Query 001668
Match_columns 1034
No_of_seqs 378 out of 3220
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 16:12:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001668.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_966-970//hhsearch_pdb/001668hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 1.0 1 1 894.2 59.5 647 9-685 238-914 (1724)
2 4f92_B U5 small nuclear ribonu 1.0 1 1 867.3 53.5 619 7-646 1075-1724(1724)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 527.7 33.3 488 13-551 170-692 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 518.9 38.8 495 15-543 169-703 (720)
5 2va8_A SSO2462, SKI2-type heli 1.0 1 1 509.3 36.5 488 15-546 175-714 (715)
6 3im1_A Protein SNU246, PRE-mRN 1.0 1 1 439.6 35.6 309 323-647 6-327 (328)
7 2q0z_X Protein Pro2281; SEC63, 1.0 1 1 436.8 33.6 306 325-647 12-329 (339)
8 3l9o_A ATP-dependent RNA helic 1.0 1 1 230.9 19.0 256 12-274 318-645 (1108)
9 2xgj_A ATP-dependent RNA helic 1.0 1 1 229.7 18.1 247 13-274 221-547 (1010)
10 2xau_A PRE-mRNA-splicing facto 1.0 1 1 220.1 12.2 297 14-380 239-561 (773)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=894.23 Aligned_cols=647 Identities=24% Similarity=0.371 Sum_probs=571.7
Q ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHCCC-CCCEEECCCCCEECCHHHHH-------------------HHHHHHHCCC
Q ss_conf 412899984999946855999999992999-77377414552011328999-------------------9999964699
Q 001668 9 KSSSLASVRFLAVSATIPNIEDIAEWLNVP-VQGIKRFGEEMRPVKLTTKV-------------------FDILMQYSRG 68 (1034)
Q Consensus 9 ~~~~~~~~RiI~LSATLpN~~dia~wL~~~-~~~i~~f~~~~RpvpL~~~i-------------------~~~l~~~~~~ 68 (1034)
....+.++|+|+||||+||++++|+||++. ..+++.|+.++||+||++++ +..+.....+
T Consensus 238 ~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (1724)
T 4f92_B 238 IEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGK 317 (1724)
T ss_dssp HHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97379998099995456999999998678888886997999766731799965687541456677889999999997569
Q ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCHHHHHHHH
Q ss_conf 9699995988899999999999985529999876737-899999984310471343424310158802899988999999
Q 001668 69 KSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR-EQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 69 ~~vLIFv~SRk~~~~~a~~L~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~d~~L~~~l~~GV~~hHagLs~~dR~~Ve 147 (1034)
+++||||+||+.|+.+|+.|.+.+...+....+.... ...+.+......+.+..|++++..|||+|||||++.+|..||
T Consensus 318 ~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE 397 (1724)
T 4f92_B 318 NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVE 397 (1724)
T ss_dssp CCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHH
T ss_conf 96899878889999999999998764552122133330578887766402444889998645778875999999999999
Q ss_pred HHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 97423895158704322145688973999942421017888546689889998603148999899418999922621789
Q 001668 148 GLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227 (1034)
Q Consensus 148 ~lF~~G~i~VLVaTstLa~GVNlPa~~VVI~~t~~y~~~~~~~~p~s~~~~lQmiGRAGR~g~d~~G~aiil~~~~~~~~ 227 (1034)
++|++|.++|||||+|||||||+||++|||++++.|++..+++.|+++.+|+||+|||||+|+|..|.+|+++...+..+
T Consensus 398 ~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~ 477 (1724)
T 4f92_B 398 DLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQY 477 (1724)
T ss_dssp HHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCH
T ss_pred HHHHCCCCEEEEECCHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHH
T ss_conf 99877997499984266713888870699828877047678756389999987640126888887647999835025999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CH-HHHHHHHHHHHH
Q ss_conf 9987417655331022333345699998313479999999999845476630397763322357-85-689799999999
Q 001668 228 YENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVI-SR-DRIEKHMQEVCV 305 (1034)
Q Consensus 228 y~~ll~~~~piES~L~~~l~d~l~aEI~~~~i~~~~daidwl~~T~~y~Rl~~nP~~Y~l~~~~-s~-~~l~~~l~~li~ 305 (1034)
|..+++++.|+||++...+.|++++||+.|++.+.+++++|+++||+|+|+.+||.+|++..+. .. ..++..+.++++
T Consensus 478 ~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~ 557 (1724)
T 4f92_B 478 YLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVH 557 (1724)
T ss_dssp HHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99997499851020331078899999987024789999999964378877532746543671001236378999999999
Q ss_pred HHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999988992886799822557975432113434216999871-7999996779988621233364324723799986
Q 001668 306 QKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLN 384 (1034)
Q Consensus 306 ~~l~~L~~~~~I~~d~~~~~l~~t~lGri~s~yyI~~~T~~~f~~-l~~~~t~~~iL~iLs~S~EF~~i~lR~~Ek~~L~ 384 (1034)
.++..|.++++|.+|+++..+.+|++||+||+|||.+.|+..|.. +.+.++..++|+++|.|.||+.+++|++|+.+|+
T Consensus 558 ~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~ 637 (1724)
T 4f92_B 558 TAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQ 637 (1724)
T ss_dssp HHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHH
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHH
T ss_conf 99999988799014067786434448799998368999999998635888999999999757752166770778999999
Q ss_pred HHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 74211477411410588432122200158999999988842999989852365899999976999999999999714659
Q 001668 385 VINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYK 464 (1034)
Q Consensus 385 ~L~~~~~~~l~~~~~g~~~k~~~~~~~~~~Ka~iLLqAhl~R~~~l~d~sL~~D~~~Il~~a~rLl~al~eIa~~~~~~~ 464 (1034)
+|.. .+++++. ..+..++.|+++|||+|+++. .+.+++|.+|+.+|.++|.||++|+++|+..++|..
T Consensus 638 ~l~~----~~~~~~~-------~~~~~~~~Kv~~Llq~~i~~~-~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~ 705 (1724)
T 4f92_B 638 KLLE----RVPIPVK-------ESIEEPSAKINVLLQAFISQL-KLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQ 705 (1724)
T ss_dssp HHHH----HSSSCCC-------SCCSSHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHH
T ss_pred HHHH----CCCCCCC-------CCCCCHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9982----3997768-------878885899999999997699-866542898999999999999999999999859899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 99999999999984317899622334688999999999968999988885079477977407998226799999831999
Q 001668 465 GAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPP 544 (1034)
Q Consensus 465 ~~l~~l~Lsq~IvQalW~~~~p~LlQLPhi~~~~vk~L~~~gi~Sl~~L~~~d~~e~e~Ll~~~~~~g~~I~~~i~~lPp 544 (1034)
.+.+++.|+||+.+++|++..| |+|||+++.+.+++++++|+ ++.++.++++++++.++ +.+++|+.+.+.+++||
T Consensus 706 ~~~~~l~l~k~i~~~~w~~~~~-L~q~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~l~~~~-~~~~~g~~i~~~~~~~P- 781 (1724)
T 4f92_B 706 LTDKTLNLCKMIDKRMWQSMCP-LRQFRKLPEEVVKKIEKKNF-PFERLYDLNHNEIGELI-RMPKMGKTIHKYVHLFP- 781 (1724)
T ss_dssp HHHHHHHHHHHHHHTSCTTSCG-GGGSTTSCHHHHHHHHTSSC-CGGGGGGCCHHHHHHHH-TCSTTHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHHHHHCCCCCCCC-EECCCCCCHHHHHHHHHCCC-CHHHHHHCCHHHHHHHH-CCCHHHHHHHHHHHHCC-
T ss_conf 9999999999998288998883-30689999999999982699-99999728988999997-79457999999999789-
Q ss_pred EEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCC----CCEEEEEECCCCEEEEEEEEEEECC--CCCEEEEEEEECC
Q ss_conf 047999997762378299999999946896567631----0069999558991999653322035--7631899996089
Q 001668 545 KVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRH----YADMIVGAEENNMVLFHEKIRVDEF--SSPYSVTVLSSNP 618 (1034)
Q Consensus 545 ~Lei~~ke~~v~~~~~~~L~Vkl~~~~~~~~~~k~~----~~wiiV~D~k~n~Il~~~kit~~~~--~~~~tv~l~f~aP 618 (1034)
+++++.. ++|.....+.|.+++.+.+.|..+.| .||++|+|.+++.|++++++.+... ...+.+.+..+..
T Consensus 782 ~~~~~~~---~~p~~~~~~~~~~~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~ 858 (1724)
T 4f92_B 782 KLELSVH---LQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVF 858 (1724)
T ss_dssp CEEEEEE---EEESSSSEEEEEEEEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECC
T ss_pred CCEEEEE---EEECCCCEEEEEEEEEECCCCCHHHCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf 8538999---9716775599999986446355322577305999999469883888889986300267745999999888
Q ss_pred CCCEEEEEEEEEECCEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9930899999995742103605899998504865443457677998899853212468762124770
Q 001668 619 QQGKLTVKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTP 685 (1034)
Q Consensus 619 ~~G~~~f~v~viSDsYiG~D~~~~i~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~~e~~~~~~ 685 (1034)
.+...+|.+.++||.|+|++. .+++. ++++..|.++|+++++.|+++.+..++..+
T Consensus 859 ~~~p~~~~i~~~sd~w~~~~~--~~~~~---------~~~~~~p~~~~~~t~lldl~plp~s~L~~~ 914 (1724)
T 4f92_B 859 EPLPPQYFIRVVSDRWLSCET--QLPVS---------FRHLILPEKYPPPTELLDLQPLPVSALRNS 914 (1724)
T ss_dssp SSCCSEEEEEEEESSSTTCEE--EEEEE---------CTTCCCCCCCCCCCCCCCCCCCBGGGSCCH
T ss_pred CCCCCEEEEEEEECCCCCCCC--EEEEC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 899981899999740107773--46542---------423447888899874345887885544688
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=867.26 Aligned_cols=619 Identities=23% Similarity=0.373 Sum_probs=558.5
Q ss_pred HHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEECCCCCEECCHHHHH-------------------HHHHHHHCC
Q ss_conf 2341289998499994685599999999299977377414552011328999-------------------999996469
Q 001668 7 EMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-------------------FDILMQYSR 67 (1034)
Q Consensus 7 ~L~~~~~~~~RiI~LSATLpN~~dia~wL~~~~~~i~~f~~~~RpvpL~~~i-------------------~~~l~~~~~ 67 (1034)
++......++|+|+||||++|++++|+||++....+++|.+.+||+||+.++ +..+.....
T Consensus 1075 ~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 1154 (1724)
T 4f92_B 1075 YISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP 1154 (1724)
T ss_dssp HHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCS
T ss_pred HHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHCC
T ss_conf 99863688863999928889999999986799877589488888887089998036777166665320149999998537
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCHHHHHHHH
Q ss_conf 99699995988899999999999985529999876737899999984310471343424310158802899988999999
Q 001668 68 GKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIE 147 (1034)
Q Consensus 68 ~~~vLIFv~SRk~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hHagLs~~dR~~Ve 147 (1034)
++++||||+||+.|+.+|..|...+........++... .+.+......+.|..|.+++..|||+|||||++.+|..||
T Consensus 1155 ~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1155 KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCT--EKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSC--HHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCCC--HHHHHHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHH
T ss_conf 99721557888999999999998876264302220133--9999999864142889998747889977999999999999
Q ss_pred HHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 97423895158704322145688973999942421017888546689889998603148999899418999922621789
Q 001668 148 GLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227 (1034)
Q Consensus 148 ~lF~~G~i~VLVaTstLa~GVNlPa~~VVI~~t~~y~~~~~~~~p~s~~~~lQmiGRAGR~g~d~~G~aiil~~~~~~~~ 227 (1034)
++|++|.++|||||+|||||||+|+++|||.++++|++..+++.|+++.+|+||+|||||+|+|..|.|+++|+..+..+
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~ 1312 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDF 1312 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHH
T ss_pred HHHHCCCCEEEEECHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHH
T ss_conf 99977998499988699757898861899956711367555667799999997615135788788628999965457789
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99874176553310223333456999983134799999999998454766303977633223578568979999999999
Q 001668 228 YENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQK 307 (1034)
Q Consensus 228 y~~ll~~~~piES~L~~~l~d~l~aEI~~~~i~~~~daidwl~~T~~y~Rl~~nP~~Y~l~~~~s~~~l~~~l~~li~~~ 307 (1034)
|+++++++.|+||+|...+.+|++++|+.+++.+.+++++|++|||+|+|+.+||+||++. +.+...++.+++++++++
T Consensus 1313 ~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~-~~~~~~~~~~l~~lv~~~ 1391 (1724)
T 4f92_B 1313 FKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQ-GISHRHLSDHLSELVEQT 1391 (1724)
T ss_dssp HHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCS-CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf 9997379970354544111789999998543488999999997307999873073202566-533556789999999999
Q ss_pred HHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999988992886799822557975432113434216999871-799999677998862123336432472379998674
Q 001668 308 VDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVI 386 (1034)
Q Consensus 308 l~~L~~~~~I~~d~~~~~l~~t~lGri~s~yyI~~~T~~~f~~-l~~~~t~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L 386 (1034)
++.|.+++||.+++++ .+.||++|+|||+|||++.|+..|.. +...++..++|++||.|.||.++++|++|+..+++|
T Consensus 1392 l~~L~~~~~I~~~~~~-~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l 1470 (1724)
T 4f92_B 1392 LSDLEQSKCISIEDEM-DVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQL 1470 (1724)
T ss_dssp HHHHHHTTSEEEETTT-EEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHH
T ss_pred HHHHHHCCCEEECCCC-CEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999988899986998-786668999999977899999999985443698888998840784545664360689999999
Q ss_pred HHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 21147741141058843212220015899999998884299998985236589999997699999999999971465999
Q 001668 387 NIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGA 466 (1034)
Q Consensus 387 ~~~~~~~l~~~~~g~~~k~~~~~~~~~~Ka~iLLqAhl~R~~~l~d~sL~~D~~~Il~~a~rLl~al~eIa~~~~~~~~~ 466 (1034)
.. .+++++. ...+..++.|+++|||||++|.+. + ..+..|+..|++++.||++||++++...+|+..+
T Consensus 1471 ~~----~~~~~~~------~~~~~~~~~K~~lLlqa~~~r~~l-~-~~~~~D~~~i~~~~~rl~~a~~d~~~~~g~~~~~ 1538 (1724)
T 4f92_B 1471 AQ----KVPHKLN------NPKFNDPHVKTNLLLQAHLSRMQL-S-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPA 1538 (1724)
T ss_dssp HH----HSSSCCS------SCCTTCHHHHHHHHHHHHHTTCCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHH
T ss_pred HH----HCCCCCC------CCCCCCHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 86----3897777------444578899999999999778867-7-6799999999999999999999999978988999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 99999999998431789962233468899999999996899998888507947797740799822679999983199904
Q 001668 467 VNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKV 546 (1034)
Q Consensus 467 l~~l~Lsq~IvQalW~~~~p~LlQLPhi~~~~vk~L~~~gi~Sl~~L~~~d~~e~e~Ll~~~~~~g~~I~~~i~~lPp~L 546 (1034)
+++|+|+|||.||+|++.++ |+|||||+...+++|.++|++|+.+++++++++++.+++++++++.+|+++++++| ++
T Consensus 1539 ~~~~~l~q~l~~~~w~~~~~-L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P-~i 1616 (1724)
T 4f92_B 1539 LAAMELAQMVTQAMWSKDSY-LKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP-NI 1616 (1724)
T ss_dssp HHHHHHHHHHHTTCCTTSCG-GGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSC-CE
T ss_pred HHHHHHHHHHHHCCCCCCCC-EECCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCC-CE
T ss_conf 99999999999478867768-73479989899999997799999999858999999997799689999999998689-63
Q ss_pred EEEEEE---EEEECCCEEEEEEEEEEEC--------CCCCCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf 799999---7762378299999999946--------89656763100699995589919996533220357631899996
Q 001668 547 DMKIEE---IKCQGQGKSKLLITLTRLS--------QSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLS 615 (1034)
Q Consensus 547 ei~~ke---~~v~~~~~~~L~Vkl~~~~--------~~~~~~k~~~~wiiV~D~k~n~Il~~~kit~~~~~~~~tv~l~f 615 (1034)
+++++. ..+..+..+++.|++++.. |.+|..+.+.||++|||.++|.++.++|+++. ....+++.|
T Consensus 1617 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr~~~~---~~~~~~l~f 1693 (1724)
T 4f92_B 1617 ELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQ---QKAKVKLDF 1693 (1724)
T ss_dssp EEEEEEETSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEEECCS---SEEEEEEEE
T ss_pred EEEEEEECCCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEECC---CCCEEEEEE
T ss_conf 89999805731347975999999985477787065678998872277999998899949999988147---786389999
Q ss_pred ECCCCCEEEEEEEEEECCEEECCCEEEEEEE
Q ss_conf 0899930899999995742103605899998
Q 001668 616 SNPQQGKLTVKADLIFEEYIGVDIHQKLVLV 646 (1034)
Q Consensus 616 ~aP~~G~~~f~v~viSDsYiG~D~~~~i~l~ 646 (1034)
.+|.+|.+++.+|++||+|+|+|+++++.+.
T Consensus 1694 ~~p~~g~~~~~~~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1694 VAPATGAHNYTLYFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp ECCSSSCEEEEEEEEESSCSSCCEEEEEEEC
T ss_pred EECCCCCEEEEEEEEECCCCCCCEEEEEECC
T ss_conf 9379995469999983573455636887459
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=527.66 Aligned_cols=488 Identities=20% Similarity=0.307 Sum_probs=392.9
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCCCCEEECCCCCEECCHHHH---------------------HHHHH-HHHCCCCC
Q ss_conf 999849999468559999999929997737741455201132899---------------------99999-96469996
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTK---------------------VFDIL-MQYSRGKS 70 (1034)
Q Consensus 13 ~~~~RiI~LSATLpN~~dia~wL~~~~~~i~~f~~~~RpvpL~~~---------------------i~~~l-~~~~~~~~ 70 (1034)
..++|+|+||||++|..++++|++++. |...+||+|+... ....+ .....+++
T Consensus 170 ~~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (702)
T 2p6r_A 170 NKALRVIGLSATAPNVTEIAEWLDADY-----YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGG 244 (702)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHTTCEE-----EECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHHTTCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC-----CCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 867659997887689999999848972-----368887766468886178231057630144454699999999966997
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 99995988899999999999985529999876737899999984310471343424310158802899988999999974
Q 001668 71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF 150 (1034)
Q Consensus 71 vLIFv~SRk~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hHagLs~~dR~~Ve~lF 150 (1034)
+||||++|+.++.++..|...... ++...+..+.+........+..|.+++..||++|||+|++.+|..+++.|
T Consensus 245 ~LVF~~s~~~~~~~a~~L~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 245 VLVFESTRRGAEKTAVKLSAITAK------YVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHT------TCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_conf 899838878999999999999876------46958899999862455321999999846928866999999999999999
Q ss_pred HCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHH
Q ss_conf 2389515870432214568897399994242101788854668988999860314899989941899992262178-999
Q 001668 151 LKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVH-LYE 229 (1034)
Q Consensus 151 ~~G~i~VLVaTstLa~GVNlPa~~VVI~~t~~y~~~~~~~~p~s~~~~lQmiGRAGR~g~d~~G~aiil~~~~~~~-~y~ 229 (1034)
++|.++|||||++++||||+|++.+||+++++|++ .+.|++..+|+||+|||||+|++..|.|++++...+.. ++.
T Consensus 319 ~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~---~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 395 (702)
T 2p6r_A 319 RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDG---YSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVK 395 (702)
T ss_dssp HTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESS---SEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHH
T ss_pred HCCCCEEEEECCHHHCCCCCCCEEEEECCCEEECC---CCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHH
T ss_conf 87998499978388665788733999847623078---777589999999843327999998736999955731899999
Q ss_pred HHHC-CCCCCCCHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8741-76553310223--33345699998313479999999999845476630397763322357856897999999999
Q 001668 230 NLLN-GCEMVESQLLS--CVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQ 306 (1034)
Q Consensus 230 ~ll~-~~~piES~L~~--~l~d~l~aEI~~~~i~~~~daidwl~~T~~y~Rl~~nP~~Y~l~~~~s~~~l~~~l~~li~~ 306 (1034)
+++. .+.+++|+|.. .+.++++++++.|.+.+.+++.+|+++||+|+++. . ++.+.+++
T Consensus 396 ~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~-----------------~~~~~~~~ 457 (702)
T 2p6r_A 396 RYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I-----------------SLSYELER 457 (702)
T ss_dssp TTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C-----------------CCHHHHHH
T ss_pred HHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-H-----------------HHHHHHHH
T ss_conf 99608998846516860558999999997177888999999998506777501-7-----------------89999999
Q ss_pred HHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-CCCC-CCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999988992886799822557975432113434216999871-7999-996779988621233364324723799986
Q 001668 307 KVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVN-CGLEDALHTVCHAEEIAWIQLRRNEKKLLN 384 (1034)
Q Consensus 307 ~l~~L~~~~~I~~d~~~~~l~~t~lGri~s~yyI~~~T~~~f~~-l~~~-~t~~~iL~iLs~S~EF~~i~lR~~Ek~~L~ 384 (1034)
+++.|...|+|..+ ..+.+|++|++|++||+++.|+++|.. +... .+..+++.++|.+.||..+++|+.| ..+.
T Consensus 458 al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~ 533 (702)
T 2p6r_A 458 VVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVE 533 (702)
T ss_dssp HHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHH
T ss_pred HHHHHHHCCCEEEC---CEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCH-HHHH
T ss_conf 99999988594289---9066486999999985789899999997430468789999995377444457778765-9999
Q ss_pred HHHHCCCCCC-EEE-ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC----CC-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7421147741-141-05884321222001589999999888429999898----52-36589999997699999999999
Q 001668 385 VINIDKDGRL-RFH-INGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHD----LS-LTQDMNSISTNGSRIAKCMRDYF 457 (1034)
Q Consensus 385 ~L~~~~~~~l-~~~-~~g~~~k~~~~~~~~~~Ka~iLLqAhl~R~~~l~d----~s-L~~D~~~Il~~a~rLl~al~eIa 457 (1034)
++..+..+.+ +.+ +... ......+..|+++|||+|++|.+ +.+ +. +..|+.+|+++|.||++||.+||
T Consensus 534 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~k~~~lL~~~~~~~~-l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~ 608 (702)
T 2p6r_A 534 EEAFRLRKELSYYPSDFSV----EYDWFLSEVKTALCLKDWIEEKD-EDEICAKYGIAPGDLRRIVETAEWLSNAMNRIA 608 (702)
T ss_dssp HHHHHHGGGSSCCCCTTST----THHHHHHHHHHHHHHHHHHTTCC-HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998654666678630000----12345666999999999982798-688998857767759999999999999999999
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 97146599999999999998431789962233468899999999996899998888507947797740799822679999
Q 001668 458 IFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKE 537 (1034)
Q Consensus 458 ~~~~~~~~~l~~l~Lsq~IvQalW~~~~p~LlQLPhi~~~~vk~L~~~gi~Sl~~L~~~d~~e~e~Ll~~~~~~g~~I~~ 537 (1034)
...+|. .++.|+|||.||+|++.+| |+|||||+..++++|+++|++|+.+|++++ +++..+++ +++|+++.+
T Consensus 609 ~~~g~~----~l~~l~~ri~~gv~~~~~~-L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~--~~~~~~i~~ 680 (702)
T 2p6r_A 609 EEVGNT----SVSGLTERIKHGVKEELLE-LVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIG--RGIAERVVE 680 (702)
T ss_dssp HHTTCC----SSTTHHHHHHHTCCGGGHH-HHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHC--HHHHHHHHH
T ss_pred HHCCHH----HHHHHHHHHHCCCCCCHHH-HHCCCCCCHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHC--HHHHHHHHH
T ss_conf 973999----9999999998089822275-615899999999999976999899998615-89999858--457999999
Q ss_pred HHHCCCCEEEEEEE
Q ss_conf 98319990479999
Q 001668 538 SLLSLPPKVDMKIE 551 (1034)
Q Consensus 538 ~i~~lPp~Lei~~k 551 (1034)
.+. +| ++++++.
T Consensus 681 ~~~-~p-~~~~~~~ 692 (702)
T 2p6r_A 681 GIS-VK-SLNPESA 692 (702)
T ss_dssp HHH-HH-C------
T ss_pred HCC-CC-CCCCCHH
T ss_conf 568-88-5681045
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=518.86 Aligned_cols=495 Identities=22% Similarity=0.259 Sum_probs=389.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHCCCCCCEEECCCCCEECCHHHH-------------------HHHHH-HHHCCCCCEEEE
Q ss_conf 9849999468559999999929997737741455201132899-------------------99999-964699969999
Q 001668 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTK-------------------VFDIL-MQYSRGKSALVF 74 (1034)
Q Consensus 15 ~~RiI~LSATLpN~~dia~wL~~~~~~i~~f~~~~RpvpL~~~-------------------i~~~l-~~~~~~~~vLIF 74 (1034)
++|+|+||||++|..++++|++.+. +...+||+|+... .+..+ .....++++|||
T Consensus 169 ~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF 243 (720)
T 2zj8_A 169 KAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIF 243 (720)
T ss_dssp TBEEEEEECCCSCHHHHHHHTTEEE-----EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCC-----CCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7769997588689999999829860-----37898887636889757813116532000169999999998679988999
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 598889999999999998552999987673789999998431----0471343424310158802899988999999974
Q 001668 75 CSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL----SCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLF 150 (1034)
Q Consensus 75 v~SRk~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~d~~L~~~l~~GV~~hHagLs~~dR~~Ve~lF 150 (1034)
|++|+.++.++..|...... ++.. .....+..... ...+..|.+++..||++|||+|++.+|..+++.|
T Consensus 244 ~~sr~~~~~~a~~L~~~~~~------~~~~-~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 244 VNMRRKAERVALELSKKVKS------LLTK-PEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp CSCHHHHHHHHHHHHHHHGG------GSCH-HHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHH------HCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_conf 65879999999999999987------4590-6689999999987516650889999851946324899999999999999
Q ss_pred HCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHH
Q ss_conf 2389515870432214568897399994242101788854668988999860314899989941899992262178-999
Q 001668 151 LKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVH-LYE 229 (1034)
Q Consensus 151 ~~G~i~VLVaTstLa~GVNlPa~~VVI~~t~~y~~~~~~~~p~s~~~~lQmiGRAGR~g~d~~G~aiil~~~~~~~-~y~ 229 (1034)
++|.++|||||++++||||+|++.+||+++++|++ . ++.|++..+|+||+|||||+|++..|.|++++...+.. +++
T Consensus 317 ~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~-~-g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 394 (720)
T 2zj8_A 317 RKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSD-F-GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMN 394 (720)
T ss_dssp HTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCS-S-SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHH
T ss_pred HCCCCEEEEECCHHHCCCCCCCEEEEECCCEEECC-C-CCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHH
T ss_conf 77997599988186662888852899848724068-8-876089999999875448998888766999966710999999
Q ss_pred HHHC-CCCCCCCHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8741-76553310223--33345699998313479999999999845476630397763322357856897999999999
Q 001668 230 NLLN-GCEMVESQLLS--CVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQ 306 (1034)
Q Consensus 230 ~ll~-~~~piES~L~~--~l~d~l~aEI~~~~i~~~~daidwl~~T~~y~Rl~~nP~~Y~l~~~~s~~~l~~~l~~li~~ 306 (1034)
+++. ...|++|++.. .+.++++++++.+.+.+.+++.+|+++||+|+++.. ..++.+.+++
T Consensus 395 ~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~----------------~~~~~~~~~~ 458 (720)
T 2zj8_A 395 HYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKD----------------TYSLEEKIRN 458 (720)
T ss_dssp HHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSC----------------CHHHHHHHHH
T ss_pred HHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCCC----------------HHHHHHHHHH
T ss_conf 996189987176568604399999999971778899999999982768774364----------------5789999999
Q ss_pred HHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-CCC---CCCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 99999988992886799822557975432113434216999871-799---99967799886212333643247237999
Q 001668 307 KVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPV---NCGLEDALHTVCHAEEIAWIQLRRNEKKL 382 (1034)
Q Consensus 307 ~l~~L~~~~~I~~d~~~~~l~~t~lGri~s~yyI~~~T~~~f~~-l~~---~~t~~~iL~iLs~S~EF~~i~lR~~Ek~~ 382 (1034)
+++.|...++|..+.+ ..+.+|++|++|++||+.+.|++.|.. +.. ..+..++|.++|.+.||..+++|++|+.+
T Consensus 459 ~l~~L~~~~~i~~~~~-~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~ 537 (720)
T 2zj8_A 459 ILYFLLENEFIEISLE-DKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFER 537 (720)
T ss_dssp HHHHHHHTTSEEECTT-SCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHH
T ss_pred HHHHHHHCCCEEECCC-CCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 9999998879357789-827557699999997389999999999987642589888999975058532126637778999
Q ss_pred HHHHHHCC--CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC----C-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86742114--7741141058843212220015899999998884299998985----2-365899999976999999999
Q 001668 383 LNVINIDK--DGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDL----S-LTQDMNSISTNGSRIAKCMRD 455 (1034)
Q Consensus 383 L~~L~~~~--~~~l~~~~~g~~~k~~~~~~~~~~Ka~iLLqAhl~R~~~l~d~----s-L~~D~~~Il~~a~rLl~al~e 455 (1034)
+.++..+. ....+.|+...........+.++.|+++|||+|++|.+ +.+. . +..|+.+++++|.||++|+.+
T Consensus 538 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~-l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~ 616 (720)
T 2zj8_A 538 LEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVP-EGEIVEKYSVEPGDIYRIVETAEWLVYSLKE 616 (720)
T ss_dssp HHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998563201236553344420135567777999999999981798-7888888388767699999999999999999
Q ss_pred HHHHHCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCHHHH
Q ss_conf 9997146599999999-999998431789962233468899999999996899998888507947797740799822679
Q 001668 456 YFIFRKNYKGAVNSAL-LAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNH 534 (1034)
Q Consensus 456 Ia~~~~~~~~~l~~l~-Lsq~IvQalW~~~~p~LlQLPhi~~~~vk~L~~~gi~Sl~~L~~~d~~e~e~Ll~~~~~~g~~ 534 (1034)
||...+|.. +.++|. |+|||.||+|++..| |+|||||+..++++|+++|++|+.++++++++++..+-+......+.
T Consensus 617 i~~~~g~~~-~~~~l~~l~~rl~~gv~~e~~~-L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~ 694 (720)
T 2zj8_A 617 IAKVLGAYE-IVDYLETLRVRVKYGIREELIP-LMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEA 694 (720)
T ss_dssp HHHHHTCGG-GHHHHHHHHHHHHHTCCGGGGG-GTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHH
T ss_pred HHHHCCCHH-HHHHHHHHHHHHHCCCCCCCHH-HHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999749699-9999999999997589801003-56279998999999997699989999848999998747489999999
Q ss_pred HHHHHHCCC
Q ss_conf 999983199
Q 001668 535 IKESLLSLP 543 (1034)
Q Consensus 535 I~~~i~~lP 543 (1034)
+..++.++|
T Consensus 695 ~~~~~~~~~ 703 (720)
T 2zj8_A 695 IFKFLGKNV 703 (720)
T ss_dssp HHHHHC---
T ss_pred HHHHCCCCC
T ss_conf 998633223
No 5
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=509.30 Aligned_cols=488 Identities=23% Similarity=0.263 Sum_probs=392.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHCCCCCCEEECCCCCEECCHH----------------------------HHHHHHH-HHH
Q ss_conf 98499994685599999999299977377414552011328----------------------------9999999-964
Q 001668 15 SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLT----------------------------TKVFDIL-MQY 65 (1034)
Q Consensus 15 ~~RiI~LSATLpN~~dia~wL~~~~~~i~~f~~~~RpvpL~----------------------------~~i~~~l-~~~ 65 (1034)
++|+|+||||++|..++++|++++. +...+||+|+. ...+..+ ...
T Consensus 175 ~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (715)
T 2va8_A 175 RRNLLALSATISNYKQIAKWLGAEP-----VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL 249 (715)
T ss_dssp TSEEEEEESCCTTHHHHHHHHTCEE-----EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHCCCC-----CCCCCCCCCCEEEEEECCCCCCCEEEECCCCHHHHCCCCHHHHHHHHHHH
T ss_conf 6728997178799999999849974-----57999988746888835876654046527604432134438999999998
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCEEECCCCCC
Q ss_conf 699969999598889999999999998552999987673789999998431------04713434243101588028999
Q 001668 66 SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASL------SCSDKQMQSYILYGVGYHNGGLC 139 (1034)
Q Consensus 66 ~~~~~vLIFv~SRk~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~d~~L~~~l~~GV~~hHagLs 139 (1034)
..++++||||++|+.++.++..|...... .++.. .....+..... ...+..|.+++..||++|||+|+
T Consensus 250 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~-----~~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~ 323 (715)
T 2va8_A 250 SKNGQVLVFRNSRKMAESTALKIANYMNF-----VSLDE-NALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLS 323 (715)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTTS-----SCCCH-HHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSC
T ss_pred HCCCCEEEEECCHHHHHHHHHHHHHHHHH-----CCCCH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCC
T ss_conf 66997799979889999999999998765-----42886-7789999999986634553229999999668788789999
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC-CCCCCHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 88999999974238951587043221456889739999424210178885-46689889998603148999899418999
Q 001668 140 LKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGL-YMEHDRSTILQMCGRAGRPPFNDTGTVII 218 (1034)
Q Consensus 140 ~~dR~~Ve~lF~~G~i~VLVaTstLa~GVNlPa~~VVI~~t~~y~~~~~~-~~p~s~~~~lQmiGRAGR~g~d~~G~aii 218 (1034)
+.+|..+++.|++|.++|||||++++||||+|++.+||+++++|++..+. +.|++..+|+||+|||||+|++..|.|++
T Consensus 324 ~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 403 (715)
T 2va8_A 324 KALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIV 403 (715)
T ss_dssp HHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCEEEEEECCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 99999999999869985999780876616888549999187564466777877599999999842427998888756999
Q ss_pred EECCCCH--HHHHHHHC-CCCCCCCHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 9226217--89998741-76553310223--3334569999831347999999999984547663039776332235785
Q 001668 219 MTRRETV--HLYENLLN-GCEMVESQLLS--CVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISR 293 (1034)
Q Consensus 219 l~~~~~~--~~y~~ll~-~~~piES~L~~--~l~d~l~aEI~~~~i~~~~daidwl~~T~~y~Rl~~nP~~Y~l~~~~s~ 293 (1034)
++...+. .++.+++. .+.+++|++.. .+.++++++++.|.+.+.+++.+|+++||+|++...
T Consensus 404 l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~------------- 470 (715)
T 2va8_A 404 VVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVD------------- 470 (715)
T ss_dssp ECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHH-------------
T ss_pred EECCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCH-------------
T ss_conf 9678067999999997089987353378666799999999851566889999999985078764263-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-CCC--CCCHHHHHHHHHCCCCC
Q ss_conf 689799999999999999988992886799822557975432113434216999871-799--99967799886212333
Q 001668 294 DRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPV--NCGLEDALHTVCHAEEI 370 (1034)
Q Consensus 294 ~~l~~~l~~li~~~l~~L~~~~~I~~d~~~~~l~~t~lGri~s~yyI~~~T~~~f~~-l~~--~~t~~~iL~iLs~S~EF 370 (1034)
.-++++++.|...|+|..++ ..+.+|++|++|++||+++.++++|.. +.. ..+..+++.++|.+.||
T Consensus 471 --------~~~~~al~~L~~~g~i~~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~ 540 (715)
T 2va8_A 471 --------VYFDRAIRWLLEHSFIKEEG--NTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDG 540 (715)
T ss_dssp --------HHHHHHHHHHHHTTSEEECS--SEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTS
T ss_pred --------HHHHHHHHHHHHCCCEEECC--CEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
T ss_conf --------88999999998884976669--86866768999999748986799999986542578789999995268433
Q ss_pred CCCCCCHHHHHHHHHHHHCC-CC-CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC----CCH-HHHHHHHH
Q ss_conf 64324723799986742114-77-4114105884321222001589999999888429999898----523-65899999
Q 001668 371 AWIQLRRNEKKLLNVINIDK-DG-RLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHD----LSL-TQDMNSIS 443 (1034)
Q Consensus 371 ~~i~lR~~Ek~~L~~L~~~~-~~-~l~~~~~g~~~k~~~~~~~~~~Ka~iLLqAhl~R~~~l~d----~sL-~~D~~~Il 443 (1034)
..+++|++|+.++.++..+. .. ..+.++... ....+.++.|+++|||+|++|.+ +.+ +.+ ..|+.+++
T Consensus 541 ~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~k~~~ll~~~~~~~~-~~~i~~~y~~~~gdl~~l~ 615 (715)
T 2va8_A 541 PLVSVGRNEEEELIELLEDLDCELLIEEPYEED----EYSLYINALKVALIMKDWMDEVD-EDTILSKYNIGSGDLRNMV 615 (715)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHH----HHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCC----CHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHCCCHHHHHHHH
T ss_conf 457648678999999998521111136665431----02345777999999999984998-7899999789824499999
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHH
Q ss_conf 97699999999999971465999999999999984317899622334688999999999968999988885079477977
Q 001668 444 TNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEI 523 (1034)
Q Consensus 444 ~~a~rLl~al~eIa~~~~~~~~~l~~l~Lsq~IvQalW~~~~p~LlQLPhi~~~~vk~L~~~gi~Sl~~L~~~d~~e~e~ 523 (1034)
+.|.+|++++.+||...+|...+..+..|+++|.+|+|++..| |+|||||+..++++|+++|++|+.+|+ ++++++..
T Consensus 616 ~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~-L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~ 693 (715)
T 2va8_A 616 ETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLE-LVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKN 693 (715)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHH-HHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHCC-HHHCCCCCHHHHHHHHHCCCCCHHHHH-CCHHHHHH
T ss_conf 9999999999999999494889999999999998289832140-541899998999999985999899982-79999999
Q ss_pred HHCCCCCHHHHHHH-HHHCCCCEE
Q ss_conf 40799822679999-983199904
Q 001668 524 VTGRKYPFGNHIKE-SLLSLPPKV 546 (1034)
Q Consensus 524 Ll~~~~~~g~~I~~-~i~~lPp~L 546 (1034)
+++ +++|+++++ ...++| .+
T Consensus 694 ~l~--~~~~~~i~~~~~~~~~-~~ 714 (715)
T 2va8_A 694 LLG--QKLGEKVVQEAARLLN-RF 714 (715)
T ss_dssp HHC--HHHHHHHHHHHHHHHC---
T ss_pred HHC--HHHHHHHHHHHHHHHC-CC
T ss_conf 967--5489999999987625-57
No 6
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=1.00 E-value=1 Score=439.57 Aligned_cols=309 Identities=15% Similarity=0.186 Sum_probs=275.6
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHH-CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 9822557975432113434216999871-799999677998862123336432472379998674211477411410588
Q 001668 323 GFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGD 401 (1034)
Q Consensus 323 ~~~l~~t~lGri~s~yyI~~~T~~~f~~-l~~~~t~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L~~~~~~~l~~~~~g~ 401 (1034)
+..+.||++|+|||+|||++.||+.|.. ++++++..++|++||.|.||.++++|++|+.++.+|... +|+++..
T Consensus 6 ~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~----~~~~~~~- 80 (328)
T 3im1_A 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKR----LPLRFPE- 80 (328)
T ss_dssp CCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTT----SSSCCCT-
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHH----CCCCCCC-
T ss_conf 98766781669999878789999999997332489999999844678887463582068999999976----8876666-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 43212220015899999998884299998985236589999997699999999999971465999999999999984317
Q 001668 402 KGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLW 481 (1034)
Q Consensus 402 ~~k~~~~~~~~~~Ka~iLLqAhl~R~~~l~d~sL~~D~~~Il~~a~rLl~al~eIa~~~~~~~~~l~~l~Lsq~IvQalW 481 (1034)
+..++.++.|+++|||||++|.+ +++ +|.+|+.+|+++|.||++||++|+..++|+. +.++|.|+|||+||+|
T Consensus 81 ----~~~~~~~~~K~~lLLqa~isr~~-l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w 153 (328)
T 3im1_A 81 ----HTSSGSVSFKVFLLLQAYFSRLE-LPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVW 153 (328)
T ss_dssp ----TSCSSSHHHHHHHHHHHHHHTCC-CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSC
T ss_pred ----CCCCCCHHHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHCC
T ss_conf ----67789878999999999977999-976-8999999999999999999999997289389-9999999999995369
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEE---EEEEECC
Q ss_conf 8996223346889999999999689999888850794779774079982267999998319990479999---9776237
Q 001668 482 DDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIE---EIKCQGQ 558 (1034)
Q Consensus 482 ~~~~p~LlQLPhi~~~~vk~L~~~gi~Sl~~L~~~d~~e~e~Ll~~~~~~g~~I~~~i~~lPp~Lei~~k---e~~v~~~ 558 (1034)
++.+| |+|||||+.+.+++++++|++++++|+++++++++.+++.++++++++.+++++|| .|+++++ +..++++
T Consensus 154 ~~~~p-L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P-~l~v~~~v~~~~~i~~~ 231 (328)
T 3im1_A 154 DVDNP-LRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYP-NVELTYSLNNSDSLISG 231 (328)
T ss_dssp TTSCG-GGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCC-CEEEEEEETTGGGCCTT
T ss_pred CCCCC-EECCCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCC
T ss_conf 99996-15799989899999875799889998608999998672899999999999998689-87999996587731689
Q ss_pred CEEEEEEEEEEECCC---------CCCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEE
Q ss_conf 829999999994689---------65676310069999558991999653322035763189999608999308999999
Q 001668 559 GKSKLLITLTRLSQS---------VQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADL 629 (1034)
Q Consensus 559 ~~~~L~Vkl~~~~~~---------~~~~k~~~~wiiV~D~k~n~Il~~~kit~~~~~~~~tv~l~f~aP~~G~~~f~v~v 629 (1034)
+.++++|++++.+.+ +|..+.+.||++|||.++|+|+..+|+++.. ...+++++|++|++|.++|++++
T Consensus 232 ~~~~l~v~l~~~~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~--~~~~~~~~f~~p~~g~~~~~v~~ 309 (328)
T 3im1_A 232 VKQKITIQLTRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNK--ETQQYELEFDTPTSGKHNLTIWC 309 (328)
T ss_dssp SEEEEEEEEEESSCCSCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCS--SEEEEEEEEECCCSEEEEEEEEE
T ss_pred CEEEEEEEEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCC--CCEEEEEEEECCCCCCEEEEEEE
T ss_conf 7289999999888887871778999998647889999988899699985331466--65179999976899857899999
Q ss_pred EECCEEECCCEEEEEEEE
Q ss_conf 957421036058999985
Q 001668 630 IFEEYIGVDIHQKLVLVK 647 (1034)
Q Consensus 630 iSDsYiG~D~~~~i~l~~ 647 (1034)
+||+|+|+|++..+.+.|
T Consensus 310 vsD~ylG~d~~~~~~l~V 327 (328)
T 3im1_A 310 VCDSYLDADKELSFEINV 327 (328)
T ss_dssp EESSCSSCCEEEEEEEEE
T ss_pred EECCCCCEEEEEEEEEEE
T ss_conf 956876503798798886
No 7
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=1.00 E-value=1 Score=436.85 Aligned_cols=306 Identities=17% Similarity=0.244 Sum_probs=274.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHH-CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 22557975432113434216999871-79999967799886212333643247237999867421147741141058843
Q 001668 325 LLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKG 403 (1034)
Q Consensus 325 ~l~~t~lGri~s~yyI~~~T~~~f~~-l~~~~t~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L~~~~~~~l~~~~~g~~~ 403 (1034)
.+.||++|+|||+|||++.|++.|+. ++++++..++|++||.|.||.++++|++|+.+|++|... +|+++..
T Consensus 12 ~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~----~~~~~~~--- 84 (339)
T 2q0z_X 12 DVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQK----VPHKLNN--- 84 (339)
T ss_dssp -------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHH----SSSCCSS---
T ss_pred EECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHHH----CCCCCCC---
T ss_conf 463684789999978798899999997152699889999971538775277784449999999985----8775666---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 21222001589999999888429999898523658999999769999999999997146599999999999998431789
Q 001668 404 KRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDD 483 (1034)
Q Consensus 404 k~~~~~~~~~~Ka~iLLqAhl~R~~~l~d~sL~~D~~~Il~~a~rLl~al~eIa~~~~~~~~~l~~l~Lsq~IvQalW~~ 483 (1034)
..++.++.|+++|||||++|.+ ++ .+|.+|+.+|+++|+||++||++|+..++|+.+++++|.|+|||+||+|++
T Consensus 85 ---~~~~~~~~K~~lLLqa~isr~~-l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~ 159 (339)
T 2q0z_X 85 ---PKFNDPHVKTNLLLQAHLSRMQ-LS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSK 159 (339)
T ss_dssp ---CCTTCHHHHHHHHHHHHHTTCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTT
T ss_pred ---CCCCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf ---7899889999999999974788-97-689999999999999999999999997688999999999999999743899
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEE---EEEEECCCE
Q ss_conf 96223346889999999999689999888850794779774079982267999998319990479999---977623782
Q 001668 484 SPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIE---EIKCQGQGK 560 (1034)
Q Consensus 484 ~~p~LlQLPhi~~~~vk~L~~~gi~Sl~~L~~~d~~e~e~Ll~~~~~~g~~I~~~i~~lPp~Lei~~k---e~~v~~~~~ 560 (1034)
.+| |+|||||+.+.+++++++|+.++++|+++++++++.+++..+++++++.+++++|| +|+++++ +..+++++.
T Consensus 160 ~~p-L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P-~l~v~~~v~~~~~i~~~~~ 237 (339)
T 2q0z_X 160 DSY-LKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP-NIELSYEVVDKDSIRSGGP 237 (339)
T ss_dssp SCG-GGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSC-CEEEEEEETTGGGCBTTSE
T ss_pred CCC-EECCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCC
T ss_conf 995-00699979999999986599979999749999999997899999999999998689-6799999816861238970
Q ss_pred EEEEEEEEEEC--------CCCCCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 99999999946--------8965676310069999558991999653322035763189999608999308999999957
Q 001668 561 SKLLITLTRLS--------QSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFE 632 (1034)
Q Consensus 561 ~~L~Vkl~~~~--------~~~~~~k~~~~wiiV~D~k~n~Il~~~kit~~~~~~~~tv~l~f~aP~~G~~~f~v~viSD 632 (1034)
++++|++++.. |.+|..+.++||++|||.++|+|++++++++. ...+++++|++|.+|.++|+++++||
T Consensus 238 ~~l~v~l~~~~~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~---~~~~~~l~f~~P~~g~~~~~v~~vSD 314 (339)
T 2q0z_X 238 VVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQ---QKAKVKLDFVAPATGAHNYTLYFMSD 314 (339)
T ss_dssp EEEEEEEEECSSCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCS---SEEEEEEEEECCSSEEEEEEEEEEES
T ss_pred EEEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEECC---CCEEEEEEEECCCCCCEEEEEEEECC
T ss_conf 899999998887787245898998887758999998899989999998226---64489999977889981399999744
Q ss_pred CEEECCCEEEEEEEE
Q ss_conf 421036058999985
Q 001668 633 EYIGVDIHQKLVLVK 647 (1034)
Q Consensus 633 sYiG~D~~~~i~l~~ 647 (1034)
+|+|+|++..+.+.+
T Consensus 315 ~ylG~D~~~~i~~~v 329 (339)
T 2q0z_X 315 AYMGCDQEYKFSVDV 329 (339)
T ss_dssp SCSSCCEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEE
T ss_conf 666764599999997
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=230.86 Aligned_cols=256 Identities=24% Similarity=0.350 Sum_probs=176.6
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHCCC-CCCEEECCCCCEECCHH-----------------------------------
Q ss_conf 899984999946855999999992999-77377414552011328-----------------------------------
Q 001668 12 SLASVRFLAVSATIPNIEDIAEWLNVP-VQGIKRFGEEMRPVKLT----------------------------------- 55 (1034)
Q Consensus 12 ~~~~~RiI~LSATLpN~~dia~wL~~~-~~~i~~f~~~~RpvpL~----------------------------------- 55 (1034)
...++|+|+||||+||..+++.|++.. ...+..+...+||+|+.
T Consensus 318 l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 318 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 47776499972888987999999985158982798347875540689862477642564144220115668999999875
Q ss_pred -----------------------------HHHHHHHH--HHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -----------------------------99999999--64699969999598889999999999998552999987673
Q 001668 56 -----------------------------TKVFDILM--QYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD 104 (1034)
Q Consensus 56 -----------------------------~~i~~~l~--~~~~~~~vLIFv~SRk~~~~~a~~L~~~~~~~~~~~~~~~~ 104 (1034)
..++..+. ....++++||||++|+.|+.++..|.............+..
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 41133211234332222344555443205689999999996289988999584878999999998646997778999999
Q ss_pred --HHHHHHHHHHHHCC-CHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCC
Q ss_conf --78999999843104-713434243101588028999889999999742389515870432214568897399994242
Q 001668 105 --REQQERLREASLSC-SDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQ 181 (1034)
Q Consensus 105 --~~~~~~l~~~~~~~-~d~~L~~~l~~GV~~hHagLs~~dR~~Ve~lF~~G~i~VLVaTstLa~GVNlPa~~VVI~~t~ 181 (1034)
......+....... ....|..++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||++..
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~ 557 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 557 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEEECCC
T ss_conf 99988750464433005688787765157565258998999999999986799849998727765778787459996576
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCC-CHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 101788854668988999860314899989941899992262-17899987417-6553310223333456999983134
Q 001668 182 YFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE-TVHLYENLLNG-CEMVESQLLSCVTEHLTAEIVQMTV 259 (1034)
Q Consensus 182 ~y~~~~~~~~p~s~~~~lQmiGRAGR~g~d~~G~aiil~~~~-~~~~y~~ll~~-~~piES~L~~~l~d~l~aEI~~~~i 259 (1034)
.|++...+ +.+..+|+||+|||||.|.+..|.+++++... ....+..++.+ ..|+.|++.......+|.- ....+
T Consensus 558 ~~d~~~~r--~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnll-~~~~~ 634 (1108)
T 3l9o_A 558 KWDGQQFR--WVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM-RVEGI 634 (1108)
T ss_dssp EESSSCEE--ECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH-HSTTC
T ss_pred CCCCCCCC--CCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HHCCC
T ss_conf 66864456--3899999976363477899985599999558868999999961999631226578599999998-86478
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 799999999998454
Q 001668 260 SDITQAIEWMKCSYL 274 (1034)
Q Consensus 260 ~~~~daidwl~~T~~ 274 (1034)
+. .+++..+|.
T Consensus 635 -~~---~~~l~~sf~ 645 (1108)
T 3l9o_A 635 -SP---EFMLEHSFF 645 (1108)
T ss_dssp -CH---HHHHHHSSH
T ss_pred -CH---HHHHHHHHH
T ss_conf -89---999999899
No 9
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=229.71 Aligned_cols=247 Identities=26% Similarity=0.410 Sum_probs=168.8
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHCCC-CCCEEECCCCCEECCHHH-----------------------------------
Q ss_conf 99984999946855999999992999-773774145520113289-----------------------------------
Q 001668 13 LASVRFLAVSATIPNIEDIAEWLNVP-VQGIKRFGEEMRPVKLTT----------------------------------- 56 (1034)
Q Consensus 13 ~~~~RiI~LSATLpN~~dia~wL~~~-~~~i~~f~~~~RpvpL~~----------------------------------- 56 (1034)
..++|+|+||||+||..+++.|++.. ...+..+....||+|+..
T Consensus 221 ~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 221 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 88886999808889889999999863489748982588766506999954876514643554331347789999997543
Q ss_pred -----------------------------HHHHHHH--HHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf -----------------------------9999999--646999699995988899999999999985529999876737
Q 001668 57 -----------------------------KVFDILM--QYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR 105 (1034)
Q Consensus 57 -----------------------------~i~~~l~--~~~~~~~vLIFv~SRk~~~~~a~~L~~~~~~~~~~~~~~~~~ 105 (1034)
.+...+. ......++||||++|+.|+.++..|... +. ....
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~----~~----~~~~ 372 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL----DF----NSDD 372 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTS----CC----CCHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC----CC----CCHH
T ss_conf 033543222345544455566544433678999999998469998899978899999999999837----89----9767
Q ss_pred HH--H-HHHHHHH--HCCCH------HHHHHHHHCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEE
Q ss_conf 89--9-9999843--10471------343424310158802899988999999974238951587043221456889739
Q 001668 106 EQ--Q-ERLREAS--LSCSD------KQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHT 174 (1034)
Q Consensus 106 ~~--~-~~l~~~~--~~~~d------~~L~~~l~~GV~~hHagLs~~dR~~Ve~lF~~G~i~VLVaTstLa~GVNlPa~~ 174 (1034)
+. . ..+.... +...| ..+..++..||++|||||++.+|..++++|++|.++|||||+++++|||+|+++
T Consensus 373 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 373 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCE
T ss_conf 79999999999987436433110257999998737826777889999999999998669972999812765257888864
Q ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCC-CHHHHHHHHCC-CCCCCCHHHHHHHHHHHH
Q ss_conf 9994242101788854668988999860314899989941899992262-17899987417-655331022333345699
Q 001668 175 VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRE-TVHLYENLLNG-CEMVESQLLSCVTEHLTA 252 (1034)
Q Consensus 175 VVI~~t~~y~~~~~~~~p~s~~~~lQmiGRAGR~g~d~~G~aiil~~~~-~~~~y~~ll~~-~~piES~L~~~l~d~l~a 252 (1034)
+||.+...|++... .|.++.+|+||+|||||.|.+..|.|++++... ....+..++.+ ..|++|++.......++.
T Consensus 453 vVI~~~~kfd~~~~--rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~~ilnl 530 (1010)
T 2xgj_A 453 VVFTSVRKWDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 530 (1010)
T ss_dssp EEESCSEEECSSCE--EECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHHHHHHH
T ss_pred EEEECCCCCCCCCC--CCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 99967730377677--5189999967642105688998559999979987999999998489841004667769999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9983134799999999998454
Q 001668 253 EIVQMTVSDITQAIEWMKCSYL 274 (1034)
Q Consensus 253 EI~~~~i~~~~daidwl~~T~~ 274 (1034)
+....+ +.+ +++..+|.
T Consensus 531 -l~~~~~-~~e---~ll~rsf~ 547 (1010)
T 2xgj_A 531 -MRVEGI-SPE---FMLEHSFF 547 (1010)
T ss_dssp -HHSSSC-CHH---HHHHHCHH
T ss_pred -HHHCCC-CHH---HHHHHHHH
T ss_conf -875589-999---99999899
No 10
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=1.00 E-value=1 Score=220.11 Aligned_cols=297 Identities=15% Similarity=0.194 Sum_probs=190.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHCCCCCCEEECCCC-------CEECCHH---HHHHHHH---HHHCCCCCEEEECCCHHH
Q ss_conf 99849999468559999999929997737741455-------2011328---9999999---964699969999598889
Q 001668 14 ASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEE-------MRPVKLT---TKVFDIL---MQYSRGKSALVFCSTRKG 80 (1034)
Q Consensus 14 ~~~RiI~LSATLpN~~dia~wL~~~~~~i~~f~~~-------~RpvpL~---~~i~~~l---~~~~~~~~vLIFv~SRk~ 80 (1034)
.+.|+|++|||+ +..++++|++... ++..... +.+.+.. ......+ .....++++||||+++++
T Consensus 239 ~~~~iIl~SAT~-~~~~l~~~~~~~~--vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~ 315 (773)
T 2xau_A 239 PDLKIIIMSATL-DAEKFQRYFNDAP--LLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDE 315 (773)
T ss_dssp TTCEEEEEESCS-CCHHHHHHTTSCC--EEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHH
T ss_pred CCCEEEEEECCC-CHHHHHHHHCCCC--CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHH
T ss_conf 786299994335-6899999846898--5453686555388980688245999999999999972689998998998999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHH-----CCCC
Q ss_conf 99999999999855299998767378999999843104713434243101588028999889999999742-----3895
Q 001668 81 AQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFL-----KGDV 155 (1034)
Q Consensus 81 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~L~~~l~~GV~~hHagLs~~dR~~Ve~lF~-----~G~i 155 (1034)
++.++..|...... +.. ........|+++||+|++.+|..+++.|+ +|.+
T Consensus 316 i~~l~~~L~~~~~~----------------l~~---------~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~ 370 (773)
T 2xau_A 316 IEDAVRKISLEGDQ----------------LVR---------EEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR 370 (773)
T ss_dssp HHHHHHHHHHHHHH----------------HHH---------HHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCE
T ss_pred HHHHHHHHHHHHHH----------------HCC---------CCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE
T ss_conf 99999999998876----------------313---------45679759998078999999999985264345788834
Q ss_pred CEEEECCCCCCCCCCCCEEEEEECC----CCCCCCCCCC----CCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 1587043221456889739999424----2101788854----6689889998603148999899418999922621789
Q 001668 156 QVLCTTNTLAHGINLPAHTVVIKST----QYFNKEKGLY----MEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHL 227 (1034)
Q Consensus 156 ~VLVaTstLa~GVNlPa~~VVI~~t----~~y~~~~~~~----~p~s~~~~lQmiGRAGR~g~d~~G~aiil~~~~~~~~ 227 (1034)
+|||||+++++|||+|++.+||++. ..|++..|.. .|.+..+|.||+|||||. ..|.|+.++...+.
T Consensus 371 kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~-- 445 (773)
T 2xau_A 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF-- 445 (773)
T ss_dssp EEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH--
T ss_pred EEEEECCHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCC---CCCEEEEEECHHHH--
T ss_conf 9999676798476768737999479722122256668320330017999998653444789---99879999637884--
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99874176553310223333456999983134799999999998454766303977633223578568979999999999
Q 001668 228 YENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQK 307 (1034)
Q Consensus 228 y~~ll~~~~piES~L~~~l~d~l~aEI~~~~i~~~~daidwl~~T~~y~Rl~~nP~~Y~l~~~~s~~~l~~~l~~li~~~ 307 (1034)
...+.....| | -+...+...+......+ +.+.. .+ ..++....+.+.++
T Consensus 446 ~~~l~~~~~p-E-i~r~~L~~~~L~l~~~g-i~~~~--------------------~f--------~~~~~p~~~~i~~a 494 (773)
T 2xau_A 446 QKELIEQSYP-E-ILRSNLSSTVLELKKLG-IDDLV--------------------HF--------DFMDPPAPETMMRA 494 (773)
T ss_dssp HHTSCSSCCC-G-GGGSCCHHHHHHHHHTT-CCCGG--------------------GC--------CCSSCCCHHHHHHH
T ss_pred CCCCCCCCCC-C-CCCCCHHHHHHHHHHCC-CCCHH--------------------HC--------CCCCCCCHHHHHHH
T ss_conf 0123016897-5-33475899999999849-99723--------------------24--------35579859999999
Q ss_pred HHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 9999988992886799822557975432113434216999871799999677998862123336432472379
Q 001668 308 VDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEK 380 (1034)
Q Consensus 308 l~~L~~~~~I~~d~~~~~l~~t~lGri~s~yyI~~~T~~~f~~l~~~~t~~~iL~iLs~S~EF~~i~lR~~Ek 380 (1034)
++.|...|+| |+++ ..|.+|++|+.+++.+..++++......-....++.+.|.-. +..+.++..++
T Consensus 495 ~~~L~~lgal--d~~~---~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls-~~~~f~~~~~~ 561 (773)
T 2xau_A 495 LEELNYLACL--DDEG---NLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLS-VPNVFIRPTKD 561 (773)
T ss_dssp HHHHHHTTSB--CTTS---CBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHT-SCCCBCCCTTC
T ss_pred HHHHHHCCCC--CCCC---CCCHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCCCCCCHHH
T ss_conf 9999976876--5578---868305642433688899999986212474168999999603-68855187478
Done!