CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 154 DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 154 ~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
.+.+||||+.+|+|+|++...+||+|+ .|--..+|+||+|||||+| +.|.|+.|....+
T Consensus 663 ~~~LLvaTsvvarGLdv~~l~Lvvnyd----------~pnh~edyvhR~gRTgrag--rkg~AvtFi~p~q 721 (997)
T KOG0334|consen 663 VVNLLVATSVVARGLDVKELILVVNYD----------FPNHYEDYVHRVGRTGRAG--RKGAAVTFITPDQ 721 (997)
T ss_pred CceEEEehhhhhcccccccceEEEEcc----------cchhHHHHHHHhcccccCC--ccceeEEEeChHH
Confidence 999999999999999999999999977 5666788999999999998 8999998877744
No 77
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.48 E-value=2.3e-13 Score=150.53 Aligned_cols=180 Identities=21% Similarity=0.285 Sum_probs=133.4
Q ss_pred CChhhhhcCCCCCcEEEEccCccC--HHHHHHHhCCCCC-cEEeccccceecch-----HHHH---HHHHH-----hh--
Q 001668 4 CNPEMKSSSLASVRFLAVSATIPN--IEDIAEWLNVPVQ-GIKRFGEEMRPVKL-----TTKV---FDILM-----QY-- 65 (1034)
Q Consensus 4 ~l~~L~~~~~~~~riI~lSATlpn--~~dla~wL~~~~~-~i~~f~~~~Rpv~L-----~~~v---~~~l~-----~~-- 65 (1034)
+|..|++.. .++..|+|+||... -+|++.-|..... .+| -.+.+|.--. +..+ |..+. .+
T Consensus 166 ~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiF-kTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~ 243 (641)
T KOG0352|consen 166 TLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIF-KTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGK 243 (641)
T ss_pred hhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhc-cCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCC
Confidence 456666664 57889999999874 6888888876432 222 1233332110 0001 11111 01
Q ss_pred ----c-----CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccC
Q 001668 66 ----S-----RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNG 136 (1034)
Q Consensus 66 ----~-----~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~ 136 (1034)
. ..+-.||||.||.+|+++|-.|...+ .|...+|+
T Consensus 244 ~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~G------------------------------------i~A~AYHA 287 (641)
T KOG0352|consen 244 HEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAG------------------------------------IPAMAYHA 287 (641)
T ss_pred hhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcC------------------------------------cchHHHhc
Confidence 1 12457999999999999998876432 12456899
Q ss_pred CCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEE
Q 001668 137 GLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTV 216 (1034)
Q Consensus 137 gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~a 216 (1034)
||...+|..|.+.+.+|.+.||+||..++||||-|++++||+++ .+.++.-|.|-.|||||.| ....|
T Consensus 288 GLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~----------~~qn~AgYYQESGRAGRDG--k~SyC 355 (641)
T KOG0352|consen 288 GLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWS----------PSQNLAGYYQESGRAGRDG--KRSYC 355 (641)
T ss_pred ccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecC----------chhhhHHHHHhccccccCC--Cccce
Confidence 99999999999999999999999999999999999999999855 6778999999999999998 78899
Q ss_pred EEEeccccHHHHHHHhc
Q 001668 217 IIMTRRETVHLYENLLN 233 (1034)
Q Consensus 217 iil~~~~~~~~y~~ll~ 233 (1034)
-++...++++...-++.
T Consensus 356 RLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 356 RLYYSRQDKNALNFLVS 372 (641)
T ss_pred eeeecccchHHHHHHHh
Confidence 99998888776654444
No 78
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.47 E-value=2.4e-13 Score=132.30 Aligned_cols=114 Identities=32% Similarity=0.513 Sum_probs=95.4
Q ss_pred HHHHHHhhc-CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccC
Q 001668 58 VFDILMQYS-RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNG 136 (1034)
Q Consensus 58 v~~~l~~~~-~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~ 136 (1034)
+...+.... .++++||||+++..++.+++.|.+. ..++.++||
T Consensus 17 i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~------------------------------------~~~~~~~~~ 60 (131)
T cd00079 17 LLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP------------------------------------GIKVAALHG 60 (131)
T ss_pred HHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc------------------------------------CCcEEEEEC
Confidence 344444332 5789999999999999999888641 234899999
Q ss_pred CCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEE
Q 001668 137 GLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTV 216 (1034)
Q Consensus 137 gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~a 216 (1034)
+++..+|..+.+.|.+|..++|+||..+++|+|+|...+||... .+.+..++.||+||+||.| ..|.+
T Consensus 61 ~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~----------~~~~~~~~~Q~~GR~~R~~--~~~~~ 128 (131)
T cd00079 61 DGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYD----------LPWSPSSYLQRIGRAGRAG--QKGTA 128 (131)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeC----------CCCCHHHheecccccccCC--CCceE
Confidence 99999999999999999999999999999999999888777555 4678999999999999998 57877
Q ss_pred EEE
Q 001668 217 IIM 219 (1034)
Q Consensus 217 iil 219 (1034)
+++
T Consensus 129 ~~~ 131 (131)
T cd00079 129 ILL 131 (131)
T ss_pred EeC
Confidence 653
No 79
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=5.8e-13 Score=163.85 Aligned_cols=154 Identities=21% Similarity=0.277 Sum_probs=115.7
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecch-----------HHHH---HHHHH-hhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKL-----------TTKV---FDILM-QYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L-----------~~~v---~~~l~-~~~~~~~~LVFv~sRk~ 80 (1034)
++.|||.|... .+++.+..+.+. ..+ +..+|+.. ..+. ...+. ....+.|+||||+|++.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l~v---~~I-Pt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNMEV---VQI-PTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCCcE---EEC-CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 46788888764 445655555542 112 33344321 1111 22232 23568999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa 160 (1034)
++.++..|... |. .+..+||.+.+.+|..+..+++.| +|+||
T Consensus 441 se~l~~~L~~~----gi--------------------------------~~~~L~~~~~~~e~~~i~~ag~~g--~VlIA 482 (790)
T PRK09200 441 SETFSKLLDEA----GI--------------------------------PHNLLNAKNAAKEAQIIAEAGQKG--AVTVA 482 (790)
T ss_pred HHHHHHHHHHC----CC--------------------------------CEEEecCCccHHHHHHHHHcCCCC--eEEEE
Confidence 99999988754 22 277899999999999998888877 79999
Q ss_pred ccccccccCC---CCeE-----EEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 161 TNTLAHGINL---PAHT-----VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 161 T~tLa~GVNL---Pav~-----vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
|+.++||+|+ |.+. +||++. .|.+...|.||+|||||.| ..|.++.+...++
T Consensus 483 TdmAgRG~DI~l~~~V~~~GGL~VI~~d----------~p~s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 483 TNMAGRGTDIKLGEGVHELGGLAVIGTE----------RMESRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred ccchhcCcCCCcccccccccCcEEEecc----------CCCCHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 9999999999 7898 999876 7889999999999999998 8999997776543
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.43 E-value=1.1e-12 Score=160.11 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=113.1
Q ss_pred CcEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecch-----------HHHH---HHHHH-hhcCCCcEEEEcCCHH
Q 001668 16 VRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKL-----------TTKV---FDILM-QYSRGKSALVFCSTRK 79 (1034)
Q Consensus 16 ~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L-----------~~~v---~~~l~-~~~~~~~~LVFv~sRk 79 (1034)
.++.||+.|... ..++.+..+.+. ..-+..+|+.. ..++ ...+. .+..+.|+||||+|++
T Consensus 360 ~kl~GmTGTa~~~~~Ef~~iY~l~v----~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 360 NKLSGMTGTGKVAEKEFIETYSLSV----VKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred chhcccCCCChhHHHHHHHHhCCCE----EEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 357899999764 566666666542 11223333221 1121 22222 3467899999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEE
Q 001668 80 GAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLC 159 (1034)
Q Consensus 80 ~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLV 159 (1034)
.++.++..|... |. .+..+||.+.+.+|..+.++++.| +|+|
T Consensus 436 ~se~ls~~L~~~----gi--------------------------------~~~~L~a~~~~~E~~ii~~ag~~g--~VlI 477 (762)
T TIGR03714 436 MSEIYSELLLRE----GI--------------------------------PHNLLNAQNAAKEAQIIAEAGQKG--AVTV 477 (762)
T ss_pred HHHHHHHHHHHC----CC--------------------------------CEEEecCCChHHHHHHHHHcCCCC--eEEE
Confidence 999999988754 22 266789999999999999888888 7999
Q ss_pred eccccccccCCC---------CeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 160 TTNTLAHGINLP---------AHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 160 aT~tLa~GVNLP---------av~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
||+.++||+|+| ++.|||++. .|....+ .||+|||||.| ..|.++.+.+.++
T Consensus 478 ATdmAgRGtDI~l~~~v~~~GGL~vIit~~----------~ps~rid-~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 478 ATSMAGRGTDIKLGKGVAELGGLAVIGTER----------MENSRVD-LQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred EccccccccCCCCCccccccCCeEEEEecC----------CCCcHHH-HHhhhcccCCC--CceeEEEEEccch
Confidence 999999999999 999999855 4444555 99999999998 8999998776544
No 81
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.43 E-value=1.6e-12 Score=146.03 Aligned_cols=279 Identities=16% Similarity=0.194 Sum_probs=177.3
Q ss_pred CCCCcEEEEccCccCHHHHHHHhCCCCCcEEeccc------cceecchHHHHHHH----H--HhhcCCCcEEEEcCCHHH
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGE------EMRPVKLTTKVFDI----L--MQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 13 ~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~------~~Rpv~L~~~v~~~----l--~~~~~~~~~LVFv~sRk~ 80 (1034)
++++++|.+|||+ .+..+..|++..+ +..+.. -|.|.+-..++-.. + ......+.+|||..+..+
T Consensus 189 rpdLk~vvmSatl-~a~Kfq~yf~n~P--ll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeee 265 (699)
T KOG0925|consen 189 RPDLKLVVMSATL-DAEKFQRYFGNAP--LLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEE 265 (699)
T ss_pred CCCceEEEeeccc-chHHHHHHhCCCC--eeecCCCCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHH
Confidence 3689999999998 4778888887543 111111 11122222222111 1 123446889999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhh---cC--Cc
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFL---KG--DV 155 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~---~G--~i 155 (1034)
.+..++.+...+...+... ....|.++| +.+...+++... +| ..
T Consensus 266 Ie~aC~~i~re~~~L~~~~---------------------------g~l~v~PLy----P~~qq~iFep~p~~~~~~~~R 314 (699)
T KOG0925|consen 266 IEDACRKISREVDNLGPQV---------------------------GPLKVVPLY----PAQQQRIFEPAPEKRNGAYGR 314 (699)
T ss_pred HHHHHHHHHHHHHhhcccc---------------------------CCceEEecC----chhhccccCCCCcccCCCccc
Confidence 9999999986544433221 122366677 444444444332 23 46
Q ss_pred ceEEeccccccccCCCCeEEEEec----cccccCCCCc----cccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHH
Q 001668 156 QVLCTTNTLAHGINLPAHTVVIKS----TQYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227 (1034)
Q Consensus 156 kVLVaT~tLa~GVNLPav~vVI~~----t~~y~~~~~~----~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~ 227 (1034)
+|+|+|++++..+.++.+.+||.- .++|+|..+. ..|+|..+..||.|||||. +.|+|+-+..++ .
T Consensus 315 kvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfrLYte~---~ 388 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEE---A 388 (699)
T ss_pred eEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEEeecHH---h
Confidence 899999999999999999999976 3678887542 4789999999999999997 699999555332 2
Q ss_pred HHHHhcCcccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHHH
Q 001668 228 YENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQK 307 (1034)
Q Consensus 228 y~~ll~~~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~~ 307 (1034)
|++-+... .....+..+|.+-+....--.++ ++. -.+.++....+.+.++
T Consensus 389 ~~~em~~~-----typeilrsNL~s~VL~LKklgI~-----------------dlv--------hfdfmDpPAPEtLMrA 438 (699)
T KOG0925|consen 389 FEKEMQPQ-----TYPEILRSNLSSTVLQLKKLGID-----------------DLV--------HFDFMDPPAPETLMRA 438 (699)
T ss_pred hhhcCCCC-----CcHHHHHHhhHHHHHHHHhcCcc-----------------ccc--------CCcCCCCCChHHHHHH
Confidence 33222221 11122233333322221111111 111 1223444445555667
Q ss_pred HHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCCCChHHHHHHhhc
Q 001668 308 VDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCH 366 (1034)
Q Consensus 308 l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~~s~~~iL~iLs~ 366 (1034)
|+.|...+++ |++| .+|++|.+||.|.+++.-+++++...+.-+..++|.+-|+
T Consensus 439 LE~LnYLaaL--dDdG---nLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAM 492 (699)
T KOG0925|consen 439 LEVLNYLAAL--DDDG---NLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAM 492 (699)
T ss_pred HHHhhhhhhh--CCCc---ccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhc
Confidence 7777777777 7666 4699999999999999999999998887777888877664
No 82
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.42 E-value=3.3e-13 Score=120.50 Aligned_cols=72 Identities=32% Similarity=0.410 Sum_probs=67.5
Q ss_pred hcceEEccCCCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCC
Q 001668 128 LYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGR 207 (1034)
Q Consensus 128 ~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR 207 (1034)
...++.+||++++.+|..+++.|++|..+|||||+.+++|||+|..++||.+. .|.+..+|.|++||+||
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~----------~~~~~~~~~Q~~GR~~R 76 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYD----------PPWSPEEYIQRIGRAGR 76 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESS----------SESSHHHHHHHHTTSST
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccc----------cCCCHHHHHHHhhcCCC
Confidence 45599999999999999999999999999999999999999999999999876 57789999999999999
Q ss_pred CC
Q 001668 208 PP 209 (1034)
Q Consensus 208 ~g 209 (1034)
.|
T Consensus 77 ~g 78 (78)
T PF00271_consen 77 IG 78 (78)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 83
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.41 E-value=6.4e-13 Score=166.62 Aligned_cols=184 Identities=22% Similarity=0.258 Sum_probs=132.9
Q ss_pred CCCCChhhhhcCCCCCcEEEEccCccCHHHHHH-HhCCCCCcEE-------------eccccceecchH-----HHHHHH
Q 001668 1 MLACNPEMKSSSLASVRFLAVSATIPNIEDIAE-WLNVPVQGIK-------------RFGEEMRPVKLT-----TKVFDI 61 (1034)
Q Consensus 1 il~~l~~L~~~~~~~~riI~lSATlpn~~dla~-wL~~~~~~i~-------------~f~~~~Rpv~L~-----~~v~~~ 61 (1034)
+|+||.++....+.++|+|+.|||+.|..+++. +++..-...+ ...+..+..... ......
T Consensus 218 llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~ 297 (851)
T COG1205 218 LLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELAT 297 (851)
T ss_pred HHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHH
Confidence 468888888888899999999999999777765 4443321101 111100000000 000112
Q ss_pred H--HhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCC
Q 001668 62 L--MQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLC 139 (1034)
Q Consensus 62 l--~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs 139 (1034)
+ ....++-++|+|+.+|+.++.++..........+ . -+..-|..|||||.
T Consensus 298 ~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~---------------------------~l~~~v~~~~~~~~ 349 (851)
T COG1205 298 LAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-G---------------------------KLLDAVSTYRAGLH 349 (851)
T ss_pred HHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-h---------------------------hhhhheeeccccCC
Confidence 2 3456788999999999999998866554432222 0 01123889999999
Q ss_pred HHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccC-CHHHHHHhccccCCCCCCCccEEEE
Q 001668 140 LKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEH-DRSTILQMCGRAGRPPFNDTGTVII 218 (1034)
Q Consensus 140 ~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~-s~~~ylQmiGRAGR~g~d~~G~aii 218 (1034)
..+|..++..|+.|.+.++++|++|..|||+.++..||... .|. +..+++||+|||||.+ ..+..++
T Consensus 350 ~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g----------~P~~s~~~~~Q~~GRaGR~~--~~~l~~~ 417 (851)
T COG1205 350 REERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYG----------YPGVSVLSFRQRAGRAGRRG--QESLVLV 417 (851)
T ss_pred HHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcC----------CCCchHHHHHHhhhhccCCC--CCceEEE
Confidence 99999999999999999999999999999999999999866 677 8999999999999997 6677666
Q ss_pred Eecccc
Q 001668 219 MTRRET 224 (1034)
Q Consensus 219 l~~~~~ 224 (1034)
+...+-
T Consensus 418 v~~~~~ 423 (851)
T COG1205 418 VLRSDP 423 (851)
T ss_pred EeCCCc
Confidence 655433
No 84
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.41 E-value=1e-12 Score=161.39 Aligned_cols=233 Identities=16% Similarity=0.151 Sum_probs=152.5
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHH
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145 (1034)
Q Consensus 66 ~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ 145 (1034)
...+.+|||.++-.++..+...|......... .+.-|-+.|+.|+..+++.
T Consensus 411 ~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~-----------------------------~~~~ilplHs~~~s~eQ~~ 461 (924)
T KOG0920|consen 411 EFEGAILVFLPGWEEILQLKELLEVNLPFADS-----------------------------LKFAILPLHSSIPSEEQQA 461 (924)
T ss_pred CCCceEEEEcCCHHHHHHHHHHhhhccccccc-----------------------------cceEEEeccccCChHHHHH
Confidence 34678999999999999888887643211110 1233888999999999999
Q ss_pred HHHHhhcCCcceEEeccccccccCCCCeEEEEecc----ccccCCCCc----cccCCHHHHHHhccccCCCCCCCccEEE
Q 001668 146 IEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKST----QYFNKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVI 217 (1034)
Q Consensus 146 ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t----~~y~~~~~~----~~p~s~~~ylQmiGRAGR~g~d~~G~ai 217 (1034)
|+...-.|..+||+||++++.+|.||++..||... +.||+..+. -...+.....||.|||||. ..|.||
T Consensus 462 VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy 538 (924)
T KOG0920|consen 462 VFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICY 538 (924)
T ss_pred hcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeE
Confidence 99999999999999999999999999999999875 458887653 1235678899999999998 599999
Q ss_pred EEeccccHHHHHHHhcCcccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHH
Q 001668 218 IMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIE 297 (1034)
Q Consensus 218 il~~~~~~~~y~~ll~~~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~ 297 (1034)
-+... ..|.++... .++.+.++..+-.-...-.+-...+..++ +. ++..-|
T Consensus 539 ~L~~~---~~~~~~~~~-----~q~PEilR~pL~~l~L~iK~l~~~~~~~f-----Ls-kaldpP--------------- 589 (924)
T KOG0920|consen 539 HLYTR---SRYEKLMLA-----YQLPEILRTPLEELCLHIKVLEQGSIKAF-----LS-KALDPP--------------- 589 (924)
T ss_pred Eeech---hhhhhcccc-----cCChHHHhChHHHhhheeeeccCCCHHHH-----HH-HhcCCC---------------
Confidence 55433 234444331 12222222221111111111111111122 22 122222
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCCCChHHHHHHhhc
Q 001668 298 KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCH 366 (1034)
Q Consensus 298 ~~l~~l~~~~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~~s~~~iL~iLs~ 366 (1034)
-.+.+..++..|...|.+..++ .+|.+|+.+|.+++++.-.++++.-..-.++.-++.+.|.
T Consensus 590 --~~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~ 651 (924)
T KOG0920|consen 590 --PADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAA 651 (924)
T ss_pred --ChHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhheehhhccccchhhhHHHH
Confidence 2344567888899999994433 6799999999999999988887653222333444444443
No 85
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.39 E-value=4.3e-12 Score=156.42 Aligned_cols=121 Identities=23% Similarity=0.338 Sum_probs=100.0
Q ss_pred HHHHHh-hcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCC
Q 001668 59 FDILMQ-YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGG 137 (1034)
Q Consensus 59 ~~~l~~-~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~g 137 (1034)
+..+.. ...+.++||||+|++.++.++..|... | ..++++||+
T Consensus 436 ~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~----g--------------------------------i~~~~~h~~ 479 (652)
T PRK05298 436 LSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL----G--------------------------------IKVRYLHSD 479 (652)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc----c--------------------------------eeEEEEECC
Confidence 344433 356889999999999999999988654 1 127889999
Q ss_pred CCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEE
Q 001668 138 LCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI 217 (1034)
Q Consensus 138 Ls~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~ai 217 (1034)
+++.+|..+++.|+.|.+.|||||+.+++|+|+|.+.+||.++ .+..+ .|.+...|+||+|||||. ..|.|+
T Consensus 480 ~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d----~eifG-~~~~~~~yiqr~GR~gR~---~~G~~i 551 (652)
T PRK05298 480 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILD----ADKEG-FLRSERSLIQTIGRAARN---VNGKVI 551 (652)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeC----Ccccc-cCCCHHHHHHHhccccCC---CCCEEE
Confidence 9999999999999999999999999999999999999888654 22111 467889999999999995 589999
Q ss_pred EEeccc
Q 001668 218 IMTRRE 223 (1034)
Q Consensus 218 il~~~~ 223 (1034)
++++..
T Consensus 552 ~~~~~~ 557 (652)
T PRK05298 552 LYADKI 557 (652)
T ss_pred EEecCC
Confidence 998754
No 86
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.38 E-value=5.7e-13 Score=147.72 Aligned_cols=175 Identities=22% Similarity=0.233 Sum_probs=128.2
Q ss_pred hhhhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEeccccce----------ecchHHHH---HHHHHhhcCCCcE
Q 001668 6 PEMKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMR----------PVKLTTKV---FDILMQYSRGKSA 71 (1034)
Q Consensus 6 ~~L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~R----------pv~L~~~v---~~~l~~~~~~~~~ 71 (1034)
.++........|+++||||+|+ ..++|+-=-.++..+. .+.+.+ .++-..+. ..++......+++
T Consensus 186 ~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVR-ldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t 264 (529)
T KOG0337|consen 186 HEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVR-LDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQT 264 (529)
T ss_pred HHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEE-eehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccce
Confidence 3344445567799999999996 5666664444443332 222111 11111111 2222333345689
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhh
Q 001668 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFL 151 (1034)
Q Consensus 72 LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~ 151 (1034)
+|||+|+..++.+...|... | .++..+++.|.+..|..-...|+
T Consensus 265 ~vf~~tk~hve~~~~ll~~~----g--------------------------------~~~s~iysslD~~aRk~~~~~F~ 308 (529)
T KOG0337|consen 265 IVFVATKHHVEYVRGLLRDF----G--------------------------------GEGSDIYSSLDQEARKINGRDFR 308 (529)
T ss_pred eEEecccchHHHHHHHHHhc----C--------------------------------CCccccccccChHhhhhcccccc
Confidence 99999999999888777654 2 23667899999999999999999
Q ss_pred cCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHH
Q 001668 152 KGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYE 229 (1034)
Q Consensus 152 ~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~ 229 (1034)
.|+..+||.|+.+|||+|+|--.-||+++ .|-+..-|+||+||+.|+| ..|.+|-++...+..+..
T Consensus 309 ~~k~~~lvvTdvaaRG~diplldnvinyd----------~p~~~klFvhRVgr~arag--rtg~aYs~V~~~~~~yl~ 374 (529)
T KOG0337|consen 309 GRKTSILVVTDVAARGLDIPLLDNVINYD----------FPPDDKLFVHRVGRVARAG--RTGRAYSLVASTDDPYLL 374 (529)
T ss_pred CCccceEEEehhhhccCCCcccccccccc----------CCCCCceEEEEecchhhcc--ccceEEEEEecccchhhh
Confidence 99999999999999999999999999988 6667778999999999998 899999777666655443
No 87
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.38 E-value=7.5e-12 Score=152.00 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=117.1
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecch----------HHHHHHH-----HHhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKL----------TTKVFDI-----LMQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L----------~~~v~~~-----l~~~~~~~~~LVFv~sRk~ 80 (1034)
++.|||.|... ..++.+..+.+.. .-+..+|+.. ...-+.. ...+..+.|+||||+|...
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~vv----~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~ 417 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLEVV----VVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEK 417 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCCEE----EeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 57899999875 5667676666431 1122232211 1111222 2345789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa 160 (1034)
++.++..|.+. |.. ...+||. +.+|+..+.+|+.+...|+||
T Consensus 418 se~ls~~L~~~----gi~--------------------------------~~~Lna~--q~~rEa~ii~~ag~~g~VtIA 459 (745)
T TIGR00963 418 SELLSNLLKER----GIP--------------------------------HNVLNAK--NHEREAEIIAQAGRKGAVTIA 459 (745)
T ss_pred HHHHHHHHHHc----CCC--------------------------------eEEeeCC--hHHHHHHHHHhcCCCceEEEE
Confidence 99999998764 221 5678998 889999999999999999999
Q ss_pred ccccccccCCCC-------eEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 161 TNTLAHGINLPA-------HTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 161 T~tLa~GVNLPa-------v~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
|+.++||+|++. ..+||++. .|.+...|.|+.|||||.| ..|.+..+...++
T Consensus 460 TnmAgRGtDI~l~~V~~~GGl~VI~t~----------~p~s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 460 TNMAGRGTDIKLEEVKELGGLYVIGTE----------RHESRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred eccccCCcCCCccchhhcCCcEEEecC----------CCCcHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 999999999998 55899765 6789999999999999998 8899997776654
No 88
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.38 E-value=1.2e-12 Score=145.76 Aligned_cols=171 Identities=18% Similarity=0.214 Sum_probs=127.1
Q ss_pred ChhhhhcCCCCCcEEEEccCccC-HHHHHHHhCCCCCcEEecccccee--cchHHH---------H---HHHHHhhcCCC
Q 001668 5 NPEMKSSSLASVRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRP--VKLTTK---------V---FDILMQYSRGK 69 (1034)
Q Consensus 5 l~~L~~~~~~~~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rp--v~L~~~---------v---~~~l~~~~~~~ 69 (1034)
+.++.+..++..|.++||||+.+ +..+-+.+-.++..+. +...--| -.|.++ + |..+.-..-.+
T Consensus 191 lk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLk-l~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~g 269 (569)
T KOG0346|consen 191 LKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILK-LTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRG 269 (569)
T ss_pred HHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEE-eccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcC
Confidence 34566677788999999999984 7777665544443332 2222222 222211 1 22222122256
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHH
Q 001668 70 SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGL 149 (1034)
Q Consensus 70 ~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~ 149 (1034)
++||||||-..|.++--.|.+.+.. -.+++|.|+..-|..|.+.
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFGik------------------------------------sciLNseLP~NSR~Hii~Q 313 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFGIK------------------------------------SCILNSELPANSRCHIIEQ 313 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhCcH------------------------------------hhhhcccccccchhhHHHH
Confidence 8999999999999988777665322 2356899999999999999
Q ss_pred hhcCCcceEEecc-----------------------------------ccccccCCCCeEEEEeccccccCCCCccccCC
Q 001668 150 FLKGDVQVLCTTN-----------------------------------TLAHGINLPAHTVVIKSTQYFNKEKGLYMEHD 194 (1034)
Q Consensus 150 F~~G~ikVLVaT~-----------------------------------tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s 194 (1034)
|..|..++||||+ -.+||||+-.|..|||++ +|-+
T Consensus 314 FNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD----------~P~t 383 (569)
T KOG0346|consen 314 FNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFD----------FPET 383 (569)
T ss_pred hhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecC----------CCCc
Confidence 9999999999999 268999999999999988 8899
Q ss_pred HHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 195 RSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 195 ~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
+..|+||+||+||++ ..|.++.++...+
T Consensus 384 ~~sYIHRvGRTaRg~--n~GtalSfv~P~e 411 (569)
T KOG0346|consen 384 VTSYIHRVGRTARGN--NKGTALSFVSPKE 411 (569)
T ss_pred hHHHHHhccccccCC--CCCceEEEecchH
Confidence 999999999999997 8999997776644
No 89
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=9.7e-13 Score=154.52 Aligned_cols=188 Identities=18% Similarity=0.193 Sum_probs=122.6
Q ss_pred eEEccCCCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEecc----ccccCCCCc----cccCCHHHHHHhc
Q 001668 131 VGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKST----QYFNKEKGL----YMEHDRSTILQMC 202 (1034)
Q Consensus 131 V~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t----~~y~~~~~~----~~p~s~~~ylQmi 202 (1034)
|.++++=|+.+.+..|++.--.|..-++|||++++..+.||.+.+||.++ +.||...|. ..-+|....-||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 78899999999999999999999999999999999999999999999885 457766653 1225677788999
Q ss_pred cccCCCCCCCccEEEEEeccccHHHHHHHhcCcccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCC
Q 001668 203 GRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNP 282 (1034)
Q Consensus 203 GRAGR~g~d~~G~aiil~~~~~~~~y~~ll~~~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP 282 (1034)
|||||-| .|+||-+.... .|. ..+.++-..||....+.++- --|++ .--.++..-|
T Consensus 687 GRAGRtg---pGHcYRLYSSA---Vf~--------------~~Fe~fS~PEIlk~Pve~lv---LqMKs-MnI~kVvnFP 742 (1172)
T KOG0926|consen 687 GRAGRTG---PGHCYRLYSSA---VFS--------------NDFEEFSLPEILKKPVESLV---LQMKS-MNIDKVVNFP 742 (1172)
T ss_pred cccCCCC---CCceeehhhhH---Hhh--------------cchhhhccHHHhhCcHHHHH---HHHHh-cCccceecCC
Confidence 9999987 99999665432 121 12223333344443332221 11110 0000000001
Q ss_pred CcccccccCChhHHHHHHHHHHHHHHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCCCChHH
Q 001668 283 QNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLED 359 (1034)
Q Consensus 283 ~~Y~l~~~~s~~~l~~~l~~l~~~~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~~s~~~ 359 (1034)
.+ ..++. ..+..+...|...|.+ |.+| ..|.+|..||.|+++|.-.+++.-..+...+..
T Consensus 743 ----FP--tpPd~------~~L~~Aer~L~~LgAL--d~~g---~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy 802 (1172)
T KOG0926|consen 743 ----FP--TPPDR------SALEKAERRLKALGAL--DSNG---GLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPY 802 (1172)
T ss_pred ----CC--CCccH------HHHHHHHHHHHHhccc--cccC---CcccccchhcccccChhHHHHHHHHHhhcchhH
Confidence 11 11111 1233566677888888 5555 469999999999999999988865444333333
No 90
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.36 E-value=3.3e-12 Score=156.58 Aligned_cols=122 Identities=25% Similarity=0.314 Sum_probs=101.1
Q ss_pred HHHHHh-hcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCC
Q 001668 59 FDILMQ-YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGG 137 (1034)
Q Consensus 59 ~~~l~~-~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~g 137 (1034)
+..+.. ..++.++||||+|++.++.++..|.+. |. .++++||+
T Consensus 432 l~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----gi--------------------------------~~~~lh~~ 475 (655)
T TIGR00631 432 LSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----GI--------------------------------KVRYLHSE 475 (655)
T ss_pred HHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----cc--------------------------------ceeeeeCC
Confidence 344433 456889999999999999999988764 21 27889999
Q ss_pred CCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEecc-ccccCCCCccccCCHHHHHHhccccCCCCCCCccEE
Q 001668 138 LCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKST-QYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTV 216 (1034)
Q Consensus 138 Ls~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t-~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~a 216 (1034)
+++.+|..+++.|+.|.+.|||||+.+++|+|+|.+.+||..+ ..++ .|.+...|+||+|||||. ..|.+
T Consensus 476 ~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG------~p~~~~~~iqriGRagR~---~~G~v 546 (655)
T TIGR00631 476 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEG------FLRSERSLIQTIGRAARN---VNGKV 546 (655)
T ss_pred CCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCccccc------CCCCHHHHHHHhcCCCCC---CCCEE
Confidence 9999999999999999999999999999999999999887643 2222 467889999999999997 48999
Q ss_pred EEEeccccH
Q 001668 217 IIMTRRETV 225 (1034)
Q Consensus 217 iil~~~~~~ 225 (1034)
+++++..+.
T Consensus 547 i~~~~~~~~ 555 (655)
T TIGR00631 547 IMYADKITD 555 (655)
T ss_pred EEEEcCCCH
Confidence 999876543
No 91
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.35 E-value=1.2e-12 Score=142.63 Aligned_cols=162 Identities=21% Similarity=0.350 Sum_probs=123.4
Q ss_pred CCCCcEEEEccCccC--HHHHHHHhCCCCCcEEecccc---------ceecchHH-HHH-HH---HHhhcCCCcEEEEcC
Q 001668 13 LASVRFLAVSATIPN--IEDIAEWLNVPVQGIKRFGEE---------MRPVKLTT-KVF-DI---LMQYSRGKSALVFCS 76 (1034)
Q Consensus 13 ~~~~riI~lSATlpn--~~dla~wL~~~~~~i~~f~~~---------~Rpv~L~~-~v~-~~---l~~~~~~~~~LVFv~ 76 (1034)
-++..+|+|+||..| ..|....|+.... +.|... +|.-|-.+ ... ++ +...-.|...||||-
T Consensus 248 f~~~~iigltatatn~vl~d~k~il~ie~~--~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~ 325 (695)
T KOG0353|consen 248 FKGAPIIGLTATATNHVLDDAKDILCIEAA--FTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCF 325 (695)
T ss_pred CCCCceeeeehhhhcchhhHHHHHHhHHhh--heeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEe
Confidence 357889999999997 6677666765432 222222 22222211 112 22 222345788999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcc
Q 001668 77 TRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQ 156 (1034)
Q Consensus 77 sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ik 156 (1034)
++++|+.+|..|...++. .+.+|+.|.+++|..+-+.+-.|.|+
T Consensus 326 sq~d~ekva~alkn~gi~------------------------------------a~~yha~lep~dks~~hq~w~a~eiq 369 (695)
T KOG0353|consen 326 SQKDCEKVAKALKNHGIH------------------------------------AGAYHANLEPEDKSGAHQGWIAGEIQ 369 (695)
T ss_pred ccccHHHHHHHHHhcCcc------------------------------------ccccccccCccccccccccccccceE
Confidence 999999999999765322 56789999999999999999999999
Q ss_pred eEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHH------------------------------------
Q 001668 157 VLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQ------------------------------------ 200 (1034)
Q Consensus 157 VLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQ------------------------------------ 200 (1034)
|+|||-.+++|||-|++++||+.. .|.++..|.|
T Consensus 370 vivatvafgmgidkpdvrfvihhs----------l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkif 439 (695)
T KOG0353|consen 370 VIVATVAFGMGIDKPDVRFVIHHS----------LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIF 439 (695)
T ss_pred EEEEEeeecccCCCCCeeEEEecc----------cchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceee
Confidence 999999999999999999999866 7888999999
Q ss_pred -------hccccCCCCCCCccEEEEEecccc
Q 001668 201 -------MCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 201 -------miGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
..|||||.+ -...||++..-.+
T Consensus 440 favfsekesgragrd~--~~a~cilyy~~~d 468 (695)
T KOG0353|consen 440 FAVFSEKESGRAGRDD--MKADCILYYGFAD 468 (695)
T ss_pred eeeecchhccccccCC--CcccEEEEechHH
Confidence 789999985 6888998875444
No 92
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.34 E-value=1.2e-12 Score=144.71 Aligned_cols=111 Identities=23% Similarity=0.364 Sum_probs=96.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
...++||||.|+.+|..+-+.+.+.... .+.+..+||...+.+|+.-
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~---------------------------------~~scvclhgDrkP~Erk~n 550 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGK---------------------------------HYSCVCLHGDRKPDERKAN 550 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCc---------------------------------cceeEEEecCCChhHHHHH
Confidence 3468999999999999999888775321 2347789999999999999
Q ss_pred HHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecc
Q 001668 147 EGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR 222 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~ 222 (1034)
++.|+.+.++.||||+++|||+||-.+-++|+-| .|-+...|+||+||.||+- +-|.+|.++..
T Consensus 551 le~Fkk~dvkflictdvaargldi~g~p~~invt----------lpd~k~nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 551 LESFKKFDVKFLICTDVAARGLDITGLPFMINVT----------LPDDKTNYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred HHhhhhcCeEEEEEehhhhccccccCCceEEEEe----------cCcccchhhhhhhccchhh--hcceeEEEeec
Confidence 9999999999999999999999999999999988 7888899999999999985 78999955433
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=6.7e-12 Score=153.62 Aligned_cols=179 Identities=21% Similarity=0.261 Sum_probs=128.2
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecch-----------HHH---HHHHH-HhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKL-----------TTK---VFDIL-MQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L-----------~~~---v~~~l-~~~~~~~~~LVFv~sRk~ 80 (1034)
++-|||.|... ..++.+..+.+. . .-|..+|+.. ..+ +...+ ..+..+.|+||||+|+..
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~v---v-~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNMEV---I-TIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCCE---E-EcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 57789999875 556666666542 1 1222333211 111 12222 235678999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa 160 (1034)
++.++..|.+. |.. ...+||.+...++..|.++++.|. |+||
T Consensus 453 se~ls~~L~~~----gi~--------------------------------~~~Lna~~~~~Ea~ii~~ag~~g~--VtIA 494 (796)
T PRK12906 453 SERLSHLLDEA----GIP--------------------------------HAVLNAKNHAKEAEIIMNAGQRGA--VTIA 494 (796)
T ss_pred HHHHHHHHHHC----CCC--------------------------------eeEecCCcHHHHHHHHHhcCCCce--EEEE
Confidence 99999998765 221 567899999999999999999887 9999
Q ss_pred ccccccccCCC---CeE-----EEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccH-------
Q 001668 161 TNTLAHGINLP---AHT-----VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV------- 225 (1034)
Q Consensus 161 T~tLa~GVNLP---av~-----vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~------- 225 (1034)
|+.++||+||+ .+. +||+.. .|.+...+.|+.|||||.| ..|.+.++.+-++.
T Consensus 495 TnmAGRGtDI~l~~~V~~~GGLhVI~te----------~pes~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~~f~~ 562 (796)
T PRK12906 495 TNMAGRGTDIKLGPGVKELGGLAVIGTE----------RHESRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMRRFGS 562 (796)
T ss_pred eccccCCCCCCCCcchhhhCCcEEEeee----------cCCcHHHHHHHhhhhccCC--CCcceEEEEeccchHHHhhCc
Confidence 99999999994 788 899755 6789999999999999998 89999988766541
Q ss_pred HHHHHHh------cCcccccchhhhhhhhh
Q 001668 226 HLYENLL------NGCEMVESQLLSCVTEH 249 (1034)
Q Consensus 226 ~~y~~ll------~~~~pieS~L~~~L~d~ 249 (1034)
+...+++ .+..||++.+.....++
T Consensus 563 ~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 592 (796)
T PRK12906 563 DRVKAFLDRLGMNDDDQVIESRMITRQVES 592 (796)
T ss_pred HHHHHHHHHcCCCCCCCcccchHHHHHHHH
Confidence 1122333 23567788776655444
No 94
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.34 E-value=3.4e-12 Score=145.47 Aligned_cols=117 Identities=23% Similarity=0.346 Sum_probs=94.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.+.++|||++.|..++.++..|...+.... ..+++++-.-+..||++.++..+
T Consensus 365 ~~~RvIVFT~yRdTae~i~~~L~~~~~~~~---------------------------~rFiGQa~r~~~~GMsQkeQ~ei 417 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKAR---------------------------VRFIGQASREGDKGMSQKEQKEI 417 (542)
T ss_pred CCceEEEEehhHhHHHHHHHHHHhcCCcce---------------------------eEEeeccccccccccCHHHHHHH
Confidence 456899999999999999999977633211 12334444446689999999999
Q ss_pred HHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccc
Q 001668 147 EGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~ 223 (1034)
.+.|++|..+|||||++.+.|+|+|.+++||-|. + + .|.-.++||.||+||. +.|.++++..+.
T Consensus 418 I~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYE----p-----v-pSeIR~IQR~GRTGR~---r~Grv~vLvt~g 481 (542)
T COG1111 418 IDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYE----P-----V-PSEIRSIQRKGRTGRK---RKGRVVVLVTEG 481 (542)
T ss_pred HHHHhcCCceEEEEcccccccCCCCcccEEEEec----C-----C-cHHHHHHHhhCccccC---CCCeEEEEEecC
Confidence 9999999999999999999999999999999744 3 2 2566789999999996 699999776654
No 95
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.33 E-value=5.6e-12 Score=145.24 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.++++||||+|++.++.++..|.+.. . ...+..+||.+++.+|..+
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~----~------------------------------~~~~~~l~g~~~~~~R~~~ 316 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQG----L------------------------------GDDIGRITGFAPKKDRERA 316 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhC----C------------------------------CceEEeeecCCCHHHHHHh
Confidence 56899999999999999999987531 0 1127789999999998654
Q ss_pred HHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccC
Q 001668 147 EGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAG 206 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAG 206 (1034)
+..+|||||+++++|||+|.+.||+ .|.+..+|+||+||+|
T Consensus 317 ------~~~~iLVaTdv~~rGiDi~~~~vi~-------------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ------MQFDILLGTSTVDVGVDFKRDWLIF-------------SARDAAAFWQRLGRLG 357 (357)
T ss_pred ------ccCCEEEEecHHhcccCCCCceEEE-------------CCCCHHHHhhhcccCC
Confidence 4789999999999999999985543 2457899999999998
No 96
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.31 E-value=2.9e-11 Score=152.32 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=91.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.+.++||||+++..+..++..|... .| ..++.+||+|++.+|..+
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~---~G--------------------------------i~~~~ihG~~s~~eR~~~ 536 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALRER---EG--------------------------------IRAAVFHEGMSIIERDRA 536 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc---cC--------------------------------eeEEEEECCCCHHHHHHH
Confidence 4679999999999999999888532 12 227789999999999999
Q ss_pred HHHhhc--CCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEE
Q 001668 147 EGLFLK--GDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219 (1034)
Q Consensus 147 e~~F~~--G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil 219 (1034)
.+.|++ |..+|||||+++++|+|++.+.+||+++ .|.++..|.||+||+||.| ..|.+.++
T Consensus 537 ~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfD----------lP~nP~~~eQRIGR~~RiG--Q~~~V~i~ 599 (956)
T PRK04914 537 AAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFD----------LPFNPDLLEQRIGRLDRIG--QKHDIQIH 599 (956)
T ss_pred HHHHhcCCCCccEEEechhhccCCCcccccEEEEec----------CCCCHHHHHHHhcccccCC--CCceEEEE
Confidence 999997 4699999999999999999999999987 7888999999999999998 45555443
No 97
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.30 E-value=1.4e-11 Score=148.05 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=88.4
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHH
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145 (1034)
Q Consensus 66 ~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ 145 (1034)
..++++||||...+.++.+++.|... |. .+.++||++++++|..
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~~----g~--------------------------------~v~~i~G~~~~~eR~~ 385 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKKV----YD--------------------------------KVYYVSGEVDTEDRNE 385 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHHc----CC--------------------------------CEEEEeCCCCHHHHHH
Confidence 35678999999988998888888653 21 2889999999999999
Q ss_pred HHHHhhcCCcceEEec-cccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEE
Q 001668 146 IEGLFLKGDVQVLCTT-NTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219 (1034)
Q Consensus 146 ve~~F~~G~ikVLVaT-~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil 219 (1034)
+++.|++|...||||| +.+++|+|+|.+++||... .+.+...|+||+||+||++ +....|+++
T Consensus 386 i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~----------p~~s~~~~~QriGR~~R~~-~~K~~~~i~ 449 (501)
T PHA02558 386 MKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAH----------PSKSKIIVLQSIGRVLRKH-GSKSIATVW 449 (501)
T ss_pred HHHHHhCCCCeEEEEEcceeccccccccccEEEEec----------CCcchhhhhhhhhccccCC-CCCceEEEE
Confidence 9999999999999999 8999999999999999754 3456788999999999986 233345544
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=1.2e-10 Score=139.64 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=73.4
Q ss_pred cceEEccCCCCHHHH--HHHHHHhhcCCcceEEeccccccccCCCCeEEEE--eccccccCCCCccccCCHHHHHHhccc
Q 001668 129 YGVGYHNGGLCLKDR--NLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVI--KSTQYFNKEKGLYMEHDRSTILQMCGR 204 (1034)
Q Consensus 129 ~GV~~hH~gLs~~dR--~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI--~~t~~y~~~~~~~~p~s~~~ylQmiGR 204 (1034)
..|...|+.++...+ +.+++.|++|.++|||+|+.+++|+|+|++++|+ +.+.....+.-+-.+.....|+|++||
T Consensus 285 ~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GR 364 (505)
T TIGR00595 285 ARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGR 364 (505)
T ss_pred CcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhc
Confidence 468999999987766 8999999999999999999999999999998663 443221111111112245789999999
Q ss_pred cCCCCCCCccEEEEEeccccHHH
Q 001668 205 AGRPPFNDTGTVIIMTRRETVHL 227 (1034)
Q Consensus 205 AGR~g~d~~G~aiil~~~~~~~~ 227 (1034)
|||.+ ..|.++|.+...+...
T Consensus 365 agR~~--~~g~viiqt~~p~~~~ 385 (505)
T TIGR00595 365 AGRAE--DPGQVIIQTYNPNHPA 385 (505)
T ss_pred cCCCC--CCCEEEEEeCCCCCHH
Confidence 99976 7899998886655433
No 99
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.24 E-value=6.8e-11 Score=140.20 Aligned_cols=181 Identities=19% Similarity=0.380 Sum_probs=122.2
Q ss_pred hhhhhcCCCCCcEEEEccC-ccCHHHHHHHhCCCCCcEEeccccceec-------chHHHHHHHH-HhhcCCCcEEEEcC
Q 001668 6 PEMKSSSLASVRFLAVSAT-IPNIEDIAEWLNVPVQGIKRFGEEMRPV-------KLTTKVFDIL-MQYSRGKSALVFCS 76 (1034)
Q Consensus 6 ~~L~~~~~~~~riI~lSAT-lpn~~dla~wL~~~~~~i~~f~~~~Rpv-------~L~~~v~~~l-~~~~~~~~~LVFv~ 76 (1034)
.+|++.....+.++.|||| ||-.-.+..|-..+...|.-..+...|+ .-...++..+ ....+|+|+.|-||
T Consensus 402 ~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcP 481 (677)
T COG1200 402 LALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCP 481 (677)
T ss_pred HHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEec
Confidence 3455554336899999999 4433333334333333333333333332 2334566666 45678999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhh-hcceEEccCCCCHHHHHHHHHHhhcCCc
Q 001668 77 TRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYI-LYGVGYHNGGLCLKDRNLIEGLFLKGDV 155 (1034)
Q Consensus 77 sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l-~~GV~~hH~gLs~~dR~~ve~~F~~G~i 155 (1034)
-..+.+.+--.-... ..+ .|+..+ ...|+.+||.|+.+++..|++.|++|.+
T Consensus 482 LIeESE~l~l~~a~~---------------~~~------------~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~ 534 (677)
T COG1200 482 LIEESEKLELQAAEE---------------LYE------------ELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEI 534 (677)
T ss_pred cccccccchhhhHHH---------------HHH------------HHHHHcccceeEEEecCCChHHHHHHHHHHHcCCC
Confidence 877766332110000 001 112112 3449999999999999999999999999
Q ss_pred ceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 156 QVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 156 kVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
+|||||++.+.|||+|+-+++|- +++++ ...+++.|.-||.||.+ ..+.|++++....
T Consensus 535 ~ILVaTTVIEVGVdVPnATvMVI----e~AER-----FGLaQLHQLRGRVGRG~--~qSyC~Ll~~~~~ 592 (677)
T COG1200 535 DILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVGRGD--LQSYCVLLYKPPL 592 (677)
T ss_pred cEEEEeeEEEecccCCCCeEEEE----echhh-----hhHHHHHHhccccCCCC--cceEEEEEeCCCC
Confidence 99999999999999999887662 44432 46899999999999985 8899999987654
No 100
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=7.1e-11 Score=145.45 Aligned_cols=154 Identities=17% Similarity=0.183 Sum_probs=111.0
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchH----------HHHHH----HH-HhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLT----------TKVFD----IL-MQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~----------~~v~~----~l-~~~~~~~~~LVFv~sRk~ 80 (1034)
++-||+.|... ..++.+-.+.+. ..-+..||+... ..-+. .+ ..+..+.|+||||+|+..
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~V----v~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~ 610 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLDV----VVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEV 610 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCcE----EECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHH
Confidence 45678888764 556665555442 122344443211 11122 22 234578999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa 160 (1034)
++.++..|... |.. ...+|| .+.+|+....+|+.+...|+||
T Consensus 611 sE~Ls~~L~~~----gI~--------------------------------h~vLna--kq~~REa~Iia~AG~~g~VtIA 652 (1025)
T PRK12900 611 SETLSRMLRAK----RIA--------------------------------HNVLNA--KQHDREAEIVAEAGQKGAVTIA 652 (1025)
T ss_pred HHHHHHHHHHc----CCC--------------------------------ceeecC--CHHHhHHHHHHhcCCCCeEEEe
Confidence 99999988765 221 456776 5889999999999999999999
Q ss_pred ccccccccCCC---CeE-----EEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 161 TNTLAHGINLP---AHT-----VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 161 T~tLa~GVNLP---av~-----vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
|+.++||+||+ .+. +||... .|.+...|.|+.|||||.| ..|.++++.+.++
T Consensus 653 TNMAGRGtDIkl~~~V~~vGGL~VIgte----------rhes~Rid~Ql~GRtGRqG--dpGsS~ffvSleD 712 (1025)
T PRK12900 653 TNMAGRGTDIKLGEGVRELGGLFILGSE----------RHESRRIDRQLRGRAGRQG--DPGESVFYVSLED 712 (1025)
T ss_pred ccCcCCCCCcCCccchhhhCCceeeCCC----------CCchHHHHHHHhhhhhcCC--CCcceEEEechhH
Confidence 99999999999 332 345433 5678889999999999998 8999998877654
No 101
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.20 E-value=7.8e-11 Score=141.57 Aligned_cols=120 Identities=21% Similarity=0.351 Sum_probs=95.4
Q ss_pred hcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHH
Q 001668 65 YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRN 144 (1034)
Q Consensus 65 ~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~ 144 (1034)
..+..++||||.+|..|..+-++|.+. ...|.- -..+++.|-+---.||++.+..
T Consensus 410 ~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir------------------------~~~fiGq~~s~~~~gmtqk~Q~ 464 (746)
T KOG0354|consen 410 QNPDSRTIIFVETRESALALKKWLLQL-HELGIK------------------------AEIFIGQGKSTQSTGMTQKEQK 464 (746)
T ss_pred cCCCccEEEEEehHHHHHHHHHHHHhh-hhcccc------------------------cceeeeccccccccccCHHHHH
Confidence 345678999999999999999988752 221110 0123344444444899999999
Q ss_pred HHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccc
Q 001668 145 LIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223 (1034)
Q Consensus 145 ~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~ 223 (1034)
.+++.|++|.++|||||++++.|+|+|.+.+||.|+ .--++-..+||.|| ||+ +.|.+++++...
T Consensus 465 evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd----------~~snpIrmIQrrGR-gRa---~ns~~vll~t~~ 529 (746)
T KOG0354|consen 465 EVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYD----------YSSNPIRMVQRRGR-GRA---RNSKCVLLTTGS 529 (746)
T ss_pred HHHHHHhCCCccEEEEecchhccCCcccccEEEEec----------CCccHHHHHHHhcc-ccc---cCCeEEEEEcch
Confidence 999999999999999999999999999999999977 23357789999999 998 699999887743
No 102
>PRK09694 helicase Cas3; Provisional
Probab=99.19 E-value=2e-10 Score=143.97 Aligned_cols=101 Identities=20% Similarity=0.273 Sum_probs=80.3
Q ss_pred hhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHH
Q 001668 64 QYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143 (1034)
Q Consensus 64 ~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR 143 (1034)
....++++||||||++.|+.+++.|.+.... ...|..+||.+.+.+|
T Consensus 556 ~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~---------------------------------~~~v~llHsrf~~~dR 602 (878)
T PRK09694 556 AANAGAQVCLICNLVDDAQKLYQRLKELNNT---------------------------------QVDIDLFHARFTLNDR 602 (878)
T ss_pred HHhcCCEEEEEECCHHHHHHHHHHHHhhCCC---------------------------------CceEEEEeCCCCHHHH
Confidence 3467889999999999999999998754100 0128899999999999
Q ss_pred H----HHHHHh-hcCC---cceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCC
Q 001668 144 N----LIEGLF-LKGD---VQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPF 210 (1034)
Q Consensus 144 ~----~ve~~F-~~G~---ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~ 210 (1034)
. .+++.| ++|. .+|||||.++++|||++ ..++|... . ++..++||+||+||.+.
T Consensus 603 ~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdl----------a--PidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 603 REKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQL----------C--PVDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECC----------C--CHHHHHHHHhccCCCCC
Confidence 5 455677 6666 47999999999999996 57788643 3 46799999999999874
No 103
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.17 E-value=5.6e-11 Score=105.74 Aligned_cols=72 Identities=31% Similarity=0.468 Sum_probs=65.4
Q ss_pred hcceEEccCCCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCC
Q 001668 128 LYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGR 207 (1034)
Q Consensus 128 ~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR 207 (1034)
..++..+||++++.+|..+++.|++|...|||+|+++++|+|+|....||... .+.+..+|.||+||+||
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~----------~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYD----------LPWSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeC----------CCCCHHHHHHhhccccc
Confidence 45689999999999999999999999999999999999999999888777655 46789999999999999
Q ss_pred CC
Q 001668 208 PP 209 (1034)
Q Consensus 208 ~g 209 (1034)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 75
No 104
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.17 E-value=3.3e-10 Score=123.50 Aligned_cols=122 Identities=21% Similarity=0.310 Sum_probs=97.2
Q ss_pred HHHHHH-hhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccC
Q 001668 58 VFDILM-QYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNG 136 (1034)
Q Consensus 58 v~~~l~-~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~ 136 (1034)
++.++. +...+.|++||+++....+.+|..|...... ..+++.|+
T Consensus 294 l~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~----------------------------------~~i~~Vhs 339 (441)
T COG4098 294 LKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK----------------------------------ETIASVHS 339 (441)
T ss_pred HHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc----------------------------------cceeeeec
Confidence 345553 4567899999999999999999988654211 12677777
Q ss_pred CCCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEE
Q 001668 137 GLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTV 216 (1034)
Q Consensus 137 gLs~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~a 216 (1034)
. ...|....++||+|++.+|++|++|+|||.+|.+.|.+-+..+ .-++-+.++|++||+||.--...|.+
T Consensus 340 ~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh--------~vfTesaLVQIaGRvGRs~~~PtGdv 409 (441)
T COG4098 340 E--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEH--------RVFTESALVQIAGRVGRSLERPTGDV 409 (441)
T ss_pred c--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCc--------ccccHHHHHHHhhhccCCCcCCCCcE
Confidence 5 5678899999999999999999999999999999999976622 23678899999999999865567988
Q ss_pred EEEeccc
Q 001668 217 IIMTRRE 223 (1034)
Q Consensus 217 iil~~~~ 223 (1034)
+.+-...
T Consensus 410 ~FFH~G~ 416 (441)
T COG4098 410 LFFHYGK 416 (441)
T ss_pred EEEeccc
Confidence 8776443
No 105
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=3.4e-10 Score=138.49 Aligned_cols=94 Identities=24% Similarity=0.288 Sum_probs=80.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.+.++||||.+...+..++..| |+.++||++++.+|..+
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L-----------------------------------------~~~~I~G~ts~~ER~~i 533 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL-----------------------------------------GKPFIYGPTSQQERMQI 533 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc-----------------------------------------CCceEECCCCHHHHHHH
Confidence 6789999999988776666544 24568999999999999
Q ss_pred HHHhhcC-CcceEEeccccccccCCCCeEEEEeccccccCCCCcccc-CCHHHHHHhccccCCCCCC
Q 001668 147 EGLFLKG-DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYME-HDRSTILQMCGRAGRPPFN 211 (1034)
Q Consensus 147 e~~F~~G-~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p-~s~~~ylQmiGRAGR~g~d 211 (1034)
++.|+.| .+++||+|.++.+|||+|...+||+.. .| -+..+|+||+||++|++-+
T Consensus 534 l~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s----------~~~gS~~q~iQRlGRilR~~~~ 590 (732)
T TIGR00603 534 LQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQIS----------SHYGSRRQEAQRLGRILRAKKG 590 (732)
T ss_pred HHHHHhCCCccEEEEecccccccCCCCCCEEEEeC----------CCCCCHHHHHHHhcccccCCCC
Confidence 9999865 889999999999999999999999855 23 3789999999999999733
No 106
>PRK13766 Hef nuclease; Provisional
Probab=99.11 E-value=3.2e-10 Score=143.72 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=90.4
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHH
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145 (1034)
Q Consensus 66 ~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ 145 (1034)
..++++||||++++.|+.++..|... |.... .+.+.+...-|+||++.+|..
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~----~~~~~------------------------~~~g~~~~~~~~~~~~~~r~~ 414 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKE----GIKAV------------------------RFVGQASKDGDKGMSQKEQIE 414 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhC----CCceE------------------------EEEccccccccCCCCHHHHHH
Confidence 46789999999999999999988543 21100 000000001245799999999
Q ss_pred HHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecc
Q 001668 146 IEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR 222 (1034)
Q Consensus 146 ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~ 222 (1034)
+.+.|++|.++|||||+.+++|+|+|.+++||+++ .+.+...|+||+||+||.| .|.++++...
T Consensus 415 ~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd----------~~~s~~r~iQR~GR~gR~~---~~~v~~l~~~ 478 (773)
T PRK13766 415 ILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYE----------PVPSEIRSIQRKGRTGRQE---EGRVVVLIAK 478 (773)
T ss_pred HHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeC----------CCCCHHHHHHHhcccCcCC---CCEEEEEEeC
Confidence 99999999999999999999999999999999866 4567889999999999986 5888866654
No 107
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.11 E-value=9.9e-10 Score=136.29 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=74.0
Q ss_pred cceEEccCCCC--HHHHHHHHHHhhcCCcceEEeccccccccCCCCeEEEE--eccccccCCCCccccCCHHHHHHhccc
Q 001668 129 YGVGYHNGGLC--LKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVI--KSTQYFNKEKGLYMEHDRSTILQMCGR 204 (1034)
Q Consensus 129 ~GV~~hH~gLs--~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI--~~t~~y~~~~~~~~p~s~~~ylQmiGR 204 (1034)
..|...|+++. +.+|+.+++.|++|+++|||+|+.+++|+|+|.+.+|+ +.+...+.+.-+-.+.....|+|++||
T Consensus 453 ~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GR 532 (679)
T PRK05580 453 ARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGR 532 (679)
T ss_pred CcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhh
Confidence 46889999987 46799999999999999999999999999999999774 333211111111011235789999999
Q ss_pred cCCCCCCCccEEEEEeccccHHHHH
Q 001668 205 AGRPPFNDTGTVIIMTRRETVHLYE 229 (1034)
Q Consensus 205 AGR~g~d~~G~aiil~~~~~~~~y~ 229 (1034)
|||.+ ..|.+++.|...+...++
T Consensus 533 agR~~--~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 533 AGRAE--KPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred ccCCC--CCCEEEEEeCCCCCHHHH
Confidence 99975 899999998766544333
No 108
>PRK14701 reverse gyrase; Provisional
Probab=99.06 E-value=2.2e-10 Score=151.39 Aligned_cols=168 Identities=17% Similarity=0.214 Sum_probs=105.8
Q ss_pred CCCc-EEEEccCccCHHHHHHHhCCCCCcEE---------eccccceecc--hHHHHHHHHHhhcCCCcEEEEcCCHHHH
Q 001668 14 ASVR-FLAVSATIPNIEDIAEWLNVPVQGIK---------RFGEEMRPVK--LTTKVFDILMQYSRGKSALVFCSTRKGA 81 (1034)
Q Consensus 14 ~~~r-iI~lSATlpn~~dla~wL~~~~~~i~---------~f~~~~Rpv~--L~~~v~~~l~~~~~~~~~LVFv~sRk~~ 81 (1034)
...| ++.+|||++.-.++..++.... .+. +....+-.+. ....+...+... +.++||||+|++.+
T Consensus 267 ~~~~~ll~~SAT~~~r~~~~~l~~~~l-~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~--g~~gIVF~~t~~~~ 343 (1638)
T PRK14701 267 NKIGCLIVASATGKAKGDRVKLYRELL-GFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKKL--GKGGLIFVPIDEGA 343 (1638)
T ss_pred CCccEEEEEecCCCchhHHHHHhhcCe-EEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHhC--CCCeEEEEeccccc
Confidence 4455 5779999986455555553211 110 0000010011 012333444333 57899999999864
Q ss_pred ---HHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceE
Q 001668 82 ---QEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVL 158 (1034)
Q Consensus 82 ---e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVL 158 (1034)
+.+|..|... |. .++.+||+ |..+++.|++|.++||
T Consensus 344 e~ae~la~~L~~~----Gi--------------------------------~a~~~h~~-----R~~~l~~F~~G~~~VL 382 (1638)
T PRK14701 344 EKAEEIEKYLLED----GF--------------------------------KIELVSAK-----NKKGFDLFEEGEIDYL 382 (1638)
T ss_pred hHHHHHHHHHHHC----CC--------------------------------eEEEecch-----HHHHHHHHHcCCCCEE
Confidence 7778877653 22 27888985 8999999999999999
Q ss_pred Eec----cccccccCCCC-eEEEEeccccccCCCCccccCCHH-------------HHHHhccccCCCCCCCccEEEEEe
Q 001668 159 CTT----NTLAHGINLPA-HTVVIKSTQYFNKEKGLYMEHDRS-------------TILQMCGRAGRPPFNDTGTVIIMT 220 (1034)
Q Consensus 159 VaT----~tLa~GVNLPa-v~vVI~~t~~y~~~~~~~~p~s~~-------------~ylQmiGRAGR~g~d~~G~aiil~ 220 (1034)
||| ++++||||+|+ +++||+++ .++.+ .++. ..++|.|||||.| ..+.+++..
T Consensus 383 VaT~s~~gvaaRGIDiP~~Vryvi~~~----~Pk~~---~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~ 453 (1638)
T PRK14701 383 IGVATYYGTLVRGLDLPERIRFAVFYG----VPKFR---FRVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDV 453 (1638)
T ss_pred EEecCCCCeeEecCccCCccCEEEEeC----CCCCC---cchhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHh
Confidence 999 48999999998 99999855 33211 1222 3456779999988 455555433
Q ss_pred ccccHHHHHHHhcC
Q 001668 221 RRETVHLYENLLNG 234 (1034)
Q Consensus 221 ~~~~~~~y~~ll~~ 234 (1034)
..+.....++++..
T Consensus 454 ~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 454 FPEDVEFLRSILKD 467 (1638)
T ss_pred HHHHHHHHHHHhcc
Confidence 34445555555554
No 109
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.01 E-value=4.6e-09 Score=131.22 Aligned_cols=168 Identities=20% Similarity=0.340 Sum_probs=121.6
Q ss_pred ChhhhhcCCCCCcEEEEccC-ccCHHHHHHHhCC--------CCC---cEEeccccceecchHHHHHHHHHhhcCCCcEE
Q 001668 5 NPEMKSSSLASVRFLAVSAT-IPNIEDIAEWLNV--------PVQ---GIKRFGEEMRPVKLTTKVFDILMQYSRGKSAL 72 (1034)
Q Consensus 5 l~~L~~~~~~~~riI~lSAT-lpn~~dla~wL~~--------~~~---~i~~f~~~~Rpv~L~~~v~~~l~~~~~~~~~L 72 (1034)
..+|++. ..++-++-|||| ||-.-.+| ..|. ||. .+..|-..+-|.-++. .+++...+|+|+-
T Consensus 733 KEkLK~L-r~~VDvLTLSATPIPRTL~Ms-m~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ire---AI~REl~RgGQvf 807 (1139)
T COG1197 733 KEKLKEL-RANVDVLTLSATPIPRTLNMS-LSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIRE---AILRELLRGGQVF 807 (1139)
T ss_pred HHHHHHH-hccCcEEEeeCCCCcchHHHH-HhcchhhhhccCCCCCCcceEEEEecCChHHHHH---HHHHHHhcCCEEE
Confidence 3444444 468999999999 44322221 2222 221 1222222222222221 2346778999999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhc
Q 001668 73 VFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLK 152 (1034)
Q Consensus 73 VFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~ 152 (1034)
.-+|..+..+.++..|.+...+ ..|++-||.|+..+-+.|+..|-+
T Consensus 808 Yv~NrV~~Ie~~~~~L~~LVPE----------------------------------arI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 808 YVHNRVESIEKKAERLRELVPE----------------------------------ARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred EEecchhhHHHHHHHHHHhCCc----------------------------------eEEEEeecCCCHHHHHHHHHHHHc
Confidence 9999999999999999876432 228999999999999999999999
Q ss_pred CCcceEEeccccccccCCCCeEEEE-eccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccc
Q 001668 153 GDVQVLCTTNTLAHGINLPAHTVVI-KSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223 (1034)
Q Consensus 153 G~ikVLVaT~tLa~GVNLPav~vVI-~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~ 223 (1034)
|...|||||++.+-|||+|..+.+| .... -+..+++.|.-||.||.. ..|.||+++...
T Consensus 854 g~~dVLv~TTIIEtGIDIPnANTiIIe~AD----------~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~~ 913 (1139)
T COG1197 854 GEYDVLVCTTIIETGIDIPNANTIIIERAD----------KFGLAQLYQLRGRVGRSN--KQAYAYFLYPPQ 913 (1139)
T ss_pred CCCCEEEEeeeeecCcCCCCCceEEEeccc----------cccHHHHHHhccccCCcc--ceEEEEEeecCc
Confidence 9999999999999999999776655 3331 246899999999999985 899999998753
No 110
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.94 E-value=6.3e-09 Score=118.88 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=124.8
Q ss_pred CCCCcEEEEccCccC-HHHHHHHhCCCCCcEE-------------eccccceecchHHH---HH---H-HHHhhcCCCcE
Q 001668 13 LASVRFLAVSATIPN-IEDIAEWLNVPVQGIK-------------RFGEEMRPVKLTTK---VF---D-ILMQYSRGKSA 71 (1034)
Q Consensus 13 ~~~~riI~lSATlpn-~~dla~wL~~~~~~i~-------------~f~~~~Rpv~L~~~---v~---~-~l~~~~~~~~~ 71 (1034)
..++|++-.|||+-+ .+-..+.+|.+...+. .+.+...|..-..+ +. . .+.-...+-++
T Consensus 449 ~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~ 528 (1034)
T KOG4150|consen 449 SINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRC 528 (1034)
T ss_pred hcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcE
Confidence 457999999999987 4445556665432222 22333222211111 11 1 11224567899
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhh
Q 001668 72 LVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFL 151 (1034)
Q Consensus 72 LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~ 151 (1034)
|.||++|+-|+.+-...++.+.+.+. .| --.|..+.||-..+||+.||..+-
T Consensus 529 IAFC~~R~~CEL~~~~~R~I~~ET~~------------~L----------------V~~i~SYRGGY~A~DRRKIE~~~F 580 (1034)
T KOG4150|consen 529 IAFCPSRKLCELVLCLTREILAETAP------------HL----------------VEAITSYRGGYIAEDRRKIESDLF 580 (1034)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHhhH------------HH----------------HHHHHhhcCccchhhHHHHHHHhh
Confidence 99999999999887776666544331 11 112556889999999999999999
Q ss_pred cCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecc-ccHHHHH
Q 001668 152 KGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR-ETVHLYE 229 (1034)
Q Consensus 152 ~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~-~~~~~y~ 229 (1034)
.|++.-+|||+.|+.|||+....-|++-. .|+|.+.++|..|||||.. +...++.++.. .-.++|.
T Consensus 581 ~G~L~giIaTNALELGIDIG~LDAVl~~G----------FP~S~aNl~QQ~GRAGRRN--k~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 581 GGKLCGIIATNALELGIDIGHLDAVLHLG----------FPGSIANLWQQAGRAGRRN--KPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred CCeeeEEEecchhhhccccccceeEEEcc----------CchhHHHHHHHhccccccC--CCceEEEEEeccchhhHhh
Confidence 99999999999999999999999999877 8999999999999999986 66666655443 3334443
No 111
>PRK09401 reverse gyrase; Reviewed
Probab=98.93 E-value=2.3e-09 Score=138.88 Aligned_cols=146 Identities=22% Similarity=0.222 Sum_probs=93.1
Q ss_pred CCcEEEEccCccC--HHH--HHHHhCCCCC----cEEeccccceec-chHHHHHHHHHhhcCCCcEEEEcCCHHH---HH
Q 001668 15 SVRFLAVSATIPN--IED--IAEWLNVPVQ----GIKRFGEEMRPV-KLTTKVFDILMQYSRGKSALVFCSTRKG---AQ 82 (1034)
Q Consensus 15 ~~riI~lSATlpn--~~d--la~wL~~~~~----~i~~f~~~~Rpv-~L~~~v~~~l~~~~~~~~~LVFv~sRk~---~e 82 (1034)
..|++++|||++. ... +...++.... ...+....+-.+ .....+...+... +.++||||+|++. |+
T Consensus 268 ~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae 345 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDEDSVEKLVELVKRL--GDGGLIFVPSDKGKEYAE 345 (1176)
T ss_pred CceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcccHHHHHHHHHHhc--CCCEEEEEecccChHHHH
Confidence 7899999999974 222 2233322110 000111111112 1122233333333 4689999999877 88
Q ss_pred HHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe--
Q 001668 83 EAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT-- 160 (1034)
Q Consensus 83 ~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa-- 160 (1034)
.++..|... |. .++.+||+| .| .++.|++|.++||||
T Consensus 346 ~l~~~L~~~----gi--------------------------------~v~~~hg~l---~~--~l~~F~~G~~~VLVata 384 (1176)
T PRK09401 346 ELAEYLEDL----GI--------------------------------NAELAISGF---ER--KFEKFEEGEVDVLVGVA 384 (1176)
T ss_pred HHHHHHHHC----CC--------------------------------cEEEEeCcH---HH--HHHHHHCCCCCEEEEec
Confidence 888888654 22 278899999 23 349999999999999
Q ss_pred --ccccccccCCCC-eEEEEeccccccCCCCccccCCHHHHHHhccccCC
Q 001668 161 --TNTLAHGINLPA-HTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGR 207 (1034)
Q Consensus 161 --T~tLa~GVNLPa-v~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR 207 (1034)
|++++||||+|. +++||+++ -++.++.-.....+.||+||+-+
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~----vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYG----VPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeC----CCCEEEeccccccCHHHHHHHHh
Confidence 689999999999 89999865 22222111134668999999853
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.85 E-value=2.6e-08 Score=114.35 Aligned_cols=165 Identities=23% Similarity=0.295 Sum_probs=122.3
Q ss_pred CCCcEEEEccCccCHHHHHHHhC------CCCCcEEeccccceecchHH-HHHHHH-HhhcCCCcEEEEcCCHHHHHHHH
Q 001668 14 ASVRFLAVSATIPNIEDIAEWLN------VPVQGIKRFGEEMRPVKLTT-KVFDIL-MQYSRGKSALVFCSTRKGAQEAA 85 (1034)
Q Consensus 14 ~~~riI~lSATlpn~~dla~wL~------~~~~~i~~f~~~~Rpv~L~~-~v~~~l-~~~~~~~~~LVFv~sRk~~e~lA 85 (1034)
...|+|.+|||-++.+ +..-=| +.|.++..-....||..-+. .++.-+ .....+.++||-+-|++.|+.+.
T Consensus 385 ~~~q~i~VSATPg~~E-~e~s~~~vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT 463 (663)
T COG0556 385 KIPQTIYVSATPGDYE-LEQSGGNVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLT 463 (663)
T ss_pred hcCCEEEEECCCChHH-HHhccCceeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHH
Confidence 4579999999966533 222111 12223322223456654322 234444 34667899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEeccccc
Q 001668 86 QQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLA 165 (1034)
Q Consensus 86 ~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~tLa 165 (1034)
.+|.+.+. .|.|+|+.+..-+|..|.+.+|.|.+.|||--+.|-
T Consensus 464 ~Yl~e~gi------------------------------------kv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLR 507 (663)
T COG0556 464 EYLKELGI------------------------------------KVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (663)
T ss_pred HHHHhcCc------------------------------------eEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhh
Confidence 98876532 289999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccc
Q 001668 166 HGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE 223 (1034)
Q Consensus 166 ~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~ 223 (1034)
.|+|+|.+..|.- .|..+.+ +..|-..++|-+|||+|. -.|.+|++++.-
T Consensus 508 EGLDiPEVsLVAI----lDADKeG-FLRse~SLIQtIGRAARN---~~GkvIlYAD~i 557 (663)
T COG0556 508 EGLDLPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVILYADKI 557 (663)
T ss_pred ccCCCcceeEEEE----eecCccc-cccccchHHHHHHHHhhc---cCCeEEEEchhh
Confidence 9999999997763 4444444 346788899999999996 699999998653
No 113
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.83 E-value=3e-08 Score=122.63 Aligned_cols=179 Identities=18% Similarity=0.179 Sum_probs=117.8
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchH----------HHHHH-----HHHhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLT----------TKVFD-----ILMQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~----------~~v~~-----~l~~~~~~~~~LVFv~sRk~ 80 (1034)
++-||+.|... ..++.+..+.+. ..-+..+|+... ..-|. +...+..|.|+||||+|...
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~V----v~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLEV----VVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCCE----EECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 46788888764 566666666542 122333443211 11122 22346789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa 160 (1034)
++.++..|... |.. ...+||.+.+.+|..|.++|+.| .|+||
T Consensus 457 sE~ls~~L~~~----gi~--------------------------------h~vLnak~~q~Ea~iia~Ag~~G--~VtIA 498 (896)
T PRK13104 457 SEFLSQLLKKE----NIK--------------------------------HQVLNAKFHEKEAQIIAEAGRPG--AVTIA 498 (896)
T ss_pred HHHHHHHHHHc----CCC--------------------------------eEeecCCCChHHHHHHHhCCCCC--cEEEe
Confidence 99999998765 221 66789999999999999999999 49999
Q ss_pred ccccccccCCCCe--------------------------------------EEEEeccccccCCCCccccCCHHHHHHhc
Q 001668 161 TNTLAHGINLPAH--------------------------------------TVVIKSTQYFNKEKGLYMEHDRSTILQMC 202 (1034)
Q Consensus 161 T~tLa~GVNLPav--------------------------------------~vVI~~t~~y~~~~~~~~p~s~~~ylQmi 202 (1034)
|+.++||+||.=- .+|| +|. .+-|..-=.|..
T Consensus 499 TNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI-gTe---------rhesrRID~QLr 568 (896)
T PRK13104 499 TNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRII-GSE---------RHESRRIDNQLR 568 (896)
T ss_pred ccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEE-eec---------cCchHHHHHHhc
Confidence 9999999997411 1333 231 223344447999
Q ss_pred cccCCCCCCCccEEEEEeccccH-------HHHHHHhc-----Ccccccchhhhhhhhh
Q 001668 203 GRAGRPPFNDTGTVIIMTRRETV-------HLYENLLN-----GCEMVESQLLSCVTEH 249 (1034)
Q Consensus 203 GRAGR~g~d~~G~aiil~~~~~~-------~~y~~ll~-----~~~pieS~L~~~L~d~ 249 (1034)
|||||-| ..|.+-++.+=++. +...+++. ...||++.+.....+.
T Consensus 569 GRaGRQG--DPGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 625 (896)
T PRK13104 569 GRAGRQG--DPGSSRFYLSLEDNLMRIFASERVASMMRRLGMQPGEPIEHSLVTRAIEN 625 (896)
T ss_pred cccccCC--CCCceEEEEEcCcHHHHHhChHHHHHHHHHcCCCCCCcCcchHHHHHHHH
Confidence 9999988 78887766654431 11122221 2567787776654443
No 114
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.83 E-value=1.4e-08 Score=116.87 Aligned_cols=179 Identities=18% Similarity=0.266 Sum_probs=120.9
Q ss_pred CCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecchHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHHHHh
Q 001668 14 ASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAM 93 (1034)
Q Consensus 14 ~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v~~~l~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~ 93 (1034)
..+.+.|==|.++=++++++-.|... . .+......|..+.......+....+|. | |-|-||++...+-+.|.+.+
T Consensus 306 dEiHLCGepsvldlV~~i~k~TGd~v-e-v~~YeRl~pL~v~~~~~~sl~nlk~GD-C-vV~FSkk~I~~~k~kIE~~g- 380 (700)
T KOG0953|consen 306 DEIHLCGEPSVLDLVRKILKMTGDDV-E-VREYERLSPLVVEETALGSLSNLKPGD-C-VVAFSKKDIFTVKKKIEKAG- 380 (700)
T ss_pred hhhhccCCchHHHHHHHHHhhcCCee-E-EEeecccCcceehhhhhhhhccCCCCC-e-EEEeehhhHHHHHHHHHHhc-
Confidence 34444444344433444444444332 1 112223334443344444554554443 3 34557888887777776542
Q ss_pred hcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhc--CCcceEEeccccccccCCC
Q 001668 94 TYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLK--GDVQVLCTTNTLAHGINLP 171 (1034)
Q Consensus 94 ~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~--G~ikVLVaT~tLa~GVNLP 171 (1034)
..-+++++|+|+++.|..--.+|.+ +..+|||||+..+||+||.
T Consensus 381 ----------------------------------~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~ 426 (700)
T KOG0953|consen 381 ----------------------------------NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN 426 (700)
T ss_pred ----------------------------------CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc
Confidence 1228899999999999999999987 8999999999999999999
Q ss_pred CeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCC-CccEEEEEeccccHHHHHHHhcC
Q 001668 172 AHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFN-DTGTVIIMTRRETVHLYENLLNG 234 (1034)
Q Consensus 172 av~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d-~~G~aiil~~~~~~~~y~~ll~~ 234 (1034)
-.++|+.....|++.+- .+++++++.|.+|||||.|-. ..|.+..+ ..++..+.++.++.
T Consensus 427 IrRiiF~sl~Kysg~e~--~~it~sqikQIAGRAGRf~s~~~~G~vTtl-~~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 427 IRRIIFYSLIKYSGRET--EDITVSQIKQIAGRAGRFGSKYPQGEVTTL-HSEDLKLLKRILKR 487 (700)
T ss_pred eeEEEEeecccCCcccc--eeccHHHHHHHhhcccccccCCcCceEEEe-eHhhHHHHHHHHhC
Confidence 99999998888997664 789999999999999998632 34555544 34556666666664
No 115
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.82 E-value=3.6e-08 Score=121.83 Aligned_cols=179 Identities=20% Similarity=0.211 Sum_probs=117.8
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecch----------HHHHHHH----H-HhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKL----------TTKVFDI----L-MQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L----------~~~v~~~----l-~~~~~~~~~LVFv~sRk~ 80 (1034)
++.|||.|... ..++.+..+.+.. .-|..+|+.. ...-+.. + ..+..+.|+||||+|+..
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~vv----~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~ 442 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLDVV----VIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEK 442 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCCEE----EcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 57789999875 5666666665421 1122333221 1111222 2 234678999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa 160 (1034)
++.++..|... |.. ...+||. +.+|+....+|+.|...|+||
T Consensus 443 se~Ls~~L~~~----gi~--------------------------------~~vLnak--q~eREa~Iia~Ag~~g~VtIA 484 (830)
T PRK12904 443 SELLSKLLKKA----GIP--------------------------------HNVLNAK--NHEREAEIIAQAGRPGAVTIA 484 (830)
T ss_pred HHHHHHHHHHC----CCc--------------------------------eEeccCc--hHHHHHHHHHhcCCCceEEEe
Confidence 99999998764 221 5678885 789999999999999999999
Q ss_pred ccccccccCCCCe--------------------------------------EEEEeccccccCCCCccccCCHHHHHHhc
Q 001668 161 TNTLAHGINLPAH--------------------------------------TVVIKSTQYFNKEKGLYMEHDRSTILQMC 202 (1034)
Q Consensus 161 T~tLa~GVNLPav--------------------------------------~vVI~~t~~y~~~~~~~~p~s~~~ylQmi 202 (1034)
|+.++||+||+-- .+|| +| ..+-|..-=.|-.
T Consensus 485 TNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVi-gT---------erhesrRid~Qlr 554 (830)
T PRK12904 485 TNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVI-GT---------ERHESRRIDNQLR 554 (830)
T ss_pred cccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEE-ec---------ccCchHHHHHHhh
Confidence 9999999998642 1233 22 1344555557999
Q ss_pred cccCCCCCCCccEEEEEeccccH-------HHHHHHh-----cCcccccchhhhhhhhh
Q 001668 203 GRAGRPPFNDTGTVIIMTRRETV-------HLYENLL-----NGCEMVESQLLSCVTEH 249 (1034)
Q Consensus 203 GRAGR~g~d~~G~aiil~~~~~~-------~~y~~ll-----~~~~pieS~L~~~L~d~ 249 (1034)
|||||-| ..|.+-++.+-++. +...+++ .+..|+++.......++
T Consensus 555 GRagRQG--dpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 611 (830)
T PRK12904 555 GRSGRQG--DPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIEN 611 (830)
T ss_pred cccccCC--CCCceeEEEEcCcHHHHhhchHHHHHHHHHcCCCCCCccccHHHHHHHHH
Confidence 9999988 78888766654431 1112222 12457777776554443
No 116
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.81 E-value=4.3e-09 Score=110.40 Aligned_cols=57 Identities=26% Similarity=0.395 Sum_probs=51.4
Q ss_pred EEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHH
Q 001668 158 LCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVH 226 (1034)
Q Consensus 158 LVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~ 226 (1034)
||||+.++||+|+..+++||||+ .|-+..+|+||+|||||.| +.|.+|.+...+...
T Consensus 302 ~vat~lfgrgmdiervNi~~NYd----------mp~~~DtYlHrv~rAgrfG--tkglaitfvs~e~da 358 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYD----------MPEDSDTYLHRVARAGRFG--TKGLAITFVSDENDA 358 (387)
T ss_pred hHHhhhhccccCcccceeeeccC----------CCCCchHHHHHhhhhhccc--cccceeehhcchhhH
Confidence 89999999999999999999988 7889999999999999987 899999887765533
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=3.7e-08 Score=121.54 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=117.6
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchH----------HHHHHH-----HHhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLT----------TKVFDI-----LMQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~----------~~v~~~-----l~~~~~~~~~LVFv~sRk~ 80 (1034)
++-||+.|... ..++.+..+.+. ..-+..+|+... ..-|.. ...+..|.|+||||+|...
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~V----v~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLDT----VVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCCE----EECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 46688888775 555666665542 122334443211 111222 2345789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa 160 (1034)
++.++..|... |. ....+||.+++.+|..|.++|+.|. |+||
T Consensus 462 se~ls~~L~~~----gi--------------------------------~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIA 503 (908)
T PRK13107 462 SELLARLMVKE----KI--------------------------------PHEVLNAKFHEREAEIVAQAGRTGA--VTIA 503 (908)
T ss_pred HHHHHHHHHHC----CC--------------------------------CeEeccCcccHHHHHHHHhCCCCCc--EEEe
Confidence 99999888754 22 1567999999999999999999998 9999
Q ss_pred ccccccccCCCC-------------------------------------eEEEEeccccccCCCCccccCCHHHHHHhcc
Q 001668 161 TNTLAHGINLPA-------------------------------------HTVVIKSTQYFNKEKGLYMEHDRSTILQMCG 203 (1034)
Q Consensus 161 T~tLa~GVNLPa-------------------------------------v~vVI~~t~~y~~~~~~~~p~s~~~ylQmiG 203 (1034)
|+.++||+||.= =.+|| +|. .+-|..-=.|..|
T Consensus 504 TnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI-gTe---------rheSrRID~QLrG 573 (908)
T PRK13107 504 TNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHIL-GTE---------RHESRRIDNQLRG 573 (908)
T ss_pred cCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEE-ecc---------cCchHHHHhhhhc
Confidence 999999999751 12344 232 2223333469999
Q ss_pred ccCCCCCCCccEEEEEeccccH-------HHHHHHh-----cCcccccchhhhhhhhh
Q 001668 204 RAGRPPFNDTGTVIIMTRRETV-------HLYENLL-----NGCEMVESQLLSCVTEH 249 (1034)
Q Consensus 204 RAGR~g~d~~G~aiil~~~~~~-------~~y~~ll-----~~~~pieS~L~~~L~d~ 249 (1034)
||||-| ..|.+-++.+-++. +...+++ .+..+|++.+.....+.
T Consensus 574 RaGRQG--DPGss~f~lSlED~L~r~f~~~~~~~~~~~~~~~e~~~i~~~~~~~~i~~ 629 (908)
T PRK13107 574 RAGRQG--DAGSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIEN 629 (908)
T ss_pred ccccCC--CCCceeEEEEeCcHHHHHhChHHHHHHHHHcCCCCCCccccHHHHHHHHH
Confidence 999988 78888766654431 1112222 23577887776655544
No 118
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.70 E-value=7.2e-08 Score=120.97 Aligned_cols=162 Identities=23% Similarity=0.280 Sum_probs=113.5
Q ss_pred CCCcEEEEccCccC--HHHHHHHhCCCCCcEEe------ccccc--e--ecchHHH----HH-HHHHhhcCCCcEEEEcC
Q 001668 14 ASVRFLAVSATIPN--IEDIAEWLNVPVQGIKR------FGEEM--R--PVKLTTK----VF-DILMQYSRGKSALVFCS 76 (1034)
Q Consensus 14 ~~~riI~lSATlpn--~~dla~wL~~~~~~i~~------f~~~~--R--pv~L~~~----v~-~~l~~~~~~~~~LVFv~ 76 (1034)
.+..+|++|||+|. .+.+-..++........ .+... | ++.+... .. ........+++++|-||
T Consensus 369 ~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~N 448 (733)
T COG1203 369 AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVN 448 (733)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEe
Confidence 47899999999997 34444444432211111 01111 1 1111111 11 11245677899999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhh----c
Q 001668 77 TRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFL----K 152 (1034)
Q Consensus 77 sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~----~ 152 (1034)
|.+.|..+...|..... -+..+|+.+...+|...++.++ .
T Consensus 449 TV~~Aie~Y~~Lk~~~~------------------------------------~v~LlHSRf~~~dR~~ke~~l~~~~~~ 492 (733)
T COG1203 449 TVDRAIELYEKLKEKGP------------------------------------KVLLLHSRFTLKDREEKERELKKLFKQ 492 (733)
T ss_pred cHHHHHHHHHHHHhcCC------------------------------------CEEEEecccchhhHHHHHHHHHHHHhc
Confidence 99999999999876521 1788999999999998888554 5
Q ss_pred CCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecccc
Q 001668 153 GDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 153 G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~ 224 (1034)
+.-.|+|||.+.+.|||+. ..++|. .+-++..++||+||.+|-|-...|.++++.....
T Consensus 493 ~~~~IvVaTQVIEagvDid-fd~mIT------------e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 493 NEGFIVVATQVIEAGVDID-FDVLIT------------ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred cCCeEEEEeeEEEEEeccc-cCeeee------------cCCCHHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 6889999999999999997 566664 2346788999999999998667788888766543
No 119
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.66 E-value=6.2e-08 Score=125.95 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=66.0
Q ss_pred HHHHHHhhcCCCcEEEEcCCH---HHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEc
Q 001668 58 VFDILMQYSRGKSALVFCSTR---KGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYH 134 (1034)
Q Consensus 58 v~~~l~~~~~~~~~LVFv~sR---k~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~h 134 (1034)
+...+... +.++||||+|+ +.|+.++..|... | ..++.+
T Consensus 318 L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~----g--------------------------------~~a~~l 359 (1171)
T TIGR01054 318 LLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENH----G--------------------------------VKAVAY 359 (1171)
T ss_pred HHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhC----C--------------------------------ceEEEE
Confidence 34444433 56899999999 8999999888653 2 237899
Q ss_pred cCCCCHHHHHHHHHHhhcCCcceEEe----ccccccccCCCC-eEEEEecc
Q 001668 135 NGGLCLKDRNLIEGLFLKGDVQVLCT----TNTLAHGINLPA-HTVVIKST 180 (1034)
Q Consensus 135 H~gLs~~dR~~ve~~F~~G~ikVLVa----T~tLa~GVNLPa-v~vVI~~t 180 (1034)
||++++ .+++.|++|+++|||| |++++||||+|+ +++||+++
T Consensus 360 hg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~ 406 (1171)
T TIGR01054 360 HATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLG 406 (1171)
T ss_pred eCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEEC
Confidence 999973 6889999999999999 489999999999 89999865
No 120
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.59 E-value=9.5e-09 Score=125.25 Aligned_cols=133 Identities=27% Similarity=0.480 Sum_probs=108.7
Q ss_pred hcCCCCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecchHHHH-------------------HHHHHhhcCCCc
Q 001668 10 SSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-------------------FDILMQYSRGKS 70 (1034)
Q Consensus 10 ~~~~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v-------------------~~~l~~~~~~~~ 70 (1034)
......+|++++|.-+.|+.|+|+||+.+.. ++|.+..||+|+..++ |..+..+++.+|
T Consensus 1078 ~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p 1155 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKP 1155 (1230)
T ss_pred cccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCc
Confidence 3446789999999999999999999999876 8899999999987654 566777888999
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 71 ~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
+|||+.+|+++...|..|...+........|+..+ ..++........|..|+-++.+|+|.||+||...||..+
T Consensus 1156 ~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1156 VLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred eEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 99999999999999998877654434444555544 445555556778999999999999999999999998754
No 121
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.32 E-value=2.7e-06 Score=110.28 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=79.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhc-CCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTY-GYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~-g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
++++||||.++..|+.++..|.+.+... +.. -...+..+||+.+ +|..+
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~----------------------------~~~~v~~itg~~~--~~~~l 747 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQV----------------------------EDDAVIKITGSID--KPDQL 747 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCc----------------------------CccceEEEeCCcc--chHHH
Confidence 4789999999999999998887653211 000 0112555788875 56789
Q ss_pred HHHhhcCCc-ceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCC
Q 001668 147 EGLFLKGDV-QVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPP 209 (1034)
Q Consensus 147 e~~F~~G~i-kVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g 209 (1034)
++.|+++.. +|+|+++.|..|+|+|.+.+||... .+.|...|+||+||+.|..
T Consensus 748 i~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~r----------pvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 748 IRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLR----------RVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred HHHHhCCCCCeEEEEecccccCCCcccccEEEEec----------CCCCHHHHHHHHhhhccCC
Confidence 999999987 7999999999999999999988644 3468899999999999974
No 122
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.28 E-value=5.1e-06 Score=98.71 Aligned_cols=95 Identities=29% Similarity=0.382 Sum_probs=82.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.+.++||||.....+..++..+... -++..+.+..+..+|..+
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~-------------------------------------~~~~~it~~t~~~eR~~i 324 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAP-------------------------------------GIVEAITGETPKEEREAI 324 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCC-------------------------------------CceEEEECCCCHHHHHHH
Confidence 5789999999999999988877432 115678899999999999
Q ss_pred HHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCC
Q 001668 147 EGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRP 208 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~ 208 (1034)
.+.|+.|.+++||++.++..|+|+|++.++|.-. ..-|...|.||+||.=|+
T Consensus 325 l~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~----------~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 325 LERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR----------PTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC----------CCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999644 234789999999999996
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.15 E-value=2e-05 Score=100.97 Aligned_cols=183 Identities=19% Similarity=0.258 Sum_probs=112.8
Q ss_pred CCcEEEEccCcc---CHHHHHHHhCCCCCcEEec-----c--c-------cceecc---hHHHHH----HHHHh--hcCC
Q 001668 15 SVRFLAVSATIP---NIEDIAEWLNVPVQGIKRF-----G--E-------EMRPVK---LTTKVF----DILMQ--YSRG 68 (1034)
Q Consensus 15 ~~riI~lSATlp---n~~dla~wL~~~~~~i~~f-----~--~-------~~Rpv~---L~~~v~----~~l~~--~~~~ 68 (1034)
...+|++||||. +.+-+++.+|.+......+ + . ..-|.+ -...+. ..+.. ...+
T Consensus 595 ~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~ 674 (850)
T TIGR01407 595 FKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITS 674 (850)
T ss_pred CCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 457899999998 5778888999753221111 1 0 001111 011111 12211 2245
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHH
Q 001668 69 KSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEG 148 (1034)
Q Consensus 69 ~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~ 148 (1034)
+++|||++|.+..+.++..|...... .|+..+..+.. ..|..+.+
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~----------------------------------~~~~~l~q~~~-~~r~~ll~ 719 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEF----------------------------------EGYEVLAQGIN-GSRAKIKK 719 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccc----------------------------------cCceEEecCCC-ccHHHHHH
Confidence 78999999999999999888642111 11222333333 57889999
Q ss_pred HhhcCCcceEEeccccccccCCCCeE---EEEeccccccCCC----------------Ccc----ccCCHHHHHHhcccc
Q 001668 149 LFLKGDVQVLCTTNTLAHGINLPAHT---VVIKSTQYFNKEK----------------GLY----MEHDRSTILQMCGRA 205 (1034)
Q Consensus 149 ~F~~G~ikVLVaT~tLa~GVNLPav~---vVI~~t~~y~~~~----------------~~~----~p~s~~~ylQmiGRA 205 (1034)
.|++|.-.||++|+.+++|||+|+.. |||-+ -+|.++. ..| .|.-+..+.|-+||.
T Consensus 720 ~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~-LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRl 798 (850)
T TIGR01407 720 RFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPR-LPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRL 798 (850)
T ss_pred HHHhCCCeEEEEcceeecccccCCCceEEEEEeC-CCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccc
Confidence 99999999999999999999999754 44533 2443221 112 233457789999999
Q ss_pred CCCCCCCccEEEEEeccccHHHH-HHHhcC
Q 001668 206 GRPPFNDTGTVIIMTRRETVHLY-ENLLNG 234 (1034)
Q Consensus 206 GR~g~d~~G~aiil~~~~~~~~y-~~ll~~ 234 (1034)
=|.. ++.|.++++-..-....| +.++..
T Consensus 799 IRs~-~D~G~v~ilD~R~~~~~Yg~~~~~s 827 (850)
T TIGR01407 799 IRRE-NDRGSIVILDRRLVGKRYGKRFEKS 827 (850)
T ss_pred cccC-CceEEEEEEccccccchHHHHHHHh
Confidence 9986 457877777555333445 444443
No 124
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.06 E-value=1.5e-05 Score=101.98 Aligned_cols=84 Identities=24% Similarity=0.185 Sum_probs=67.8
Q ss_pred cceEEccCCCCHHHHHHHHHHhhc---CCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhcccc
Q 001668 129 YGVGYHNGGLCLKDRNLIEGLFLK---GDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRA 205 (1034)
Q Consensus 129 ~GV~~hH~gLs~~dR~~ve~~F~~---G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRA 205 (1034)
.+...+||+++..+|..+.+.|.+ +..-+|++|.+.+.||||...++||.++ .+-++....|++||+
T Consensus 512 ~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD----------~dWNP~~d~QAidRa 581 (1033)
T PLN03142 512 YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYD----------SDWNPQVDLQAQDRA 581 (1033)
T ss_pred CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeC----------CCCChHHHHHHHHHh
Confidence 346778999999999999999974 3356789999999999999999999877 445678899999999
Q ss_pred CCCCCCCccEEEEEecc
Q 001668 206 GRPPFNDTGTVIIMTRR 222 (1034)
Q Consensus 206 GR~g~d~~G~aiil~~~ 222 (1034)
-|-|..+.-.++-++..
T Consensus 582 HRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 582 HRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred hhcCCCceEEEEEEEeC
Confidence 99996555445533333
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.86 E-value=0.00027 Score=87.40 Aligned_cols=178 Identities=15% Similarity=0.192 Sum_probs=101.8
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecch-----------HHHH---HHHH-HhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKL-----------TTKV---FDIL-MQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L-----------~~~v---~~~l-~~~~~~~~~LVFv~sRk~ 80 (1034)
++-||+.|... ..++.+-.+.+. ..-+..+|+.. ..++ ...+ ..+..|.|+||.|.|...
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~V----v~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~ 438 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMRV----NVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVED 438 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCCE----EECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 46788888764 445555555442 12233333221 1121 1212 345789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcC-CcceEE
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKG-DVQVLC 159 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G-~ikVLV 159 (1034)
++.++..|.+. |.. ...++|.-...+-..|- ..| .-.|.|
T Consensus 439 SE~ls~~L~~~----gi~--------------------------------h~vLNAk~~e~EA~IIa---~AG~~GaVTI 479 (925)
T PRK12903 439 SETLHELLLEA----NIP--------------------------------HTVLNAKQNAREAEIIA---KAGQKGAITI 479 (925)
T ss_pred HHHHHHHHHHC----CCC--------------------------------ceeecccchhhHHHHHH---hCCCCCeEEE
Confidence 99999999764 221 11233432222333332 234 346889
Q ss_pred eccccccccCCCCeE--------EEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccH------
Q 001668 160 TTNTLAHGINLPAHT--------VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV------ 225 (1034)
Q Consensus 160 aT~tLa~GVNLPav~--------vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~------ 225 (1034)
||+.++||.||.--. +||- |. .+-+..-=-|..|||||-| ..|.+-++.+-++.
T Consensus 480 ATNMAGRGTDI~Lg~~V~~~GGLhVIg-Te---------rheSrRIDnQLrGRaGRQG--DpGss~f~lSLeD~L~r~f~ 547 (925)
T PRK12903 480 ATNMAGRGTDIKLSKEVLELGGLYVLG-TD---------KAESRRIDNQLRGRSGRQG--DVGESRFFISLDDQLFRRFS 547 (925)
T ss_pred ecccccCCcCccCchhHHHcCCcEEEe-cc---------cCchHHHHHHHhcccccCC--CCCcceEEEecchHHHHHhC
Confidence 999999999985321 4552 31 2233333459999999988 78877665544331
Q ss_pred --HHHHHHhcC--cccccchhhhhhhhh
Q 001668 226 --HLYENLLNG--CEMVESQLLSCVTEH 249 (1034)
Q Consensus 226 --~~y~~ll~~--~~pieS~L~~~L~d~ 249 (1034)
+.+.+++.. ..||++.+.....+.
T Consensus 548 ~~~ri~~~~~~l~~~~i~~~~i~~~ie~ 575 (925)
T PRK12903 548 NFDKIKEAFKKLGDDEIKSKFFSKALLN 575 (925)
T ss_pred CHHHHHHHHHhcCCCcccchHHHHHHHH
Confidence 122333322 347888776655444
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.77 E-value=0.00031 Score=85.86 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=105.9
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchH----------HHHHH-----HHHhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLT----------TKVFD-----ILMQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~----------~~v~~-----~l~~~~~~~~~LVFv~sRk~ 80 (1034)
++-||+.|... .+++.+..+.+. . .-+..+|+... ..-+. +...+..|.|+||.+.|...
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~V---v-~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLGV---S-VIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCcE---E-ECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 57899999875 677777777653 1 22333443211 11122 22346789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa 160 (1034)
.+.++..|.+... . .-.++|.-...+-..|-++=+.| .|.||
T Consensus 440 SE~ls~~L~~~gI----~--------------------------------h~vLNAk~~~~EA~IIa~AG~~g--aVTIA 481 (764)
T PRK12326 440 SEELAERLRAAGV----P--------------------------------AVVLNAKNDAEEARIIAEAGKYG--AVTVS 481 (764)
T ss_pred HHHHHHHHHhCCC----c--------------------------------ceeeccCchHhHHHHHHhcCCCC--cEEEE
Confidence 9999999876521 1 12234443333333333333333 68899
Q ss_pred ccccccccCCCC---------------eEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccH
Q 001668 161 TNTLAHGINLPA---------------HTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV 225 (1034)
Q Consensus 161 T~tLa~GVNLPa---------------v~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~ 225 (1034)
|+.++||.||.- =.+|| +|. .+-|..-=.|-.|||||-| ..|.+-++.+-++.
T Consensus 482 TNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVI-gTe---------rheSrRID~QLrGRaGRQG--DpGss~f~lSleDd 549 (764)
T PRK12326 482 TQMAGRGTDIRLGGSDEADRDRVAELGGLHVI-GTG---------RHRSERLDNQLRGRAGRQG--DPGSSVFFVSLEDD 549 (764)
T ss_pred ecCCCCccCeecCCCcccchHHHHHcCCcEEE-ecc---------CCchHHHHHHHhcccccCC--CCCceeEEEEcchh
Confidence 999999998741 12444 231 3345555679999999988 78887766654331
Q ss_pred HHHHH------H---hcCcccccchhhhhhhhh
Q 001668 226 HLYEN------L---LNGCEMVESQLLSCVTEH 249 (1034)
Q Consensus 226 ~~y~~------l---l~~~~pieS~L~~~L~d~ 249 (1034)
++.. . +.+..||++.+.....++
T Consensus 550 -l~~~f~~~~~~~~~~~~~~~i~~~~~~~~i~~ 581 (764)
T PRK12326 550 -VVAANLAGEKLPAQPDEDGRITSPKAADLVDH 581 (764)
T ss_pred -HHHhcCchhhhhcCCCCCCcCcChhHHHHHHH
Confidence 1111 1 122566777766555544
No 127
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.65 E-value=0.00045 Score=86.46 Aligned_cols=180 Identities=17% Similarity=0.166 Sum_probs=106.8
Q ss_pred CcEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecch----------HHHHH-----HHHHhhcCCCcEEEEcCCHH
Q 001668 16 VRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKL----------TTKVF-----DILMQYSRGKSALVFCSTRK 79 (1034)
Q Consensus 16 ~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L----------~~~v~-----~~l~~~~~~~~~LVFv~sRk 79 (1034)
.++.||+.|... ..++.+..+.+. ..-+..+|+.. ...-+ .....+..|.|+||-|.|..
T Consensus 504 ~kl~GmTGTa~~e~~Ef~~iY~l~v----~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~ 579 (970)
T PRK12899 504 EKLAGMTGTAITESREFKEIYNLYV----LQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVE 579 (970)
T ss_pred chhcccCCCCHHHHHHHHHHhCCCE----EECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 367899999875 566666666542 12233344321 11112 22345678999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEE
Q 001668 80 GAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLC 159 (1034)
Q Consensus 80 ~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLV 159 (1034)
..+.++..|.+.. .. ...+++.-...+-..|-++=+. -.|.|
T Consensus 580 ~se~ls~~L~~~g----i~--------------------------------h~vLNak~~~~Ea~iia~AG~~--g~VTI 621 (970)
T PRK12899 580 VSEKLSRILRQNR----IE--------------------------------HTVLNAKNHAQEAEIIAGAGKL--GAVTV 621 (970)
T ss_pred HHHHHHHHHHHcC----Cc--------------------------------ceecccchhhhHHHHHHhcCCC--CcEEE
Confidence 9999999887642 11 1122333223333333333333 36889
Q ss_pred eccccccccCCCCe--------EEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccH------
Q 001668 160 TTNTLAHGINLPAH--------TVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV------ 225 (1034)
Q Consensus 160 aT~tLa~GVNLPav--------~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~------ 225 (1034)
||+.++||.||.-- .+|| +| ..+.+..--.|..|||||-| ..|.+.++.+-++.
T Consensus 622 ATNmAGRGTDIkl~~~v~~~GGLhVI-gT---------er~es~Rid~Ql~GRagRQG--dpGss~f~lSlEDdL~~~f~ 689 (970)
T PRK12899 622 ATNMAGRGTDIKLDEEAVAVGGLYVI-GT---------SRHQSRRIDRQLRGRCARLG--DPGAAKFFLSFEDRLMRLFA 689 (970)
T ss_pred eeccccCCcccccCchHHhcCCcEEE-ee---------ccCchHHHHHHHhcccccCC--CCCceeEEEEcchHHHHHhC
Confidence 99999999997421 2344 23 23456666789999999988 78888766654431
Q ss_pred -HHHHHH-----hcCcccccchhhhhhhhh
Q 001668 226 -HLYENL-----LNGCEMVESQLLSCVTEH 249 (1034)
Q Consensus 226 -~~y~~l-----l~~~~pieS~L~~~L~d~ 249 (1034)
+...++ +....||++.+...+.++
T Consensus 690 ~~~i~~~~~~~~~~~~~~I~~~~~~~~i~~ 719 (970)
T PRK12899 690 SPKLNTLIRHFRPPEGEAMSDPMFNRLIET 719 (970)
T ss_pred cHHHHHHHHHcCCCCCCccccHHHHHHHHH
Confidence 111122 223567777776554443
No 128
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.47 E-value=0.0009 Score=84.14 Aligned_cols=179 Identities=17% Similarity=0.226 Sum_probs=108.0
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchH----------HHHHHH-----HHhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLT----------TKVFDI-----LMQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~----------~~v~~~-----l~~~~~~~~~LVFv~sRk~ 80 (1034)
.+-||+.|... ..++.+-.+.+. ..-+..||+.-. ..-|.. ...+..|+|+||-+.|...
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~V----v~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~ 640 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDV----VVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEI 640 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCE----EECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHH
Confidence 45678888764 566666665542 122333443211 111222 2346789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa 160 (1034)
.+.++..|.... ... ..++|.....+-..|-++=+.| .|-||
T Consensus 641 SE~lS~~L~~~g----I~H--------------------------------~VLNAK~h~~EAeIVA~AG~~G--aVTIA 682 (1112)
T PRK12901 641 SELLSRMLKMRK----IPH--------------------------------NVLNAKLHQKEAEIVAEAGQPG--TVTIA 682 (1112)
T ss_pred HHHHHHHHHHcC----CcH--------------------------------HHhhccchhhHHHHHHhcCCCC--cEEEe
Confidence 999999887652 110 1123333344555555544445 57899
Q ss_pred ccccccccCCC--------CeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccH-------
Q 001668 161 TNTLAHGINLP--------AHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETV------- 225 (1034)
Q Consensus 161 T~tLa~GVNLP--------av~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~------- 225 (1034)
|+.++||.||. .=.+|| +|. .+-|..--.|..|||||-| ..|.+-++.+=++.
T Consensus 683 TNMAGRGTDIkLg~~V~e~GGL~VI-gTe---------rheSrRID~QLrGRaGRQG--DPGsS~f~lSLEDdLmr~Fgs 750 (1112)
T PRK12901 683 TNMAGRGTDIKLSPEVKAAGGLAII-GTE---------RHESRRVDRQLRGRAGRQG--DPGSSQFYVSLEDNLMRLFGS 750 (1112)
T ss_pred ccCcCCCcCcccchhhHHcCCCEEE-Ecc---------CCCcHHHHHHHhcccccCC--CCCcceEEEEcccHHHHhhCc
Confidence 99999999986 223444 231 3446666689999999988 78887766554331
Q ss_pred HHHHHHh-----cCcccccchhhhhhhhh
Q 001668 226 HLYENLL-----NGCEMVESQLLSCVTEH 249 (1034)
Q Consensus 226 ~~y~~ll-----~~~~pieS~L~~~L~d~ 249 (1034)
+...+++ .+.++|++.+.....+.
T Consensus 751 ~ri~~~m~~~g~~ege~I~~~~i~ksIe~ 779 (1112)
T PRK12901 751 ERIAKVMDRMGLKEGEVIQHSMISKSIER 779 (1112)
T ss_pred HHHHHHHHHcCCCCCCccccHHHHHHHHH
Confidence 1112222 23568888876655444
No 129
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.24 E-value=0.0024 Score=82.84 Aligned_cols=185 Identities=20% Similarity=0.228 Sum_probs=112.3
Q ss_pred CCCcEEEEccCcc---CHHHHHHHhCCCCCc--EEeccc-------------cceecc---hHHHHH----HHHHh--hc
Q 001668 14 ASVRFLAVSATIP---NIEDIAEWLNVPVQG--IKRFGE-------------EMRPVK---LTTKVF----DILMQ--YS 66 (1034)
Q Consensus 14 ~~~riI~lSATlp---n~~dla~wL~~~~~~--i~~f~~-------------~~Rpv~---L~~~v~----~~l~~--~~ 66 (1034)
....+|++||||. +..-+++.+|.+... ...+.. ..-|.+ -...+. ..+.. ..
T Consensus 671 ~~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~ 750 (928)
T PRK08074 671 KKKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA 750 (928)
T ss_pred cCCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 3467899999998 356677888875311 111111 101111 011221 12221 23
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.++++|||++|.+.-+.++..|...... .++..+--|+....|..+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~----------------------------------~~~~ll~Qg~~~~~r~~l 796 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEEL----------------------------------EGYVLLAQGVSSGSRARL 796 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccc----------------------------------cCceEEecCCCCCCHHHH
Confidence 4679999999999999998888643110 011111224444568889
Q ss_pred HHHhhcCCcceEEeccccccccCCCCe---EEEEeccccccCCC--------------C--cc----ccCCHHHHHHhcc
Q 001668 147 EGLFLKGDVQVLCTTNTLAHGINLPAH---TVVIKSTQYFNKEK--------------G--LY----MEHDRSTILQMCG 203 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~tLa~GVNLPav---~vVI~~t~~y~~~~--------------~--~~----~p~s~~~ylQmiG 203 (1034)
.+.|+++.-.||++|..+..|||+|+- .|||-.- +|.++. | .| .|.-+..+.|-+|
T Consensus 797 ~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kL-PF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~G 875 (928)
T PRK08074 797 TKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRL-PFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFG 875 (928)
T ss_pred HHHHHhcCCeEEEecCcccCccccCCCceEEEEEecC-CCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhh
Confidence 999999888899999999999999973 4555442 453221 1 12 2334567899999
Q ss_pred ccCCCCCCCccEEEEEeccccHHHH-HHHhcC
Q 001668 204 RAGRPPFNDTGTVIIMTRRETVHLY-ENLLNG 234 (1034)
Q Consensus 204 RAGR~g~d~~G~aiil~~~~~~~~y-~~ll~~ 234 (1034)
|.=|.. +..|.++++-..-....| +.+++.
T Consensus 876 RlIRs~-~D~G~v~ilD~R~~~k~Yg~~~l~s 906 (928)
T PRK08074 876 RLIRTE-TDRGTVFVLDRRLTTTSYGKYFLES 906 (928)
T ss_pred hhcccC-CceEEEEEecCccccchHHHHHHHh
Confidence 999986 457877777655333334 555554
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.23 E-value=0.0023 Score=80.16 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=92.8
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchH----------HHHHHH-----HHhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLT----------TKVFDI-----LMQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~----------~~v~~~-----l~~~~~~~~~LVFv~sRk~ 80 (1034)
++-||+.|... ..++....+.+. ..-+..+|+... ...|.. ...+..|.|+||-+.|...
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~V----v~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLDV----VVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCCE----EECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 56788888875 566666666553 122344443321 111222 2346789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEe
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVa 160 (1034)
.+.++..|...... . -.+++.-...+-..|-++=+.| .|.||
T Consensus 462 SE~ls~~L~~~gi~----h--------------------------------~VLNAk~~~~EA~IIa~AG~~G--aVTIA 503 (913)
T PRK13103 462 SEHMSNLLKKEGIE----H--------------------------------KVLNAKYHEKEAEIIAQAGRPG--ALTIA 503 (913)
T ss_pred HHHHHHHHHHcCCc----H--------------------------------HHhccccchhHHHHHHcCCCCC--cEEEe
Confidence 99999998765221 0 0122332233334444333333 68899
Q ss_pred ccccccccCCC-------------------------------------CeEEEEeccccccCCCCccccCCHHHHHHhcc
Q 001668 161 TNTLAHGINLP-------------------------------------AHTVVIKSTQYFNKEKGLYMEHDRSTILQMCG 203 (1034)
Q Consensus 161 T~tLa~GVNLP-------------------------------------av~vVI~~t~~y~~~~~~~~p~s~~~ylQmiG 203 (1034)
|+.++||.||. .=.+|| +|. .+-|..-=.|-.|
T Consensus 504 TNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVI-gTe---------rheSrRID~QLrG 573 (913)
T PRK13103 504 TNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVI-ASE---------RHESRRIDNQLRG 573 (913)
T ss_pred ccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEE-eec---------cCchHHHHHHhcc
Confidence 99999999983 112344 231 2334444479999
Q ss_pred ccCCCCCCCccEEEEEecccc
Q 001668 204 RAGRPPFNDTGTVIIMTRRET 224 (1034)
Q Consensus 204 RAGR~g~d~~G~aiil~~~~~ 224 (1034)
||||-| ..|.+-++.+-++
T Consensus 574 RaGRQG--DPGsS~f~lSlED 592 (913)
T PRK13103 574 RAGRQG--DPGSSRFYLSLED 592 (913)
T ss_pred ccccCC--CCCceEEEEEcCc
Confidence 999988 7888876665433
No 131
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0019 Score=80.92 Aligned_cols=127 Identities=21% Similarity=0.338 Sum_probs=83.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
++.+|||++|.+..+.++..+...... . ....+|. ..+....
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~-------~----------------------------~v~~q~~---~~~~~~l 520 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERST-------L----------------------------PVLTQGE---DEREELL 520 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCcc-------c----------------------------eeeecCC---CcHHHHH
Confidence 458999999999998888887653110 0 1122333 3344666
Q ss_pred HHhhcCCc-ceEEeccccccccCCCCe---EEEEeccccccCC--------------CC------ccccCCHHHHHHhcc
Q 001668 148 GLFLKGDV-QVLCTTNTLAHGINLPAH---TVVIKSTQYFNKE--------------KG------LYMEHDRSTILQMCG 203 (1034)
Q Consensus 148 ~~F~~G~i-kVLVaT~tLa~GVNLPav---~vVI~~t~~y~~~--------------~~------~~~p~s~~~ylQmiG 203 (1034)
+.|+.+.= -++|+|..++.|||+|.. .|||-+- .|-.. .| .+.|.-+..+.|-+|
T Consensus 521 ~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~l-Pfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavG 599 (654)
T COG1199 521 EKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGL-PFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVG 599 (654)
T ss_pred HHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEec-CCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhc
Confidence 66764433 899999999999999975 4566442 33211 11 235556788999999
Q ss_pred ccCCCCCCCccEEEEEeccccHHHHHHHhcC
Q 001668 204 RAGRPPFNDTGTVIIMTRRETVHLYENLLNG 234 (1034)
Q Consensus 204 RAGR~g~d~~G~aiil~~~~~~~~y~~ll~~ 234 (1034)
|.=|.. +..|.++|+-..-....|.+.+..
T Consensus 600 RlIR~~-~D~G~ivllD~R~~~~~y~~~l~~ 629 (654)
T COG1199 600 RLIRSE-DDRGVIVLLDKRYATKRYGKLLLD 629 (654)
T ss_pred cccccC-CCceEEEEecccchhhhHHHHHHH
Confidence 999964 678888888665444445555444
No 132
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.81 E-value=0.017 Score=72.83 Aligned_cols=179 Identities=22% Similarity=0.314 Sum_probs=104.5
Q ss_pred CCcEEEEccCccC---HHHHHHHhCCCC---CcEEecc-------------ccceecc-hHHHHH----HHHH-hhcCCC
Q 001668 15 SVRFLAVSATIPN---IEDIAEWLNVPV---QGIKRFG-------------EEMRPVK-LTTKVF----DILM-QYSRGK 69 (1034)
Q Consensus 15 ~~riI~lSATlpn---~~dla~wL~~~~---~~i~~f~-------------~~~Rpv~-L~~~v~----~~l~-~~~~~~ 69 (1034)
...+|++||||.. ...+.+.+|.+. .....+. +...|.| -....+ ..+. ....++
T Consensus 456 ~~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~~~g 535 (697)
T PRK11747 456 APGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLEKHK 535 (697)
T ss_pred CCEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Confidence 3568999999984 466677788753 1111111 1111122 111121 1121 111344
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHH
Q 001668 70 SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGL 149 (1034)
Q Consensus 70 ~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~ 149 (1034)
.+|||++|.+..+.++..|.... +. -+ +.+|. ..|..+.+.
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~---~~--------------------------------~l-l~Q~~---~~~~~ll~~ 576 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDL---RL--------------------------------ML-LVQGD---QPRQRLLEK 576 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhc---CC--------------------------------cE-EEeCC---chHHHHHHH
Confidence 58999999999998888775421 10 02 22343 246677766
Q ss_pred hh----cCCcceEEeccccccccCCCC---eEEEEeccccccCCC--------------C--cc----ccCCHHHHHHhc
Q 001668 150 FL----KGDVQVLCTTNTLAHGINLPA---HTVVIKSTQYFNKEK--------------G--LY----MEHDRSTILQMC 202 (1034)
Q Consensus 150 F~----~G~ikVLVaT~tLa~GVNLPa---v~vVI~~t~~y~~~~--------------~--~~----~p~s~~~ylQmi 202 (1034)
|+ .|.-.||++|..+..|||+|+ ..|||-+- +|.++. | .| .|.-...+.|-+
T Consensus 577 f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kL-PF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~ 655 (697)
T PRK11747 577 HKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKI-PFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAV 655 (697)
T ss_pred HHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcC-CCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 76 367789999999999999996 34555442 443221 1 11 233456789999
Q ss_pred cccCCCCCCCccEEEEEecccc-HHHHHHHhcC
Q 001668 203 GRAGRPPFNDTGTVIIMTRRET-VHLYENLLNG 234 (1034)
Q Consensus 203 GRAGR~g~d~~G~aiil~~~~~-~~~y~~ll~~ 234 (1034)
||.=|.. ++.|..+++-..-. ..|-+.+++.
T Consensus 656 GRlIRs~-~D~G~i~ilD~R~~~~~Yg~~~l~s 687 (697)
T PRK11747 656 GRLIRSE-QDRGRVTILDRRLLTKRYGKRLLDA 687 (697)
T ss_pred ccccccC-CceEEEEEEcccccchhHHHHHHHh
Confidence 9999975 45787777755533 3344555554
No 133
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.79 E-value=0.029 Score=70.35 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=46.2
Q ss_pred CcEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchH----------HHHHH-----HHHhhcCCCcEEEEcCCHH
Q 001668 16 VRFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLT----------TKVFD-----ILMQYSRGKSALVFCSTRK 79 (1034)
Q Consensus 16 ~riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~----------~~v~~-----~l~~~~~~~~~LVFv~sRk 79 (1034)
.++-||+.|... ..++.+..+.+. ..-+..+|+... ..-|. +...+..|.|+||-+.|..
T Consensus 375 ~kLsGMTGTa~te~~Ef~~iY~l~V----v~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe 450 (939)
T PRK12902 375 PKLAGMTGTAKTEEVEFEKTYKLEV----TVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVE 450 (939)
T ss_pred chhcccCCCCHHHHHHHHHHhCCcE----EEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHH
Confidence 367789999765 555766666543 122333433211 11122 2234678999999999999
Q ss_pred HHHHHHHHHHHH
Q 001668 80 GAQEAAQQLSQT 91 (1034)
Q Consensus 80 ~~e~lA~~L~~~ 91 (1034)
..+.++..|...
T Consensus 451 ~SE~ls~~L~~~ 462 (939)
T PRK12902 451 KSELLSALLQEQ 462 (939)
T ss_pred HHHHHHHHHHHc
Confidence 999999998765
No 134
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.016 Score=72.00 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=63.0
Q ss_pred HHHHHHHhhcCCcceEEeccccccccCCCCeEEEE--eccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEe
Q 001668 143 RNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVI--KSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220 (1034)
Q Consensus 143 R~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI--~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~ 220 (1034)
-+..+..|.+|.+.|||-|..+|-|.|+|+++.|. +.+.......-+-.+....-+.|-+|||||.+ ..|.++|-|
T Consensus 523 ~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT 600 (730)
T COG1198 523 LEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQT 600 (730)
T ss_pred HHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEe
Confidence 35678899999999999999999999999998654 33322222222223445677899999999985 899999988
Q ss_pred ccccHHHHHH
Q 001668 221 RRETVHLYEN 230 (1034)
Q Consensus 221 ~~~~~~~y~~ 230 (1034)
...+....+.
T Consensus 601 ~~P~hp~i~~ 610 (730)
T COG1198 601 YNPDHPAIQA 610 (730)
T ss_pred CCCCcHHHHH
Confidence 7766544443
No 135
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.69 E-value=0.047 Score=68.54 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=67.9
Q ss_pred cEEEEccCccC-HHHHHHHhCCCCCcEEeccccceecchH-----------HHH----HHHHHhhcCCCcEEEEcCCHHH
Q 001668 17 RFLAVSATIPN-IEDIAEWLNVPVQGIKRFGEEMRPVKLT-----------TKV----FDILMQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 17 riI~lSATlpn-~~dla~wL~~~~~~i~~f~~~~Rpv~L~-----------~~v----~~~l~~~~~~~~~LVFv~sRk~ 80 (1034)
++.||+.|... ..++.+..+.+. ..-|..+|+... .+. -.....+..|.|+||-|.|...
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~v----v~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~ 436 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLEV----VCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEK 436 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCE----EECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHH
Confidence 57899999875 556666666543 122333433211 111 1223456789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCC--CHHHHHHHHHHhhcCCcceE
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGL--CLKDRNLIEGLFLKGDVQVL 158 (1034)
Q Consensus 81 ~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gL--s~~dR~~ve~~F~~G~ikVL 158 (1034)
.+.++..|.+.. .. .-.++|.- ...+-..|-++=+. -.|.
T Consensus 437 SE~ls~~L~~~g----i~--------------------------------h~vLNAk~~~~~~EA~IIA~AG~~--G~VT 478 (870)
T CHL00122 437 SELLSQLLKEYR----LP--------------------------------HQLLNAKPENVRRESEIVAQAGRK--GSIT 478 (870)
T ss_pred HHHHHHHHHHcC----Cc--------------------------------cceeeCCCccchhHHHHHHhcCCC--CcEE
Confidence 999999887652 21 12234431 12333344333233 3688
Q ss_pred EeccccccccCC
Q 001668 159 CTTNTLAHGINL 170 (1034)
Q Consensus 159 VaT~tLa~GVNL 170 (1034)
|||+.++||.||
T Consensus 479 IATNMAGRGTDI 490 (870)
T CHL00122 479 IATNMAGRGTDI 490 (870)
T ss_pred EeccccCCCcCe
Confidence 999999999886
No 136
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=96.56 E-value=0.018 Score=72.20 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=70.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhc-CCCCCCcCcH-HHHHHHHHhhhccChhhhhhhhhcceEEccCCC-CHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTY-GYSNPFIKDR-EQQERLREASLSCSDKQMQSYILYGVGYHNGGL-CLKDRN 144 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~-g~~~~~~~~~-~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gL-s~~dR~ 144 (1034)
+++++|||.+|..|..+.+.|.+..... +......... .....+.... ..+.. .+..- ..+.+.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~---------~~~~~----~~~~~~~~~~~~ 580 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYN---------KHIRT----KFDKSDGFEIYY 580 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHH---------HHhcc----ccccchhhhHHH
Confidence 5899999999999999998887653221 1110000000 0000111100 00000 00000 011345
Q ss_pred HHHHHhhc-CCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCC
Q 001668 145 LIEGLFLK-GDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRP 208 (1034)
Q Consensus 145 ~ve~~F~~-G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~ 208 (1034)
.+.+.|++ +.++|||+++.|..|.|.|...+++..- |+.-..++|++||+-|+
T Consensus 581 ~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldK-----------plk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 581 KDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDK-----------PLKYHGLLQAIARTNRI 634 (667)
T ss_pred HHHHHhcCCCCceEEEEEcccccccCCCccceEEEec-----------cccccHHHHHHHHhccc
Confidence 67888875 7899999999999999999998887532 44445689999999995
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.52 E-value=0.053 Score=69.44 Aligned_cols=179 Identities=19% Similarity=0.174 Sum_probs=105.2
Q ss_pred CCCcEEEEccCcc--CHHHHHHHhCCCCCcEE-----------eccccceecc--h-HHHH----HHHHH-hhcCCCcEE
Q 001668 14 ASVRFLAVSATIP--NIEDIAEWLNVPVQGIK-----------RFGEEMRPVK--L-TTKV----FDILM-QYSRGKSAL 72 (1034)
Q Consensus 14 ~~~riI~lSATlp--n~~dla~wL~~~~~~i~-----------~f~~~~Rpv~--L-~~~v----~~~l~-~~~~~~~~L 72 (1034)
....+|++||||+ +--++++.+|.+..... .+-+..-|.+ . ...+ -..+. -...++++|
T Consensus 572 ~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~L 651 (820)
T PRK07246 572 ETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPIL 651 (820)
T ss_pred cCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEE
Confidence 3468999999996 22248888886421111 0111011211 1 1111 11221 124578999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccC-CCCHHHHHHHHHHhh
Q 001668 73 VFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNG-GLCLKDRNLIEGLFL 151 (1034)
Q Consensus 73 VFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~-gLs~~dR~~ve~~F~ 151 (1034)
|+++|.+..+.++..|... ... + +..| +. .|..+.+.|+
T Consensus 652 VLFtS~~~l~~v~~~l~~~----~~~--------------------------------~-l~Qg~~~---~~~~l~~~F~ 691 (820)
T PRK07246 652 VLFNSKKHLLAVSDLLDQW----QVS--------------------------------H-LAQEKNG---TAYNIKKRFD 691 (820)
T ss_pred EEECcHHHHHHHHHHHhhc----CCc--------------------------------E-EEeCCCc---cHHHHHHHHH
Confidence 9999999999888777431 000 1 1122 12 2455788899
Q ss_pred cCCcceEEeccccccccCCC---CeEEEEeccccccCC----------------CCccc----cCCHHHHHHhccccCCC
Q 001668 152 KGDVQVLCTTNTLAHGINLP---AHTVVIKSTQYFNKE----------------KGLYM----EHDRSTILQMCGRAGRP 208 (1034)
Q Consensus 152 ~G~ikVLVaT~tLa~GVNLP---av~vVI~~t~~y~~~----------------~~~~~----p~s~~~ylQmiGRAGR~ 208 (1034)
++.-.||++|..+..|||+| ...|||..- +|.++ +..|. |.-+..+.|-+||.=|.
T Consensus 692 ~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kL-PF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs 770 (820)
T PRK07246 692 RGEQQILLGLGSFWEGVDFVQADRMIEVITRL-PFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRR 770 (820)
T ss_pred cCCCeEEEecchhhCCCCCCCCCeEEEEEecC-CCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccC
Confidence 98889999999999999997 345566442 33322 11122 32356689999999997
Q ss_pred CCCCccEEEEEeccc-cHHHHHHHhcC
Q 001668 209 PFNDTGTVIIMTRRE-TVHLYENLLNG 234 (1034)
Q Consensus 209 g~d~~G~aiil~~~~-~~~~y~~ll~~ 234 (1034)
. ++.|.++++-+.- .+.|.+.+++.
T Consensus 771 ~-~D~Gvv~ilD~R~~~k~Yg~~~l~s 796 (820)
T PRK07246 771 E-DQKSAVLILDRRILTKSYGKQILAS 796 (820)
T ss_pred C-CCcEEEEEECCcccccHHHHHHHHh
Confidence 5 5578777775553 33444555554
No 138
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=96.50 E-value=0.0027 Score=53.98 Aligned_cols=53 Identities=36% Similarity=0.502 Sum_probs=44.9
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHh
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLL 540 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~ 540 (1034)
|.++||||+..+++|.+.|+.|+++|+.++++++..+.|..+...+.+.+.++
T Consensus 7 L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 7 LLSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999887755555555555543
No 139
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.41 E-value=0.005 Score=63.51 Aligned_cols=126 Identities=21% Similarity=0.341 Sum_probs=76.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
++.+|||++|.+..+.+...+..... ..++..+.. ....+..+.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~----------------------------------~~~~~v~~q--~~~~~~~~l 52 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLE----------------------------------EKGIPVFVQ--GSKSRDELL 52 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-----------------------------------ETSCEEES--TCCHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcc----------------------------------cccceeeec--CcchHHHHH
Confidence 57899999999988888776643211 111223333 366788889
Q ss_pred HHhhcCCcceEEecc--ccccccCCCC---eEEEEeccccccCCC--------------C------ccccCCHHHHHHhc
Q 001668 148 GLFLKGDVQVLCTTN--TLAHGINLPA---HTVVIKSTQYFNKEK--------------G------LYMEHDRSTILQMC 202 (1034)
Q Consensus 148 ~~F~~G~ikVLVaT~--tLa~GVNLPa---v~vVI~~t~~y~~~~--------------~------~~~p~s~~~ylQmi 202 (1034)
+.|+++.-.||+|+. .+..|||+|+ ..|||-+- +|-+.. + .+.|.-...+.|-+
T Consensus 53 ~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~gl-Pfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~ 131 (167)
T PF13307_consen 53 EEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGL-PFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAI 131 (167)
T ss_dssp HHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES------TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHH
T ss_pred HHHHhccCeEEEEEecccEEEeecCCCchhheeeecCC-CCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhc
Confidence 999999999999999 9999999994 44566543 332211 0 02333456778999
Q ss_pred cccCCCCCCCccEEEEEeccccHHHHHHH
Q 001668 203 GRAGRPPFNDTGTVIIMTRRETVHLYENL 231 (1034)
Q Consensus 203 GRAGR~g~d~~G~aiil~~~~~~~~y~~l 231 (1034)
||+=|.. ++.|..+++-..-....|.+.
T Consensus 132 GR~iR~~-~D~g~i~llD~R~~~~~y~~~ 159 (167)
T PF13307_consen 132 GRLIRSE-DDYGVIILLDSRFLSKRYGKY 159 (167)
T ss_dssp HCC--ST-T-EEEEEEESGGGGGHHHHHH
T ss_pred Ccceecc-CCcEEEEEEcCccccchhhhc
Confidence 9999975 457777777554333444433
No 140
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.21 E-value=0.21 Score=63.55 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=45.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhc
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLS 541 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~ 541 (1034)
|+.|||||+..++.|-. .+.|+++|++++.+++..++| ++..++.|.++++.
T Consensus 759 L~~lPgI~~~~a~~ll~-~f~si~~l~~as~eeL~~~iG-~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 759 LLKLPGVTKKNYRNLRK-KVKSIRELAKLSQNELNELIG-DEEAAKRLYDFLRT 810 (814)
T ss_pred HHHCCCCCHHHHHHHHH-HcCCHHHHHhCCHHHHHHHhC-CHHHHHHHHHHhcc
Confidence 67999999999999875 488999999999999999887 56678888888765
No 141
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.06 E-value=0.017 Score=71.08 Aligned_cols=99 Identities=17% Similarity=0.268 Sum_probs=69.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
-+++||||.+...|+.++..+.....+.+. .+ +..+-+. .......|-
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~--~~-----------------------------a~~IT~d-~~~~q~~Id 473 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNG--RY-----------------------------AMKITGD-AEQAQALID 473 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccC--ce-----------------------------EEEEecc-chhhHHHHH
Confidence 368999999999999999999876433211 00 2223333 233444444
Q ss_pred HHhh-cCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCC
Q 001668 148 GLFL-KGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRP 208 (1034)
Q Consensus 148 ~~F~-~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~ 208 (1034)
+-+. +..-+|.|+.+.|..|||+|.+..++-.-. =.|..-|+||+||+=|.
T Consensus 474 ~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~----------VrSktkF~QMvGRGTRl 525 (875)
T COG4096 474 NFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK----------VRSKTKFKQMVGRGTRL 525 (875)
T ss_pred HHHhcCCCCceEEehhhhhcCCCchheeeeeehhh----------hhhHHHHHHHhcCcccc
Confidence 4444 556789999999999999999888874331 14788899999999886
No 142
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.027 Score=70.65 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=81.2
Q ss_pred CCCcEEEEccCccC----HHHHHHHhCCCCC----cEEeccccceecchHHHHHHHHHhhcCCCcEEEEcCC---HHHHH
Q 001668 14 ASVRFLAVSATIPN----IEDIAEWLNVPVQ----GIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCST---RKGAQ 82 (1034)
Q Consensus 14 ~~~riI~lSATlpn----~~dla~wL~~~~~----~i~~f~~~~Rpv~L~~~v~~~l~~~~~~~~~LVFv~s---Rk~~e 82 (1034)
+.-++|..|||... +.-+-..||-... .+.|+...+-..+...++...+..... -.||||+. +..++
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~y~~~~~~e~~~elvk~lG~--GgLIfV~~d~G~e~ae 352 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIYVESESLEKVVELVKKLGD--GGLIFVPIDYGREKAE 352 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCCccCccchhhhheeeeeccCccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHH
Confidence 45689999999864 3445566665432 222333333333445566667766644 57999999 77777
Q ss_pred HHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHhhcCCcceEEecc
Q 001668 83 EAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTN 162 (1034)
Q Consensus 83 ~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~ 162 (1034)
.++++|... |. .+..+|++ +....+.|..|.+.|||...
T Consensus 353 el~e~Lr~~----Gi--------------------------------~a~~~~a~-----~~~~le~F~~GeidvLVGvA 391 (1187)
T COG1110 353 ELAEYLRSH----GI--------------------------------NAELIHAE-----KEEALEDFEEGEVDVLVGVA 391 (1187)
T ss_pred HHHHHHHhc----Cc--------------------------------eEEEeecc-----chhhhhhhccCceeEEEEec
Confidence 777777654 22 15666763 36788999999999998765
Q ss_pred ----ccccccCCCC-eEEEE
Q 001668 163 ----TLAHGINLPA-HTVVI 177 (1034)
Q Consensus 163 ----tLa~GVNLPa-v~vVI 177 (1034)
+|-||+|+|. ++.+|
T Consensus 392 syYG~lVRGlDLP~rirYaI 411 (1187)
T COG1110 392 SYYGVLVRGLDLPHRIRYAV 411 (1187)
T ss_pred ccccceeecCCchhheeEEE
Confidence 7999999996 34444
No 143
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.76 E-value=0.076 Score=67.25 Aligned_cols=174 Identities=13% Similarity=0.169 Sum_probs=98.5
Q ss_pred CCcEEEEccCccCHHHHHHHhCCCCCcEE----ecccc-------------------c--eecc-hHHHHHHHHHhh--c
Q 001668 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIK----RFGEE-------------------M--RPVK-LTTKVFDILMQY--S 66 (1034)
Q Consensus 15 ~~riI~lSATlpn~~dla~wL~~~~~~i~----~f~~~-------------------~--Rpv~-L~~~v~~~l~~~--~ 66 (1034)
-.-+|++||||...+.++..||.+..... .+..+ + |..+ ....+-..+... .
T Consensus 441 ~~svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~ 520 (705)
T TIGR00604 441 VRSVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKI 520 (705)
T ss_pred cCEEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhc
Confidence 34689999999999999999986432110 01100 0 1000 001111222222 2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.++.+|||.+|-..-+.++..+...... +.+ ..+.-.+.-+-...++..+
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~--------------~~i----------------~~~k~i~~E~~~~~~~~~~ 570 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGIL--------------ENI----------------EKKKLIFVETKDAQETSDA 570 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHH--------------HHH----------------hcCCCEEEeCCCcchHHHH
Confidence 2577999999999888888776542100 000 0001111112122578888
Q ss_pred HHHhhc----CCcceEEec--cccccccCCCC---eEEEEeccccc-cCCC----------------Cc---c-ccCCHH
Q 001668 147 EGLFLK----GDVQVLCTT--NTLAHGINLPA---HTVVIKSTQYF-NKEK----------------GL---Y-MEHDRS 196 (1034)
Q Consensus 147 e~~F~~----G~ikVLVaT--~tLa~GVNLPa---v~vVI~~t~~y-~~~~----------------~~---~-~p~s~~ 196 (1034)
.+.|+. |.-.||+|+ ..++.|||+++ ..|||-|- +| .+.. +. | ...-..
T Consensus 571 l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGl-Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~ 649 (705)
T TIGR00604 571 LERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGI-PYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMR 649 (705)
T ss_pred HHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEcc-CCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Confidence 888964 445699998 88999999996 45666553 34 1110 01 1 111235
Q ss_pred HHHHhccccCCCCCCCccEEEEEe
Q 001668 197 TILQMCGRAGRPPFNDTGTVIIMT 220 (1034)
Q Consensus 197 ~ylQmiGRAGR~g~d~~G~aiil~ 220 (1034)
.+.|-+||+=|-. ++.|..+++-
T Consensus 650 ~v~QaiGR~IR~~-~D~G~iillD 672 (705)
T TIGR00604 650 AVNQAIGRVIRHK-DDYGSIVLLD 672 (705)
T ss_pred HHHHHhCccccCc-CceEEEEEEe
Confidence 6789999999975 5578766663
No 144
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=94.93 E-value=0.21 Score=61.09 Aligned_cols=82 Identities=23% Similarity=0.152 Sum_probs=62.4
Q ss_pred eEEccCCCCHHHHHHHHHHhhcC---CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCC
Q 001668 131 VGYHNGGLCLKDRNLIEGLFLKG---DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGR 207 (1034)
Q Consensus 131 V~~hH~gLs~~dR~~ve~~F~~G---~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR 207 (1034)
..-+-|..+.++|....+.|... ..=.|++|.+.+.||||-+..+||.|+.-|+|. .=+|-+-||-|
T Consensus 514 ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ----------~DLQAmDRaHR 583 (971)
T KOG0385|consen 514 YCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQ----------VDLQAMDRAHR 583 (971)
T ss_pred eEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCch----------hhhHHHHHHHh
Confidence 44567999999999999999744 455789999999999999999999988767654 22566666666
Q ss_pred CCCCCccEEEEEecc
Q 001668 208 PPFNDTGTVIIMTRR 222 (1034)
Q Consensus 208 ~g~d~~G~aiil~~~ 222 (1034)
-|..+.-.+|-++..
T Consensus 584 IGQ~K~V~V~RLite 598 (971)
T KOG0385|consen 584 IGQKKPVVVYRLITE 598 (971)
T ss_pred hCCcCceEEEEEecc
Confidence 665566677744443
No 145
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=94.69 E-value=0.11 Score=66.36 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=73.8
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHh
Q 001668 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF 150 (1034)
Q Consensus 71 ~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F 150 (1034)
.||=+++.+.+..+|+.|.......+. ..-+..+|+.....+|..+|+..
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~------------------------------~i~~~~yHSr~~l~~Rs~~E~~L 808 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKY------------------------------QIHLCCYHAQDPLLLRSYIERRL 808 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCC------------------------------ceeEEEecccChHHHHHHHHHHH
Confidence 477777888888888888765322111 12277889999999998888653
Q ss_pred ----------------------hc----CCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccc
Q 001668 151 ----------------------LK----GDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGR 204 (1034)
Q Consensus 151 ----------------------~~----G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGR 204 (1034)
++ +...|+|+|.+.+.|+|+....+|. .+-++..++|++||
T Consensus 809 d~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~dfd~~~~-------------~~~~~~sliQ~aGR 875 (1110)
T TIGR02562 809 DQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDYDWAIA-------------DPSSMRSIIQLAGR 875 (1110)
T ss_pred HHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecccCCeeee-------------ccCcHHHHHHHhhc
Confidence 12 4778999999999999997665555 34578899999999
Q ss_pred cCCCCCCCc
Q 001668 205 AGRPPFNDT 213 (1034)
Q Consensus 205 AGR~g~d~~ 213 (1034)
..|-|....
T Consensus 876 ~~R~~~~~~ 884 (1110)
T TIGR02562 876 VNRHRLEKV 884 (1110)
T ss_pred ccccccCCC
Confidence 999775443
No 146
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=94.61 E-value=0.098 Score=60.95 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=61.7
Q ss_pred hhcceEEccCCCCHHHHHHHHHHhh-cCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhcccc
Q 001668 127 ILYGVGYHNGGLCLKDRNLIEGLFL-KGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRA 205 (1034)
Q Consensus 127 l~~GV~~hH~gLs~~dR~~ve~~F~-~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRA 205 (1034)
++.|=-|++|..++.+|..|++.|+ +..++-++-+-+.-..+|||..+|+|+-..+|+ |..+=-||.||.
T Consensus 561 ikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRRQEAQRLGRI 631 (776)
T KOG1123|consen 561 IKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRRQEAQRLGRI 631 (776)
T ss_pred HHcCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chHHHHHHHHHH
Confidence 3556678999999999999999998 668999999999999999999999998776655 345567999987
Q ss_pred CCC
Q 001668 206 GRP 208 (1034)
Q Consensus 206 GR~ 208 (1034)
-|+
T Consensus 632 LRA 634 (776)
T KOG1123|consen 632 LRA 634 (776)
T ss_pred HHH
Confidence 776
No 147
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=94.44 E-value=0.16 Score=64.38 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=52.7
Q ss_pred ccCCCCHHHHHHHHHHhhcC--CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhcccc
Q 001668 134 HNGGLCLKDRNLIEGLFLKG--DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRA 205 (1034)
Q Consensus 134 hH~gLs~~dR~~ve~~F~~G--~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRA 205 (1034)
+-|.-.-++|+..++.|... ....|++|..-+.||||-..+.||-|+.-|++. ++-...+-.||||++
T Consensus 1306 LDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPt----MDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1306 LDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPT----MDAQAQDRCHRIGQT 1375 (1958)
T ss_pred ecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCch----hhhHHHHHHHhhcCc
Confidence 45888999999999999743 456788999999999998888888777666653 444566777777776
No 148
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=93.92 E-value=0.31 Score=60.86 Aligned_cols=82 Identities=20% Similarity=0.145 Sum_probs=61.6
Q ss_pred hhhcceEEccCCCCHHHHHHHHHHhhcC--Ccc-eEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhc
Q 001668 126 YILYGVGYHNGGLCLKDRNLIEGLFLKG--DVQ-VLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMC 202 (1034)
Q Consensus 126 ~l~~GV~~hH~gLs~~dR~~ve~~F~~G--~ik-VLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmi 202 (1034)
..++.+..+||.|+..+|+.+.+.|.+- ..+ .|.+|-+-+.||||-+..-||.++-.|+ ++.=.|-+
T Consensus 617 ~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWN----------Pa~d~QAm 686 (776)
T KOG0390|consen 617 WRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWN----------PAVDQQAM 686 (776)
T ss_pred hcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCC----------chhHHHHH
Confidence 3466789999999999999999999854 324 4567778889999977666666664444 44457999
Q ss_pred cccCCCCCCCccEEE
Q 001668 203 GRAGRPPFNDTGTVI 217 (1034)
Q Consensus 203 GRAGR~g~d~~G~ai 217 (1034)
+||-|+|.-+.-.+|
T Consensus 687 aR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 687 ARAWRDGQKKPVYIY 701 (776)
T ss_pred HHhccCCCcceEEEE
Confidence 999999955444455
No 149
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.67 E-value=0.24 Score=63.33 Aligned_cols=110 Identities=25% Similarity=0.254 Sum_probs=79.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceE--EccCCCCHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVG--YHNGGLCLKDRNL 145 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~--~hH~gLs~~dR~~ 145 (1034)
++++||||.-+....-+-+.|.+..+. .|. -+-|..++.+|..
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mp-----------------------------------sVtymRLDGSVpp~~R~k 1384 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMP-----------------------------------SVTYMRLDGSVPPGDRQK 1384 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcC-----------------------------------ceeEEEecCCCCcHHHHH
Confidence 578999999888887777777553211 133 4569999999999
Q ss_pred HHHHhhcC-CcceEE-eccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEE-EEecc
Q 001668 146 IEGLFLKG-DVQVLC-TTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI-IMTRR 222 (1034)
Q Consensus 146 ve~~F~~G-~ikVLV-aT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~ai-il~~~ 222 (1034)
+.+.|.++ .|.||+ +|-+-+.|+||-....||... +-|-|+. =+|-+-||-|-|..+.-.++ ++++.
T Consensus 1385 iV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvE-------HDWNPMr---DLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1385 IVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVE-------HDWNPMR---DLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred HHHHhcCCCceeEEEEeeeccccccccCCCceEEEEe-------cCCCchh---hHHHHHHHHhhcCceeeeeeeehhcc
Confidence 99999988 899885 555889999997666666443 2243432 28888899998865555666 45544
No 150
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.34 E-value=1.6 Score=54.15 Aligned_cols=117 Identities=17% Similarity=0.118 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.++.++|-+.|.+..+.++..|..... . -.+..|..+ .|...
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~---~---------------------------------~~l~qg~~~--~~~~l 510 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIP---A---------------------------------EIVIQSEKN--RLASA 510 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcC---C---------------------------------CEEEeCCCc--cHHHH
Confidence 466899999999999999888754310 0 123344332 34667
Q ss_pred HHHhhc----CCcceEEeccccccccCC--------C--Ce-EEEEeccccccCC-----------CCc----cccCCHH
Q 001668 147 EGLFLK----GDVQVLCTTNTLAHGINL--------P--AH-TVVIKSTQYFNKE-----------KGL----YMEHDRS 196 (1034)
Q Consensus 147 e~~F~~----G~ikVLVaT~tLa~GVNL--------P--av-~vVI~~t~~y~~~-----------~~~----~~p~s~~ 196 (1034)
.+.|++ |.-.||++|..+-.|||+ | +. .|||.- -.|.++ +|. ..|.-..
T Consensus 511 ~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~k-LPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i 589 (636)
T TIGR03117 511 EQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITC-APFGLNRSLSMLKRIRKTSVRPWEIINESLM 589 (636)
T ss_pred HHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEe-CCCCcCChHHHHHHHHhcCCChHhhhHHHHH
Confidence 788886 478999999999999999 2 23 355533 244332 121 1333456
Q ss_pred HHHHhccccCCCCCC-CccEEEEEecc
Q 001668 197 TILQMCGRAGRPPFN-DTGTVIIMTRR 222 (1034)
Q Consensus 197 ~ylQmiGRAGR~g~d-~~G~aiil~~~ 222 (1034)
.+.|-+||-=|..-| ..|..+|+-..
T Consensus 590 ~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 590 MLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred HHHHhcCceeecCCCcCceEEEEEeCC
Confidence 678999999998644 27877777666
No 151
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=92.51 E-value=0.2 Score=53.73 Aligned_cols=54 Identities=28% Similarity=0.428 Sum_probs=47.4
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhc
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLS 541 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~ 541 (1034)
|.++||||+..+++|.++|+.|+++|..++.+++..+.|........|.+.+..
T Consensus 5 L~~IpGIG~krakkLl~~GF~Sve~Ik~AS~eEL~~V~GIg~k~AekI~e~l~~ 58 (232)
T PRK12766 5 LEDISGVGPSKAEALREAGFESVEDVRAADQSELAEVDGIGNALAARIKADVGG 58 (232)
T ss_pred cccCCCcCHHHHHHHHHcCCCCHHHHHhCCHHHHHHccCCCHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999987666666667666664
No 152
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.24 E-value=0.49 Score=59.77 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=68.5
Q ss_pred HhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHH
Q 001668 63 MQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKD 142 (1034)
Q Consensus 63 ~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~d 142 (1034)
.....+.+++|-+||+.-|...+..+...+...| ..|+.+||+++..+
T Consensus 305 ~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~--------------------------------i~v~ll~G~~~~~~ 352 (681)
T PRK10917 305 AAIEAGYQAALMAPTEILAEQHYENLKKLLEPLG--------------------------------IRVALLTGSLKGKE 352 (681)
T ss_pred HHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcC--------------------------------cEEEEEcCCCCHHH
Confidence 3445678999999999999988888876543222 23899999999999
Q ss_pred HHHHHHHhhcCCcceEEeccccc-cccCCCCeEEEEecc
Q 001668 143 RNLIEGLFLKGDVQVLCTTNTLA-HGINLPAHTVVIKST 180 (1034)
Q Consensus 143 R~~ve~~F~~G~ikVLVaT~tLa-~GVNLPav~vVI~~t 180 (1034)
|..+...+.+|.+.|+|+|..+- ..+.+....+||-+-
T Consensus 353 r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 353 RREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred HHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEec
Confidence 99999999999999999998544 457788888777544
No 153
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=91.99 E-value=0.48 Score=60.85 Aligned_cols=111 Identities=24% Similarity=0.220 Sum_probs=79.2
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHH
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145 (1034)
Q Consensus 66 ~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ 145 (1034)
..|++||||-.-.+.-.-++.+|... ++. .--+-|+...+.|+.
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r----~yp--------------------------------fQRLDGsvrgelRq~ 740 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLR----GYP--------------------------------FQRLDGSVRGELRQQ 740 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHc----CCc--------------------------------ceeccCCcchHHHHH
Confidence 35789999998888777777777654 332 223468999999999
Q ss_pred HHHHhhc---CCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEecc
Q 001668 146 IEGLFLK---GDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR 222 (1034)
Q Consensus 146 ve~~F~~---G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~ 222 (1034)
.++-|.. ...-.|.||.+.+.||||-+...||-++.-|+| ..=+|-..||-|-|.-..-.+|=+++.
T Consensus 741 AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNP----------QNDLQAqARaHRIGQkk~VnVYRLVTk 810 (1373)
T KOG0384|consen 741 AIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNP----------QNDLQAQARAHRIGQKKHVNVYRLVTK 810 (1373)
T ss_pred HHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCc----------chHHHHHHHHHhhcccceEEEEEEecC
Confidence 9999973 467899999999999999655444433433443 334787788888876566667744443
No 154
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=91.55 E-value=0.59 Score=46.93 Aligned_cols=87 Identities=23% Similarity=0.331 Sum_probs=58.5
Q ss_pred eEEccCCCCHHHHHHHHHHhhcCC-cceEEeccccccccCCCCe---EEEEeccccccCCC--------------C---c
Q 001668 131 VGYHNGGLCLKDRNLIEGLFLKGD-VQVLCTTNTLAHGINLPAH---TVVIKSTQYFNKEK--------------G---L 189 (1034)
Q Consensus 131 V~~hH~gLs~~dR~~ve~~F~~G~-ikVLVaT~tLa~GVNLPav---~vVI~~t~~y~~~~--------------~---~ 189 (1034)
.-.+.-+....+...+.+.|++.. -.||++|..++.|||+|.. .|||.+- +|-+.. + .
T Consensus 24 ~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~gl-Pfp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 24 LLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGL-PFPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred CeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEec-CCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 344556666667888999998653 3799999889999999974 5666553 332111 1 1
Q ss_pred c----ccCCHHHHHHhccccCCCCCCCccEEEEE
Q 001668 190 Y----MEHDRSTILQMCGRAGRPPFNDTGTVIIM 219 (1034)
Q Consensus 190 ~----~p~s~~~ylQmiGRAGR~g~d~~G~aiil 219 (1034)
| .|.-...+.|.+||+=|.. +..|..+++
T Consensus 103 ~~~~~~~~a~~~l~Qa~GR~iR~~-~D~g~i~l~ 135 (141)
T smart00492 103 FDFVSLPDAMRTLAQCVGRLIRGA-NDYGVVVIA 135 (141)
T ss_pred hhHHHHHHHHHHHHHHhCccccCc-CceEEEEEE
Confidence 1 1233567899999999976 457766665
No 155
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=90.83 E-value=0.81 Score=59.13 Aligned_cols=112 Identities=20% Similarity=0.177 Sum_probs=83.0
Q ss_pred hcCCC--cEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHH
Q 001668 65 YSRGK--SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKD 142 (1034)
Q Consensus 65 ~~~~~--~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~d 142 (1034)
...+. ++|||+.-.....-+...+... + .....++|+++...
T Consensus 706 ~~~~~~~kvlifsq~t~~l~il~~~l~~~----~--------------------------------~~~~~ldG~~~~~~ 749 (866)
T COG0553 706 LEEGHYHKVLIFSQFTPVLDLLEDYLKAL----G--------------------------------IKYVRLDGSTPAKR 749 (866)
T ss_pred HhhcccccEEEEeCcHHHHHHHHHHHHhc----C--------------------------------CcEEEEeCCCChhh
Confidence 34566 8999999887776666666443 1 12778999999999
Q ss_pred HHHHHHHhhcC--CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEe
Q 001668 143 RNLIEGLFLKG--DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220 (1034)
Q Consensus 143 R~~ve~~F~~G--~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~ 220 (1034)
|..+.+.|.++ ..-.+++|...+.|+|+-.-.+||.++..| .+....|...||-|-|..+.=.++-+.
T Consensus 750 r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w----------np~~~~Qa~dRa~RigQ~~~v~v~r~i 819 (866)
T COG0553 750 RQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW----------NPAVELQAIDRAHRIGQKRPVKVYRLI 819 (866)
T ss_pred HHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc----------ChHHHHHHHHHHHHhcCcceeEEEEee
Confidence 99999999985 556677888999999999888888876333 456677888888887755555566443
Q ss_pred cc
Q 001668 221 RR 222 (1034)
Q Consensus 221 ~~ 222 (1034)
..
T Consensus 820 ~~ 821 (866)
T COG0553 820 TR 821 (866)
T ss_pred cC
Confidence 33
No 156
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=90.60 E-value=0.98 Score=54.96 Aligned_cols=111 Identities=25% Similarity=0.217 Sum_probs=77.4
Q ss_pred hcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHH
Q 001668 65 YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRN 144 (1034)
Q Consensus 65 ~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~ 144 (1034)
...|+.+|+|..--+....+-.+|... ++ .-.-+-|.....+|+
T Consensus 1041 kaegHRvL~yfQMTkM~dl~EdYl~yr----~Y--------------------------------~ylRLDGSsk~~dRr 1084 (1185)
T KOG0388|consen 1041 KAEGHRVLMYFQMTKMIDLIEDYLVYR----GY--------------------------------TYLRLDGSSKASDRR 1084 (1185)
T ss_pred hcCCceEEehhHHHHHHHHHHHHHHhh----cc--------------------------------ceEEecCcchhhHHH
Confidence 356889999987666555444444322 21 123356888999999
Q ss_pred HHHHHhhcCCc-ceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEE-EEec
Q 001668 145 LIEGLFLKGDV-QVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI-IMTR 221 (1034)
Q Consensus 145 ~ve~~F~~G~i-kVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~ai-il~~ 221 (1034)
.+.+.|....| -.|++|...+.||||-|...||-|+.-|+|.. =.|-+.||-|.|..+.-.++ +++.
T Consensus 1085 d~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~----------D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1085 DVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTA----------DQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred HHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcch----------hhHHHHHHHhccCccceeeeeeccc
Confidence 99999986554 45799999999999999999998776666531 25677788887755555566 4443
No 157
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=90.18 E-value=0.52 Score=58.65 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=92.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
.+-++||.+.-.....+..+|...- ..|.. -++-+...|+.+...+.+.|.
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~-~fg~~----------------------------~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQ-EFGQA----------------------------NKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhh-hhccc----------------------------hhcccccchhhcccHhhhhcc
Confidence 4679999999888877777775431 11221 123466789999999999999
Q ss_pred HHhhcCCcceEEeccccccccCCCCeEEEEeccccc----cCCCCc----cccCCHHHHHHhccccCCCCCCCccEEEEE
Q 001668 148 GLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYF----NKEKGL----YMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219 (1034)
Q Consensus 148 ~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y----~~~~~~----~~p~s~~~ylQmiGRAGR~g~d~~G~aiil 219 (1034)
+....|..++|++|.++..-+.+-++..||...+.| ...... ..-.+.....||-||+||. +.|.|.-+
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~l 770 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHL 770 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee---cccccccc
Confidence 999999999999999999999999977777654332 111111 1334666789999999997 58999988
Q ss_pred eccccHH
Q 001668 220 TRRETVH 226 (1034)
Q Consensus 220 ~~~~~~~ 226 (1034)
|.....+
T Consensus 771 cs~arF~ 777 (1282)
T KOG0921|consen 771 CSRARFE 777 (1282)
T ss_pred cHHHHHH
Confidence 8655433
No 158
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=90.18 E-value=0.33 Score=44.91 Aligned_cols=35 Identities=37% Similarity=0.603 Sum_probs=33.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHH
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIE 522 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le 522 (1034)
|.+||+||+.+++-|...||.++.+|...+|+++=
T Consensus 14 L~~iP~IG~a~a~DL~~LGi~s~~~L~g~dP~~Ly 48 (93)
T PF11731_consen 14 LTDIPNIGKATAEDLRLLGIRSPADLKGRDPEELY 48 (93)
T ss_pred HhcCCCccHHHHHHHHHcCCCCHHHHhCCCHHHHH
Confidence 89999999999999999999999999999988773
No 159
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.85 E-value=3 Score=50.86 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=63.4
Q ss_pred hcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHH
Q 001668 65 YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRN 144 (1034)
Q Consensus 65 ~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~ 144 (1034)
...++++||-+|++.-+..++..|.+.+ + ..++.+||+++..+|.
T Consensus 22 l~~g~~vLvlvP~i~L~~Q~~~~l~~~f---~--------------------------------~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 22 LALGKSVLVLVPEIALTPQMIQRFKYRF---G--------------------------------SQVAVLHSGLSDSEKL 66 (505)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHHh---C--------------------------------CcEEEEECCCCHHHHH
Confidence 4568899999999999988888886542 1 1278899999999999
Q ss_pred HHHHHhhcCCcceEEeccccccccCCCCeEEEEecc
Q 001668 145 LIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKST 180 (1034)
Q Consensus 145 ~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t 180 (1034)
.+....++|..+|+|+|..+.. ..+.+..+||-+.
T Consensus 67 ~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 9999999999999999986543 4456666666544
No 160
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=89.74 E-value=0.47 Score=54.15 Aligned_cols=54 Identities=30% Similarity=0.460 Sum_probs=49.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhc
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLS 541 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~ 541 (1034)
|..+|+||+.++++|.+.|+.|+++|+.++++++..+.|.+++.+..+.+.+..
T Consensus 8 l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~ 61 (317)
T PRK04301 8 LEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAARE 61 (317)
T ss_pred HhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999888888888877764
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.60 E-value=3.5 Score=51.83 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=81.8
Q ss_pred hcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHH
Q 001668 65 YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRN 144 (1034)
Q Consensus 65 ~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~ 144 (1034)
...|+++||-++....+..+...|...+.. ..|+.+|++|++.+|.
T Consensus 185 l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~----------------------------------~~v~~lhS~l~~~~R~ 230 (665)
T PRK14873 185 LRAGRGALVVVPDQRDVDRLEAALRALLGA----------------------------------GDVAVLSAGLGPADRY 230 (665)
T ss_pred HHcCCeEEEEecchhhHHHHHHHHHHHcCC----------------------------------CcEEEECCCCCHHHHH
Confidence 456889999999999999998888765310 1288999999999999
Q ss_pred HHHHHhhcCCcceEEeccccccccCCCCeEEEEecccc---ccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEec
Q 001668 145 LIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQY---FNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTR 221 (1034)
Q Consensus 145 ~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~---y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~ 221 (1034)
......++|..+|+|-|..+.. .-+++...||-+..+ |..+.+ .-|+..++.-+.++ ..|..+++..
T Consensus 231 ~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdEEhd~sykq~~~--p~yhaRdvA~~Ra~-------~~~~~lvLgS 300 (665)
T PRK14873 231 RRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWDDGDDLLAEPRA--PYPHAREVALLRAH-------QHGCALLIGG 300 (665)
T ss_pred HHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEcCCchhhcCCCC--CCccHHHHHHHHHH-------HcCCcEEEEC
Confidence 9999999999999999987543 455565666654322 222111 11355555443332 3566666644
Q ss_pred c-ccHHHHHHH
Q 001668 222 R-ETVHLYENL 231 (1034)
Q Consensus 222 ~-~~~~~y~~l 231 (1034)
. ...+.|.+.
T Consensus 301 aTPSles~~~~ 311 (665)
T PRK14873 301 HARTAEAQALV 311 (665)
T ss_pred CCCCHHHHHHH
Confidence 3 334444433
No 162
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=89.39 E-value=0.53 Score=53.46 Aligned_cols=53 Identities=30% Similarity=0.513 Sum_probs=47.5
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHh
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLL 540 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~ 540 (1034)
|.++||||+.++++|.+.|+.|+++|+.++++++..+.|.++..+..+.+.+.
T Consensus 1 l~~i~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~ 53 (310)
T TIGR02236 1 LEDLPGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAAR 53 (310)
T ss_pred CcccCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999877777888777776
No 163
>PRK05580 primosome assembly protein PriA; Validated
Probab=89.20 E-value=3.9 Score=51.67 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=58.8
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHH
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145 (1034)
Q Consensus 66 ~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ 145 (1034)
..++++||.+|++.-+..+++.+.+.+ ...++.+||+++..+|..
T Consensus 188 ~~g~~vLvLvPt~~L~~Q~~~~l~~~f-----------------------------------g~~v~~~~s~~s~~~r~~ 232 (679)
T PRK05580 188 AQGKQALVLVPEIALTPQMLARFRARF-----------------------------------GAPVAVLHSGLSDGERLD 232 (679)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHh-----------------------------------CCCEEEEECCCCHHHHHH
Confidence 446778888888877777776665432 123889999999999999
Q ss_pred HHHHhhcCCcceEEeccccccccCCCCeEEEEecc
Q 001668 146 IEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKST 180 (1034)
Q Consensus 146 ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t 180 (1034)
+......|..+|+|+|..+.. +.+.....||-+.
T Consensus 233 ~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 233 EWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred HHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 999999999999999985443 4555666666543
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=88.73 E-value=1.1 Score=56.49 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=65.9
Q ss_pred HhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHH
Q 001668 63 MQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKD 142 (1034)
Q Consensus 63 ~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~d 142 (1034)
..+..|+|+||-+.+....+.+.+.|.+.. .....+ .+.+| ..+
T Consensus 424 ~~~~~gqPvLvgT~sie~SE~ls~~L~~~~----i~h~VL----------------------------NAk~h----~~E 467 (822)
T COG0653 424 ERHEKGQPVLVGTVSIEKSELLSKLLRKAG----IPHNVL----------------------------NAKNH----ARE 467 (822)
T ss_pred HHHhcCCCEEEcCcceecchhHHHHHHhcC----CCceee----------------------------ccccH----HHH
Confidence 457789999999999999999998887542 211111 12233 222
Q ss_pred HHHHHHHhhcCCcceEEeccccccccCCC--Ce---------EEEEeccccccCCCCccccCCHHHH-HHhccccCCCCC
Q 001668 143 RNLIEGLFLKGDVQVLCTTNTLAHGINLP--AH---------TVVIKSTQYFNKEKGLYMEHDRSTI-LQMCGRAGRPPF 210 (1034)
Q Consensus 143 R~~ve~~F~~G~ikVLVaT~tLa~GVNLP--av---------~vVI~~t~~y~~~~~~~~p~s~~~y-lQmiGRAGR~g~ 210 (1034)
=+.|-++-+.| -|-|||+.++||-||- .. ..|| ||.+.. ...+ -|.-||+||-|
T Consensus 468 A~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VI-gTERhE----------SRRIDnQLRGRsGRQG- 533 (822)
T COG0653 468 AEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVI-GTERHE----------SRRIDNQLRGRAGRQG- 533 (822)
T ss_pred HHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEE-ecccch----------hhHHHHHhhcccccCC-
Confidence 23333333333 4679999999999973 22 1233 332211 2223 38899999988
Q ss_pred CCccEEEEEec
Q 001668 211 NDTGTVIIMTR 221 (1034)
Q Consensus 211 d~~G~aiil~~ 221 (1034)
..|..-.+..
T Consensus 534 -DpG~S~F~lS 543 (822)
T COG0653 534 -DPGSSRFYLS 543 (822)
T ss_pred -Ccchhhhhhh
Confidence 6777665544
No 165
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=88.69 E-value=1.4 Score=55.31 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=67.2
Q ss_pred HhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHH
Q 001668 63 MQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKD 142 (1034)
Q Consensus 63 ~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~d 142 (1034)
.....+.+++|-+||+.-|...+..+...+...| ..++.+||+++..+
T Consensus 279 ~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~g--------------------------------i~v~lltg~~~~~~ 326 (630)
T TIGR00643 279 AAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLG--------------------------------IEVALLTGSLKGKR 326 (630)
T ss_pred HHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccC--------------------------------cEEEEEecCCCHHH
Confidence 3445678999999999988888887776532211 23889999999999
Q ss_pred HHHHHHHhhcCCcceEEecccccc-ccCCCCeEEEEecc
Q 001668 143 RNLIEGLFLKGDVQVLCTTNTLAH-GINLPAHTVVIKST 180 (1034)
Q Consensus 143 R~~ve~~F~~G~ikVLVaT~tLa~-GVNLPav~vVI~~t 180 (1034)
|..+.+...+|.+.|+|+|..+-. .+++....+||-+-
T Consensus 327 r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 327 RKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred HHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEec
Confidence 999999999999999999986654 46677777777544
No 166
>COG4889 Predicted helicase [General function prediction only]
Probab=87.35 E-value=0.52 Score=58.52 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=57.9
Q ss_pred ceEEcc--CCCCHHHHHHHHHH---hhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccc
Q 001668 130 GVGYHN--GGLCLKDRNLIEGL---FLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGR 204 (1034)
Q Consensus 130 GV~~hH--~gLs~~dR~~ve~~---F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGR 204 (1034)
.+..-| |.|...+|...+.+ |.....+||---.-|..|||+|+..-||- |+|. -+.-+++|-+||
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~pr------~smVDIVQaVGR 568 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----FDPR------SSMVDIVQAVGR 568 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----ecCc------hhHHHHHHHHHH
Confidence 355555 88999999544442 34567899988889999999999999994 5543 367899999999
Q ss_pred cCCCCC-CCccEEEE
Q 001668 205 AGRPPF-NDTGTVII 218 (1034)
Q Consensus 205 AGR~g~-d~~G~aii 218 (1034)
.=|..- .+.|..|+
T Consensus 569 VMRKa~gK~yGYIIL 583 (1518)
T COG4889 569 VMRKAKGKKYGYIIL 583 (1518)
T ss_pred HHHhCcCCccceEEE
Confidence 988431 24566663
No 167
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=87.29 E-value=1.7 Score=56.46 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=65.0
Q ss_pred hhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHH
Q 001668 64 QYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143 (1034)
Q Consensus 64 ~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR 143 (1034)
....+.+++|.|||+.-|.+.+..+...+... ...|+.++|+.+..++
T Consensus 496 al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~--------------------------------~i~v~~Lsg~~~~~e~ 543 (926)
T TIGR00580 496 AVLDGKQVAVLVPTTLLAQQHFETFKERFANF--------------------------------PVTIELLSRFRSAKEQ 543 (926)
T ss_pred HHHhCCeEEEEeCcHHHHHHHHHHHHHHhccC--------------------------------CcEEEEEeccccHHHH
Confidence 34567899999999999988888887653221 1237888999999999
Q ss_pred HHHHHHhhcCCcceEEeccccc-cccCCCCeEEEEec
Q 001668 144 NLIEGLFLKGDVQVLCTTNTLA-HGINLPAHTVVIKS 179 (1034)
Q Consensus 144 ~~ve~~F~~G~ikVLVaT~tLa-~GVNLPav~vVI~~ 179 (1034)
..+.+.+++|.+.|+|+|..+. ..+.+....+||-+
T Consensus 544 ~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 544 NEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred HHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEee
Confidence 9999999999999999998544 45677777766644
No 168
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=86.60 E-value=4.2 Score=51.31 Aligned_cols=113 Identities=20% Similarity=0.179 Sum_probs=71.3
Q ss_pred HHHH-HhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCC
Q 001668 59 FDIL-MQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGG 137 (1034)
Q Consensus 59 ~~~l-~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~g 137 (1034)
|..+ ..+..|+.+.||++|...++.+++..... + .-|..+++.
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~----~--------------------------------~~Vl~l~s~ 315 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCARF----T--------------------------------KKVLVLNST 315 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhc----C--------------------------------CeEEEEcCC
Confidence 4444 45677889999999998888777665432 1 125566665
Q ss_pred CCHHHHHHHHHHhhcCCcceEEeccccccccCCCCeE--EEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccE
Q 001668 138 LCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHT--VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGT 215 (1034)
Q Consensus 138 Ls~~dR~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~--vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~ 215 (1034)
-... .|+. =++.+|++-|++...|+++-... -|.-+- .+.. +. -+..+..||+||.-... ..+
T Consensus 316 ~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yv---k~~~--~g-pd~~s~~Q~lgRvR~l~---~~e 380 (824)
T PF02399_consen 316 DKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYV---KPMS--YG-PDMVSVYQMLGRVRSLL---DNE 380 (824)
T ss_pred CCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEe---cCCC--CC-CcHHHHHHHHHHHHhhc---cCe
Confidence 4444 3332 45689999999999999985432 122111 1111 11 25667899999996653 566
Q ss_pred EEEEecc
Q 001668 216 VIIMTRR 222 (1034)
Q Consensus 216 aiil~~~ 222 (1034)
.+++.+.
T Consensus 381 i~v~~d~ 387 (824)
T PF02399_consen 381 IYVYIDA 387 (824)
T ss_pred EEEEEec
Confidence 6766654
No 169
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=86.45 E-value=1.7 Score=55.40 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=56.7
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHH
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145 (1034)
Q Consensus 66 ~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ 145 (1034)
.+|+++++-+||+.-+.+++++|.......+. +..-+. +|+.|+.++++.
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~-----------------------------~~~~~~-yh~~l~~~ekee 172 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGS-----------------------------LDVLVV-YHSALPTKEKEE 172 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCC-----------------------------cceeee-eccccchHHHHH
Confidence 45789999999999999999999877544331 011134 999999999999
Q ss_pred HHHHhhcCCcceEEeccccc
Q 001668 146 IEGLFLKGDVQVLCTTNTLA 165 (1034)
Q Consensus 146 ve~~F~~G~ikVLVaT~tLa 165 (1034)
+++.|.+|..+|||+|+.+.
T Consensus 173 ~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 173 ALERIESGDFDILITTSQFL 192 (1187)
T ss_pred HHHHHhcCCccEEEEeHHHH
Confidence 99999999999999998643
No 170
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=85.83 E-value=2.6 Score=52.33 Aligned_cols=106 Identities=25% Similarity=0.184 Sum_probs=68.2
Q ss_pred hhcceEEccCCCCHHHHHHHHHHhhcC-Ccc-eEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccc
Q 001668 127 ILYGVGYHNGGLCLKDRNLIEGLFLKG-DVQ-VLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGR 204 (1034)
Q Consensus 127 l~~GV~~hH~gLs~~dR~~ve~~F~~G-~ik-VLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGR 204 (1034)
+.++..-+-|...-.+|+.+.+.|... .|. .|.+|-+.+-||||-+..+||-++.-|+|. +- .|---|
T Consensus 800 l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~-------dD---~QAEDR 869 (941)
T KOG0389|consen 800 LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPY-------DD---KQAEDR 869 (941)
T ss_pred cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCc-------cc---chhHHH
Confidence 444555677999999999999999743 444 579999999999999888888877666652 22 233344
Q ss_pred cCCCCCCCccEEEEEecccc-HHHHHHHhcCcccccchh
Q 001668 205 AGRPPFNDTGTVIIMTRRET-VHLYENLLNGCEMVESQL 242 (1034)
Q Consensus 205 AGR~g~d~~G~aiil~~~~~-~~~y~~ll~~~~pieS~L 242 (1034)
|-|.|..+.-.++-+..... .....++.+....+++.+
T Consensus 870 cHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~l 908 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADL 908 (941)
T ss_pred HHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhh
Confidence 44444445666664444433 334444444444444443
No 171
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=85.17 E-value=1.7 Score=43.65 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=54.5
Q ss_pred ccCCCCHHHHHHHHHHhhcCCc---ceEEeccc--cccccCCCC---eEEEEeccccccCCC--------------C---
Q 001668 134 HNGGLCLKDRNLIEGLFLKGDV---QVLCTTNT--LAHGINLPA---HTVVIKSTQYFNKEK--------------G--- 188 (1034)
Q Consensus 134 hH~gLs~~dR~~ve~~F~~G~i---kVLVaT~t--La~GVNLPa---v~vVI~~t~~y~~~~--------------~--- 188 (1034)
+.-+....+...+.+.|++..- .||+++.- ++.|||+|+ ..|||-+- .|-... +
T Consensus 24 ~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~gl-Pfp~~~d~~~~~~~~~~~~~~~~~ 102 (142)
T smart00491 24 FIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGI-PFPNPDSPILRARLEYLDEKGGIR 102 (142)
T ss_pred EEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEec-CCCCCCCHHHHHHHHHHHHhcCCC
Confidence 3334444455778888986543 58888887 999999997 45667553 221110 0
Q ss_pred ----ccccCCHHHHHHhccccCCCCCCCccEEEEEe
Q 001668 189 ----LYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220 (1034)
Q Consensus 189 ----~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~ 220 (1034)
.+.+.-...+.|.+||+=|.. +..|..+++-
T Consensus 103 ~~~~~~~~~a~~~~~Qa~GR~iR~~-~D~g~i~l~D 137 (142)
T smart00491 103 PFDEVYLFDAMRALAQAIGRAIRHK-NDYGVVVLLD 137 (142)
T ss_pred cHHHHHHHHHHHHHHHHhCccccCc-cceEEEEEEe
Confidence 012334567899999999986 5577666653
No 172
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=84.74 E-value=4.8 Score=47.63 Aligned_cols=85 Identities=19% Similarity=0.233 Sum_probs=61.5
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHH
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145 (1034)
Q Consensus 66 ~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ 145 (1034)
..+.+.+|||+-..--+.+...+.+.. -|.--+-|..+..+|..
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~------------------------------------vg~IRIDGst~s~~R~l 533 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRK------------------------------------VGSIRIDGSTPSHRRTL 533 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcC------------------------------------CCeEEecCCCCchhHHH
Confidence 346789999998877666666665431 12233569999999999
Q ss_pred HHHHhhc-CCcce-EEeccccccccCCCCeEEEEeccccccCC
Q 001668 146 IEGLFLK-GDVQV-LCTTNTLAHGINLPAHTVVIKSTQYFNKE 186 (1034)
Q Consensus 146 ve~~F~~-G~ikV-LVaT~tLa~GVNLPav~vVI~~t~~y~~~ 186 (1034)
.-+.|.. ..++| +++-..++.|+++-+-.+|+--..+|+|.
T Consensus 534 l~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 534 LCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred HHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 9999973 34444 45566788999999988888777677764
No 173
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=84.54 E-value=0.97 Score=38.98 Aligned_cols=49 Identities=31% Similarity=0.510 Sum_probs=34.2
Q ss_pred cccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 489 KQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 489 lQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
+.+||||+..++.|.+ .+.|++.|+.++.+++..+-| +|..+++.+..|
T Consensus 6 LGI~~VG~~~ak~L~~-~f~sl~~l~~a~~e~L~~i~g----IG~~~A~si~~f 54 (64)
T PF12826_consen 6 LGIPGVGEKTAKLLAK-HFGSLEALMNASVEELSAIPG----IGPKIAQSIYEF 54 (64)
T ss_dssp CTSTT--HHHHHHHHH-CCSCHHHHCC--HHHHCTSTT------HHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHH-HcCCHHHHHHcCHHHHhccCC----cCHHHHHHHHHH
Confidence 6799999999999974 567999999999998877754 777776666543
No 174
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=82.62 E-value=0.77 Score=43.30 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=42.9
Q ss_pred HHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCCCChHHHHHHhhccccccccccC
Q 001668 307 KVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLR 376 (1034)
Q Consensus 307 ~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~~s~~~iL~iLs~S~EF~~i~lR 376 (1034)
+++.|...|.| |+++ ..|.+|+.|+.++++|.-+++++.....-+..+++.+.|.-.+ ..+.++
T Consensus 2 A~~~L~~Lgal--d~~~---~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~ 65 (102)
T PF04408_consen 2 ALELLKSLGAL--DENG---NLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSV-RSPFIN 65 (102)
T ss_dssp HHHHHHHTTSB---TTS----B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B--
T ss_pred HHHHHHHCCCC--CCCC---CcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcC-CCcccC
Confidence 56789999999 5555 6799999999999999999998864444456777777766555 555554
No 175
>PRK10689 transcription-repair coupling factor; Provisional
Probab=82.10 E-value=4.6 Score=53.90 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=62.2
Q ss_pred hcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHH
Q 001668 65 YSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRN 144 (1034)
Q Consensus 65 ~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~ 144 (1034)
...+.+++|-|||+.-|...+..+.+.+... ...|+.++++.+..++.
T Consensus 646 ~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~--------------------------------~v~i~~l~g~~s~~e~~ 693 (1147)
T PRK10689 646 VENHKQVAVLVPTTLLAQQHYDNFRDRFANW--------------------------------PVRIEMLSRFRSAKEQT 693 (1147)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHhhccC--------------------------------CceEEEEECCCCHHHHH
Confidence 3467899999999998888888776543211 12377899999999999
Q ss_pred HHHHHhhcCCcceEEeccccc-cccCCCCeEEEEe
Q 001668 145 LIEGLFLKGDVQVLCTTNTLA-HGINLPAHTVVIK 178 (1034)
Q Consensus 145 ~ve~~F~~G~ikVLVaT~tLa-~GVNLPav~vVI~ 178 (1034)
.+.+.+++|.++|||+|.-+. ..+++....+||-
T Consensus 694 ~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 694 QILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred HHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 999999999999999997543 3466666665553
No 176
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=81.41 E-value=3.3 Score=52.11 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=73.1
Q ss_pred hhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHH
Q 001668 64 QYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143 (1034)
Q Consensus 64 ~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR 143 (1034)
.+.+|+++||-||....+..+..++...+. ..|+.+|++|++.+|
T Consensus 241 ~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-----------------------------------~~v~vlHS~Ls~~er 285 (730)
T COG1198 241 VLAQGKQVLVLVPEIALTPQLLARFKARFG-----------------------------------AKVAVLHSGLSPGER 285 (730)
T ss_pred HHHcCCEEEEEeccccchHHHHHHHHHHhC-----------------------------------CChhhhcccCChHHH
Confidence 345677888888888877777777766532 228899999999999
Q ss_pred HHHHHHhhcCCcceEEeccccccccCCCCeEEEEecccc---ccCCCCccccCCHHHHHHhccccC
Q 001668 144 NLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQY---FNKEKGLYMEHDRSTILQMCGRAG 206 (1034)
Q Consensus 144 ~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~---y~~~~~~~~p~s~~~ylQmiGRAG 206 (1034)
..+....++|..+|+|-|..+- =.-+++.-.||-+-.+ |-...+ .-|...++-.+.|+-.
T Consensus 286 ~~~W~~~~~G~~~vVIGtRSAl-F~Pf~~LGLIIvDEEHD~sYKq~~~--prYhARdvA~~Ra~~~ 348 (730)
T COG1198 286 YRVWRRARRGEARVVIGTRSAL-FLPFKNLGLIIVDEEHDSSYKQEDG--PRYHARDVAVLRAKKE 348 (730)
T ss_pred HHHHHHHhcCCceEEEEechhh-cCchhhccEEEEeccccccccCCcC--CCcCHHHHHHHHHHHh
Confidence 9999999999999999998642 3455677777765322 211111 1255666666666543
No 177
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=81.16 E-value=3.5 Score=55.11 Aligned_cols=68 Identities=22% Similarity=0.264 Sum_probs=53.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.+.++||.+|||.-+.+++..+...+...+.. ...++.+|||++..+|...
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~-----------------------------~~~i~~~~Gg~~~~e~~~~ 170 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVG-----------------------------TVNIGAYHSRLPTKEKKEF 170 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc-----------------------------eeeeeeecCCCCHHHHHHH
Confidence 46789999999999998888887654322210 1126678999999999999
Q ss_pred HHHhhcCCcceEEeccc
Q 001668 147 EGLFLKGDVQVLCTTNT 163 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~t 163 (1034)
.+.+++|...|||+|+-
T Consensus 171 ~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 171 MERIENGDFDILITTTM 187 (1171)
T ss_pred HHHHhcCCCCEEEECHH
Confidence 99999999999999984
No 178
>PF13871 Helicase_C_4: Helicase_C-like
Probab=80.55 E-value=2.2 Score=47.62 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=46.6
Q ss_pred HHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCC
Q 001668 145 LIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPF 210 (1034)
Q Consensus 145 ~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~ 210 (1034)
..-+.|.+|...|+|.|...+.|+.+-|-.-+-+.-++..-.. -.|.+....+|..||+-|.+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~l--e~pwsad~aiQ~~GR~hRsnQ 115 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITL--ELPWSADKAIQQFGRTHRSNQ 115 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEe--eCCCCHHHHHHHhcccccccc
Confidence 3456899999999999999999999987544433211111000 167799999999999999874
No 179
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=80.39 E-value=1.4 Score=36.38 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=21.9
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhh
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAE 515 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~ 515 (1034)
|.++.|||+.+|+++++.|++|++||..
T Consensus 4 f~~I~GVG~~tA~~w~~~G~rtl~Dl~~ 31 (52)
T PF10391_consen 4 FTGIWGVGPKTARKWYAKGIRTLEDLRK 31 (52)
T ss_dssp HHTSTT--HHHHHHHHHTT--SHHHHHH
T ss_pred hhhcccccHHHHHHHHHhCCCCHHHHhh
Confidence 6788999999999999999999999964
No 180
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=79.10 E-value=1.4 Score=40.40 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=43.2
Q ss_pred HHHHHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHhCCCC-CChHHHHHHhhc
Q 001668 307 KVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVN-CGLEDALHTVCH 366 (1034)
Q Consensus 307 ~l~~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~~~~~-~s~~~iL~iLs~ 366 (1034)
++..|...|.| |+++ +.|.+|+.|+.++++|.-+++++..... .+..+++.+++.
T Consensus 2 A~~~L~~LgAl--d~~~---~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ 57 (92)
T smart00847 2 ALELLYELGAL--DDDG---RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAM 57 (92)
T ss_pred HHHHHHHCCCc--CCCC---CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 45678888998 5544 6799999999999999999998864443 467777777665
No 181
>PRK14873 primosome assembly protein PriA; Provisional
Probab=78.43 E-value=3.5 Score=51.75 Aligned_cols=73 Identities=8% Similarity=0.133 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCCcceEEecc----ccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEE
Q 001668 142 DRNLIEGLFLKGDVQVLCTTN----TLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI 217 (1034)
Q Consensus 142 dR~~ve~~F~~G~ikVLVaT~----tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~ai 217 (1034)
+|..+.+.|. ++..|||.|. .++-|+ ...+|++.+...+.+.-+-.+....-+.|-+|||||.. +.|.++
T Consensus 460 d~d~~l~~~~-~~~~IlVGTqgaepm~~g~~---~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~--~~G~V~ 533 (665)
T PRK14873 460 GGDQVVDTVD-AGPALVVATPGAEPRVEGGY---GAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA--DGGQVV 533 (665)
T ss_pred ChHHHHHhhc-cCCCEEEECCCCcccccCCc---eEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC--CCCEEE
Confidence 3456788896 5999999998 666222 22234443322222211112234566789999999975 789999
Q ss_pred EEe
Q 001668 218 IMT 220 (1034)
Q Consensus 218 il~ 220 (1034)
|.+
T Consensus 534 iq~ 536 (665)
T PRK14873 534 VVA 536 (665)
T ss_pred EEe
Confidence 875
No 182
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=77.87 E-value=12 Score=46.83 Aligned_cols=81 Identities=25% Similarity=0.211 Sum_probs=53.8
Q ss_pred eEEccCCCCHHHHHHHHHHhhcCC-cc-eEEeccccccccCCC-CeEEEEeccccccCCCCccccCCHHHHHHhccccCC
Q 001668 131 VGYHNGGLCLKDRNLIEGLFLKGD-VQ-VLCTTNTLAHGINLP-AHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGR 207 (1034)
Q Consensus 131 V~~hH~gLs~~dR~~ve~~F~~G~-ik-VLVaT~tLa~GVNLP-av~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR 207 (1034)
..-+-|.-+...|....+.|.++. +. .|++|-+-+.|+||- |-+||| |||. |-|-+- .|-.-||-|
T Consensus 574 ylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII-----fDPd---WNPStD---~QAreRawR 642 (923)
T KOG0387|consen 574 YLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII-----FDPD---WNPSTD---NQARERAWR 642 (923)
T ss_pred EEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE-----ECCC---CCCccc---hHHHHHHHh
Confidence 444568889999999999999664 44 468888999999995 556666 5543 433333 466667777
Q ss_pred CCCCCccEEE-EEecc
Q 001668 208 PPFNDTGTVI-IMTRR 222 (1034)
Q Consensus 208 ~g~d~~G~ai-il~~~ 222 (1034)
-|.-+.-.+| +++..
T Consensus 643 iGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 643 IGQKKDVVVYRLMTAG 658 (923)
T ss_pred hcCccceEEEEEecCC
Confidence 6643333344 45443
No 183
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=77.63 E-value=4.7 Score=32.47 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=36.2
Q ss_pred CCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHH
Q 001668 494 IGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESL 539 (1034)
Q Consensus 494 I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~ 539 (1034)
+++..+.+|.++|+.|+++|+.++++++..+.|..+.....+...+
T Consensus 1 i~~~~~~~L~~~G~~s~e~la~~~~~eL~~i~g~~~e~a~~ii~~a 46 (50)
T TIGR01954 1 IDEEIAQLLVEEGFTTVEDLAYVPIDELLSIEGFDEETAKELINRA 46 (50)
T ss_pred CCHHHHHHHHHcCCCCHHHHHccCHHHHhcCCCCCHHHHHHHHHHH
Confidence 4677889999999999999999999999988775554444444443
No 184
>PRK07758 hypothetical protein; Provisional
Probab=77.33 E-value=4.9 Score=37.32 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhc
Q 001668 491 LPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLS 541 (1034)
Q Consensus 491 LP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~ 541 (1034)
+|.++....+.|.++||.+++||...+++++..+-|.-+.--..|.+.+..
T Consensus 39 ~~~LSvRA~N~Lk~AGI~TL~dLv~~te~ELl~iknlGkKSL~EIkekL~E 89 (95)
T PRK07758 39 LSLLSAPARRALEHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKALEE 89 (95)
T ss_pred CccccHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 678888889999999999999999999999999987333222334444443
No 185
>PRK14701 reverse gyrase; Provisional
Probab=75.80 E-value=6.4 Score=54.24 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=54.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
++.++||.+|||.-+.+++..+...+...+ +...++++||+++..++..+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~------------------------------~~v~v~~~~g~~s~~e~~~~ 170 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKAN------------------------------LDVRLVYYHSNLRKKEKEEF 170 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcC------------------------------CceeEEEEeCCCCHHHHHHH
Confidence 566899999999988888888766432211 11237889999999999999
Q ss_pred HHHhhcCCcceEEeccccc
Q 001668 147 EGLFLKGDVQVLCTTNTLA 165 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~tLa 165 (1034)
.+.+++|..+|||+|+-..
T Consensus 171 ~~~l~~g~~dILV~TPgrL 189 (1638)
T PRK14701 171 LERIENGDFDILVTTAQFL 189 (1638)
T ss_pred HHHHhcCCCCEEEECCchh
Confidence 9999999999999998543
No 186
>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found in association with the N-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain. For example it is found associated with Q9JZR1 from SWISSPROT in IPR002125 from INTERPRO.; PDB: 3BQT_A 3MAB_A.
Probab=75.47 E-value=2.3 Score=38.56 Aligned_cols=34 Identities=35% Similarity=0.542 Sum_probs=26.3
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHH
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRI 521 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~l 521 (1034)
|..||++|+...+.|.+.||+|+++|......+.
T Consensus 5 l~~LpNig~~~e~~L~~vGI~t~~~L~~~Ga~~a 38 (81)
T PF04994_consen 5 LKDLPNIGPKSERMLAKVGIHTVEDLRELGAVEA 38 (81)
T ss_dssp GCGSTT--HHHHHHHHHTT--SHHHHHHHHHHHH
T ss_pred hhhCCCCCHHHHHHHHHcCCCCHHHHHHhCHHHH
Confidence 8899999999999999999999999998765443
No 187
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=75.09 E-value=8.2 Score=47.19 Aligned_cols=74 Identities=22% Similarity=0.389 Sum_probs=55.4
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHh
Q 001668 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF 150 (1034)
Q Consensus 71 ~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F 150 (1034)
+||.+|||.-|..++..+.......+ ...++.++||.+...+. +.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~-------------------------------~~~~~~i~GG~~~~~q~---~~l 147 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLG-------------------------------GLRVAVVYGGVSIRKQI---EAL 147 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcC-------------------------------CccEEEEECCCCHHHHH---HHH
Confidence 99999999988888887766532110 23388999998887776 445
Q ss_pred hcCCcceEEecc-----ccccc-cCCCCeEEEEec
Q 001668 151 LKGDVQVLCTTN-----TLAHG-INLPAHTVVIKS 179 (1034)
Q Consensus 151 ~~G~ikVLVaT~-----tLa~G-VNLPav~vVI~~ 179 (1034)
+.| .+|||+|+ .+.+| +++..+.++|.+
T Consensus 148 ~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 148 KRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred hcC-CCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 557 99999998 46666 788888887754
No 188
>PTZ00035 Rad51 protein; Provisional
Probab=74.85 E-value=4.3 Score=46.83 Aligned_cols=55 Identities=27% Similarity=0.265 Sum_probs=49.6
Q ss_pred cccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 489 KQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 489 lQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+|-|++++..+++|+++|+.|+.+|+.+++.++..+.|.+.....+|.+.+..+.
T Consensus 26 l~~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis~~~~~~i~~~~~~~~ 80 (337)
T PTZ00035 26 LQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLV 80 (337)
T ss_pred HhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHHhc
Confidence 3448899999999999999999999999999999999988888888888888764
No 189
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=71.30 E-value=2.7 Score=47.79 Aligned_cols=29 Identities=41% Similarity=0.740 Sum_probs=27.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEA 516 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~ 516 (1034)
|+++||||+..+++++..|++|+++|..+
T Consensus 87 l~~i~GiGpk~a~~l~~lGi~sl~dL~~a 115 (307)
T cd00141 87 LLRVPGVGPKTARKLYELGIRTLEDLRKA 115 (307)
T ss_pred HHcCCCCCHHHHHHHHHcCCCCHHHHHHH
Confidence 88999999999999999999999999985
No 190
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=70.86 E-value=6.2 Score=45.04 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=48.6
Q ss_pred cccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 489 KQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 489 lQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+|-+++++..+++|+++|+.|+.++..+++.++..+.|.++.-..++.+.+..+.
T Consensus 4 ~~~~g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~ 58 (313)
T TIGR02238 4 LQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKII 58 (313)
T ss_pred hhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhh
Confidence 3446799999999999999999999999999999999988888888888887763
No 191
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=70.32 E-value=9.3 Score=44.05 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=28.6
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCCh
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADP 518 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~ 518 (1034)
|+++||||+..|+.+++.||+|+++|..+..
T Consensus 91 l~~i~GiGpk~a~~l~~lGi~tl~eL~~a~~ 121 (334)
T smart00483 91 FTNVFGVGPKTAAKWYRKGIRTLEELKKNKE 121 (334)
T ss_pred HHccCCcCHHHHHHHHHhCCCCHHHHHhccc
Confidence 8999999999999999999999999987543
No 192
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=69.42 E-value=7 Score=44.68 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=47.5
Q ss_pred cccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 489 KQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 489 lQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
+|-+++++..+++|+++|+.|+.+|..+++.++..+.+.+......+...+..+
T Consensus 4 ~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~L~~i~~ls~~~~~~~~~~~~~~ 57 (316)
T TIGR02239 4 LEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKL 57 (316)
T ss_pred hhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 456779999999999999999999999999999999998887777777777754
No 193
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=68.66 E-value=6.9 Score=45.24 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=48.6
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
-+|-+|+++..+++|+++|+.|+.+|+.+++.++..+.|.++.-..+|.+.+..+
T Consensus 33 ~l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~ 87 (344)
T PLN03187 33 KLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKL 87 (344)
T ss_pred HHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 3455789999999999999999999999999999999998888888888777775
No 194
>PRK14133 DNA polymerase IV; Provisional
Probab=67.62 E-value=9.8 Score=43.97 Aligned_cols=52 Identities=25% Similarity=0.420 Sum_probs=44.4
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
+..|||+|...+++|.+.||+|+.||++++.+.+....| +.|..+.+.+.-.
T Consensus 175 v~~l~gig~~~~~~L~~~Gi~ti~dl~~l~~~~L~~rfG---~~g~~l~~~a~G~ 226 (347)
T PRK14133 175 ISKVHGIGKKSVEKLNNIGIYTIEDLLKLSREFLIEYFG---KFGVEIYERIRGI 226 (347)
T ss_pred ccccCCCCHHHHHHHHHcCCccHHHHhhCCHHHHHHHHh---HHHHHHHHHhCCC
Confidence 889999999999999999999999999999999888876 3566666666543
No 195
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=67.36 E-value=4.2 Score=39.82 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=34.9
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhh
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVT 525 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll 525 (1034)
|..+|||+...+..|..+||.|+.+|+..+++++..-+
T Consensus 55 L~ri~gi~~~~a~LL~~AGv~Tv~~LA~~~p~~L~~~l 92 (122)
T PF14229_consen 55 LMRIPGIGPQYAELLEHAGVDTVEELAQRNPQNLHQKL 92 (122)
T ss_pred hhhcCCCCHHHHHHHHHhCcCcHHHHHhCCHHHHHHHH
Confidence 77899999999999999999999999999999986544
No 196
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=67.13 E-value=98 Score=37.11 Aligned_cols=122 Identities=13% Similarity=0.096 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
..+.+|||++|==+=.++-..|.+. + ...+.+|...++.+-..+
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~----~--------------------------------~sF~~i~EYts~~~isRA 342 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKE----N--------------------------------ISFVQISEYTSNSDISRA 342 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhc----C--------------------------------CeEEEecccCCHHHHHHH
Confidence 4578999999976655555555422 1 126678888999999999
Q ss_pred HHHhhcCCcceEEecccc--ccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCC-CCCCCccEEEEEeccc
Q 001668 147 EGLFLKGDVQVLCTTNTL--AHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGR-PPFNDTGTVIIMTRRE 223 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~tL--a~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR-~g~d~~G~aiil~~~~ 223 (1034)
-..|..|..++|+.|.=+ =+-..+.++..||- |.++.. |.=-.+++.|++.... .+....+.|.++...-
T Consensus 343 R~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~P~~---p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~ 415 (442)
T PF06862_consen 343 RSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGPPEN---PQFYSELLNMLDESSGGEVDAADATVTVLYSKY 415 (442)
T ss_pred HHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECCCCC---hhHHHHHHhhhcccccccccccCceEEEEecHh
Confidence 999999999999999743 23344556667775 444331 2223455666655433 1112345666665554
Q ss_pred cHHHHHHH
Q 001668 224 TVHLYENL 231 (1034)
Q Consensus 224 ~~~~y~~l 231 (1034)
+.-..+++
T Consensus 416 D~~~LErI 423 (442)
T PF06862_consen 416 DALRLERI 423 (442)
T ss_pred HHHHHHHH
Confidence 43333333
No 197
>PRK03352 DNA polymerase IV; Validated
Probab=67.11 E-value=9.7 Score=43.99 Aligned_cols=53 Identities=30% Similarity=0.345 Sum_probs=44.2
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
+..|||||....++|.+.||+|+.||+.++...+....|. ..|..+...++-.
T Consensus 179 l~~l~gig~~~~~~L~~~Gi~ti~dl~~l~~~~L~~~fG~--~~~~~l~~~a~G~ 231 (346)
T PRK03352 179 TDALWGVGPKTAKRLAALGITTVADLAAADPAELAATFGP--TTGPWLLLLARGG 231 (346)
T ss_pred HHHcCCCCHHHHHHHHHcCCccHHHHhcCCHHHHHHHhCh--HHHHHHHHHhCCC
Confidence 8999999999999999999999999999999988887652 2456666665544
No 198
>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed
Probab=66.15 E-value=9.2 Score=45.51 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=46.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+..|||||...+++|.+.||+|+.||+++++..+....| ..|..+...+.-..
T Consensus 181 v~~l~GiG~~~~~~L~~lGi~TigdL~~~~~~~L~~~fG---~~~~~l~~~a~G~~ 233 (422)
T PRK03609 181 VEEVWGVGRRISKKLNAMGIKTALDLADTNIRFIRKHFN---VVLERTVRELRGEP 233 (422)
T ss_pred hhhcCCccHHHHHHHHHcCCCcHHHHhcCCHHHHHHHHC---HHHHHHHHHhCCCC
Confidence 789999999999999999999999999999999888776 35677777777664
No 199
>cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.
Probab=65.92 E-value=9.4 Score=44.05 Aligned_cols=52 Identities=35% Similarity=0.489 Sum_probs=43.3
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
+..|||||....++|.+.|++|+.||+..+.+.+....| ..|..+.+.+.-.
T Consensus 178 l~~l~gig~~~~~~L~~~Gi~ti~dL~~~~~~~L~~rfG---~~~~~l~~~a~G~ 229 (344)
T cd01700 178 VGDVWGIGRRTAKKLNAMGIHTAGDLAQADPDLLRKKFG---VVGERLVRELNGI 229 (344)
T ss_pred hhhcCccCHHHHHHHHHcCCCcHHHHhcCCHHHHHHHHH---HHHHHHHHHhCCC
Confidence 889999999999999999999999999999988887765 2455566665543
No 200
>PRK02406 DNA polymerase IV; Validated
Probab=65.74 E-value=11 Score=43.45 Aligned_cols=53 Identities=30% Similarity=0.530 Sum_probs=45.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+..|||||....++|.+.|++|+.||+.++.+.+...+| ..|..+.+.+.-.-
T Consensus 170 i~~l~giG~~~~~~L~~~Gi~ti~dl~~l~~~~L~~~fG---~~~~~l~~~a~G~d 222 (343)
T PRK02406 170 VEKIPGVGKVTAEKLHALGIYTCADLQKYDLAELIRHFG---KFGRRLYERARGID 222 (343)
T ss_pred cchhcCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHHh---HHHHHHHHHhCCCC
Confidence 889999999999999999999999999999999988876 35667777777653
No 201
>PRK01216 DNA polymerase IV; Validated
Probab=64.02 E-value=10 Score=43.97 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=42.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhc
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLS 541 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~ 541 (1034)
+..|||||....++|.+.|++|++||+.++.+.+....|. ..|..+.+.+..
T Consensus 180 i~~l~giG~~~~~~L~~~Gi~TigdL~~~~~~~L~~rfG~--~~~~~L~~~a~G 231 (351)
T PRK01216 180 IADIPGIGDITAEKLKKLGVNKLVDTLRIEFDELKGIIGE--AKAKYLFSLARN 231 (351)
T ss_pred cccccCCCHHHHHHHHHcCCCcHHHHhcCCHHHHHHHHCH--HHHHHHHHHhCC
Confidence 8899999999999999999999999999998888887662 245556555543
No 202
>cd00424 PolY Y-family of DNA polymerases. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Most TLS polymerases are members of the Y-family, including Pol eta, Pol kappa/IV, Pol iota, Rev1, and Pol V, which is found exclusively in bacteria. In eukaryotes, the B-family polymerase Pol zeta also functions as a TLS polymerase. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in ord
Probab=62.07 E-value=12 Score=43.20 Aligned_cols=53 Identities=34% Similarity=0.500 Sum_probs=42.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCC-hHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEAD-PRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~-~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+..|||||....++|.+.|++|+.||+.++ ...+....| ..|..+.+.+.-.-
T Consensus 175 i~~l~giG~~~~~~L~~~Gi~ti~dl~~~~~~~~l~~~fg---~~~~~l~~~a~G~d 228 (343)
T cd00424 175 LTDLPGIGAVTAKRLEAVGINPIGDLLAASPDALLALWGG---VSGERLWYALRGID 228 (343)
T ss_pred hhhcCCCCHHHHHHHHHcCCCcHHHHhcCCHHHHHHHHhh---HHHHHHHHHhCCcC
Confidence 788999999999999999999999999999 666665544 35666777666653
No 203
>PRK03348 DNA polymerase IV; Provisional
Probab=61.74 E-value=11 Score=45.27 Aligned_cols=54 Identities=26% Similarity=0.425 Sum_probs=46.5
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+..|||||....++|.+.||+|+.||+.++..++...+| ...|..+.+.+.-..
T Consensus 182 v~~L~GIG~~t~~~L~~lGI~TigDLa~l~~~~L~~~fG--~~~g~~L~~~a~G~d 235 (454)
T PRK03348 182 VRRLWGIGPVTEEKLHRLGIETIGDLAALSEAEVANLLG--ATVGPALHRLARGID 235 (454)
T ss_pred ccccCCCCHHHHHHHHHcCCccHHHHhcCCHHHHHHHHC--HHHHHHHHHHHcCCC
Confidence 899999999999999999999999999999999988875 236777777777664
No 204
>PRK14973 DNA topoisomerase I; Provisional
Probab=60.59 E-value=11 Score=49.34 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=43.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHH
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHI 535 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I 535 (1034)
|++.|||+...+++++++|++++++|..++++++..+.|.+++-....
T Consensus 804 ~~~~~gv~~~~~~~~~~~G~~~~~d~~~a~p~~La~~~g~~~~~~~~~ 851 (936)
T PRK14973 804 RLKEIGVPAVSLKKYQEAGFDTPEDFCSVHPAYLALKTGISPETICRH 851 (936)
T ss_pred hhcccCCCHHHHHHHHHhcCCCHHHHHhcCHHHHhcCCCCChhhHHHH
Confidence 899999999999999999999999999999999999999876655444
No 205
>PRK03103 DNA polymerase IV; Reviewed
Probab=60.48 E-value=15 Score=43.47 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=43.9
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
+..|||||....++|.+.||+|++||++++.+.+....| ..|..+.+.+.-.
T Consensus 183 i~~l~gig~~~~~~L~~~Gi~tigdl~~~~~~~L~~~fG---~~~~~l~~~a~G~ 234 (409)
T PRK03103 183 VRKLFGVGSRMEKHLRRMGIRTIGQLANTPLERLKKRWG---INGEVLWRTANGI 234 (409)
T ss_pred HhhcCCccHHHHHHHHHcCCCCHHHHhcCCHHHHHHHHC---HHHHHHHHHhcCC
Confidence 789999999999999999999999999999988887766 2456666666654
No 206
>PRK03858 DNA polymerase IV; Validated
Probab=60.25 E-value=13 Score=43.85 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=44.1
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
+..|||||...+++|.+.||+|+.||++++...+....|. ..|..+...+...
T Consensus 175 l~~l~Gig~~~~~~L~~~Gi~t~~dl~~l~~~~L~~~fG~--~~~~~l~~~a~G~ 227 (396)
T PRK03858 175 VRRLWGVGPVTAAKLRAHGITTVGDVAELPESALVSLLGP--AAGRHLHALAHNR 227 (396)
T ss_pred hhhcCCCCHHHHHHHHHhCCCcHHHHhcCCHHHHHHHhCc--HHHHHHHHHhCCC
Confidence 8899999999999999999999999999999988887762 2466666666443
No 207
>PRK02794 DNA polymerase IV; Provisional
Probab=59.64 E-value=15 Score=43.69 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=46.2
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+..|||||....++|.+.||+|++||+.++...+....| ..|..+.+.+.-..
T Consensus 211 l~~L~GiG~~~~~~L~~~GI~tigdL~~l~~~~L~~rfG---~~g~~l~~~a~G~d 263 (419)
T PRK02794 211 VGIIWGVGPATAARLARDGIRTIGDLQRADEADLMRRFG---SMGLRLWRLARGID 263 (419)
T ss_pred hhhhCCCCHHHHHHHHHhccchHHHHhhCCHHHHHHHHh---HHHHHHHHHhCCCC
Confidence 899999999999999999999999999999999888876 35677777777654
No 208
>PRK08609 hypothetical protein; Provisional
Probab=59.61 E-value=8.3 Score=47.76 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=27.2
Q ss_pred ccccCCCCHHHHHHHH-hCCCCCHHHHhhCC
Q 001668 488 LKQLPGIGMVTAKALH-SMGIKSFETLAEAD 517 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~-~~gi~Sl~~L~~~~ 517 (1034)
|+++||+|++.+++++ ..||+|+++|..+.
T Consensus 90 l~~i~GiGpk~a~~l~~~lGi~tl~~L~~a~ 120 (570)
T PRK08609 90 LLKLPGLGGKKIAKLYKELGVVDKESLKEAC 120 (570)
T ss_pred HhcCCCCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8899999999999998 47999999999743
No 209
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=59.44 E-value=13 Score=42.99 Aligned_cols=54 Identities=28% Similarity=0.304 Sum_probs=46.7
Q ss_pred cccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 489 KQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 489 lQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
+|-+|+++..+++|+++|+.|+.++..+++.++..+.+.+.....++...+..+
T Consensus 31 l~~~gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i~~is~~~~~~~~~~~~~~ 84 (342)
T PLN03186 31 LQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASKL 84 (342)
T ss_pred HHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 344789999999999999999999999999999999998887777777777553
No 210
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=58.85 E-value=15 Score=36.18 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=26.8
Q ss_pred cccccCCCCHHHHHHHHhCC-CCCHHHHhhCC
Q 001668 487 LLKQLPGIGMVTAKALHSMG-IKSFETLAEAD 517 (1034)
Q Consensus 487 ~LlQLP~I~~~~ak~L~~~g-i~Sl~~L~~~~ 517 (1034)
.|.|||||++..|+++.++| +++++||.+.+
T Consensus 62 el~~lpGigP~~A~~IV~nGpf~sveDL~~V~ 93 (132)
T PRK02515 62 AFRQFPGMYPTLAGKIVKNAPYDSVEDVLNLP 93 (132)
T ss_pred HHHHCCCCCHHHHHHHHHCCCCCCHHHHHcCC
Confidence 48999999999999998765 89999998754
No 211
>cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a
Probab=58.34 E-value=18 Score=41.28 Aligned_cols=53 Identities=30% Similarity=0.532 Sum_probs=44.3
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+..|||+|...+++|.+.|++|+.||+.++...+....| ..|..+.+.+.-.-
T Consensus 173 l~~l~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g---~~~~~l~~~~~G~~ 225 (334)
T cd03586 173 VRKIPGVGKVTAEKLKELGIKTIGDLAKLDVELLKKLFG---KSGRRLYELARGID 225 (334)
T ss_pred chhhCCcCHHHHHHHHHcCCcCHHHHHcCCHHHHHHHHh---HHHHHHHHHhCCCC
Confidence 889999999999999999999999999999988887654 35666666666543
No 212
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=57.37 E-value=16 Score=31.78 Aligned_cols=47 Identities=19% Similarity=0.399 Sum_probs=33.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHH
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESL 539 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~ 539 (1034)
+-+| ++.......|.++||.|+++|...+.+++..+-| +|..-.+.+
T Consensus 14 I~~L-~LS~Ra~n~L~~~~I~tv~dL~~~s~~~L~~i~n----~G~ksl~EI 60 (66)
T PF03118_consen 14 IEDL-GLSVRAYNCLKRAGIHTVGDLVKYSEEDLLKIKN----FGKKSLEEI 60 (66)
T ss_dssp GGGS-TSBHHHHHHHHCTT--BHHHHHCS-HHHHHTSTT----SHHHHHHHH
T ss_pred HHHh-CCCHHHHHHHHHhCCcCHHHHHhCCHHHHHhCCC----CCHhHHHHH
Confidence 3444 5678888899999999999999999998887765 776654444
No 213
>PRK01810 DNA polymerase IV; Validated
Probab=55.62 E-value=16 Score=43.14 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=44.6
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
+..|||||+..+++|.+.|++|+.||+.++...+....| ..|..+.+.+.-.
T Consensus 181 v~~l~giG~~~~~~L~~~Gi~tigdL~~~~~~~L~~rfG---~~g~~l~~~a~G~ 232 (407)
T PRK01810 181 VGEMHGIGEKTAEKLKDIGIQTIGDLAKADEHILRAKLG---INGVRLQRRANGI 232 (407)
T ss_pred HhhcCCcCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHHh---HHHHHHHHHhcCC
Confidence 788999999999999999999999999999988888776 2566677777654
No 214
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=55.09 E-value=22 Score=42.98 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=45.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHHh
Q 001668 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF 150 (1034)
Q Consensus 71 ~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~F 150 (1034)
.|||.|||.-|..+.+.|...+... ...|+.+-|||+..-++.+++.
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t--------------------------------~i~v~si~GGLavqKQqRlL~~- 312 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKT--------------------------------QIRVASITGGLAVQKQQRLLNQ- 312 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcccc--------------------------------CeEEEEeechhHHHHHHHHHhc-
Confidence 8999999999988888886653222 2338889999999888877765
Q ss_pred hcCCcceEEecccccc
Q 001668 151 LKGDVQVLCTTNTLAH 166 (1034)
Q Consensus 151 ~~G~ikVLVaT~tLa~ 166 (1034)
.-.|+|||+-=-|
T Consensus 313 ---~p~IVVATPGRlw 325 (731)
T KOG0347|consen 313 ---RPDIVVATPGRLW 325 (731)
T ss_pred ---CCCEEEecchHHH
Confidence 5578999974333
No 215
>cd01703 PolY_Pol_iota DNA Polymerase iota. Pol iota, also called Rad30B, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol iota is thought to be one of the least efficient polymerases, particularly when opposite pyrimidines; it can incorporate the correct nucleotide opposite a purine much more efficiently than opposite a pyrimidine, and prefers to insert guanosine instead of adenosine opposite thymidine. Pol iota is believed to use Hoogsteen rather than Watson-Crick base pairing, which may explain the varying efficiency for different template nucleotides.
Probab=54.74 E-value=20 Score=42.19 Aligned_cols=54 Identities=31% Similarity=0.410 Sum_probs=44.4
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCC---------------hHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEAD---------------PRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~---------------~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+.-|||||....++|.+.||.|+.+|+..+ ...+....|. ..|..+.+.++-+.
T Consensus 174 v~~l~GiG~~~~~kL~~~GI~tigdl~~~~~~~~~~~~~~~~~~s~~~L~~~fG~--~~g~~l~~~a~G~d 242 (379)
T cd01703 174 LRKIPGIGYKTAAKLEAHGISSVRDLQEFSNRNRQTVGAAPSLLELLLMVKEFGE--GIGQRIWKLLFGRD 242 (379)
T ss_pred ccccCCcCHHHHHHHHHcCCCcHHHHHhCCcccccccccccccccHHHHHHHHCH--HHHHHHHHHHCCCC
Confidence 788999999999999999999999999998 6677666541 24677777777765
No 216
>COG2251 Predicted nuclease (RecB family) [General function prediction only]
Probab=54.69 E-value=18 Score=42.60 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhC
Q 001668 466 AVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTG 526 (1034)
Q Consensus 466 ~l~~l~L~q~L~QalW~~~~~~LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~ 526 (1034)
+..|.-.-||..++.=.++ |.=+|||++...+.|++.||+|+.+|++++...++.+.|
T Consensus 208 C~~C~f~p~C~~~a~e~~~---L~Lv~Gi~~~r~~~l~~~GI~Ti~~LA~~~~~~~~~~~g 265 (474)
T COG2251 208 CTTCQFEPQCESEALEEDD---LSLVPGITPSRYDVLEEVGITTIEDLADASLPILELVAG 265 (474)
T ss_pred hhHhhcchhhhHHHhhccc---eeccCCCCHHHHHHHHHcCcchHHHHHhccccchhhhhh
Confidence 4445556677766654444 667999999999999999999999999999888887765
No 217
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=54.63 E-value=6.8 Score=28.63 Aligned_cols=23 Identities=43% Similarity=0.423 Sum_probs=16.4
Q ss_pred CCCCcccccccCCCCHHHHHHHH
Q 001668 481 WDDSPYLLKQLPGIGMVTAKALH 503 (1034)
Q Consensus 481 W~~~~~~LlQLP~I~~~~ak~L~ 503 (1034)
-+.+...|.+|||||+.+|..+.
T Consensus 6 ~pas~eeL~~lpGIG~~tA~~I~ 28 (30)
T PF00633_consen 6 IPASIEELMKLPGIGPKTANAIL 28 (30)
T ss_dssp HTSSHHHHHTSTT-SHHHHHHHH
T ss_pred CCCCHHHHHhCCCcCHHHHHHHH
Confidence 34444459999999999998764
No 218
>PRK09401 reverse gyrase; Reviewed
Probab=54.57 E-value=30 Score=46.52 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=51.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.+.++||.+|||.-+.+++..+...+...+ +...+...|++++..++...
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~------------------------------~~~~~~~g~~~~~~~ek~~~ 171 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVG------------------------------CGVKILYYHSSLKKKEKEEF 171 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcC------------------------------ceEEEEEccCCcchhHHHHH
Confidence 478899999999999999988877643211 11234556778888888888
Q ss_pred HHHhhcCCcceEEecc
Q 001668 147 EGLFLKGDVQVLCTTN 162 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~ 162 (1034)
.+.+..|...|+|+|+
T Consensus 172 ~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 172 LERLKEGDFDILVTTS 187 (1176)
T ss_pred HHHHhcCCCCEEEECH
Confidence 8999999999999997
No 219
>cd01701 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesion synthesis (TLS) polymerase found in eukaryotes. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. Enzymatically, it catalyzes the specific insertion of dCMP opposite abasic sites. Rev1 interacts with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7). Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Probab=53.21 E-value=20 Score=42.41 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=46.2
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCC--hHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEAD--PRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~--~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+..|||||...+++|.+.|+.|+.+|..++ ...+....| ...|..+.+.+.-..
T Consensus 224 v~~l~GIG~~~~~~L~~~Gi~t~~dl~~~~~~~~~L~~~fG--~~~g~~L~~~a~G~d 279 (404)
T cd01701 224 VGDLPGVGSSLAEKLVKLFGDTCGGLELRSKTKEKLQKVLG--PKTGEKLYDYCRGID 279 (404)
T ss_pred HhHhCCCCHHHHHHHHHcCCcchHHHHhCcccHHHHHHHHC--HHHHHHHHHHhCCcC
Confidence 889999999999999999999999999998 888888775 225777777777765
No 220
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=52.20 E-value=54 Score=41.27 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
...++||.||||.-|..++..+....... ....+..+|||.+...+...
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~-------------------------------~~i~v~~~~gG~~~~~q~~~ 121 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHM-------------------------------RGVNVVALYGGQRYDVQLRA 121 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhc-------------------------------CCceEEEEECCcCHHHHHHH
Confidence 34579999999999888888776542110 12237788899876554332
Q ss_pred HHHhhcCCcceEEecc-----ccccc-cCCCCeEEEEec
Q 001668 147 EGLFLKGDVQVLCTTN-----TLAHG-INLPAHTVVIKS 179 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~-----tLa~G-VNLPav~vVI~~ 179 (1034)
+ .+...|||+|+ .+.++ +++..+.+||.+
T Consensus 122 ---l-~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 122 ---L-RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred ---h-cCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 2 24578999995 33333 678888877754
No 221
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=50.87 E-value=48 Score=39.43 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=51.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
+.++||.+||+.-+..++..+...... ....++.++||.....+..+.
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~--------------------------------~~~~v~~~~gg~~~~~~~~~l 120 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKH--------------------------------THLDIATITGGVAYMNHAEVF 120 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHcc--------------------------------CCcEEEEEECCCCHHHHHHHh
Confidence 357999999999888888777654221 123488899999877665433
Q ss_pred HHhhcCCcceEEeccc------cccccCCCCeEEEEecc
Q 001668 148 GLFLKGDVQVLCTTNT------LAHGINLPAHTVVIKST 180 (1034)
Q Consensus 148 ~~F~~G~ikVLVaT~t------La~GVNLPav~vVI~~t 180 (1034)
.+...|||+|+- ....+++..+.+||-+.
T Consensus 121 ----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 121 ----SENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred ----cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 356789999972 12345677777777543
No 222
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=50.04 E-value=49 Score=34.50 Aligned_cols=77 Identities=19% Similarity=0.215 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.+.++||.|+++.-+...+..+....... ...+..+||+.+..++...
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 115 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHT--------------------------------NLKVVVIYGGTSIDKQIRK 115 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccC--------------------------------CceEEEEECCCCHHHHHHH
Confidence 45679999999998888887776542111 1126678898887665433
Q ss_pred HHHhhcCCcceEEeccc-----cccc-cCCCCeEEEEec
Q 001668 147 EGLFLKGDVQVLCTTNT-----LAHG-INLPAHTVVIKS 179 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~t-----La~G-VNLPav~vVI~~ 179 (1034)
. .+...|+|+|+- +..+ .+++....||-+
T Consensus 116 ~----~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 116 L----KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred h----cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 2 266789999962 2222 456666666644
No 223
>COG3743 Uncharacterized conserved protein [Function unknown]
Probab=49.00 E-value=27 Score=34.51 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=34.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhh
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVT 525 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll 525 (1034)
|.-|-|||++..+.|...||.++.||+.....++..+-
T Consensus 69 Lt~I~GIGPk~e~~Ln~~GI~tfaQIAAwt~~di~~id 106 (133)
T COG3743 69 LTRISGIGPKLEKVLNELGIFTFAQIAAWTRADIAWID 106 (133)
T ss_pred chhhcccCHHHHHHHHHcCCccHHHHHhcCHHHHHHHH
Confidence 88999999999999999999999999998888877654
No 224
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=48.66 E-value=29 Score=41.31 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=53.2
Q ss_pred eEEccCCCCHHHHHHHHHHhhcC-CcceE-EeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCC
Q 001668 131 VGYHNGGLCLKDRNLIEGLFLKG-DVQVL-CTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRP 208 (1034)
Q Consensus 131 V~~hH~gLs~~dR~~ve~~F~~G-~ikVL-VaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~ 208 (1034)
+.-+-|+|++..|....+.|++. .++|+ ++--..+..+||-....|++-+-.|+|. +.-...+=+||+|.-
T Consensus 665 cVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpa----Ve~Qa~DRiHRIGQ~--- 737 (791)
T KOG1002|consen 665 CVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPA----VEWQAQDRIHRIGQY--- 737 (791)
T ss_pred EEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHH----HHhhhhhhHHhhcCc---
Confidence 34467999999999999999866 56664 4445555667998888888777677764 223344455555532
Q ss_pred CCCCccEEEEEe
Q 001668 209 PFNDTGTVIIMT 220 (1034)
Q Consensus 209 g~d~~G~aiil~ 220 (1034)
+.-.++-+|
T Consensus 738 ---rPvkvvrf~ 746 (791)
T KOG1002|consen 738 ---RPVKVVRFC 746 (791)
T ss_pred ---cceeEEEee
Confidence 344555444
No 225
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=48.14 E-value=35 Score=42.21 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=43.5
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhc
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLS 541 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~ 541 (1034)
|.++||||+.+.++|-+ ...|++++..++.+++..+.|.+......|.+.++.
T Consensus 516 L~~I~GiG~kr~~~LL~-~Fgs~~~I~~As~eeL~~v~gi~~~~A~~I~~~l~~ 568 (574)
T PRK14670 516 YTKIKGIGEKKAKKILK-SLGTYKDILLLNEDEIAEKMKINIKMAKKIKKFAEK 568 (574)
T ss_pred cccCCCCCHHHHHHHHH-HhCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 89999999999999875 366999999999999999977666666666666543
No 226
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=48.10 E-value=31 Score=33.80 Aligned_cols=32 Identities=38% Similarity=0.482 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHhCCCCCHHHHhhCChHHHHH
Q 001668 492 PGIGMVTAKALHSMGIKSFETLAEADPRRIEI 523 (1034)
Q Consensus 492 P~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~ 523 (1034)
||+++..+.+|.+.||+|.++|.+..+.....
T Consensus 1 pgi~~~~~~~L~~~GI~t~~~Ll~~~~~~~~r 32 (122)
T PF14229_consen 1 PGIGPKEAAKLKAAGIKTTGDLLEAGDTPLGR 32 (122)
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHHcCCCHHHH
Confidence 89999999999999999999999976555444
No 227
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=47.82 E-value=21 Score=26.44 Aligned_cols=29 Identities=38% Similarity=0.599 Sum_probs=21.1
Q ss_pred HHhhcCCCCcccccccCCCCHHHHHHHHhCCC
Q 001668 476 LYQRLWDDSPYLLKQLPGIGMVTAKALHSMGI 507 (1034)
Q Consensus 476 L~QalW~~~~~~LlQLP~I~~~~ak~L~~~gi 507 (1034)
+.+-+|+= | +..+||||..+.++|.+.||
T Consensus 4 v~~~l~~l--p-i~~~~GIG~kt~~kL~~~GI 32 (32)
T PF11798_consen 4 VPEFLWPL--P-IRKFWGIGKKTAKKLNKLGI 32 (32)
T ss_dssp HHHHHHCS--B-GGGSTTS-HHHHHHHHCTT-
T ss_pred HHHHHhcC--C-HHhhCCccHHHHHHHHHccC
Confidence 33445654 4 89999999999999998775
No 228
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=47.57 E-value=16 Score=45.99 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHhhcC----CcceEEecccccccc-C----CCCeEEEEecc
Q 001668 136 GGLCLKDRNLIEGLFLKG----DVQVLCTTNTLAHGI-N----LPAHTVVIKST 180 (1034)
Q Consensus 136 ~gLs~~dR~~ve~~F~~G----~ikVLVaT~tLa~GV-N----LPav~vVI~~t 180 (1034)
-.++.-+.+++..-.-+. -|.||.-|....--+ | .||..+||+.-
T Consensus 637 t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincV 690 (1516)
T KOG1832|consen 637 TSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCV 690 (1516)
T ss_pred EecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheee
Confidence 556666666655533322 255666555443333 2 35777777643
No 229
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.62 E-value=56 Score=40.62 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=49.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHH
Q 001668 69 KSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEG 148 (1034)
Q Consensus 69 ~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~ 148 (1034)
.++||.|+||.-|..++..+...... +...++.+|||.+...+....
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~--------------------------------~~i~v~~l~Gg~~~~~q~~~l- 131 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGAD--------------------------------LGLRFALVYGGVDYDKQRELL- 131 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhcc--------------------------------CCceEEEEECCCCHHHHHHHH-
Confidence 57999999999988888776554211 122378889998876654333
Q ss_pred HhhcCCcceEEecc-----cccc--ccCCCCeEEEEec
Q 001668 149 LFLKGDVQVLCTTN-----TLAH--GINLPAHTVVIKS 179 (1034)
Q Consensus 149 ~F~~G~ikVLVaT~-----tLa~--GVNLPav~vVI~~ 179 (1034)
.+...|||+|+ .+.. .+++..+.+||-+
T Consensus 132 ---~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 132 ---QQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred ---hCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 34578999996 2222 3567677766643
No 230
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=45.40 E-value=42 Score=41.50 Aligned_cols=50 Identities=22% Similarity=0.376 Sum_probs=40.9
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHH
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESL 539 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~ 539 (1034)
|.++||||+.+.++|-+ ...|++.+..++.+++..+ |.+....+.|.+.+
T Consensus 516 Ld~I~GiG~kr~~~Ll~-~Fgs~~~ik~As~eeL~~v-gi~~~~A~~I~~~l 565 (567)
T PRK14667 516 LDKIKGIGEVKKEIIYR-NFKTLYDFLKADDEELKKL-GIPPSVKQEVKKYL 565 (567)
T ss_pred cccCCCCCHHHHHHHHH-HhCCHHHHHhCCHHHHHHc-CCCHHHHHHHHHHh
Confidence 89999999999999875 3669999999999999998 76555666665544
No 231
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=43.37 E-value=23 Score=30.48 Aligned_cols=30 Identities=47% Similarity=0.561 Sum_probs=21.3
Q ss_pred cccccCCCCHHHHHHHHh-----CCCCCHHHHhhC
Q 001668 487 LLKQLPGIGMVTAKALHS-----MGIKSFETLAEA 516 (1034)
Q Consensus 487 ~LlQLP~I~~~~ak~L~~-----~gi~Sl~~L~~~ 516 (1034)
.|.++|||++..|+++.+ .++.+++||...
T Consensus 15 eL~~lpgi~~~~A~~Iv~~R~~~G~f~s~~dL~~v 49 (65)
T PF12836_consen 15 ELQALPGIGPKQAKAIVEYREKNGPFKSLEDLKEV 49 (65)
T ss_dssp HHHTSTT--HHHHHHHHHHHHHH-S-SSGGGGGGS
T ss_pred HHHHcCCCCHHHHHHHHHHHHhCcCCCCHHHHhhC
Confidence 489999999999988753 468889888874
No 232
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=42.24 E-value=84 Score=37.28 Aligned_cols=76 Identities=24% Similarity=0.237 Sum_probs=48.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
+.++||.||||.-|..+++.+....... ...++..+||.........
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~--------------------------------~~~v~~~~gg~~~~~~~~~- 129 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQAT--------------------------------GLKLGLAYGGDGYDKQLKV- 129 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccC--------------------------------CceEEEEECCCCHHHHHHH-
Confidence 3579999999998888877665442211 1237778888775544332
Q ss_pred HHhhcCCcceEEeccc-----cc-cccCCCCeEEEEec
Q 001668 148 GLFLKGDVQVLCTTNT-----LA-HGINLPAHTVVIKS 179 (1034)
Q Consensus 148 ~~F~~G~ikVLVaT~t-----La-~GVNLPav~vVI~~ 179 (1034)
+ .+...|||+|+- +. ..+++..+.+||-+
T Consensus 130 --l-~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 130 --L-ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred --h-cCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 2 345789999982 11 23567777777754
No 233
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=42.22 E-value=1.3e+02 Score=37.84 Aligned_cols=88 Identities=20% Similarity=0.244 Sum_probs=68.6
Q ss_pred HHHhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCH
Q 001668 61 ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCL 140 (1034)
Q Consensus 61 ~l~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~ 140 (1034)
.+..+..|.|+..-+||-=-|+.-+..+.+.+...| ..|+.+-|.+..
T Consensus 304 ml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~--------------------------------i~V~lLtG~~kg 351 (677)
T COG1200 304 MLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLG--------------------------------IRVALLTGSLKG 351 (677)
T ss_pred HHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC--------------------------------CeEEEeecccch
Confidence 344567788999999987777777776666543322 239999999999
Q ss_pred HHHHHHHHHhhcCCcceEEeccccc-cccCCCCeEEEEecc
Q 001668 141 KDRNLIEGLFLKGDVQVLCTTNTLA-HGINLPAHTVVIKST 180 (1034)
Q Consensus 141 ~dR~~ve~~F~~G~ikVLVaT~tLa-~GVNLPav~vVI~~t 180 (1034)
+.|+.+.+...+|.+.++|-|=.|- -.|++-+.-.||-+-
T Consensus 352 k~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDE 392 (677)
T COG1200 352 KARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDE 392 (677)
T ss_pred hHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEec
Confidence 9999999999999999999997665 468888877766544
No 234
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=42.02 E-value=1.1e+02 Score=30.52 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=41.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHH-HHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLK-DRNLI 146 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~-dR~~v 146 (1034)
...+||.||++.-++..+..+...+... ...+...|++.+.. +....
T Consensus 44 ~~~~lii~P~~~l~~q~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~ 91 (169)
T PF00270_consen 44 DARVLIIVPTRALAEQQFERLRKFFSNT--------------------------------NVRVVLLHGGQSISEDQREV 91 (169)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHHTTTT--------------------------------TSSEEEESTTSCHHHHHHHH
T ss_pred CceEEEEeeccccccccccccccccccc--------------------------------cccccccccccccccccccc
Confidence 4589999999999999988887653221 12266778888754 33333
Q ss_pred HHHhhcCCcceEEeccc
Q 001668 147 EGLFLKGDVQVLCTTNT 163 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~t 163 (1034)
. .+...|+|+|..
T Consensus 92 ~----~~~~~ilv~T~~ 104 (169)
T PF00270_consen 92 L----SNQADILVTTPE 104 (169)
T ss_dssp H----HTTSSEEEEEHH
T ss_pred c----cccccccccCcc
Confidence 3 677889999973
No 235
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=41.59 E-value=26 Score=42.39 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.|--+||-.|||.-|..+...|...+...+++ .|.+-||.. .-
T Consensus 140 DGlGalIISPTRELA~QtFevL~kvgk~h~fS--------------------------------aGLiiGG~~-----~k 182 (758)
T KOG0343|consen 140 DGLGALIISPTRELALQTFEVLNKVGKHHDFS--------------------------------AGLIIGGKD-----VK 182 (758)
T ss_pred CCceeEEecchHHHHHHHHHHHHHHhhccccc--------------------------------cceeecCch-----hH
Confidence 45679999999999988888887654322222 555667754 34
Q ss_pred HHHhhcCCcceEEeccc-----c--ccccCCCCeEEEEec
Q 001668 147 EGLFLKGDVQVLCTTNT-----L--AHGINLPAHTVVIKS 179 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~t-----L--a~GVNLPav~vVI~~ 179 (1034)
+++-|-..++|||||+- + .-+.+-+...+.|.+
T Consensus 183 ~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 183 FELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLD 222 (758)
T ss_pred HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEec
Confidence 45556678899999983 1 223444555555543
No 236
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=41.26 E-value=79 Score=37.93 Aligned_cols=78 Identities=21% Similarity=0.182 Sum_probs=51.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
..++||.||||.-|..++..+....... ....+..++||.+...+....
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~-------------------------------~~~~v~~~~Gg~~~~~~~~~l 120 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFI-------------------------------PNIKVLTLCGGVPMGPQIDSL 120 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhC-------------------------------CCcEEEEEECCCChHHHHHHh
Confidence 3479999999998888887776542110 012377889999876654322
Q ss_pred HHhhcCCcceEEecc-----ccc-cccCCCCeEEEEecc
Q 001668 148 GLFLKGDVQVLCTTN-----TLA-HGINLPAHTVVIKST 180 (1034)
Q Consensus 148 ~~F~~G~ikVLVaT~-----tLa-~GVNLPav~vVI~~t 180 (1034)
+ +...|+|+|+ .+. ..+++..+.+||-+.
T Consensus 121 ---~-~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 121 ---E-HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred ---c-CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 2 5678999995 333 346777877777543
No 237
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=40.06 E-value=23 Score=48.33 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCC
Q 001668 143 RNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPP 209 (1034)
Q Consensus 143 R~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g 209 (1034)
+..++..|....+++|++|+++..|+|+|-..-|+... .|.....|+|..|||-++.
T Consensus 343 ~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~----------~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 343 QAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFD----------APTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheecc----------CcchHHHHHHhhcccccch
Confidence 67889999999999999999999999999888888654 4566788999999997653
No 238
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.91 E-value=69 Score=38.70 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
.++.+||.+|+|.-+...+..|... | ..+.+.+++.+..++..+
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~----g--------------------------------i~~~~l~~~~~~~~~~~i 93 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKAS----G--------------------------------IPATFLNSSQSKEQQKNV 93 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHc----C--------------------------------CcEEEEeCCCCHHHHHHH
Confidence 4567888888887665554444321 1 126778899999999999
Q ss_pred HHHhhcCCcceEEeccc
Q 001668 147 EGLFLKGDVQVLCTTNT 163 (1034)
Q Consensus 147 e~~F~~G~ikVLVaT~t 163 (1034)
....+.|..++|++|+-
T Consensus 94 ~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 94 LTDLKDGKIKLLYVTPE 110 (470)
T ss_pred HHHHhcCCCCEEEECHH
Confidence 99999999999999985
No 239
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=39.82 E-value=38 Score=29.37 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=22.5
Q ss_pred cccc-cCCCCHHHHHHHHhC-----CCCCHHHHhhC
Q 001668 487 LLKQ-LPGIGMVTAKALHSM-----GIKSFETLAEA 516 (1034)
Q Consensus 487 ~LlQ-LP~I~~~~ak~L~~~-----gi~Sl~~L~~~ 516 (1034)
+|.+ +||+|...++++-+. +++++.+|...
T Consensus 17 ~L~~~ipgig~~~a~~Il~~R~~~g~~~s~~dL~~v 52 (69)
T TIGR00426 17 ELQRAMNGVGLKKAEAIVSYREEYGPFKTVEDLKQV 52 (69)
T ss_pred HHHhHCCCCCHHHHHHHHHHHHHcCCcCCHHHHHcC
Confidence 4888 999999999888542 47777777653
No 240
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=39.12 E-value=16 Score=33.87 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=5.4
Q ss_pred hHHHHHhhccCCCC
Q 001668 735 FQHIREKARNFPIS 748 (1034)
Q Consensus 735 ~~~~~~~~~~~~~~ 748 (1034)
|.-.+.-.-+||+.
T Consensus 53 ~~~v~rYltSf~id 66 (101)
T PF09026_consen 53 FTMVKRYLTSFPID 66 (101)
T ss_dssp HHHHHHHHCTS---
T ss_pred cchHhhhhhccchh
Confidence 33344555566653
No 241
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=38.84 E-value=1e+02 Score=37.10 Aligned_cols=74 Identities=19% Similarity=0.312 Sum_probs=49.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHH
Q 001668 70 SALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGL 149 (1034)
Q Consensus 70 ~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~ 149 (1034)
++||.||||.-|..++..+..... .+...+...+||.+.......
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~--------------------------------~~~~~~~~~~gg~~~~~~~~~--- 121 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSK--------------------------------YLNIRSLVVFGGVSINPQMMK--- 121 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhc--------------------------------cCCCEEEEEECCcCHHHHHHH---
Confidence 699999999988888777765421 112236667888876654321
Q ss_pred hhcCCcceEEeccc------cccccCCCCeEEEEec
Q 001668 150 FLKGDVQVLCTTNT------LAHGINLPAHTVVIKS 179 (1034)
Q Consensus 150 F~~G~ikVLVaT~t------La~GVNLPav~vVI~~ 179 (1034)
+ .+...|||||+- ....+++..+.+||-+
T Consensus 122 l-~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViD 156 (456)
T PRK10590 122 L-RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLD 156 (456)
T ss_pred H-cCCCcEEEEChHHHHHHHHcCCcccccceEEEee
Confidence 2 467899999972 2345678888887754
No 242
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=38.58 E-value=81 Score=39.27 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=31.0
Q ss_pred ceEEccCCCCHHHHHHHHHHhhcCCcceEEeccc
Q 001668 130 GVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNT 163 (1034)
Q Consensus 130 GV~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~t 163 (1034)
.++++|++++..++..++.....|.+++|++|+-
T Consensus 79 ~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 79 AAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 3788999999999999999999999999999874
No 243
>cd03468 PolY_like DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.
Probab=37.29 E-value=42 Score=38.30 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=40.6
Q ss_pred ccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 490 QLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 490 QLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
.+||+|....++|.+.|++|+.||++++...+....| ..|..+...+.-.
T Consensus 174 ~~~gig~~~~~~L~~~Gi~t~~dl~~~~~~~l~~rfG---~~~~~l~~~~~G~ 223 (335)
T cd03468 174 AALRLPPETVELLARLGLRTLGDLAALPRAELARRFG---LALLLRLDQAYGR 223 (335)
T ss_pred hHhCCCHHHHHHHHHhCcccHHHHHhCChHHHHhhcC---HHHHHHHHHHCCC
Confidence 5899999999999999999999999999888887765 2455555555543
No 244
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=36.87 E-value=3e+02 Score=25.25 Aligned_cols=71 Identities=8% Similarity=0.087 Sum_probs=38.8
Q ss_pred eecCCeEEEEEEEEEecCCcccCccccceEEEEecCCCeEEEeeee-eeeccCcceEEEEEeeCCC---CceEEEEEEE
Q 001668 555 CQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKI-RVDEFSSPYSVTVLSSNPQ---QGKLTVKADL 629 (1034)
Q Consensus 555 v~~~~~~~l~Vkl~r~~p~~~~~k~~~~wv~V~D~k~n~Il~~~ri-~~~~~~~~~~v~l~f~aP~---~G~~~~~v~l 629 (1034)
..||+.+.+++-++............-..+.|.|++++.+.-. .. ... ..-.+...|+.|. .|.|++.+..
T Consensus 11 YrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~-~~~~~~---~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRW-SVNTTN---ENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEE-EEEETT---CTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEE-EeeeeC---CCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 5689999999888776621111111222488889976665434 33 221 2223444566664 4998887765
No 245
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=36.83 E-value=1.2e+02 Score=39.38 Aligned_cols=143 Identities=17% Similarity=0.072 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLI 146 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~v 146 (1034)
-|.++|||..|-..-..+-.+|... ...|....+-. .....+.++|. +....-+-|......|..+
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v-~r~gk~~~d~~----------~~~~~eGkW~~---GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELV-SREGKEDKDKP----------LIYKGEGKWLR---GKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhh-cccCccccccc----------cccccccceec---CCceEEecCcccHHHHHHH
Confidence 3788999999877665555554322 11121100000 00011111111 1123335588999999999
Q ss_pred HHHhhcC----CcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEE-EEec
Q 001668 147 EGLFLKG----DVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVI-IMTR 221 (1034)
Q Consensus 147 e~~F~~G----~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~ai-il~~ 221 (1034)
.+.|.+- ..-.||+|.+.+.||||-|.+-||-.+--|+|. |+ .|-+=|+-|.|.-+.-.+| +++.
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPS------yD----tQSIFRvyRfGQtKPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPS------YD----TQSIFRVYRFGQTKPVYIYRFIAQ 1276 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCc------cc----hHHHHHHHhhcCcCceeehhhhhc
Confidence 9999853 234689999999999997655444333334432 33 4556677787744455555 3333
Q ss_pred c-ccHHHHHHHhc
Q 001668 222 R-ETVHLYENLLN 233 (1034)
Q Consensus 222 ~-~~~~~y~~ll~ 233 (1034)
. .+...|++-+.
T Consensus 1277 GTmEeKIYkRQVT 1289 (1567)
T KOG1015|consen 1277 GTMEEKIYKRQVT 1289 (1567)
T ss_pred ccHHHHHHHHHHh
Confidence 2 33455665443
No 246
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=36.74 E-value=95 Score=37.49 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=47.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHH
Q 001668 69 KSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEG 148 (1034)
Q Consensus 69 ~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~ 148 (1034)
.++||.++||.-+...++.+.... ..+...+..+|||.+..... +
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~--------------------------------~~~~~~v~~~~gg~~~~~~~---~ 207 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALT--------------------------------KYTGLNVMTFVGGMDFDKQL---K 207 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhh--------------------------------ccCCCEEEEEEccCChHHHH---H
Confidence 467888888877777666654431 11233477788887654432 3
Q ss_pred HhhcCCcceEEeccc------cccccCCCCeEEEEec
Q 001668 149 LFLKGDVQVLCTTNT------LAHGINLPAHTVVIKS 179 (1034)
Q Consensus 149 ~F~~G~ikVLVaT~t------La~GVNLPav~vVI~~ 179 (1034)
.+..+..+|||+|+- -.|.+.+..+.+||-+
T Consensus 208 ~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 208 QLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred HHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 445677899999983 2345666666666643
No 247
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=36.49 E-value=51 Score=41.49 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=43.1
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
|..+||||+.++++|.++ +.|++++..++.+++..+-|..+...+.|.+.++++
T Consensus 639 L~~IPGIGpkr~k~LL~~-FGSle~I~~AS~eELa~V~Gig~k~Ae~I~~~L~~~ 692 (694)
T PRK14666 639 LQRVEGIGPATARLLWER-FGSLQAMAAAGEEGLAAVPGIGPARAAALHEHLKTL 692 (694)
T ss_pred HhhCCCCCHHHHHHHHHH-hCCHHHHHhcCHHHHHhcCCcCHHHHHHHHHHHHHh
Confidence 889999999999998763 559999999999999888665555566666666543
No 248
>PRK14973 DNA topoisomerase I; Provisional
Probab=35.88 E-value=44 Score=43.87 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=38.3
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCc
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYP 530 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~ 530 (1034)
|+-++|+|++++.+|+.+|+.++++|..+|.+++..-.|...+
T Consensus 879 l~~vkg~ge~t~~~l~~ag~~~~e~l~~~d~~~la~~~~i~~k 921 (936)
T PRK14973 879 LLSVPGLGETTLEKLYLAGVYDGDLLVSADPKKLAKVTGIDEK 921 (936)
T ss_pred hhhccCCCHHHHHHHHHcCCCCHHHhccCCHHHHhhhcCCCHH
Confidence 8999999999999999999999999999999998877664433
No 249
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.66 E-value=1.2e+02 Score=37.08 Aligned_cols=122 Identities=21% Similarity=0.213 Sum_probs=73.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
+..+||-+|||.-|..+.+......... ..-..+.+||.+...+..-.
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~--------------------------------~~~~~cvyGG~~~~~Q~~~l 212 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSL--------------------------------RLRSTCVYGGAPKGPQLRDL 212 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCC--------------------------------CccEEEEeCCCCccHHHHHH
Confidence 4569999999998888877766542111 11156778888766543322
Q ss_pred HHhhcCCcceEEecc-----ccccc-cCCCCeEEEEecc--ccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEE
Q 001668 148 GLFLKGDVQVLCTTN-----TLAHG-INLPAHTVVIKST--QYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIM 219 (1034)
Q Consensus 148 ~~F~~G~ikVLVaT~-----tLa~G-VNLPav~vVI~~t--~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil 219 (1034)
+.-+.|+|+|+ .+..| +|+-.++++|.+- +..+ +++.-.+..+++.++|.-| .-..+..
T Consensus 213 ----~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMld----mGFe~qI~~Il~~i~~~~r-----Qtlm~sa 279 (519)
T KOG0331|consen 213 ----ERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLD----MGFEPQIRKILSQIPRPDR-----QTLMFSA 279 (519)
T ss_pred ----hcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhc----cccHHHHHHHHHhcCCCcc-----cEEEEee
Confidence 23468999997 56666 6888999988752 1122 1234456677777776654 2233333
Q ss_pred ecccc-HHHHHHHhcC
Q 001668 220 TRRET-VHLYENLLNG 234 (1034)
Q Consensus 220 ~~~~~-~~~y~~ll~~ 234 (1034)
|-+.. ..+-..+++.
T Consensus 280 Twp~~v~~lA~~fl~~ 295 (519)
T KOG0331|consen 280 TWPKEVRQLAEDFLNN 295 (519)
T ss_pred eccHHHHHHHHHHhcC
Confidence 33333 3444566663
No 250
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=34.42 E-value=36 Score=42.39 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=10.4
Q ss_pred CCCcEEEEcCCHHHHHHH
Q 001668 67 RGKSALVFCSTRKGAQEA 84 (1034)
Q Consensus 67 ~~~~~LVFv~sRk~~e~l 84 (1034)
.|+.+=||..-.-.-+.+
T Consensus 93 ~gk~vGvf~ke~~~G~F~ 110 (960)
T KOG1189|consen 93 AGKKVGVFAKEKFQGEFM 110 (960)
T ss_pred cCCeeeeecccccchhHH
Confidence 567777777654443333
No 251
>TIGR03491 RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.
Probab=33.11 E-value=46 Score=40.16 Aligned_cols=36 Identities=42% Similarity=0.695 Sum_probs=31.6
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHH
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEI 523 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~ 523 (1034)
|..||||+...+..|.++||.|+++|+++++..+..
T Consensus 209 lslv~gi~~~~~~~L~~~GI~ti~~La~~~~~~l~~ 244 (457)
T TIGR03491 209 LSLVPGIGPSRYRLLQELGIHTLEDLAAADPNDLED 244 (457)
T ss_pred eeecCCCCHHHHHHHHHcCCCcHHHHhcCCcccccc
Confidence 778999999999999999999999999988654443
No 252
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=33.07 E-value=1.6e+02 Score=35.74 Aligned_cols=75 Identities=23% Similarity=0.241 Sum_probs=55.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHH
Q 001668 69 KSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEG 148 (1034)
Q Consensus 69 ~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~ 148 (1034)
-++||.||||.-+..++....+. ..+...-|+..-|||+-..++.+++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~ql--------------------------------aqFt~I~~~L~vGGL~lk~QE~~LR 300 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQL--------------------------------AQFTDITVGLAVGGLDLKAQEAVLR 300 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHH--------------------------------HhhccceeeeeecCccHHHHHHHHh
Confidence 46999999999887777665443 2222333777889999988877765
Q ss_pred HhhcCCcceEEeccc-------cccccCCCCeEEEEec
Q 001668 149 LFLKGDVQVLCTTNT-------LAHGINLPAHTVVIKS 179 (1034)
Q Consensus 149 ~F~~G~ikVLVaT~t-------La~GVNLPav~vVI~~ 179 (1034)
. .-.|+|||+- =+.+.|+..+.|.|.+
T Consensus 301 s----~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 301 S----RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred h----CCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 3 4579999983 3568899999999976
No 253
>PTZ00110 helicase; Provisional
Probab=32.92 E-value=1.2e+02 Score=37.44 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=47.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHH
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve 147 (1034)
+..+||.||||.-|..+...+...... ....+...+||.+......
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~--------------------------------~~i~~~~~~gg~~~~~q~~-- 248 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGAS--------------------------------SKIRNTVAYGGVPKRGQIY-- 248 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcc--------------------------------cCccEEEEeCCCCHHHHHH--
Confidence 445899999998887776666543211 1122566778877654432
Q ss_pred HHhhcCCcceEEecc-----ccccc-cCCCCeEEEEec
Q 001668 148 GLFLKGDVQVLCTTN-----TLAHG-INLPAHTVVIKS 179 (1034)
Q Consensus 148 ~~F~~G~ikVLVaT~-----tLa~G-VNLPav~vVI~~ 179 (1034)
.++. ...|||+|+ .+..+ +++..+.+||-+
T Consensus 249 -~l~~-~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViD 284 (545)
T PTZ00110 249 -ALRR-GVEILIACPGRLIDFLESNVTNLRRVTYLVLD 284 (545)
T ss_pred -HHHc-CCCEEEECHHHHHHHHHcCCCChhhCcEEEee
Confidence 2333 368999997 34444 677777777754
No 254
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=32.31 E-value=27 Score=45.05 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 001668 415 KIFVLAND 422 (1034)
Q Consensus 415 Ka~vLLqA 422 (1034)
.++.++++
T Consensus 415 ~i~~~~~~ 422 (784)
T PF04931_consen 415 DIFLFFHA 422 (784)
T ss_pred HHHHHHHH
Confidence 34444443
No 255
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=31.92 E-value=77 Score=40.11 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=39.0
Q ss_pred ccccCCCCHHHHHHHHhC-CCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHh
Q 001668 488 LKQLPGIGMVTAKALHSM-GIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLL 540 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~-gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~ 540 (1034)
-+.+||+|+.++++|++. +|+++.||..+..+++..|-|..++-..++.+.+.
T Consensus 447 al~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~ll~~Ie 500 (665)
T PRK07956 447 AMDIDGLGEKIIEQLFEKGLIHDPADLFKLTAEDLLGLEGFGEKSAQNLLDAIE 500 (665)
T ss_pred ccCCCCcCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcCcCcchHHHHHHHHHHH
Confidence 578999999999999975 57999999999888877775533333334444444
No 256
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.80 E-value=44 Score=42.35 Aligned_cols=13 Identities=23% Similarity=0.031 Sum_probs=5.4
Q ss_pred ccccccchhhhHH
Q 001668 725 DCRVITEKKVFQH 737 (1034)
Q Consensus 725 ~~~~~~~~~~~~~ 737 (1034)
|...+.-.+.|+.
T Consensus 1461 d~~d~~~D~df~~ 1473 (1516)
T KOG1832|consen 1461 DEADILIDGDFME 1473 (1516)
T ss_pred ccccCCCChHHHH
Confidence 3333333344554
No 257
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=31.61 E-value=58 Score=31.77 Aligned_cols=30 Identities=40% Similarity=0.593 Sum_probs=22.5
Q ss_pred cccccCCCCHHHHHHHHhC-----CCCCHHHHhhC
Q 001668 487 LLKQLPGIGMVTAKALHSM-----GIKSFETLAEA 516 (1034)
Q Consensus 487 ~LlQLP~I~~~~ak~L~~~-----gi~Sl~~L~~~ 516 (1034)
.|.+|||||+..++++.+. .+.++++|...
T Consensus 69 eL~~lpGIG~~~A~~Ii~~R~~~g~f~s~eeL~~V 103 (120)
T TIGR01259 69 ELQALPGIGPAKAKAIIEYREENGAFKSVDDLTKV 103 (120)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCcCCHHHHHcC
Confidence 4889999999999888532 46677777553
No 258
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=30.93 E-value=84 Score=39.72 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=33.6
Q ss_pred ccccCCCCHHHHHHHHhCC-CCCHHHHhhCChHHHHHhhC
Q 001668 488 LKQLPGIGMVTAKALHSMG-IKSFETLAEADPRRIEIVTG 526 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~g-i~Sl~~L~~~~~~~le~Ll~ 526 (1034)
-+.+||+|+.++++|+++| |+++.||..+..+++..|-|
T Consensus 434 al~I~GLG~k~i~~L~~~g~I~~~~Dl~~L~~~~L~~L~G 473 (652)
T TIGR00575 434 AMDIEGLGDKVIEQLFEKKLVRSVADLYALKKEDLLELEG 473 (652)
T ss_pred ccCCCCcCHHHHHHHHHcCCcCCHHHHHhcCHHHHhhccC
Confidence 5789999999999999765 79999999998888777755
No 259
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=30.86 E-value=3e+02 Score=34.75 Aligned_cols=56 Identities=25% Similarity=0.275 Sum_probs=45.4
Q ss_pred eEEccCCCCHHHHHHHHHHhh--cCCcceE-EeccccccccCCCCeEEEEeccccccCC
Q 001668 131 VGYHNGGLCLKDRNLIEGLFL--KGDVQVL-CTTNTLAHGINLPAHTVVIKSTQYFNKE 186 (1034)
Q Consensus 131 V~~hH~gLs~~dR~~ve~~F~--~G~ikVL-VaT~tLa~GVNLPav~vVI~~t~~y~~~ 186 (1034)
...+||....++|..+.+.|. +|..+|+ ++=..-+-|+||-.-+++|.-+.+|+|.
T Consensus 773 y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPa 831 (901)
T KOG4439|consen 773 YTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPA 831 (901)
T ss_pred eeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHH
Confidence 556899999999999999996 5656665 5556667889998888888888888864
No 260
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=29.86 E-value=57 Score=37.08 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCCcccccccCCCCHHHHHHHHh-CCCCCHHHHhhCC
Q 001668 473 AKSLYQRLWDDSPYLLKQLPGIGMVTAKALHS-MGIKSFETLAEAD 517 (1034)
Q Consensus 473 ~q~L~QalW~~~~~~LlQLP~I~~~~ak~L~~-~gi~Sl~~L~~~~ 517 (1034)
...+.-.++.+.-+ |+++||+|++.+.+|++ .||+++.+|..+.
T Consensus 81 le~lk~~~P~gl~~-Ll~v~GlGpkKi~~Ly~elgi~~~e~l~~a~ 125 (326)
T COG1796 81 LEALKKEVPEGLEP-LLKVPGLGPKKIVSLYKELGIKDLEELQEAL 125 (326)
T ss_pred HHHHHHhCCcchHH-HhhCCCCCcHHHHHHHHHHCcccHHHHHHHH
Confidence 33444455667666 99999999988888875 6899999998854
No 261
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=29.35 E-value=60 Score=38.88 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=5.8
Q ss_pred cccccccCcCCCCC
Q 001668 651 SNVNRKCGHKQSPL 664 (1034)
Q Consensus 651 ~~~~~~~~~~~p~~ 664 (1034)
.+.++.+++.-|+.
T Consensus 78 ~~~nv~rd~m~~~~ 91 (641)
T KOG0772|consen 78 RNPNVSRDVMGPPR 91 (641)
T ss_pred ccccccccccCCCC
Confidence 33334555433433
No 262
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.32 E-value=34 Score=42.75 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=8.8
Q ss_pred hHHHHHhhccCCCCCCCcc
Q 001668 735 FQHIREKARNFPISTASNN 753 (1034)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~ 753 (1034)
++|=++|-+.-.-+..+++
T Consensus 950 ~s~kkkk~k~~~d~pvFAs 968 (988)
T KOG2038|consen 950 RSKKKKKEKGLNDSPVFAS 968 (988)
T ss_pred cccchhhhhccccchhhhh
Confidence 4555555554444333333
No 263
>PTZ00205 DNA polymerase kappa; Provisional
Probab=29.06 E-value=76 Score=39.13 Aligned_cols=32 Identities=28% Similarity=0.593 Sum_probs=30.4
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChH
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPR 519 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~ 519 (1034)
+..|||||....++|.+.||.|+.||...++.
T Consensus 311 V~ki~GIG~~t~~~L~~~GI~TigDLa~~~~~ 342 (571)
T PTZ00205 311 LRSVPGVGKVTEALLKGLGITTLSDIYNRRVE 342 (571)
T ss_pred cceeCCcCHHHHHHHHHcCCCcHHHHhcCCHH
Confidence 89999999999999999999999999998865
No 264
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=28.85 E-value=89 Score=39.70 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCCCcccccccCCCCHHHHHHHHhCC-CCCHHHHhhCChHHHHHhhCCCCchhHHHHHHH
Q 001668 481 WDDSPYLLKQLPGIGMVTAKALHSMG-IKSFETLAEADPRRIEIVTGRKYPFGNHIKESL 539 (1034)
Q Consensus 481 W~~~~~~LlQLP~I~~~~ak~L~~~g-i~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~ 539 (1034)
|..+-. .+.++|+|+.++++|.++| ++++.||..+..+++..|-|..++-..++.+.+
T Consensus 458 hf~sr~-al~I~GLG~k~i~~L~~~g~V~~~~Dl~~L~~~~L~~l~g~g~Ksa~~Ll~~I 516 (689)
T PRK14351 458 HYASRD-ALDIEGLGEERVQQLVDAGLVESLADLYDLTVADLAELEGWGETSAENLLAEL 516 (689)
T ss_pred HHhccc-ccCCCCcCHHHHHHHHHcCCCCCHHHHHHcCHHHHhcCcCcchhHHHHHHHHH
Confidence 443333 6889999999999999876 689999999998777666543333333343333
No 265
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=28.43 E-value=1.1e+02 Score=38.42 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=40.3
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHH
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESL 539 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~ 539 (1034)
|..+||||+.+.++|-+ .+.|++++..++.+++..+.|.......+|...+
T Consensus 610 L~~IpGiG~kr~~~LL~-~FgS~~~i~~As~eel~~v~gi~~~~A~~i~~~~ 660 (691)
T PRK14672 610 FERLPHVGKVRAHRLLA-HFGSFRSLQSATPQDIATAIHIPLTQAHTILHAA 660 (691)
T ss_pred cccCCCCCHHHHHHHHH-HhcCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHh
Confidence 88999999999998875 3669999999999999998775554555554443
No 266
>COG0389 DinP Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.48 E-value=99 Score=35.99 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=44.4
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+..++|||...+++|...||.|+.++...+...+...+| ..|..+...++-+.
T Consensus 178 v~~~~GvG~~~~~~l~~~Gi~ti~dl~~~~~~~L~~~~g---~~~~~l~~~a~Gid 230 (354)
T COG0389 178 VLEFWGVGKVTAEKLRRLGISTIGDLAETDLDALKKRFG---KLGERLYRLARGID 230 (354)
T ss_pred hhhhCCCCHHHHHHHHHcCChhHHHHHhcCHHHHHHHHh---HhHHHHHHHhcCCC
Confidence 789999999999999999999999999988888877765 35566666666665
No 267
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=26.58 E-value=2e+02 Score=38.43 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=99.6
Q ss_pred HhhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHH
Q 001668 63 MQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKD 142 (1034)
Q Consensus 63 ~~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~d 142 (1034)
.....|+||.|.|||---|++-.+.+.+.+...+. .|+.+..=-+.++
T Consensus 638 kAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV--------------------------------~I~~LSRF~s~kE 685 (1139)
T COG1197 638 KAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPV--------------------------------RIEVLSRFRSAKE 685 (1139)
T ss_pred HHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCe--------------------------------eEEEecccCCHHH
Confidence 45678999999999988888878777776543221 1555666677899
Q ss_pred HHHHHHHhhcCCcceEEecc-ccccccCCCCeE-EEEeccccccCCCC---------------ccccCCHHHHHHhcccc
Q 001668 143 RNLIEGLFLKGDVQVLCTTN-TLAHGINLPAHT-VVIKSTQYFNKEKG---------------LYMEHDRSTILQMCGRA 205 (1034)
Q Consensus 143 R~~ve~~F~~G~ikVLVaT~-tLa~GVNLPav~-vVI~~t~~y~~~~~---------------~~~p~s~~~ylQmiGRA 205 (1034)
...+.+..++|++.|||-|= .|.-+|-+.+.- +||.--++|+-... .-.|++..=++-|.|-
T Consensus 686 ~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~Gi- 764 (1139)
T COG1197 686 QKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGI- 764 (1139)
T ss_pred HHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcc-
Confidence 99999999999999999996 556667666655 45555556653210 0134444434444441
Q ss_pred CCCCCCCccEEEEEeccccHHHHHHHhcCcccccchhhhhhhhhhHHHHHhc--------ccCCHHHHHHHHHHh
Q 001668 206 GRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQM--------TVSDITQAIEWMKCS 272 (1034)
Q Consensus 206 GR~g~d~~G~aiil~~~~~~~~y~~ll~~~~pieS~L~~~L~d~l~aEI~~g--------~i~~~~~aidwl~~T 272 (1034)
...++|-|.+.+.--.+.++..-. ...+++.+..|+..| .|.++.++-..|+.-
T Consensus 765 -------RdlSvI~TPP~~R~pV~T~V~~~d------~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~L 826 (1139)
T COG1197 765 -------RDLSVIATPPEDRLPVKTFVSEYD------DLLIREAILRELLRGGQVFYVHNRVESIEKKAERLREL 826 (1139)
T ss_pred -------hhhhhccCCCCCCcceEEEEecCC------hHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHh
Confidence 234455555444322222222111 125677888888766 345555555555443
No 268
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=26.23 E-value=53 Score=22.86 Aligned_cols=17 Identities=41% Similarity=0.641 Sum_probs=15.1
Q ss_pred ccccCCCCHHHHHHHHh
Q 001668 488 LKQLPGIGMVTAKALHS 504 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~ 504 (1034)
|.++||||+..++++.+
T Consensus 3 L~~i~GiG~k~A~~il~ 19 (26)
T smart00278 3 LLKVPGIGPKTAEKILE 19 (26)
T ss_pred hhhCCCCCHHHHHHHHH
Confidence 78999999999998865
No 269
>PHA02664 hypothetical protein; Provisional
Probab=26.10 E-value=75 Score=35.61 Aligned_cols=21 Identities=19% Similarity=0.550 Sum_probs=11.0
Q ss_pred HHHHhhhHhhhhc-CCCccccc
Q 001668 268 WMKCSYLYVRMKK-NPQNYSVR 288 (1034)
Q Consensus 268 wl~~Tfly~rl~~-nP~~Y~l~ 288 (1034)
||..-|--+.+.. -|-.|.++
T Consensus 161 wlaavfatrhfeplpppmyavp 182 (534)
T PHA02664 161 WLAAVFATRHFEPLPPPMYAVP 182 (534)
T ss_pred eeeeeehhccccCCCCCccccC
Confidence 6666655544332 34456654
No 270
>cd01702 PolY_Pol_eta DNA Polymerase eta. Pol eta, also called Rad30A, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Unlike other Y-family members, Pol eta can efficiently and accurately replicate DNA past UV-induced lesions. Its activity is initiated by two simultaneous interactions: the PIP box in pol eta interacting with PCNA, and the UBZ (ubiquitin-binding zinc finger) in pol eta interacting with monoubiquitin attached to PCNA. Pol eta is more efficient in copying damaged DNA than undamaged DNA and seems to recognize when a lesion has been passed, facilitating a lesion-dependent dissociation from the DNA.
Probab=25.65 E-value=86 Score=36.58 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=42.6
Q ss_pred ccccCCCCHHHHHH-HHhCCCCCHHHHhhC--ChHHHHHhhCCCCchhHHHHHHHhcCC
Q 001668 488 LKQLPGIGMVTAKA-LHSMGIKSFETLAEA--DPRRIEIVTGRKYPFGNHIKESLLSLP 543 (1034)
Q Consensus 488 LlQLP~I~~~~ak~-L~~~gi~Sl~~L~~~--~~~~le~Ll~~~~~~g~~I~~~~~~lP 543 (1034)
+..|||||....++ |.+.||+|+.||+.+ +...+....| ...|..+.+.+.-..
T Consensus 184 v~~l~GiG~~~~~~ll~~~Gi~ti~dl~~~~~~~~~L~~~fG--~~~g~~l~~~a~G~d 240 (359)
T cd01702 184 ITSIRGLGGKLGEEIIDLLGLPTEGDVAGFRSSESDLQEHFG--EKLGEWLYNLLRGID 240 (359)
T ss_pred HHHhCCcCHHHHHHHHHHcCCcCHHHHHhccCCHHHHHHHHH--HHHHHHHHHHhCCCC
Confidence 78899999988766 578999999999999 9888877654 135667777777654
No 271
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional
Probab=25.21 E-value=74 Score=34.52 Aligned_cols=38 Identities=26% Similarity=0.499 Sum_probs=34.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhh
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVT 525 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll 525 (1034)
|.++.|||+...+.|...|+.++.+++..+++++..+-
T Consensus 160 L~~I~GIGp~~a~~L~eaGi~tfaQIAa~t~a~ia~id 197 (221)
T PRK12278 160 LTKITGVGPALAKKLNEAGVTTFAQIAALTDADIAKID 197 (221)
T ss_pred heeccccChHHHHHHHHcCCCCHHHhhCCChhhhhhhh
Confidence 89999999999999999999999999999988776554
No 272
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=24.83 E-value=2.3e+02 Score=35.91 Aligned_cols=74 Identities=12% Similarity=0.029 Sum_probs=52.2
Q ss_pred hhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHH
Q 001668 64 QYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143 (1034)
Q Consensus 64 ~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR 143 (1034)
....+.+++|.++|+.-|.+.+..+...... ++..|+...||+++++|
T Consensus 140 ~al~G~~v~VvTptreLA~qdae~~~~l~~~--------------------------------lGlsv~~i~gg~~~~~r 187 (656)
T PRK12898 140 AALAGLPVHVITVNDYLAERDAELMRPLYEA--------------------------------LGLTVGCVVEDQSPDER 187 (656)
T ss_pred HhhcCCeEEEEcCcHHHHHHHHHHHHHHHhh--------------------------------cCCEEEEEeCCCCHHHH
Confidence 3456889999999999888888887655322 23348888999998877
Q ss_pred HHHHHHhhcCCcceEEeccccccccCCCCeEEE
Q 001668 144 NLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVV 176 (1034)
Q Consensus 144 ~~ve~~F~~G~ikVLVaT~tLa~GVNLPav~vV 176 (1034)
+... ...|+++|+. +-|.|.--..++
T Consensus 188 ~~~y------~~dIvygT~~-e~~FDyLrd~~~ 213 (656)
T PRK12898 188 RAAY------GADITYCTNK-ELVFDYLRDRLA 213 (656)
T ss_pred HHHc------CCCEEEECCC-chhhhhcccccc
Confidence 7643 3588999885 556665433333
No 273
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=23.98 E-value=43 Score=39.48 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=18.1
Q ss_pred cCCCCCCCccccCCCCccccccchhhhccc
Q 001668 744 NFPISTASNNAHSASSEPLILTRKRFYEQR 773 (1034)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1034)
+|-+.++...+...+++.+-+.|...+...
T Consensus 121 d~~~WtP~~~t~~~~~~~~~~~r~~~~~~~ 150 (458)
T PF10446_consen 121 DYEFWTPGATTAATSSSHLDVRRRSSHRRS 150 (458)
T ss_pred cceeecccccccccccccccccccccccCC
Confidence 566677776665666666555555554444
No 274
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=22.76 E-value=92 Score=39.75 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=46.2
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
+--|||||-....+|++.++++.+||.....++++...| ++.|..+...|+-+
T Consensus 551 v~~LPGVG~sm~~kL~s~~i~tCgdLq~~T~~kl~k~~G--~Klgq~i~~~CrG~ 603 (1016)
T KOG2093|consen 551 VDDLPGVGSSMKSKLVSQFIQTCGDLQLITLIKLRKVFG--PKLGQKIYRGCRGI 603 (1016)
T ss_pred cccCCCccHHHHHHHHHhccchhHHHHHHHHHHHHhhhc--ccHHHHHHHhcCCC
Confidence 667999999999999999999999999988888887766 56788888888865
No 275
>PRK13766 Hef nuclease; Provisional
Probab=21.52 E-value=2.3e+02 Score=36.59 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=50.7
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHH
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNL 145 (1034)
Q Consensus 66 ~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ 145 (1034)
..++++||.|||+.-+...+..+....... ...+..++|+.+..+|..
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~--------------------------------~~~v~~~~g~~~~~~r~~ 103 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIP--------------------------------EEKIVVFTGEVSPEKRAE 103 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC--------------------------------CceEEEEeCCCCHHHHHH
Confidence 457899999999998888887776542100 112677899999988865
Q ss_pred HHHHhhcCCcceEEecccc------ccccCCCCeEEEEec
Q 001668 146 IEGLFLKGDVQVLCTTNTL------AHGINLPAHTVVIKS 179 (1034)
Q Consensus 146 ve~~F~~G~ikVLVaT~tL------a~GVNLPav~vVI~~ 179 (1034)
+. .+ .+|+|+|+-. ..-+++..+.+||-+
T Consensus 104 ~~---~~--~~iiv~T~~~l~~~l~~~~~~~~~~~liVvD 138 (773)
T PRK13766 104 LW---EK--AKVIVATPQVIENDLIAGRISLEDVSLLIFD 138 (773)
T ss_pred HH---hC--CCEEEECHHHHHHHHHcCCCChhhCcEEEEE
Confidence 44 33 4799999742 223455566666644
No 276
>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair]
Probab=21.49 E-value=1.2e+02 Score=33.59 Aligned_cols=54 Identities=26% Similarity=0.255 Sum_probs=42.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcC
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSL 542 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~l 542 (1034)
|.-+||||...++.|-. .+.|+++++.+..+++..+.|..+.-+..|..++...
T Consensus 184 l~s~pgig~~~a~~ll~-~fgS~~~~~tas~~eL~~v~gig~k~A~~I~~~~~t~ 237 (254)
T COG1948 184 LESIPGIGPKLAERLLK-KFGSVEDVLTASEEELMKVKGIGEKKAREIYRFLRTE 237 (254)
T ss_pred HHcCCCccHHHHHHHHH-HhcCHHHHhhcCHHHHHHhcCccHHHHHHHHHHHhch
Confidence 67799999999998864 3669999999999999998885555566666666653
No 277
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=21.41 E-value=2.1e+02 Score=35.80 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=29.2
Q ss_pred eEEccCCCCHHHHHHHHHHhhcCCcceEEeccc
Q 001668 131 VGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNT 163 (1034)
Q Consensus 131 V~~hH~gLs~~dR~~ve~~F~~G~ikVLVaT~t 163 (1034)
+++.+++.+..++..+....+.|.++++++|+.
T Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe 124 (607)
T PRK11057 92 AACLNSTQTREQQLEVMAGCRTGQIKLLYIAPE 124 (607)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChH
Confidence 677889999999999999999999999999864
No 278
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=21.20 E-value=97 Score=32.79 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=17.8
Q ss_pred ccccCCCCHHHHHHHHh-CCCCCH-HHHhhCChHHHHHhhC
Q 001668 488 LKQLPGIGMVTAKALHS-MGIKSF-ETLAEADPRRIEIVTG 526 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~-~gi~Sl-~~L~~~~~~~le~Ll~ 526 (1034)
|..+||||+.+|+++.+ .|...+ +.+.+.+++++..+.|
T Consensus 75 L~~i~GIGpk~A~~il~~fg~~~l~~~i~~~d~~~L~~v~G 115 (192)
T PRK00116 75 LISVSGVGPKLALAILSGLSPEELVQAIANGDVKALTKVPG 115 (192)
T ss_pred HhcCCCCCHHHHHHHHHhCCHHHHHHHHHhCCHHHHHhCCC
Confidence 45566666665555432 232222 2233445555554444
No 279
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=21.05 E-value=1.1e+02 Score=31.24 Aligned_cols=30 Identities=40% Similarity=0.529 Sum_probs=24.5
Q ss_pred cccccCCCCHHHHHHHH----hC-CCCCHHHHhhC
Q 001668 487 LLKQLPGIGMVTAKALH----SM-GIKSFETLAEA 516 (1034)
Q Consensus 487 ~LlQLP~I~~~~ak~L~----~~-gi~Sl~~L~~~ 516 (1034)
+|.+|||||+..|+++. ++ .+++++||.+.
T Consensus 98 eL~~lpgIG~~kA~aIi~yRe~~G~f~sv~dL~~v 132 (149)
T COG1555 98 ELQALPGIGPKKAQAIIDYREENGPFKSVDDLAKV 132 (149)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHcCCCCcHHHHHhc
Confidence 48999999999998885 34 48899999874
No 280
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=20.70 E-value=2.6e+02 Score=35.76 Aligned_cols=36 Identities=31% Similarity=0.268 Sum_probs=30.2
Q ss_pred ceEEccCCCCHHHHHHHHHHhhcC--CcceEEeccccccc
Q 001668 130 GVGYHNGGLCLKDRNLIEGLFLKG--DVQVLCTTNTLAHG 167 (1034)
Q Consensus 130 GV~~hH~gLs~~dR~~ve~~F~~G--~ikVLVaT~tLa~G 167 (1034)
-|..|||. +.+|+.+-..+..+ .+.||++|--++.|
T Consensus 475 ~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 475 KVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred EEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 48899998 48898888888866 89999999888765
No 281
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=20.59 E-value=79 Score=33.50 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHH--HHHHHhhcCCCCcccccccCCCCHHHHHHHH
Q 001668 465 GAVNSALL--AKSLYQRLWDDSPYLLKQLPGIGMVTAKALH 503 (1034)
Q Consensus 465 ~~l~~l~L--~q~L~QalW~~~~~~LlQLP~I~~~~ak~L~ 503 (1034)
.++.++.. ..-+.+++-.+....|.++||||.+.++++.
T Consensus 84 ~Al~iL~~~~~~el~~aI~~~d~~~L~~ipGiGkKtAerIi 124 (191)
T TIGR00084 84 LALAILSNMSPEEFVYAIETEEVKALVKIPGVGKKTAERLL 124 (191)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCHHHHHhCCCCCHHHHHHHH
Confidence 34444432 2355666665444447788888888887764
No 282
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=20.25 E-value=3.2e+02 Score=35.75 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=46.4
Q ss_pred hhcCCCcEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcHHHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHH
Q 001668 64 QYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDR 143 (1034)
Q Consensus 64 ~~~~~~~~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR 143 (1034)
....++.++|-++|+--|.+.+..+.... ++++..|+..+||++..+|
T Consensus 119 ~al~G~~V~VvTpn~yLA~qd~e~m~~l~--------------------------------~~lGLtv~~i~gg~~~~~r 166 (896)
T PRK13104 119 NAISGRGVHIVTVNDYLAKRDSQWMKPIY--------------------------------EFLGLTVGVIYPDMSHKEK 166 (896)
T ss_pred HHhcCCCEEEEcCCHHHHHHHHHHHHHHh--------------------------------cccCceEEEEeCCCCHHHH
Confidence 33457789999999988888887776542 2334458889999999988
Q ss_pred HHHHHHhhcCCcceEEeccc
Q 001668 144 NLIEGLFLKGDVQVLCTTNT 163 (1034)
Q Consensus 144 ~~ve~~F~~G~ikVLVaT~t 163 (1034)
.... ...|+++|+-
T Consensus 167 ~~~y------~~dIvygT~g 180 (896)
T PRK13104 167 QEAY------KADIVYGTNN 180 (896)
T ss_pred HHHh------CCCEEEECCh
Confidence 6654 3689999985
No 283
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=20.24 E-value=1.2e+02 Score=38.03 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=39.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHh
Q 001668 488 LKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLL 540 (1034)
Q Consensus 488 LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~ 540 (1034)
|..+||||+.++++|-+ ...|++.+..++.+++..+++ ....+.|.+.++
T Consensus 554 L~~IpGIG~kr~~~LL~-~FgSi~~I~~As~eeL~~vi~--~k~A~~I~~~l~ 603 (624)
T PRK14669 554 LLEIPGVGAKTVQRLLK-HFGSLERVRAATETQLAAVVG--RAAAEAIIAHFT 603 (624)
T ss_pred HhcCCCCCHHHHHHHHH-HcCCHHHHHhCCHHHHHHHhC--HHHHHHHHHHhc
Confidence 88999999999999875 366999999999999988743 334455555554
Done!