BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001669
(1034 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 296 bits (758), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 167/370 (45%), Positives = 228/370 (61%), Gaps = 33/370 (8%)
Query: 1 METGGGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTHSFTFDHVYGSTGS 60
M G E+ V+VA+ VRPL+ E G + C+ V PG +V +G HV + +
Sbjct: 3 MGLPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDA 62
Query: 61 PSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTG-----FKDGYQTGIIPLV 115
A++ C+ PL++ F+G+NATV AYGQTGSGKTYTMG +D + GI+P
Sbjct: 63 GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLED--EQGIVPRA 120
Query: 116 MNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPP 175
M F I+ D + +HVS++E+ KEE RDLL+ ++
Sbjct: 121 MAEAFKLIDE-NDLLDCLVHVSYLEVYKEEFRDLLEVGTASR-----------------D 162
Query: 176 IQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 235
IQ+RE G + L G EV V L E+ + LE G+ +R TG+T++N+ SSRSH +FT+TL
Sbjct: 163 IQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTL 222
Query: 236 EQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGL 295
EQ R +P L +P + L +K H VDLAGSER +TGS G R KE + IN L
Sbjct: 223 EQ-RGRAPSRLPRPAPG-----QLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSL 276
Query: 296 LALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETL 355
LALGNVISALGD ++R G H+PYRDSK+TR+L+DSLGGN++TVMIAC+SP+ + +ETL
Sbjct: 277 LALGNVISALGDPQRR--GSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETL 334
Query: 356 NTLKYANRAR 365
NTL YA+RA+
Sbjct: 335 NTLNYASRAQ 344
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 287 bits (734), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/371 (44%), Positives = 229/371 (61%), Gaps = 35/371 (9%)
Query: 1 METGGGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG-THSFTFDHVYGSTG 59
M G E+ V+VA+ VRPL+ E G + C+ V PG +V +G F F HV +
Sbjct: 3 MGLPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGF-HVVLAED 61
Query: 60 SPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTG-----FKDGYQTGIIPL 114
+ A++ C+ PL++ F+G+NATV AYGQTGSGKTYTMG +D + GI+P
Sbjct: 62 AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLED--EQGIVPR 119
Query: 115 VMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKP 174
M F I+ D + +HVS++E+ KEE RDLL+ ++
Sbjct: 120 AMAEAFKLIDE-NDLLDCLVHVSYLEVYKEEFRDLLEVGTASR----------------- 161
Query: 175 PIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234
IQ+RE G + L G EV V L E+ + LE G+ +R TG+T++N+ SSRSH +FT+T
Sbjct: 162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVT 221
Query: 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRG 294
L+Q R +P L +P + L +K H VDLAGSER +TGS G KE + IN
Sbjct: 222 LKQ-RGRAPSRLPRPAPG-----QLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSS 275
Query: 295 LLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEET 354
LLALGNVISALGD ++R G ++PYRDSK+TR+L+DSLGGN++TVMIAC+SP+ + +ET
Sbjct: 276 LLALGNVISALGDPQRR--GSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDET 333
Query: 355 LNTLKYANRAR 365
LNTL YA+RA+
Sbjct: 334 LNTLNYASRAQ 344
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 268 bits (685), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/382 (43%), Positives = 221/382 (57%), Gaps = 46/382 (12%)
Query: 6 GEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI----GT-----HSFTFDHVYG 56
G V+V V RP+ G E+A V V QV + GT +FTFD VY
Sbjct: 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVY- 76
Query: 57 STGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVM 116
+ ++DE PLVD + QG+N T+ AYGQTG+GKTYTM D + G+IP
Sbjct: 77 DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSF 136
Query: 117 NVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPI 176
+ +F+ I ++Q ++ + S++EI +EE+RDLL + T ++ + +P
Sbjct: 137 DHIFTHISRSQNQ-QYLVRASYLEIYQEEIRDLL----------SKDQTKRLELKERP-- 183
Query: 177 QIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 236
GV S+ V+ S+KE+ + G+ +R+ G+TNMN SSRSHAIF IT+E
Sbjct: 184 -----DTGVYVKDLSSFVT-KSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIE 237
Query: 237 QMRKLSPVSLGDSSPNESMNEEYL-CAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGL 295
S V L E ++ KL+LVDLAGSER +TG+ G R KE IN L
Sbjct: 238 ----CSEVGLD--------GENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSL 285
Query: 296 LALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETL 355
ALGNVISAL D K H+PYRDSKLTRLLQDSLGGN++TVM+A + PA N EETL
Sbjct: 286 SALGNVISALVDGKS----THIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETL 341
Query: 356 NTLKYANRARNIQNKPIVNRDP 377
TL+YANRA+NI+NKP VN DP
Sbjct: 342 TTLRYANRAKNIKNKPRVNEDP 363
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 240 bits (613), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 209/384 (54%), Gaps = 45/384 (11%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQ---VQIGTHSFTFDHVYGSTGSPSSAMFD 67
+KV RPL E G K V P + + I + FD V+ S +++
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKF-PNNVEENCISIAGKVYLFDKVFKPNAS-QEKVYN 70
Query: 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLK 127
E +V + GYN T+ AYGQT SGKT+TM D + GIIP ++N +F+ I ++
Sbjct: 71 EAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAME 130
Query: 128 DQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVIT 187
EF + VS+ EI +++RDLLD +N + + E N V
Sbjct: 131 VNLEFHIKVSYYEIYMDKIRDLLDVSKVN-------------------LSVHEDKNRVPY 171
Query: 188 LAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLG 247
+ G+TE VSS +++ +E+G +R TNMN SSRSH++F I ++Q
Sbjct: 172 VKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ---------- 221
Query: 248 DSSPNESM-NEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALG 306
E++ N++ L KL+LVDLAGSE+ +TG++G E +IN+ L ALGNVISAL
Sbjct: 222 -----ENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALA 276
Query: 307 DDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARN 366
D K H+PYRDSKLTR+LQ+SLGGN+RT ++ C SPA N ET +TL + RA+
Sbjct: 277 DGNK----THIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKT 332
Query: 367 IQNKPIVNRDPMSTEMLKMRQQLE 390
++N VN + ++ E K R + E
Sbjct: 333 VKNVVCVNEE-LTAEEWKRRYEKE 355
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 192/339 (56%), Gaps = 39/339 (11%)
Query: 48 SFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM-GTGFKDG 106
SFTFD V+ S +FD I P VD + GYN TV AYGQTG+GK+YTM GT D
Sbjct: 48 SFTFDRVF-DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDP 106
Query: 107 YQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTG 166
G+IP ++ +F+ I + E+ + VS++EI E +RDLL P N P
Sbjct: 107 DGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLP-------- 158
Query: 167 KVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSR 226
+ E N + + G E+ VSS++E+ + +G +RA +TNMN +SSR
Sbjct: 159 -----------VHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSR 207
Query: 227 SHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFK 286
SH+IF IT+ Q V G + +L LVDLAGSE+ +TG+ G +
Sbjct: 208 SHSIFVITITQKN----VETGSAK----------SGQLFLVDLAGSEKVGKTGASGQTLE 253
Query: 287 EGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISP 346
E IN+ L ALG VI+AL D K HVPYRDSKLTR+LQ+SLGGNSRT +I SP
Sbjct: 254 EAKKINKSLSALGMVINALTDGKSS----HVPYRDSKLTRILQESLGGNSRTTLIINCSP 309
Query: 347 ADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKM 385
+ N ETL+TL++ RA++I+NK VN + E+ +M
Sbjct: 310 SSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQM 348
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 200/367 (54%), Gaps = 40/367 (10%)
Query: 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTHSFTFDHVYGSTGSPSSAMFD 67
+C +KV RPL E +G K +A G+ V I + + FD V+ S+ S +++
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDK-YIAKFQGEDTVVIASKPYAFDRVFQSSTS-QEQVYN 63
Query: 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLK 127
+C +V + +GYN T+ AYGQT SGKT+TM D GIIP ++ +F+ I ++
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 128 DQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVIT 187
+ EF + VS+ EI +++RDLLD K + + E N V
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLD-------------------VSKTNLSVHEDKNRVPY 164
Query: 188 LAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLG 247
+ G TE V S E+ +++G +R TNMN SSRSH+IF I ++Q
Sbjct: 165 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ---------- 214
Query: 248 DSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGD 307
+ E+ L KL+LVDLAGSE+ +TG++G E +IN+ L ALGNVISAL +
Sbjct: 215 ----ENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 308 DKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 367
+VPYRDSK+TR+LQDSLGGN RT ++ C SP+ N ET +TL + RA+ I
Sbjct: 271 G-----STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Query: 368 QNKPIVN 374
+N VN
Sbjct: 326 KNTVCVN 332
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 236 bits (603), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 199/367 (54%), Gaps = 40/367 (10%)
Query: 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTHSFTFDHVYGSTGSPSSAMFD 67
+C +KV RPL E +G K VA G+ V I + + FD V+ S+ S +++
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDK-YVAKFQGEDTVMIASKPYAFDRVFQSSTS-QEQVYN 63
Query: 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLK 127
+C +V + +GYN T+ AYGQT SGK +TM D GIIP ++ +F+ I ++
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 128 DQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVIT 187
+ EF + VS+ EI +++RDLLD K + + E N V
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLD-------------------VSKTNLSVHEDKNRVPY 164
Query: 188 LAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLG 247
+ G TE V S E+ +++G +R TNMN SSRSH+IF I ++Q
Sbjct: 165 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ---------- 214
Query: 248 DSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGD 307
+ E+ L KL+LVDLAGSE+ +TG++G E +IN+ L ALGNVISAL +
Sbjct: 215 ----ENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 308 DKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 367
+VPYRDSK+TR+LQDSLGGN RT ++ C SP+ N ET +TL + RA+ I
Sbjct: 271 G-----STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Query: 368 QNKPIVN 374
+N VN
Sbjct: 326 KNTVCVN 332
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 236 bits (601), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 150/387 (38%), Positives = 212/387 (54%), Gaps = 63/387 (16%)
Query: 7 EDCC--VKVAVHVRPLIGDERAQGCKDCVAVV--------PGKPQVQI--GTHS------ 48
ED C +KV V VRP E+A G V VV P + +V G +
Sbjct: 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVI 65
Query: 49 --------FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG 100
F FD V+ T S S +F+ P++ GYN TVLAYG TG+GKT+TM
Sbjct: 66 KKQNKDLKFVFDAVFDET-STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM- 123
Query: 101 TGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDT 160
G D + G++ L M L+ ++ +K++ VS++E+ E++RDLL
Sbjct: 124 LGSAD--EPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL---------- 171
Query: 161 ANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNM 220
P+ +RE + + + G T S +E+ L+ G+ +R T+M
Sbjct: 172 ----------VNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDM 221
Query: 221 NNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGS 280
N SSRSHA+F I L Q K + S+N+ AK+ L+DLAGSERA +G+
Sbjct: 222 NATSSRSHAVFQIYLRQQDKTA-----------SINQNVRIAKMSLIDLAGSERASTSGA 270
Query: 281 DGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVM 340
G RF EG +INR LLALGNVI+AL D K++ + H+PYR+SKLTRLL+DSLGGN +T+M
Sbjct: 271 KGTRFVEGTNINRSLLALGNVINALADSKRKNQ--HIPYRNSKLTRLLKDSLGGNCQTIM 328
Query: 341 IACISPADINAEETLNTLKYANRARNI 367
IA +SP+ + ++T NTLKYANRA++I
Sbjct: 329 IAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 235 bits (600), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 219/409 (53%), Gaps = 70/409 (17%)
Query: 6 GEDCCVKVAVHVRPLIGDERAQGCKDCVA-------VVPGKPQVQIG--THSFTFDHVYG 56
G +KV RPL E A G + + V P+ G +FTFD VY
Sbjct: 18 GASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYD 77
Query: 57 STGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVM 116
++ S + ++DE + PL+D + QG+N TV AYGQTG+GKTYTM + + G+IP
Sbjct: 78 AS-SKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAF 136
Query: 117 NVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPI 176
+F+ I ++Q ++ + S++EI +EE+RDLL PGK +
Sbjct: 137 EHIFTHISRSQNQ-QYLVRASYLEIYQEEIRDLLSKE-----------------PGKR-L 177
Query: 177 QIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 236
+++E + + + ++KE+ + G+ +RA GST+MN SSRSHAIF IT+E
Sbjct: 178 ELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVE 237
Query: 237 QMRKLSPVSLGDSSPNESMNEEYL-CAKLHLVDLAGSERAKRTGSDGL------------ 283
S S ++++ KL+LVDLAGSER + G +
Sbjct: 238 ------------CSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGG 285
Query: 284 ------------RFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDS 331
R KE IN L ALGNVI+AL ++ H+PYRDSKLTRLLQDS
Sbjct: 286 GGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRS----THIPYRDSKLTRLLQDS 341
Query: 332 LGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMST 380
LGGN++T+M+A + PA + +E+L+TL++ANRA+NI+NKP VN DP T
Sbjct: 342 LGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPRVNEDPKDT 390
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/360 (37%), Positives = 196/360 (54%), Gaps = 40/360 (11%)
Query: 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTHSFTFDHVYGSTGSPSSAMFD 67
+C +KV RPL E +G K +A G+ V I + + FD V+ S+ S +++
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDK-YIAKFQGEDTVVIASKPYAFDRVFQSSTS-QEQVYN 63
Query: 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLK 127
+C +V + +GYN T+ AYGQT SGKT+TM D GIIP ++ +F+ I ++
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 128 DQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVIT 187
+ EF + VS+ EI +++RDLLD K + + E N V
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLD-------------------VSKTNLSVHEDKNRVPY 164
Query: 188 LAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLG 247
+ G TE V S E+ +++G +R TNMN SSRSH+IF I ++Q
Sbjct: 165 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ---------- 214
Query: 248 DSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGD 307
+ E+ L KL+LVDLAGSE+ +TG++G E +IN+ L ALGNVISAL +
Sbjct: 215 ----ENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 308 DKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 367
+VPYRDSK+TR+LQDSLGGN RT ++ C SP+ N ET +TL + RA+ I
Sbjct: 271 G-----STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 147/384 (38%), Positives = 221/384 (57%), Gaps = 54/384 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT---------HSFTFDHVYGSTGSP 61
++V V VRP ER V P + +V + T ++TFD V+G++ +
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS-TK 77
Query: 62 SSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--------TGFKDGYQTGIIP 113
++ +AP++D + GYNAT+ AYGQTG+GKT+TM +++ GIIP
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 114 LVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGK 173
++ +F K+ + TEF + VS +EI EE+ DLL+P ++ + ++ +
Sbjct: 138 RTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNP--------SSDVSERLQMFDD 187
Query: 174 PPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233
P GVI + G E++V + E+ LE+G+ R T +T MN SSRSH++F++
Sbjct: 188 P-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 241
Query: 234 TLEQMRKLSPVSLGDSSPNESMNEEYLC--AKLHLVDLAGSERAKRTGSDGLRFKEGVHI 291
T+ M++ +++ E L KL+LVDLAGSE R+G+ R +E +I
Sbjct: 242 TI-HMKE------------TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 292 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 351
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG +RT +IA ISPA +N
Sbjct: 289 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 352 EETLNTLKYANRARNIQNKPIVNR 375
EETL+TL+YA+RA+NI NKP VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 52/386 (13%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTH-------SFTFDHVYGSTGSPSS 63
VKVAV VRP E ++ K C+ + G + SF+FD+ Y S SP
Sbjct: 6 VKVAVRVRPFNSREMSRDSK-CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPED 64
Query: 64 A-------MFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVM 116
++ + ++ F+GYN + AYGQTG+GK+YTM G ++ Q GIIP +
Sbjct: 65 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM-MGKQEKDQQGIIPQLC 123
Query: 117 NVLFSKI-ETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPP 175
LFS+I +T D + + VS++EI E VRDLL+P K
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------------------NKGN 165
Query: 176 IQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 235
+++RE + ++++V+S ++ ++ G+ +R +TNMN SSRSHA+F I
Sbjct: 166 LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF 225
Query: 236 EQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGL 295
Q R D+ N + + +K+ LVDLAGSERA TG+ G R KEG +IN+ L
Sbjct: 226 TQKRH-------DAETNITTEK---VSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 275
Query: 296 LALGNVISALGD-------DKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPAD 348
LG VISAL + +KK+K+ +PYRDS LT LL+++LGGNSRT M+A +SPAD
Sbjct: 276 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 335
Query: 349 INAEETLNTLKYANRARNIQNKPIVN 374
IN +ETL+TL+YA+RA+ I+N VN
Sbjct: 336 INYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 52/386 (13%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTH-------SFTFDHVYGSTGSPSS 63
VKVAV VRP E ++ K C+ + G + SF+FD+ Y S SP
Sbjct: 22 VKVAVRVRPFNSREMSRDSK-CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPED 80
Query: 64 A-------MFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVM 116
++ + ++ F+GYN + AYGQTG+GK+YTM G ++ Q GIIP +
Sbjct: 81 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM-MGKQEKDQQGIIPQLC 139
Query: 117 NVLFSKI-ETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPP 175
LFS+I +T D + + VS++EI E VRDLL+P K
Sbjct: 140 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------------------NKGN 181
Query: 176 IQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 235
+++RE + ++++V+S ++ ++ G+ +R +TNMN SSRSHA+F I
Sbjct: 182 LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF 241
Query: 236 EQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGL 295
Q R D+ N + + +K+ LVDLAGSERA TG+ G R KEG +IN+ L
Sbjct: 242 TQKRH-------DAETNITTEK---VSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 291
Query: 296 LALGNVISALGD-------DKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPAD 348
LG VISAL + +KK+K+ +PYRDS LT LL+++LGGNSRT M+A +SPAD
Sbjct: 292 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 351
Query: 349 INAEETLNTLKYANRARNIQNKPIVN 374
IN +ETL+TL+YA+RA+ I+N VN
Sbjct: 352 INYDETLSTLRYADRAKQIRNTVSVN 377
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 52/386 (13%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTH-------SFTFDHVYGSTGSPSS 63
VKVAV VRP E ++ K C+ + G + SF+FD+ Y S SP
Sbjct: 6 VKVAVRVRPFNSREMSRDSK-CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPED 64
Query: 64 A-------MFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVM 116
++ + ++ F+GYN + AYGQTG+GK+YTM G ++ Q GIIP +
Sbjct: 65 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM-MGKQEKDQQGIIPQLC 123
Query: 117 NVLFSKI-ETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPP 175
LFS+I +T D + + VS++EI E VRDLL+P K
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------------------NKGN 165
Query: 176 IQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 235
+++RE + ++++V+S ++ ++ G+ +R +TNMN SSRSHA+F I
Sbjct: 166 LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF 225
Query: 236 EQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGL 295
Q R D+ N + + +K+ LVDLAGSERA TG+ G R KEG +IN+ L
Sbjct: 226 TQKRH-------DAETNITTEK---VSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 275
Query: 296 LALGNVISALGD-------DKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPAD 348
LG VISAL + +KK+K+ +PYRDS LT LL+++LGGNSRT M+A +SPAD
Sbjct: 276 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 335
Query: 349 INAEETLNTLKYANRARNIQNKPIVN 374
IN +ETL+TL+YA+RA+ I+N VN
Sbjct: 336 INYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 149/386 (38%), Positives = 215/386 (55%), Gaps = 52/386 (13%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTH-------SFTFDHVYGSTGSPSS 63
VKVAV VRP E ++ K C+ + G + SF+FD+ Y S SP
Sbjct: 6 VKVAVRVRPFNSREMSRDSK-CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPED 64
Query: 64 A-------MFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVM 116
++ + ++ F+GYN + AYGQTG+GK+YTM G ++ Q GIIP +
Sbjct: 65 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM-MGKQEKDQQGIIPQLC 123
Query: 117 NVLFSKI-ETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPP 175
LFS+I +T D + + VS++EI E VRDLL+P K
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------------------NKGN 165
Query: 176 IQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 235
+++RE + ++++V+S ++ ++ G+ R +TNMN SSRSHA+F I
Sbjct: 166 LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIF 225
Query: 236 EQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGL 295
Q R D+ N + + +K+ LVDLAGSERA TG+ G R KEG +IN+ L
Sbjct: 226 TQKRH-------DAETNITTEK---VSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 275
Query: 296 LALGNVISALGD-------DKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPAD 348
LG VISAL + +KK+K+ +PYRDS LT LL+++LGGNSRT M+A +SPAD
Sbjct: 276 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 335
Query: 349 INAEETLNTLKYANRARNIQNKPIVN 374
IN +ETL+TL+YA+RA+ I+N VN
Sbjct: 336 INYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 226 bits (576), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 204/382 (53%), Gaps = 57/382 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT--------------HSFTFDHVYG 56
+KV V RPL E + + + + QV + +FTFD VY
Sbjct: 6 IKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYD 65
Query: 57 STGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVM 116
T S + +F PL+D + +G+N+T+ AYGQTG+GKT+TMG G K+ + G IP
Sbjct: 66 QT-SCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMG-GNKE--EPGAIPNSF 121
Query: 117 NVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPI 176
LF I + F + S++E+ EE+RDL + +
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDL--------------------IKNNTKL 161
Query: 177 QIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 236
++E I + G + V++ E++A +++G +R +T MN+ SSRSH+IF + +E
Sbjct: 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIE 221
Query: 237 QMRKLSPVSLGDSSPNESMNEEYL-CAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGL 295
+ N+E + KL+LVDLAGSER +TG+ G EG IN L
Sbjct: 222 CSEVIE-------------NKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSL 268
Query: 296 LALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETL 355
ALG VIS L + H+PYRDSKLTRLLQDSLGGNS+T+M A ISPA N +ET+
Sbjct: 269 SALGLVISKLVEG-----ATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETM 323
Query: 356 NTLKYANRARNIQNKPIVNRDP 377
+TL+YA+RA+ I+NKP +N DP
Sbjct: 324 STLRYADRAKQIKNKPRINEDP 345
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 149/383 (38%), Positives = 215/383 (56%), Gaps = 56/383 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTHS--------FTFDHVYGSTGSPS 62
++V V VRPL ER + V VV P+ + H+ FTFD +G S
Sbjct: 25 IQVYVRVRPLNSRERCIRSAEVVDVV--GPREVVTRHTLDSKLTKKFTFDRSFGPE-SKQ 81
Query: 63 SAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM--------GTGFKDGYQTGIIPL 114
++ ++PL++ + GYN TV AYGQTG+GKT+TM + ++D GIIP
Sbjct: 82 CDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPR 141
Query: 115 VMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKP 174
++ LF ++ + + E+ + +S++E+ EE+ DLL + DT K
Sbjct: 142 ALSHLFDELRMM--EVEYTMRISYLELYNEELCDLL-----STDDTT-----------KI 183
Query: 175 PIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234
I T G + + G E+ V S ++ LE+G R T +T MN QSSRSH +F+I
Sbjct: 184 RIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIV 243
Query: 235 LEQMRKLSPVSLGDSSPNESMNEEYL-CAKLHLVDLAGSERAKRTGSD-GLRFKEGVHIN 292
+ +R+ N E+ L KL+LVDLAGSE + G++ G+R +E V+IN
Sbjct: 244 V-HIRE-----------NGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNIN 291
Query: 293 RGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAE 352
+ LL LG VI+AL D HVPYR+SKLTRLLQ+SLGG ++T +IA ISP + E
Sbjct: 292 QSLLTLGRVITALVD-----RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIE 346
Query: 353 ETLNTLKYANRARNIQNKPIVNR 375
ETL+TL+YA+RA+NIQNKP VN+
Sbjct: 347 ETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 223 bits (567), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 218/384 (56%), Gaps = 54/384 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT---------HSFTFDHVYGSTGSP 61
++V V RP ER V P + +V + T ++TFD V+G++ +
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS-TK 77
Query: 62 SSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--------TGFKDGYQTGIIP 113
++ + P++D + GYN T+ AYGQTG+GKT+TM +++ GIIP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 114 LVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGK 173
++ +F K+ + TEF + VS +EI EE+ DLL+P ++ + ++ +
Sbjct: 138 RTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNP--------SSDVSERLQMFDD 187
Query: 174 PPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233
P GVI + G E++V + E+ LE+G+ R T +T MN SSRSH++F++
Sbjct: 188 P-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 241
Query: 234 TLEQMRKLSPVSLGDSSPNESMNEEYLC--AKLHLVDLAGSERAKRTGSDGLRFKEGVHI 291
T+ M++ +++ E L KL+LVDLAGSE R+G+ R +E +I
Sbjct: 242 TI-HMKE------------TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 292 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 351
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG +RT +IA ISPA +N
Sbjct: 289 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 352 EETLNTLKYANRARNIQNKPIVNR 375
EETL+TL+YA+RA+NI NKP VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 223 bits (567), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 218/384 (56%), Gaps = 54/384 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT---------HSFTFDHVYGSTGSP 61
++V V RP ER V P + +V + T ++TFD V+G++ +
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS-TK 77
Query: 62 SSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--------TGFKDGYQTGIIP 113
++ + P++D + GYN T+ AYGQTG+GKT+TM +++ GIIP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 114 LVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGK 173
++ +F K+ + TEF + VS +EI EE+ DLL+P ++ + ++ +
Sbjct: 138 RTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNP--------SSDVSERLQMFDD 187
Query: 174 PPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233
P GVI + G E++V + E+ LE+G+ R T +T MN SSRSH++F++
Sbjct: 188 P-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 241
Query: 234 TLEQMRKLSPVSLGDSSPNESMNEEYLC--AKLHLVDLAGSERAKRTGSDGLRFKEGVHI 291
T+ M++ +++ E L KL+LVDLAGSE R+G+ R +E +I
Sbjct: 242 TI-HMKE------------TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 292 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 351
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG +RT +IA ISPA +N
Sbjct: 289 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 352 EETLNTLKYANRARNIQNKPIVNR 375
EETL+TL+YA+RA+NI NKP VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 223 bits (567), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 218/384 (56%), Gaps = 54/384 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT---------HSFTFDHVYGSTGSP 61
++V V RP ER V P + +V + T ++TFD V+G++ +
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS-TK 76
Query: 62 SSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--------TGFKDGYQTGIIP 113
++ + P++D + GYN T+ AYGQTG+GKT+TM +++ GIIP
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 114 LVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGK 173
++ +F K+ + TEF + VS +EI EE+ DLL+P ++ + ++ +
Sbjct: 137 RTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNP--------SSDVSERLQMFDD 186
Query: 174 PPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233
P GVI + G E++V + E+ LE+G+ R T +T MN SSRSH++F++
Sbjct: 187 P-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 240
Query: 234 TLEQMRKLSPVSLGDSSPNESMNEEYLC--AKLHLVDLAGSERAKRTGSDGLRFKEGVHI 291
T+ M++ +++ E L KL+LVDLAGSE R+G+ R +E +I
Sbjct: 241 TI-HMKE------------TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 287
Query: 292 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 351
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG +RT +IA ISPA +N
Sbjct: 288 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 342
Query: 352 EETLNTLKYANRARNIQNKPIVNR 375
EETL+TL+YA+RA+NI NKP VN+
Sbjct: 343 EETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 222 bits (566), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 218/384 (56%), Gaps = 54/384 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT---------HSFTFDHVYGSTGSP 61
++V V RP ER V P + +V + T ++TFD V+G++ +
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS-TK 68
Query: 62 SSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--------TGFKDGYQTGIIP 113
++ + P++D + GYN T+ AYGQTG+GKT+TM +++ GIIP
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 114 LVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGK 173
++ +F K+ + TEF + VS +EI EE+ DLL+P ++ + ++ +
Sbjct: 129 RTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNP--------SSDVSERLQMFDD 178
Query: 174 PPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233
P GVI + G E++V + E+ LE+G+ R T +T MN SSRSH++F++
Sbjct: 179 P-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 232
Query: 234 TLEQMRKLSPVSLGDSSPNESMNEEYLC--AKLHLVDLAGSERAKRTGSDGLRFKEGVHI 291
T+ M++ +++ E L KL+LVDLAGSE R+G+ R +E +I
Sbjct: 233 TI-HMKE------------TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 279
Query: 292 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 351
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG +RT +IA ISPA +N
Sbjct: 280 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 334
Query: 352 EETLNTLKYANRARNIQNKPIVNR 375
EETL+TL+YA+RA+NI NKP VN+
Sbjct: 335 EETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 222 bits (565), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 218/384 (56%), Gaps = 54/384 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT---------HSFTFDHVYGSTGSP 61
++V V RP ER V P + +V + T ++TFD V+G++ +
Sbjct: 21 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS-TK 79
Query: 62 SSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--------TGFKDGYQTGIIP 113
++ + P++D + GYN T+ AYGQTG+GKT+TM +++ GIIP
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 114 LVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGK 173
++ +F K+ + TEF + VS +EI EE+ DLL+P ++ + ++ +
Sbjct: 140 RTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNP--------SSDVSERLQMFDD 189
Query: 174 PPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233
P GVI + G E++V + E+ LE+G+ R T +T MN SSRSH++F++
Sbjct: 190 P-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 243
Query: 234 TLEQMRKLSPVSLGDSSPNESMNEEYLC--AKLHLVDLAGSERAKRTGSDGLRFKEGVHI 291
T+ M++ +++ E L KL+LVDLAGSE R+G+ R +E +I
Sbjct: 244 TI-HMKE------------TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 290
Query: 292 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 351
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG +RT +IA ISPA +N
Sbjct: 291 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 345
Query: 352 EETLNTLKYANRARNIQNKPIVNR 375
EETL+TL+YA+RA+NI NKP VN+
Sbjct: 346 EETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 218/384 (56%), Gaps = 54/384 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT---------HSFTFDHVYGSTGSP 61
++V V RP ER V P + +V + T ++TFD V+G++ +
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS-TK 77
Query: 62 SSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--------TGFKDGYQTGIIP 113
++ + P++D + GYN T+ AYGQTG+GKT+TM +++ GIIP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 114 LVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGK 173
++ +F K+ + TEF + VS +EI EE+ DLL+P ++ + ++ +
Sbjct: 138 RTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNP--------SSDVSERLQMFDD 187
Query: 174 PPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233
P GVI + G E++V + E+ LE+G+ R T +T MN SSRSH++F++
Sbjct: 188 P-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 241
Query: 234 TLEQMRKLSPVSLGDSSPNESMNEEYLC--AKLHLVDLAGSERAKRTGSDGLRFKEGVHI 291
T+ M++ +++ E L KL+LVDLAGSE R+G+ R +E +I
Sbjct: 242 TI-HMKE------------TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 292 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 351
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG +RT +IA ISPA +N
Sbjct: 289 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 352 EETLNTLKYANRARNIQNKPIVNR 375
EETL+TL+YA+RA+NI NKP VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 218/384 (56%), Gaps = 54/384 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT---------HSFTFDHVYGSTGSP 61
++V V RP ER V P + +V + T ++TFD V+G++ +
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS-TK 77
Query: 62 SSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--------TGFKDGYQTGIIP 113
++ + P++D + GYN T+ AYGQTG+GKT+TM +++ GIIP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 114 LVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGK 173
++ +F K+ + TEF + VS +EI EE+ DLL+P ++ + ++ +
Sbjct: 138 RTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNP--------SSDVSERLQMFDD 187
Query: 174 PPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233
P GVI + G E++V + E+ LE+G+ R T +T MN SSRSH++F++
Sbjct: 188 P-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 241
Query: 234 TLEQMRKLSPVSLGDSSPNESMNEEYLC--AKLHLVDLAGSERAKRTGSDGLRFKEGVHI 291
T+ M++ +++ E L KL+LVDLAGSE R+G+ R +E +I
Sbjct: 242 TI-HMKE------------TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 292 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 351
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG +RT +IA ISPA +N
Sbjct: 289 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 352 EETLNTLKYANRARNIQNKPIVNR 375
EETL+TL+YA+RA+NI NKP VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 219 bits (559), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 153/385 (39%), Positives = 210/385 (54%), Gaps = 69/385 (17%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVP-------------------GKPQVQIGTHSFTF 51
VKVAV +RP+ E K CV V G+P+V F +
Sbjct: 3 VKVAVRIRPMNRRETDLHTK-CVVDVDANKVILNPVNTNLSKGDARGQPKV------FAY 55
Query: 52 DHVYGSTGSPSSAMFD------ECIAP-LVDGLFQGYNATVLAYGQTGSGKTYTMGTGFK 104
DH + S + +C+ ++ F GYNA + AYGQTGSGK+YTM G
Sbjct: 56 DHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM-MGTA 114
Query: 105 DGYQTGIIPLVMNVLFSKIETLKDQTE---FQLHVSFIEILKEEVRDLLDPPCLNKPDTA 161
D Q G+IP + + LF + T K++ E F++ VS++EI E+VRDLLDP
Sbjct: 115 D--QPGLIPRLCSGLFER--TQKEENEEQSFKVEVSYMEIYNEKVRDLLDPK-------- 162
Query: 162 NGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMN 221
+ +++RE S + G ++++V+S K++ + + +G+ SR +TNMN
Sbjct: 163 ---------GSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMN 213
Query: 222 NQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSD 281
+SSRSHA+F ITL L V G S KL LVDLAGSERA +TG+
Sbjct: 214 EESSRSHAVFKITLTHT--LYDVKSGTSGEK--------VGKLSLVDLAGSERATKTGAA 263
Query: 282 GLRFKEGVHINRGLLALGNVISALGDDKKRK-EGVHVPYRDSKLTRLLQDSLGGNSRTVM 340
G R KEG +IN+ L LG VISAL D K + VPYRDS LT LL+DSLGGNS+T M
Sbjct: 264 GDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAM 323
Query: 341 IACISPADINAEETLNTLKYANRAR 365
+A +SPA N +ETL+TL+YA+RA+
Sbjct: 324 VATVSPAADNYDETLSTLRYADRAK 348
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 219 bits (557), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 194/355 (54%), Gaps = 59/355 (16%)
Query: 48 SFTFDHVYGSTGS------PSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGT 101
SFTFD + S + ++D +D F+GY+ + AYGQTGSGK+YTM
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM-M 155
Query: 102 GFKDGYQTGIIPLVMNVLFSKIETLKDQT---EFQLHVSFIEILKEEVRDLLDPPCLNKP 158
G D Q G+IP LF +I + +D+T + + VS+ E+ E VRDLL P
Sbjct: 156 GTPD--QPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAP------ 207
Query: 159 DTANGHTGKVTVPGKPP--IQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATG 216
VP KPP +++RE+ + TEV V L+E+ + G SR
Sbjct: 208 ----------VVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVA 257
Query: 217 STNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAK 276
ST MN+ SSRSHA+FTI L+Q+ + D++ S ++ LVDLAGSERAK
Sbjct: 258 STKMNDTSSRSHAVFTIMLKQIHH--DLETDDTTERSS--------RIRLVDLAGSERAK 307
Query: 277 RTGSDGLRFKEGVHINRGLLALGNVISALGDDKK--------------RKEGVH---VPY 319
T + G R +EG +IN+ L LG VI+AL D K R G VPY
Sbjct: 308 STEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPY 367
Query: 320 RDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 374
RDS LT LL+DSLGGNS+T MIACISP D +ETL+TL+YA++A+ I+ + +VN
Sbjct: 368 RDSVLTWLLKDSLGGNSKTAMIACISPTDY--DETLSTLRYADQAKRIRTRAVVN 420
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/380 (37%), Positives = 215/380 (56%), Gaps = 54/380 (14%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT---------HSFTFDHVYGSTGSP 61
++V V RP ER V P + +V + T ++TFD V+G++ +
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS-TK 62
Query: 62 SSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--------TGFKDGYQTGIIP 113
++ + P++D + GYN T+ AYGQTG+GKT+TM +++ GIIP
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 114 LVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGK 173
++ +F K+ + TEF + VS +EI EE+ DLL+P ++ + ++ +
Sbjct: 123 RTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNP--------SSDVSERLQMFDD 172
Query: 174 PPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233
P GVI + G E++V + E+ LE+G+ R T +T MN SSRSH++F++
Sbjct: 173 P-----RNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 226
Query: 234 TLEQMRKLSPVSLGDSSPNESMNEEYLC--AKLHLVDLAGSERAKRTGSDGLRFKEGVHI 291
T+ M++ +++ E L KL+LVDLAGSE R+G+ R +E +I
Sbjct: 227 TI-HMKE------------TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 273
Query: 292 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 351
N+ LL LG VI+AL + HVPYR+SKLTR+LQDSLGG +RT +IA ISPA +N
Sbjct: 274 NQSLLTLGRVITALVERTP-----HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 328
Query: 352 EETLNTLKYANRARNIQNKP 371
EETL+TL+YA+RA+NI NKP
Sbjct: 329 EETLSTLEYAHRAKNILNKP 348
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/374 (39%), Positives = 204/374 (54%), Gaps = 44/374 (11%)
Query: 6 GEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI-----GTHSFTFDHVYGSTGS 60
E+ V V V VRPL E + G A V K + G+ SF FD V+ +
Sbjct: 1 AEEGAVAVCVRVRPLNSREESLGE---TAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNET 57
Query: 61 PSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLF 120
+ +++E AP++D QGYN T+ AYGQT SGKTYTM G +D G+IP ++ +F
Sbjct: 58 TKN-VYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM-MGSED--HLGVIPRAIHDIF 113
Query: 121 SKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRE 180
KI+ D+ EF L VS++EI E + DLL C + P+ IRE
Sbjct: 114 QKIKKFPDR-EFLLRVSYMEIYNETITDLL---CGTQK--------------MKPLIIRE 155
Query: 181 TSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 240
N + +A TE V + + + +G SR G T MN +SSRSH IF + LE K
Sbjct: 156 DVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREK 215
Query: 241 LSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGN 300
P + S + L+LVDLAGSERA +TG+ G+R KEG +INR L LG
Sbjct: 216 GEPSNCEGSVK---------VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQ 266
Query: 301 VISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKY 360
VI L D + G + YRDSKLTR+LQ+SLGGN++T +I I+P ++ +ETL L++
Sbjct: 267 VIKKLSDGQV---GGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQF 321
Query: 361 ANRARNIQNKPIVN 374
A+ A+ ++N P VN
Sbjct: 322 ASTAKYMKNTPYVN 335
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/360 (33%), Positives = 190/360 (52%), Gaps = 44/360 (12%)
Query: 51 FDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTG 110
+D V+ + D LV GYN + AYGQTGSGKT+T+ + G
Sbjct: 51 YDRVFDGNATQDDVFED--TKYLVQSAVDGYNVCIFAYGQTGSGKTFTI---YGADSNPG 105
Query: 111 IIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTV 170
+ P M+ LF ++ ++ F L +E+ ++ + DLL P
Sbjct: 106 LTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQ---------------- 149
Query: 171 PGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAI 230
+ + I++ S G++++ T VS+S+ +E+ +++GS R T T MN QSSRSH I
Sbjct: 150 AKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLI 209
Query: 231 FTITLEQMR-KLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGV 289
++ +E + ++ G KL VDLAGSER K++GS G + KE
Sbjct: 210 VSVIIESTNLQTQAIARG---------------KLSFVDLAGSERVKKSGSAGNQLKEAQ 254
Query: 290 HINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADI 349
IN+ L ALG+VISAL + H+PYR+ KLT L+ DSLGGN++T+M ISPA+
Sbjct: 255 SINKSLSALGDVISALSSGNQ-----HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAES 309
Query: 350 NAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQ 409
N +ET N+L YA+R R+I N P +++ S E+ ++++ + + + + +G +E+Q
Sbjct: 310 NLDETHNSLTYASRVRSIVNDP--SKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQ 367
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 194/379 (51%), Gaps = 52/379 (13%)
Query: 6 GEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG-------THSFTFDHVYGST 58
G V+VAV +RP + CV + ++I T + FD YG
Sbjct: 18 GPPARVRVAVRLRPFVDGTAGASDPPCVRGM-DSCSLEIANWRNHQETLKYQFDAFYGER 76
Query: 59 GSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIP-LVMN 117
S ++ + P++ L +G NA+VLAYG TG+GKT+TM Q G+IP +M+
Sbjct: 77 -STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM---LGSPEQPGVIPRALMD 132
Query: 118 VLFSKIETLKDQTEFQLHV--SFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPP 175
+L E + + L V S++EI +E+V DLLDP A+G
Sbjct: 133 LLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDP--------ASGD----------- 173
Query: 176 IQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 235
+ IRE G I + G ++ +SS + S +R G+T +N +SSRSHA+ + +
Sbjct: 174 LVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKV 233
Query: 236 EQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGL 295
+Q +L+P + KL+L+DLAGSE +RTG+ GLR KE IN L
Sbjct: 234 DQRERLAPFRQRE-------------GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSL 280
Query: 296 LALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETL 355
LG V+ AL R VPYRDSKLTRLLQDSLGG++ +++IA I+P +T+
Sbjct: 281 FVLGKVVDALNQGLPR-----VPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTV 335
Query: 356 NTLKYANRARNIQNKPIVN 374
+ L +A R++ + N+P N
Sbjct: 336 SALNFAARSKEVINRPFTN 354
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/394 (31%), Positives = 195/394 (49%), Gaps = 46/394 (11%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPG----KPQVQIGTHSFTFDHVYGSTGSPSSAMF 66
++V +RPL E ++ K + V P +D V+ S
Sbjct: 15 IRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQDDIF- 73
Query: 67 DECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETL 126
E LV GYN + AYGQTGSGKT+T+ + G+ P LF+ ++
Sbjct: 74 -EDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI---YGHESNPGLTPRATKELFNILKRD 129
Query: 127 KDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVI 186
+ F L +E+ ++ + DLL P + ++I++ S G++
Sbjct: 130 SKRFSFSLKAYMVELYQDTLVDLLLPKSARRL----------------KLEIKKDSKGMV 173
Query: 187 TLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSL 246
+ T + +S+L+E+ LE+GS R TNMN +SSRSH I ++ +E +
Sbjct: 174 FVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESI-------- 225
Query: 247 GDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALG 306
+ + KL VDLAGSER K++GS G + KE IN+ L ALG+VI AL
Sbjct: 226 ------DLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALS 279
Query: 307 DDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARN 366
+ H+PYR+ KLT L+ DSLGGN++T+M +SPA+ N +ET N+L YA+R R
Sbjct: 280 SGNQ-----HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRT 334
Query: 367 IQNKPIVNRDPMSTEMLKMRQQLEFLQAELCARG 400
I N P ++ S EM+++++ + + + + +G
Sbjct: 335 IVNDP--SKHISSKEMVRLKKLVAYWKEQAGKKG 366
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 178/337 (52%), Gaps = 58/337 (17%)
Query: 38 GKPQVQIGTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTY 97
GKP SF D V+ S +F E + LV G+N + AYGQTG+GKTY
Sbjct: 45 GKPV------SFELDKVFSPQASQQD-VFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTY 96
Query: 98 TM-GTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLN 156
TM GT GI + +LFS+++ E+ + VS EI E +RDLL
Sbjct: 97 TMEGTA----ENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLL------ 146
Query: 157 KPDTANGHTGKVTVPGKPP-----IQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSL 211
GK P I++ +G + + G TE V S+ ++ E G
Sbjct: 147 ---------------GKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHT 191
Query: 212 SRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAG 271
+R T TN+N SSRSHA+ +T+ + D S KL+LVDLAG
Sbjct: 192 NRTTEFTNLNEHSSRSHALLIVTVRGV---------DCSTGLRTT-----GKLNLVDLAG 237
Query: 272 SERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDS 331
SER ++G++G R +E HIN+ L ALG+VI+AL + ++G HVP+R+SKLT LLQDS
Sbjct: 238 SERVGKSGAEGSRLREAQHINKSLSALGDVIAAL----RSRQG-HVPFRNSKLTYLLQDS 292
Query: 332 LGGNSRTVMIACISPADINAEETLNTLKYANRARNIQ 368
L G+S+T+M+ +SP + N ETL +LK+A R R+++
Sbjct: 293 LSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 171/319 (53%), Gaps = 41/319 (12%)
Query: 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQ 108
F FD ++ S + +F+E ++ L+ G N V AYGQTGSGKT+TM
Sbjct: 432 FLFDKIFEREQS-NDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP-----T 484
Query: 109 TGIIPLVMNVLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGK 167
G+IPL + +F+ IE LK++ + + FIEI E + DLL+P P+T
Sbjct: 485 NGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKI--DPNT------- 535
Query: 168 VTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRS 227
K I+ + + G T+ + + + S ++ L Q + R+T +T N+ SSRS
Sbjct: 536 -----KYEIKHDDIA-GKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRS 589
Query: 228 HAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKE 287
H+IF I L+ S+ +E L+L+DLAGSER + ++G R KE
Sbjct: 590 HSIFIIDLQGYN--------------SLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKE 635
Query: 288 GVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPA 347
IN+ L LG+VI +L K+G HVPYR+SKLT LL+ SLGGNS+T+M ISP
Sbjct: 636 TQAINKSLSCLGDVIHSL----NLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPL 691
Query: 348 DINAEETLNTLKYANRARN 366
+ ET+N+L++A + N
Sbjct: 692 TKDLNETINSLRFATKVNN 710
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 182/380 (47%), Gaps = 73/380 (19%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGK-------PQVQIG------THSFTFDHVYGS 57
+ V V RPL E A+ D ++V P K P++++ +F FD +
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 131
Query: 58 TGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG---TGFKDGYQTGIIPL 114
T S + ++ PLV +F+G AT AYGQTGSGKT+TMG +G GI +
Sbjct: 132 TAS-NEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAM 190
Query: 115 VMNVLFSKIETLKDQTEF-----QLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVT 169
+F LK+Q + +++V+F EI +V DLL+
Sbjct: 191 ASRDVF----LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK----------------- 229
Query: 170 VPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHA 229
K +++ E S + + G E V+ ++ + GS R +G T N+ SSRSHA
Sbjct: 230 ---KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHA 286
Query: 230 IFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGS-DGLRFKEG 288
F I L +L K LVDLAG+ER T S D EG
Sbjct: 287 CFQILLRTKGRLH-------------------GKFSLVDLAGNERGADTSSADRQTRMEG 327
Query: 289 VHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDS-LGGNSRTVMIACISPA 347
IN+ LLAL I ALG +K H P+R+SKLT++L+DS +G NSRT MIA ISP
Sbjct: 328 AEINKSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPG 382
Query: 348 DINAEETLNTLKYANRARNI 367
+ E TLNTL+YA+R + +
Sbjct: 383 ISSCEYTLNTLRYADRVKEL 402
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 174/348 (50%), Gaps = 55/348 (15%)
Query: 30 KDCVAVVPGKPQVQIGTH----SFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATV 85
KD V V K +V + + +F FD+ + + +P+ ++ PLV+ +F+ AT
Sbjct: 118 KDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDS-APNEMVYRFTARPLVETIFERGMATC 176
Query: 86 LAYGQTGSGKTYTMGTGFKDGYQ---TGIIPLVMNVLFSKIETLK-DQTEFQLHVSFIEI 141
AYGQTGSGKT+TMG F Q GI L +F ++ + E Q++ +F EI
Sbjct: 177 FAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEI 236
Query: 142 LKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKE 201
+V DLL+ K +++ E + + G E V +++
Sbjct: 237 YSGKVFDLLNR--------------------KTKLRVLEDGKQQVQVVGLQEREVKCVED 276
Query: 202 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC 261
+ ++ G+ R +G T+ N SSRSHA+F I L + KL
Sbjct: 277 VLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLH------------------- 317
Query: 262 AKLHLVDLAGSERAKRTGSDGLRFK-EGVHINRGLLALGNVISALGDDKKRKEGVHVPYR 320
K L+DLAG+ER T S + + EG IN+ LLAL I ALG +K H P+R
Sbjct: 318 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKP-----HTPFR 372
Query: 321 DSKLTRLLQDS-LGGNSRTVMIACISPADINAEETLNTLKYANRARNI 367
SKLT++L+DS +G NSRT MIA ISP + E TLNTL+YANR + +
Sbjct: 373 ASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 163 bits (413), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 161/320 (50%), Gaps = 37/320 (11%)
Query: 48 SFTFDHVYGSTGSPSSAMFDECIAP-LVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDG 106
SF D G S + E +A +V GYN T++ YGQTG+GKTYTM ++
Sbjct: 73 SFKLD---GVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENY 129
Query: 107 YQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTG 166
GI+P + +F IE + + VS++EI E + DLL T
Sbjct: 130 KHRGILPRALQQVFRMIEE-RPTHAITVRVSYLEIYNESLFDLLS-------------TL 175
Query: 167 KVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSR 226
P P+ I E GV S ++ S ++ + L +G +R S MN SSR
Sbjct: 176 PYVGPSVTPMTIVENPQGVFIKGLSVHLT-SQEEDAFSLLFEGETNRIIASHTMNKNSSR 234
Query: 227 SHAIFTITLE-QMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRF 285
SH IFTI LE R LS E+Y+ +K++LVDLAGSER ++GS+G
Sbjct: 235 SHCIFTIYLEAHSRTLS-------------EEKYITSKINLVDLAGSERLGKSGSEGQVL 281
Query: 286 KEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACIS 345
KE +IN+ L L I ALGD K+ H+P+R KLT L+DSLGGN V++ I
Sbjct: 282 KEATYINKSLSFLEQAIIALGDQKRD----HIPFRQCKLTHALKDSLGGNCNMVLVTNIY 337
Query: 346 PADINAEETLNTLKYANRAR 365
EETL++L++A+R +
Sbjct: 338 GEAAQLEETLSSLRFASRMK 357
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 162 bits (411), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 182/380 (47%), Gaps = 73/380 (19%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGK-------PQVQIG------THSFTFDHVYGS 57
+ V V RPL E A+ D ++V P K P++++ +F FD +
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 59
Query: 58 TGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG---TGFKDGYQTGIIPL 114
T S + ++ PLV +F+G AT AYGQTGSGKT+TMG +G GI +
Sbjct: 60 TAS-NEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAM 118
Query: 115 VMNVLFSKIETLKDQTEF-----QLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVT 169
+F LK+Q + +++V+F EI +V DLL+
Sbjct: 119 ASRDVF----LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK----------------- 157
Query: 170 VPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHA 229
K +++ E S + + G E V+ ++ + GS R +G T N+ SSRSHA
Sbjct: 158 ---KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHA 214
Query: 230 IFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGS-DGLRFKEG 288
F I L +L K LVDLAG+ER T S D EG
Sbjct: 215 CFQILLRTKGRLH-------------------GKFSLVDLAGNERGADTSSADRQTRMEG 255
Query: 289 VHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDS-LGGNSRTVMIACISPA 347
IN+ LLAL I ALG +K H P+R+SKLT++L+DS +G NSRT MIA ISP
Sbjct: 256 AEINKSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPG 310
Query: 348 DINAEETLNTLKYANRARNI 367
+ E TLNTL+YA+R + +
Sbjct: 311 ISSCEYTLNTLRYADRVKEL 330
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 171/322 (53%), Gaps = 37/322 (11%)
Query: 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKD 105
H F FD ++ + + +F E + LV GYN + AYGQTGSGKT+TM
Sbjct: 107 VHEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTM---LNP 161
Query: 106 GYQTGIIPLVMNVLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164
G GIIP ++ +F+ I LK + +++++ FIEI E + DLL NK DT+ G
Sbjct: 162 G--DGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGL 219
Query: 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQS 224
++ + T+ T V + S + + L++ + R+T ST N S
Sbjct: 220 KHEIR---------HDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHS 270
Query: 225 SRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLR 284
SRSH+IF I L S + + + L+LVDLAGSER + G R
Sbjct: 271 SRSHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDR 316
Query: 285 FKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIA 342
+E +IN+ L ALG+VI ALG D KR H+P+R+SKLT LLQ SL G+S+T+M
Sbjct: 317 LRETQNINKSLSALGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 372
Query: 343 CISPADINAEETLNTLKYANRA 364
ISP+ + ETLN+L++A++
Sbjct: 373 NISPSSSHINETLNSLRFASKV 394
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 162/325 (49%), Gaps = 56/325 (17%)
Query: 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGT---GFKD 105
F FDH + +T S M+ I PLVD L +G+ T LAYGQTG+GK+Y+MG G
Sbjct: 63 FHFDHAFPATIS-QDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEIL 121
Query: 106 GYQTGIIPLVMNVLFSKIETLKDQTE--FQLHVSFIEILKEEVRDLLDPPCLNKPDTANG 163
GI+P + +F ++ ++ + Q++ SFIEI E+ DLL
Sbjct: 122 PEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG------------ 169
Query: 164 HTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQ 223
+ P P + R T + + S ++ LE G+ +R TNMN+
Sbjct: 170 -----STPHMPMVAAR--------CQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSN 216
Query: 224 SSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGL 283
SSRSHAI TI ++ S ++++VDLAGSE +RTG +G+
Sbjct: 217 SSRSHAIVTIHVKSKTHHS--------------------RMNIVDLAGSEGVRRTGHEGV 256
Query: 284 RFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIAC 343
+EGV+IN GLL++ V+ ++ +PYRDS LT +LQ SL S +AC
Sbjct: 257 ARQEGVNINLGLLSINKVVMSMAAGHTV-----IPYRDSVLTTVLQASLTAQSYLTFLAC 311
Query: 344 ISPADINAEETLNTLKYANRARNIQ 368
ISP + ETL+TL++ A+ ++
Sbjct: 312 ISPHQCDLSETLSTLRFGTSAKKLR 336
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 160/322 (49%), Gaps = 56/322 (17%)
Query: 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGT---GFKD 105
F FDH + +T S M+ I PLVD L +G+ T LAYGQTG+GK+Y+MG G
Sbjct: 63 FHFDHAFPATIS-QDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEIL 121
Query: 106 GYQTGIIPLVMNVLFSKIETLKDQTE--FQLHVSFIEILKEEVRDLLDPPCLNKPDTANG 163
GI+P + +F ++ ++ + Q++ SFIEI E+ DLL
Sbjct: 122 PEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG------------ 169
Query: 164 HTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQ 223
+ P P + R T + + S ++ LE G+ +R TNMN+
Sbjct: 170 -----STPHMPMVAAR--------CQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSN 216
Query: 224 SSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGL 283
SSRSHAI TI ++ S ++++VDLAGSE +RTG +G+
Sbjct: 217 SSRSHAIVTIHVKSKTHHS--------------------RMNIVDLAGSEGVRRTGHEGV 256
Query: 284 RFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIAC 343
+EGV+IN GLL++ V+ ++ +PYRDS LT +LQ SL S +AC
Sbjct: 257 ARQEGVNINLGLLSINKVVMSMAAGHTV-----IPYRDSVLTTVLQASLTAQSYLTFLAC 311
Query: 344 ISPADINAEETLNTLKYANRAR 365
ISP + ETL+TL++ A+
Sbjct: 312 ISPHQCDLSETLSTLRFGTSAK 333
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/376 (32%), Positives = 181/376 (48%), Gaps = 65/376 (17%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAVVPGK-------PQVQIG------THSFTFDHVYGS 57
+ V V RPL E A+ D +++ P K P++++ +F FD +
Sbjct: 53 ICVCVRKRPLNKQELAKKEIDVISI-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 111
Query: 58 TGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMG---TGFKDGYQTGIIPL 114
T S + ++ PLV +F+G AT AYGQTGSGKT+TMG +G GI +
Sbjct: 112 TAS-NEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAM 170
Query: 115 VM-NVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGK 173
+V K + + +++V+F EI ++ DLL+ K
Sbjct: 171 ASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK--------------------K 210
Query: 174 PPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233
+++ E + + G E V+S ++ ++ GS R +G T N+ SSRSHA F I
Sbjct: 211 AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQI 270
Query: 234 TLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGS-DGLRFKEGVHIN 292
L ++ K LVDLAG+ER T S D EG IN
Sbjct: 271 ILRAKGRMH-------------------GKFSLVDLAGNERGADTSSADRQTRMEGAEIN 311
Query: 293 RGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDS-LGGNSRTVMIACISPADINA 351
+ LLAL I ALG +K H P+R+SKLT++L+DS +G NSRT MIA ISP +
Sbjct: 312 KSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSC 366
Query: 352 EETLNTLKYANRARNI 367
E TLNTL+YA+R + +
Sbjct: 367 EYTLNTLRYADRVKEL 382
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 163/327 (49%), Gaps = 45/327 (13%)
Query: 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM-GTGFKD 105
H F+FD V+ GS +F+E IA LV GY + AYGQTGSGKT+TM G D
Sbjct: 83 HDFSFDRVF-PPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGD 140
Query: 106 GYQTGIIPLVMNVLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164
G+IP + LFS + L Q + S++EI E VRDLL T G
Sbjct: 141 PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLL------ATGTRKGQ 194
Query: 165 TGKVTVPGKPPIQIRETSNGV--ITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNN 222
G+ +IR G +T+ + V VS KE+ A L +RA T N
Sbjct: 195 GGEC--------EIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNE 246
Query: 223 QSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC-AKLHLVDLAGSERAKRTGSD 281
+SSRSH++F + + E + C A L LVDLAGSER +
Sbjct: 247 RSSRSHSVFQLQIS---------------GEHSSRGLQCGAPLSLVDLAGSERLDPGLAL 291
Query: 282 GL----RFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSR 337
G R +E IN L LG VI AL + + HVPYR+SKLT LLQ+SLGG+++
Sbjct: 292 GPGERERLRETQAINSSLSTLGLVIMALSNKES-----HVPYRNSKLTYLLQNSLGGSAK 346
Query: 338 TVMIACISPADINAEETLNTLKYANRA 364
+M ISP + N E+LN+L++A++
Sbjct: 347 MLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 172/322 (53%), Gaps = 37/322 (11%)
Query: 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKD 105
H F FD ++ + + +F E + LV GYN + AYGQTGSGKT+TM
Sbjct: 62 VHEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---LNP 116
Query: 106 GYQTGIIPLVMNVLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164
G GIIP ++ +F+ I LK + +++++ FIEI E + DLL NK DT+ G
Sbjct: 117 G--DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGL 174
Query: 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQS 224
++ +ET IT S ++ + E+ L++ + R+T ST N S
Sbjct: 175 KHEIR-------HDQETKTTTITNVTSCKLESEEMVEI--ILKKANKLRSTASTASNEHS 225
Query: 225 SRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLR 284
SRSH+IF I L S + + + L+LVDLAGSER + G R
Sbjct: 226 SRSHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDR 271
Query: 285 FKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIA 342
+E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ SL G+S+T+M
Sbjct: 272 LRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 327
Query: 343 CISPADINAEETLNTLKYANRA 364
ISP+ + ETLN+L++A++
Sbjct: 328 NISPSSSHINETLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 172/322 (53%), Gaps = 37/322 (11%)
Query: 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKD 105
H F FD ++ + + +F E + LV GYN + AYGQTGSGKT+TM
Sbjct: 50 VHEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---LNP 104
Query: 106 GYQTGIIPLVMNVLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164
G GIIP ++ +F+ I LK + +++++ FIEI E + DLL NK DT+ G
Sbjct: 105 G--DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGL 162
Query: 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQS 224
++ +ET IT S ++ + E+ L++ + R+T ST N S
Sbjct: 163 KHEIR-------HDQETKTTTITNVTSCKLESEEMVEI--ILKKANKLRSTASTASNEHS 213
Query: 225 SRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLR 284
SRSH+IF I L S + + + L+LVDLAGSER + G R
Sbjct: 214 SRSHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDR 259
Query: 285 FKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIA 342
+E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ SL G+S+T+M
Sbjct: 260 LRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 315
Query: 343 CISPADINAEETLNTLKYANRA 364
ISP+ + ETLN+L++A++
Sbjct: 316 NISPSSSHINETLNSLRFASKV 337
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/355 (34%), Positives = 177/355 (49%), Gaps = 43/355 (12%)
Query: 15 VHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTHSFTFDHVYGSTGSPSSAMFDECIAPLV 74
+ V+P D QG + + G QV F FD ++ + + +F E + L+
Sbjct: 50 IKVQPFDDDNGDQG----MTINRGNSQVI----PFKFDKIFDQQET-NDEIFKE-VGQLI 99
Query: 75 DGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQT-EFQ 133
GYN + AYGQTGSGKTYTM G GI+P +N +FS I+ L + ++
Sbjct: 100 QSSLDGYNVCIFAYGQTGSGKTYTM---LNPG--DGIVPATINHIFSWIDKLAARGWSYK 154
Query: 134 LHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTE 193
+ FIEI E + DLL ++ + K + ++ +N T
Sbjct: 155 VSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITN-------ITT 207
Query: 194 VSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNE 253
+ S + L++ + R+T ST N SSRSH+IF I LE NE
Sbjct: 208 CVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLE-------------GKNE 254
Query: 254 SMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALG--DDKKR 311
E+ L+LVDLAGSER + G R +E IN+ L LG+VI AL D +KR
Sbjct: 255 GTGEKSQ-GILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKR 313
Query: 312 KEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARN 366
H+P+R+SKLT LLQ SL G+S+T+M ISPA ++ ET+N+L++A++ N
Sbjct: 314 ----HIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNN 364
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 171/322 (53%), Gaps = 37/322 (11%)
Query: 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKD 105
H F FD ++ + + +F E + LV GYN + AYGQTGSGKT+TM
Sbjct: 51 VHEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---LNP 105
Query: 106 GYQTGIIPLVMNVLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164
G GIIP ++ +F+ I LK + +++++ FIEI E + DLL NK DT+ G
Sbjct: 106 G--DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGL 163
Query: 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQS 224
++ +ET IT S ++ + E+ L++ + R+T ST N S
Sbjct: 164 KHEIR-------HDQETKTTTITNVTSCKLESEEMVEI--ILKKANKLRSTASTASNEHS 214
Query: 225 SRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLR 284
SRSH+IF I L S + + + L+LVDLAGS R + G R
Sbjct: 215 SRSHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDR 260
Query: 285 FKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIA 342
+E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ SL G+S+T+M
Sbjct: 261 LRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 316
Query: 343 CISPADINAEETLNTLKYANRA 364
ISP+ + ETLN+L++A++
Sbjct: 317 NISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 171/322 (53%), Gaps = 37/322 (11%)
Query: 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKD 105
H F FD ++ + + +F E + LV GYN + AYGQTGSGKT+TM
Sbjct: 51 VHEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---LNP 105
Query: 106 GYQTGIIPLVMNVLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164
G GIIP ++ +F+ I LK + +++++ FIEI E + DLL NK DT+ G
Sbjct: 106 G--DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGL 163
Query: 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQS 224
++ +ET IT S ++ + E+ L++ + R+T ST N S
Sbjct: 164 KHEIR-------HDQETKTTTITNVTSCKLESEEMVEI--ILKKANKLRSTASTASNEHS 214
Query: 225 SRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLR 284
SRSH+IF I L S + + + L+LVDLAGSER + G R
Sbjct: 215 SRSHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDR 260
Query: 285 FKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIA 342
+E +I + L LG+VI ALG D KR H+P+R+SKLT LLQ SL G+S+T+M
Sbjct: 261 LRETQNIKKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 316
Query: 343 CISPADINAEETLNTLKYANRA 364
ISP+ + ETLN+L++A++
Sbjct: 317 NISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 171/322 (53%), Gaps = 37/322 (11%)
Query: 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKD 105
H F FD ++ + + +F E + LV GYN + AYGQTGSGKT+TM
Sbjct: 51 VHEFKFDKIFDQQDT-NVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---LNP 105
Query: 106 GYQTGIIPLVMNVLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164
G GIIP ++ +F+ I LK + +++++ FIEI E + DLL NK DT+ G
Sbjct: 106 G--DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGL 163
Query: 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQS 224
++ +ET IT S ++ + E+ L++ + R+T ST N S
Sbjct: 164 KHEIR-------HDQETKTTTITNVTSCKLESEEMVEI--ILKKANKLRSTASTASNEHS 214
Query: 225 SRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLR 284
S SH+IF I L S + + + L+LVDLAGSER + G R
Sbjct: 215 SASHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDR 260
Query: 285 FKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIA 342
+E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ SL G+S+T+M
Sbjct: 261 LRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQYSLTGDSKTLMFV 316
Query: 343 CISPADINAEETLNTLKYANRA 364
ISP+ + ETLN+L++A++
Sbjct: 317 NISPSSSHINETLNSLRFASKV 338
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 175/367 (47%), Gaps = 67/367 (18%)
Query: 11 VKVAVHVRPLIGDERAQGCKDC-----------VAVVPGKPQVQIGTHSFTFDHVYGSTG 59
++V +RP + E + C C + + + + ++G F+FD V+
Sbjct: 69 IRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 126
Query: 60 SPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGY--QTGIIPLVMN 117
S S E ++PL+ GYN + AYGQTGSGKTYTM DG G+IP ++
Sbjct: 127 SQSDIF--EMVSPLIQSALDGYNICIFAYGQTGSGKTYTM-----DGVPESVGVIPRTVD 179
Query: 118 VLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPI 176
+LF I ++ E+++ +F+EI E + DLL + +
Sbjct: 180 LLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------------QKDM 220
Query: 177 QIRETSNGV--ITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234
+IR N I ++ TE +V + + ++RAT ST N +SSRSHA+ +
Sbjct: 221 EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLE 280
Query: 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRG 294
L +G + + E ++LVDLAGSE K + R E +INR
Sbjct: 281 L----------IGRHAEKQ----EISVGSINLVDLAGSESPKTST----RMTETKNINRS 322
Query: 295 LLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEET 354
L L NVI AL + H+PYR+SKLT LL SLGGNS+T+M +SP +E+
Sbjct: 323 LSELTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQES 377
Query: 355 LNTLKYA 361
+ +L++A
Sbjct: 378 VKSLRFA 384
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 175/367 (47%), Gaps = 67/367 (18%)
Query: 11 VKVAVHVRPLIGDERAQGCKDC-----------VAVVPGKPQVQIGTHSFTFDHVYGSTG 59
++V +RP + E + C C + + + + ++G F+FD V+
Sbjct: 61 IRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 118
Query: 60 SPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGY--QTGIIPLVMN 117
S S E ++PL+ GYN + AYGQTGSGKTYTM DG G+IP ++
Sbjct: 119 SQSDIF--EMVSPLIQSALDGYNICIFAYGQTGSGKTYTM-----DGVPESVGVIPRTVD 171
Query: 118 VLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPI 176
+LF I ++ E+++ +F+EI E + DLL + +
Sbjct: 172 LLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------------QKDM 212
Query: 177 QIRETSNGV--ITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234
+IR N I ++ TE +V + + ++RAT ST N +SSRSHA+ +
Sbjct: 213 EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLE 272
Query: 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRG 294
L +G + + E ++LVDLAGSE K + R E +INR
Sbjct: 273 L----------IGRHAEKQ----EISVGSINLVDLAGSESPKTST----RMTETKNINRS 314
Query: 295 LLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEET 354
L L NVI AL + H+PYR+SKLT LL SLGGNS+T+M +SP +E+
Sbjct: 315 LSELTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQES 369
Query: 355 LNTLKYA 361
+ +L++A
Sbjct: 370 VKSLRFA 376
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 175/367 (47%), Gaps = 67/367 (18%)
Query: 11 VKVAVHVRPLIGDERAQGCKDC-----------VAVVPGKPQVQIGTHSFTFDHVYGSTG 59
++V +RP + E + C C + + + + ++G F+FD V+
Sbjct: 55 IRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 112
Query: 60 SPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGY--QTGIIPLVMN 117
S S E ++PL+ GYN + AYGQTGSGKTYTM DG G+IP ++
Sbjct: 113 SQSDIF--EMVSPLIQSALDGYNICIFAYGQTGSGKTYTM-----DGVPESVGVIPRTVD 165
Query: 118 VLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPI 176
+LF I ++ E+++ +F+EI E + DLL + +
Sbjct: 166 LLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------------QKDM 206
Query: 177 QIRETSNGV--ITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234
+IR N I ++ TE +V + + ++RAT ST N +SSRSHA+ +
Sbjct: 207 EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLE 266
Query: 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRG 294
L +G + + E ++LVDLAGSE K + R E +INR
Sbjct: 267 L----------IGRHAEKQ----EISVGSINLVDLAGSESPKTST----RMTETKNINRS 308
Query: 295 LLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEET 354
L L NVI AL + H+PYR+SKLT LL SLGGNS+T+M +SP +E+
Sbjct: 309 LSELTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQES 363
Query: 355 LNTLKYA 361
+ +L++A
Sbjct: 364 VKSLRFA 370
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 150 bits (378), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 190/367 (51%), Gaps = 45/367 (12%)
Query: 11 VKVAVHVRPLIGDE----------RAQGCKDCVAVVPGKPQVQIGTHSFTFDHVYGSTGS 60
++V VRP + +E + K ++ + + +I +++F FD ++ + +
Sbjct: 7 IRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHT 66
Query: 61 PSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLF 120
+ +F+E I LV GYN + AYGQTGSGKTYTM G+IP+ ++ +F
Sbjct: 67 -NKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA-----GDGMIPMTLSHIF 119
Query: 121 SKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIR 179
LK++ +++ +IEI E + DLL + ++ + ++ K I+
Sbjct: 120 KWTANLKERGWNYEMECEYIEIYNETILDLL------RDFKSHDNIDEILDSQKHDIRHD 173
Query: 180 ETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 239
G + T + ++S ++ L++ S R+T +T N +SSRSH++F + + R
Sbjct: 174 HEKQGTY-ITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHING-R 231
Query: 240 KLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALG 299
L G++S KL+LVDLAGSER + G R +E +IN+ L LG
Sbjct: 232 NLHT---GETSQ----------GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLG 278
Query: 300 NVISALG--DDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNT 357
+VI AL D KR ++P+R+SKLT LLQ SL G+S+T+M I P + ETLN+
Sbjct: 279 DVIYALNTPDAGKR----YIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNS 334
Query: 358 LKYANRA 364
L++A++
Sbjct: 335 LRFASKV 341
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 176/367 (47%), Gaps = 67/367 (18%)
Query: 11 VKVAVHVRPLIGDERAQGCKDC-----------VAVVPGKPQVQIGTHSFTFDHVYGSTG 59
++V +RP + E + C C + + + + ++G F+FD V+
Sbjct: 58 IRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 60 SPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGY--QTGIIPLVMN 117
S S E ++PL+ GYN + AYGQ+GSGKTYTM DG G+IP ++
Sbjct: 116 SQSDIF--EMVSPLIQSALDGYNICIFAYGQSGSGKTYTM-----DGVPESVGVIPRTVD 168
Query: 118 VLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPI 176
+LF I ++ E+++ +F+EI E + DLL + +
Sbjct: 169 LLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------------QKDM 209
Query: 177 QIRETSNGV--ITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234
+IR N I ++ TE +V + + ++RAT ST N +SSRSHA+ +
Sbjct: 210 EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLE 269
Query: 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRG 294
L +G + + ++ ++LVDLAGSE K + R E +INR
Sbjct: 270 L----------IGRHAEKQEIS----VGSINLVDLAGSESPKTST----RMTETKNINRS 311
Query: 295 LLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEET 354
L L NVI AL + H+PYR+SKLT LL SLGGNS+T+M +SP +E+
Sbjct: 312 LSELTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQES 366
Query: 355 LNTLKYA 361
+ +L++A
Sbjct: 367 VKSLRFA 373
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/367 (30%), Positives = 174/367 (47%), Gaps = 67/367 (18%)
Query: 11 VKVAVHVRPLIGDERAQGCKDC-----------VAVVPGKPQVQIGTHSFTFDHVYGSTG 59
++V +RP + E + C C + + + + ++G F+FD V+
Sbjct: 58 IRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 60 SPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGY--QTGIIPLVMN 117
S S E ++PL+ GYN + AYGQTGSGKTYTM DG G+IP ++
Sbjct: 116 SQSDIF--EMVSPLIQSALDGYNICIFAYGQTGSGKTYTM-----DGVPESVGVIPRTVD 168
Query: 118 VLFSKIETLKDQT-EFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPI 176
+LF I ++ E+++ +F+EI E + DLL + +
Sbjct: 169 LLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------------QKDM 209
Query: 177 QIRETSNGV--ITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234
+IR N I ++ TE +V + + ++RAT ST N +SSRSHA+ +
Sbjct: 210 EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLE 269
Query: 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRG 294
L +G + + E ++LVDLAGSE K + R E +I R
Sbjct: 270 L----------IGRHAEKQ----EISVGSINLVDLAGSESPKTST----RMTETKNIKRS 311
Query: 295 LLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEET 354
L L NVI AL + H+PYR+SKLT LL SLGGNS+T+M +SP +E+
Sbjct: 312 LSELTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQES 366
Query: 355 LNTLKYA 361
+ +L++A
Sbjct: 367 VKSLRFA 373
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 184/386 (47%), Gaps = 66/386 (17%)
Query: 11 VKVAVHVRPLIGDERAQGCKDCVAV------VPGKPQVQIGT------HSFTFDHVYGST 58
+KV V RPL E+ + D + V +P+ ++ H F D V+ T
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 59 GSPSSAMFDECIAPLVDGLFQ-GYNATVLAYGQTGSGKTYTM--GTGFKDGYQTGIIPLV 115
+ +++ I PL+ L++ G + AYGQTGSGKTYTM + GI
Sbjct: 62 -VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 116 MNVLFSKIETL-KDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKP 174
+F+ + KD T+ + +SF EI ++ DLL + A GK V K
Sbjct: 121 AGDIFTFLNIYDKDNTK-GIFISFYEIYCGKLYDLLQ----KRKMVAALENGKKEVVVKD 175
Query: 175 PIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234
+R V + +E+ + G L R G + N++SSRSHAI I
Sbjct: 176 LKILR----------------VLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNID 219
Query: 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFK-EGVHINR 293
L+ + K SLG K+ +DLAGSER T S + + +G +INR
Sbjct: 220 LKDINK--NTSLG---------------KIAFIDLAGSERGADTVSQNKQTQTDGANINR 262
Query: 294 GLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEE 353
LLAL I A+ DK H+P+RDS+LT++L+D G S+++MIA ISP E+
Sbjct: 263 SLLALKECIRAMDSDKN-----HIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQ 317
Query: 354 TLNTLKYANRARN-----IQNKPIVN 374
TLNTL+Y++R +N ++ KPI N
Sbjct: 318 TLNTLRYSSRVKNKGNSKLEGKPIPN 343
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 130/269 (48%), Gaps = 36/269 (13%)
Query: 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT-HSFTFDHVYGSTGSPSSAMF 66
+C +KV RPL E +G K + G+ V IG + FD V + ++
Sbjct: 5 ECSIKVMCRFRPLNEAEILRGDK-FIPKFKGEETVVIGQGKPYVFDRVL-PPNTTQEQVY 62
Query: 67 DECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETL 126
+ C +V + +GYN T+ AYGQT SGKT+TM D GIIP + + +F I ++
Sbjct: 63 NACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSM 122
Query: 127 KDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVI 186
+ EF + VS+ EI +++RDLLD K + + E N V
Sbjct: 123 DENLEFHIKVSYFEIYLDKIRDLLD-------------------VSKTNLAVHEDKNRVP 163
Query: 187 TLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSL 246
+ G TE VSS +E+ +++G +R TNMN SSRSH+IF I ++Q
Sbjct: 164 YVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQ--------- 214
Query: 247 GDSSPNESMNEEYLCAKLHLVDLAGSERA 275
E+ L KL+LVDLAGSE+
Sbjct: 215 -----ENVETEKKLSGKLYLVDLAGSEKV 238
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 292 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 351
N+ L ALGNVISAL + K HVPYRDSK+TR+LQDSLGGN RT ++ C SP+ N
Sbjct: 1 NKSLSALGNVISALAEGTK----THVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNE 56
Query: 352 EETLNTLKYANRARNIQNKPIVN 374
ET +TL + RA+ I+N VN
Sbjct: 57 AETKSTLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 88.6 bits (218), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 290 HINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADI 349
+IN+ L ALGNVISAL + K HVPYRDSK+TR+LQDSL GN RT ++ C SP+
Sbjct: 3 NINKSLSALGNVISALAEGTK----THVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVF 58
Query: 350 NAEETLNTLKYANRARNIQNKPIVN 374
N ET +TL + RA+ I+N VN
Sbjct: 59 NEAETKSTLMFGQRAKTIKNTVSVN 83
>pdb|3LMM|A Chain A, Crystal Structure Of The Dip2311 Protein From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr35
pdb|3LMM|B Chain B, Crystal Structure Of The Dip2311 Protein From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr35
pdb|3LMM|C Chain C, Crystal Structure Of The Dip2311 Protein From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr35
pdb|3LMM|D Chain D, Crystal Structure Of The Dip2311 Protein From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr35
Length = 583
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 551 RDHLLTEIEN-LASNSDGQTQKLQDVHAHKLKSLEAQILDLKKK--QENQVQLLKQKQKS 607
R+ L+ ++E+ LAS +DG+ QK + E Q +D K++ + N Q+ K ++
Sbjct: 12 REQLIAQVESILASAADGRVQKTK----------ETQSVDFKEEAGRRNGPQIEPGKPEN 61
Query: 608 DEAAKRLQDEI 618
EAA +L DE+
Sbjct: 62 PEAADKLADEV 72
>pdb|2ZUS|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUT|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUU|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUV|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUV|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUW|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
Length = 759
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 273 ERAKRTGSDGLRFKEGVHINRGLLALG-NVISALGDDKKRKEGVHVPYRDSKLTRLLQDS 331
E A+ G+D +R +G H++ +LALG + +A + E + + ++ LL D
Sbjct: 21 ELAELWGADAIRNSDGTHLDEAVLALGKKIYNAYFPTRAHNEWITLHMDETPQVYLLTDR 80
Query: 332 LGGNSRTVMIACI 344
+ S TV I +
Sbjct: 81 ILAESDTVDIPLM 93
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99
+ IA LVDGL +G L G TG+GKT+T+
Sbjct: 19 QAIAKLVDGLRRGVKHQTLL-GATGTGKTFTI 49
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And
Processing By Uvrb: Crystal Structure Of A UvrbDNA
COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And
Processing By Uvrb: Crystal Structure Of A UvrbDNA
COMPLEX
Length = 658
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99
+ IA LVDGL +G L G TG+GKT+T+
Sbjct: 19 QAIAKLVDGLRRGVKHQTLL-GATGTGKTFTI 49
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99
+ IA LVDGL +G L G TG+GKT+T+
Sbjct: 19 QAIAKLVDGLRRGVKHQTLL-GATGTGKTFTI 49
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99
+ IA LVDGL +G L G TG+GKT+T+
Sbjct: 19 QAIAKLVDGLRRGVKHQTLL-GATGTGKTFTI 49
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 123 IETLKDQTEFQLHVSFIEILKEEVR-DLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRET 181
I KD+ F + + E+++ DLL PC + NG + + PG+ +ET
Sbjct: 247 IRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPS---SSPGQERELFQET 303
Query: 182 SNGVITLAGSTEVSVSSLKEMAACLEQGSLS 212
+ L S E +S L+ ++A L+ G+++
Sbjct: 304 LESLRVLGFSHEEIISMLRMVSAVLQFGNIA 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,498,172
Number of Sequences: 62578
Number of extensions: 1122777
Number of successful extensions: 2920
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2601
Number of HSP's gapped (non-prelim): 130
length of query: 1034
length of database: 14,973,337
effective HSP length: 109
effective length of query: 925
effective length of database: 8,152,335
effective search space: 7540909875
effective search space used: 7540909875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)